Query 011935
Match_columns 474
No_of_seqs 445 out of 3062
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 5.8E-40 2E-44 335.5 21.1 214 205-424 141-363 (405)
2 4b4t_I 26S protease regulatory 100.0 1.1E-39 3.8E-44 334.4 21.4 214 205-424 175-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.1E-38 3.6E-43 330.9 22.6 214 205-424 174-396 (437)
4 4b4t_M 26S protease regulatory 100.0 5.3E-39 1.8E-43 332.9 19.0 215 204-424 173-396 (434)
5 4b4t_K 26S protease regulatory 100.0 1.8E-38 6.1E-43 328.7 20.8 214 205-424 165-388 (428)
6 4b4t_H 26S protease regulatory 100.0 2E-38 6.7E-43 328.1 20.2 212 206-423 203-423 (467)
7 3cf2_A TER ATPase, transitiona 100.0 1.1E-33 3.6E-38 312.3 9.5 214 205-424 470-692 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.4E-32 8.1E-37 301.5 15.4 209 207-424 199-416 (806)
9 3cf0_A Transitional endoplasmi 100.0 8.8E-29 3E-33 246.3 20.3 213 205-423 8-229 (301)
10 2x8a_A Nuclear valosin-contain 100.0 3.4E-28 1.1E-32 239.1 19.6 211 207-424 5-227 (274)
11 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.5E-27 1.2E-31 228.4 20.8 212 208-423 2-222 (262)
12 3h4m_A Proteasome-activating n 100.0 3.2E-27 1.1E-31 232.1 19.9 213 205-423 10-231 (285)
13 2ce7_A Cell division protein F 99.9 3.4E-27 1.2E-31 247.9 20.4 210 207-423 11-229 (476)
14 1xwi_A SKD1 protein; VPS4B, AA 99.9 7.8E-27 2.7E-31 234.5 21.2 209 206-424 6-224 (322)
15 1lv7_A FTSH; alpha/beta domain 99.9 2.3E-26 7.9E-31 223.0 20.2 211 205-422 5-224 (257)
16 3eie_A Vacuolar protein sortin 99.9 1.2E-26 4.1E-31 233.0 17.1 212 203-424 9-229 (322)
17 2qp9_X Vacuolar protein sortin 99.9 5.1E-26 1.7E-30 231.6 16.1 209 206-424 45-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 1.1E-25 3.7E-30 237.9 18.3 208 207-423 199-415 (489)
19 2r62_A Cell division protease 99.9 2.4E-26 8.2E-31 224.0 12.1 212 206-422 5-225 (268)
20 2zan_A Vacuolar protein sortin 99.9 3E-25 1E-29 232.4 17.4 210 205-424 127-346 (444)
21 2dhr_A FTSH; AAA+ protein, hex 99.9 6.1E-25 2.1E-29 232.0 19.4 209 207-423 26-244 (499)
22 1ixz_A ATP-dependent metallopr 99.9 3.8E-24 1.3E-28 207.0 19.5 185 205-394 9-201 (254)
23 3vfd_A Spastin; ATPase, microt 99.9 1.8E-24 6E-29 222.7 18.2 212 203-423 106-326 (389)
24 3d8b_A Fidgetin-like protein 1 99.9 2.5E-24 8.6E-29 219.2 16.9 209 206-423 78-295 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 8.4E-24 2.9E-28 209.0 17.2 209 206-423 15-233 (297)
26 1ypw_A Transitional endoplasmi 99.9 2.9E-26 9.8E-31 256.1 -3.2 213 206-424 471-692 (806)
27 1iy2_A ATP-dependent metallopr 99.9 4.5E-23 1.5E-27 202.4 19.6 185 205-394 33-225 (278)
28 3t15_A Ribulose bisphosphate c 99.9 1.2E-23 3.9E-28 208.6 12.9 163 240-410 30-213 (293)
29 1ypw_A Transitional endoplasmi 99.9 8.1E-22 2.8E-26 220.2 16.5 208 206-422 198-414 (806)
30 2c9o_A RUVB-like 1; hexameric 99.8 1.5E-20 5.3E-25 197.3 7.7 167 206-381 31-226 (456)
31 3pfi_A Holliday junction ATP-d 99.8 9.4E-19 3.2E-23 175.9 20.0 169 199-395 18-200 (338)
32 3syl_A Protein CBBX; photosynt 99.8 1.3E-18 4.5E-23 172.4 18.0 170 211-395 29-220 (309)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 8E-18 2.7E-22 167.7 19.2 191 206-423 6-211 (324)
34 1g41_A Heat shock protein HSLU 99.8 1.8E-19 6.3E-24 186.9 5.1 162 213-388 16-188 (444)
35 1ofh_A ATP-dependent HSL prote 99.7 1.2E-17 4.2E-22 164.9 14.1 173 213-391 16-214 (310)
36 3hws_A ATP-dependent CLP prote 99.7 4.2E-18 1.4E-22 173.3 6.1 174 214-391 17-268 (363)
37 3uk6_A RUVB-like 2; hexameric 99.7 3.4E-16 1.2E-20 158.8 19.8 158 207-395 38-275 (368)
38 2chg_A Replication factor C sm 99.7 3.1E-16 1.1E-20 145.9 17.9 154 205-394 10-176 (226)
39 3u61_B DNA polymerase accessor 99.7 8.4E-17 2.9E-21 160.7 13.9 157 199-392 15-178 (324)
40 1d2n_A N-ethylmaleimide-sensit 99.7 3.5E-16 1.2E-20 152.5 17.5 167 212-390 33-210 (272)
41 1jbk_A CLPB protein; beta barr 99.7 6.6E-17 2.2E-21 147.0 8.2 152 207-388 17-194 (195)
42 1njg_A DNA polymerase III subu 99.7 2E-15 6.9E-20 142.0 17.7 155 205-394 16-200 (250)
43 1sxj_A Activator 1 95 kDa subu 99.7 9.9E-16 3.4E-20 163.1 16.9 174 198-394 27-224 (516)
44 3pvs_A Replication-associated 99.7 1.5E-15 5.3E-20 158.6 17.0 151 205-394 19-180 (447)
45 1um8_A ATP-dependent CLP prote 99.6 2.3E-15 8E-20 153.7 17.0 174 213-390 22-284 (376)
46 4fcw_A Chaperone protein CLPB; 99.6 8.2E-16 2.8E-20 152.2 12.9 161 212-394 17-231 (311)
47 2chq_A Replication factor C sm 99.6 1.9E-15 6.4E-20 149.6 14.7 155 205-395 10-177 (319)
48 3m6a_A ATP-dependent protease 99.6 6.2E-16 2.1E-20 165.6 11.7 160 211-392 80-266 (543)
49 3te6_A Regulatory protein SIR3 99.6 4.5E-15 1.5E-19 148.0 16.1 205 214-448 22-291 (318)
50 2v1u_A Cell division control p 99.6 2.2E-15 7.7E-20 152.8 13.7 163 207-393 14-215 (387)
51 2r44_A Uncharacterized protein 99.6 2.8E-15 9.7E-20 150.1 12.1 152 210-394 25-200 (331)
52 1jr3_A DNA polymerase III subu 99.6 2.4E-14 8.2E-19 145.0 18.5 156 205-395 9-194 (373)
53 1sxj_B Activator 1 37 kDa subu 99.6 1.1E-14 3.9E-19 144.2 15.5 158 199-394 10-181 (323)
54 1iqp_A RFCS; clamp loader, ext 99.6 9.2E-15 3.1E-19 145.1 14.8 158 199-394 14-184 (327)
55 1sxj_D Activator 1 41 kDa subu 99.6 7.5E-15 2.6E-19 147.6 14.1 158 199-394 26-207 (353)
56 2p65_A Hypothetical protein PF 99.6 1.3E-15 4.4E-20 138.2 7.2 146 206-380 16-187 (187)
57 1l8q_A Chromosomal replication 99.6 1.1E-14 3.9E-19 145.4 14.7 163 205-395 4-182 (324)
58 3pxg_A Negative regulator of g 99.6 2.7E-14 9.1E-19 150.3 18.1 147 206-394 174-340 (468)
59 2qby_B CDC6 homolog 3, cell di 99.6 1.8E-14 6.2E-19 146.5 16.3 151 212-393 20-211 (384)
60 1in4_A RUVB, holliday junction 99.6 7.8E-14 2.7E-18 140.3 20.6 188 205-419 18-219 (334)
61 3bos_A Putative DNA replicatio 99.6 4.1E-15 1.4E-19 140.7 10.5 160 205-394 21-189 (242)
62 3pxi_A Negative regulator of g 99.6 2.2E-14 7.4E-19 159.6 15.7 156 212-394 491-677 (758)
63 1qvr_A CLPB protein; coiled co 99.6 2E-14 6.7E-19 161.9 15.0 157 207-393 165-346 (854)
64 1g8p_A Magnesium-chelatase 38 99.6 2.4E-14 8.1E-19 143.9 13.5 156 205-393 17-233 (350)
65 1r6b_X CLPA protein; AAA+, N-t 99.6 2.6E-14 9E-19 158.9 15.1 155 212-393 458-667 (758)
66 2qby_A CDC6 homolog 1, cell di 99.5 4E-14 1.4E-18 143.3 15.1 162 206-393 14-211 (386)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 1.3E-13 4.3E-18 153.4 19.1 159 206-393 180-363 (758)
68 2z4s_A Chromosomal replication 99.5 3.3E-14 1.1E-18 148.4 12.8 160 205-394 98-278 (440)
69 1fnn_A CDC6P, cell division co 99.5 2E-13 6.9E-18 138.7 18.3 160 210-394 15-208 (389)
70 3pxi_A Negative regulator of g 99.5 1.5E-13 5.3E-18 152.7 18.7 147 206-394 174-340 (758)
71 2bjv_A PSP operon transcriptio 99.5 6.2E-14 2.1E-18 135.9 11.7 155 209-393 3-195 (265)
72 1sxj_E Activator 1 40 kDa subu 99.5 1.5E-13 5.1E-18 138.5 14.8 156 205-395 7-209 (354)
73 1sxj_C Activator 1 40 kDa subu 99.5 6.4E-13 2.2E-17 133.7 16.6 157 199-393 14-183 (340)
74 3n70_A Transport activator; si 99.5 6.1E-14 2.1E-18 123.9 7.4 131 213-378 2-143 (145)
75 1a5t_A Delta prime, HOLB; zinc 99.4 3.9E-12 1.3E-16 127.9 17.9 125 245-392 23-180 (334)
76 1qvr_A CLPB protein; coiled co 99.4 7.1E-13 2.4E-17 149.2 11.7 157 211-394 557-772 (854)
77 3co5_A Putative two-component 99.4 1.2E-13 4.1E-18 121.8 3.8 131 213-378 5-141 (143)
78 1ojl_A Transcriptional regulat 99.4 1.7E-12 5.8E-17 128.9 11.3 152 212-393 2-191 (304)
79 2gno_A DNA polymerase III, gam 99.3 4.5E-12 1.5E-16 125.9 12.8 122 246-392 18-152 (305)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 4.4E-12 1.5E-16 134.0 10.5 146 213-393 23-197 (500)
81 3ec2_A DNA replication protein 99.3 3.8E-12 1.3E-16 116.0 8.1 128 207-357 5-143 (180)
82 3f9v_A Minichromosome maintena 99.3 3.9E-13 1.3E-17 145.3 1.4 128 248-395 329-493 (595)
83 4akg_A Glutathione S-transfera 99.2 5.1E-11 1.7E-15 145.6 15.6 138 246-394 1267-1433(2695)
84 1w5s_A Origin recognition comp 99.2 9.2E-11 3.2E-15 120.0 13.2 164 210-393 20-229 (412)
85 2w58_A DNAI, primosome compone 99.2 5.8E-11 2E-15 109.9 8.7 97 207-309 20-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.1 2.6E-10 8.8E-15 116.3 8.7 121 241-378 164-284 (377)
87 2qgz_A Helicase loader, putati 99.0 2.8E-10 9.7E-15 113.1 6.4 96 208-309 120-226 (308)
88 3cmw_A Protein RECA, recombina 99.0 6.9E-10 2.4E-14 130.6 8.7 146 209-357 1017-1218(1706)
89 1tue_A Replication protein E1; 98.9 1.5E-09 5.1E-14 100.8 7.6 114 242-379 54-179 (212)
90 3k1j_A LON protease, ATP-depen 98.9 1.6E-09 5.5E-14 117.3 7.9 53 205-272 34-86 (604)
91 2kjq_A DNAA-related protein; s 98.9 1.5E-09 5.3E-14 96.1 6.2 101 245-372 35-141 (149)
92 2fna_A Conserved hypothetical 98.9 5.2E-08 1.8E-12 97.0 17.9 149 209-393 10-223 (357)
93 2qen_A Walker-type ATPase; unk 98.8 6.6E-07 2.3E-11 88.8 22.2 178 208-419 8-242 (350)
94 2r2a_A Uncharacterized protein 98.8 6.3E-09 2.1E-13 96.8 6.8 121 247-383 6-157 (199)
95 4akg_A Glutathione S-transfera 98.8 1.3E-08 4.4E-13 124.8 11.4 130 246-391 645-792 (2695)
96 2vhj_A Ntpase P4, P4; non- hyd 98.7 5.1E-09 1.8E-13 103.8 5.0 116 242-364 119-242 (331)
97 3dzd_A Transcriptional regulat 98.6 6.9E-07 2.4E-11 90.8 17.3 193 213-445 130-359 (368)
98 3vkg_A Dynein heavy chain, cyt 98.6 1.6E-07 5.3E-12 116.1 14.3 135 246-393 1304-1470(3245)
99 1u0j_A DNA replication protein 98.6 8.2E-08 2.8E-12 92.8 8.9 122 244-389 102-248 (267)
100 1ny5_A Transcriptional regulat 98.5 5.8E-07 2E-11 91.9 12.1 194 212-445 137-368 (387)
101 3f8t_A Predicted ATPase involv 98.4 2.7E-07 9.1E-12 95.6 7.5 141 214-383 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 1.3E-06 4.5E-11 108.0 12.7 128 247-393 605-754 (3245)
103 3cmu_A Protein RECA, recombina 98.3 9.2E-07 3.1E-11 105.6 8.1 112 243-357 1424-1563(2050)
104 1ye8_A Protein THEP1, hypothet 98.1 7.2E-06 2.5E-10 74.5 9.3 28 248-275 2-29 (178)
105 1jr3_D DNA polymerase III, del 98.0 4.6E-05 1.6E-09 76.0 12.1 124 245-394 17-157 (343)
106 1z6t_A APAF-1, apoptotic prote 97.7 0.00038 1.3E-08 74.5 14.9 50 208-268 120-169 (591)
107 2cvh_A DNA repair and recombin 97.7 0.00014 4.9E-09 67.0 9.5 40 242-281 16-55 (220)
108 3trf_A Shikimate kinase, SK; a 97.6 2.5E-05 8.6E-10 70.4 3.3 33 246-278 5-37 (185)
109 3hr8_A Protein RECA; alpha and 97.6 0.00016 5.6E-09 72.7 9.4 70 242-311 57-153 (356)
110 1qhx_A CPT, protein (chloramph 97.6 3.2E-05 1.1E-09 69.2 3.6 34 247-280 4-37 (178)
111 3kb2_A SPBC2 prophage-derived 97.6 7.4E-05 2.5E-09 66.1 5.5 31 248-278 3-33 (173)
112 3vaa_A Shikimate kinase, SK; s 97.6 3.6E-05 1.2E-09 70.7 3.5 34 245-278 24-57 (199)
113 1n0w_A DNA repair protein RAD5 97.5 0.00018 6.1E-09 67.4 8.4 40 242-281 20-68 (243)
114 2rhm_A Putative kinase; P-loop 97.5 3.6E-05 1.2E-09 69.7 3.1 35 243-277 2-36 (193)
115 3sfz_A APAF-1, apoptotic pepti 97.5 0.00079 2.7E-08 77.7 14.7 145 206-394 118-301 (1249)
116 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00032 1.1E-08 64.9 9.1 29 242-270 19-47 (235)
117 1xp8_A RECA protein, recombina 97.5 0.00039 1.3E-08 70.3 9.9 70 242-311 70-166 (366)
118 2ehv_A Hypothetical protein PH 97.4 0.00031 1E-08 66.1 8.3 26 242-267 26-51 (251)
119 3upu_A ATP-dependent DNA helic 97.4 0.00043 1.5E-08 72.0 10.2 63 205-280 17-83 (459)
120 2iyv_A Shikimate kinase, SK; t 97.4 6.7E-05 2.3E-09 67.6 3.5 32 247-278 3-34 (184)
121 1u94_A RECA protein, recombina 97.4 0.00027 9.2E-09 71.2 8.2 70 242-311 59-155 (356)
122 3iij_A Coilin-interacting nucl 97.4 6.6E-05 2.2E-09 67.5 3.3 32 246-277 11-42 (180)
123 1via_A Shikimate kinase; struc 97.4 6.4E-05 2.2E-09 67.3 3.0 30 248-277 6-35 (175)
124 1zuh_A Shikimate kinase; alpha 97.4 7E-05 2.4E-09 66.5 3.2 32 247-278 8-39 (168)
125 2zr9_A Protein RECA, recombina 97.4 0.00025 8.5E-09 71.3 7.6 70 242-311 57-153 (349)
126 2orw_A Thymidine kinase; TMTK, 97.4 9.4E-05 3.2E-09 67.4 3.9 29 248-276 5-36 (184)
127 1kag_A SKI, shikimate kinase I 97.4 8.7E-05 3E-09 66.0 3.4 30 247-276 5-34 (173)
128 1y63_A LMAJ004144AAA protein; 97.4 8E-05 2.7E-09 67.5 3.1 33 246-278 10-43 (184)
129 3cmu_A Protein RECA, recombina 97.3 0.00037 1.3E-08 83.6 9.1 70 242-311 1077-1173(2050)
130 1e6c_A Shikimate kinase; phosp 97.3 0.00011 3.7E-09 65.3 3.0 32 247-278 3-34 (173)
131 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.6E-09 66.7 3.6 31 247-277 21-51 (201)
132 1v5w_A DMC1, meiotic recombina 97.3 0.00037 1.3E-08 69.8 7.2 40 242-281 118-166 (343)
133 2ze6_A Isopentenyl transferase 97.3 0.00014 4.9E-09 69.6 3.8 33 248-280 3-35 (253)
134 3e1s_A Exodeoxyribonuclease V, 97.3 0.0007 2.4E-08 72.5 9.5 63 247-309 205-291 (574)
135 1pzn_A RAD51, DNA repair and r 97.2 0.0003 1E-08 70.7 6.0 29 242-270 127-155 (349)
136 3lw7_A Adenylate kinase relate 97.2 0.00013 4.4E-09 64.4 2.9 29 248-277 3-31 (179)
137 1tev_A UMP-CMP kinase; ploop, 97.2 0.00013 4.5E-09 65.8 3.0 32 246-277 3-34 (196)
138 1gvn_B Zeta; postsegregational 97.2 0.00034 1.2E-08 68.3 6.0 35 245-279 32-66 (287)
139 3t61_A Gluconokinase; PSI-biol 97.2 0.00018 6.3E-09 65.8 3.8 32 246-277 18-49 (202)
140 3io5_A Recombination and repai 97.2 0.00083 2.8E-08 66.3 8.6 68 243-311 26-125 (333)
141 2c95_A Adenylate kinase 1; tra 97.2 0.00014 4.9E-09 65.8 2.9 33 246-278 9-41 (196)
142 2pt5_A Shikimate kinase, SK; a 97.2 0.00016 5.6E-09 63.8 3.2 31 248-278 2-32 (168)
143 1qf9_A UMP/CMP kinase, protein 97.2 0.00015 5.1E-09 65.3 2.9 33 245-277 5-37 (194)
144 3be4_A Adenylate kinase; malar 97.2 0.00014 4.6E-09 67.8 2.5 31 247-277 6-36 (217)
145 3cm0_A Adenylate kinase; ATP-b 97.2 0.00014 4.7E-09 65.5 2.5 31 247-277 5-35 (186)
146 2z43_A DNA repair and recombin 97.1 0.00044 1.5E-08 68.6 6.0 40 242-281 103-151 (324)
147 3dl0_A Adenylate kinase; phosp 97.1 0.00019 6.4E-09 66.5 3.1 29 249-277 3-31 (216)
148 1kht_A Adenylate kinase; phosp 97.1 0.00016 5.5E-09 65.1 2.6 25 247-271 4-28 (192)
149 2bwj_A Adenylate kinase 5; pho 97.1 0.00017 5.7E-09 65.5 2.7 32 246-277 12-43 (199)
150 1ly1_A Polynucleotide kinase; 97.1 0.00011 3.9E-09 65.4 1.4 29 247-275 3-32 (181)
151 1aky_A Adenylate kinase; ATP:A 97.1 0.00021 7.3E-09 66.4 3.3 31 247-277 5-35 (220)
152 3fb4_A Adenylate kinase; psych 97.1 0.00021 7E-09 66.1 3.2 29 249-277 3-31 (216)
153 1zd8_A GTP:AMP phosphotransfer 97.1 0.00017 5.9E-09 67.4 2.6 32 246-277 7-38 (227)
154 1zp6_A Hypothetical protein AT 97.1 0.00018 6.1E-09 65.0 2.6 37 243-279 6-42 (191)
155 2a5y_B CED-4; apoptosis; HET: 97.1 0.0085 2.9E-07 63.6 16.0 136 215-392 131-306 (549)
156 3lda_A DNA repair protein RAD5 97.1 0.00075 2.6E-08 69.0 7.3 28 242-269 174-201 (400)
157 1knq_A Gluconate kinase; ALFA/ 97.1 0.00028 9.7E-09 62.9 3.5 30 247-276 9-38 (175)
158 2pez_A Bifunctional 3'-phospho 97.0 0.00041 1.4E-08 62.1 4.4 34 246-279 5-41 (179)
159 1ukz_A Uridylate kinase; trans 97.0 0.00026 9.1E-09 64.7 3.1 32 247-278 16-47 (203)
160 1ak2_A Adenylate kinase isoenz 97.0 0.00029 9.9E-09 66.3 3.4 31 247-277 17-47 (233)
161 2p5t_B PEZT; postsegregational 97.0 0.00043 1.5E-08 66.1 4.6 38 245-282 31-68 (253)
162 1zak_A Adenylate kinase; ATP:A 97.0 0.00019 6.4E-09 66.9 1.9 31 246-276 5-35 (222)
163 2vli_A Antibiotic resistance p 97.0 0.00025 8.5E-09 63.5 2.6 29 247-275 6-34 (183)
164 4eun_A Thermoresistant glucoki 97.0 0.00044 1.5E-08 63.3 4.1 31 246-276 29-59 (200)
165 2pbr_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 62.0 4.3 31 249-279 3-36 (195)
166 2r8r_A Sensor protein; KDPD, P 97.0 0.0017 5.8E-08 61.0 7.8 33 247-279 7-42 (228)
167 3tlx_A Adenylate kinase 2; str 97.0 0.00035 1.2E-08 66.3 3.2 33 245-277 28-60 (243)
168 1e4v_A Adenylate kinase; trans 96.9 0.00033 1.1E-08 64.8 2.7 29 249-277 3-31 (214)
169 3crm_A TRNA delta(2)-isopenten 96.9 0.00045 1.5E-08 68.5 3.6 34 246-279 5-38 (323)
170 3umf_A Adenylate kinase; rossm 96.9 0.00054 1.9E-08 64.1 3.9 31 245-275 28-58 (217)
171 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00028 9.7E-09 70.7 1.7 51 217-276 4-54 (359)
172 2bbw_A Adenylate kinase 4, AK4 96.8 0.00064 2.2E-08 64.3 3.9 31 246-276 27-57 (246)
173 3sr0_A Adenylate kinase; phosp 96.8 0.00064 2.2E-08 63.1 3.7 27 249-275 3-29 (206)
174 2xb4_A Adenylate kinase; ATP-b 96.8 0.00066 2.3E-08 63.4 3.8 29 249-277 3-31 (223)
175 1cke_A CK, MSSA, protein (cyti 96.8 0.0007 2.4E-08 62.8 3.8 30 247-276 6-35 (227)
176 2jaq_A Deoxyguanosine kinase; 96.8 0.00066 2.3E-08 61.6 3.5 28 249-276 3-30 (205)
177 2z0h_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 60.7 4.2 31 249-279 3-36 (197)
178 2plr_A DTMP kinase, probable t 96.8 0.0014 4.7E-08 59.9 5.6 27 247-273 5-31 (213)
179 2if2_A Dephospho-COA kinase; a 96.8 0.00046 1.6E-08 63.1 2.4 30 248-278 3-32 (204)
180 2v54_A DTMP kinase, thymidylat 96.8 0.00071 2.4E-08 61.6 3.6 33 247-279 5-38 (204)
181 2c9o_A RUVB-like 1; hexameric 96.8 0.0049 1.7E-07 64.0 10.3 73 298-394 296-381 (456)
182 3nwj_A ATSK2; P loop, shikimat 96.8 0.00063 2.2E-08 65.1 3.3 33 246-278 48-80 (250)
183 1nks_A Adenylate kinase; therm 96.8 0.00047 1.6E-08 62.0 2.2 24 248-271 3-26 (194)
184 3ake_A Cytidylate kinase; CMP 96.7 0.00068 2.3E-08 61.9 3.2 31 248-278 4-34 (208)
185 3uie_A Adenylyl-sulfate kinase 96.7 0.0011 3.7E-08 60.6 4.5 34 245-278 24-60 (200)
186 2grj_A Dephospho-COA kinase; T 96.7 0.00069 2.3E-08 62.1 3.0 31 248-278 14-44 (192)
187 1jjv_A Dephospho-COA kinase; P 96.7 0.00058 2E-08 62.6 2.5 30 248-278 4-33 (206)
188 2b8t_A Thymidine kinase; deoxy 96.7 0.0068 2.3E-07 56.8 9.8 62 248-309 14-101 (223)
189 3r20_A Cytidylate kinase; stru 96.7 0.00097 3.3E-08 63.1 3.9 32 246-277 9-40 (233)
190 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.00087 3E-08 64.2 3.6 33 247-279 5-40 (260)
191 1g41_A Heat shock protein HSLU 96.6 0.0021 7.2E-08 66.4 5.7 94 290-389 243-346 (444)
192 2wwf_A Thymidilate kinase, put 96.5 0.00057 2E-08 62.6 1.3 28 246-273 10-37 (212)
193 4a74_A DNA repair and recombin 96.5 0.0024 8.1E-08 59.1 5.4 29 242-270 21-49 (231)
194 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.5E-08 60.3 3.5 29 243-271 9-37 (204)
195 1uf9_A TT1252 protein; P-loop, 96.5 0.00098 3.3E-08 60.5 2.5 31 247-278 9-39 (203)
196 2h92_A Cytidylate kinase; ross 96.5 0.0013 4.5E-08 60.7 3.3 32 247-278 4-35 (219)
197 3cmw_A Protein RECA, recombina 96.5 0.0035 1.2E-07 74.3 7.7 70 242-311 30-126 (1706)
198 4e22_A Cytidylate kinase; P-lo 96.4 0.002 6.7E-08 61.4 4.2 30 247-276 28-57 (252)
199 2iut_A DNA translocase FTSK; n 96.4 0.014 4.8E-07 62.0 11.0 74 299-389 345-420 (574)
200 1vht_A Dephospho-COA kinase; s 96.4 0.0014 4.8E-08 60.6 2.9 31 247-278 5-35 (218)
201 1nn5_A Similar to deoxythymidy 96.4 0.0008 2.7E-08 61.7 1.1 27 246-272 9-35 (215)
202 1uj2_A Uridine-cytidine kinase 96.4 0.0023 7.9E-08 60.8 4.3 38 246-283 22-67 (252)
203 1q3t_A Cytidylate kinase; nucl 96.4 0.0017 5.9E-08 61.0 3.4 31 247-277 17-47 (236)
204 3kl4_A SRP54, signal recogniti 96.3 0.014 4.8E-07 60.1 10.3 34 246-279 97-133 (433)
205 1g5t_A COB(I)alamin adenosyltr 96.3 0.0092 3.2E-07 54.7 7.9 109 247-377 29-178 (196)
206 3zvl_A Bifunctional polynucleo 96.3 0.0033 1.1E-07 64.6 5.4 58 246-305 258-316 (416)
207 3foz_A TRNA delta(2)-isopenten 96.3 0.002 6.9E-08 63.4 3.6 36 246-281 10-45 (316)
208 2fz4_A DNA repair protein RAD2 96.3 0.0039 1.3E-07 58.8 5.5 31 248-278 110-140 (237)
209 1kgd_A CASK, peripheral plasma 96.3 0.002 6.9E-08 57.9 3.2 26 246-271 5-30 (180)
210 3a8t_A Adenylate isopentenyltr 96.3 0.0016 5.5E-08 64.8 2.7 37 247-283 41-77 (339)
211 2yvu_A Probable adenylyl-sulfa 96.3 0.0034 1.2E-07 56.4 4.7 26 246-271 13-38 (186)
212 1ltq_A Polynucleotide kinase; 96.3 0.0013 4.4E-08 64.0 1.9 31 247-277 3-34 (301)
213 2qt1_A Nicotinamide riboside k 96.2 0.0012 4.2E-08 60.4 1.6 31 247-277 22-53 (207)
214 2bdt_A BH3686; alpha-beta prot 96.2 0.0023 7.8E-08 57.7 3.4 25 248-272 4-28 (189)
215 3jvv_A Twitching mobility prot 96.2 0.0045 1.5E-07 62.3 5.6 61 247-307 124-206 (356)
216 1kao_A RAP2A; GTP-binding prot 96.2 0.014 4.8E-07 50.2 8.2 22 248-269 5-26 (167)
217 1vt4_I APAF-1 related killer D 96.2 0.017 5.8E-07 65.5 10.6 55 215-281 131-191 (1221)
218 2j41_A Guanylate kinase; GMP, 96.2 0.002 6.9E-08 58.6 2.7 26 245-270 5-30 (207)
219 2qmh_A HPR kinase/phosphorylas 96.2 0.0016 5.3E-08 60.1 1.8 32 246-278 34-65 (205)
220 3dm5_A SRP54, signal recogniti 96.1 0.014 4.9E-07 60.1 9.1 61 219-280 74-137 (443)
221 1qde_A EIF4A, translation init 96.1 0.025 8.7E-07 51.9 10.0 51 209-262 14-67 (224)
222 1m7g_A Adenylylsulfate kinase; 96.1 0.0033 1.1E-07 57.9 3.9 34 245-278 24-61 (211)
223 3tau_A Guanylate kinase, GMP k 96.1 0.0025 8.6E-08 58.7 3.0 27 246-272 8-34 (208)
224 3d3q_A TRNA delta(2)-isopenten 96.1 0.0025 8.5E-08 63.6 3.1 32 247-278 8-39 (340)
225 4b3f_X DNA-binding protein smu 96.1 0.0092 3.2E-07 64.7 7.8 53 215-282 189-244 (646)
226 2dr3_A UPF0273 protein PH0284; 96.1 0.0035 1.2E-07 58.5 3.8 37 242-278 19-58 (247)
227 1t6n_A Probable ATP-dependent 96.1 0.025 8.4E-07 51.9 9.6 58 207-267 12-72 (220)
228 1rz3_A Hypothetical protein rb 96.1 0.0086 2.9E-07 54.7 6.4 36 246-281 22-60 (201)
229 2f6r_A COA synthase, bifunctio 96.1 0.0022 7.6E-08 62.2 2.5 31 247-278 76-106 (281)
230 2ius_A DNA translocase FTSK; n 96.1 0.021 7.3E-07 60.0 10.1 75 299-390 299-375 (512)
231 2gxq_A Heat resistant RNA depe 96.0 0.021 7.3E-07 51.6 8.9 23 247-269 39-62 (207)
232 1ex7_A Guanylate kinase; subst 96.0 0.0037 1.2E-07 57.0 3.6 26 247-272 2-27 (186)
233 2i1q_A DNA repair and recombin 96.0 0.0048 1.6E-07 60.8 4.7 28 242-269 94-121 (322)
234 3b6e_A Interferon-induced heli 96.0 0.013 4.4E-07 53.3 7.2 23 247-269 49-71 (216)
235 3fdi_A Uncharacterized protein 96.0 0.003 1E-07 58.1 2.9 29 248-276 8-36 (201)
236 3exa_A TRNA delta(2)-isopenten 96.0 0.0033 1.1E-07 62.0 3.2 34 247-280 4-37 (322)
237 3tr0_A Guanylate kinase, GMP k 95.9 0.0037 1.3E-07 56.8 3.2 26 246-271 7-32 (205)
238 3c8u_A Fructokinase; YP_612366 95.9 0.0053 1.8E-07 56.4 4.1 26 246-271 22-47 (208)
239 2zts_A Putative uncharacterize 95.9 0.0054 1.8E-07 57.3 4.2 38 242-279 26-67 (251)
240 1lvg_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 57.0 3.1 26 246-271 4-29 (198)
241 3a00_A Guanylate kinase, GMP k 95.8 0.0041 1.4E-07 56.1 3.0 25 247-271 2-26 (186)
242 1z0j_A RAB-22, RAS-related pro 95.8 0.0095 3.3E-07 51.6 5.2 23 247-269 7-29 (170)
243 2ce2_X GTPase HRAS; signaling 95.8 0.019 6.3E-07 49.2 7.0 22 248-269 5-26 (166)
244 1nrj_B SR-beta, signal recogni 95.8 0.016 5.6E-07 52.9 6.9 25 246-270 12-36 (218)
245 3asz_A Uridine kinase; cytidin 95.7 0.0034 1.2E-07 57.5 2.1 25 247-271 7-31 (211)
246 2px0_A Flagellar biosynthesis 95.7 0.018 6.3E-07 56.2 7.5 59 246-304 105-189 (296)
247 1tf7_A KAIC; homohexamer, hexa 95.7 0.018 6.3E-07 60.7 7.9 29 242-270 277-305 (525)
248 2v9p_A Replication protein E1; 95.7 0.0061 2.1E-07 59.9 3.7 30 242-271 122-151 (305)
249 1ek0_A Protein (GTP-binding pr 95.6 0.011 3.8E-07 51.1 5.0 22 248-269 5-26 (170)
250 1u8z_A RAS-related protein RAL 95.6 0.027 9.1E-07 48.4 7.5 23 247-269 5-27 (168)
251 3eph_A TRNA isopentenyltransfe 95.6 0.005 1.7E-07 62.7 3.0 33 247-279 3-35 (409)
252 1nlf_A Regulatory protein REPA 95.6 0.004 1.4E-07 60.0 2.1 28 243-270 27-54 (279)
253 4dsu_A GTPase KRAS, isoform 2B 95.6 0.022 7.6E-07 50.2 6.9 23 247-269 5-27 (189)
254 1odf_A YGR205W, hypothetical 3 95.6 0.0084 2.9E-07 58.5 4.3 38 246-283 31-74 (290)
255 3gmt_A Adenylate kinase; ssgci 95.6 0.0072 2.5E-07 56.9 3.6 29 249-277 11-39 (230)
256 1vec_A ATP-dependent RNA helic 95.6 0.039 1.3E-06 49.8 8.6 18 247-264 41-58 (206)
257 1r8s_A ADP-ribosylation factor 95.6 0.065 2.2E-06 46.0 9.6 21 249-269 3-23 (164)
258 1c1y_A RAS-related protein RAP 95.6 0.025 8.4E-07 48.7 6.9 22 248-269 5-26 (167)
259 1z6g_A Guanylate kinase; struc 95.5 0.0064 2.2E-07 56.5 3.2 26 245-270 22-47 (218)
260 2a9k_A RAS-related protein RAL 95.5 0.034 1.2E-06 48.8 7.8 23 247-269 19-41 (187)
261 3thx_B DNA mismatch repair pro 95.5 0.014 5E-07 65.5 6.5 23 246-268 673-695 (918)
262 1x6v_B Bifunctional 3'-phospho 95.5 0.0085 2.9E-07 64.5 4.4 34 246-279 52-88 (630)
263 1htw_A HI0065; nucleotide-bind 95.5 0.0081 2.8E-07 53.1 3.6 27 244-270 31-57 (158)
264 3ney_A 55 kDa erythrocyte memb 95.5 0.0072 2.4E-07 55.6 3.2 26 246-271 19-44 (197)
265 1w4r_A Thymidine kinase; type 95.5 0.017 5.9E-07 52.8 5.7 62 248-309 22-103 (195)
266 4eaq_A DTMP kinase, thymidylat 95.5 0.0082 2.8E-07 56.3 3.6 30 247-276 27-58 (229)
267 3b9q_A Chloroplast SRP recepto 95.4 0.0077 2.6E-07 59.1 3.5 52 219-270 71-124 (302)
268 1r2q_A RAS-related protein RAB 95.4 0.015 5.1E-07 50.2 5.1 22 247-268 7-28 (170)
269 1znw_A Guanylate kinase, GMP k 95.4 0.0072 2.5E-07 55.4 3.1 26 246-271 20-45 (207)
270 3bor_A Human initiation factor 95.4 0.051 1.7E-06 50.7 9.1 54 207-263 28-84 (237)
271 2efe_B Small GTP-binding prote 95.4 0.02 6.7E-07 50.3 5.9 23 247-269 13-35 (181)
272 1cr0_A DNA primase/helicase; R 95.4 0.0062 2.1E-07 59.1 2.7 29 242-270 31-59 (296)
273 3tkl_A RAS-related protein RAB 95.4 0.018 6E-07 51.4 5.6 23 247-269 17-39 (196)
274 2oil_A CATX-8, RAS-related pro 95.4 0.017 5.8E-07 51.6 5.4 23 247-269 26-48 (193)
275 2bov_A RAla, RAS-related prote 95.4 0.041 1.4E-06 49.3 8.1 23 247-269 15-37 (206)
276 1s96_A Guanylate kinase, GMP k 95.4 0.0075 2.6E-07 56.3 3.1 29 243-271 13-41 (219)
277 1gtv_A TMK, thymidylate kinase 95.4 0.003 1E-07 57.8 0.3 24 249-272 3-26 (214)
278 3q72_A GTP-binding protein RAD 95.3 0.014 4.6E-07 50.5 4.4 21 248-268 4-24 (166)
279 2v3c_C SRP54, signal recogniti 95.3 0.019 6.4E-07 59.2 6.0 34 246-279 99-135 (432)
280 3t1o_A Gliding protein MGLA; G 95.3 0.038 1.3E-06 49.0 7.4 24 247-270 15-38 (198)
281 1wb9_A DNA mismatch repair pro 95.3 0.034 1.2E-06 61.7 8.4 24 246-269 607-630 (800)
282 3hdt_A Putative kinase; struct 95.3 0.0075 2.6E-07 56.5 2.7 30 247-276 15-44 (223)
283 3bc1_A RAS-related protein RAB 95.3 0.028 9.6E-07 49.7 6.4 23 247-269 12-34 (195)
284 1z0f_A RAB14, member RAS oncog 95.3 0.025 8.4E-07 49.4 5.9 23 247-269 16-38 (179)
285 1x3s_A RAS-related protein RAB 95.2 0.034 1.2E-06 49.4 6.9 23 247-269 16-38 (195)
286 2oxc_A Probable ATP-dependent 95.2 0.036 1.2E-06 51.4 7.2 55 206-263 21-78 (230)
287 3thx_A DNA mismatch repair pro 95.2 0.026 9E-07 63.5 7.1 23 246-268 662-684 (934)
288 2eyu_A Twitching motility prot 95.1 0.012 4E-07 56.5 3.7 26 245-270 24-49 (261)
289 1c9k_A COBU, adenosylcobinamid 95.1 0.016 5.5E-07 52.4 4.2 33 249-282 2-34 (180)
290 4gp7_A Metallophosphoesterase; 95.1 0.0086 2.9E-07 53.3 2.4 21 246-266 9-29 (171)
291 2erx_A GTP-binding protein DI- 95.1 0.022 7.4E-07 49.3 4.9 21 248-268 5-25 (172)
292 1a7j_A Phosphoribulokinase; tr 95.1 0.0073 2.5E-07 58.9 2.0 36 248-283 7-45 (290)
293 3con_A GTPase NRAS; structural 95.0 0.026 9E-07 50.1 5.6 22 248-269 23-44 (190)
294 3lxx_A GTPase IMAP family memb 95.0 0.043 1.5E-06 51.2 7.2 23 247-269 30-52 (239)
295 2axn_A 6-phosphofructo-2-kinas 95.0 0.012 4.2E-07 62.1 3.7 33 246-278 35-70 (520)
296 3pey_A ATP-dependent RNA helic 95.0 0.15 5.1E-06 50.4 11.6 56 209-264 5-62 (395)
297 1hv8_A Putative ATP-dependent 95.0 0.064 2.2E-06 52.6 8.7 57 209-268 6-66 (367)
298 2og2_A Putative signal recogni 95.0 0.01 3.6E-07 59.6 2.9 52 219-270 128-181 (359)
299 2atv_A RERG, RAS-like estrogen 95.0 0.051 1.7E-06 48.6 7.3 24 246-269 28-51 (196)
300 2jeo_A Uridine-cytidine kinase 95.0 0.012 4.1E-07 55.5 3.2 26 248-273 27-52 (245)
301 2yhs_A FTSY, cell division pro 94.9 0.011 3.8E-07 61.7 3.1 25 246-270 293-317 (503)
302 3kkq_A RAS-related protein M-R 94.9 0.033 1.1E-06 49.0 5.8 23 247-269 19-41 (183)
303 1p9r_A General secretion pathw 94.9 0.027 9.1E-07 57.8 5.9 24 248-271 169-192 (418)
304 2i3b_A HCR-ntpase, human cance 94.9 0.012 4.1E-07 53.6 2.9 23 248-270 3-25 (189)
305 3tqc_A Pantothenate kinase; bi 94.9 0.04 1.4E-06 54.5 6.8 35 248-282 94-133 (321)
306 2xau_A PRE-mRNA-splicing facto 94.9 0.041 1.4E-06 60.9 7.6 60 208-269 71-132 (773)
307 4f4c_A Multidrug resistance pr 94.9 0.062 2.1E-06 63.0 9.4 28 244-271 442-469 (1321)
308 3dz8_A RAS-related protein RAB 94.9 0.022 7.5E-07 50.9 4.5 23 248-270 25-47 (191)
309 3clv_A RAB5 protein, putative; 94.8 0.038 1.3E-06 49.1 6.0 23 247-269 8-30 (208)
310 1zd9_A ADP-ribosylation factor 94.8 0.042 1.4E-06 48.9 6.3 23 247-269 23-45 (188)
311 2ewv_A Twitching motility prot 94.8 0.016 5.5E-07 58.5 3.8 29 243-271 133-161 (372)
312 1vma_A Cell division protein F 94.8 0.012 3.9E-07 57.9 2.7 59 220-279 79-140 (306)
313 1np6_A Molybdopterin-guanine d 94.8 0.015 5.1E-07 52.2 3.2 25 246-270 6-30 (174)
314 2gk6_A Regulator of nonsense t 94.8 0.02 6.9E-07 61.8 4.7 24 247-270 196-219 (624)
315 3tqf_A HPR(Ser) kinase; transf 94.7 0.011 3.7E-07 53.2 2.0 29 246-275 16-44 (181)
316 3e70_C DPA, signal recognition 94.7 0.026 8.9E-07 56.0 5.0 26 245-270 128-153 (328)
317 3bh0_A DNAB-like replicative h 94.7 0.015 5.3E-07 57.1 3.3 37 242-278 64-103 (315)
318 3fe2_A Probable ATP-dependent 94.7 0.089 3E-06 49.1 8.4 17 247-263 67-83 (242)
319 3fmo_B ATP-dependent RNA helic 94.7 0.19 6.5E-06 48.8 11.0 54 207-263 90-148 (300)
320 3lnc_A Guanylate kinase, GMP k 94.6 0.0078 2.7E-07 56.1 0.9 26 246-271 27-53 (231)
321 2h57_A ADP-ribosylation factor 94.6 0.024 8.4E-07 50.4 4.1 24 247-270 22-45 (190)
322 1zbd_A Rabphilin-3A; G protein 94.5 0.035 1.2E-06 49.9 5.1 23 247-269 9-31 (203)
323 2hxs_A RAB-26, RAS-related pro 94.5 0.034 1.2E-06 48.5 4.8 22 247-268 7-28 (178)
324 2hup_A RAS-related protein RAB 94.5 0.044 1.5E-06 49.6 5.6 22 247-268 30-51 (201)
325 1m8p_A Sulfate adenylyltransfe 94.5 0.02 6.7E-07 61.2 3.7 34 247-280 397-434 (573)
326 1zu4_A FTSY; GTPase, signal re 94.5 0.025 8.5E-07 55.9 4.2 35 245-279 104-141 (320)
327 2ged_A SR-beta, signal recogni 94.5 0.03 1E-06 49.9 4.3 25 245-269 47-71 (193)
328 2p5s_A RAS and EF-hand domain 94.5 0.041 1.4E-06 49.5 5.3 24 246-269 28-51 (199)
329 1z06_A RAS-related protein RAB 94.4 0.054 1.9E-06 48.1 6.0 23 247-269 21-43 (189)
330 2r6a_A DNAB helicase, replicat 94.4 0.03 1E-06 58.0 4.8 38 242-279 199-240 (454)
331 3ber_A Probable ATP-dependent 94.4 0.14 4.7E-06 48.2 9.1 52 209-263 43-97 (249)
332 1rj9_A FTSY, signal recognitio 94.4 0.022 7.5E-07 55.9 3.6 26 246-271 102-127 (304)
333 4i1u_A Dephospho-COA kinase; s 94.4 0.018 6.3E-07 53.3 2.8 31 248-279 11-41 (210)
334 2fg5_A RAB-22B, RAS-related pr 94.4 0.028 9.6E-07 50.3 3.9 23 247-269 24-46 (192)
335 2f7s_A C25KG, RAS-related prot 94.3 0.065 2.2E-06 48.7 6.4 22 247-268 26-47 (217)
336 4edh_A DTMP kinase, thymidylat 94.3 0.022 7.5E-07 52.8 3.2 30 248-277 8-40 (213)
337 3ice_A Transcription terminati 94.3 0.047 1.6E-06 55.3 5.7 25 246-270 174-198 (422)
338 2q6t_A DNAB replication FORK h 94.3 0.031 1.1E-06 57.7 4.5 38 242-279 196-237 (444)
339 2fn4_A P23, RAS-related protei 94.3 0.027 9.3E-07 49.2 3.5 23 247-269 10-32 (181)
340 3aez_A Pantothenate kinase; tr 94.3 0.022 7.4E-07 56.1 3.2 25 247-271 91-115 (312)
341 2y8e_A RAB-protein 6, GH09086P 94.2 0.027 9.4E-07 49.1 3.5 23 247-269 15-37 (179)
342 2va8_A SSO2462, SKI2-type heli 94.2 0.2 6.9E-06 54.6 11.1 55 209-264 8-64 (715)
343 2gf0_A GTP-binding protein DI- 94.2 0.045 1.5E-06 48.8 4.9 22 247-268 9-30 (199)
344 3oes_A GTPase rhebl1; small GT 94.2 0.035 1.2E-06 50.0 4.2 23 247-269 25-47 (201)
345 1s2m_A Putative ATP-dependent 94.2 0.11 3.9E-06 51.7 8.4 56 207-265 19-77 (400)
346 1sq5_A Pantothenate kinase; P- 94.2 0.02 6.8E-07 56.1 2.6 24 248-271 82-105 (308)
347 2b6h_A ADP-ribosylation factor 94.1 0.068 2.3E-06 47.9 6.1 23 246-268 29-51 (192)
348 2wjy_A Regulator of nonsense t 94.1 0.034 1.2E-06 61.8 4.7 24 247-270 372-395 (800)
349 2zj8_A DNA helicase, putative 94.1 0.2 7E-06 54.7 10.9 18 246-263 39-56 (720)
350 3kta_A Chromosome segregation 94.1 0.021 7.2E-07 50.8 2.5 24 248-271 28-51 (182)
351 4f4c_A Multidrug resistance pr 94.1 0.025 8.6E-07 66.3 3.8 27 244-270 1103-1129(1321)
352 2ocp_A DGK, deoxyguanosine kin 94.1 0.023 7.8E-07 53.3 2.8 25 247-271 3-27 (241)
353 1fzq_A ADP-ribosylation factor 94.1 0.043 1.5E-06 48.6 4.5 23 247-269 17-39 (181)
354 3v9p_A DTMP kinase, thymidylat 94.1 0.03 1E-06 52.5 3.6 30 248-277 27-63 (227)
355 1zj6_A ADP-ribosylation factor 94.1 0.1 3.5E-06 46.1 7.1 23 246-268 16-38 (187)
356 1p5z_B DCK, deoxycytidine kina 94.0 0.01 3.6E-07 56.5 0.4 25 247-271 25-49 (263)
357 1bif_A 6-phosphofructo-2-kinas 94.0 0.014 4.8E-07 60.7 1.3 27 246-272 39-65 (469)
358 1xjc_A MOBB protein homolog; s 94.0 0.026 9E-07 50.4 2.9 32 247-278 5-39 (169)
359 4dkx_A RAS-related protein RAB 94.0 0.049 1.7E-06 50.5 4.9 21 248-268 15-35 (216)
360 2il1_A RAB12; G-protein, GDP, 94.0 0.04 1.4E-06 49.3 4.1 21 248-268 28-48 (192)
361 3iuy_A Probable ATP-dependent 94.0 0.18 6.2E-06 46.3 8.8 18 246-263 57-74 (228)
362 1xti_A Probable ATP-dependent 94.0 0.2 6.9E-06 49.6 9.7 55 209-266 8-65 (391)
363 2fh5_B SR-beta, signal recogni 93.9 0.046 1.6E-06 49.6 4.4 24 246-269 7-30 (214)
364 2f9l_A RAB11B, member RAS onco 93.9 0.025 8.6E-07 51.0 2.6 23 247-269 6-28 (199)
365 1sky_E F1-ATPase, F1-ATP synth 93.9 0.04 1.4E-06 57.2 4.4 23 248-270 153-175 (473)
366 3tif_A Uncharacterized ABC tra 93.9 0.018 6.2E-07 54.2 1.6 26 246-271 31-56 (235)
367 2j37_W Signal recognition part 93.8 0.033 1.1E-06 58.5 3.6 34 246-279 101-137 (504)
368 2dyk_A GTP-binding protein; GT 93.8 0.028 9.7E-07 48.1 2.7 22 248-269 3-24 (161)
369 2cbz_A Multidrug resistance-as 93.8 0.019 6.5E-07 54.1 1.6 25 246-270 31-55 (237)
370 1w36_D RECD, exodeoxyribonucle 93.8 0.04 1.4E-06 59.3 4.4 24 247-270 165-188 (608)
371 1z2a_A RAS-related protein RAB 93.8 0.026 9.1E-07 48.6 2.4 23 247-269 6-28 (168)
372 1g8f_A Sulfate adenylyltransfe 93.8 0.038 1.3E-06 58.0 4.0 26 247-272 396-421 (511)
373 1oix_A RAS-related protein RAB 93.7 0.024 8.3E-07 50.9 2.2 23 248-270 31-53 (191)
374 3b85_A Phosphate starvation-in 93.7 0.022 7.5E-07 52.6 1.9 23 247-269 23-45 (208)
375 1lw7_A Transcriptional regulat 93.7 0.029 9.8E-07 56.3 2.8 28 246-273 170-197 (365)
376 1ewq_A DNA mismatch repair pro 93.7 0.071 2.4E-06 58.8 6.1 24 246-269 576-599 (765)
377 3fht_A ATP-dependent RNA helic 93.6 0.4 1.4E-05 47.7 11.3 57 207-263 23-81 (412)
378 2onk_A Molybdate/tungstate ABC 93.6 0.025 8.6E-07 53.4 2.2 25 247-271 25-49 (240)
379 3tmk_A Thymidylate kinase; pho 93.6 0.041 1.4E-06 51.2 3.6 29 247-275 6-34 (216)
380 2www_A Methylmalonic aciduria 93.6 0.055 1.9E-06 54.0 4.7 24 247-270 75-98 (349)
381 2ew1_A RAS-related protein RAB 93.6 0.036 1.2E-06 50.4 3.0 23 247-269 27-49 (201)
382 3bgw_A DNAB-like replicative h 93.6 0.042 1.5E-06 56.7 3.9 38 242-279 193-233 (444)
383 2oap_1 GSPE-2, type II secreti 93.6 0.019 6.6E-07 60.4 1.4 62 246-307 260-343 (511)
384 2pcj_A ABC transporter, lipopr 93.5 0.017 5.8E-07 54.0 0.8 25 247-271 31-55 (224)
385 4a1f_A DNAB helicase, replicat 93.5 0.049 1.7E-06 54.2 4.1 38 242-279 42-82 (338)
386 2o8b_B DNA mismatch repair pro 93.5 0.12 4E-06 59.0 7.7 22 246-267 789-810 (1022)
387 2xxa_A Signal recognition part 93.4 0.043 1.5E-06 56.5 3.6 37 245-281 99-139 (433)
388 1b0u_A Histidine permease; ABC 93.4 0.024 8.3E-07 54.3 1.7 25 247-271 33-57 (262)
389 3lxw_A GTPase IMAP family memb 93.4 0.08 2.7E-06 49.9 5.3 22 247-268 22-43 (247)
390 2xzl_A ATP-dependent helicase 93.3 0.048 1.6E-06 60.6 4.1 33 248-280 377-413 (802)
391 1q57_A DNA primase/helicase; d 93.3 0.042 1.4E-06 57.5 3.5 38 242-279 238-279 (503)
392 3p32_A Probable GTPase RV1496/ 93.3 0.059 2E-06 53.8 4.5 32 247-278 80-114 (355)
393 1sgw_A Putative ABC transporte 93.3 0.024 8.2E-07 52.7 1.4 26 246-271 35-60 (214)
394 3sop_A Neuronal-specific septi 93.3 0.03 1E-06 53.8 2.2 24 248-271 4-27 (270)
395 1mv5_A LMRA, multidrug resista 93.3 0.024 8.1E-07 53.6 1.5 25 246-270 28-52 (243)
396 2wji_A Ferrous iron transport 93.3 0.036 1.2E-06 48.3 2.5 22 248-269 5-26 (165)
397 1fuu_A Yeast initiation factor 93.3 0.24 8.1E-06 49.1 8.8 55 206-263 18-75 (394)
398 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.039 1.3E-06 48.1 2.7 23 247-269 8-30 (177)
399 1z08_A RAS-related protein RAB 93.2 0.041 1.4E-06 47.5 2.7 23 247-269 7-29 (170)
400 2ghi_A Transport protein; mult 93.2 0.027 9.3E-07 53.8 1.6 25 246-270 46-70 (260)
401 2nzj_A GTP-binding protein REM 93.2 0.039 1.3E-06 47.9 2.5 22 247-268 5-26 (175)
402 2zu0_C Probable ATP-dependent 93.2 0.033 1.1E-06 53.5 2.2 25 246-270 46-70 (267)
403 2pze_A Cystic fibrosis transme 93.2 0.025 8.5E-07 53.0 1.3 26 246-271 34-59 (229)
404 3cr8_A Sulfate adenylyltranfer 93.2 0.023 7.8E-07 60.4 1.2 25 247-271 370-394 (552)
405 1ky3_A GTP-binding protein YPT 93.2 0.042 1.4E-06 48.0 2.7 24 246-269 8-31 (182)
406 2zej_A Dardarin, leucine-rich 93.2 0.032 1.1E-06 49.6 2.0 21 248-268 4-24 (184)
407 1g6h_A High-affinity branched- 93.1 0.025 8.5E-07 54.0 1.3 25 247-271 34-58 (257)
408 2olj_A Amino acid ABC transpor 93.1 0.029 9.8E-07 53.8 1.7 26 246-271 50-75 (263)
409 3llu_A RAS-related GTP-binding 93.1 0.11 3.7E-06 46.6 5.5 23 247-269 21-43 (196)
410 2ixe_A Antigen peptide transpo 93.1 0.029 9.8E-07 54.1 1.6 26 246-271 45-70 (271)
411 2d2e_A SUFC protein; ABC-ATPas 93.1 0.03 1E-06 53.1 1.8 24 246-269 29-52 (250)
412 2ff7_A Alpha-hemolysin translo 93.0 0.026 8.9E-07 53.5 1.3 26 246-271 35-60 (247)
413 2j0s_A ATP-dependent RNA helic 93.0 0.47 1.6E-05 47.4 10.8 54 208-264 36-92 (410)
414 3fvq_A Fe(3+) IONS import ATP- 93.0 0.029 1E-06 56.3 1.6 24 247-270 31-54 (359)
415 2ffh_A Protein (FFH); SRP54, s 93.0 0.092 3.1E-06 53.9 5.4 34 246-279 98-134 (425)
416 1g16_A RAS-related protein SEC 93.0 0.038 1.3E-06 47.7 2.1 23 247-269 4-26 (170)
417 2gza_A Type IV secretion syste 93.0 0.032 1.1E-06 56.0 1.9 27 245-271 174-200 (361)
418 2it1_A 362AA long hypothetical 93.0 0.036 1.2E-06 55.7 2.2 24 247-270 30-53 (362)
419 2yyz_A Sugar ABC transporter, 92.9 0.037 1.2E-06 55.6 2.1 24 247-270 30-53 (359)
420 1vpl_A ABC transporter, ATP-bi 92.9 0.032 1.1E-06 53.2 1.7 25 246-270 41-65 (256)
421 3gfo_A Cobalt import ATP-bindi 92.9 0.029 9.8E-07 54.2 1.3 24 247-270 35-58 (275)
422 1f2t_A RAD50 ABC-ATPase; DNA d 92.9 0.047 1.6E-06 47.5 2.6 23 248-270 25-47 (149)
423 1z47_A CYSA, putative ABC-tran 92.9 0.037 1.3E-06 55.5 2.1 24 247-270 42-65 (355)
424 3rlf_A Maltose/maltodextrin im 92.9 0.037 1.3E-06 55.9 2.2 24 247-270 30-53 (381)
425 1ji0_A ABC transporter; ATP bi 92.9 0.029 9.8E-07 53.0 1.3 25 247-271 33-57 (240)
426 2f1r_A Molybdopterin-guanine d 92.9 0.024 8.3E-07 50.7 0.7 24 248-271 4-27 (171)
427 3q85_A GTP-binding protein REM 92.9 0.046 1.6E-06 47.3 2.5 21 248-268 4-24 (169)
428 3b1v_A Ferrous iron uptake tra 92.9 0.12 3.9E-06 49.8 5.6 22 248-269 5-26 (272)
429 1v43_A Sugar-binding transport 92.8 0.038 1.3E-06 55.7 2.2 24 247-270 38-61 (372)
430 2wjg_A FEOB, ferrous iron tran 92.8 0.04 1.4E-06 48.7 2.1 23 247-269 8-30 (188)
431 2qi9_C Vitamin B12 import ATP- 92.8 0.03 1E-06 53.3 1.3 26 247-272 27-52 (249)
432 3fmp_B ATP-dependent RNA helic 92.8 0.42 1.4E-05 49.2 10.2 53 208-263 91-148 (479)
433 2yz2_A Putative ABC transporte 92.8 0.034 1.2E-06 53.3 1.6 25 246-270 33-57 (266)
434 3lv8_A DTMP kinase, thymidylat 92.8 0.047 1.6E-06 51.4 2.6 25 247-271 28-52 (236)
435 1upt_A ARL1, ADP-ribosylation 92.8 0.051 1.7E-06 47.0 2.7 23 246-268 7-29 (171)
436 3ld9_A DTMP kinase, thymidylat 92.7 0.052 1.8E-06 50.7 2.9 26 247-272 22-47 (223)
437 1qhl_A Protein (cell division 92.6 0.028 9.6E-07 52.7 0.8 23 249-271 30-52 (227)
438 3eiq_A Eukaryotic initiation f 92.6 0.32 1.1E-05 48.5 8.7 54 208-264 39-95 (414)
439 1tf7_A KAIC; homohexamer, hexa 92.6 0.041 1.4E-06 58.1 2.1 27 243-269 36-64 (525)
440 2nq2_C Hypothetical ABC transp 92.6 0.033 1.1E-06 53.1 1.3 25 246-270 31-55 (253)
441 3d31_A Sulfate/molybdate ABC t 92.6 0.033 1.1E-06 55.7 1.3 24 247-270 27-50 (348)
442 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.033 1.1E-06 55.2 1.3 62 246-307 171-250 (330)
443 4tmk_A Protein (thymidylate ki 92.6 0.049 1.7E-06 50.5 2.4 23 248-270 5-27 (213)
444 3iby_A Ferrous iron transport 92.6 0.086 2.9E-06 50.1 4.2 22 248-269 3-24 (256)
445 2lkc_A Translation initiation 92.6 0.057 1.9E-06 47.1 2.7 23 246-268 8-30 (178)
446 2ihy_A ABC transporter, ATP-bi 92.5 0.034 1.2E-06 53.8 1.3 25 247-271 48-72 (279)
447 1g29_1 MALK, maltose transport 92.5 0.039 1.3E-06 55.7 1.8 24 247-270 30-53 (372)
448 4g1u_C Hemin import ATP-bindin 92.5 0.039 1.3E-06 53.0 1.7 26 246-271 37-62 (266)
449 3t34_A Dynamin-related protein 92.5 0.22 7.4E-06 49.6 7.3 21 248-268 36-56 (360)
450 1yrb_A ATP(GTP)binding protein 92.5 0.096 3.3E-06 49.2 4.4 32 247-278 15-48 (262)
451 2qm8_A GTPase/ATPase; G protei 92.3 0.068 2.3E-06 53.1 3.2 24 247-270 56-79 (337)
452 1m7b_A RND3/RHOE small GTP-bin 92.3 0.051 1.8E-06 48.1 2.1 23 247-269 8-30 (184)
453 3tw8_B RAS-related protein RAB 92.3 0.057 1.9E-06 47.1 2.4 22 247-268 10-31 (181)
454 2bme_A RAB4A, RAS-related prot 92.3 0.053 1.8E-06 47.7 2.1 23 247-269 11-33 (186)
455 2pjz_A Hypothetical protein ST 92.2 0.045 1.5E-06 52.5 1.7 25 246-270 30-54 (263)
456 2g6b_A RAS-related protein RAB 92.2 0.065 2.2E-06 46.8 2.7 23 247-269 11-33 (180)
457 2gf9_A RAS-related protein RAB 92.2 0.065 2.2E-06 47.6 2.7 23 247-269 23-45 (189)
458 4ag6_A VIRB4 ATPase, type IV s 92.2 0.13 4.5E-06 51.8 5.3 35 246-280 35-72 (392)
459 2wsm_A Hydrogenase expression/ 92.2 0.059 2E-06 49.2 2.4 25 247-271 31-55 (221)
460 1ko7_A HPR kinase/phosphatase; 92.1 0.069 2.3E-06 52.5 2.9 29 246-275 144-172 (314)
461 1mh1_A RAC1; GTP-binding, GTPa 92.1 0.065 2.2E-06 47.0 2.5 23 247-269 6-28 (186)
462 2gj8_A MNME, tRNA modification 92.1 0.048 1.6E-06 48.0 1.6 22 248-269 6-27 (172)
463 1j8m_F SRP54, signal recogniti 92.1 0.086 2.9E-06 51.4 3.6 35 246-280 98-135 (297)
464 2obl_A ESCN; ATPase, hydrolase 92.0 0.087 3E-06 52.5 3.6 28 248-275 73-100 (347)
465 1oxx_K GLCV, glucose, ABC tran 92.0 0.033 1.1E-06 55.8 0.5 24 247-270 32-55 (353)
466 3bwd_D RAC-like GTP-binding pr 92.0 0.071 2.4E-06 46.6 2.7 23 247-269 9-31 (182)
467 3c5c_A RAS-like protein 12; GD 92.0 0.072 2.5E-06 47.4 2.7 22 248-269 23-44 (187)
468 4hlc_A DTMP kinase, thymidylat 92.0 0.11 3.9E-06 47.6 4.1 29 249-277 5-35 (205)
469 2iwr_A Centaurin gamma 1; ANK 91.9 0.055 1.9E-06 47.3 1.8 23 247-269 8-30 (178)
470 3ihw_A Centg3; RAS, centaurin, 91.9 0.075 2.6E-06 47.3 2.7 22 248-269 22-43 (184)
471 1m2o_B GTP-binding protein SAR 91.9 0.062 2.1E-06 48.0 2.1 22 247-268 24-45 (190)
472 3gd7_A Fusion complex of cysti 91.8 0.051 1.7E-06 55.2 1.6 25 246-270 47-71 (390)
473 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.067 2.3E-06 55.5 2.6 28 243-270 135-162 (460)
474 1vg8_A RAS-related protein RAB 91.8 0.077 2.6E-06 47.6 2.7 24 246-269 8-31 (207)
475 1svi_A GTP-binding protein YSX 91.8 0.05 1.7E-06 48.4 1.4 24 246-269 23-46 (195)
476 2dpy_A FLII, flagellum-specifi 91.8 0.11 3.9E-06 53.4 4.2 28 247-274 158-185 (438)
477 3gj0_A GTP-binding nuclear pro 91.8 0.057 2E-06 49.4 1.8 23 247-269 16-39 (221)
478 2a5j_A RAS-related protein RAB 91.7 0.077 2.6E-06 47.2 2.6 22 248-269 23-44 (191)
479 2gks_A Bifunctional SAT/APS ki 91.7 0.074 2.5E-06 56.4 2.9 32 247-278 373-407 (546)
480 3reg_A RHO-like small GTPase; 91.7 0.08 2.7E-06 47.2 2.7 23 247-269 24-46 (194)
481 1tq4_A IIGP1, interferon-induc 91.7 0.091 3.1E-06 53.7 3.4 22 248-269 71-92 (413)
482 2bbs_A Cystic fibrosis transme 91.7 0.046 1.6E-06 53.2 1.1 25 246-270 64-88 (290)
483 2cxx_A Probable GTP-binding pr 91.6 0.061 2.1E-06 47.4 1.8 22 248-269 3-24 (190)
484 3cph_A RAS-related protein SEC 91.6 0.082 2.8E-06 47.7 2.7 23 247-269 21-43 (213)
485 1ls1_A Signal recognition part 91.5 0.15 5.1E-06 49.5 4.6 34 246-279 98-134 (295)
486 2orv_A Thymidine kinase; TP4A 91.5 1.1 3.8E-05 41.9 10.3 30 248-277 21-53 (234)
487 1pui_A ENGB, probable GTP-bind 91.5 0.037 1.2E-06 50.1 0.1 24 246-269 26-49 (210)
488 3t5g_A GTP-binding protein RHE 91.4 0.075 2.6E-06 46.6 2.1 22 247-268 7-28 (181)
489 1knx_A Probable HPR(Ser) kinas 91.4 0.067 2.3E-06 52.5 1.9 29 246-275 147-175 (312)
490 2hf9_A Probable hydrogenase ni 91.4 0.079 2.7E-06 48.5 2.3 25 246-270 38-62 (226)
491 4djt_A GTP-binding nuclear pro 91.4 0.03 1E-06 51.1 -0.6 22 247-268 12-33 (218)
492 3nh6_A ATP-binding cassette SU 91.4 0.04 1.4E-06 54.1 0.3 28 244-271 78-105 (306)
493 3k53_A Ferrous iron transport 91.4 0.063 2.1E-06 51.2 1.7 23 247-269 4-26 (271)
494 2bcg_Y Protein YP2, GTP-bindin 91.4 0.076 2.6E-06 47.8 2.1 23 247-269 9-31 (206)
495 2vp4_A Deoxynucleoside kinase; 91.3 0.084 2.9E-06 49.1 2.4 28 248-276 22-49 (230)
496 3ch4_B Pmkase, phosphomevalona 91.3 0.13 4.5E-06 47.2 3.6 38 244-281 9-47 (202)
497 2qag_B Septin-6, protein NEDD5 91.3 0.081 2.8E-06 54.3 2.5 21 249-269 45-65 (427)
498 3pqc_A Probable GTP-binding pr 91.2 0.062 2.1E-06 47.5 1.4 23 247-269 24-46 (195)
499 2fu5_C RAS-related protein RAB 91.2 0.056 1.9E-06 47.5 1.0 23 247-269 9-31 (183)
500 3tui_C Methionine import ATP-b 91.2 0.087 3E-06 52.9 2.5 25 246-270 54-78 (366)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-40 Score=335.54 Aligned_cols=214 Identities=22% Similarity=0.318 Sum_probs=180.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+|++|+|.+++|++|.+.+..++.+|+.|+++|+++|+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 3466799999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
++..++.+|..+. .||||||||||+++..+. ....+.+.....++++||+.|||+.+. .+++||+|||+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~--~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNr 296 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV--EGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNR 296 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCS--CSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESC
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCC--CCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCC
Confidence 3577899998764 799999999999986333 222222345677899999999998765 56999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
|+.|||||+||||||.+|+||+|+.++|.+||+.++..... .......++... ..+|+|||...+.
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t--~G~SGADi~~l~~ 363 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKM--NGCSGADVKGVCT 363 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHC--CSCCHHHHHHHHH
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHC--CCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999875431 222334444333 2599999977653
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=334.45 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=180.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+|++|+|.+++|++|.+.+..++.+|++|.+.|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 4566799999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
++..++.+|..+. .||||||||||+++..+ .............++++||+.+|++.+. ++++||+|||+
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R--~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNr 330 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKR--YDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNK 330 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCC--SCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccC--CCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCC
Confidence 3567888887764 79999999999998743 3333333456678899999999998655 56999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
|+.|||||+||||||++|+||+|+.++|.+||+.++..... ....++.++... ..+|.|||...+.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T--~GfSGADI~~l~~ 397 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTK--DDLSGADIQAMCT 397 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHC--CSCCHHHHHHHHH
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC--CCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999875421 222334444332 3599999977653
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=330.87 Aligned_cols=214 Identities=24% Similarity=0.339 Sum_probs=180.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
-.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|++||+|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ------hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 285 ------NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 285 ------~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
...++.+|..+ .+||||||||||+++..+ .......+.....++++||+.|||+.+. ++++||+|||+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R--~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNr 329 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNR 329 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCC--SSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeeccccccccc--ccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCC
Confidence 46688888776 479999999999998743 2332333455678899999999998765 56999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 424 (474)
|+.|||||+||||||.+|+||+|+.++|.+||+.++.... .....+++.++..+ ++|+|||...+.
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK--KTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC--BCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999987542 11112344455444 599999987653
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-39 Score=332.87 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=180.5
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 204 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
.-.++.+|++|+|.+++|++|.+.+..|+.+|+.|++.|+++|+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ------ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 284 ------SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 284 ------~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
++..++.+|..+. .||||||||||+++..+ .....+.......+++.||+.|||+.+. ++++||+|||
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R--~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTN 328 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR--FDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATN 328 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCC--SSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECS
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhcc--CCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCC
Confidence 3567888887664 79999999999998633 2222222345567889999999998765 5699999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 356 HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 356 ~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
+|+.|||||+||||||.+|+||+|+.++|.+||+.+++.... ....+..++... .++|+|||...+.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t--~G~sGADi~~l~~ 396 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARST--DEFNGAQLKAVTV 396 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHC--SSCCHHHHHHHHH
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC--CCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999865421 222344444433 3599999977654
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=328.65 Aligned_cols=214 Identities=23% Similarity=0.331 Sum_probs=180.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
-.+..+|++|+|.+++|+.|.+.+..|+.+|++|.++|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 3556799999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
++..++.+|..+. .||||||||+|+++..+ .....+.+.....++++||+.|||+.+. .+++||+|||+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R--~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~ 320 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR--FDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNR 320 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSC--SSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccc--cCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCC
Confidence 3567889997764 79999999999998743 3333333455678899999999999776 45999999999
Q ss_pred CCCCCccccCCCccceEEEeC-CCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMS-YCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~-~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l~ 424 (474)
|+.|||||+||||||++|+|| +|+.++|..|++.++..... .......++... .++|+|||...+.
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t--~G~sgadi~~l~~ 388 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRN--DSLSGAVIAAIMQ 388 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHT--TTCCHHHHHHHHH
T ss_pred hhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHC--CCCCHHHHHHHHH
Confidence 999999999999999999997 89999999999999865421 222333443332 3599999977653
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=328.07 Aligned_cols=212 Identities=22% Similarity=0.308 Sum_probs=179.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
.+..+|++|+|.+++|++|.+.+..++..|+.|.++|+++|+|+|||||||||||++|+|+|++++.+++.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 4557999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 285 -----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 285 -----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
+..++.+|..+. +||||||||||.++..+ .....+.......+++.+|+.||+.... +.++||+|||+|
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R--~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrp 358 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR--FDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRP 358 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCC--SSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCT
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccc--cCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCc
Confidence 567888887764 79999999999998633 2322222445667889999999998655 569999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
+.|||||+||||||++|+||+|+.++|.+||+.++..... ....+..+++.. ..+|.|||...+
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T--~GfSGADI~~l~ 423 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLC--PNSTGAELRSVC 423 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHC--CSCCHHHHHHHH
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHC--CCCCHHHHHHHH
Confidence 9999999999999999999999999999999999875431 223344454443 259999997765
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-33 Score=312.28 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=160.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
..+..+|++++|.+++|+.|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
++..++++|..+. .||||||||||+++..++... ........+++++||.+|||+.+. ++++||+|||+
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~--~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~ 625 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI--GDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNR 625 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------CHHHHHHHHHHHSSCSS--SSEEEECC-CC
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC--CCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCC
Confidence 5788999998875 699999999999987443221 122345678899999999999765 55999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 424 (474)
|+.||||++||||||.+|++|+|+.++|.+||+.+++... .....+++.++..+ .+|++||...+.
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~--~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----CCC----------------CHHHHHH
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999987542 22223455555554 499999987664
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=2.4e-32 Score=301.51 Aligned_cols=209 Identities=24% Similarity=0.330 Sum_probs=177.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc---
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY--- 283 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~--- 283 (474)
+..+|++|+|.+++|++|.+.+..++..|+.|..+|..+|+|+|||||||||||+||+++|++++.+++.++++++.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 284 ---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 284 ---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
++..++.+|..+. +||||||||||.+++.++.. .....+.++++||..||++.+. ..++||+|||+++
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-----~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d 351 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-----HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-----CCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC-----CChHHHHHHHHHHHHHhccccc--CCEEEEEecCChh
Confidence 3577899998875 69999999999998643221 1345578899999999998765 4599999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
.|||+|+||||||.+|+++.|+.++|.+|++.++.... .....++..++.. ..++++|+...+.
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999986542 1112234444443 3599999976543
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=8.8e-29 Score=246.28 Aligned_cols=213 Identities=20% Similarity=0.325 Sum_probs=173.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
..++.+|++|+|.+++++.|.+.+..++..++.|...|..+++++|||||||||||++|+++|++++.+++.+++.++.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
....++.+|..+. .|+||||||||.+...++... ..........++.||..++++... .+++||+|||+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~--~~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~atn~ 163 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI--GDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNR 163 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT--CCSSCSCCHHHHHHHHHHHSSCTT--SSEEEEEEESC
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc--CCcchHHHHHHHHHHHHhhcccCC--CCEEEEEecCC
Confidence 3456778887764 689999999999976432211 111233456788899999987543 56999999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCC-CCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS-HSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
++.||++++|||||+..|+++.|+.++|.+|++.++...... ......++.. ...++++++...+
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~--~~g~sg~dl~~l~ 229 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADLTEIC 229 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT--CSSCCHHHHHHHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH--cCCCCHHHHHHHH
Confidence 999999999999999999999999999999999998754321 2223344332 3458999887654
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=239.07 Aligned_cols=211 Identities=19% Similarity=0.294 Sum_probs=162.1
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
+..+|++|+|.+++|+.|.+.+..++..++.|+.+|..+++|++|+||||||||+|++++|+.++.+++.++..++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999887752
Q ss_pred ----hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 285 ----NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 285 ----~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
...++.+|..+ ..|+++++||||.+...++.. . .......+++++..|+|.... ..++++++||+|+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~---~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--E---TGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPD 157 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGG
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--c---chHHHHHHHHHHHhhhccccc--CCEEEEeecCChh
Confidence 34577778765 468999999999886532211 1 112345678899999987543 4588999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcC---CCCCHHHHHHHHh
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQS---TDVTPAEVAEELM 424 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~---~~~tpa~i~~~l~ 424 (474)
.|||+++||||||.+|++++|+.++|.+|++.++..... ......+++.++.. ..+|++|+...+.
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 999999999999999999999999999999999854210 11111233444443 3799999977554
No 11
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=3.5e-27 Score=228.43 Aligned_cols=212 Identities=24% Similarity=0.340 Sum_probs=152.5
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC---
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS--- 284 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~--- 284 (474)
+.+|++|+|.+++|+.+.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 5689999999999999988765 577888999999999999999999999999999999999999999999987752
Q ss_pred ---hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCC
Q 011935 285 ---NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 359 (474)
Q Consensus 285 ---~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~ 359 (474)
...++.+|..+. .++||||||+|.+...+...... .........+..+++.+++.... ..+++|+|||.++.
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~~~--~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG-FSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRADI 157 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHTCCTT--CCEEEEEEESCGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccC-ccchhHHHHHHHHHHHhhCcCCC--CCEEEEecCCChhh
Confidence 345667776654 58999999999997533211110 01233456788899999876433 56899999999999
Q ss_pred CCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 360 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 360 Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
+|++++|||||+..++++.|+.++|.++++.++...+...........+.... .++++++...+
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999876532222211224444433 48888876554
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=3.2e-27 Score=232.13 Aligned_cols=213 Identities=23% Similarity=0.290 Sum_probs=170.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
..++.+|++|+|.+++++.|.+.+..++..++.|...|...++++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999888752
Q ss_pred ------hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 285 ------NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 285 ------~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
...+..+|..+ ..|+||||||||.+...+ .....+........+..+++.++++... ..++||+|||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~ 165 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR--TDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNR 165 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCC--SSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSC
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccC--ccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCC
Confidence 34456666554 367999999999997532 2222222344567788888888876443 46899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
++.+|++++|||||+..++++.|+.+++.++++.++..... .......+.... ..++++++...+
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~i~~l~ 231 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMT--EGCVGAELKAIC 231 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHC--TTCCHHHHHHHH
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHc--CCCCHHHHHHHH
Confidence 99999999999999999999999999999999999865421 122233333332 357888886544
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=3.4e-27 Score=247.91 Aligned_cols=210 Identities=23% Similarity=0.361 Sum_probs=165.6
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
...+|++|+|.+++|+++.+.+. ++..+..|..+|...++|+||+||||||||++++++|++++.+++.++++++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 45689999999999999988765 677888999999999999999999999999999999999999999999888752
Q ss_pred ----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 285 ----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 285 ----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
...++.+|..+. .|+||||||||.+...++ ....+.......++++||..+|++... .+++||+|||+++
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~--~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~ 165 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG--AGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPD 165 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc--cccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChh
Confidence 356777887764 689999999999975322 111122344567889999999987543 4599999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHH
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEEL 423 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 423 (474)
.|||+++|||||+..|.++.|+.++|.+|++.++......... ++..+... ..++++++...+
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHH
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCcHHHHHHHH
Confidence 9999999999999999999999999999999988754211111 13334433 358888886654
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.8e-27 Score=234.53 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=169.6
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-CCcEEEEeccccc-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-RFDIYDLELTSIY- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-~~~~~~l~~~~~~- 283 (474)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 45678999999999999999999999999988874 35677899999999999999999999999 8999999988765
Q ss_pred -----ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
....++.+|..+ .+|+||||||||.+...+.. . ........++.|+..++++... ..+++||+|||.
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~--~---~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~ 158 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE--N---ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNI 158 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS--C---CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc--c---cchHHHHHHHHHHHHHhccccc-CCCEEEEEecCC
Confidence 346677887665 46899999999999763221 1 1234567788999999987532 356899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHHh
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 424 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 424 (474)
++.+|++++| ||+..|+++.|+.++|..|++.++.... ......+++.++... .++++++...+.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ-NSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC-BCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999 9999999999999999999999987542 112345666676654 499999976543
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=2.3e-26 Score=223.02 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=158.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
..++.+|++|+|.+++++.+.+.+. ++..++.|+..|...++|+||+||||||||++++++|+.++.+++.+++.++.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3456789999999999999988665 57778888889999999999999999999999999999999999999988764
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
....++.+|..+. .++++||||||.+...+. .............++.++..++++... ..++||+|||.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~--~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~~tn~ 159 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG--AGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNR 159 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS--TTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC--CCcCCCchHHHHHHHHHHHHhhCcccC--CCEEEEEeeCC
Confidence 2456777887764 478999999999865221 111111233446788999999987543 55899999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHH
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEE 422 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 422 (474)
++.+|++++|||||+..|+++.|+.++|.+|++.++........ ..+..+.... .++++++...
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999864321111 1122233332 3577777543
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=1.2e-26 Score=232.99 Aligned_cols=212 Identities=17% Similarity=0.240 Sum_probs=169.0
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
+...++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 34567789999999999999999999999988888776 45567899999999999999999999999999999998876
Q ss_pred cC------hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec
Q 011935 283 YS------NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT 354 (474)
Q Consensus 283 ~~------~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT 354 (474)
.+ ...++.+|..+ .+|+||||||||.+...+... .........+.|+..++++... ...++||+||
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~at 161 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-----ESEASRRIKTELLVQMNGVGND-SQGVLVLGAT 161 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-----------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEE
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-----cchHHHHHHHHHHHHhcccccc-CCceEEEEec
Confidence 42 35566777665 368999999999997633211 1234567788999999987533 3568999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCC-CCHHHHHHHHh
Q 011935 355 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEVAEELM 424 (474)
Q Consensus 355 N~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~-~tpa~i~~~l~ 424 (474)
|.++.||++++| ||+..|+++.|+.++|.+|++.++.... .......++.++.... ++++++...+.
T Consensus 162 n~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 162 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-CVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp SCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999 9999999999999999999999987652 1123455666666554 89999876543
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.93 E-value=5.1e-26 Score=231.58 Aligned_cols=209 Identities=17% Similarity=0.239 Sum_probs=164.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
.++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.+++.++.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999998888876 566778999999999999999999999999999999988764
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
....++.+|..+. .++||||||||.+...+.. . .........+.||..++++... ...++||+|||.+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~--~---~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~ 197 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE--G---ESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIP 197 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCG
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC--C---cchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCc
Confidence 3456777776653 7899999999999753221 1 1234566788899999987432 3468999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHHh
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 424 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 424 (474)
+.||++++| ||+..|+++.|+.++|..|++.++..... .....+++.++... .+++++|...+.
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999 99999999999999999999999875421 11234555665544 489999976543
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=1.1e-25 Score=237.93 Aligned_cols=208 Identities=24% Similarity=0.334 Sum_probs=168.9
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
.+.+|++|+|.+++++.|.+.+..++..++.|..+|.++++++|||||||||||++|+++|++++.+++.++|+++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred ----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 285 ----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 285 ----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
...++.+|..+. .|+||||||||.+...+.. . ........++.|+..+++.... ..++||+|||+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~--~---~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK--T---HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS--C---CCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc--c---cchHHHHHHHHHHHHhhccccC--CceEEEEecCCcc
Confidence 345677777664 5789999999999763221 1 1233457788899999987543 5699999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHH
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEEL 423 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 423 (474)
.||++++|+|||+..|+++.|+.++|.++++.++.... .....++..++.. ..++++++...+
T Consensus 352 ~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--CcchhhHHHHHHHccCCcHHHHHHHH
Confidence 99999999999999999999999999999999986542 1111123333333 358888876543
No 19
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=2.4e-26 Score=223.97 Aligned_cols=212 Identities=25% Similarity=0.375 Sum_probs=157.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
.++.+|++|+|.+++++.+.+.+. ++..++.|...|...++|+|||||||||||++|+++|++++.+++.++++.+..
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345689999999999999988665 578899999999999999999999999999999999999999999998877642
Q ss_pred -----hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 285 -----NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 285 -----~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
...++.+|..+ ..++||||||+|.+...+...... .........++.|+..+++.... ...++||+|||.+
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~ 161 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV-SGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRP 161 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCC
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccC-CCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCc
Confidence 23344555544 367999999999997532211111 11222345578888888876432 3458999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEE 422 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 422 (474)
+.+|++++|+|||+..|+++.|+.++|.++++.++........ ..++.+.... .++++++...
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~g~~g~dl~~l 225 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLAND--VNLQEVAKLTAGLAGADLANI 225 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSS--CCTTTTTSSSCSSCHHHHHHH
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCc--cCHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999865321111 1123333322 3677666543
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=3e-25 Score=232.43 Aligned_cols=210 Identities=18% Similarity=0.239 Sum_probs=165.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-CCcEEEEeccccc
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-RFDIYDLELTSIY 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-~~~~~~l~~~~~~ 283 (474)
..++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 356678999999999999999999999888887764 34567899999999999999999999999 8999999988774
Q ss_pred ------ChhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 284 ------SNSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 284 ------~~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
....++.+|..+ .+|+||||||||.+...+... ........++.||..++++... ..+++||+|||
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn 279 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-----ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATN 279 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-----CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEES
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-----cccHHHHHHHHHHHHHhCcccC-CCCEEEEecCC
Confidence 235567777655 468999999999997532211 1234567788999999987532 35689999999
Q ss_pred CCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHHh
Q 011935 356 HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 424 (474)
Q Consensus 356 ~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 424 (474)
.++.||++++| ||+..|+++.|+.++|..|++.++...+. .....+++.++... .+++++|...+.
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999 99999999999999999999999875421 11234555565544 489999976543
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=6.1e-25 Score=232.01 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=163.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC--
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS-- 284 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~-- 284 (474)
++.+|++|+|.+++++++.+.+. ++..+..|..+|...++|+||+||||||||+|+++||++++.+++.+++.++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999988665 567788899999999999999999999999999999999999999999987742
Q ss_pred ----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC
Q 011935 285 ----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 358 (474)
Q Consensus 285 ----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~ 358 (474)
...++.+|..+. .|+|+||||||.+...+.. ...........++++||..|++.... ..++++++||+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~--~~~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~ 180 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS--GVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPD 180 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS--STTTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc--CcCCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChh
Confidence 245677777764 5799999999998653221 11111233456789999999987543 4589999999999
Q ss_pred CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCC-CCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 359 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 359 ~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~-~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
.|||+++||||||.+|+++.|+.++|.+|++.++..... ..... ..+.... .++++|+...+
T Consensus 181 ~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l---~~lA~~t~G~~gadL~~lv 244 (499)
T 2dhr_A 181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL---ALLAKRTPGFVGADLENLL 244 (499)
T ss_dssp GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTT---HHHHTTSCSCCHHHHHHHH
T ss_pred hcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHH---HHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999999988754321 11122 2333332 47888876654
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=3.8e-24 Score=207.02 Aligned_cols=185 Identities=24% Similarity=0.369 Sum_probs=147.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
..++.+|++++|.+++++++.+... .+..+..+..++...++|++|+||||||||++++++|+.++..++.++..++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 3456699999999999999987655 45678889999999999999999999999999999999999999998876543
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
....+..+|..+. .++++++||||.+...+... ...........++.++..+++.... ..++++++||+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~--~~~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~a~t~~ 163 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG--VGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNR 163 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----------CHHHHHHHHHHHHHHHTCCTT--CCEEEEEEESC
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc--ccccchHHHHHHHHHHHHHhCCCCC--CCEEEEEccCC
Confidence 1245667777764 57999999999886432210 0011223456678899999876443 44788899999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|+.+|++++|||||+..|+++.|+.++|.+|++.+...
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 201 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999988753
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=222.72 Aligned_cols=212 Identities=23% Similarity=0.284 Sum_probs=162.1
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 203 ~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
+...++.+|++|+|.+.+++.|.+.+..+...++.|...+. +++++|||||||||||++|+++|++++.+++.+++.++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 34567889999999999999999999999888888887764 46899999999999999999999999999999999887
Q ss_pred cC------hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec
Q 011935 283 YS------NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT 354 (474)
Q Consensus 283 ~~------~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT 354 (474)
.. ...++.+|..+ .+++||||||||.++..+... ........+..|+..+++........++||+||
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 259 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG-----EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-------------CTHHHHHHHHHHHHHHHC-----CEEEEEEE
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc-----cchHHHHHHHHHHHHhhcccccCCCCEEEEEec
Confidence 52 34566666554 367999999999997632211 123456777889999998766555678999999
Q ss_pred CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 355 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 355 N~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
|.++.||++++| ||+..|+++.|+.+++..+++.++...+ .......++.+.... .++++++...+
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999 9999999999999999999999987642 122233445555433 47777775543
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=219.19 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=162.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
.++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3567899999999999999999999888888777665 56789999999999999999999999999999999988753
Q ss_pred -----hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 285 -----NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 285 -----~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
...++.+|..+ .+++||||||||.+...+.. .........++.||..+++........++||+|||.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 24456666554 36899999999999753211 1123456678889999998765555678999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCC-CCCHHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 423 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 423 (474)
+.+|++++| ||+..++++.|+.+++.+++..++...+ .......++.++... .++++++...+
T Consensus 232 ~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 232 QEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp GGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999 9999999999999999999999886542 111234455555544 48888886644
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=8.4e-24 Score=209.00 Aligned_cols=209 Identities=22% Similarity=0.283 Sum_probs=157.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
.++.+|++++|.+++++.+.+.+..+...++.|...+ .+++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4677899999999999999999998888888777665 45689999999999999999999999999999999987752
Q ss_pred -----hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC-CCCceEEEEecCC
Q 011935 285 -----NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS-CGDERIIVFTTNH 356 (474)
Q Consensus 285 -----~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~-~~~~~iiI~tTN~ 356 (474)
...++.+|..+ .+++||||||+|.+........ ........+.|+..+++.... .+..++||+|||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-----HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC----------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-----chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 24455566544 4689999999999976332111 223355677888888876532 2346889999999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHH
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEEL 423 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 423 (474)
++.+|++++| ||+..++++.|+.+++..+++.++...+ .......+..+... ..++++++...+
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999 9999999999999999999999886542 11122334444433 347777775543
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=2.9e-26 Score=256.11 Aligned_cols=213 Identities=21% Similarity=0.327 Sum_probs=166.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc--
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY-- 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~-- 283 (474)
.+..+|++++|.+++|+.+.+.+..++..+..|...|..++.++|||||||||||++|+++|++++.+++.++++++.
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 445689999999999999999888888888888888999999999999999999999999999999999999988864
Q ss_pred ----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 284 ----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 284 ----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
....++.+|..+. .|+||||||||.+...+. ............+++.||+.||++... .+++||+|||++
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~--~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~ 626 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG--GNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRP 626 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTT--TCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSC
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhcc--CCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCc
Confidence 3467888887764 689999999999976332 111111234567889999999998554 568999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHHHh
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 424 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 424 (474)
+.||||++|||||+.+|++|+|+.+++..|++.++..... ....++..++.. ..+|++++...+.
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV--AKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC--CcccCHHHHHHhccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999865421 111122333332 3488888876543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.90 E-value=4.5e-23 Score=202.41 Aligned_cols=185 Identities=24% Similarity=0.369 Sum_probs=147.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc-
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY- 283 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~- 283 (474)
..++.+|++++|.+++++++.+... .+..+..+..++...++|++|+||||||||+|+++||+.++..++.+++.++.
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3467799999999999999987655 45677889999999999999999999999999999999999999999876653
Q ss_pred -----ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC
Q 011935 284 -----SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 356 (474)
Q Consensus 284 -----~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~ 356 (474)
....+..+|..+. .++++++||||.+....... ...........+..++..+++.... ..++++++||+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~--~~~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~a~t~~ 187 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG--VGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNR 187 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----------CHHHHHHHHHHHHHHTTCCTT--CCEEEEEEESC
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc--cCCcchHHHHHHHHHHHHHhCCCCC--CCEEEEEecCC
Confidence 1244666777653 57999999999886422210 0011223456678888888876432 44788899999
Q ss_pred CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 357 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 357 ~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|+.||++++|||||+..|+++.|+.++|.+|++.++..
T Consensus 188 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 225 (278)
T ss_dssp TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999988753
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=1.2e-23 Score=208.64 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=116.4
Q ss_pred HhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC------hhHHHHHHHhh------cCCcEEEEeccc
Q 011935 240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS------NSDLRRILLST------TNRSILVIEDVD 307 (474)
Q Consensus 240 ~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~------~~~l~~l~~~~------~~~sIl~iDeiD 307 (474)
..+..+|+|+|||||||||||++|+++|++++.+++.++++++.+ ...++.+|..+ ..++||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 346778899999999999999999999999999999999887752 34567777666 268999999999
Q ss_pred ccccccccCCCCCCCCCchhhHHhhHHhhhcCcc---------cCCCCceEEEEecCCCCCCCccccCCCccceEEEeCC
Q 011935 308 CSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW---------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~---------~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~ 378 (474)
++.+..+ + ........+...+.|++.+|+.. .....+++||+|||+++.||++++|||||+..|++
T Consensus 110 ~~~~~~~--~-~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~-- 184 (293)
T 3t15_A 110 AGAGRMG--G-TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-- 184 (293)
T ss_dssp -----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--
T ss_pred hhcCCCC--C-CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--
Confidence 9875221 1 11112234566688888887542 11234689999999999999999999999999974
Q ss_pred CCHHHHHHHHHHhhcccCCCCCcHHHHHhhhc
Q 011935 379 CTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ 410 (474)
Q Consensus 379 p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~ 410 (474)
|+.++|.+|++.++... ......++.+..
T Consensus 185 P~~~~r~~Il~~~~~~~---~~~~~~l~~~~~ 213 (293)
T 3t15_A 185 PTREDRIGVCTGIFRTD---NVPAEDVVKIVD 213 (293)
T ss_dssp CCHHHHHHHHHHHHGGG---CCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHhccCC---CCCHHHHHHHhC
Confidence 69999999999888643 223445555443
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=8.1e-22 Score=220.19 Aligned_cols=208 Identities=24% Similarity=0.337 Sum_probs=166.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS- 284 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~- 284 (474)
.++.+|++|+|.+++++.|.+.+..++..++.|..++..++.++||+||||||||+++++||+.++.+++.+++.++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred -----hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 285 -----NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 285 -----~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
...++.+|..+. .++++||||||.+....+.. ........+..|+..+++.... ..+++|+|||++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-----~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~ 350 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-----HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRP 350 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-----CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-----cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCc
Confidence 355677776653 68999999999997632211 1233456778899999987654 458999999999
Q ss_pred CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CCCCHHHHHHH
Q 011935 358 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEE 422 (474)
Q Consensus 358 ~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~~tpa~i~~~ 422 (474)
+.+|+++.|+|||+..|.++.|+.++|.++++.+........ ..++..+... ..++.+++...
T Consensus 351 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~--~~~l~~la~~t~g~~g~dl~~l 414 (806)
T 1ypw_A 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD--DVDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp TTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCT--TCCTHHHHHSCSSCCHHHHHHH
T ss_pred hhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcc--cchhHHHHHhhcCcchHHHHHH
Confidence 999999999999999999999999999999998876432111 1122333332 35777776554
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=1.5e-20 Score=197.31 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=118.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC--CcEEEEeccccc
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR--FDIYDLELTSIY 283 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~--~~~~~l~~~~~~ 283 (474)
.+...|++++|.+++++.+...+..+ ..|..+++|+|||||||||||++|+++|++++ .+++.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 34456899999999999988766533 23666789999999999999999999999999 899999998876
Q ss_pred C-----hhHHHHHHHhh-----cCCcEEEEecccccccccccCCCCCCCCCchh---------------hHHhhHHhhhc
Q 011935 284 S-----NSDLRRILLST-----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTK---------------LTLSGILNFID 338 (474)
Q Consensus 284 ~-----~~~l~~l~~~~-----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~---------------~~l~~LL~~id 338 (474)
+ ...+++.|..+ ..|+||||||||.++..+........ ..... .....++..++
T Consensus 103 ~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY-GKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCc-chHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 3 23478888876 36899999999999874432211110 01111 11223444554
Q ss_pred CcccCCCCceEEEEecCCCCCCCccccCCCccce--EEEeCCCCH
Q 011935 339 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDV--HINMSYCTV 381 (474)
Q Consensus 339 g~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~--~I~~~~p~~ 381 (474)
......++.++|++|||+++.+|++++||||||. .+.+|.|+.
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 2222334456666899999999999999999998 566777754
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=9.4e-19 Score=175.87 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=133.9
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.|.. ...|.+|++++|.+..++.+...+..... +.....++||+||||||||++|+++|+.++.+++.++
T Consensus 18 ~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 18 TYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 4643 45677999999999999999887775532 1234568999999999999999999999999999999
Q ss_pred cccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCccc--------------CC
Q 011935 279 LTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWS--------------SC 344 (474)
Q Consensus 279 ~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~--------------~~ 344 (474)
+..+.....+...+.....+++|||||||.+.. .....|+..++...- ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNLSEGDILFIDEIHRLSP----------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH----------------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred chhccchhHHHHHHHhccCCCEEEEechhhcCH----------------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence 998877788888888888899999999998832 234455555543210 00
Q ss_pred CCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 345 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 345 ~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
-..+++|++||....++++|++ ||+..|+++.|+.+++..++..+....
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~ 200 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKL 200 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhc
Confidence 0137899999999999999999 999999999999999999999887654
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=1.3e-18 Score=172.36 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=131.4
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCC---ccceecCCCCCcHHHHHHHHHHHhC-------CcEEEEec
Q 011935 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLR-------FDIYDLEL 279 (474)
Q Consensus 211 f~-~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rgiLL~GppGtGKT~la~alA~~l~-------~~~~~l~~ 279 (474)
++ +|+|.+++|+.|.+.+..+. .+..+.+.|...+ .++||+||||||||++|+++|+.++ .+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 69999999999999888655 4667777776543 4599999999999999999999883 38899988
Q ss_pred ccccC------hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 280 TSIYS------NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 280 ~~~~~------~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
.++.. ...+..+|..+ .++||||||+|.+....+ . .......++.|+..++.. ..++++|+|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~--~-----~~~~~~~~~~Ll~~l~~~----~~~~~~i~~ 175 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDN--E-----RDYGQEAIEILLQVMENN----RDDLVVILA 175 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC----------CCTHHHHHHHHHHHHHC----TTTCEEEEE
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCC--c-----ccccHHHHHHHHHHHhcC----CCCEEEEEe
Confidence 87752 34456666555 578999999999974211 1 123456677888888753 245788888
Q ss_pred cCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 354 TNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 354 TN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
||..+ .++|+|++ ||+.+|+|+.|+.+++..+++.++...
T Consensus 176 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp ECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 88653 35799999 999999999999999999999998754
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=8e-18 Score=167.70 Aligned_cols=191 Identities=19% Similarity=0.180 Sum_probs=140.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN 285 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~ 285 (474)
..|.+|++++|.+..++.+...+...... ...+.++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 46778999999999999988877654321 1345789999999999999999999999999999999988777
Q ss_pred hHHHHHHHh-hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-----cC---------CCCceEE
Q 011935 286 SDLRRILLS-TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-----SS---------CGDERII 350 (474)
Q Consensus 286 ~~l~~l~~~-~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-----~~---------~~~~~ii 350 (474)
..+...+.. ...+++|||||||.+.. .....|+..++... .. ....+++
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~----------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR----------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH----------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc----------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 778777776 56789999999998742 12334444444211 00 0124689
Q ss_pred EEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCCHHHHHHHH
Q 011935 351 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL 423 (474)
Q Consensus 351 I~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~i~~~l 423 (474)
|++||.++.++++|.+ ||+..+.++.|+.+++..++..++...+ .....+.++.+.....-.|.++.+.+
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999998 9998999999999999999999876442 11122334444444444565554433
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=1.8e-19 Score=186.87 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=73.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-------
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS------- 284 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 284 (474)
.|+|++++|+.+...+..+.+++..+...+. .+++++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999888777666554444433 36789999999999999999999999999999999876532
Q ss_pred -hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe-cCCCCCCCc
Q 011935 285 -NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT-TNHKERIDP 362 (474)
Q Consensus 285 -~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t-TN~~~~Ld~ 362 (474)
+..++.+|..+.. ++++||++.+.... .......+++.||..|||+.+.. .+ +++ ||+++.|||
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~~~--------~~~~e~rvl~~LL~~~dg~~~~~---~v-~a~~TN~~~~ld~ 161 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRARA--------EDVAEERILDALLPPAKNQWGEV---EN-HDSHSSTRQAFRK 161 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhccc--------hhhHHHHHHHHHHHHhhcccccc---cc-ccccccCHHHHHH
Confidence 3456666655432 34588888764311 12344678999999999986542 22 444 999999999
Q ss_pred cccCCCccceEEEeCCCCHH-HHHHHH
Q 011935 363 ALLRPGRMDVHINMSYCTVH-GFKVLA 388 (474)
Q Consensus 363 aLlrpGRfd~~I~~~~p~~~-~~~~l~ 388 (474)
||+||||||.+|+++.|+.. .+.+++
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999987 455554
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=1.2e-17 Score=164.88 Aligned_cols=173 Identities=15% Similarity=0.259 Sum_probs=121.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHh-CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-------
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS------- 284 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 284 (474)
.++|.+++++.+...+............. +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999988777643221111000 1134678999999999999999999999999999999987643
Q ss_pred -hhHHHHHHHhh-------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCccc------CCCCceEE
Q 011935 285 -NSDLRRILLST-------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWS------SCGDERII 350 (474)
Q Consensus 285 -~~~l~~l~~~~-------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~------~~~~~~ii 350 (474)
...+..++... ..++||||||||.+..... . ...+.......+.|+..+++... .....+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--Y--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--C--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--c--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 23456655533 2478999999999864221 0 00011122235667777775310 01135677
Q ss_pred EEe----cCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHh
Q 011935 351 VFT----TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 351 I~t----TN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~ 391 (474)
|++ ++.+..++|+|++ ||+..|+|+.|+.+++..+++..
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 887 5678899999998 99999999999999999999854
No 36
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=4.2e-18 Score=173.33 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=118.1
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHH-hCC-CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-------
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS------- 284 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~-~g~-~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 284 (474)
|+|++.+++.+...+............ .+. .++.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999998888655433211000 111 25678999999999999999999999999999999988752
Q ss_pred -hhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC--------------
Q 011935 285 -NSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS-------------- 343 (474)
Q Consensus 285 -~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~-------------- 343 (474)
...+..++... ..++||||||||.+...+. ....+.........+.||..|++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~--~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSD--NPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSS--CC---CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccc--ccccccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 23345555543 3578999999999865321 111111112234778899998853210
Q ss_pred ---CCCceEEEEecCCC----------CC-----------------------------------CCccccCCCccceEEE
Q 011935 344 ---CGDERIIVFTTNHK----------ER-----------------------------------IDPALLRPGRMDVHIN 375 (474)
Q Consensus 344 ---~~~~~iiI~tTN~~----------~~-----------------------------------Ld~aLlrpGRfd~~I~ 375 (474)
...++++|+++|.. .. +.|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 11234455554432 11 6788887 9999999
Q ss_pred eCCCCHHHHHHHHHHh
Q 011935 376 MSYCTVHGFKVLASNY 391 (474)
Q Consensus 376 ~~~p~~~~~~~l~~~~ 391 (474)
|++|+.+.+..|+...
T Consensus 253 ~~pl~~~~~~~I~~~~ 268 (363)
T 3hws_A 253 LNELSEEALIQILKEP 268 (363)
T ss_dssp CCCCCHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999999863
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=3.4e-16 Score=158.80 Aligned_cols=158 Identities=19% Similarity=0.192 Sum_probs=111.5
Q ss_pred CCC-CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC--cEEEEeccccc
Q 011935 207 HPS-TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTSIY 283 (474)
Q Consensus 207 ~~~-~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~~~ 283 (474)
.|. +|++++|.+..++.+........ .|..+++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 344 49999999999988755443222 24455689999999999999999999999975 67777754421
Q ss_pred C-------------------------------------------------------hhHHHHHHHhhc-----------C
Q 011935 284 S-------------------------------------------------------NSDLRRILLSTT-----------N 297 (474)
Q Consensus 284 ~-------------------------------------------------------~~~l~~l~~~~~-----------~ 297 (474)
. ...++..+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 0 223444443221 1
Q ss_pred CcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec-----------CCCCCCCccccC
Q 011935 298 RSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT-----------NHKERIDPALLR 366 (474)
Q Consensus 298 ~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT-----------N~~~~Ld~aLlr 366 (474)
|+||||||||.+. ....+.|+..++.. ...+++++|. |.+..++++|++
T Consensus 190 ~~vl~IDEi~~l~----------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s 249 (368)
T 3uk6_A 190 PGVLFIDEVHMLD----------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD 249 (368)
T ss_dssp BCEEEEESGGGSB----------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT
T ss_pred CceEEEhhccccC----------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHh
Confidence 5799999999883 23455666666542 1234444443 357889999999
Q ss_pred CCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 367 PGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 367 pGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
||.. |+|++|+.+++..+++.++...
T Consensus 250 --R~~~-i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 250 --RLLI-VSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp --TEEE-EEECCCCHHHHHHHHHHHHHHT
T ss_pred --hccE-EEecCCCHHHHHHHHHHHHHHc
Confidence 9976 8999999999999999887643
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3.1e-16 Score=145.89 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=117.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLEL 279 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~ 279 (474)
...|.+|++++|.++.++.+.+.+.. ....+++|+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 46788999999999998888765542 112359999999999999999999986 456888888
Q ss_pred ccccChhHHHHHHHhh--------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 280 TSIYSNSDLRRILLST--------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 280 ~~~~~~~~l~~l~~~~--------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
........+...+... ..+.+|+|||+|.+.. .....|+..++.. .....+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~l~~~l~~~----~~~~~~i 136 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------------DAQAALRRTMEMY----SKSCRFI 136 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------------HHHHHHHHHHHHT----TTTEEEE
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------------HHHHHHHHHHHhc----CCCCeEE
Confidence 7766555554444321 3578999999998742 1234455555532 2457888
Q ss_pred EecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 352 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 352 ~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
+|||.++.+++++.+ |+. .++++.|+.++...++..++..
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999 987 8999999999999999887754
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.70 E-value=8.4e-17 Score=160.74 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=120.8
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.|.. ...|.+|++++|.+++++.+...+. ....+..+|++||||||||++++++|+.++.+++.++
T Consensus 15 ~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 5643 5678999999999999888876655 1234567899999999999999999999999999999
Q ss_pred cccccChhHHHHHHHhh----c---CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 279 LTSIYSNSDLRRILLST----T---NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 279 ~~~~~~~~~l~~l~~~~----~---~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
+++.. ...++..+... + .+.||+|||+|.+.. ......|+..++... .+..+|
T Consensus 81 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------------~~~~~~L~~~le~~~----~~~~iI 140 (324)
T 3u61_B 81 GSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------------AESQRHLRSFMEAYS----SNCSII 140 (324)
T ss_dssp TTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------------HHHHHHHHHHHHHHG----GGCEEE
T ss_pred ccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------------HHHHHHHHHHHHhCC----CCcEEE
Confidence 88764 55555554432 1 568999999998841 123445666665432 347888
Q ss_pred EecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 352 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 352 ~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
+|||.+..+++++++ ||. .++|+.|+.+++..++..++
T Consensus 141 ~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp EEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999 995 69999999999877776654
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.70 E-value=3.5e-16 Score=152.51 Aligned_cols=167 Identities=17% Similarity=0.218 Sum_probs=116.5
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC-------
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS------- 284 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~------- 284 (474)
+.++|.++..+.+........ ......+..+++++||+||||||||++|+++|+.++.+++.+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 457788777777766433221 2233345667789999999999999999999999999999998875331
Q ss_pred hhHHHHHHHhh--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCc
Q 011935 285 NSDLRRILLST--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 362 (474)
Q Consensus 285 ~~~l~~l~~~~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~ 362 (474)
...++.+|..+ .+++||||||||.+++.... ........+..|+..+++... .+..++||+|||.++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~------~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI------GPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT------TTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC------ChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcch
Confidence 14566667664 35799999999998652211 122334556666666665432 3456789999999998888
Q ss_pred -cccCCCccceEEEeCCCCH-HHHHHHHHH
Q 011935 363 -ALLRPGRMDVHINMSYCTV-HGFKVLASN 390 (474)
Q Consensus 363 -aLlrpGRfd~~I~~~~p~~-~~~~~l~~~ 390 (474)
.+.+ ||+..|++|.++. ++...++..
T Consensus 183 ~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 5665 9999999987765 555555443
No 41
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=6.6e-17 Score=147.01 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=106.8
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEE
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYD 276 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~ 276 (474)
.|..|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 467899999999988887665431 235789999999999999999999987 688888
Q ss_pred EecccccC--------hhHHHHHHHh---hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 277 LELTSIYS--------NSDLRRILLS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 277 l~~~~~~~--------~~~l~~l~~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
+++..+.. ...+..++.. ...+.||+|||+|.+........ .......+.. .++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-----~~~~~~~l~~---~~~~------ 149 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-----AMDAGNMLKP---ALAR------ 149 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHH---HHHT------
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-----hHHHHHHHHH---hhcc------
Confidence 88776531 1234445443 34578999999999864221100 1111222222 2221
Q ss_pred CceEEEEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHH
Q 011935 346 DERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLA 388 (474)
Q Consensus 346 ~~~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~ 388 (474)
.++.+|++||.++ .+++++++ ||+ .|+++.|+.+++.+++
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 3467888888775 78999999 998 6999999999988764
No 42
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.66 E-value=2e-15 Score=141.97 Aligned_cols=155 Identities=17% Similarity=0.306 Sum_probs=116.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|..|++++|.+..++.+...+.. + ..++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 46788899999999999888776542 1 22457999999999999999999998753
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.........+..++.... .+.+|+|||+|.+. ...+..|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~----------------~~~~~~l~ 147 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------------RHSFNALL 147 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC----------------HHHHHHHH
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc----------------HHHHHHHH
Confidence 334444433223445666665532 46899999999873 23455667
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..++.. .....+|++||.+..+++++.+ |+ ..|+++.++.++..+++..++..
T Consensus 148 ~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 148 KTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp HHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 666542 3458888999999999999998 76 68999999999999999988754
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=9.9e-16 Score=163.13 Aligned_cols=174 Identities=16% Similarity=0.256 Sum_probs=118.7
Q ss_pred CCCcccccCCCCCCcccccChhHHHHHHHHHHHHHhh-HHHHHHhCC---CCCccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRR-KEFYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 198 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~-~~~~~~~g~---~~~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
..|.. ...|.+|++|+|.++.++.+.+.+..+... +..|...|. ++++++||+||||||||++|+++|++++.+
T Consensus 27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35743 567889999999999999998888765432 222333333 356799999999999999999999999999
Q ss_pred EEEEecccccChhHHHHHHH-------------hh-------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhH
Q 011935 274 IYDLELTSIYSNSDLRRILL-------------ST-------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGI 333 (474)
Q Consensus 274 ~~~l~~~~~~~~~~l~~l~~-------------~~-------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~L 333 (474)
++.+++++......+...+. .. ..+.||||||+|.+... .+..+..|
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~-------------~~~~l~~L 171 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG-------------DRGGVGQL 171 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT-------------STTHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh-------------hHHHHHHH
Confidence 99999998765443333322 11 35789999999998531 11224555
Q ss_pred HhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 334 LNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 334 L~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
++.++.. ...+|+|+++.....++ .+. |+...|.|+.|+.+++.+++......
T Consensus 172 ~~~l~~~----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 172 AQFCRKT----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp HHHHHHC----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 6555531 11233333333334443 454 44568999999999999888876643
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.5e-15 Score=158.64 Aligned_cols=151 Identities=19% Similarity=0.307 Sum_probs=113.3
Q ss_pred cCCCCCCcccccChhHH---HHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011935 205 LEHPSTFDTLAMDPELK---QMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS 281 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k---~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~ 281 (474)
...|.+|++++|++.++ +.+...+.. |. ..++|||||||||||++|++||+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 46789999999999988 555444431 11 268999999999999999999999999999998766
Q ss_pred ccChhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEec-
Q 011935 282 IYSNSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT- 354 (474)
Q Consensus 282 ~~~~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tT- 354 (474)
. ....++.++..+ ..+.||||||||.+.. .....||..++. ..+++|++|
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~----------------~~q~~LL~~le~------~~v~lI~att 142 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK----------------SQQDAFLPHIED------GTITFIGATT 142 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------------CCHHHHHT------TSCEEEEEES
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH----------------HHHHHHHHHHhc------CceEEEecCC
Confidence 4 455666666554 3578999999998842 123456666664 235555544
Q ss_pred -CCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 355 -NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 355 -N~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|....++++|++ |+. .+.|+.|+.+++..++..++..
T Consensus 143 ~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 143 ENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp SCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred CCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 444689999999 986 6779999999999999999865
No 45
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.64 E-value=2.3e-15 Score=153.67 Aligned_cols=174 Identities=17% Similarity=0.261 Sum_probs=112.9
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHH-----------------HhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYR-----------------RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~-----------------~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.|+|++++|+.|...+.....+..... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988754443322100 011234678999999999999999999999999999
Q ss_pred EEecccccC--------hhHHHHHHHhh------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc
Q 011935 276 DLELTSIYS--------NSDLRRILLST------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW 341 (474)
Q Consensus 276 ~l~~~~~~~--------~~~l~~l~~~~------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~ 341 (474)
.+++..+.. ...+..++... ..++||||||||.+...+. ......+.......+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~~~~~~~~Ll~~le~~~ 179 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE--NRSITRDVSGEGVQQALLKIVEGSL 179 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------------CHHHHHHHHHHHHCCE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC--CCceecccchHHHHHHHHHHhhccc
Confidence 999987641 22344554433 2679999999999865211 1111111222336777888887531
Q ss_pred ----cC-------------CCCceEEEEecCC-----------------------------------------CCCCCcc
Q 011935 342 ----SS-------------CGDERIIVFTTNH-----------------------------------------KERIDPA 363 (474)
Q Consensus 342 ----~~-------------~~~~~iiI~tTN~-----------------------------------------~~~Ld~a 363 (474)
.. ...++++|+|||. ...+.|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~ 259 (376)
T 1um8_A 180 VNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPE 259 (376)
T ss_dssp EC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHH
T ss_pred eecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChH
Confidence 00 0133567777762 1135567
Q ss_pred ccCCCccceEEEeCCCCHHHHHHHHHH
Q 011935 364 LLRPGRMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 364 LlrpGRfd~~I~~~~p~~~~~~~l~~~ 390 (474)
|+. ||+..|.|+.++.++...++..
T Consensus 260 l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 260 LIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred Hhc--CCCceeeccCCCHHHHHHHHhh
Confidence 777 9999999999999999888874
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=8.2e-16 Score=152.18 Aligned_cols=161 Identities=16% Similarity=0.264 Sum_probs=114.7
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHH
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDL 288 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l 288 (474)
+.++|.+.+++.+...+......-. ....+..++||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3578999999998887765432100 001123469999999999999999999998 556999999877543322
Q ss_pred HHHH---------------Hh---hcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC-----
Q 011935 289 RRIL---------------LS---TTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG----- 345 (474)
Q Consensus 289 ~~l~---------------~~---~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~----- 345 (474)
..++ .. ....+||||||+|.+.. ...+.|+..++.-....+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------------~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP----------------DVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH----------------HHHHHHHHHHHHSEEECTTSCEE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH----------------HHHHHHHHHHhcCEEEcCCCCEE
Confidence 2222 11 12458999999998732 345666666653221111
Q ss_pred --CceEEEEecCC--------------------------CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 346 --DERIIVFTTNH--------------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 346 --~~~iiI~tTN~--------------------------~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.+.++|+|||. ...++|+|++ ||+..+.+++|+.+++..|+..++..
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 25779999998 5578899998 99999999999999999999998754
No 47
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.63 E-value=1.9e-15 Score=149.59 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=116.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLEL 279 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~ 279 (474)
...|.+|++++|.+..++.+...+.. | ...++|||||||||||++++++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 56788999999999998887665431 1 12349999999999999999999987 446788888
Q ss_pred ccccChhHHHHHHHhh--------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEE
Q 011935 280 TSIYSNSDLRRILLST--------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIV 351 (474)
Q Consensus 280 ~~~~~~~~l~~l~~~~--------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI 351 (474)
++......++..+... .++.||+|||+|.+.. ...+.|+..++.. ....++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~L~~~le~~----~~~~~~i 136 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------------DAQAALRRTMEMY----SKSCRFI 136 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH----------------HHHHTTGGGTSSS----SSSEEEE
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH----------------HHHHHHHHHHHhc----CCCCeEE
Confidence 7654333333322221 3478999999998732 2345566666542 3457888
Q ss_pred EecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 352 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 352 ~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
++||.+..+++++.+ |+. .+.|+.|+.+++..++..++...
T Consensus 137 ~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp EEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred EEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHc
Confidence 999999999999999 886 89999999999999998877543
No 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.63 E-value=6.2e-16 Score=165.57 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=112.6
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh-----
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN----- 285 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~----- 285 (474)
.++++|.+++++.+.+.+....... ...+..+||+||||||||+++++||+.++.++..+++..+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~-------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK-------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS-------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc-------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 4568999999998876544221111 1135579999999999999999999999999999988775422
Q ss_pred ----------hHHHHHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC-----------
Q 011935 286 ----------SDLRRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS----------- 343 (474)
Q Consensus 286 ----------~~l~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~----------- 343 (474)
..+...|..+. ...||||||||.+.... .....+.||..+|.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~------------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDF------------RGDPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhh------------ccCHHHHHHHHHhhhhcceeecccCCeee
Confidence 22334455443 34599999999986411 111345677777643211
Q ss_pred CCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 344 CGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 344 ~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
.-.++++|+|||.++.+||+|++ ||+ .|+|+.|+.+++..+++.++
T Consensus 221 ~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 221 DLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp BCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 01457899999999999999999 996 68999999999999999987
No 49
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.5e-15 Score=147.97 Aligned_cols=205 Identities=11% Similarity=0.090 Sum_probs=134.3
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEEEeccccc
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYDLELTSIY 283 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~l~~~~~~ 283 (474)
|.+.++..+.|...+...+. ...+.+++||||||||||++++++++++ ++.++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 45556666666555554443 2356789999999999999999999998 4567888887654
Q ss_pred C----------------------hhHHHHHHHhh----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhh
Q 011935 284 S----------------------NSDLRRILLST----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFI 337 (474)
Q Consensus 284 ~----------------------~~~l~~l~~~~----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~i 337 (474)
+ ...+...|... ..+.||+|||||.+. .+..+..|++..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---------------~q~~L~~l~~~~ 157 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---------------SEKILQYFEKWI 157 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---------------CTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---------------cchHHHHHHhcc
Confidence 2 23456666653 346899999999984 134555666543
Q ss_pred cCcccCCCCceEEEEecCCCCC----CCccccCCCccc-eEEEeCCCCHHHHHHHHHHhhcccCCC-------CC-----
Q 011935 338 DGLWSSCGDERIIVFTTNHKER----IDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLGIKGKS-------HS----- 400 (474)
Q Consensus 338 dg~~~~~~~~~iiI~tTN~~~~----Ld~aLlrpGRfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~-------~~----- 400 (474)
.. ....++||+++|..+. |++++.+ ||. ..|.|++++.++...|+++.+...... +.
T Consensus 158 ~~----~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~ 231 (318)
T 3te6_A 158 SS----KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIY 231 (318)
T ss_dssp HC----SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEEC
T ss_pred cc----cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 21 2245889999998764 4566667 886 689999999999999999988653111 00
Q ss_pred --c----HHHHHh-hh-cCCCCCHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHh
Q 011935 401 --L----FGEIEG-LI-QSTDVTPAEVAEELM----KADDADVALEGLVNFLKRKRIQAD 448 (474)
Q Consensus 401 --l----~~~i~~-l~-~~~~~tpa~i~~~l~----~~~~~~~al~~l~~~l~~~~~~~~ 448 (474)
. .+.... +. ....++|.-|.-... .++|++.|++.+..+++.+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~ 291 (318)
T 3te6_A 232 NNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFV 291 (318)
T ss_dssp CCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 00 011256655432222 368999999999998888766544
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.62 E-value=2.2e-15 Score=152.77 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=116.5
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEE
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDL 277 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l 277 (474)
+...+++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +..++.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 333458899999999988776653321 1345789999999999999999999988 7888889
Q ss_pred ecccccCh----------------------hH-HHHHHHhh---cCCcEEEEecccccccccccCCCCCCCCCchhhHHh
Q 011935 278 ELTSIYSN----------------------SD-LRRILLST---TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLS 331 (474)
Q Consensus 278 ~~~~~~~~----------------------~~-l~~l~~~~---~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~ 331 (474)
++....+. .. +..++... ..+.||+|||+|.+... ......+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~-----------~~~~~~l~ 153 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR-----------PGGQDLLY 153 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS-----------TTHHHHHH
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc-----------CCCChHHH
Confidence 98764321 12 22222222 23679999999998531 01345566
Q ss_pred hHHhhhcCcccCCCCceEEEEecCCC---CCCCccccCCCccce-EEEeCCCCHHHHHHHHHHhhc
Q 011935 332 GILNFIDGLWSSCGDERIIVFTTNHK---ERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 332 ~LL~~idg~~~~~~~~~iiI~tTN~~---~~Ld~aLlrpGRfd~-~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.++..++.... +..+++|++||.+ +.+++++.+ ||.. .|+|++++.+++..++...+.
T Consensus 154 ~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 154 RITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp HHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred hHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 66766653310 2457889999987 788999998 9875 899999999999999998875
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=2.8e-15 Score=150.15 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHH
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLR 289 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~ 289 (474)
.+++++|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.......++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 467889999988877665431 26899999999999999999999999999998875332222221
Q ss_pred HHH---------HhhcC---CcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCc-------ccCCCCceEE
Q 011935 290 RIL---------LSTTN---RSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGL-------WSSCGDERII 350 (474)
Q Consensus 290 ~l~---------~~~~~---~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~-------~~~~~~~~ii 350 (474)
... ..... .+||||||||.+.. ...+.|+..++.. ....+...++
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~----------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA----------------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH----------------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccCCH----------------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 100 00012 37999999998732 2345555555421 1112234677
Q ss_pred EEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 351 VFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 351 I~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|+|+|..+ .++++|++ ||+.++.+++|+.+++.++++.....
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 78888543 38999999 99999999999999999999998764
No 52
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.60 E-value=2.4e-14 Score=144.99 Aligned_cols=156 Identities=17% Similarity=0.301 Sum_probs=117.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|.++.++.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 45788999999999999888776541 1 23457999999999999999999998854
Q ss_pred ------------cEEEEecccccChhHHHHHHHhhc------CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 ------------DIYDLELTSIYSNSDLRRILLSTT------NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ------------~~~~l~~~~~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
+++.++.........++.++.... .+.||+|||+|.+.. ...+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~Ll 140 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------------HSFNALL 140 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----------------HHHHHHH
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----------------HHHHHHH
Confidence 345555443223345666665543 357999999998732 3356677
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..++.. +..+++|++||.+..+++++.+ |+ ..++++.|+.++...++..++...
T Consensus 141 ~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 141 KTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp HHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 777642 3468888899999999999998 77 689999999999999998877543
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.1e-14 Score=144.17 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=118.4
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCc
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFD 273 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~ 273 (474)
.|.. ...|.+|++++|.+..++.+...+.. | ..+ ++||+||||||||++++++|+.+ +.+
T Consensus 10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 74 (323)
T 1sxj_B 10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CHHH--HTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred cHHH--hcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence 4543 46788999999999999888775531 1 223 39999999999999999999986 456
Q ss_pred EEEEecccccChhHHHHHHHhh--------c-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 274 IYDLELTSIYSNSDLRRILLST--------T-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 274 ~~~l~~~~~~~~~~l~~l~~~~--------~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
++.+++++..+...++.++... . .+.||+|||+|.+.. ...+.|+..++..
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------------~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------------GAQQALRRTMELY---- 134 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------------HHHHTTHHHHHHT----
T ss_pred EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------------HHHHHHHHHHhcc----
Confidence 7888877655555666555432 2 368999999998742 2244555555532
Q ss_pred CCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 345 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 345 ~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.....+|++||.+..+++++.+ |+. .+.|+.|+.++...++...+..
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 2457788889999999999998 875 8999999999999999887653
No 54
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=9.2e-15 Score=145.10 Aligned_cols=158 Identities=13% Similarity=0.194 Sum_probs=115.4
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----Cc
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FD 273 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~ 273 (474)
.|.. ...|.+|++++|.++.++.+...+.. |. ..++||+||||||||++++++|+.+. ..
T Consensus 14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 4643 46788999999999999888765542 11 23599999999999999999999863 34
Q ss_pred EEEEecccccChhHHHHHHHh----h----cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 274 IYDLELTSIYSNSDLRRILLS----T----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 274 ~~~l~~~~~~~~~~l~~l~~~----~----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
++.+++++......++..+.. . ..+.||+|||+|.+.. ...+.|+..++.. .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~L~~~le~~----~ 138 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------------DAQQALRRTMEMF----S 138 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------------HHHHHHHHHHHHT----T
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------------HHHHHHHHHHHhc----C
Confidence 777777654322233332221 1 3478999999998832 2345566666542 2
Q ss_pred CceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 346 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 346 ~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
....+|++||.+..+++++.+ |+. .+.|+.++.++...++...+..
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHh
Confidence 457788899999999999998 886 7899999999999988887654
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=7.5e-15 Score=147.61 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=115.2
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC------C
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR------F 272 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~------~ 272 (474)
.|.. ...|.+|++++|.+++++.+...+.. | ...++||+||||||||++++++|+.++ .
T Consensus 26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTLKS-----------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHH--HTCCSSTTTCCSCCTTHHHHHHHTTC-----------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHH--hcCCCCHHHhhCCHHHHHHHHHHHhc-----------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 4643 46788999999999999877665431 1 123599999999999999999999864 4
Q ss_pred cEEEEecccccChhHHHHHH---Hhh---------------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 273 DIYDLELTSIYSNSDLRRIL---LST---------------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 273 ~~~~l~~~~~~~~~~l~~l~---~~~---------------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
.+..+++++......++..+ ... ..+.||+|||+|.+.. ...+.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------~~~~~Ll 154 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------DAQSALR 154 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------------HHHHHHH
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------------HHHHHHH
Confidence 68888887754444443322 111 2346999999998842 2235566
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
..++... ....+|++||+++.+++++++ |+. .+.++.|+.++...++...+..
T Consensus 155 ~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 155 RTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp HHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred HHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 6665432 345677788999999999999 886 8899999999999888887643
No 56
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=1.3e-15 Score=138.24 Aligned_cols=146 Identities=19% Similarity=0.248 Sum_probs=101.0
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
..|..|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 3477899999999888877665431 235689999999999999999999987 77888
Q ss_pred EEecccccC--------hhHHHHHHHhh---cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCC
Q 011935 276 DLELTSIYS--------NSDLRRILLST---TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSC 344 (474)
Q Consensus 276 ~l~~~~~~~--------~~~l~~l~~~~---~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~ 344 (474)
.+++..+.. ...+..++... ..+.+|+|||+|.+........ ........|...++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-------~~~~~~~~l~~~~~~----- 150 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-------GALDAGNILKPMLAR----- 150 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-------TSCCTHHHHHHHHHT-----
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-------cchHHHHHHHHHHhc-----
Confidence 888765531 12344444333 3568999999999864211000 011222333333332
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCccceEEEeCCCC
Q 011935 345 GDERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCT 380 (474)
Q Consensus 345 ~~~~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~ 380 (474)
..+++|++||.++ .+|+++++ ||+. |+++.|+
T Consensus 151 -~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 -GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp -TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred -CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 3477888888765 68999999 9985 9999886
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=1.1e-14 Score=145.41 Aligned_cols=163 Identities=14% Similarity=0.214 Sum_probs=106.2
Q ss_pred cCCCCCCcccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 205 LEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 205 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
+.+..+|++++ |..... . ...+......+ ...+.+++||||||||||++++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~~~-a-~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRL-A-YEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTHH-H-HHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHHH-H-HHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44566899987 543322 1 12233333221 1235689999999999999999999998 8999999987
Q ss_pred cccCh-------hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEe
Q 011935 281 SIYSN-------SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 353 (474)
Q Consensus 281 ~~~~~-------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~t 353 (474)
++... ..+........++.+|||||||.+.. .... ...++..++..... +.++|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~-----------~~~~---~~~l~~~l~~~~~~--~~~iii~~ 138 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG-----------KERT---QIEFFHIFNTLYLL--EKQIILAS 138 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT-----------CHHH---HHHHHHHHHHHHHT--TCEEEEEE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC-----------ChHH---HHHHHHHHHHHHHC--CCeEEEEe
Confidence 76311 00111122234589999999998843 0012 22333333332222 33566666
Q ss_pred cCCCC---CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 354 TNHKE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 354 TN~~~---~Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
++.+. .++++|++ ||+ ..+++++ +.+++..++..++...
T Consensus 139 ~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~ 182 (324)
T 1l8q_A 139 DRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEF 182 (324)
T ss_dssp SSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHT
T ss_pred cCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhc
Confidence 66665 68999998 997 7899999 9999999999987543
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=2.7e-14 Score=150.28 Aligned_cols=147 Identities=19% Similarity=0.238 Sum_probs=107.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
..|..|+.|+|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4577899999999999988776542 235689999999999999999999997 78899
Q ss_pred EEeccccc---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEE
Q 011935 276 DLELTSIY---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERII 350 (474)
Q Consensus 276 ~l~~~~~~---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ii 350 (474)
.++++... ....++.+|.... .++||||| .. ....+.|+..++. ..+.+
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------------~~a~~~L~~~L~~------g~v~v 294 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------------IDASNILKPSLAR------GELQC 294 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------CCCTTS------SSCEE
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------------hhHHHHHHHhhcC------CCEEE
Confidence 88887322 1345677776554 57899999 10 0112334444432 45889
Q ss_pred EEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 351 VFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 351 I~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|++||.++ .+|++|.| ||.. |.|+.|+.+++..|++.++..
T Consensus 295 I~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 295 IGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred EecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 99999887 69999999 9984 999999999999999988765
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=1.8e-14 Score=146.46 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=112.5
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----------CCcEEEEecc
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------RFDIYDLELT 280 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----------~~~~~~l~~~ 280 (474)
++++|.++..+.+.+.+...... ..+++++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998877765432 235689999999999999999999988 8899999877
Q ss_pred ccc-Ch-----------------------hH-HHHHHHhhcC-CcEEEEecccccccccccCCCCCCCCCchhhH-HhhH
Q 011935 281 SIY-SN-----------------------SD-LRRILLSTTN-RSILVIEDVDCSVEMKDRQNDGASVGSNTKLT-LSGI 333 (474)
Q Consensus 281 ~~~-~~-----------------------~~-l~~l~~~~~~-~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~-l~~L 333 (474)
... +. .. +..++..... +.||+|||+|.+... ..... +..|
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~------------~~~~~~l~~l 158 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR------------RGGDIVLYQL 158 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS------------TTSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC------------CCCceeHHHH
Confidence 643 21 11 2222222222 339999999998531 01223 4444
Q ss_pred HhhhcCcccCCCCceEEEEecCCC---CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 334 LNFIDGLWSSCGDERIIVFTTNHK---ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 334 L~~idg~~~~~~~~~iiI~tTN~~---~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
+... .++.+|+|||.+ +.+++++.+ ||...|+|++++.++..+++..++.
T Consensus 159 ~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 159 LRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred hcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 4433 347888999987 788999988 8877999999999999999998875
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.58 E-value=7.8e-14 Score=140.30 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=127.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYS 284 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~ 284 (474)
.-.|.+|+.++|.+.+++.+...+..... .| .++..++|+||||||||+|++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 45677999999998877776555442211 12 23467999999999999999999999999887776665555
Q ss_pred hhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc------cCC--------CCceEE
Q 011935 285 NSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW------SSC--------GDERII 350 (474)
Q Consensus 285 ~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~------~~~--------~~~~ii 350 (474)
..++..++.....+.|++|||++.+.. ... ..|+..+.... ... -..+.+
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~-------------~~~---e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK-------------AVE---ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH-------------HHH---HHHHHHHHTSCCCC---------------CCCEE
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH-------------HHH---HHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 666776666556778999999998842 011 12222222110 000 013567
Q ss_pred EEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcccCCCCCcHHHHHhhhcCCCCCHHHH
Q 011935 351 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEV 419 (474)
Q Consensus 351 I~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~~~~tpa~i 419 (474)
+++|+.+..|++++++ ||...+.+++++.+++.++++......+.. ...+.+..++....-+|..+
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHH
Confidence 7799999999999999 999899999999999999999876543211 12233444444444455443
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.58 E-value=4.1e-15 Score=140.68 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=103.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEeccc
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTS 281 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~ 281 (474)
+.++.+|+++++.+. .+.+.+.+..+... +.+++++|+||||||||++++++|+.+. ..++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 455578999998322 22333444433321 2457899999999999999999999874 7788888877
Q ss_pred ccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC-CCC--
Q 011935 282 IYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKE-- 358 (474)
Q Consensus 282 ~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN-~~~-- 358 (474)
+... +...+.....+.+|+|||+|.+.. .. .....|+..++..... ....+|+||| .+.
T Consensus 91 ~~~~--~~~~~~~~~~~~vliiDe~~~~~~-------------~~-~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 91 HASI--STALLEGLEQFDLICIDDVDAVAG-------------HP-LWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEA 152 (242)
T ss_dssp GGGS--CGGGGTTGGGSSEEEEETGGGGTT-------------CH-HHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTT
T ss_pred HHHH--HHHHHHhccCCCEEEEeccccccC-------------CH-HHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHH
Confidence 6421 222233345689999999998742 11 1123344443332221 1232444444 443
Q ss_pred -CCCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhcc
Q 011935 359 -RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 359 -~Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.+++++.+ ||. ..++++.|+.+++.+++..++..
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 45688888 886 89999999999999999988753
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=2.2e-14 Score=159.59 Aligned_cols=156 Identities=14% Similarity=0.227 Sum_probs=113.5
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CC-ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS 284 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~-rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~ 284 (474)
+.++|++..++.+...+..... |.. .| .++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4688999999988887765431 222 12 269999999999999999999998 67899999998863
Q ss_pred h-----hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC-------CCCceEEEE
Q 011935 285 N-----SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS-------CGDERIIVF 352 (474)
Q Consensus 285 ~-----~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~-------~~~~~iiI~ 352 (474)
. ..+...+. ...++||||||||.+. ....+.|+..++.-.-. ...+.+||+
T Consensus 563 ~~~~~~~~l~~~~~-~~~~~vl~lDEi~~~~----------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 563 KHSTSGGQLTEKVR-RKPYSVVLLDAIEKAH----------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp SCCCC---CHHHHH-HCSSSEEEEECGGGSC----------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ccccccchhhHHHH-hCCCeEEEEeCccccC----------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 2 22333332 2457899999999773 24566677777642110 113468999
Q ss_pred ecCCCCC------------CCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 353 TTNHKER------------IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 353 tTN~~~~------------Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|||.+.. ++|+|+. ||+..|.|++|+.+++..|+..++..
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 9997544 7888888 99999999999999999999998753
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=2e-14 Score=161.93 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=106.3
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEEE
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIYD 276 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~~ 276 (474)
.|..|+.++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 47789999999988888777553 1235689999999999999999999998 889999
Q ss_pred EecccccC--------hhHHHHHHHhhc---CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 277 LELTSIYS--------NSDLRRILLSTT---NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 277 l~~~~~~~--------~~~l~~l~~~~~---~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
++++.+.. ...+..++..+. .++||||||+|.+.+..+..+ .....+.|...++.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g--------~~~~~~~L~~~l~~------ 297 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG--------AVDAGNMLKPALAR------ 297 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------HHHHHT------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc--------hHHHHHHHHHHHhC------
Confidence 99887742 234666766553 578999999999975321110 11122223333332
Q ss_pred CceEEEEecCCCC----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 346 DERIIVFTTNHKE----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 346 ~~~iiI~tTN~~~----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
..+.+|++||.++ .+|++|.| ||+. |.++.|+.+++..+++.++.
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 3467888888764 47999999 9986 99999999999999987664
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=2.4e-14 Score=143.88 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=101.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC-------c----
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF-------D---- 273 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~-------~---- 273 (474)
..+|.+|++++|.+..++.+..... . +...++||+||||||||++|+++|+.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~----~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAV----D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHH----C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHhh----C---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 3466789999999987765422111 1 12357999999999999999999999863 1
Q ss_pred ----------------------EEEEecccccChhHH------HHHHHhh-----------cCCcEEEEecccccccccc
Q 011935 274 ----------------------IYDLELTSIYSNSDL------RRILLST-----------TNRSILVIEDVDCSVEMKD 314 (474)
Q Consensus 274 ----------------------~~~l~~~~~~~~~~l------~~l~~~~-----------~~~sIl~iDeiD~l~~~~~ 314 (474)
++.+... .+...+ ...+... ..++||||||||.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--- 158 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--- 158 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---
T ss_pred ccccccchhhhhccccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---
Confidence 1211111 011111 2222221 2378999999998842
Q ss_pred cCCCCCCCCCchhhHHhhHHhhhcC----cccCC-----CCceEEEEecCCCC-CCCccccCCCccceEEEeCCC-CHHH
Q 011935 315 RQNDGASVGSNTKLTLSGILNFIDG----LWSSC-----GDERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYC-TVHG 383 (474)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~LL~~idg----~~~~~-----~~~~iiI~tTN~~~-~Ld~aLlrpGRfd~~I~~~~p-~~~~ 383 (474)
.....|+..++. +.... ...+++|+|||..+ .++++|++ ||+.++++++| +.+.
T Consensus 159 -------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~ 223 (350)
T 1g8p_A 159 -------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVET 223 (350)
T ss_dssp -------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHH
T ss_pred -------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHH
Confidence 234455555542 11110 12578889999744 89999999 99999999999 6777
Q ss_pred HHHHHHHhhc
Q 011935 384 FKVLASNYLG 393 (474)
Q Consensus 384 ~~~l~~~~l~ 393 (474)
+..|+...+.
T Consensus 224 ~~~il~~~~~ 233 (350)
T 1g8p_A 224 RVEVIRRRDT 233 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7788877543
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.55 E-value=2.6e-14 Score=158.88 Aligned_cols=155 Identities=14% Similarity=0.269 Sum_probs=114.7
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccCh--
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSN-- 285 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~-- 285 (474)
+.++|+++.++.+...+... +.|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 35788888888887765432 23332 22369999999999999999999999999999999887421
Q ss_pred -----------------hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--cCCC-
Q 011935 286 -----------------SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--SSCG- 345 (474)
Q Consensus 286 -----------------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~~~~- 345 (474)
..+...+.. ..++||||||||.+. ...++.|+..+|.-. ...|
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~----------------~~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH----------------PDVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC----------------HHHHHHHHHHHHHSEEEETTTE
T ss_pred HhhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC----------------HHHHHHHHHHhcCcEEEcCCCC
Confidence 122333322 457999999999873 235677777776321 1111
Q ss_pred ----CceEEEEecCCCC-------------------------CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 346 ----DERIIVFTTNHKE-------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 346 ----~~~iiI~tTN~~~-------------------------~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.+.+||+|||... .++|+|+. ||+..|.|++++.+++..|+..++.
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 3478999999753 67889998 9999999999999999999999875
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=4e-14 Score=143.30 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=114.6
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh------CCcEEEEec
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------RFDIYDLEL 279 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l------~~~~~~l~~ 279 (474)
.+...+++++|.++..+.+.+.+...+. ...+++++|+||||||||++++++++.+ +..++.+++
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 3344568899999999888776553322 1335689999999999999999999988 888888886
Q ss_pred ccccC----------------------hhHHH-HH---HHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhH
Q 011935 280 TSIYS----------------------NSDLR-RI---LLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGI 333 (474)
Q Consensus 280 ~~~~~----------------------~~~l~-~l---~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~L 333 (474)
....+ ...+. .+ +.....+.||+|||+|.+.... ....+..|
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~------------~~~~l~~l 152 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY------------NDDILYKL 152 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS------------CSTHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC------------cCHHHHHH
Confidence 54321 12212 22 2222348899999999886411 12346677
Q ss_pred HhhhcCcccCCCCceEEEEecCCC---CCCCccccCCCccc-eEEEeCCCCHHHHHHHHHHhhc
Q 011935 334 LNFIDGLWSSCGDERIIVFTTNHK---ERIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 334 L~~idg~~~~~~~~~iiI~tTN~~---~~Ld~aLlrpGRfd-~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
+..++.. ...++.+|++||.+ +.+++++.+ ||. ..|+++.++.++..+++...+.
T Consensus 153 ~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 153 SRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 7776543 22457888888877 567888887 775 4899999999999999998764
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=1.3e-13 Score=153.37 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=113.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
..|..|+.++|.++..+.+.+.+. ...+.++||+||||||||++++++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 356789999999998888766543 2246789999999999999999999987 66788
Q ss_pred EEecccccC--------hhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 276 DLELTSIYS--------NSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 276 ~l~~~~~~~--------~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
.+++..+.. ...++.++.... .++||||||+|.+.+.... ........+.|...++ .
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-------~~~~~~~~~~L~~~l~----~-- 313 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-------SGGQVDAANLIKPLLS----S-- 313 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-------SSCHHHHHHHHSSCSS----S--
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-------CcchHHHHHHHHHHHh----C--
Confidence 887766542 356777777665 4799999999999752211 0111222222323322 2
Q ss_pred CceEEEEecCCC-----CCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 346 DERIIVFTTNHK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 346 ~~~iiI~tTN~~-----~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.++.+|++||.+ -.+|++|.| ||+ .|.|+.|+.+++.++++.+..
T Consensus 314 ~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 457788888864 357899999 998 699999999999999987664
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=3.3e-14 Score=148.41 Aligned_cols=160 Identities=18% Similarity=0.298 Sum_probs=105.0
Q ss_pred cCCCCCCcccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011935 205 LEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLE 278 (474)
Q Consensus 205 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~ 278 (474)
+.+..+|++++ |..... ....+......+ |. +.+++||||||||||+|++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44556899987 654433 223333333222 21 5789999999999999999999998 88889888
Q ss_pred cccccChhHHH---------HHHHhhc-CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCce
Q 011935 279 LTSIYSNSDLR---------RILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDER 348 (474)
Q Consensus 279 ~~~~~~~~~l~---------~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ 348 (474)
+..+. ..+. ....... ++.||||||+|.+... ... ...|+..++.+... +..
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----------~~~---q~~l~~~l~~l~~~--~~~ 229 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----------TGV---QTELFHTFNELHDS--GKQ 229 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----------HHH---HHHHHHHHHHHHTT--TCE
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----------hHH---HHHHHHHHHHHHHC--CCe
Confidence 87653 1111 1122234 6899999999988531 012 23344443332222 234
Q ss_pred EEEEecCCCCC---CCccccCCCccc--eEEEeCCCCHHHHHHHHHHhhcc
Q 011935 349 IIVFTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 349 iiI~tTN~~~~---Ld~aLlrpGRfd--~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
+||.|.+.+.. ++++|++ ||. ..+.++.|+.+++..++...+..
T Consensus 230 iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 230 IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp EEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 55555554554 8899999 886 78999999999999999988753
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=2e-13 Score=138.68 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=114.5
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEecccccCh
Q 011935 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELTSIYSN 285 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~~~~~~ 285 (474)
.+++++|.++..+.+...+....... .+..++++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 34789999999999988877654321 1112379999999999999999999998 677888887665422
Q ss_pred hH--------------------------HHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC
Q 011935 286 SD--------------------------LRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG 339 (474)
Q Consensus 286 ~~--------------------------l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg 339 (474)
.. +...+.....+.||+|||+|.+. ...+..|+..++.
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------------PDILSTFIRLGQE 151 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------------HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------------hHHHHHHHHHHHh
Confidence 11 11112222457899999999871 2345566666654
Q ss_pred cccCCCCceEEEEecCCC---CCCCccccCCCccce-EEEeCCCCHHHHHHHHHHhhcc
Q 011935 340 LWSSCGDERIIVFTTNHK---ERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 340 ~~~~~~~~~iiI~tTN~~---~~Ld~aLlrpGRfd~-~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
.......++.+|++||.+ +.+++.+.+ ||.. .|+|++++.++...++...+..
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 321001357888899887 778888888 8875 8999999999999999888753
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=1.5e-13 Score=152.74 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=108.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----------CCcEE
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------RFDIY 275 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----------~~~~~ 275 (474)
..|..|+.++|.++.++.+.+.+. ...+.++||+||||||||++|+++|+.+ +..++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 456789999999999998877654 2345789999999999999999999997 78888
Q ss_pred EEeccccc---ChhHHHHHHHhhc--CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEE
Q 011935 276 DLELTSIY---SNSDLRRILLSTT--NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERII 350 (474)
Q Consensus 276 ~l~~~~~~---~~~~l~~l~~~~~--~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~ii 350 (474)
.+++.... .+..++.+|..+. .++||||| .. ....+.|+..++. ..+.+
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------------~~~~~~L~~~l~~------~~v~~ 294 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------------IDASNILKPSLAR------GELQC 294 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------CCCTTS------SSCEE
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------------hhHHHHHHHHHhc------CCEEE
Confidence 88872221 2346777776654 58999999 10 0112334444432 45889
Q ss_pred EEecCCCC-----CCCccccCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 351 VFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 351 I~tTN~~~-----~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
|++||..+ .+||+++| ||. .|.|+.|+.+++..|++.+...
T Consensus 295 I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 295 IGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred EeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 99999888 79999999 995 5999999999999999987654
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.51 E-value=6.2e-14 Score=135.93 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=100.4
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEecccccCh
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIYSN 285 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~~~ 285 (474)
.+|++++|.+...+.+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++|+.+. .
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-E 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-H
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-h
Confidence 4789999999999998887775532 347899999999999999999999875 689999999874 2
Q ss_pred hHHHH-HHH-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-cC---
Q 011935 286 SDLRR-ILL-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-SS--- 343 (474)
Q Consensus 286 ~~l~~-l~~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~~--- 343 (474)
..+.. +|. ....+++|||||||.+.. .....|+..++.-. ..
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~----------------~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM----------------MVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH----------------HHHHHHHHHHHHCEECCCCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH----------------HHHHHHHHHHHhCCeecCCC
Confidence 22221 111 113468999999998832 22344555554210 00
Q ss_pred ---CCCceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHhhc
Q 011935 344 ---CGDERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCTV--HGFKVLASNYLG 393 (474)
Q Consensus 344 ---~~~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 393 (474)
...++.+|+|||.+ ..++++|.+ ||. ..|.+|.... ++...++.+++.
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 01246788888874 357888988 986 4667776654 556667776664
No 72
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.5e-13 Score=138.46 Aligned_cols=156 Identities=14% Similarity=0.207 Sum_probs=107.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC------------
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF------------ 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~------------ 272 (474)
...|.+|++++|++++++.+...+. . .| ..+. ++|+||||||||++++++|+.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 5688999999999988887755431 1 11 2233 999999999999999999996411
Q ss_pred -----------------cEEEEecccccChh--HHHHHHHhh----------------cCCcEEEEecccccccccccCC
Q 011935 273 -----------------DIYDLELTSIYSNS--DLRRILLST----------------TNRSILVIEDVDCSVEMKDRQN 317 (474)
Q Consensus 273 -----------------~~~~l~~~~~~~~~--~l~~l~~~~----------------~~~sIl~iDeiD~l~~~~~~~~ 317 (474)
+++.++........ .++..+... .++.||+|||++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 12333332221111 344444332 245699999999852
Q ss_pred CCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhccc
Q 011935 318 DGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 318 ~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
....+.|+..++.. ..+..+|++||.++.+.+++.+ |+ ..+.|+.|+.+++..++.......
T Consensus 148 ---------~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp ---------HHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 12344556665543 1347888999999999999998 88 789999999999999998876543
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=6.4e-13 Score=133.67 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=113.3
Q ss_pred CCcccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC-----Cc
Q 011935 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR-----FD 273 (474)
Q Consensus 199 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~-----~~ 273 (474)
.|.. ...|.+|++++|++.+++.+...+.. |. .+ +++|+||||||||++++++|+.+. ..
T Consensus 14 ~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 14 PWVE--KYRPETLDEVYGQNEVITTVRKFVDE-----------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred chHH--HhCCCcHHHhcCcHHHHHHHHHHHhc-----------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 5643 46889999999998888877655441 21 22 399999999999999999999873 34
Q ss_pred EEEEecccccChhHHHHHHHhh--------cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC
Q 011935 274 IYDLELTSIYSNSDLRRILLST--------TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 345 (474)
Q Consensus 274 ~~~l~~~~~~~~~~l~~l~~~~--------~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~ 345 (474)
+..++.++......++..+... ..+.|++|||+|.+.. ...+.|+..++.. .
T Consensus 79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------------~~~~~L~~~le~~----~ 138 (340)
T 1sxj_C 79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------------AAQNALRRVIERY----T 138 (340)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------------HHHHHHHHHHHHT----T
T ss_pred EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------------HHHHHHHHHHhcC----C
Confidence 6777776644444555443321 1368999999998732 2245566666543 2
Q ss_pred CceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 346 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 346 ~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
....+|++||.+..+.|++++ |+. .+.|+.++.++....+...+.
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 346778889999999999999 886 789999999988888877663
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=6.1e-14 Score=123.88 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=90.3
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLR 289 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~ 289 (474)
.++|.+...+.+.+.+.... ....++||+||||||||++|+++++.. +.+++ ++|+.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 57888888888888777553 234689999999999999999999987 67888 9999887665566
Q ss_pred HHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC-------CCCCc
Q 011935 290 RILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK-------ERIDP 362 (474)
Q Consensus 290 ~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~-------~~Ld~ 362 (474)
..+..+ .+++|||||||.+.. .....|+..+... ...+.+|+|||.+ ..+.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~----------------~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~~~ 128 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR----------------EQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHIIA 128 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH----------------HHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCCCH
T ss_pred cHHHHc-CCcEEEEcChHHCCH----------------HHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCCCH
Confidence 666554 568999999998832 2234556555332 1335677888864 23444
Q ss_pred cccCCCccc-eEEEeCC
Q 011935 363 ALLRPGRMD-VHINMSY 378 (474)
Q Consensus 363 aLlrpGRfd-~~I~~~~ 378 (474)
.|.. |+. ..|++|+
T Consensus 129 ~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 129 ELYY--CFAMTQIACLP 143 (145)
T ss_dssp HHHH--HHHHHEEECCC
T ss_pred HHHH--HhcCCEEeCCC
Confidence 5544 433 2566664
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=3.9e-12 Score=127.88 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=97.0
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC------------------------CcEEEEecc---cccChhHHHHHHHhhc-
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR------------------------FDIYDLELT---SIYSNSDLRRILLSTT- 296 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~------------------------~~~~~l~~~---~~~~~~~l~~l~~~~~- 296 (474)
.+.++|||||||||||++|+++|+.+. .+++.++.. .-...+.++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 456799999999999999999999874 245666553 2224456777766543
Q ss_pred -----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccc
Q 011935 297 -----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 371 (474)
Q Consensus 297 -----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd 371 (474)
.+.|++|||+|.+.. ...+.||..++. ++.+.++|++||.++.++|++++ |+.
T Consensus 103 ~~~~~~~kvviIdead~l~~----------------~a~naLLk~lEe----p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD----------------AAANALLKTLEE----PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH----------------HHHHHHHHHHTS----CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred ccccCCcEEEEECchhhcCH----------------HHHHHHHHHhcC----CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 357999999998832 335678888875 23568888999999999999999 884
Q ss_pred eEEEeCCCCHHHHHHHHHHhh
Q 011935 372 VHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 372 ~~I~~~~p~~~~~~~l~~~~l 392 (474)
.++|+.|+.++...++....
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC
T ss_pred -eeeCCCCCHHHHHHHHHHhc
Confidence 79999999999988888775
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=7.1e-13 Score=149.24 Aligned_cols=157 Identities=18% Similarity=0.312 Sum_probs=113.8
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc
Q 011935 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY 283 (474)
Q Consensus 211 f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~ 283 (474)
++.|+|.++.++.+...+.... .|.. +..++||+||||||||++|+++|+.+ +.+++.++|+.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 3568899999888887776442 1211 22479999999999999999999998 7899999998775
Q ss_pred Chh-------------------HHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc--c
Q 011935 284 SNS-------------------DLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW--S 342 (474)
Q Consensus 284 ~~~-------------------~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~--~ 342 (474)
... .+...+. ....+||||||||.+. ...++.|+..++.-. .
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~-~~~~~vl~lDEi~~l~----------------~~~~~~Ll~~l~~~~~~~ 691 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVR-RRPYSVILFDEIEKAH----------------PDVFNILLQILDDGRLTD 691 (854)
T ss_dssp SSGGGGGC--------------CHHHHHH-HCSSEEEEESSGGGSC----------------HHHHHHHHHHHTTTEECC
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHH-hCCCeEEEEecccccC----------------HHHHHHHHHHhccCceEC
Confidence 321 1111121 1346899999999773 245677777776421 1
Q ss_pred CCC-----CceEEEEecCC--------------------------CCCCCccccCCCccceEEEeCCCCHHHHHHHHHHh
Q 011935 343 SCG-----DERIIVFTTNH--------------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 391 (474)
Q Consensus 343 ~~~-----~~~iiI~tTN~--------------------------~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~ 391 (474)
..+ .+.+||+|||. ...+.|+|+. ||+..+.+++|+.+++..|+..+
T Consensus 692 ~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~ 769 (854)
T 1qvr_A 692 SHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 769 (854)
T ss_dssp SSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHH
T ss_pred CCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHH
Confidence 111 35789999997 2356777877 99999999999999999999988
Q ss_pred hcc
Q 011935 392 LGI 394 (474)
Q Consensus 392 l~~ 394 (474)
+..
T Consensus 770 l~~ 772 (854)
T 1qvr_A 770 LSY 772 (854)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 77
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.39 E-value=1.2e-13 Score=121.76 Aligned_cols=131 Identities=8% Similarity=0.006 Sum_probs=86.3
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRIL 292 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~ 292 (474)
+++|.++..+.+.+.+..+.. .+.++||+||||||||++|+++++..+ +++.++++.+.. ......+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHH
Confidence 478888999999888876542 346899999999999999999999888 899999887642 2234444
Q ss_pred HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC-CCC----CccccCC
Q 011935 293 LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK-ERI----DPALLRP 367 (474)
Q Consensus 293 ~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~-~~L----d~aLlrp 367 (474)
.. ..+++|||||||.+.. .....|+..++... ..++.+|+|||.+ +.+ ++.|..
T Consensus 72 ~~-a~~~~l~lDei~~l~~----------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~~- 130 (143)
T 3co5_A 72 QK-AEGGVLYVGDIAQYSR----------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLAG- 130 (143)
T ss_dssp HH-TTTSEEEEEECTTCCH----------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHHH-
T ss_pred Hh-CCCCeEEEeChHHCCH----------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHHH-
Confidence 44 4578999999998832 12334455554321 2346677888754 332 233333
Q ss_pred Ccc-ceEEEeCC
Q 011935 368 GRM-DVHINMSY 378 (474)
Q Consensus 368 GRf-d~~I~~~~ 378 (474)
|+ ...|++|+
T Consensus 131 -rl~~~~i~lPp 141 (143)
T 3co5_A 131 -LFSESVVRIPP 141 (143)
T ss_dssp -HSSSEEEEECC
T ss_pred -HhcCcEEeCCC
Confidence 43 34667765
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.37 E-value=1.7e-12 Score=128.90 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=101.8
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHH
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDL 288 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l 288 (474)
++++|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.. +.+++.++|+.+.. ..+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~ 69 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLL 69 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHH
Confidence 357899999998888777553 235689999999999999999999976 57899999988742 111
Q ss_pred H-HHHH-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-c------C
Q 011935 289 R-RILL-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-S------S 343 (474)
Q Consensus 289 ~-~l~~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~------~ 343 (474)
. .+|. ....+++|||||||.+.. .....|+..++... . .
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~----------------~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP----------------LMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH----------------HHHHHHHHHHHSSBCCBTTBCCC
T ss_pred HHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH----------------HHHHHHHHHHhcCEeeecCCccc
Confidence 1 1111 112458999999998832 23345555555321 0 0
Q ss_pred CCCceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCC--HHHHHHHHHHhhc
Q 011935 344 CGDERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCT--VHGFKVLASNYLG 393 (474)
Q Consensus 344 ~~~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~--~~~~~~l~~~~l~ 393 (474)
...++.||+|||.. ..++++|.. ||. ..|++|+.. .++...++.+|+.
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 11246788888875 346677777 774 456777666 4566677777764
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4.5e-12 Score=125.92 Aligned_cols=122 Identities=14% Similarity=0.208 Sum_probs=96.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh------CCcEEEEeccc-ccChhHHHHHHHhhc------CCcEEEEecccccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL------RFDIYDLELTS-IYSNSDLRRILLSTT------NRSILVIEDVDCSVEM 312 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l------~~~~~~l~~~~-~~~~~~l~~l~~~~~------~~sIl~iDeiD~l~~~ 312 (474)
...||||||||||||++++++|+.+ ..+++.++..+ -.+-+.++.++..+. ...|++|||+|.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 3589999999999999999999874 45788888764 335566777776653 246999999998832
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
...+.||..|+. ++...++|++||.+.++.|++++ | .++|+.|+.++....+...+
T Consensus 97 ---------------~a~naLLk~LEe----p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 97 ---------------QAANAFLKALEE----PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ---------------HHHHHTHHHHHS----CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHhC----CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 335778888875 23567888888999999999999 8 78999999999888887775
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.31 E-value=4.4e-12 Score=133.97 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=93.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC--cEEEEecccccChhHH--
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTSIYSNSDL-- 288 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~~~~~~~l-- 288 (474)
.++|.+++++.+...+. .+.++||+||||||||++|+++|+.++. ++..+.+.. .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46788888776654332 1358999999999999999999998854 444444432 111111
Q ss_pred ---------HHHHHhhc-----CCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC-------cccCCCCc
Q 011935 289 ---------RRILLSTT-----NRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-------LWSSCGDE 347 (474)
Q Consensus 289 ---------~~l~~~~~-----~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-------~~~~~~~~ 347 (474)
...+.... .++|||||||+.+. ..+.+.|+..|+. ..... ..
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~----------------~~~q~~LL~~lee~~v~i~G~~~~~-~~ 149 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG----------------PAILNTLLTAINERQFRNGAHVEKI-PM 149 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC----------------HHHHHHHHHHHHSSEEECSSSEEEC-CC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc----------------HHHHHHHHHHHHHHhccCCCCcCCc-ch
Confidence 11122111 35699999998662 2445667777742 11111 23
Q ss_pred eEEEEecCCCC---CCCccccCCCccceEEEeCCCCH-HHHHHHHHHhhc
Q 011935 348 RIIVFTTNHKE---RIDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG 393 (474)
Q Consensus 348 ~iiI~tTN~~~---~Ld~aLlrpGRfd~~I~~~~p~~-~~~~~l~~~~l~ 393 (474)
+++|+|||.+. .+.+++++ ||...|.+|+|+. +++..|+.....
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 46678888532 23459999 9999999999997 678888887653
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=3.8e-12 Score=116.01 Aligned_cols=128 Identities=18% Similarity=0.247 Sum_probs=81.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEecccc
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELTSI 282 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~~~ 282 (474)
.+.+|+++++.+...+.+.+.+..+.. .+..+.+.+++|+||||||||+|++++|+.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456899988765555555565655543 2334456789999999999999999999987 566666665554
Q ss_pred cCh-------hHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecC
Q 011935 283 YSN-------SDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN 355 (474)
Q Consensus 283 ~~~-------~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN 355 (474)
... ......+....++.+|+|||++.... +......+..+++.... .+..+|+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~-----------~~~~~~~l~~ll~~~~~------~~~~ii~tsn 141 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL-----------SDWQRELISYIITYRYN------NLKSTIITTN 141 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC-----------CHHHHHHHHHHHHHHHH------TTCEEEEECC
T ss_pred HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC-----------CHHHHHHHHHHHHHHHH------cCCCEEEEcC
Confidence 210 00112333445789999999985421 22233445555544321 2356778888
Q ss_pred CC
Q 011935 356 HK 357 (474)
Q Consensus 356 ~~ 357 (474)
.+
T Consensus 142 ~~ 143 (180)
T 3ec2_A 142 YS 143 (180)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3.9e-13 Score=145.28 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=87.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe----cccccC---hhHH------H-HHHHhhcCCcEEEEeccccccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE----LTSIYS---NSDL------R-RILLSTTNRSILVIEDVDCSVEMK 313 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~----~~~~~~---~~~l------~-~l~~~~~~~sIl~iDeiD~l~~~~ 313 (474)
++||+||||||||++|+++|+.++..++... +..+.. .... . ..+. ...++|+||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-LADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-HHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-ecCCCcEEeehhhhCCH--
Confidence 7999999999999999999999887665432 122110 0000 0 0111 12468999999998732
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhhcCc---------ccCCCCceEEEEecCCCC-------------CCCccccCCCccc
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFIDGL---------WSSCGDERIIVFTTNHKE-------------RIDPALLRPGRMD 371 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~idg~---------~~~~~~~~iiI~tTN~~~-------------~Ld~aLlrpGRfd 371 (474)
...+.|+..|+.- .........||+|||.+. .|+++|++ |||
T Consensus 406 --------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFD 469 (595)
T 3f9v_A 406 --------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFD 469 (595)
T ss_dssp --------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCS
T ss_pred --------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCe
Confidence 2345566666531 111123467999999886 89999999 998
Q ss_pred -eEEEeCCCCHHHHHHHHHHhhccc
Q 011935 372 -VHINMSYCTVHGFKVLASNYLGIK 395 (474)
Q Consensus 372 -~~I~~~~p~~~~~~~l~~~~l~~~ 395 (474)
..+..++|+.+ ...|+++.+...
T Consensus 470 l~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 470 LIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 46666888888 888888887654
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=5.1e-11 Score=145.65 Aligned_cols=138 Identities=20% Similarity=0.371 Sum_probs=99.3
Q ss_pred CccceecCCCCCcHHHHH-HHHHHHhCCcEEEEecccccChhHHHHHHHhh-----------------cCCcEEEEeccc
Q 011935 246 KRGYLLYGPPGTGKSSLI-AAMANYLRFDIYDLELTSIYSNSDLRRILLST-----------------TNRSILVIEDVD 307 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la-~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~-----------------~~~sIl~iDeiD 307 (474)
++++||+||||||||++| +++++..++.++.++++...+...+.+.+... .+++|||||||+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 479999999999999999 55666567889999999887777777776542 124699999998
Q ss_pred ccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCC------CceEEEEecCCCC-----CCCccccCCCccceEEEe
Q 011935 308 CSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG------DERIIVFTTNHKE-----RIDPALLRPGRMDVHINM 376 (474)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~------~~~iiI~tTN~~~-----~Ld~aLlrpGRfd~~I~~ 376 (474)
.... ++-+ .......+.+++. ..|++.... .++.+|+|||+++ .|+|+++| || ..|.+
T Consensus 1347 mp~~--d~yg-----~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i 1415 (2695)
T 4akg_A 1347 LPKL--DKYG-----SQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYL 1415 (2695)
T ss_dssp CSCC--CSSS-----CCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEEC
T ss_pred cccc--cccC-----chhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEe
Confidence 6421 1111 1122334444442 234443221 2478999999995 89999999 99 77999
Q ss_pred CCCCHHHHHHHHHHhhcc
Q 011935 377 SYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 377 ~~p~~~~~~~l~~~~l~~ 394 (474)
+.|+.+++..|+..++..
T Consensus 1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=9.2e-11 Score=120.00 Aligned_cols=164 Identities=9% Similarity=0.090 Sum_probs=106.9
Q ss_pred CCcccccChhHHHHHHHHH-HHHHhhHHHHHHhCCCCCcccee--cCCCCCcHHHHHHHHHHHh---------CCcEEEE
Q 011935 210 TFDTLAMDPELKQMILDDL-DRFLRRKEFYRRVGKAWKRGYLL--YGPPGTGKSSLIAAMANYL---------RFDIYDL 277 (474)
Q Consensus 210 ~f~~l~g~~~~k~~i~~~l-~~~l~~~~~~~~~g~~~~rgiLL--~GppGtGKT~la~alA~~l---------~~~~~~l 277 (474)
..+.++|.++..+.+.+.+ ....... ...++.++| +||||||||++++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 4478999999999888877 5443210 013467899 9999999999999999876 4567777
Q ss_pred ecccccCh----------------------hH----HHHHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHh
Q 011935 278 ELTSIYSN----------------------SD----LRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLS 331 (474)
Q Consensus 278 ~~~~~~~~----------------------~~----l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~ 331 (474)
++....+. .. +...+.....+.||+|||+|.+.... ......+.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~----------~~~~~~l~ 162 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP----------RIAAEDLY 162 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT----------TSCHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc----------CcchHHHH
Confidence 76432211 11 11222222457899999999884310 01234455
Q ss_pred hHHhhhcCcccCCC--CceEEEEecCCCC---CCC---ccccCCCccceEEEeCCCCHHHHHHHHHHhhc
Q 011935 332 GILNFIDGLWSSCG--DERIIVFTTNHKE---RID---PALLRPGRMDVHINMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 332 ~LL~~idg~~~~~~--~~~iiI~tTN~~~---~Ld---~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l~ 393 (474)
.|+..++... ..+ ..+.+|+|||.++ .++ +.+.+ |+...|.++.++.++..+++...+.
T Consensus 163 ~l~~~~~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 163 TLLRVHEEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHTHHHHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 5555554331 012 4577888887664 344 66666 5655699999999999999987764
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.16 E-value=5.8e-11 Score=109.90 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=64.5
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccc
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSI 282 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~ 282 (474)
.+.+|+++++.+...+.+.+.+..++... ... .+++++|+||||||||++++++++.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35689999987755555555565554321 111 12789999999999999999999988 567777776654
Q ss_pred cC-------hhHHHHHHHhhcCCcEEEEeccccc
Q 011935 283 YS-------NSDLRRILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 283 ~~-------~~~l~~l~~~~~~~sIl~iDeiD~l 309 (474)
.. ...+...+.......+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 21 1111222333344579999999765
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.05 E-value=2.6e-10 Score=116.28 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=86.0
Q ss_pred hCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCC
Q 011935 241 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGA 320 (474)
Q Consensus 241 ~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~ 320 (474)
++++++..++|+||||+|||++++++++.++..++.++... ......+....+..++++||++..... .+...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~-~r~l~-- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE-SRDLP-- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT-TTTCC--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH-Hhhcc--
Confidence 37888889999999999999999999999887765533322 222223444567788999999987541 11100
Q ss_pred CCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCC
Q 011935 321 SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 378 (474)
Q Consensus 321 ~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~ 378 (474)
.......+..+.+.+||. +.++++||+++.+ +++++|||++..+...+
T Consensus 237 --~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 --SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp --CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred --ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 001112456777888763 4578899999999 89999999999887766
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.00 E-value=2.8e-10 Score=113.07 Aligned_cols=96 Identities=24% Similarity=0.378 Sum_probs=61.3
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC----CcEEEEeccccc
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR----FDIYDLELTSIY 283 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~----~~~~~l~~~~~~ 283 (474)
+.+|+++.+.+..+..+.+.+..++.. .+..++.+++||||||||||+|+.++|+++. .+++.+++.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999987664445555555555432 1222357999999999999999999998765 677767665432
Q ss_pred -------ChhHHHHHHHhhcCCcEEEEeccccc
Q 011935 284 -------SNSDLRRILLSTTNRSILVIEDVDCS 309 (474)
Q Consensus 284 -------~~~~l~~l~~~~~~~sIl~iDeiD~l 309 (474)
....+...+.......+|+||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11111122222345679999999754
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=6.9e-10 Score=130.62 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=92.6
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhh----------HHHHHH------hCCC----------CCcc--ceecCCCCCcHH
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRR----------KEFYRR------VGKA----------WKRG--YLLYGPPGTGKS 260 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~----------~~~~~~------~g~~----------~~rg--iLL~GppGtGKT 260 (474)
.+|+++.|.++.|+.+.+.+..++.. ++.|+. .|.. +|+| +|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999998854 345554 2222 4455 999999999999
Q ss_pred HHHHHHHHHh---CCcEEEEeccccc----------------------ChhHHHHHHHh--hcCCcEEEEeccccccccc
Q 011935 261 SLIAAMANYL---RFDIYDLELTSIY----------------------SNSDLRRILLS--TTNRSILVIEDVDCSVEMK 313 (474)
Q Consensus 261 ~la~alA~~l---~~~~~~l~~~~~~----------------------~~~~l~~l~~~--~~~~sIl~iDeiD~l~~~~ 313 (474)
+||+++|.+. +-+.+.++..... ++..++.++.. ...+++|++|++|++++..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999876 3444444443321 24456555543 3469999999999998753
Q ss_pred ccCCCCCC-CCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 314 DRQNDGAS-VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 314 ~~~~~~~~-~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
...+.... ......+.++++|..++++... .+++|| +||+.
T Consensus 1177 ~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred ccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 32111111 1134456789999999986544 235554 77765
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.92 E-value=1.5e-09 Score=100.81 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCC
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGAS 321 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~ 321 (474)
|+|.++++|||||||||||++|.++|+.++-.++.+.-+. +. ..+.......|++|||+|.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~~~----------- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATTTC----------- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECHHH-----------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCchh-----------
Confidence 4666778999999999999999999999976544321111 10 011222345699999998431
Q ss_pred CCCchhhHHhhHHhhhcCcc----cCCC-----CceEEEEecCCC---CCCCccccCCCccceEEEeCCC
Q 011935 322 VGSNTKLTLSGILNFIDGLW----SSCG-----DERIIVFTTNHK---ERIDPALLRPGRMDVHINMSYC 379 (474)
Q Consensus 322 ~~~~~~~~l~~LL~~idg~~----~~~~-----~~~iiI~tTN~~---~~Ld~aLlrpGRfd~~I~~~~p 379 (474)
....-..+-+.+||-. .... ....+|.|||.. +..-+.|.. |+- .+.|+.|
T Consensus 117 ----~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 117 ----WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp ----HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred ----HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 1111234556666631 0000 123578899964 222245666 774 6677644
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.90 E-value=1.6e-09 Score=117.31 Aligned_cols=53 Identities=34% Similarity=0.335 Sum_probs=43.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
..+|..|++++|.+.+++.+...+. ....++|+||||||||+++++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4567889999999988876655443 1358999999999999999999998853
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=1.5e-09 Score=96.14 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=66.5
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGAS 321 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~ 321 (474)
....++|+||+|+|||+|++++++.+ |..++.++..++.... -..++.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~lLilDE~~~~~~---------- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD-------AAFEAEYLAVDQVEKLGN---------- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG-------GGGGCSEEEEESTTCCCS----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH-------HHhCCCEEEEeCccccCh----------
Confidence 35679999999999999999999988 6778888877765431 134678999999987532
Q ss_pred CCCchhhHHhhHHhhhcCcccCCCCceEEEEecC-CCCCCC--ccccCCCccce
Q 011935 322 VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKERID--PALLRPGRMDV 372 (474)
Q Consensus 322 ~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN-~~~~Ld--~aLlrpGRfd~ 372 (474)
..+..+..+++.+. .. +..++|+||| .|..+. ++|.. |+..
T Consensus 98 ---~~~~~l~~li~~~~---~~--g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 98 ---EEQALLFSIFNRFR---NS--GKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp ---HHHHHHHHHHHHHH---HH--TCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred ---HHHHHHHHHHHHHH---Hc--CCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 12344455555432 21 1233555666 455443 67776 6653
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=5.2e-08 Score=96.96 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=92.6
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc-----c
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI-----Y 283 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~-----~ 283 (474)
...+.++|.++..+.+.+ +.. +.++++||+|+|||+|++.+++.++..++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345678898887776655 331 478999999999999999999998877777776542 1
Q ss_pred Ch-----------------------------------------------hHHHHHH---Hhhc-CCcEEEEecccccccc
Q 011935 284 SN-----------------------------------------------SDLRRIL---LSTT-NRSILVIEDVDCSVEM 312 (474)
Q Consensus 284 ~~-----------------------------------------------~~l~~l~---~~~~-~~sIl~iDeiD~l~~~ 312 (474)
+. ..+..++ .... .+.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 10 1122222 2222 3789999999987430
Q ss_pred cccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC---------CCCccccCCCccceEEEeCCCCHHH
Q 011935 313 KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE---------RIDPALLRPGRMDVHINMSYCTVHG 383 (474)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~---------~Ld~aLlrpGRfd~~I~~~~p~~~~ 383 (474)
. .......+..+.+. . .++.+|+|++... .....+ .||+...|.++..+.++
T Consensus 153 ----~-----~~~~~~~l~~~~~~---~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 153 ----R-----GVNLLPALAYAYDN---L-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREE 213 (357)
T ss_dssp ----T-----TCCCHHHHHHHHHH---C-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHH
T ss_pred ----C-----chhHHHHHHHHHHc---C-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHH
Confidence 0 01111222222222 1 2355666665432 111222 34776789999999999
Q ss_pred HHHHHHHhhc
Q 011935 384 FKVLASNYLG 393 (474)
Q Consensus 384 ~~~l~~~~l~ 393 (474)
..+++...+.
T Consensus 214 ~~~~l~~~~~ 223 (357)
T 2fna_A 214 AIEFLRRGFQ 223 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.79 E-value=6.6e-07 Score=88.77 Aligned_cols=178 Identities=17% Similarity=0.122 Sum_probs=102.1
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc----
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY---- 283 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~---- 283 (474)
+..-+.++|.++..+.+.+.+.. | +.++++||+|+|||+|++.+++..+ .+.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34456789999888887665441 1 5899999999999999999999886 5555553321
Q ss_pred --Ch------------------------------------hHHHHH---HHhh---cCCcEEEEecccccccccccCCCC
Q 011935 284 --SN------------------------------------SDLRRI---LLST---TNRSILVIEDVDCSVEMKDRQNDG 319 (474)
Q Consensus 284 --~~------------------------------------~~l~~l---~~~~---~~~sIl~iDeiD~l~~~~~~~~~~ 319 (474)
+. ..+..+ +... ..+.+|+|||++.+....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~------ 144 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG------ 144 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT------
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC------
Confidence 10 112222 2111 248999999999884310
Q ss_pred CCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC---------CCCccccCCCccceEEEeCCCCHHHHHHHHHH
Q 011935 320 ASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE---------RIDPALLRPGRMDVHINMSYCTVHGFKVLASN 390 (474)
Q Consensus 320 ~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~---------~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~ 390 (474)
.......+..|-..++.. .++.+|+|+.... .....+. ||+...|++++.+.++..+++..
T Consensus 145 ---~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 145 ---SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp ---TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHH
T ss_pred ---ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHH
Confidence 001112222222333321 2355566654321 1122232 47767899999999999999988
Q ss_pred hhcccCCCCCcHHHHHhhhcCCCCCHHHH
Q 011935 391 YLGIKGKSHSLFGEIEGLIQSTDVTPAEV 419 (474)
Q Consensus 391 ~l~~~~~~~~l~~~i~~l~~~~~~tpa~i 419 (474)
.+...+ .....+.+..+...++-.|.-+
T Consensus 215 ~~~~~~-~~~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 215 GFREVN-LDVPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp HHHTTT-CCCCHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcC-CCCCHHHHHHHHHHhCCCHHHH
Confidence 765332 1112234444444444455444
No 94
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.79 E-value=6.3e-09 Score=96.78 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=77.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh--------C-CcEEEEecccccC---------------------hhHHHHHHH-hh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL--------R-FDIYDLELTSIYS---------------------NSDLRRILL-ST 295 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l--------~-~~~~~l~~~~~~~---------------------~~~l~~l~~-~~ 295 (474)
--+|++|+||||||++|.+++... | .+++..++.++.. ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 357899999999999998875443 4 6676666554321 012222211 12
Q ss_pred cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEE
Q 011935 296 TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHIN 375 (474)
Q Consensus 296 ~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~ 375 (474)
..++||+|||++.+.+.+. ... . . ..++..+..- .....-||++|+.++.|+.++++ |++.+++
T Consensus 86 ~~~~vliIDEAq~l~~~~~--~~~----e-~----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~ 149 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARS--AGS----K-I----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYH 149 (199)
T ss_dssp GTTCEEEETTGGGTSBCCC--TTC----C-C----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--TEEEEEE
T ss_pred cCceEEEEEChhhhccCcc--ccc----h-h----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--HhheEEE
Confidence 3489999999999865221 110 0 1 1244444321 12346778888889999999998 9999999
Q ss_pred eCCCCHHH
Q 011935 376 MSYCTVHG 383 (474)
Q Consensus 376 ~~~p~~~~ 383 (474)
++.|....
T Consensus 150 l~~~~~~~ 157 (199)
T 2r2a_A 150 IASNKMGM 157 (199)
T ss_dssp EEECSSCC
T ss_pred EcCcccCc
Confidence 98865443
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.79 E-value=1.3e-08 Score=124.77 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=95.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhc-CCcEEEEecccccccccccCCCCCCCCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGS 324 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~ 324 (474)
..|.+++||||||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++.+++||++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 468899999999999999999999999999999999888899999887765 579999999998732
Q ss_pred chhhHHhhHH----hhhc---------CcccCCCCceEEEEecC----CCCCCCccccCCCccceEEEeCCCCHHHHHHH
Q 011935 325 NTKLTLSGIL----NFID---------GLWSSCGDERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGFKVL 387 (474)
Q Consensus 325 ~~~~~l~~LL----~~id---------g~~~~~~~~~iiI~tTN----~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l 387 (474)
.....+++.+ +.+. |-.-.......|++|.| ....|+++|.+ || +.|.|..|+.+...++
T Consensus 712 evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 712 KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHH
Confidence 1122222222 2221 10001112345778888 44679999998 88 7899999999987777
Q ss_pred HHHh
Q 011935 388 ASNY 391 (474)
Q Consensus 388 ~~~~ 391 (474)
.-.-
T Consensus 789 ~l~s 792 (2695)
T 4akg_A 789 ILQI 792 (2695)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5433
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.74 E-value=5.1e-09 Score=103.78 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=64.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCc--EEEEecccc---c--C-hhHHHHHHHhhcCCcEEEEeccccccccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD--IYDLELTSI---Y--S-NSDLRRILLSTTNRSILVIEDVDCSVEMK 313 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~--~~~l~~~~~---~--~-~~~l~~l~~~~~~~sIl~iDeiD~l~~~~ 313 (474)
|.+.++.++|+||||||||+|+.++|...+.. ++.++..+. . . +..+..+........+||||+|+.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 44556678999999999999999999876554 444411111 1 1 12222233222222299999999985422
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccc
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 364 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aL 364 (474)
.. .+. .......+.+++..++++... .++.+|++|| +...|+++
T Consensus 199 ~~--~s~--~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GG--NTT--SGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred cc--ccc--cchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 11 000 111234456666666554332 2367778888 66677664
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.64 E-value=6.9e-07 Score=90.75 Aligned_cols=193 Identities=18% Similarity=0.223 Sum_probs=115.6
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCc--EEEEecccccChhHHHH
Q 011935 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFD--IYDLELTSIYSNSDLRR 290 (474)
Q Consensus 213 ~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~--~~~l~~~~~~~~~~l~~ 290 (474)
.++|......++...+.... +....+|++|++||||+.+++++....+.. ++.++|+.+..+.-...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 56788777777766655432 123569999999999999999999887654 99999998854332333
Q ss_pred HH-----------------HhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC-cccCCCC------
Q 011935 291 IL-----------------LSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-LWSSCGD------ 346 (474)
Q Consensus 291 l~-----------------~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-~~~~~~~------ 346 (474)
+| .+..+.++||||||+.+.. .....||..++. .....|.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~----------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ----------------RVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH----------------HHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH----------------HHHHHHHHHHHhCCcccCCCCcceee
Confidence 33 1223567999999998832 233455555542 1111111
Q ss_pred ceEEEEecCCC-------CCCCccccCCCccce-EEEeCCCCH--HHHHHHHHHhhcccCCCCCcHHHHHhhh-cCCCCC
Q 011935 347 ERIIVFTTNHK-------ERIDPALLRPGRMDV-HINMSYCTV--HGFKVLASNYLGIKGKSHSLFGEIEGLI-QSTDVT 415 (474)
Q Consensus 347 ~~iiI~tTN~~-------~~Ld~aLlrpGRfd~-~I~~~~p~~--~~~~~l~~~~l~~~~~~~~l~~~i~~l~-~~~~~t 415 (474)
++-+|++||.. ..+.+.|.. |+.. .|++|+... ++...|+.+|+.... .++- ....++
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~---------~~~~~~~~~~~ 331 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFA---------KEYKKNCFELS 331 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHH---------HHTTCCCCCBC
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHH---------HHcCCCCCCcC
Confidence 24577777742 233344444 4443 577887765 567778887775321 0111 113466
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 011935 416 PAEVAEELMKADDADVALEGLVNFLKRKRI 445 (474)
Q Consensus 416 pa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 445 (474)
|.-+ +.|..+.-|- .+++|.+.++..-.
T Consensus 332 ~~a~-~~L~~~~wpG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 332 EETK-EYLMKQEWKG-NVRELKNLIERAVI 359 (368)
T ss_dssp HHHH-HHHHTCCCTT-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhCCCCc-HHHHHHHHHHHHHH
Confidence 6554 5566554332 25777777766543
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.63 E-value=1.6e-07 Score=116.09 Aligned_cols=135 Identities=16% Similarity=0.360 Sum_probs=92.8
Q ss_pred CccceecCCCCCcHHHHHHH-HHHHhCCcEEEEecccccChhHHHHHHHhh------------------cCCcEEEEecc
Q 011935 246 KRGYLLYGPPGTGKSSLIAA-MANYLRFDIYDLELTSIYSNSDLRRILLST------------------TNRSILVIEDV 306 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~a-lA~~l~~~~~~l~~~~~~~~~~l~~l~~~~------------------~~~sIl~iDei 306 (474)
.+++||+||||||||++++. +++..+.+++.++++.-.+...+...+... .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 47899999999999988765 444447778899999888777777777531 01259999999
Q ss_pred cccccccccCCCCCCCCCchhhHHhhHHhhhc--CcccCCC------CceEEEEecCCC-----CCCCccccCCCccceE
Q 011935 307 DCSVEMKDRQNDGASVGSNTKLTLSGILNFID--GLWSSCG------DERIIVFTTNHK-----ERIDPALLRPGRMDVH 373 (474)
Q Consensus 307 D~l~~~~~~~~~~~~~~~~~~~~l~~LL~~id--g~~~~~~------~~~iiI~tTN~~-----~~Ld~aLlrpGRfd~~ 373 (474)
+.-.. +. -..+..+.-|...+| |++.... .++.+|+|+|.| ..|+++++| ||. .
T Consensus 1384 Nmp~~--D~--------yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1384 NLPST--DK--------YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp TCCCC--CT--------TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred CCCCc--cc--------cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 85321 11 111223333333433 3332211 346788999987 468999999 996 4
Q ss_pred EEeCCCCHHHHHHHHHHhhc
Q 011935 374 INMSYCTVHGFKVLASNYLG 393 (474)
Q Consensus 374 I~~~~p~~~~~~~l~~~~l~ 393 (474)
|.+++|+.++...|+..++.
T Consensus 1451 i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 89999999999999877654
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.61 E-value=8.2e-08 Score=92.83 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=68.7
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhcCCcEEEEecccccccccccCCCCCCCC
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTTNRSILVIEDVDCSVEMKDRQNDGASVG 323 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~ 323 (474)
+++.+++||||||||||+++.|||+.+..-. .++.++. ...+.....+.|++.||....-+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~G-~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~~d------------ 162 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTNE------NFPFNDCVDKMVIWWEEGKMTAK------------ 162 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTCS------SCTTGGGSSCSEEEECSCCEETT------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcccc-eeecccc------ccccccccccEEEEeccccchhH------------
Confidence 4467899999999999999999999876522 2233211 11234445667777777764421
Q ss_pred CchhhHHhhHHh----hhcCcccC--CCCceEEEEecCC-C----------CCCCccccCCCccceEEEeC--------C
Q 011935 324 SNTKLTLSGILN----FIDGLWSS--CGDERIIVFTTNH-K----------ERIDPALLRPGRMDVHINMS--------Y 378 (474)
Q Consensus 324 ~~~~~~l~~LL~----~idg~~~~--~~~~~iiI~tTN~-~----------~~Ld~aLlrpGRfd~~I~~~--------~ 378 (474)
....+..++. .+|..... .-....+|+|||. + +...++|.+ |+ ..+.|+ .
T Consensus 163 --~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p~~~~~ 237 (267)
T 1u0j_A 163 --VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLDHDFGK 237 (267)
T ss_dssp --THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCCTTSCC
T ss_pred --HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCCcccCC
Confidence 1112222221 11111110 0022457788886 2 244577888 87 567887 4
Q ss_pred CCHHHHHHHHH
Q 011935 379 CTVHGFKVLAS 389 (474)
Q Consensus 379 p~~~~~~~l~~ 389 (474)
.+.++.+..+.
T Consensus 238 lt~~~~~~f~~ 248 (267)
T 1u0j_A 238 VTKQEVKDFFR 248 (267)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666655555
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.49 E-value=5.8e-07 Score=91.90 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=113.2
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhC---CcEEEEecccccChhHH
Q 011935 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIYSNSDL 288 (474)
Q Consensus 212 ~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~~~~~l 288 (474)
+.++|.....+.+.+.+.... +....+|++|++||||+++|+++..... .+++.++|+.+..+---
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 456777777777777666432 2245789999999999999999998764 68999999987432212
Q ss_pred HHHHH-----------------hhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcC-ccc-CC-----
Q 011935 289 RRILL-----------------STTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDG-LWS-SC----- 344 (474)
Q Consensus 289 ~~l~~-----------------~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg-~~~-~~----- 344 (474)
..+|. +....++||||||+.+.. .....|+..++. ... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~----------------~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL----------------EAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH----------------HHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH----------------HHHHHHHHHHhcCcEEeCCCCcee
Confidence 22331 123468999999998832 233445555442 100 00
Q ss_pred CCceEEEEecCCC-------CCCCccccCCCccc-eEEEeCCCCH--HHHHHHHHHhhcccCCCCCcHHHHHhhhcC-CC
Q 011935 345 GDERIIVFTTNHK-------ERIDPALLRPGRMD-VHINMSYCTV--HGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TD 413 (474)
Q Consensus 345 ~~~~iiI~tTN~~-------~~Ld~aLlrpGRfd-~~I~~~~p~~--~~~~~l~~~~l~~~~~~~~l~~~i~~l~~~-~~ 413 (474)
..++.||+|||.. ..+.+.|.- |+. ..|++|+... ++...|+.+|+.... .+.-.. ..
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~---------~~~~~~~~~ 338 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFS---------RKYAKEVEG 338 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHH---------HHTTCCCCE
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHH---------HHcCCCCCC
Confidence 1235678888863 233444443 443 4566666542 556677777764321 001111 23
Q ss_pred CCHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 011935 414 VTPAEVAEELMKADDADVALEGLVNFLKRKRI 445 (474)
Q Consensus 414 ~tpa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 445 (474)
+++.-+ +.|..+.-| -.+++|.+.++..-.
T Consensus 339 ~~~~a~-~~l~~~~wp-GNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 339 FTKSAQ-ELLLSYPWY-GNVRELKNVIERAVL 368 (387)
T ss_dssp ECHHHH-HHHHHSCCT-THHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHhCCCC-cHHHHHHHHHHHHHH
Confidence 665544 445554433 246777777766554
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.43 E-value=2.7e-07 Score=95.63 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=81.7
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHH-HHHhCCcEEEEecccccChhHHH---
Q 011935 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-ANYLRFDIYDLELTSIYSNSDLR--- 289 (474)
Q Consensus 214 l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~al-A~~l~~~~~~l~~~~~~~~~~l~--- 289 (474)
|.|++.+|..|.-.+..-- +. ....-++||.|+||| ||.+++++ ++.+....+..... .+...|.
T Consensus 215 I~G~e~vK~aLll~L~GG~--~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV--GK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC--SS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcCCc--cc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 7788888776644332100 00 011226999999999 99999999 77665544432211 0111111
Q ss_pred ---------HHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcc-c----CCCCceEEEEecC
Q 011935 290 ---------RILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLW-S----SCGDERIIVFTTN 355 (474)
Q Consensus 290 ---------~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~-~----~~~~~~iiI~tTN 355 (474)
.-.......+|+|+|||+.+- ..+.+.|+..|+.-. + .-.....||+|+|
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~----------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP----------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC----------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC----------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 000112357899999999773 345667777765210 0 1123467899999
Q ss_pred CCC-----------CCCccccCCCccceEEE-eCCCCHHH
Q 011935 356 HKE-----------RIDPALLRPGRMDVHIN-MSYCTVHG 383 (474)
Q Consensus 356 ~~~-----------~Ld~aLlrpGRfd~~I~-~~~p~~~~ 383 (474)
..+ .|+++++. |||..+. +++|+.+.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 765 78899999 9987544 57777654
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=1.3e-06 Score=108.01 Aligned_cols=128 Identities=18% Similarity=0.152 Sum_probs=94.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhhc-CCcEEEEecccccccccccCCCCCCCCCc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLSTT-NRSILVIEDVDCSVEMKDRQNDGASVGSN 325 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~~-~~sIl~iDeiD~l~~~~~~~~~~~~~~~~ 325 (474)
.|..+.||+|||||.+++.+|+.+|..++.++|++-.+...+.++|..+. .++..++||++++-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~-------------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE-------------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH--------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH--------------
Confidence 46689999999999999999999999999999999888888888887765 588999999998731
Q ss_pred hhhHHhhHHhhhc-----------------CcccCCCCceEEEEecC----CCCCCCccccCCCccceEEEeCCCCHHHH
Q 011935 326 TKLTLSGILNFID-----------------GLWSSCGDERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGF 384 (474)
Q Consensus 326 ~~~~l~~LL~~id-----------------g~~~~~~~~~iiI~tTN----~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~ 384 (474)
.+++.+...+. |-.-.-.....+++|.| ....|+++|.. || +.|.|+.||.+..
T Consensus 671 --~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 671 --RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMI 745 (3245)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHH
Confidence 22222222111 10000112345778888 34689999998 88 6799999999988
Q ss_pred HHHHHHhhc
Q 011935 385 KVLASNYLG 393 (474)
Q Consensus 385 ~~l~~~~l~ 393 (474)
.++.-.-.+
T Consensus 746 ~ei~L~s~G 754 (3245)
T 3vkg_A 746 AQVMLYSQG 754 (3245)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHcc
Confidence 777644433
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.27 E-value=9.2e-07 Score=105.55 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=69.2
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc---------------------ChhHHHHHHH---hh
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY---------------------SNSDLRRILL---ST 295 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~---~~ 295 (474)
++.+++++||||||||||+||.++|.+. |..+..++..... ..+.+.+.+. +.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7778899999999999999999998765 4555555555321 1112222222 23
Q ss_pred cCCcEEEEeccccccccccc-CCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCC
Q 011935 296 TNRSILVIEDVDCSVEMKDR-QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 357 (474)
Q Consensus 296 ~~~sIl~iDeiD~l~~~~~~-~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~ 357 (474)
.++++||||+++.+.+.... .....+......+.++++|..|++..... .++|++||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~---~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS---NTLLIFINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT---TCEEEEEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhC---CcEEEEEccc
Confidence 57999999999988763211 11111001113566788888887765542 2455566643
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=7.2e-06 Score=74.54 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.+.|.||+|+|||||++.|++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3679999999999999999998865443
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.96 E-value=4.6e-05 Score=76.05 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=81.1
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh---CC-cEEEEecccccChhHHHHHHHhh------cCCcEEEEecccc-ccccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL---RF-DIYDLELTSIYSNSDLRRILLST------TNRSILVIEDVDC-SVEMK 313 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l---~~-~~~~l~~~~~~~~~~l~~l~~~~------~~~sIl~iDeiD~-l~~~~ 313 (474)
.+..||||||+|+||++.++++++.+ +. +...+... .+.++++++..+ ..+-|++|||+|. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 35689999999999999999998865 33 22222222 224455555443 2467999999987 52
Q ss_pred ccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC------CCCccccCCCccceEEEeCCCCHHHHHHH
Q 011935 314 DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE------RIDPALLRPGRMDVHINMSYCTVHGFKVL 387 (474)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~------~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l 387 (474)
....+.|+..++.. +.+.++|++|+.++ .+.+++.. |+ ..+++..++..+....
T Consensus 91 -------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 91 -------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp -------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred -------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 12345677777642 23455555555433 45567777 66 5789999998888877
Q ss_pred HHHhhcc
Q 011935 388 ASNYLGI 394 (474)
Q Consensus 388 ~~~~l~~ 394 (474)
++..+..
T Consensus 151 l~~~~~~ 157 (343)
T 1jr3_D 151 VAARAKQ 157 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777643
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.71 E-value=0.00038 Score=74.46 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=36.7
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHH
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~ 268 (474)
|.....++|.+...+.|.+.+... ....+-++++||+|+|||+||..+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 334456899999888887655411 12245688999999999999999874
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.67 E-value=0.00014 Score=66.98 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~ 281 (474)
|++.+.-++|+||||+|||+++..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555666899999999999999999985566666666544
No 108
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.61 E-value=2.5e-05 Score=70.44 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=29.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
++.++|.||||+|||++++.+|..+++++++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999999988654
No 109
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.60 E-value=0.00016 Score=72.74 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC---------------------hhHHHHHHH---h
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS---------------------NSDLRRILL---S 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~~l~~---~ 294 (474)
|++...-++|+||||+|||+|+..+|..+ +..++.++...... ...+...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35555668999999999999999998764 45565565543211 112222222 2
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24678999999988864
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.59 E-value=3.2e-05 Score=69.20 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELT 280 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~ 280 (474)
.-++|.||||+|||++++++|..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4688999999999999999999999888876544
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.55 E-value=7.4e-05 Score=66.15 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=28.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-++|.||||+||||+++.++..+++++++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999887665
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=3.6e-05 Score=70.67 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
....++|.||||+|||++++++|+.+++.+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457899999999999999999999999887654
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.55 E-value=0.00018 Score=67.44 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=30.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH--h-------CCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY--L-------RFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~--l-------~~~~~~l~~~~ 281 (474)
|++...-++|+||||+|||+++..+|.. + +...+.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4555666899999999999999999985 3 34566665544
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.53 E-value=3.6e-05 Score=69.70 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=29.6
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.+.+.-++|.|+||+|||++++.++..+++.++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34456789999999999999999999999887653
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.51 E-value=0.00079 Score=77.75 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=85.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh-------CCcEEEEe
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------RFDIYDLE 278 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l-------~~~~~~l~ 278 (474)
..|.....++|.++..++|.+.+... ....+-+.|+|++|+|||+||+.+++.. ...++.++
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~ 186 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE
Confidence 34555667899999998887765311 1223567899999999999999988652 22344555
Q ss_pred cccccC---------------------------hhHHHHHHHhh----cCCcEEEEecccccccccccCCCCCCCCCchh
Q 011935 279 LTSIYS---------------------------NSDLRRILLST----TNRSILVIEDVDCSVEMKDRQNDGASVGSNTK 327 (474)
Q Consensus 279 ~~~~~~---------------------------~~~l~~l~~~~----~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~ 327 (474)
++.... ...+...+... .++.+|||||++...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------- 249 (1249)
T 3sfz_A 187 IGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------- 249 (1249)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----------------
T ss_pred ECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----------------
Confidence 544211 01122222211 237899999998431
Q ss_pred hHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCC-CCHHHHHHHHHHhhcc
Q 011935 328 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY-CTVHGFKVLASNYLGI 394 (474)
Q Consensus 328 ~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~-p~~~~~~~l~~~~l~~ 394 (474)
. +..+ +.+.-||+||..+.-... .. .....+.++. .+.++..+++..+...
T Consensus 250 ----~-~~~~-------~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 250 ----V-LKAF-------DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp ----H-HTTT-------CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred ----H-HHhh-------cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 1 1111 122356677775543211 11 2234567775 7888888888877644
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.48 E-value=0.00032 Score=64.93 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=23.9
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++.+..++|+||||+|||+|++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555668899999999999999999654
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.46 E-value=0.00039 Score=70.32 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc---------------------ChhHHHHHHHh---
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY---------------------SNSDLRRILLS--- 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~~--- 294 (474)
|++..+-++|+||||+|||+|+..+|..+ +..++.+++..-. +...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566678999999999999999888754 5566666544321 11223333322
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
.....+||||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 24578999999998863
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.43 E-value=0.00031 Score=66.06 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHH
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMA 267 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA 267 (474)
|++.+.-+.|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44556668999999999999999998
No 119
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.43 E-value=0.00043 Score=72.03 Aligned_cols=63 Identities=25% Similarity=0.262 Sum_probs=38.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CC-cEEEEecc
Q 011935 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RF-DIYDLELT 280 (474)
Q Consensus 205 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~-~~~~l~~~ 280 (474)
-..|.+|+++ .+++++.+...+ .++... .+.+++.||||||||+++.+++..+ +. .++.+..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~~~~-~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFNIVM-KAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp ----CCSSCC--CHHHHHHHHHHH-HHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred ccCCCccccC--CHHHHHHHHHHH-HHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 4567788876 455555554332 233221 2378999999999999999999876 33 45555443
No 120
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.42 E-value=6.7e-05 Score=67.59 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=28.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..++|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35889999999999999999999999987654
No 121
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.42 E-value=0.00027 Score=71.23 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=48.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc---------------------ChhHHHHHHH---h
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY---------------------SNSDLRRILL---S 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~---------------------~~~~l~~l~~---~ 294 (474)
|++..+-++|+||||+|||+|+..+|..+ +..++.++..... +...+..++. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46666779999999999999999988754 5566666653211 1122333332 2
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
...+.+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 34678999999998864
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.42 E-value=6.6e-05 Score=67.49 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=28.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++.++|+||||+|||++++++|..+++.++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45689999999999999999999999887654
No 123
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.40 E-value=6.4e-05 Score=67.30 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=27.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.++|.||||+|||+++++||..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999887754
No 124
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.40 E-value=7e-05 Score=66.52 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=29.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..++|.|+||||||++++.+|..+++++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57899999999999999999999999988653
No 125
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.40 E-value=0.00025 Score=71.30 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=45.9
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccC---------------------hhHHHHHHH---h
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYS---------------------NSDLRRILL---S 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~---------------------~~~l~~l~~---~ 294 (474)
|++..+-++|+||||+|||+|+..+|..+ +..+..++...-.. ...+..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556669999999999999999998654 45555555433211 112222222 2
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
...+.+||||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 23589999999998863
No 126
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=9.4e-05 Score=67.42 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=21.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHh---CCcEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL---RFDIYD 276 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l---~~~~~~ 276 (474)
-++++||||+|||+++..++..+ +..++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~ 36 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAV 36 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999986666543 444443
No 127
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=8.7e-05 Score=65.99 Aligned_cols=30 Identities=40% Similarity=0.729 Sum_probs=26.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
..+.|.||||+|||++++.+|..++..+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468899999999999999999999986664
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.35 E-value=8e-05 Score=67.49 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=28.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHH-hCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY-LRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~-l~~~~~~l~ 278 (474)
+..++|+|+||||||++++.+|.. +|+++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345899999999999999999999 787776543
No 129
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.33 E-value=0.00037 Score=83.57 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=51.2
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccccCh------------------------hHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIYSN------------------------SDLRRILLS 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~~~------------------------~~l~~l~~~ 294 (474)
|++.++.++|+||||||||+|+.+++.+. |...+.+++.+.... ..+...+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778889999999999999999988643 667777766654311 122233444
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
...+.+|+||++..+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999999855
No 130
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.28 E-value=0.00011 Score=65.26 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.0
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..++|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35889999999999999999999998877643
No 131
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00013 Score=66.72 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.-++|.||||+|||++++.+|..++++++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4588999999999999999999999887765
No 132
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00037 Score=69.76 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=30.4
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~ 281 (474)
|++...-++|+||||+|||+++..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45555668999999999999999999863 44566666544
No 133
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.26 E-value=0.00014 Score=69.59 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=29.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLELT 280 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~~ 280 (474)
-++|.||||+|||+++++||..++..++..|.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 468999999999999999999999988877643
No 134
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.25 E-value=0.0007 Score=72.52 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=40.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccccc----------ChhHHHHHHHhhc-----------CCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSIY----------SNSDLRRILLSTT-----------NRSILV 302 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~~----------~~~~l~~l~~~~~-----------~~sIl~ 302 (474)
+.+++.||||||||+++.+++..+ +..+..+..+... ....+++++.... ...+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 568899999999999999998755 5666655433321 1122333332111 346999
Q ss_pred Eeccccc
Q 011935 303 IEDVDCS 309 (474)
Q Consensus 303 iDeiD~l 309 (474)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999765
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.23 E-value=0.0003 Score=70.71 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++...-+.|+||||+|||+|++.+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45556668999999999999999999876
No 136
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00013 Score=64.38 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
-++|.||||+|||++++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8899887764
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.23 E-value=0.00013 Score=65.82 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+.-++|.|+||+|||++++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 34588999999999999999999999877643
No 138
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.21 E-value=0.00034 Score=68.30 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=28.2
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
.+.-++|.||||+||||+++.++..++...+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568899999999999999999998544555554
No 139
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.21 E-value=0.00018 Score=65.83 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+.-++|.||||+|||++++.|+..++..+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 34689999999999999999999998877654
No 140
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.20 E-value=0.00083 Score=66.32 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=42.7
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHh-----CCcEEEEecccccC---------------------hhHH-HHHHHh-
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYL-----RFDIYDLELTSIYS---------------------NSDL-RRILLS- 294 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l-----~~~~~~l~~~~~~~---------------------~~~l-~~l~~~- 294 (474)
++.. -++++||||+|||+|+..++..+ +..+..++...-.. .+.+ ..+...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444 47899999999999987766443 45556565433211 1222 222222
Q ss_pred ----hcCCcEEEEeccccccc
Q 011935 295 ----TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ----~~~~sIl~iDeiD~l~~ 311 (474)
..++.+||||-|..+..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 23688999999999974
No 141
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.20 E-value=0.00014 Score=65.81 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=28.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+.-++|.||||+|||++++.+|..++.++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356889999999999999999999998877553
No 142
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.19 E-value=0.00016 Score=63.84 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.++|.|+||+|||++++.++..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999998887643
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.18 E-value=0.00015 Score=65.30 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.+.-++|.|+||+|||++++.++..++..+++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345688999999999999999999999877755
No 144
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.17 E-value=0.00014 Score=67.76 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=27.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
..++|.||||+|||++++.||..+++.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4588999999999999999999999887765
No 145
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00014 Score=65.49 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=26.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
..++|.||||+||||+++.+|+.+++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999999876644
No 146
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.14 E-value=0.00044 Score=68.60 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------RFDIYDLELTS 281 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---------~~~~~~l~~~~ 281 (474)
|++...-++|+||||+|||+++..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45666678999999999999999999765 45566666554
No 147
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00019 Score=66.47 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=26.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++|.||||+|||++++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 68999999999999999999999887765
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00016 Score=65.08 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=23.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-++|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999987
No 149
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.14 E-value=0.00017 Score=65.53 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=28.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+.-++|.||||+|||++++.+|..+++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45688999999999999999999999776654
No 150
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.12 E-value=0.00011 Score=65.39 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=23.9
Q ss_pred ccceecCCCCCcHHHHHHHHHH-HhCCcEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN-YLRFDIY 275 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~-~l~~~~~ 275 (474)
.-++|.||||+|||++++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4588999999999999999999 4554443
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.12 E-value=0.00021 Score=66.40 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=27.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.-++|.||||+||||+++.||..++..++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4688999999999999999999999877654
No 152
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.12 E-value=0.00021 Score=66.10 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=26.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++|.||||+|||++++.+|..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68999999999999999999999887755
No 153
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.11 E-value=0.00017 Score=67.40 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=28.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+.-++|.||||+|||++++.||..++..+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999999877654
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.10 E-value=0.00018 Score=65.04 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
++.+.-+.|.||||+||||+++.|++.++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 3445568899999999999999999986666555543
No 155
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.10 E-value=0.0085 Score=63.60 Aligned_cols=136 Identities=16% Similarity=0.138 Sum_probs=79.1
Q ss_pred ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHH----HhCC--c-EEEEeccccc--C-
Q 011935 215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN----YLRF--D-IYDLELTSIY--S- 284 (474)
Q Consensus 215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~----~l~~--~-~~~l~~~~~~--~- 284 (474)
+|.++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++ .... + .+.++.+... +
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999888876421 112245688999999999999999997 2322 1 2233433311 0
Q ss_pred ---------------------------hhHHHHHHHhh--cC-CcEEEEecccccccccccCCCCCCCCCchhhHHhhHH
Q 011935 285 ---------------------------NSDLRRILLST--TN-RSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGIL 334 (474)
Q Consensus 285 ---------------------------~~~l~~l~~~~--~~-~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL 334 (474)
...+...+... .+ +.+|||||++.... + . +
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~------------------~-~-~ 260 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET------------------I-R-W 260 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH------------------H-H-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh------------------h-c-c
Confidence 01122222222 23 78999999985310 1 1 1
Q ss_pred hhhcCcccCCCCceEEEEecCCCCCCCccccCCCccceEEEeCCCCHHHHHHHHHHhh
Q 011935 335 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 392 (474)
Q Consensus 335 ~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~~~l 392 (474)
... .+..||+||....-.. . .|..+..+.++..+.++-.+++..+.
T Consensus 261 ~~~--------~gs~ilvTTR~~~v~~---~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 261 AQE--------LRLRCLVTTRDVEISN---A-ASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp HHH--------TTCEEEEEESBGGGGG---G-CCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred ccc--------CCCEEEEEcCCHHHHH---H-cCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 111 1234666776532211 1 11233568999999999999999884
No 156
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.00075 Score=69.02 Aligned_cols=28 Identities=32% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~ 269 (474)
|++...-++|+||||+|||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4555566889999999999999977643
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00028 Score=62.86 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=26.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
..++|.||||+|||++++.++..+|..+++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458899999999999999999998876554
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.05 E-value=0.00041 Score=62.15 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+.-+.|.|++|+|||++++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 3457899999999999999999998 888887763
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.04 E-value=0.00026 Score=64.68 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=27.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.-++|.||||+|||++++.+++.+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35789999999999999999999998776643
No 160
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00029 Score=66.25 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
..++|.|+||+|||++++.||..+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999877654
No 161
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.00043 Score=66.05 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
.+..++|.||||+|||++++.++..++...+.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999865555555443
No 162
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.01 E-value=0.00019 Score=66.87 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=27.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+.-++|.||||+|||++++.||..++..+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4568999999999999999999999976554
No 163
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00025 Score=63.53 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=22.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.-++|.|+||+|||++++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999876
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.99 E-value=0.00044 Score=63.34 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=26.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+.-+.|.||||+|||++++.|++.+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999765543
No 165
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.98 E-value=0.00049 Score=61.96 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.7
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+.|.|+||+|||++++.+++.+ |++++..+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6799999999999999999998 888887753
No 166
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.96 E-value=0.0017 Score=60.99 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
-.+++.|+||+|||+++-.+|..+ |.++..+++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 458899999999999999998775 677665554
No 167
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.95 E-value=0.00035 Score=66.30 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
.+.-++|.||||+|||++++.|++.++...+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 355689999999999999999999998877654
No 168
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.92 E-value=0.00033 Score=64.80 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=26.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++|.||||+|||++++.||..+++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 68999999999999999999999877654
No 169
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.91 E-value=0.00045 Score=68.54 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=30.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
+..++|.||+|+|||+++..+|..++..++.+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999988888764
No 170
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.90 E-value=0.00054 Score=64.12 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=26.8
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.++-++|.||||+||+|.|+.||+.+++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3566889999999999999999999987654
No 171
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.86 E-value=0.00028 Score=70.74 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 217 DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 217 ~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
.+.+.+.+.+.+...+.. .....++|.||||+|||+++++||+.++++++.
T Consensus 4 ~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 345556665555543321 112358999999999999999999999887743
No 172
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.83 E-value=0.00064 Score=64.34 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=26.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+.-+.|.||||+||||+++.||..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568899999999999999999999876543
No 173
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.82 E-value=0.00064 Score=63.06 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
++|.||||+||+|.|+.||+.++++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 678999999999999999999987654
No 174
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.81 E-value=0.00066 Score=63.38 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.7
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
++|.||||+||||+++.||..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999999766554
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.80 E-value=0.0007 Score=62.83 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=26.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
.-+.|.||||+||||+++.+++.+++++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 357899999999999999999999987664
No 176
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.79 E-value=0.00066 Score=61.62 Aligned_cols=28 Identities=29% Similarity=0.687 Sum_probs=25.1
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
+.|.|+||+||||+++.+|+.++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6799999999999999999999986653
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00084 Score=60.67 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=26.4
Q ss_pred ceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+.|.||||+||||+++.+++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 5789999999999999999999 988876543
No 178
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.0014 Score=59.88 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=24.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
.-++|.||||+|||++++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 357899999999999999999998773
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.78 E-value=0.00046 Score=63.10 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=26.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-+.|.||+|+|||++++.+|+ +|+++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 367999999999999999999 888777654
No 180
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.77 E-value=0.00071 Score=61.60 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-CCcEEEEec
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-RFDIYDLEL 279 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-~~~~~~l~~ 279 (474)
.-+.|.||||+||||+++.++..+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 457899999999999999999998 577777654
No 181
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.76 E-value=0.0049 Score=63.98 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=55.2
Q ss_pred CcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCC-------------CCCCCccc
Q 011935 298 RSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH-------------KERIDPAL 364 (474)
Q Consensus 298 ~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~-------------~~~Ld~aL 364 (474)
|.|++|||+|.+. ....+.|+..++.- ... ++|+.||. ++.|+|.+
T Consensus 296 ~~VliIDEa~~l~----------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp ECEEEEESGGGCB----------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHH
T ss_pred ceEEEEechhhcC----------------HHHHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCChhH
Confidence 4799999999883 34567788887742 233 45544432 78899999
Q ss_pred cCCCccceEEEeCCCCHHHHHHHHHHhhcc
Q 011935 365 LRPGRMDVHINMSYCTVHGFKVLASNYLGI 394 (474)
Q Consensus 365 lrpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 394 (474)
++ ||.. +.|++++.++..++++.....
T Consensus 355 ~s--R~~~-~~~~~~~~~e~~~iL~~~~~~ 381 (456)
T 2c9o_A 355 LD--RVMI-IRTMLYTPQEMKQIIKIRAQT 381 (456)
T ss_dssp HT--TEEE-EECCCCCHHHHHHHHHHHHHH
T ss_pred Hh--hcce-eeCCCCCHHHHHHHHHHHHHH
Confidence 99 9976 699999999999999887643
No 182
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.76 E-value=0.00063 Score=65.08 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=29.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
+..+.|.||||+|||++++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457899999999999999999999999888754
No 183
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00047 Score=61.96 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=22.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
-++|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 184
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.74 E-value=0.00068 Score=61.86 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-+.|.||+|+|||++++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998888654
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.73 E-value=0.0011 Score=60.63 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=26.6
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
.+.-+.|.||+|+|||+++++||..+ |...+.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 34568899999999999999999988 44433444
No 186
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.71 E-value=0.00069 Score=62.13 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=27.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-+.|.|++|||||++++.++..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4679999999999999999999998887654
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.71 E-value=0.00058 Score=62.56 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
-+.|.||+|+||||+++.+|+ +|.++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 467999999999999999998 888877543
No 188
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.70 E-value=0.0068 Score=56.82 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc-------cc-------------ChhHHHHHHHhh---cCCcEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS-------IY-------------SNSDLRRILLST---TNRSIL 301 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~-------~~-------------~~~~l~~l~~~~---~~~sIl 301 (474)
-++++||||+|||+++..++..+ +..++.+.... +. ...++...+.+. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 36788999999999998887665 45555552111 11 112343333332 236799
Q ss_pred EEeccccc
Q 011935 302 VIEDVDCS 309 (474)
Q Consensus 302 ~iDeiD~l 309 (474)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 189
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.00097 Score=63.08 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=27.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+..+.|.||||+|||++++.||..+++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999999877654
No 190
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.00087 Score=64.19 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=27.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHH---hCCcEEEEec
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY---LRFDIYDLEL 279 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~---l~~~~~~l~~ 279 (474)
.-++|.|+||+|||++++.++.. .|+.++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 45889999999999999999998 6787774543
No 191
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.56 E-value=0.0021 Score=66.43 Aligned_cols=94 Identities=12% Similarity=0.252 Sum_probs=62.7
Q ss_pred HHHHhhcCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccC------CCCceEEEEec----CCCCC
Q 011935 290 RILLSTTNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSS------CGDERIIVFTT----NHKER 359 (474)
Q Consensus 290 ~l~~~~~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~------~~~~~iiI~tT----N~~~~ 359 (474)
..+..+...+||++||||++....+ + ...+....-....||..+++.... ...++++|+|. +.+.+
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~--~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d 318 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGE--Y--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 318 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSS--C--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred HHHHHhccCCeeeHHHHHHHhhccC--C--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence 3344444678999999999964211 1 111111222456788888874211 12567888886 34545
Q ss_pred CCccccCCCccceEEEeCCCCHHHHHHHHH
Q 011935 360 IDPALLRPGRMDVHINMSYCTVHGFKVLAS 389 (474)
Q Consensus 360 Ld~aLlrpGRfd~~I~~~~p~~~~~~~l~~ 389 (474)
+-|.|+. ||+.+|.++.++.+++..|+.
T Consensus 319 lipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 319 LIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp SCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred cchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 6688888 999999999999999999984
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.55 E-value=0.00057 Score=62.63 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
+.-++|.|+||+|||++++.++..++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3457899999999999999999987644
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.53 E-value=0.0024 Score=59.05 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++...-+.|.||+|+|||+|++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555668899999999999999999854
No 194
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0013 Score=60.30 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
...++-++|.||||+|||++++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567789999999999999999999885
No 195
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.50 E-value=0.00098 Score=60.53 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.0
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.-+.|.|++|+|||++++.+|.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 88877654
No 196
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.49 E-value=0.0013 Score=60.73 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
..+.|.|+||+|||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 45789999999999999999999998877653
No 197
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.49 E-value=0.0035 Score=74.34 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=51.0
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH---hCCcEEEEecccccC---------------------hhHHHHHHHh---
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LRFDIYDLELTSIYS---------------------NSDLRRILLS--- 294 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~---l~~~~~~l~~~~~~~---------------------~~~l~~l~~~--- 294 (474)
|++.++.++|+||||||||+||.++|.. .+..++.++...... ...+.+++..
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 5777888999999999999999998865 356677776655322 2233333333
Q ss_pred hcCCcEEEEeccccccc
Q 011935 295 TTNRSILVIEDVDCSVE 311 (474)
Q Consensus 295 ~~~~sIl~iDeiD~l~~ 311 (474)
...+.+||||.+..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 35689999999998875
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.43 E-value=0.002 Score=61.44 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=26.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
.-+.|.||+|+|||++++.||..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 357899999999999999999999987664
No 199
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.40 E-value=0.014 Score=61.98 Aligned_cols=74 Identities=9% Similarity=0.156 Sum_probs=49.2
Q ss_pred cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC--CCCccccCCCccceEEEe
Q 011935 299 SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE--RIDPALLRPGRMDVHINM 376 (474)
Q Consensus 299 sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~--~Ld~aLlrpGRfd~~I~~ 376 (474)
.+|+|||+..++... . + .+...+..+-..... -++.+|++|.+|. .++..++. -|...|.+
T Consensus 345 ivvVIDE~~~L~~~~---------~---~-~~~~~L~~Iar~GRa--~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~l 407 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------G---K-KVEELIARIAQKARA--AGIHLILATQRPSVDVITGLIKA--NIPTRIAF 407 (574)
T ss_dssp EEEEESCCTTHHHHT---------C---H-HHHHHHHHHHHHCTT--TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEE
T ss_pred EEEEEeCHHHHhhhh---------h---H-HHHHHHHHHHHHHhh--CCeEEEEEecCcccccccHHHHh--hhccEEEE
Confidence 589999999886411 0 1 122233333222222 4588999999986 78887776 77888899
Q ss_pred CCCCHHHHHHHHH
Q 011935 377 SYCTVHGFKVLAS 389 (474)
Q Consensus 377 ~~p~~~~~~~l~~ 389 (474)
...+..+.+.++.
T Consensus 408 rv~s~~Dsr~ILd 420 (574)
T 2iut_A 408 QVSSKIDSRTILD 420 (574)
T ss_dssp CCSCHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9999888777763
No 200
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.40 E-value=0.0014 Score=60.62 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=26.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.-+.|.|++|+|||++++.++. +|.++++.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4578999999999999999998 888777653
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.0008 Score=61.73 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=23.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
+.-++|.|+||+|||++++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999998643
No 202
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0023 Score=60.75 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=30.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCc--------EEEEeccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFD--------IYDLELTSIY 283 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~--------~~~l~~~~~~ 283 (474)
+.-+.|.||||+|||++++.|+..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3458899999999999999999999876 3345555554
No 203
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.36 E-value=0.0017 Score=60.96 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=27.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
..+.|.|++|+|||++++.+|..+|+++++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3477999999999999999999999877654
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.35 E-value=0.014 Score=60.11 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
++-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4568899999999999999999776 555555443
No 205
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.32 E-value=0.0092 Score=54.70 Aligned_cols=109 Identities=10% Similarity=0.134 Sum_probs=64.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccc--c-Ch-----------------------------hHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSI--Y-SN-----------------------------SDLRRI 291 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~--~-~~-----------------------------~~l~~l 291 (474)
..+++|+++|.|||++|-++|-.. |..+..+.+..- . ++ ......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 357899999999999999998654 677766633221 0 00 111122
Q ss_pred HHh----h--cCCcEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCCCCCcccc
Q 011935 292 LLS----T--TNRSILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALL 365 (474)
Q Consensus 292 ~~~----~--~~~sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~~Ld~aLl 365 (474)
+.. . ....+|++||+-...... -.....++..+.. ..+..-||+|+|.+ ++.|+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g-------------~l~~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~ 168 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD-------------YLPLEEVISALNA----RPGHQTVIITGRGC---HRDIL 168 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT-------------SSCHHHHHHHHHT----SCTTCEEEEECSSC---CHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC-------------CCCHHHHHHHHHh----CcCCCEEEEECCCC---cHHHH
Confidence 222 1 245799999996543200 0113345555542 23557788999974 56666
Q ss_pred CCCccceEEEeC
Q 011935 366 RPGRMDVHINMS 377 (474)
Q Consensus 366 rpGRfd~~I~~~ 377 (474)
. .-|.+-+|.
T Consensus 169 e--~AD~VTem~ 178 (196)
T 1g5t_A 169 D--LADTVSELR 178 (196)
T ss_dssp H--HCSEEEECC
T ss_pred H--hCcceeeec
Confidence 6 666665554
No 206
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.32 E-value=0.0033 Score=64.58 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=36.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEecccccChhHHHHHHHhh-cCCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIYSNSDLRRILLST-TNRSILVIED 305 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~~~~~l~~l~~~~-~~~sIl~iDe 305 (474)
+.-++|.||||+|||++++.++..+++.++. ...+..-..+....... .....++||.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~--~D~~~~~~~~~~~~~~~l~~g~~vIiD~ 316 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN--RDTLGSWQRCVSSCQAALRQGKRVVIDN 316 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC--GGGSCSHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc--cchHHHHHHHHHHHHHHHhcCCcEEEeC
Confidence 4457899999999999999999998866544 44443333333333222 2333445664
No 207
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.31 E-value=0.002 Score=63.36 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=30.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTS 281 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~ 281 (474)
+.-+++.||+|+|||+|+..+|..++..++..|.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 456789999999999999999999988777665443
No 208
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.30 E-value=0.0039 Score=58.77 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=26.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.++++||+|+|||.++.+++..++..++.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4899999999999999999988876665554
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.002 Score=57.87 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=22.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
++-+.|.||+|+|||+|++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998764
No 210
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.28 E-value=0.0016 Score=64.83 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=31.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEeccccc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSIY 283 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~~ 283 (474)
.-++|.||+|+|||+|+..||+.++..++..|--.++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvY 77 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVY 77 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTB
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccc
Confidence 4688999999999999999999999888887765543
No 211
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.27 E-value=0.0034 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-++|.|+||+|||++++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999999874
No 212
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.26 E-value=0.0013 Score=63.96 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=25.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-CCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-RFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-~~~~~~l 277 (474)
.-++|.||||+|||++++.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 458899999999999999999974 6555533
No 213
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.25 E-value=0.0012 Score=60.44 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=25.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh-CCcEEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL-RFDIYDL 277 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l-~~~~~~l 277 (474)
.-+.|.||||+|||++++.+++.+ +..++..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 347799999999999999999987 5554443
No 214
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.25 E-value=0.0023 Score=57.65 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.9
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~ 272 (474)
-+.|.||||+||||+++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4689999999999999999986654
No 215
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.21 E-value=0.0045 Score=62.25 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=38.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC----CcEEEEec-cccc---------------ChhHHHHHHHhh--cCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR----FDIYDLEL-TSIY---------------SNSDLRRILLST--TNRSILVIE 304 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~----~~~~~l~~-~~~~---------------~~~~l~~l~~~~--~~~sIl~iD 304 (474)
.-+++.||+|+||||+++++++.+. ..++.+.- ..+. ....+...+..+ .+|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 3578999999999999999998763 33333221 0100 011233344333 479999999
Q ss_pred ccc
Q 011935 305 DVD 307 (474)
Q Consensus 305 eiD 307 (474)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 216
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.20 E-value=0.014 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.19 E-value=0.017 Score=65.45 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=38.9
Q ss_pred ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHH------hCCcEEEEeccc
Q 011935 215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY------LRFDIYDLELTS 281 (474)
Q Consensus 215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~------l~~~~~~l~~~~ 281 (474)
+|.++..+.|.+.+... ...+-+.++||+|.|||+||+.+++. +...++.++++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 78888888887765421 12456889999999999999999863 344455555543
No 218
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.19 E-value=0.002 Score=58.59 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+.-+.|.||+|+|||++++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34557899999999999999999987
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.17 E-value=0.0016 Score=60.06 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.++++|.||||+|||+++..++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46899999999999999999999876 555443
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.014 Score=60.15 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 219 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
.+++.+.+.+...+..+...... ...|.-+++.||||+||||++..+|..+ |..+..+++.
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44555666665555421100000 1235668899999999999999999876 5556555543
No 221
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.13 E-value=0.025 Score=51.93 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=30.6
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCCccceecCCCCCcHHHH
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSL 262 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGtGKT~l 262 (474)
.+|+++...+.+.+.+.+.- ...+..|+...+ -..+.+++.+|+|+|||..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 46888887777777665421 111111111111 1136799999999999976
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.12 E-value=0.0033 Score=57.86 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC----CcEEEEe
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR----FDIYDLE 278 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~----~~~~~l~ 278 (474)
.+.-++|.|+||+|||++++.++..++ .+++.++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 345688999999999999999999775 4455555
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.11 E-value=0.0025 Score=58.72 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
+.-+.|.||+|+|||++++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445789999999999999999998753
No 224
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.11 E-value=0.0025 Score=63.59 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.-++|.||+|+|||+++..||..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46789999999999999999999987666554
No 225
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.09 E-value=0.0092 Score=64.68 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=33.7
Q ss_pred ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecccc
Q 011935 215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTSI 282 (474)
Q Consensus 215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~~ 282 (474)
-..+++++.|...+. . +.-.|+.||||||||+++..+...+ +..+..+..++.
T Consensus 189 ~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 189 CLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp TCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred CCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 457788887765443 1 1246899999999998665554433 556665555443
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.0035 Score=58.55 Aligned_cols=37 Identities=24% Similarity=0.141 Sum_probs=27.0
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
|++.+.-++|+||||+|||+++..+|..+ +..++.++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566678999999999999988887543 44444443
No 227
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.08 E-value=0.025 Score=51.93 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CCccceecCCCCCcHHHHHHHHH
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSLIAAMA 267 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGtGKT~la~alA 267 (474)
+..+|+++...+++.+.+.+.- ...+..|+...++ ..+.+++.+|+|+|||..+-..+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHH
Confidence 4456888877777777765410 1111112211111 13579999999999998655444
No 228
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.07 E-value=0.0086 Score=54.68 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELTS 281 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~~ 281 (474)
+.-+.|.||+|+|||++++.++..+ +.+++.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3447799999999999999999876 56666654443
No 229
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.07 E-value=0.0022 Score=62.18 Aligned_cols=31 Identities=32% Similarity=0.292 Sum_probs=25.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~ 278 (474)
.-+.|.|+||+|||++++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 357899999999999999999 6888776543
No 230
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.06 E-value=0.021 Score=59.98 Aligned_cols=75 Identities=5% Similarity=0.077 Sum_probs=48.0
Q ss_pred cEEEEecccccccccccCCCCCCCCCchhhHHhhHHhhhcCcccCCCCceEEEEecCCCC--CCCccccCCCccceEEEe
Q 011935 299 SILVIEDVDCSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE--RIDPALLRPGRMDVHINM 376 (474)
Q Consensus 299 sIl~iDeiD~l~~~~~~~~~~~~~~~~~~~~l~~LL~~idg~~~~~~~~~iiI~tTN~~~--~Ld~aLlrpGRfd~~I~~ 376 (474)
-+|+|||...++... ...+..++..+-..... -++-+|++|.++. .++..++. -+...|.|
T Consensus 299 ivlvIDE~~~ll~~~-------------~~~~~~~l~~Lar~gRa--~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-------------GKKVEELIARLAQKARA--AGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp EEEEEETHHHHHHHH-------------HHHHHHHHHHHHHHCGG--GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred EEEEEeCHHHHHhhh-------------hHHHHHHHHHHHHHhhh--CCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 389999998775410 11122333333221112 2477888888886 57777776 77888899
Q ss_pred CCCCHHHHHHHHHH
Q 011935 377 SYCTVHGFKVLASN 390 (474)
Q Consensus 377 ~~p~~~~~~~l~~~ 390 (474)
...+..+.+.++..
T Consensus 362 rv~s~~dsr~ilg~ 375 (512)
T 2ius_A 362 TVSSKIDSRTILDQ 375 (512)
T ss_dssp CCSSHHHHHHHHSS
T ss_pred EcCCHHHHHHhcCC
Confidence 99999888877653
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.04 E-value=0.021 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=17.4
Q ss_pred ccceecCCCCCcHHHHH-HHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLI-AAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la-~alA~~ 269 (474)
+.+++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 67999999999999863 334443
No 232
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.02 E-value=0.0037 Score=56.99 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
|.++|.||+|+|||+|++.|.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56899999999999999999887643
No 233
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.02 E-value=0.0048 Score=60.78 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~ 269 (474)
|++...-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666899999999999999999875
No 234
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.99 E-value=0.013 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
+.+++.+|+|+|||.++...+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999988877654
No 235
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.98 E-value=0.003 Score=58.10 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=27.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
-+.|.||+|||||++++.+|..+|+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57899999999999999999999999985
No 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.97 E-value=0.0033 Score=62.00 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=28.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLELT 280 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~~ 280 (474)
.-+++.||+|+|||+|+..+|..++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998766665543
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.94 E-value=0.0037 Score=56.78 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=22.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-+.|.||+|+||||+++.|++.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34577999999999999999999864
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.88 E-value=0.0053 Score=56.39 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=22.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999999875
No 239
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.0054 Score=57.29 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHH----hCCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LRFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~----l~~~~~~l~~ 279 (474)
|++++.-++++|+||+|||+++..+|.. .+.+++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566666899999999999999877643 2555655543
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.86 E-value=0.004 Score=56.96 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.5
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45688999999999999999998764
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.82 E-value=0.0041 Score=56.07 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.0
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+-+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999998764
No 242
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.80 E-value=0.0095 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 243
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.78 E-value=0.019 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 244
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.76 E-value=0.016 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999999754
No 245
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.75 E-value=0.0034 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||+|+||||+++.|++.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477999999999999999999987
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.73 E-value=0.018 Score=56.16 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=39.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh----CCcEEEEeccccc----------------------ChhHHHHHHHhhcCCc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELTSIY----------------------SNSDLRRILLSTTNRS 299 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~~~~----------------------~~~~l~~l~~~~~~~s 299 (474)
+..++|.||+|+|||+++..+|..+ |..+..+++.... +...++..+....++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4568899999999999999999765 4455555443211 1123444444556678
Q ss_pred EEEEe
Q 011935 300 ILVIE 304 (474)
Q Consensus 300 Il~iD 304 (474)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 247
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.72 E-value=0.018 Score=60.73 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++...-++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999765
No 248
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.65 E-value=0.0061 Score=59.89 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=26.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.++++.-+.|.||+|+|||+|++.|++.+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 456667789999999999999999999883
No 249
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.65 E-value=0.011 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 250
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.64 E-value=0.027 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 251
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.62 E-value=0.005 Score=62.70 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=27.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
.-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999999877665543
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.60 E-value=0.004 Score=60.03 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
++...-++|+||||+|||+|+..+|..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4445668999999999999999998654
No 253
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.59 E-value=0.022 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 254
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.58 E-value=0.0084 Score=58.47 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=28.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC-----cEEEE-eccccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF-----DIYDL-ELTSIY 283 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~-----~~~~l-~~~~~~ 283 (474)
+.-+.+.||+|+|||++++.|+..++. ....+ ...+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 445779999999999999999998863 23334 555554
No 255
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.56 E-value=0.0072 Score=56.90 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.3
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l 277 (474)
+-|.||||+|||++++.||+.++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45889999999999999999999887643
No 256
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.56 E-value=0.039 Score=49.85 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.3
Q ss_pred ccceecCCCCCcHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIA 264 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~ 264 (474)
+++++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 689999999999996443
No 257
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.56 E-value=0.065 Score=46.01 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.0
Q ss_pred ceecCCCCCcHHHHHHHHHHH
Q 011935 249 YLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~ 269 (474)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 258
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.55 E-value=0.025 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.55 E-value=0.0064 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.8
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+.-+.|.||+|+|||+|++.|++.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34557899999999999999999977
No 260
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.52 E-value=0.034 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999863
No 261
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.51 E-value=0.014 Score=65.49 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.1
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
+.-++|.||.|+|||++.+.+|.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45588999999999999999874
No 262
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.51 E-value=0.0085 Score=64.52 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+.-++|.|+||+|||+++++++..+ |.+++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 3458899999999999999999999 999988863
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.50 E-value=0.0081 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+...-+.|.||.|+|||+|+++|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344458899999999999999999987
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.48 E-value=0.0072 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
++-+.|.||+|+|||+|+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998765
No 265
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.46 E-value=0.017 Score=52.81 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=38.7
Q ss_pred cceecCCCCCcHH-HHHHHHHHHh--CCcEEEEecc-------cccCh----------hHHHHHHHhhcCCcEEEEeccc
Q 011935 248 GYLLYGPPGTGKS-SLIAAMANYL--RFDIYDLELT-------SIYSN----------SDLRRILLSTTNRSILVIEDVD 307 (474)
Q Consensus 248 giLL~GppGtGKT-~la~alA~~l--~~~~~~l~~~-------~~~~~----------~~l~~l~~~~~~~sIl~iDeiD 307 (474)
=+++|||.|+||| .|++++.++. +..++.+... .+.+. ..+..++....+-.+|+|||+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEaQ 101 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQ 101 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEchh
Confidence 4679999999999 8999998865 5566655422 11100 0111122223345699999998
Q ss_pred cc
Q 011935 308 CS 309 (474)
Q Consensus 308 ~l 309 (474)
-+
T Consensus 102 Ff 103 (195)
T 1w4r_A 102 FF 103 (195)
T ss_dssp GC
T ss_pred hh
Confidence 66
No 266
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.46 E-value=0.0082 Score=56.32 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=24.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC--CcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR--FDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~--~~~~~ 276 (474)
.-+.|.||||+||||+++.+++.++ .+++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3477899999999999999999986 45543
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.44 E-value=0.0077 Score=59.09 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhC--CCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 219 ELKQMILDDLDRFLRRKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 219 ~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||..+
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455666666665554321001122 2234457899999999999999999876
No 268
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.44 E-value=0.015 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
-.+++.|++|+|||+|+.++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 269
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.42 E-value=0.0072 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-+.|.||+|+|||+|+++|++.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44577999999999999999999874
No 270
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.42 E-value=0.051 Score=50.65 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCCccceecCCCCCcHHHHH
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGtGKT~la 263 (474)
...+|+++...+.+.+.+.+.- +..+..++...+ -..+.+++.+|+|+|||...
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3457999887777777664321 111111222111 11357999999999999764
No 271
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.42 E-value=0.02 Score=50.27 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.41 E-value=0.0062 Score=59.07 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
|++...-++|.||||+|||+|++.+|..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55566668899999999999999999765
No 273
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.41 E-value=0.018 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 274
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.40 E-value=0.017 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999873
No 275
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.40 E-value=0.041 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.40 E-value=0.0075 Score=56.29 Aligned_cols=29 Identities=38% Similarity=0.474 Sum_probs=23.8
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.+.+.-+.|.||+|+|||||+++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34455678999999999999999999875
No 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.37 E-value=0.003 Score=57.78 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.7
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCC
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~ 272 (474)
+.|.||+|+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999998853
No 278
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.33 E-value=0.014 Score=50.55 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.7
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 279
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.30 E-value=0.019 Score=59.20 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=27.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
++.+++.||||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3568899999999999999999876 355555544
No 280
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.29 E-value=0.038 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+++.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999888754
No 281
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.28 E-value=0.034 Score=61.72 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
+.-++|.||.|+|||++.+.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345889999999999999999864
No 282
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.27 E-value=0.0075 Score=56.49 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=27.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
.-+.+.|++|||||++++.+|..+|+++++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357799999999999999999999999875
No 283
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.27 E-value=0.028 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 284
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.26 E-value=0.025 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 285
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.034 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 286
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.21 E-value=0.036 Score=51.39 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCCccceecCCCCCcHHHHH
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGtGKT~la 263 (474)
.+..+|+++...+.+.+.+.+.- +..+..++...+ -..+.+++.+|+|+|||...
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 34457888877777777664410 111111221111 11367999999999999763
No 287
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.16 E-value=0.026 Score=63.55 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.8
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
+.-++|.||.|+|||++.+.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35588999999999999999853
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.14 E-value=0.012 Score=56.46 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=22.5
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+..-++|.||+|+||||+++++++.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34458899999999999999999876
No 289
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.09 E-value=0.016 Score=52.40 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=28.1
Q ss_pred ceecCCCCCcHHHHHHHHHHHhCCcEEEEecccc
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLRFDIYDLELTSI 282 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~~~~~~l~~~~~ 282 (474)
+|++|++|+|||++|..+|.. +.+.+.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 878777776544
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.08 E-value=0.0086 Score=53.29 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.8
Q ss_pred CccceecCCCCCcHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAM 266 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~al 266 (474)
+.-+.|.||+|+|||+|++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999963
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.022 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
.+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999986
No 292
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.07 E-value=0.0073 Score=58.86 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC---CcEEEEeccccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR---FDIYDLELTSIY 283 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~---~~~~~l~~~~~~ 283 (474)
-+.|.||+|+|||++++.++..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 467999999999999999999876 445666666665
No 293
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.05 E-value=0.026 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 294
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.03 E-value=0.043 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..++|.|++|+|||+|+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999999863
No 295
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.02 E-value=0.012 Score=62.06 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC---CcEEEEe
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLE 278 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~ 278 (474)
+.-++|.|+||+|||++++.+|.+++ .+...++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 34688999999999999999999884 4444444
No 296
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.01 E-value=0.15 Score=50.43 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCCcccccChhHHHHHHHHHH-HHH-hhHHHHHHhCCCCCccceecCCCCCcHHHHHH
Q 011935 209 STFDTLAMDPELKQMILDDLD-RFL-RRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA 264 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~-~~l-~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~ 264 (474)
.+|+++...+.+.+.+.+.-- .+. ...+.+..+-...++++++.+|+|+|||..+-
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 457777777777666654100 000 01111122111234789999999999998654
No 297
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.00 E-value=0.064 Score=52.57 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=31.5
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CCccceecCCCCCcHHHHHHHHHH
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rgiLL~GppGtGKT~la~alA~ 268 (474)
.+|+++...+.+.+.+.+.- +..+..++...++ ..+.+++.+|+|+|||..+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKG---FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 35677766666666654421 1111111111111 135789999999999987654443
No 298
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.99 E-value=0.01 Score=59.58 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhC--CCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 219 ELKQMILDDLDRFLRRKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 219 ~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 445555555555543221001122 2234458899999999999999999976
No 299
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.051 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 300
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.96 E-value=0.012 Score=55.45 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~ 273 (474)
-+-|.||+|+||||+++.|++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 36799999999999999999988754
No 301
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.95 E-value=0.011 Score=61.70 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-++|.||+|+||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3347899999999999999999876
No 302
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.93 E-value=0.033 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.93 E-value=0.027 Score=57.79 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
-+++.||+|+||||+++++++.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999999885
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.91 E-value=0.012 Score=53.60 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.0
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-+.|.||+|+|||++++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46799999999999999999876
No 305
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.89 E-value=0.04 Score=54.46 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=26.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCC-----cEEEEecccc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRF-----DIYDLELTSI 282 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~-----~~~~l~~~~~ 282 (474)
-+.|.||+|+||||+++.|+..++. .+..+.....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4679999999999999999998762 3444444443
No 306
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.89 E-value=0.041 Score=60.94 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=35.0
Q ss_pred CCCCcccccChhHHHHHHHHHHHHH--hhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHH
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFL--RRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l--~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+|+++...+...+.+...-..+. ....+...+ .....+++.||+|+|||+++..++..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468888777776665544322111 111111111 11346899999999999977776543
No 307
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.87 E-value=0.062 Score=63.02 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=23.8
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+++.-+.+.||+|+|||+|++.|.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4455688999999999999999998764
No 308
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.022 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 309
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.83 E-value=0.038 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 310
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.83 E-value=0.042 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.81 E-value=0.016 Score=58.49 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=24.0
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..++..+++.||+|+||||++++|++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34455688999999999999999998763
No 312
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.81 E-value=0.012 Score=57.95 Aligned_cols=59 Identities=14% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhCCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 220 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+++.+.+.+...+.....+ .+....+.-+++.||+|+|||+++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4555555555554322100 0111234558899999999999999999876 445554443
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.80 E-value=0.015 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||+|+|||+++..++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999875
No 314
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.78 E-value=0.02 Score=61.77 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888776654
No 315
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.73 E-value=0.011 Score=53.16 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=24.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.+|+||.||||+|||+++.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 578999999999999999999874 54433
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.73 E-value=0.026 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
.+.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999876
No 317
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.71 E-value=0.015 Score=57.13 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
|+++..-++|.|+||+|||+++..+|... +.++..++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56666679999999999999999998654 34455444
No 318
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.67 E-value=0.089 Score=49.08 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=15.1
Q ss_pred ccceecCCCCCcHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 247 rgiLL~GppGtGKT~la 263 (474)
+.+++.+|+|+|||...
T Consensus 67 ~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCEEEEECTTSCHHHHH
T ss_pred CCEEEECCCcCHHHHHH
Confidence 67999999999999864
No 319
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.67 E-value=0.19 Score=48.78 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhH-----HHHHHhCCCCCccceecCCCCCcHHHHH
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRK-----EFYRRVGKAWKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~-----~~~~~~g~~~~rgiLL~GppGtGKT~la 263 (474)
...+|+++...+.+.+.+... -+..+ ..+..+-...++.+++++|+|||||...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345788888888777766441 01111 1111221123478999999999999753
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.64 E-value=0.0078 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=15.6
Q ss_pred CccceecCCCCCcHHHHHHHHH-HHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMA-NYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA-~~l~ 271 (474)
+.-+.|.||+|+|||++++.|+ +.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3447799999999999999999 8753
No 321
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.59 E-value=0.024 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
..+++.|++|+|||+|+.++.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997643
No 322
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.54 E-value=0.035 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 323
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.52 E-value=0.034 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.7
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
-.+++.|+||+|||+|+.++.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999975
No 324
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.50 E-value=0.044 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.9
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..+++.|++|+|||+|+.++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 4589999999999999999975
No 325
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.49 E-value=0.02 Score=61.25 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=28.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC----CcEEEEecc
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR----FDIYDLELT 280 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~----~~~~~l~~~ 280 (474)
.-++|.|+||+|||+++++++..++ .+++.++..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 3478999999999999999999986 677777643
No 326
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.48 E-value=0.025 Score=55.88 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=27.2
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
.+.-+++.||+|+|||+++..||..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34568899999999999999999876 455555544
No 327
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.03 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.9
Q ss_pred CCccceecCCCCCcHHHHHHHHHHH
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~ 269 (474)
....+++.|++|+|||+|+.++.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 328
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.46 E-value=0.041 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999753
No 329
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.43 E-value=0.054 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999853
No 330
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.43 E-value=0.03 Score=57.97 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~ 279 (474)
|++++.-+++.||||+|||+++..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 55556668999999999999999988754 456665553
No 331
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.43 E-value=0.14 Score=48.21 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=30.3
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCCccceecCCCCCcHHHHH
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGtGKT~la 263 (474)
.+|+++...+.+.+.+.+.- ...+..++...+ -..+.+++.+|+|+|||...
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLG---WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh
Confidence 46888877777766654310 001111111111 12367999999999999854
No 332
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.41 E-value=0.022 Score=55.88 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-+.|.||+|+||||+++.||..+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44578999999999999999998763
No 333
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.41 E-value=0.018 Score=53.32 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.7
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYDLEL 279 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~l~~ 279 (474)
.+-|+|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 467999999999999999998 9999988764
No 334
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.028 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 335
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.32 E-value=0.065 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.9
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..++|.|++|+|||+|+.++.+
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4589999999999999999985
No 336
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.32 E-value=0.022 Score=52.83 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=24.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC---CcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR---FDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~---~~~~~l 277 (474)
-+.|.||+|+|||++++.++..++ ++++..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467899999999999999999874 555444
No 337
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.29 E-value=0.047 Score=55.26 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-++|.||||+|||+|++.||+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4458999999999999999999865
No 338
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.27 E-value=0.031 Score=57.67 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=29.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~ 279 (474)
|++++.-+++.|+||+|||+++..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666668999999999999999888653 456665554
No 339
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.26 E-value=0.027 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.26 E-value=0.022 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=21.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999874
No 341
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.24 E-value=0.027 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
No 342
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.21 E-value=0.2 Score=54.57 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCCcccccChhHHHHHHHH-HHHHHh-hHHHHHHhCCCCCccceecCCCCCcHHHHHH
Q 011935 209 STFDTLAMDPELKQMILDD-LDRFLR-RKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA 264 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~-l~~~l~-~~~~~~~~g~~~~rgiLL~GppGtGKT~la~ 264 (474)
.+|+++...+.+++.+.+. +..+.. ..+.+.. +..-.+.+++.||+|+|||+.+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHH
Confidence 4577776666666554331 000100 1122221 12335789999999999999874
No 343
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.045 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.1
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4589999999999999999986
No 344
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.18 E-value=0.035 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..++|.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 45899999999999999999874
No 345
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.16 E-value=0.11 Score=51.72 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CCccceecCCCCCcHHHHHHH
Q 011935 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSLIAA 265 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGtGKT~la~a 265 (474)
+..+|+++...+.+.+.+.+.- ...+..++...++ ..+.+++.+|+|+|||..+-.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHH
Confidence 4456888877777777665410 0111111111111 135799999999999975543
No 346
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.16 E-value=0.02 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.8
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
-+.|.||+|+||||+++.|+..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999876
No 347
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.15 E-value=0.068 Score=47.87 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.0
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
...+++.|++|+|||+|+.++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999864
No 348
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.14 E-value=0.034 Score=61.77 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888777654
No 349
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.12 E-value=0.2 Score=54.65 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.2
Q ss_pred CccceecCCCCCcHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la 263 (474)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 567999999999999877
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.12 E-value=0.021 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999998775
No 351
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.11 E-value=0.025 Score=66.30 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+++.-+-|.||+|+|||||+++|.+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 344457899999999999999998765
No 352
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.10 E-value=0.023 Score=53.29 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.|++|+|||++++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999984
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.08 E-value=0.043 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-+++.|+||+|||+|+.++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 354
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.07 E-value=0.03 Score=52.54 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=21.7
Q ss_pred cceecCCCCCcHHHHHHHHHHHh-------CCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL-------RFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l-------~~~~~~l 277 (474)
-+.|.||+|+|||++++.+++.+ +.+++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 36788999999999999999987 5665544
No 355
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.1 Score=46.10 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.6
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999984
No 356
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.05 E-value=0.01 Score=56.49 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.|++|+||||+++.|+..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3478999999999999999999983
No 357
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.00 E-value=0.014 Score=60.70 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
+.-++|.|.||+|||++++.+|..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999998753
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.00 E-value=0.026 Score=50.43 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=25.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
.-+.+.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999999876 45554444
No 359
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.00 E-value=0.049 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 379999999999999999875
No 360
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.97 E-value=0.04 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.2
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
.+++.|++|+|||+|+.++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999974
No 361
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.96 E-value=0.18 Score=46.28 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.3
Q ss_pred CccceecCCCCCcHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la 263 (474)
.+.+++.+|+|+|||...
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367899999999999754
No 362
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.96 E-value=0.2 Score=49.61 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=31.7
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCCccceecCCCCCcHHHHHHHH
Q 011935 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLIAAM 266 (474)
Q Consensus 209 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGtGKT~la~al 266 (474)
.+|+++...+.+.+.+.+. -...+..|+...+ ...+.+++.+|+|+|||..+-..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 65 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 65 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH---SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHH
Confidence 4678887777777666542 0111111222111 11367999999999999865433
No 363
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.91 E-value=0.046 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
...+++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
No 364
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.89 E-value=0.025 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-+.|.||+|+|||+|++++++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999985
No 365
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.89 E-value=0.04 Score=57.16 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999988754
No 366
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.86 E-value=0.018 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..-+.|.||.|+|||||+++|+..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34578999999999999999998664
No 367
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.82 E-value=0.033 Score=58.52 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
++.+++.|+||+||||++..||..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568899999999999999999776 566665555
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.82 E-value=0.028 Score=48.10 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.79 E-value=0.019 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||.|+|||||+++|++.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457899999999999999999865
No 370
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.78 E-value=0.04 Score=59.27 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999988877554
No 371
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.76 E-value=0.026 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 372
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.75 E-value=0.038 Score=58.03 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=23.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
..++|.|++|||||+++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999985
No 373
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.73 E-value=0.024 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 374
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.70 E-value=0.022 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-+.|.||.|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999999975
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.68 E-value=0.029 Score=56.27 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFD 273 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~ 273 (474)
..-+.|.||+|+|||||++.|++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3457899999999999999999987643
No 376
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.65 E-value=0.071 Score=58.83 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
+.-++|.||.|+|||++.+.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346789999999999999999864
No 377
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.65 E-value=0.4 Score=47.72 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCCCcccccChhHHHHHHHHHH-HHHh-hHHHHHHhCCCCCccceecCCCCCcHHHHH
Q 011935 207 HPSTFDTLAMDPELKQMILDDLD-RFLR-RKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 207 ~~~~f~~l~g~~~~k~~i~~~l~-~~l~-~~~~~~~~g~~~~rgiLL~GppGtGKT~la 263 (474)
...+|+++...+.+.+.+.+.-- .+.. ..+.+..+-...++.+++.+|+|+|||..+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 34568888887777777654100 0000 111111111112478999999999999864
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.64 E-value=0.025 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=21.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||.|+|||||+++|++.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577999999999999999998663
No 379
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.63 E-value=0.041 Score=51.20 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=24.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.-+.|.||+|+|||++++.+++.++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 34678999999999999999999987543
No 380
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.59 E-value=0.055 Score=54.02 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.|+||+|||||+.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347799999999999999999864
No 381
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.58 E-value=0.036 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 382
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.56 E-value=0.042 Score=56.74 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=28.9
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
|+.++.-+++.|+||+|||+++..+|... |.++..+++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 45555568999999999999999888654 556665543
No 383
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.55 E-value=0.019 Score=60.40 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=40.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC--cEEEEeccc-cc-----------------ChhHHHHHHHhh--cCCcEEEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTS-IY-----------------SNSDLRRILLST--TNRSILVI 303 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~-~~-----------------~~~~l~~l~~~~--~~~sIl~i 303 (474)
+.++++.||+|+||||+++++++.+.. .++.++-.. +. ..-.+..++..+ ..|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 457999999999999999999998743 344443221 10 011233444333 36888888
Q ss_pred eccc
Q 011935 304 EDVD 307 (474)
Q Consensus 304 DeiD 307 (474)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 8874
No 384
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.53 E-value=0.017 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||.|+|||||+++|++.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999998654
No 385
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.51 E-value=0.049 Score=54.22 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
|+.+..-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 55555668999999999999999998764 556655543
No 386
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.51 E-value=0.12 Score=58.97 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred CccceecCCCCCcHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMA 267 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA 267 (474)
+.-++|.||.|+|||++.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568899999999999999984
No 387
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.42 E-value=0.043 Score=56.54 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=29.4
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEeccc
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELTS 281 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~~~ 281 (474)
.++.+++.|++|+|||+++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35678899999999999999999765 66677666553
No 388
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.42 E-value=0.024 Score=54.26 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.9
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||.|+|||||+++|++.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999998764
No 389
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.39 E-value=0.08 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..++|.|+||+|||+|+.+|.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999999975
No 390
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.048 Score=60.58 Aligned_cols=33 Identities=33% Similarity=0.401 Sum_probs=23.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHh----CCcEEEEecc
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL----RFDIYDLELT 280 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l----~~~~~~l~~~ 280 (474)
-+++.||||||||+++..+...+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999999877665433 4455544433
No 391
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.34 E-value=0.042 Score=57.54 Aligned_cols=38 Identities=13% Similarity=-0.031 Sum_probs=28.6
Q ss_pred CCCCCccceecCCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011935 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----RFDIYDLEL 279 (474)
Q Consensus 242 g~~~~rgiLL~GppGtGKT~la~alA~~l----~~~~~~l~~ 279 (474)
|+++..-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45555568999999999999999998765 445665543
No 392
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.33 E-value=0.059 Score=53.81 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=25.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~ 278 (474)
.-+.|.|+||+|||+++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 457899999999999999999876 44444443
No 393
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.33 E-value=0.024 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.632 Sum_probs=22.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..-+.|.||.|+|||||+++|++.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34577999999999999999998764
No 394
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.33 E-value=0.03 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.4
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998763
No 395
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.33 E-value=0.024 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=21.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-+.|.||.|+|||||+++|++.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999865
No 396
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.30 E-value=0.036 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
-+.|.|+||+|||+|+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 397
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.27 E-value=0.24 Score=49.06 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CCccceecCCCCCcHHHHH
Q 011935 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 206 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGtGKT~la 263 (474)
....+|+++...+.+.+.+...- ...+..++...++ ..+.+++.+|+|+|||..+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 33456888877777777665421 1111111111111 1357999999999999763
No 398
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.27 E-value=0.039 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|+||+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 399
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.20 E-value=0.041 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 400
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.19 E-value=0.027 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-+.|.||.|+|||||+++|++.+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4458899999999999999999865
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.18 E-value=0.039 Score=47.94 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=19.7
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
-.+++.|+||+|||+|+.++.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999999975
No 402
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.18 E-value=0.033 Score=53.49 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||.|+|||||++.|++.+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999863
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.18 E-value=0.025 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..-+.|.||.|+|||||+++|++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34578999999999999999998763
No 404
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.17 E-value=0.023 Score=60.40 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..+.|.||+|+||||++++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4578999999999999999999985
No 405
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.16 E-value=0.042 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
...+++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 406
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.15 E-value=0.032 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.2
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
-++|.|+||+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 407
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.14 E-value=0.025 Score=53.99 Aligned_cols=25 Identities=40% Similarity=0.781 Sum_probs=21.6
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||.|+|||||+++|++.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3477999999999999999998653
No 408
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.12 E-value=0.029 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-+.|.||.|+|||||+++|+..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34477999999999999999998764
No 409
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.11 E-value=0.11 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-+++.|++|+|||+|++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999988764
No 410
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.09 E-value=0.029 Score=54.05 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.3
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..-+.|.||.|+|||||++.|++.+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998663
No 411
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.08 E-value=0.03 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
..-+.|.||.|+|||||+++|++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 344779999999999999999985
No 412
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.04 E-value=0.026 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998653
No 413
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.04 E-value=0.47 Score=47.35 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---CCccceecCCCCCcHHHHHH
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKRGYLLYGPPGTGKSSLIA 264 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~rgiLL~GppGtGKT~la~ 264 (474)
..+|+++...+.+.+.+...- +..+..++...++ ..+.+++.+|+|+|||...-
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH
Confidence 347899887787777765420 1111112221111 13679999999999997554
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.01 E-value=0.029 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|||||||.++||...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 347799999999999999999865
No 415
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.01 E-value=0.092 Score=53.88 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=26.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+..+++.||+|+|||+++..+|..+ +..+..+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4567888999999999999999876 445555544
No 416
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.00 E-value=0.038 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999999853
No 417
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.98 E-value=0.032 Score=55.97 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.5
Q ss_pred CCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 245 WKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 245 ~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.+..++|.||+|+||||++++|++.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345789999999999999999998764
No 418
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.97 E-value=0.036 Score=55.72 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|||||||.++||+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 346799999999999999999865
No 419
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.90 E-value=0.037 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|+|||||.++||+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 346799999999999999999865
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.90 E-value=0.032 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=21.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-+.|.||.|+|||||+++|++.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3447899999999999999999865
No 421
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.89 E-value=0.029 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||.|+|||||+++|++.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 347899999999999999999865
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.89 E-value=0.047 Score=47.48 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.1
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-.+++||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998655
No 423
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.88 E-value=0.037 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|+|||||.++||...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999999865
No 424
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.88 E-value=0.037 Score=55.93 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|||||||.++||...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 346799999999999999999865
No 425
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.87 E-value=0.029 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||.|+|||||++.|+..+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3477999999999999999998764
No 426
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.86 E-value=0.024 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.6
Q ss_pred cceecCCCCCcHHHHHHHHHHHhC
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~ 271 (474)
.+.|.||+|+|||+|++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 567999999999999999998874
No 427
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.86 E-value=0.046 Score=47.25 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.7
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999963
No 428
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.85 E-value=0.12 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
-+.|.|+||+|||+|..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999863
No 429
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.85 E-value=0.038 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|||||||.++||+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 347799999999999999999865
No 430
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.85 E-value=0.04 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-++|.|++|+|||+|+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 431
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.84 E-value=0.03 Score=53.28 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=22.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
.-+.|.||.|+|||||+++|++.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34779999999999999999987643
No 432
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.80 E-value=0.42 Score=49.18 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHh-----hHHHHHHhCCCCCccceecCCCCCcHHHHH
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLR-----RKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~-----~~~~~~~~g~~~~rgiLL~GppGtGKT~la 263 (474)
..+|+++...+.+.+.+.+. -+. ....+..+-...++.+|+.||+|+|||...
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 34788888888777766431 001 111111111123478999999999999763
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.78 E-value=0.034 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.5
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-+.|.||.|+|||||+++|++.+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3447799999999999999999765
No 434
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.77 E-value=0.047 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||+|+|||++++.++..++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3477899999999999999998773
No 435
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.76 E-value=0.051 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.4
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
...+++.|++|+|||+|+.++.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999976
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.74 E-value=0.052 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRF 272 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~ 272 (474)
.-+.|.|++|+|||++++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678899999999999999987654
No 437
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.64 E-value=0.028 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.5
Q ss_pred ceecCCCCCcHHHHHHHHHHHhC
Q 011935 249 YLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l~ 271 (474)
+.|.||+|+|||+|+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36789999999999999999874
No 438
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.60 E-value=0.32 Score=48.55 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=31.3
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCCccceecCCCCCcHHHHHH
Q 011935 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLIA 264 (474)
Q Consensus 208 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rgiLL~GppGtGKT~la~ 264 (474)
..+|+++...+.+.+.+.+. -...+..++...+ -..+.+++.+|+|+|||..+-
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHc---CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 35688888777777766441 0111111111110 113569999999999998643
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.60 E-value=0.041 Score=58.06 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCCCccceecCCCCCcHHHHHHH--HHHH
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAA--MANY 269 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~a--lA~~ 269 (474)
++....++|.||+|+|||+|++. ++..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45566799999999999999999 4443
No 440
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.59 E-value=0.033 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-+.|.||.|+|||||+++|++.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447799999999999999999875
No 441
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.57 E-value=0.033 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|+|||||.+.||+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 347799999999999999999865
No 442
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.57 E-value=0.033 Score=55.21 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=39.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCC--cEEEEecccc------------c--ChhHHHHHHHhh--cCCcEEEEeccc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRF--DIYDLELTSI------------Y--SNSDLRRILLST--TNRSILVIEDVD 307 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~--~~~~l~~~~~------------~--~~~~l~~l~~~~--~~~sIl~iDeiD 307 (474)
+..+++.||+|+|||+++++|++.+.. ..+.++-... . .....+..+..+ .+|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 457899999999999999999998742 2333332110 0 112233333332 468888888864
No 443
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.57 E-value=0.049 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred cceecCCCCCcHHHHHHHHHHHh
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l 270 (474)
-+.|.|++|+|||+.++.+++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999887
No 444
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.57 E-value=0.086 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.8
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.++|.|+||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999864
No 445
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.56 E-value=0.057 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred CccceecCCCCCcHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~ 268 (474)
...+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999975
No 446
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.55 E-value=0.034 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=21.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
.-+.|.||.|+|||||+++|++.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3477999999999999999998653
No 447
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.55 E-value=0.039 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|+|||||.++||+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 347799999999999999999865
No 448
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.51 E-value=0.039 Score=52.97 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=22.1
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhC
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..-+.|.||.|+|||||+++|++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34477999999999999999998653
No 449
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.50 E-value=0.22 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.7
Q ss_pred cceecCCCCCcHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~ 268 (474)
-+.+.|++|+|||+|+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 678999999999999999987
No 450
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.49 E-value=0.096 Score=49.20 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=25.3
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh--CCcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL--RFDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l--~~~~~~l~ 278 (474)
..+++.|++|+|||+++..+|..+ +..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 346789999999999999999876 55555554
No 451
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.34 E-value=0.068 Score=53.07 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||||+|||||+++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999865
No 452
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.34 E-value=0.051 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-+++.|+||+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 453
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.31 E-value=0.057 Score=47.06 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.7
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..+++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 454
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.26 E-value=0.053 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 455
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.21 E-value=0.045 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=21.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||.|+|||||+++|++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999865
No 456
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.21 E-value=0.065 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 457
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.21 E-value=0.065 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.19 E-value=0.13 Score=51.76 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
..++++.||+|+|||++++.++..+ +..++.+|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999999998654 5566666644
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.17 E-value=0.059 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
..+++.|++|+|||+++.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5688999999999999999998864
No 460
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.11 E-value=0.069 Score=52.52 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.+|++|.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 578999999999999999999875 54443
No 461
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.11 E-value=0.065 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 462
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.09 E-value=0.048 Score=48.00 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
-++|.|+||+|||+|+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 463
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.08 E-value=0.086 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=27.4
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLELT 280 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~~ 280 (474)
+.-+++.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4457789999999999999999876 5566655544
No 464
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.03 E-value=0.087 Score=52.55 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.3
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
-+.|.||+|+|||+|++.|++....+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 4789999999999999999999876543
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.01 E-value=0.033 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.1
Q ss_pred ccceecCCCCCcHHHHHHHHHHHh
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l 270 (474)
.-+.|.||+|+|||||.++||+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999999865
No 466
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.01 E-value=0.071 Score=46.61 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 467
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.01 E-value=0.072 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999998864
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.01 E-value=0.11 Score=47.59 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=23.9
Q ss_pred ceecCCCCCcHHHHHHHHHHHh--CCcEEEE
Q 011935 249 YLLYGPPGTGKSSLIAAMANYL--RFDIYDL 277 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~l--~~~~~~l 277 (474)
|.|-|+.|+||||.++.+++.+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5688999999999999999988 4455543
No 469
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.94 E-value=0.055 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
--+++.|+||+|||+|+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 470
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.91 E-value=0.075 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.6
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 471
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.88 E-value=0.062 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.2
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
.-+++.|+||+|||+|+.++.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 472
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.83 E-value=0.051 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.6
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||+|||||||.++||..+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3457899999999999999999754
No 473
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.83 E-value=0.067 Score=55.52 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCCCccceecCCCCCcHHHHHHHHHHHh
Q 011935 243 KAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 243 ~~~~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+....-+.|.||.|+|||||++.|++.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444558899999999999999999865
No 474
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.82 E-value=0.077 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
...+++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 475
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.81 E-value=0.05 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
...+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999753
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.77 E-value=0.11 Score=53.41 Aligned_cols=28 Identities=39% Similarity=0.622 Sum_probs=24.0
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhCCcE
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLRFDI 274 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~~~~ 274 (474)
.-+.|.||+|+|||+|++.||+....+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 3478999999999999999999886553
No 477
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.75 E-value=0.057 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.3
Q ss_pred ccceecCCCCCcHHHHHHH-HHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAA-MANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~a-lA~~ 269 (474)
-.+++.|++|+|||+|+.+ +.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999 5444
No 478
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.75 E-value=0.077 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.9
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 479
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.74 E-value=0.074 Score=56.41 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=25.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHHhC---CcEEEEe
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANYLR---FDIYDLE 278 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~l~---~~~~~l~ 278 (474)
.-++|.|+||+|||++++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4578999999999999999999875 3555554
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.71 E-value=0.08 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
-.+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 481
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.71 E-value=0.091 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.8
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
-+.|.||+|+|||||+++|++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999999984
No 482
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.69 E-value=0.046 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
+.-+.|.||.|+|||+|+++|++.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3447899999999999999999865
No 483
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.63 E-value=0.061 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred cceecCCCCCcHHHHHHHHHHH
Q 011935 248 GYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~ 269 (474)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999863
No 484
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.61 E-value=0.082 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 485
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.54 E-value=0.15 Score=49.55 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL---RFDIYDLEL 279 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l---~~~~~~l~~ 279 (474)
+..+.+.||+|+|||+++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4457788999999999999999865 445554443
No 486
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.53 E-value=1.1 Score=41.87 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=19.7
Q ss_pred cceecCCCCCcHHHHHHHHHH-Hh--CCcEEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMAN-YL--RFDIYDL 277 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~-~l--~~~~~~l 277 (474)
-+++|||.|+|||+.+-..+. +. |..++.+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~ 53 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI 53 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 367899999999976555543 32 4445444
No 487
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.49 E-value=0.037 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.2
Q ss_pred CccceecCCCCCcHHHHHHHHHHH
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~ 269 (474)
..-+.|.|++|+|||+|++++++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 344789999999999999998753
No 488
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.45 E-value=0.075 Score=46.58 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.9
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..+++.|++|+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4589999999999999999985
No 489
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.44 E-value=0.067 Score=52.55 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=23.7
Q ss_pred CccceecCCCCCcHHHHHHHHHHHhCCcEE
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYLRFDIY 275 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l~~~~~ 275 (474)
.+|+||.||||+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57899999999999999988765 455544
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.39 E-value=0.079 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.9
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+++.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3567888999999999999999875
No 491
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.38 E-value=0.03 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred ccceecCCCCCcHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMAN 268 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~ 268 (474)
..+++.|++|+|||+|+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999874
No 492
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.37 E-value=0.04 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.3
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhC
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLR 271 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~ 271 (474)
++..-+.|.||+|+|||||++.|+..+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3445588999999999999999998663
No 493
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.37 E-value=0.063 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.5
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+.|.|+||+|||+|+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 494
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.36 E-value=0.076 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.30 E-value=0.084 Score=49.08 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=22.6
Q ss_pred cceecCCCCCcHHHHHHHHHHHhCCcEEE
Q 011935 248 GYLLYGPPGTGKSSLIAAMANYLRFDIYD 276 (474)
Q Consensus 248 giLL~GppGtGKT~la~alA~~l~~~~~~ 276 (474)
-+.|.||.|+||||+++.|++. +..+..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 3679999999999999999987 444443
No 496
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.30 E-value=0.13 Score=47.22 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=29.3
Q ss_pred CCCccceecCCCCCcHHHHHHHHHHHhCCc-EEEEeccc
Q 011935 244 AWKRGYLLYGPPGTGKSSLIAAMANYLRFD-IYDLELTS 281 (474)
Q Consensus 244 ~~~rgiLL~GppGtGKT~la~alA~~l~~~-~~~l~~~~ 281 (474)
.|+.-|++.|.||+||++++..+.+.++.. +..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 456678999999999999999999878653 44445544
No 497
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.29 E-value=0.081 Score=54.28 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.5
Q ss_pred ceecCCCCCcHHHHHHHHHHH
Q 011935 249 YLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 249 iLL~GppGtGKT~la~alA~~ 269 (474)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999875
No 498
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.24 E-value=0.062 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999764
No 499
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.20 E-value=0.056 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.8
Q ss_pred ccceecCCCCCcHHHHHHHHHHH
Q 011935 247 RGYLLYGPPGTGKSSLIAAMANY 269 (474)
Q Consensus 247 rgiLL~GppGtGKT~la~alA~~ 269 (474)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998753
No 500
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.20 E-value=0.087 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.5
Q ss_pred CccceecCCCCCcHHHHHHHHHHHh
Q 011935 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (474)
Q Consensus 246 ~rgiLL~GppGtGKT~la~alA~~l 270 (474)
..-+.|.||+|+|||||+++|+...
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3447799999999999999999865
Done!