BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011936
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
G +PLH+AA+ G++++VK LL+ D+ A+D +GR PLH+AA G ++V+ L A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA--G 58
Query: 131 AAYSTTIWN-ETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIE 189
A + N T LHL ++ E +K L+ D +NAKD G + LHLA + +E
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLE 115
Query: 190 TINYLL 195
+ LL
Sbjct: 116 VVKLLL 121
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL K +L + + D G +PLH+AA+ G++++VK LL+ D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKF 157
A+D +GR PLH+AA G ++V+ L A A + N T LHL ++ E +K
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 158 LVS 160
L+
Sbjct: 120 LLE 122
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL K +L + + D G +PLH+AA+ G++++VK LL+ D+
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
A+D +GR PLH+AA G ++V+ L A +
Sbjct: 96 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 104 DGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKFLVSIM 162
+GR PLH+AA G ++V+ L A A + N T LHL ++ E +K L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 163 NDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRD 222
D +NAKD G + LHLA + +E + LL+ +VNA + +G T L + A++
Sbjct: 59 AD---VNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGH- 113
Query: 223 IKDLDIADSLRGAGAF 238
L++ L AGA+
Sbjct: 114 ---LEVVKLLLEAGAY 126
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 32 VANRHHETPLHVAALRGHLHFAKEILR-RTPVLAGELDSRGSSPLHMAAQKGYVDIVKEL 90
V+N ETPLH+AA GH AK +L+ + V A D + +PLH AA+ G+ ++VK L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLL 99
Query: 91 LQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHN 150
L+ N + LA G PLH+AA +G ++ ++ L A T T LH+ K+
Sbjct: 100 LENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYG 157
Query: 151 QFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV-NTRVEVNALNTHG 209
+ + L+ P NA G++ LH+AV ++ + LL A N G
Sbjct: 158 KVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--G 212
Query: 210 YTALDILAQSRRDIKDLDIADS-LRGAGAFKAIEIQ 244
YT L I A+ + +++A S L+ G+ A +Q
Sbjct: 213 YTPLHIAAKQNQ----VEVARSLLQYGGSANAESVQ 244
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 7/177 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA + + A+ +L+ E +G +PLH+AAQ+G+ ++V LL +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
L G PLH+ A +G + V L + +TT T LH+ + + +KFL
Sbjct: 273 LGNK-SGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 159 VSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215
+ D +NAK G S LH A + + LL N N +++ G T L I
Sbjct: 331 LQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAI 383
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDS---RGSSPLHMAAQKGYVDIVKELLQVNP 95
TPLHVA +L K +L R G S G +PLH+AA++ V++ + LLQ
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPR----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG- 235
Query: 96 DMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEAL 155
A V G PLH+AA +G + +V L ++ T LHL +
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAE-MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 156 KFLV--SIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTAL 213
L+ +M D A G + LH+A I+ + +LL + + +VNA GY+ L
Sbjct: 295 DVLIKHGVMVD-----ATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPL 348
Query: 214 DILAQ 218
AQ
Sbjct: 349 HQAAQ 353
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
+ N+ TPLH+ A GH+ A ++L + V+ G +PLH+A+ G + +VK LL
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVA-DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
Q D+ A+ G +PLH AA +G ++ L +
Sbjct: 332 QHQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 73 SPLHMAAQKGYVDIVKELLQ--VNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
+PLH+A+ G++ IVK LLQ +P++ +V PLH+AA G +V L + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNK-A 71
Query: 131 AAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIET 190
+ ++T LH + +K L+ +P N G + LH+A + +ET
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP---NLATTAGHTPLHIAAREGHVET 128
Query: 191 INYLLVNTRVEVNALNTHGYTALDILAQ 218
+ LL + + G+T L + A+
Sbjct: 129 VLALLEKEASQA-CMTKKGFTPLHVAAK 155
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSR---GSSPLHMAAQKGYVDIVKELLQ--V 93
TPLHVA+ G++ K +L+ +++++ G SPLH AAQ+G+ DIV LL+
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 94 NPDMCLARDVDGRNPLHVAAMKGRIQV 120
+P+ DG PL +A G I V
Sbjct: 369 SPNEV---SSDGTTPLAIAKRLGYISV 392
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D VK+LL+ D+ A D DG+ PLH+AA G +V V+L ++ +
Sbjct: 11 AAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDS 68
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
+T LHL ++ E +K L+S DP NAKD G + LHLA + E + LL++
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 198 TRVEVNALNTHGYTALDI 215
+ N ++ G T LD+
Sbjct: 125 QGADPNTSDSDGRTPLDL 142
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GH K +L + + DS G +PLH+AA+ G+ ++VK LL D
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
A+D DG+ PLH+AA G +V V+L ++ ++ T L L +H E +K L
Sbjct: 98 -AKDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
DS G +PLH+AA+ G+ ++VK LL D A+D DG+ PLH+AA G +V V+L +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEV-VKLLLS 91
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
+ + +T LHL ++ E +K L+S DP N D G + L LA
Sbjct: 92 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLAREHGN 148
Query: 188 IETINYL 194
E + L
Sbjct: 149 EEVVKLL 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH AA GH K ++ + + + DS G +PLH AA++G+ +IVK L+ D+
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGADVN 97
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
A+D DGR PLH AA +G ++ V+L ++ ++ T L L +H E +K L
Sbjct: 98 -AKDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D VK+L++ D+ A D DGR PLH AA +G ++ V+L ++ +
Sbjct: 11 AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNAKDS 68
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LH K E +K L+S D +NAKD G + LH A + E + LL++
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEIVK-LLIS 124
Query: 198 TRVEVNALNTHGYTALDI 215
+VN ++ G T LD+
Sbjct: 125 KGADVNTSDSDGRTPLDL 142
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
DS G +PLH AA++G+ +IVK L+ D+ A+D DGR PLH AA +G ++ V+L +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEI-VKLLIS 91
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLA 182
+ + T LH K E +K L+S D +N D G + L LA
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDSDGRTPLDLA 143
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRA 127
A+D DG PLH+AA +G ++++ L +A
Sbjct: 96 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G +PLH+AA++G+++IV+ LL+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+ T LHL + E ++ L+ D +NA+D +G + LA+
Sbjct: 91 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A+D DG PLH+AA +G ++++ L +A +
Sbjct: 9 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDK 66
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL + E ++ L+ D +NAKD G + LHLA + +E + LL
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLL-K 122
Query: 198 TRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAG 236
+VNA + G T D+ D + DIA+ L+ A
Sbjct: 123 AGADVNAQDKFGKTPFDLAI----DNGNEDIAEVLQKAA 157
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 70 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 99 LARDVDGRNPLHVAAMKG 116
A+D G+ P +A G
Sbjct: 129 -AQDKFGKTPFDLAIDNG 145
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRA 127
A+D DG PLH+AA +G ++++ L +A
Sbjct: 96 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G +PLH+AA++G+++IV+ LL+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185
+ T LHL + E ++ L+ D +NA+D +G + LA+ +
Sbjct: 91 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAIRE 144
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A+D DG PLH+AA +G ++++ L +A +
Sbjct: 9 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDK 66
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL + E ++ L+ D +NAKD G + LHLA + +E + LL
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLL-K 122
Query: 198 TRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAG 236
+VNA + G T D+ + + DIA+ L+ A
Sbjct: 123 AGADVNAQDKFGKTPFDLAIREGHE----DIAEVLQKAA 157
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 70 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 99 LARDVDGRNPLHVAAMKG 116
A+D G+ P +A +G
Sbjct: 129 -AQDKFGKTPFDLAIREG 145
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRA 127
A+D DG PLH+AA +G ++++ L +A
Sbjct: 108 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 39/148 (26%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G +PLH+AA++G+++IV+ LL+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
+NAKD G + LHLA +
Sbjct: 103 GA-------------------------------------DVNAKDKDGYTPLHLAAREGH 125
Query: 188 IETINYLLVNTRVEVNALNTHGYTALDI 215
+E + LL +VNA + G TA DI
Sbjct: 126 LEIVEVLL-KAGADVNAQDKFGKTAFDI 152
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 82 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 141 TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRV 200
T LHL + E ++ L+ D +NAKD G + LHLA + +E + LL
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 104
Query: 201 EVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGA 237
+VNA + GYT L + A+ L+I + L AGA
Sbjct: 105 DVNAKDKDGYTPLHLAAREGH----LEIVEVLLKAGA 137
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLD 227
+NAKD G + LHLA + +E + LL +VNA + GYT L + A+ L+
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGH----LE 94
Query: 228 IADSLRGAGA 237
I + L AGA
Sbjct: 95 IVEVLLKAGA 104
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL K +L + + D G +PLH+AA+ G++++VK LL+ D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
A+D +GR PLH+AA G ++V+ L A +
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
G +PLH+AA+ G++++VK LL+ D+ A+D +GR PLH+AA G ++V V+L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEV-VKLLLEAGA 59
Query: 131 AAYSTTIWNETVLHLCVKHNQFEALKFLVS 160
+ T LHL ++ E +K L+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 104 DGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMN 163
+GR PLH+AA G ++V V+L + T LHL ++ E +K L+
Sbjct: 1 NGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 164 DPDFLNAKDDYGMSILHLAVADKQIETINYLL 195
D +NAKD G + LHLA + +E + LL
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH AA GH K +L + DS G +PLH AA+ G+ +IVK LL D
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
A+D DGR PLH AA G ++ V+L ++ ++ T L L +H E +K L
Sbjct: 98 -AKDSDGRTPLHYAAENGHKEI-VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D VK+LL+ D A D DGR PLH AA G ++ V+L ++ +
Sbjct: 11 AAENGNKDRVKDLLENGADPN-ASDSDGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDS 68
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LH ++ E +K L+S DP NAKD G + LH A + E + LL++
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVK-LLLS 124
Query: 198 TRVEVNALNTHGYTALDI 215
+ N ++ G T LD+
Sbjct: 125 KGADPNTSDSDGRTPLDL 142
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
DS G +PLH AA+ G+ +IVK LL D A+D DGR PLH AA G ++ V+L +
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEI-VKLLLS 91
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
+ + T LH ++ E +K L+S DP N D G + L LA
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGRTPLDLAREHGN 148
Query: 188 IETINYL 194
E + L
Sbjct: 149 EEIVKLL 155
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH AA GH K ++ + + + DS G +PLH AA+ G+ ++VK L+ D+
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
A+D DGR PLH AA G +V V+L ++ ++ T L L +H E +K L
Sbjct: 98 -AKDSDGRTPLHHAAENGHKEV-VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D VK+L++ D+ A D DGR PLH AA G +V V+L ++ +
Sbjct: 11 AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEV-VKLLISKGADVNAKDS 68
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LH ++ E +K L+S D +NAKD G + LH A + E + LL++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVV-KLLIS 124
Query: 198 TRVEVNALNTHGYTALDI 215
+VN ++ G T LD+
Sbjct: 125 KGADVNTSDSDGRTPLDL 142
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
DS G +PLH AA+ G+ ++VK L+ D+ A+D DGR PLH AA G +V V+L +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEV-VKLLIS 91
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
+ + T LH ++ E +K L+S D +N D G + L LA
Sbjct: 92 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGN 148
Query: 188 IETINYL 194
E + L
Sbjct: 149 EEVVKLL 155
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDM 97
+TPLH+AA GHL E+L + LD GS+PLH+AA++G+++IV+ LL+ D+
Sbjct: 48 DTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 98 CLARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA G ++++ L +
Sbjct: 107 N-ADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ G +PLH+AA+ G+++IV+ LL+ D+ A D G PLH+AA +G ++++ L +
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
TI + T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 103 GADVNADDTIGS-TPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA G +++ VE+ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEI-VEVLLKNGADVNALDF 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL K E ++ L+ D +NA D G + LHLA +E + LL
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLL-K 134
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 135 YGADVNAQDKFGKTAFDI 152
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL + +L+ + + D+ GS+PLH+AA G+++IV+ LL+ D+
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQ 218
+NA+D YG + LHLA +E + LL N +VNAL+ G T L + A+
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNG-ADVNALDFSGSTPLHLAAK 89
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D+ GS+PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D +G PLH+AA +G ++++ L +
Sbjct: 108 -AKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR-ARPFAAYSTT 136
AA+ G D V+ L+ D+ A DV G PLH+AA G ++++ L + AY T
Sbjct: 21 AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 137 IWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196
T LHL E ++ L+ N D +NAKDD G++ LHLA +E + LL
Sbjct: 80 --GSTPLHLAAHFGHLEIVEVLLK--NGAD-VNAKDDNGITPLHLAANRGHLEIVEVLL- 133
Query: 197 NTRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA +G+++IV+ LL+ D+
Sbjct: 82 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISINNGN-EDLAEILQ 166
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D+ G++PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D +G PLH+AA G ++++ L +
Sbjct: 108 -AKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA G +++ VE+ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEI-VEVLLKYGADVNAWDN 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
+ T LHL + E ++ L+ D +NAKD G + LHLA D +E + LL
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLL-K 134
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 135 YGADVNAQDKFGKTAFDI 152
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL + +L+ + + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L R +D+ G++PLH+AA G+++IV+ LL+ D+
Sbjct: 37 TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G PL++AA G ++++ L +
Sbjct: 96 -AKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 43/178 (24%)
Query: 56 ILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115
IL A D G +PLHMAA G+++IV+ LL+ D+ A D +G PLH+AA
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASL 78
Query: 116 GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYG 175
G ++++ L + Y + NAKD G
Sbjct: 79 GHLEIVEVLLK------YGADV-------------------------------NAKDATG 101
Query: 176 MSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLR 233
++ L+LA +E + LL + +VNA + G TA DI DI + D+A+ L+
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHG-ADVNAQDKFGKTAFDI----SIDIGNEDLAEILQ 154
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D+ G +PL++AA G+++IV+ LL+ D+
Sbjct: 70 TPLHLAASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 99 LARDVDGRNPLHVA 112
A+D G+ ++
Sbjct: 129 -AQDKFGKTAFDIS 141
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 39/148 (26%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D +GS+PLH+AA G+ +IV+ LL+ D+ ARD DG PLH+AA G ++++ L +
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLK- 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
Y + NA+D YG++ LHLA
Sbjct: 102 -----YGADV-------------------------------NAQDAYGLTPLHLAADRGH 125
Query: 188 IETINYLLVNTRVEVNALNTHGYTALDI 215
+E + LL + +VNA + G TA DI
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDI 152
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GH E+L + D+ G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G PLH+AA +G ++++ L +
Sbjct: 108 -AQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D+ G +PLH+AA +G+++IV+ LL+ D+
Sbjct: 82 TPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQS 219
+NA DD G + LHLA E + LL + +VNA +T G+T L + A +
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG-ADVNARDTDGWTPLHLAADN 90
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + DS G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA +G ++++ L +
Sbjct: 108 -ASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ ARD G PLH+AA G +++ VE+ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEI-VEVLLKNGADVNAKDS 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL + E ++ L+ N D +NA D +G + LHLA +E + LL N
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLK--NGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 136 G-ADVNAQDKFGKTAFDI 152
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL E+L + DS G +PLH+AA++G+++IV+ LL+ D+
Sbjct: 82 TPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
++ H TPLH+AA RGHL E+L + D G + ++ G D+ + L +
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 93 VN 94
+N
Sbjct: 168 LN 169
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + +D G +PL +AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D++G PLH+AAM G ++++ L +
Sbjct: 108 -ANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ G +PLH+AA G+++IV+ LL+ D+ A D G PL +AA+ G +++ VE+
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEI-VEVLLK 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+ + T LHL E ++ L+ N D +NA+D +G + +++
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK--NGAD-VNAQDKFGKTAFDISI 154
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA G +++ VE+ +
Sbjct: 21 AARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEI-VEVLLKNGADVNAVDH 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T L L E ++ L+ N D +NA D G + LHLA +E + LL N
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLK--NGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 136 G-ADVNAQDKFGKTAFDI 152
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPL +AAL GHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 82 TPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D DG PLH+AA G ++++ L +
Sbjct: 108 -AYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR- 126
D+ G +PLH+AA G+++IV+ LL+ D+ A D+ G PLH+AA G ++++ L +
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 127 ARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
AY T LHL K+ E ++ L+ D +NA+D +G + +++
Sbjct: 103 GADVNAYDND--GHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D DG PLH+AA G +++ VE+ ++ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEI-VEVLLKNGADVNASDL 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL E ++ L+ D +NA D+ G + LHLA +E + LL +
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 136 G-ADVNAQDKFGKTAFDI 152
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D+ G +PLH+AA+ G+++IV+ LL+ D+
Sbjct: 82 TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ G +PLH+AA G+++IV+ LL+ D+ A D+ G PLH+AA+ G +++ VE+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEI-VEVLLK 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+ W +T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + +D GS+PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA+ G ++++ L +
Sbjct: 108 -AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA G +++ VE+ + I
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEI-VEVLLKHGADVNAIDI 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL E ++ L+ D +NA D +G + LHLA +E + LL +
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 136 G-ADVNAQDKFGKTAFDI 152
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AAL GHL E+L + +D+ G +PLH+AA G+++IV+ LL+ D+
Sbjct: 82 TPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
+TPLH+AA+ GHL + +L+ + + D G + ++ G D+ + L ++N
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA+ GHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D+ G PLH+AA +G ++++ L +
Sbjct: 108 -AFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
+D+ G +PLH+AA G+++IV+ LL+ D+ A DV G PLH+AAM G ++++ L +
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 127 -ARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
A+ T T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 102 YGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA+ GHL E+L + D GS+PLH+AA +G+++IV+ LL+ D+
Sbjct: 82 TPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGR 117
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA+ G +++ VE+ + +
Sbjct: 21 AARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEI-VEVLLKHGADVDAADV 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
+ T LHL E ++ L+ D +NA D G + LHLA + +E + LL
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEIVEVLL-K 134
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 135 YGADVNAQDKFGKTAFDI 152
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 161 IMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQS 219
I N D +NA D+ G++ LHLA +E + LL + +V+A + +G+T L + A +
Sbjct: 34 IANGAD-VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG-ADVDAADVYGFTPLHLAAMT 90
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDM 97
+TPLH+AA++GHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 48 KTPLHLAAIKGHLEIV-EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV 106
Query: 98 CLARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA G ++++ L +
Sbjct: 107 N-ATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G+ PLH+AA+KG +++ VE+ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEI-VEVLLKHGADVNAADK 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
+T LHL + E ++ L+ N D +NA D YG + LHLA +E + LL
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLK--NGAD-VNATDTYGFTPLHLAADAGHLEIVEVLL-K 134
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 135 YGADVNAQDKFGKTAFDI 152
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G +PLH+AA KG+++IV+ LL+ D+ A D G PLH+AA+ G +++ VE+
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEI-VEVLLK 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+T + T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
A++ +TPLH+AAL GHL E+L + D+ G +PLH+AA G+++IV+ LL+
Sbjct: 76 ADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 93 VNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
D+ A+D G+ ++ G + L E+ +
Sbjct: 135 YGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 166
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL + +L+ + + DS G +PLH+AA +G++++V+ LL+ D+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D +G PLH+AA G ++++ L +
Sbjct: 108 -ANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 39/148 (26%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G +PLH+AA G+++IV+ LL+ D+ A D G PLH+AA +G ++V+ L +
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLK- 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
N D +NA D G + LHLA
Sbjct: 102 -----------------------------------NGAD-VNANDHNGFTPLHLAANIGH 125
Query: 188 IETINYLLVNTRVEVNALNTHGYTALDI 215
+E + LL + +VNA + G TA DI
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDI 152
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 82 TPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 141 TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRV 200
T LHL E ++ L+ N D +NA D G++ LHLA +E + LL N
Sbjct: 49 TPLHLAAYFGHLEIVEVLLK--NGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNG-A 104
Query: 201 EVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGA 237
+VNA + +G+T L + A +I L+I + L GA
Sbjct: 105 DVNANDHNGFTPLHLAA----NIGHLEIVEVLLKHGA 137
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ G +PLH+AA G+++IV+ LL+ D+ A D+ G PLH+AA+ G +++ VE+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEI-VEVLLK 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+ W +T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + +D GS+PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA+ G ++++ L +
Sbjct: 108 -AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA G +++ VE+ + I
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEI-VEVLLKHGADVNAIDI 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
T LHL E ++ L+ D +NA D +G + LHLA +E + LL +
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 136 G-ADVNAQDKFGKTAFDI 152
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AAL GHL E+L + +D+ G +PLH+AA G+++IV+ LL+ D+
Sbjct: 82 TPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
+TPLH+AA+ GHL + +L+ + + D G + ++ G D+ + L ++N
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA G L E+L + DS G +PLH+AA G+++IV+ LL+ D+
Sbjct: 41 TPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA+ G+++++ L +
Sbjct: 100 -AYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR- 126
D G +PLH+AA G ++IV+ LL+ D+ A D G PLH+AA G ++++ L +
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 127 ARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADK 186
AY W T LHL Q E ++ L+ D +NA+D G++ +++
Sbjct: 95 GADVNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQG 149
Query: 187 Q 187
Q
Sbjct: 150 Q 150
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR--ARPFAAYST 135
AA G D V+ L+ D+ A D +G PLH+AA G+++++ L + A A+ S
Sbjct: 13 AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 136 TIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195
I T LHL E ++ L+ D +NA D G + LHLA Q+E + LL
Sbjct: 72 GI---TPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 196 VNTRVEVNALNTHGYTALDI-LAQSRRDIKDL 226
+ +VNA + G TA DI + Q + D+ ++
Sbjct: 126 KHG-ADVNAQDALGLTAFDISINQGQEDLAEI 156
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + D G +PLH+AA G ++IV+ LL+ D+
Sbjct: 74 TPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G ++ +G+ + L E+ +
Sbjct: 133 -AQDALGLTAFDISINQGQ-EDLAEILQ 158
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL + +L+ + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D DG PLH+AA G ++++ L +
Sbjct: 108 -AMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ G++PLH+AA G+++IV+ LL+ D+ A DV G PLH+AA G +++ VE+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEI-VEVLLK 101
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+ T LHL K E ++ L+ D +NA+D +G + +++
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AA G +++ VE+ ++ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEI-VEVLLKHGADVDASDV 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
+ T LHL E ++ L+ N D +NA D GM+ LHLA +E + LL +
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLK--NGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 136 G-ADVNAQDKFGKTAFDI 152
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL E+L + +DS G +PLH+AA+ GY++IV+ LL+ D+
Sbjct: 82 TPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+ GHL E+L + D G +PLH+AA +G+++IV+ LL+ D+
Sbjct: 49 TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A D G PLH+AA G ++++ L +
Sbjct: 108 -AMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL E+L + +D +G +PLH+AA+ G+++IV+ LL+ D+
Sbjct: 82 TPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 141 -AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR-ARPFAAYSTT 136
AA+ G D V+ L+ D+ A D G PLH+ G ++++ L + A A +
Sbjct: 21 AARAGQDDEVRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS 79
Query: 137 IWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196
W T LHL E ++ L+ D +NA D G + LHLA D +E + LL
Sbjct: 80 GW--TPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLL- 133
Query: 197 NTRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 134 KYGADVNAQDKFGKTAFDI 152
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 141 TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRV 200
T LHL V + E ++ L+ D +NA D G + LHLA +E + LL
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAAD---VNASDKSGWTPLHLAAYRGHLEIVEVLL-KYGA 104
Query: 201 EVNALNTHGYTALDILAQS 219
+VNA++ GYT L + A+
Sbjct: 105 DVNAMDYQGYTPLHLAAED 123
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILA 217
+NA D +G++ LHL V + +E I LL +VNA + G+T L + A
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAA 88
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
GSSPLH+AA G D++ LL+ + AR+ D PLH+A +G QV+ L +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 131 AAYSTTIWNETVLHLCVK-HNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIE 189
N +++ C H++ AL ++ +NA ++ G + LH AV +K +
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVAL-----LLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 190 TINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADS 231
+ LL++ V LN TA+D Q+ + ++ L + S
Sbjct: 200 VVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 8/178 (4%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCL 99
PLH A + +E+L P L + D G PLH + +I LL ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 100 AR--DVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNE--TVLHLCVKHNQFEAL 155
D G P H+A G ++V+ L+ RP I N+ T LHL V FE
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 156 KFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTAL 213
+FL+ + + KD + LH A + ++ I L + VN + G+T L
Sbjct: 124 QFLIE---NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 39 TPLHVAALRGHLHFAKEILRR--TPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD 96
TP H+A G+L K + R P L ++ ++G + LH+A K + ++ + L++ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGA 131
Query: 97 MCLARDVDGRNPLHVAAMKGRIQVLVELF 125
+D + PLH AA G ++ L+EL
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLK-LIELL 159
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 8/178 (4%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCL 99
PLH A + +E+L P L + D G PLH + +I LL ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 100 AR--DVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNE--TVLHLCVKHNQFEAL 155
D G P H+A G ++V+ L+ RP I N+ T LHL V FE
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 156 KFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTAL 213
+FL+ + + KD + LH A + ++ I L + VN + G+T L
Sbjct: 124 QFLIE---NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 39 TPLHVAALRGHLHFAKEILRR--TPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD 96
TP H+A G+L K + R P L ++ ++G + LH+A K + ++ + L++ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGA 131
Query: 97 MCLARDVDGRNPLHVAAMKGRIQVLVELF 125
+D + PLH AA G ++ L+EL
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLK-LIELL 159
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 8/178 (4%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCL 99
PLH A + +E+L P L + D G PLH + +I LL ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 100 AR--DVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNE--TVLHLCVKHNQFEAL 155
D G P H+A G ++V+ L+ RP I N+ T LHL V FE
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 156 KFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTAL 213
+FL+ + + KD + LH A + ++ I L + VN + G+T L
Sbjct: 124 QFLIE---NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 39 TPLHVAALRGHLHFAKEILRR--TPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD 96
TP H+A G+L K + R P L ++ ++G + LH+A K + ++ + L++ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGA 131
Query: 97 MCLARDVDGRNPLHVAAMKGRIQVLVELF 125
+D + PLH AA G ++ L+EL
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLK-LIELL 159
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 45 ALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVD 104
A G L KE + LA D + LH A G+ +IV+ LLQ+ + +D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 73
Query: 105 GRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164
G +PLH+AA GR +++ L + + T LH N+ E L+ +
Sbjct: 74 GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 165 PDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRR 221
PD AKD Y + +H A A ++ I ++L+ + N +T G T L + R
Sbjct: 133 PD---AKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEER 185
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL----QVN 94
T LH A GH E L + V + D G SPLH+AA G +IVK LL QVN
Sbjct: 43 TALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 95 PDMCLARDVDGRNPLHVAAMKGRIQVLVELFR--ARPFAAYSTTIWNETVLHLCVKHNQF 152
A + +G PLH AA K R ++ V L A P A + T +H
Sbjct: 102 -----AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMHRAAAKGNL 153
Query: 153 EALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195
+ + L+ N +D G + LHLA ++++E L+
Sbjct: 154 KMIHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLV 193
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Query: 45 ALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVD 104
A G L KE + LA D + LH A G+ +IV+ LLQ+ + +D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 105 GRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164
G +PLH+AA GR +++ L + + T LH N+ E L+ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 165 PDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRR 221
PD AKD Y + +H A A ++ I ++L+ + N +T G T L + R
Sbjct: 132 PD---AKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEER 184
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL----QVN 94
T LH A GH E L + V + D G SPLH+AA G +IVK LL QVN
Sbjct: 42 TALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 95 PDMCLARDVDGRNPLHVAAMKGRIQVLVELFR--ARPFAAYSTTIWNETVLHLCVKHNQF 152
A + +G PLH AA K R ++ V L A P A + T +H
Sbjct: 101 -----AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMHRAAAKGNL 152
Query: 153 EALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195
+ + L+ N +D G + LHLA ++++E L+
Sbjct: 153 KMIHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLV 192
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D R S+PLH+AA V IV+ LLQ D+ A+D G PLH A G +V EL
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEV-TELLLK 112
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ 187
+ +W T LH N+ E L+S DP +N +G S + +A +
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMAPTPEL 169
Query: 188 IETINY 193
E + Y
Sbjct: 170 RERLTY 175
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQV 93
N+ TPLHVAA R H + E+L + LDS G + LH AA G++ + LL
Sbjct: 244 NKDFMTPLHVAAERAH-NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Query: 94 NPD 96
D
Sbjct: 303 GSD 305
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 37 HETPLH--VAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
HET LH VA+L E+L R E + +PLH+AA++ + D++ E+L +
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM-EVLHKH 269
Query: 95 PDMCLARDVDGRNPLHVAAMKGRIQV 120
A D G+ LH AA+ G +Q
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQT 295
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 6/177 (3%)
Query: 45 ALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVD 104
A G L KE + LA D + LH A G+ +IV+ LLQ+ + +D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 105 GRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164
G +PLH+AA GR +++ L + + T LH N+ E L+ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 165 PDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRR 221
PD AKD Y + +H A A ++ ++ LL + N +T G T L + R
Sbjct: 132 PD---AKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEER 184
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
T LH A GH E L + V + D G SPLH+AA G +IVK LL V
Sbjct: 42 TALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHV 99
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR--ARPFAAYSTTIWNETVLHLCVKHNQFEALK 156
A + +G PLH AA K R ++ V L A P A ++ T +H + +
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNLKMVH 156
Query: 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196
L+ N +D G + LHLA ++++E +L+
Sbjct: 157 ILLFYKAST---NIQDTEGNTPLHLACDEERVEEAKFLVT 193
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
T LH A GH E L + V + D G SPLH+AA G +IVK LL V
Sbjct: 42 TALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHV 99
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR--ARPFAAYSTTIWNETVLHLCVKHNQFEALK 156
A + +G PLH AA K R ++ V L A P A ++ T +H + +
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNLKMVH 156
Query: 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196
L+ N +D G + LHLA ++++E +L+
Sbjct: 157 ILLFYKAST---NIQDTEGNTPLHLACDEERVEEAKFLVT 193
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
Query: 45 ALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVD 104
A G L KE + LA D + LH A G+ +IV+ LLQ+ + +D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 105 GRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164
G +PLH+AA G +++ L + + T LH N+ E L+ +
Sbjct: 73 GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 165 PDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRR 221
PD AKD Y + +H A A ++ ++ LL + N +T G T L + R
Sbjct: 132 PD---AKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEER 184
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSR---GSSPLHMAAQKGYVDIVKELLQVNP 95
TPLH AA GH K++L + ++++R G++PLH+AA+ G+ +IVK LL
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 96 DMCLARDVDGRNPLHVAAMKGRIQVLVELFRAR 128
D+ AR DG P H+A G ++ V+L A+
Sbjct: 67 DVN-ARSKDGNTPEHLAKKNGHHEI-VKLLDAK 97
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 104 DGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMN 163
DG PLH AA G + + +L ++ + + T LHL K+ E +K L++
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 164 DPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNA 204
D +NA+ G + HLA + E + LL +VNA
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 46/145 (31%)
Query: 73 SPLHMAAQKGYVDIVKELLQ--VNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
SPLH AA+ G+VDI L+Q N D C D R PL AA
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAA----------------- 52
Query: 131 AAYSTTIWNETVLHLCVKHNQFEALKFLV--SIMNDPDFLNAKDDYGMSILHLAVADKQI 188
++N EA+K+L+ + DP KD G + LHLA
Sbjct: 53 -----------------ENNHLEAVKYLIKAGALVDP-----KDAEGSTCLHLAAKKGHY 90
Query: 189 ETINYLLVNTRVEVNALNTHGYTAL 213
E + YLL N +++VN + G+T +
Sbjct: 91 EVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
T LH+AA +GH + +L + D G +P+ A + +VD+VK LL D+
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
+ RD + LH AA G + + E+ A ++ I ++ LH+ + N+++ +
Sbjct: 139 I-RDNEENICLHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 159 VSIMNDPDFLNAKDDYGMSILHLAVADKQI 188
+S +D + K+ G + L A + Q+
Sbjct: 197 LSRDSD---VTLKNKEGETPLQCASLNSQV 223
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 39/183 (21%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPL AA HL K +++ L D+ GS+ LH+AA+KG+ ++V+ LL
Sbjct: 46 TPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS------ 98
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158
G++ V + ++ IW H+ + +K L
Sbjct: 99 ----------------NGQMDV-----NCQDDGGWTPMIWATEYKHV-------DLVKLL 130
Query: 159 VSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQ 218
+S +D +N +D+ LH A ++ I +L+ + +++A+N HG + L I A+
Sbjct: 131 LSKGSD---INIRDNEENICLHWAAFSGCVD-IAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 219 SRR 221
R
Sbjct: 187 ENR 189
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
+D G +PLH+AA++G+++IV+ LL+ D+ ARD+ GR PLH+AA G ++++ L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 108 -AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
A + G D V+ L+ D+ A D G PLH+AA +G +++ VE+ + I
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNARDI 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
W T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILA 217
+NA DD G++ LHLA +E + LL + +VNA + G T L + A
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDIWGRTPLHLAA 88
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 65 GELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRN--PLHVAAMKGRIQVLV 122
G +S L AA+ G V+ VK+L V C RD++GR PLH AA R+ V V
Sbjct: 4 GSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSV-V 60
Query: 123 ELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLA 182
E ++ LH + +E + LV +N D + + LH A
Sbjct: 61 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEA 117
Query: 183 VADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAF 238
A + E I LL+ + N G T LD++ DI+DL LRG A
Sbjct: 118 AAKGKYE-ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDL-----LRGDAAL 167
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 44 AALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDV 103
AA G + K++ V +++ R S+PLH AA V +V+ LLQ D+ A+D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 75
Query: 104 DGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMN 163
G PLH A G +V EL +W T LH ++E K L+
Sbjct: 76 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 164 DP 165
DP
Sbjct: 135 DP 136
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
+ N + L AA G + K++ V +++ R S+PLH AA V +V+ LL
Sbjct: 7 LGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ 151
Q D+ A+D G PLH A G +V EL +W T LH +
Sbjct: 67 QHGADV-HAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 152 FEALKFLVSIMNDP 165
+E K L+ DP
Sbjct: 125 YEICKLLLQHGADP 138
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 14/173 (8%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRN--PLHVAAMKGRIQVLVELF 125
+S L AA+ G V+ VK+L V C RD++GR PLH AA R+ V VE
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSV-VEYL 65
Query: 126 RARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185
++ LH + +E + LV +N D + + LH A A
Sbjct: 66 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEAAAK 122
Query: 186 KQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAF 238
+ E I LL+ + N G T LD++ DI+DL LRG A
Sbjct: 123 GKYE-ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDL-----LRGDAAL 169
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
+ N + L AA G + K++ V +++ R S+PLH AA V +V+ LL
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ 151
Q D+ A+D G PLH A G +V EL +W T LH +
Sbjct: 63 QHGADV-HAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 152 FEALKFLVSIMNDP 165
+E K L+ DP
Sbjct: 121 YEICKLLLQHGADP 134
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 14/173 (8%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRN--PLHVAAMKGRIQVLVELF 125
+S L AA+ G V+ VK+L V C RD++GR PLH AA R+ V VE
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSV-VEYL 61
Query: 126 RARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185
++ LH + +E + LV +N D + + LH A A
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEAAAK 118
Query: 186 KQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAF 238
+ E I LL+ + N G T LD++ DI+DL LRG A
Sbjct: 119 GKYE-ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDL-----LRGDAAL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
LD G +PLH+AAQ G+++IV+ LL+ D+ A D G PLH+AA++G ++++ L +
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA GHL + +L+ + E D+ G +PLH+AA +G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKG 116
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNG 124
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 39/138 (28%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D DG PLH+AA G ++++ L + Y +
Sbjct: 21 AARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLK------YGADV 73
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
NA+D++G++ LHLA +E + LL +
Sbjct: 74 -------------------------------NAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 103 G-ADVNAQDKFGKTAFDI 119
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILA 217
+NA D+ G++ LHLA +E + LL +VNA + G T L + A
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAA 88
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
+D G +PLH+AA++G+++IV+ LL+ D+ A D+ GR PLH+AA G ++++ L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL E+L + D G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 108 -AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
A + G D V+ L+ D+ A D G PLH+AA +G +++ VE+ ++ I
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNASDI 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
W T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILA 217
+NA DD G++ LHLA +E + LL + +VNA + G T L + A
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDIWGRTPLHLAA 88
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA RGHL E+L + DS G +PLH+AA G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 108 -AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
+D G +PLH+AA++G+++IV+ LL+ D+ A D GR PLH+AA G ++++ L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
A + G D V+ L+ D+ A D G PLH+AA +G +++ VE+ ++
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNASDS 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
W T LHL E ++ L+ D +NA+D +G + +++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILA 217
+NA DD G++ LHLA +E + LL + +VNA ++ G T L + A
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSWGRTPLHLAA 88
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
D +G++PLH+AA +++IV+ LL+ D+ A D DG PLH+AA+ G ++++ L +
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQV 93
+R TPLH+AA HL E+L + D+ GS+PLH+AA G+++IV+ LL+
Sbjct: 44 DRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 94 NPDMCLARDVDGRNPLHVAAMKG 116
D+ A+D G+ ++ G
Sbjct: 103 GADVN-AQDKFGKTAFDISIDNG 124
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 141 TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRV 200
T LHL ++ E ++ L+ D +NA D+ G + LHLA +E + LL +
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGHLEIVEVLLKHG-A 104
Query: 201 EVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 105 DVNAQDKFGKTAFDI 119
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDM 97
+ PLH AA RG+L + +E L + G LD GS+ L+ A G+ DIV+ L P++
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEXLF-TQPNI 131
Query: 98 CLARDVD-GRNPLHVAAMKGRIQVLVELFRAR 128
L + G LH AA KG + V+L A+
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADI-VQLLLAK 162
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G+SPLH+AAQ G+ + LL+ VD R PLH+AA +G + VE+
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANI-VEVLLK 88
Query: 128 RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164
+ + T LH +HN E ++ L+ D
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
+PLH+AA GH E+L R V +PLHMAA +G+ +IV+ LL+ D+
Sbjct: 36 SPLHLAAQYGHF-STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELF 125
A+D+ LH A Q +VEL
Sbjct: 95 -AKDMLKMTALHWATEHNH-QEVVELL 119
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 40/195 (20%)
Query: 54 KEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAA 113
KEIL+ T E+D+ G++PL++A ++I K L+ D+ L + +P A
Sbjct: 22 KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAG 80
Query: 114 MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDD 173
+GR ++L + + ++T N KHN+
Sbjct: 81 AQGRTEILAYMLK------HATPDLN--------KHNR---------------------- 104
Query: 174 YGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDL--DIADS 231
YG + L A I+ + LL + R +++ N GYTAL I A R+ L DI
Sbjct: 105 YGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDIVKL 163
Query: 232 LRGAGAFKAIEIQSS 246
L GA ++I+ S
Sbjct: 164 LMENGADQSIKDNSG 178
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 2 ESLLYEASVEGNITTXXXXXXXXXXXXXKVVANRHHETPLHVAALRGHLHFAKEILRRTP 61
E+LL+ AS++G+I + K A TPLH A GHL E+L +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVV-ELLLQHK 66
Query: 62 VLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
L + SPLH AA+ G+VDIVK LL
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRR--TPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
N ET LH+A+++G + + +L+ P + D G +PLH A G++ +V+ LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELLL 63
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVL 121
Q + + +PLH AA G + ++
Sbjct: 64 Q-HKALVNTTGYQNDSPLHDAAKNGHVDIV 92
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA+ HL E+L + +D+ G +PLH+ A G+++IV+ LL+ D+
Sbjct: 49 TPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKG 116
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNG 124
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
D G +PLH+AA +++IV+ LL+ D+ A D G PLH+ AM G ++++ L +
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A D G PLH+AAM +++ VE+ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDKVGLTPLHLAAMNDHLEI-VEVLLKNGADVNAIDA 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
ET LHL + E ++ L+ D +NA+D +G + +++
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILA 217
+NA+D G++ LHLA + +E + LL N +VNA++ G T L ++A
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG-ADVNAIDAIGETPLHLVA 88
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
ETPLH+ A+ GHL + +L+ + + D G + ++ G D+ + L ++N
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 37 HETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ---- 92
H +PLH A L GHL K +L+ + G + + +PL A G D V LLQ
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 93 VNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNE-----TVLHLCV 147
V P+ LA +P+H AA +G ++ + L AY I ++ T L+L
Sbjct: 151 VQPESDLA------SPIHEAARRGHVECVNSLI------AYGGNIDHKISHLGTPLYLAC 198
Query: 148 KHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNT 207
++ Q +K L+ D + +D S LH AV E + LL++ + A N
Sbjct: 199 ENQQRACVKKLLESGADVNQGKGQD----SPLH-AVVRTASEELACLLMDFGADTQAKNA 253
Query: 208 HGYTALDIL 216
G ++++
Sbjct: 254 EGKRPVELV 262
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 27/189 (14%)
Query: 37 HETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ---- 92
H +PLH A L GHL K +L+ + G + + +PL A G D V LLQ
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 93 VNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNE-----TVLHLCV 147
V P+ LA +P+H AA +G ++ + L AY I ++ T L+L
Sbjct: 95 VQPESDLA------SPIHEAARRGHVECVNSLI------AYGGNIDHKISHLGTPLYLAC 142
Query: 148 KHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNT 207
++ Q +K L+ D + +D S LH AVA E + LL++ + A N
Sbjct: 143 ENQQRACVKKLLESGADVNQGKGQD----SPLH-AVARTASEELACLLMDFGADTQAKNA 197
Query: 208 HGYTALDIL 216
G ++++
Sbjct: 198 EGKRPVELV 206
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRRTPV---LAGELDSRGSSPLHMAAQKGYVDIVKEL 90
++ + T LH AA+ + K + + + L G+L+S +PLH A ++G++ +V +L
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS---TPLHWATRQGHLSMVVQL 95
Query: 91 LQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARP--------------FAAYSTT 136
++ D L D +G + +H+AA G ++ L +AAY T
Sbjct: 96 MKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 137 IWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGM-SILHLAVADKQIETINYLL 195
+ T L L F VS+ N D Y + LH AV I+ LL
Sbjct: 155 SVDPTRL----------LLTFNVSV-------NLGDKYHKNTALHWAVLAGNTTVIS-LL 196
Query: 196 VNTRVEVNALNTHGYTALDILAQSRRDI 223
+ V+A N G +ALD LA+ R+++
Sbjct: 197 LEAGANVDAQNIKGESALD-LAKQRKNV 223
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGR---IQVLVE 123
G + LH+AA KGY +++K L+Q D+ + +D DG PLH AA G+ ++LVE
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
T LH A + ++ K ++ + + D+ G PLH AA GY+DI + L+ +
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 99 LARDVDGRNPLHV----------------------AAMKGRIQVLVELFRARPFAAYSTT 136
A + +G PL + AA K ++++ R + +
Sbjct: 134 -AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 137 IWNE----TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETIN 192
+ + T LH+ E LK L+ D +N KD G + LH A A E
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLH-AAAHWGKEEAC 248
Query: 193 YLLVNTRVEVNALNTHGYTALDI 215
+LV ++ A+N G TA D+
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDV 271
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGS-SPLHMAAQKGYVDIVKELL 91
+ H +PLH A G + ++ R + + +RG +PLH+AA G+ DIV++LL
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVEL 124
Q D+ A + G PLH A G+ QV +L
Sbjct: 93 QYKADIN-AVNEHGNVPLHYACFWGQDQVAEDL 124
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
V NR +TPLH+AA GH +++L+ + ++ G+ PLH A G + ++L+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G SPLH A ++G +V+ L+ + + D PLH+AA G ++ +L +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQY 94
Query: 128 R 128
+
Sbjct: 95 K 95
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGS-SPLHMAAQKGYVDIVKELL 91
+ H +PLH A G + ++ R + + +RG +PLH+AA G+ DIV++LL
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVEL 124
Q D+ A + G PLH A G+ QV +L
Sbjct: 88 QYKADIN-AVNEHGNVPLHYACFWGQDQVAEDL 119
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
V NR +TPLH+AA GH +++L+ + ++ G+ PLH A G + ++L+
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G SPLH A ++G +V+ L+ + + D PLH+AA G ++ +L +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQY 89
Query: 128 R 128
+
Sbjct: 90 K 90
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLD 227
+NAKD+YG++ L+LA A +E + LL N +VNA++ G+T L + A I L+
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAF----IGHLE 94
Query: 228 IADSLRGAGA 237
IA+ L GA
Sbjct: 95 IAEVLLKHGA 104
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPL++A GHL E+L + +D+ G +PLH+AA G+++I + LL+ D+
Sbjct: 49 TPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKG 116
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIGNG 124
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
D G +PL++A G+++IV+ LL+ D+ A D G PLH+AA G +++ L +
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 39/138 (28%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ L+ D+ A+D G PL++A G ++++ L +
Sbjct: 21 AARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLK----------- 68
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197
N D +NA D G + LHLA +E I +L+
Sbjct: 69 -------------------------NGAD-VNAVDAIGFTPLHLAAFIGHLE-IAEVLLK 101
Query: 198 TRVEVNALNTHGYTALDI 215
+VNA + G TA DI
Sbjct: 102 HGADVNAQDKFGKTAFDI 119
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
TPLH+AA+ GHL E+L + + G +PLH+AA +++IV+ LL+ D+
Sbjct: 49 TPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 99 LARDVDGRNPLHVAAMKGRIQVLVELFR 126
A+D G+ ++ G + L E+ +
Sbjct: 108 -AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
D G +PLH+AA G+++IV+ LL+ D+ + GR PLH+AA ++++ L +
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLK 101
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI 137
AA+ G D V+ +L N A D G PLH+AAM G +++ VE+ +T
Sbjct: 21 AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEI-VEVLLKNGADVNATGN 78
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
T LHL + E ++ L+ D +NA+D +G + +++
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 122 VELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHL 181
V + A + W T LHL E ++ L+ N D +NA + G + LHL
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK--NGAD-VNATGNTGRTPLHL 86
Query: 182 AVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215
A +E + LL + +VNA + G TA DI
Sbjct: 87 AAWADHLEIVEVLLKHG-ADVNAQDKFGKTAFDI 119
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
G +PLH A Q DIV+ LL+ D L R +G P +AA+ G ++ L++LF ++
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFILAAIAGSVK-LLKLFLSKGA 116
Query: 131 AAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDF-LNAKDDY------GMSILHLAV 183
+ T + + +ALKFL + + K+D G + L A
Sbjct: 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176
Query: 184 ADKQIETINYLLVNTRVEVNALNTHGYTAL 213
+E + LL +VNA + G AL
Sbjct: 177 EKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKEL 90
V+ ++ TP +AA+ G + K L + + E D G + AA G V +K L
Sbjct: 86 VLRKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 91 LQVNPDMCLARDVD---------GRNPLHVAAMKGRIQVL-VELFRARPFAAYSTTIWNE 140
+ ++ L R G L AA KG ++VL + L +
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 141 TVLH--LCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT 198
++H L + EA+ L +++ +N + + G + L LAV K + + LL
Sbjct: 205 ALIHALLSSDDSDVEAITHL--LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 262
Query: 199 RVEVNALNTHGYTAL 213
+E+N ++ G TAL
Sbjct: 263 HIEINDTDSDGKTAL 277
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 9/150 (6%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPF 130
G +PLH A Q DIV+ LL+ D L R +G P +AA+ G ++ L++LF ++
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFLLAAIAGSVK-LLKLFLSKGA 96
Query: 131 AAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDF-LNAKDDY------GMSILHLAV 183
+ T + + +ALKFL + + K+D G + L A
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 184 ADKQIETINYLLVNTRVEVNALNTHGYTAL 213
+E + LL +VNA + G AL
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 15/195 (7%)
Query: 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKEL 90
V+ ++ TP +AA+ G + K L + + E D G + AA G V +K L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 91 LQVNPDMCLARDVD---------GRNPLHVAAMKGRIQVL-VELFRARPFAAYSTTIWNE 140
+ ++ L R G L AA KG ++VL + L +
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 141 TVLH--LCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT 198
++H L + EA+ L +++ +N + + G + L LAV K + + LL
Sbjct: 185 ALIHALLSSDDSDVEAITHL--LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242
Query: 199 RVEVNALNTHGYTAL 213
+E+N ++ G TAL
Sbjct: 243 HIEINDTDSDGKTAL 257
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 39/181 (21%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRR--TPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
N +TPLH+A + A+ +L P L D RG++PLH+A ++G
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQG--------- 89
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ 151
CLA + V L + +A + + T LHL H
Sbjct: 90 ------CLAS-------VGVLTQSCTTPHLHSILKATNYNGH-------TCLHLASIHGY 129
Query: 152 FEALKFLVSIMNDPDFLNAKDDY-GMSILHLAVADKQIETINYLLVNTRVEVNALNTHGY 210
++ LVS+ D +NA++ G + LHLAV D Q + LL+ +VN + GY
Sbjct: 130 LGIVELLVSLGAD---VNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 211 T 211
+
Sbjct: 186 S 186
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 104 DGRNPLHVAAMKGRIQVLVELFRA----RPFAAYSTTIWNETVLHLCVKHNQFEALKFLV 159
DG + LH+A + + +E+ R F + + +T LHL V NQ E + L+
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALL 65
Query: 160 SIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVE-----VNALNTHGYTALD 214
DP+ +D G + LHLA + ++ L + + A N +G+T L
Sbjct: 66 GAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 215 I 215
+
Sbjct: 123 L 123
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 39/181 (21%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRR--TPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91
N +TPLH+A + A+ +L P L D RG++PLH+A ++G
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQG--------- 86
Query: 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ 151
CLA + V L + +A + + T LHL H
Sbjct: 87 ------CLAS-------VGVLTQSCTTPHLHSILKATNYNGH-------TCLHLASIHGY 126
Query: 152 FEALKFLVSIMNDPDFLNAKDDY-GMSILHLAVADKQIETINYLLVNTRVEVNALNTHGY 210
++ LVS+ D +NA++ G + LHLAV D Q + LL+ +VN + GY
Sbjct: 127 LGIVELLVSLGAD---VNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVNRVTYQGY 182
Query: 211 T 211
+
Sbjct: 183 S 183
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 104 DGRNPLHVAAMKGRIQVLVELFRA----RPFAAYSTTIWNETVLHLCVKHNQFEALKFLV 159
DG + LH+A + + +E+ R F + + +T LHL V NQ E + L+
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALL 62
Query: 160 SIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVE-----VNALNTHGYTALD 214
DP+ +D G + LHLA + ++ L + + A N +G+T L
Sbjct: 63 GAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 119
Query: 215 I 215
+
Sbjct: 120 L 120
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 63 LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLV 122
L + D G + LH+AA+ D K LL+ + D + +D GR PLH A V
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQ 75
Query: 123 ELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 180
L R R + T L L + L ++N +NA DD G S LH
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALH 130
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 63 LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLV 122
L + D G + LH+AA+ D K LL+ + D + +D GR PLH A V
Sbjct: 50 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQ 108
Query: 123 ELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 180
L R R + T L L + L ++N +NA DD G S LH
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALH 163
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 63 LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLV 122
L + D G + LH+AA+ D K LL+ + D + +D GR PLH A V
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQ 107
Query: 123 ELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 180
L R R + T L L + L ++N +NA DD G S LH
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 63 LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLV 122
L + D G + LH+AA+ D K LL+ + D + +D GR PLH A V
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXI-QDNMGRTPLHAAVSADAQGVFQ 72
Query: 123 ELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 180
L R R + T L L + L ++N +NA DD G S LH
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAAR---LALEGMLEDLINSHADVNAVDDLGKSALH 127
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 63 LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLV 122
L + D G++ LH+AA D K LL+ + D + +D GR PLH A V
Sbjct: 49 LHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQ 107
Query: 123 ELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 180
L R R + T L L + L ++N +NA DD G S LH
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 127 ARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADK 186
+P E VLHL VK +L + I+ + L+AK G + LH A
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237
Query: 187 QIETINYLLVNTRVEVNALNTHGYTALDI 215
Q + + LL+ R V +N G TALDI
Sbjct: 238 QPDCLK-LLLKGRALVGTVNEAGETALDI 265
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 102 DVDGRNPLHVAAMKGR---IQVLVELFR--ARPFAAYSTTIWNETVLHLCVKHNQFEALK 156
D DG PLH+A ++G + LV LF+ R Y+ +T LHL V ++
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN--LRQTPLHLAVITTLPSVVR 63
Query: 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT---RVEVNALNTHGYTAL 213
LV+ P L D +G + HLA + + LL + +++ A N G TAL
Sbjct: 64 LLVTAGASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 214 DI 215
+
Sbjct: 121 HV 122
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 63 LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRN-----PLHVAAMKGR 117
+A D G +PLH+A +G + V L VN R++D N PLH+A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRL--VNLFQQGGRELDIYNNLRQTPLHLAVIT-T 57
Query: 118 IQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDF-LNAKDDYGM 176
+ +V L + + +T HL +H L+ L+ L A++ G+
Sbjct: 58 LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117
Query: 177 SILHLAVADKQIETINYLL 195
+ LH+AV + ET+ LL
Sbjct: 118 TALHVAVNTECQETVQLLL 136
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 56/244 (22%)
Query: 33 ANRHHETPLHVAALRGHL-----------HFAKEI-----LRRTP--------------- 61
A+ +TPLH+A ++G+L +E+ LR+TP
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 62 -VLAG----ELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCL---ARDVDGRNPLHVAA 113
V AG LD G + H+A + ++ LL L AR+ DG LHVA
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 114 ---MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNA 170
+ +Q+L+E R A ++H V++N ++ L + +NA
Sbjct: 125 NTECQETVQLLLE--RGADIDAVDIKSGRSPLIH-AVENNSLSMVQLL---LQHGANVNA 178
Query: 171 KDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIAD 230
+ G S LH A + + + + LV + + + N H T L ++A+SRR + D
Sbjct: 179 QMYSGSSALHSA-SGRGLLPLVRTLVRSGADSSLKNCHNDTPL-MVARSRR------VID 230
Query: 231 SLRG 234
LRG
Sbjct: 231 ILRG 234
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 70 RGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFR 126
+G + LH AAQ IVK L+ +D DG+ P+ +AA +GRI+V+ L +
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
T LH AA + K ++ + D G +P+ +AAQ+G +++V L+Q
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKG 116
D GS+PLH+AA+ G++++VK LL+ D+ A+D G+ ++ G
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNG 101
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
AA+ G D V+ L+ D+ A+D +G PLH+AA G ++V+ L A
Sbjct: 31 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 170 AKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215
AKD G + LHLA + +E + LL+ +V A + G TA DI
Sbjct: 52 AKDKNGSTPLHLAARNGHLEVVK-LLLEAGADVXAQDKFGKTAFDI 96
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
+++ TPLH+AA GHL K +L + + D G + ++ G D+ E+LQ
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA-EILQ 110
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 127 ARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADK 186
+P E VLHL VK +L + I+ + L+AK G + LH A
Sbjct: 159 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 218
Query: 187 QIETINYLLVNTRVEVNALNTHGYTALDI 215
Q + + LL+ R V +N G TALDI
Sbjct: 219 QPDCLK-LLLKGRALVGTVNEAGETALDI 246
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKEL 90
V + + TPL + A + A E L + + DS G PLH A G+ +
Sbjct: 229 VNGGQDNATPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 91 LQVNPDMCLARDVDGRNPLHVA--AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVK 148
L+ D+ ARD +GR+PL +A I L+ L + R A +ET L +
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI--- 343
Query: 149 HNQFEALKFLVSIMNDPDFLN 169
F + S +DP+ L+
Sbjct: 344 ---FRDFSLMAS--DDPEKLS 359
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVL 121
D+ G+SP+H AA+ G++D +K L++ D+ + D G P+H+A +G V+
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVV 117
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G+ P+H+A Q+G+ +V L D+ RD G PL +A +G Q LV++ +
Sbjct: 98 DGTGALPIHLAVQEGHTAVVS-FLAAESDLH-RRDARGLTPLELALQRG-AQDLVDILQG 154
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 40 PLHVAALRGH------LHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
P+H+A GH L ++ RR D+RG +PL +A Q+G D+V ++LQ
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESDLHRR--------DARGLTPLELALQRGAQDLV-DILQ 153
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKEL 90
V + + TPL + A + A E L + + DS G PLH A G+ +
Sbjct: 229 VNGGQDNATPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 91 LQVNPDMCLARDVDGRNPLHVA--AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVK 148
L+ D+ ARD +GR+PL +A I L+ L + R A +ET L +
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI--- 343
Query: 149 HNQFEALKFLVSIMNDPDFLN 169
F + S +DP+ L+
Sbjct: 344 ---FRDFSLMAS--DDPEKLS 359
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVL 121
D+ G+SP+H AA+ G++D +K L++ D+ + D G P+H+A +G V+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVV 123
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D G+ P+H+A Q+G+ +V L D+ RD G PL +A +G Q LV++ +
Sbjct: 104 DGTGALPIHLAVQEGHTAVVS-FLAAESDLH-RRDARGLTPLELALQRG-AQDLVDILQG 160
Query: 128 RPFA 131
A
Sbjct: 161 HMVA 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 40 PLHVAALRGH------LHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
P+H+A GH L ++ RR D+RG +PL +A Q+G D+V ++LQ
Sbjct: 110 PIHLAVQEGHTAVVSFLAAESDLHRR--------DARGLTPLELALQRGAQDLV-DILQ 159
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKEL 90
V + + TPL + A + A E L + + DS G PLH A G+ +
Sbjct: 229 VNGGQDNATPL-IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 91 LQVNPDMCLARDVDGRNPLHVA--AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVK 148
L+ D+ ARD +GR+PL +A I L+ L + R A +ET L +
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI--- 343
Query: 149 HNQFEALKFLVSIMNDPDFLN 169
F + S +DP+ L+
Sbjct: 344 ---FRDFSLMAS--DDPEKLS 359
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKG 116
D GS+PLH+AA+ G++++VK LL+ D+ A+D G+ ++ G
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAFDISIDNG 83
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 170 AKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215
AKD G + LHLA + +E + LL+ +VNA + G TA DI
Sbjct: 34 AKDKNGSTPLHLAARNGHLEVVK-LLLEAGADVNAQDKFGKTAFDI 78
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
AA+ G D V+ L+ D+ A+D +G PLH+AA G ++V+ L A
Sbjct: 13 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
+++ TPLH+AA GHL K +L + + D G + ++ G D+ E+LQ
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLA-EILQ 92
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVL 121
D+ G+SP+H AA+ G++D +K L++ D+ A D G P+H+A +G V+
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVV 125
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
+P+H AA G L K +L LDS GS P+H+A ++G+ +V L P+
Sbjct: 78 SPVHDAARTGFLDTLK-VLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESD 133
Query: 99 L-ARDVDGRNPLHVAAMKG 116
L RD G PL +A +G
Sbjct: 134 LHHRDASGLTPLELARQRG 152
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVL 121
D+ G+SP+H AA+ G++D +K L++ D+ A D G P+H+A +G V+
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVV 123
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMC 98
+P+H AA G L K +L LDS GS P+H+A ++G+ +V L P+
Sbjct: 76 SPVHDAARTGFLDTLK-VLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESD 131
Query: 99 L-ARDVDGRNPLHVAAMKG 116
L RD G PL +A +G
Sbjct: 132 LHHRDASGLTPLELARQRG 150
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 41 LHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD-MCL 99
+H A +G L KE LR+ L + D RG +PL A+ G ++ V+ LL+ D L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 100 ARDVDGRNPLHVAAMKGRIQVL-VELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKF 157
A++ + + L +A+ G ++ + L R Y WN T L V+ N + ++
Sbjct: 66 AKERE--SALSLASTGGYTDIVGLLLERDVDINIYD---WNGGTPLLYAVRGNHVKCVEA 120
Query: 158 LVSIMNDPDFLNAKDDYGMSILHLAVA 184
L++ D L + D G + + LAVA
Sbjct: 121 LLARGAD---LTTEADSGYTPMDLAVA 144
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 44 AALRGHLHFAKEILRRT--PVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLAR 101
++L G + I+ P L + G + LH A G+ +IVK L+Q ++ A
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAA 99
Query: 102 DVDGRNPLHVAAMKGRIQVL 121
D DG PLH AA +QV
Sbjct: 100 DSDGWTPLHCAASCNNVQVC 119
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
T LH A GH K L + V DS G +PLH AA V + K L++
Sbjct: 72 TALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 44 AALRGHLHFAKEILRRT--PVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLAR 101
++L G + I+ P L + G + LH A G+ +IVK L+Q ++ A
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAA 99
Query: 102 DVDGRNPLHVAAMKGRIQVL 121
D DG PLH AA +QV
Sbjct: 100 DSDGWTPLHCAASCNNVQVC 119
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
T LH A GH K L + V DS G +PLH AA V + K L++
Sbjct: 72 TALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 139 NETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT 198
+T LHL V H L FL+ ++L+ ++D G + LHLA + T+ L
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-A 67
Query: 199 RVEVNALNTHGYTALDILAQSR 220
V G+TAL + + R
Sbjct: 68 GAGVLVAERGGHTALHLACRVR 89
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELD----SRGSSPLHMAAQKGYVDIVKELLQVN 94
TPLHVA + H E++R +L+ + G +PLH+A + +++ LL+
Sbjct: 160 TPLHVAVI----HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 95 PDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D AR GR PL A ++ +L L RA
Sbjct: 216 ADP-TARMYGGRTPLGSALLRPN-PILARLLRA 246
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
G +PLH+A ++V+ L D+ GR PLH+A VL L +A
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 139 NETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT 198
+T LHL V H L FL+ ++L+ ++D G + LHLA + T+ L
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-A 67
Query: 199 RVEVNALNTHGYTALDILAQSR 220
V G+TAL + + R
Sbjct: 68 GAGVLVAERGGHTALHLACRVR 89
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELD----SRGSSPLHMAAQKGYVDIVKELLQVN 94
TPLHVA + H E++R +L+ + G +PLH+A + +++ LL+
Sbjct: 160 TPLHVAVI----HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 95 PDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D AR GR PL A ++ +L L RA
Sbjct: 216 ADP-TARMYGGRTPLGSALLRPN-PILARLLRA 246
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
G +PLH+A ++V+ L D+ GR PLH+A VL L +A
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 41 LHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD-MCL 99
+H A +G L KE LR+ L + D RG +PL A+ G ++ V+ LL+ D L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 100 ARDVDGRNPLHVAAMKGRIQVL-VELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKF 157
A++ + + L +A+ G ++ + L R Y WN T L V N + ++
Sbjct: 66 AKERE--SALSLASTGGYTDIVGLLLERDVDINIYD---WNGGTPLLYAVHGNHVKCVEA 120
Query: 158 LVSIMNDPDFLNAKDDYGMSILHLAVA 184
L++ D L + D G + + LAVA
Sbjct: 121 LLARGAD---LTTEADSGYTPMDLAVA 144
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 168 LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215
+NAKD G + LHLA + +E + LL +VNA + G TA DI
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTAFDI 74
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 78 AAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
AA+ G D V+ L+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 9 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKG 116
D G +PLH+AA++G+++IV+ LL+ D+ A+D G+ ++ G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNG 79
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQ 92
TPLH+AA GHL E+L + D G + ++ G D+ E+LQ
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA-EILQ 88
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 71 GSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGR---IQVLVELFRA 127
G +PL +A++ G +IVK+LL++ D+ ARD+ G A + GR I++ E+ RA
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 174 YGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLR 233
YG + L ++ +E +N +L+N ++ NA G L +R++KD I +R
Sbjct: 312 YGGNPLAASIC---VEALN-VLINEKLCENAEKLGG----PFLENLKRELKDSKIVRDVR 363
Query: 234 GAGAFKAIEIQSSLNRNSTSIGRSVRNNRAVSNSIIPHDQ-LKALPQECLINLQQKNKTE 292
G G AIE ++ L N I ++ N ++ + HD+ ++ P C+ Q TE
Sbjct: 364 GKGLLCAIEFKNEL-VNVLDICLKLKENGLITRDV--HDKTIRLTPPLCITKEQLDECTE 420
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 39 TPLHVAALRGHLHFAKEILRR--TPVLAGELDSRG-SSPLHMAAQKGYVDIVKELLQVNP 95
TPL AA G + + +L+ P L G +G S L +A KGY DIVK LL
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLG----KGRESALSLACSKGYTDIVKMLLDCGV 109
Query: 96 DMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ D +G PL A ++ + L +
Sbjct: 110 DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLES 140
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 41 LHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLA 100
+H A +G + + + + V+ D G +PL AA G + +V+ LLQ D L
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 101 RDVDGR-NPLHVAAMKGRIQVLVELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKFL 158
GR + L +A KG ++ L + WN T L V N + +K L
Sbjct: 82 G--KGRESALSLACSKGYTDIVKMLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Query: 159 VSIMNDPDFLNAKDDYGMSILHLAVA 184
+ DP + D G + + LAVA
Sbjct: 138 LESGADPTI---ETDSGYNSMDLAVA 160
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 39 TPLHVAALRGHLHFAKEILRR--TPVLAGELDSRG-SSPLHMAAQKGYVDIVKELLQVNP 95
TPL AA G + + +L+ P L G +G S L +A KGY DIVK LL
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLG----KGRESALSLACSKGYTDIVKMLLDCGV 93
Query: 96 DMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ D +G PL A ++ + L +
Sbjct: 94 DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 41 LHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLA 100
+H A +G + + + + V+ D G +PL AA G + +V+ LLQ D L
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 101 RDVDGR-NPLHVAAMKGRIQVLVELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKFL 158
GR + L +A KG ++ L + WN T L V N + +K L
Sbjct: 66 G--KGRESALSLACSKGYTDIVKMLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 159 VSIMNDPDFLNAKDDYGMSILHLAVA 184
+ DP + D G + + LAVA
Sbjct: 122 LESGADPTI---ETDSGYNSMDLAVA 144
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 39 TPLHVAALRGHLHFAKEILRR--TPVLAGELDSRG-SSPLHMAAQKGYVDIVKELLQVNP 95
TPL AA G + + +L+ P L G +G S L +A KGY DIVK LL
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLG----KGRESALSLACSKGYTDIVKMLLDCGV 91
Query: 96 DMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127
D+ D +G PL A ++ + L +
Sbjct: 92 DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 41 LHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLA 100
+H A +G + + + + V+ D G +PL AA G + +V+ LLQ D L
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 101 RDVDGR-NPLHVAAMKGRIQVLVELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKFL 158
GR + L +A KG ++ L + WN T L V N + +K L
Sbjct: 64 G--KGRESALSLACSKGYTDIVKMLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Query: 159 VSIMNDPDFLNAKDDYGMSILHLAVA 184
+ DP + D G + + LAVA
Sbjct: 120 LESGADPTI---ETDSGYNSMDLAVA 142
>pdb|3H83|A Chain A, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|B Chain B, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|C Chain C, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|D Chain D, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3HVU|A Chain A, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|B Chain B, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|C Chain C, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|D Chain D, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3KB8|A Chain A, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|B Chain B, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|C Chain C, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|D Chain D, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
Length = 204
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 31 VVANRHHET-PLHVAALRGHLHFAKEILRRTPVLAGELDSRG-SSPLHMAAQKGYVDIVK 88
++A + T PL + L+G + F ++L+RT E+D SS H G V I+K
Sbjct: 50 IIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYL-EMDFMAVSSYGHSTVSTGEVKILK 108
Query: 89 ELLQVNPDMCLARDVDGRNPLHVAAMKGR---IQVLVELFRAR 128
+ L V+GR+ L V + + LV+LF+ R
Sbjct: 109 D---------LDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYR 142
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 72 SSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARP-- 129
SPL +AA++ V + +LL+ R G LH+AA+ ++ + L A P
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 130 -FAAYSTTIW-NETVLHLCV 147
F ++ ++ +T LH+ V
Sbjct: 64 VFEPMTSELYEGQTALHIAV 83
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Query: 64 AGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVE 123
A D+ G +PLH A + + + LL+ AR DG PL +AA + I+ +VE
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA-RLAIEGMVE 135
Query: 124 LFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183
+ +T LH N EA+ L+ + D A+DD + L LA
Sbjct: 136 DLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFLAA 192
Query: 184 ADKQIETINYLLVN 197
+ E LL N
Sbjct: 193 REGSYEASKALLDN 206
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
PLH+AA GHL + +++ T G + +G + +A G ++V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
PLH+AA GHL + +++ T G + +G + +A G ++V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
PLH+AA GHL + +++ T G + +G + +A G ++V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
PLH+AA GHL + +++ T G + +G + +A G ++V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN 94
PLH+AA GHL + +++ T G + +G + +A G ++V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 138 WNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH--LAVADKQIETINYL 194
+ E L L NQ +KFL+ P ++A+D G ++LH + VAD ++ ++
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 51 HFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLH 110
+ KE+ +R+ L+ P+ M + GY+ +V +L N + AR V G+N L
Sbjct: 3 YLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELI 61
Query: 111 VAAMKGRIQVLVELFRARP 129
+ A + + V+ RP
Sbjct: 62 IEAEREITEPGVKYLTQRP 80
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 51 HFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLH 110
+ KE+ +R+ L+ P+ M + GY+ +V +L N + AR V G+N L
Sbjct: 3 YLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELI 61
Query: 111 VAAMKGRIQVLVELFRARP 129
+ A + + V+ RP
Sbjct: 62 IEAEREITEPGVKYLTQRP 80
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 51 HFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLH 110
+ KE+ +R+ L+ P+ M + GY+ +V +L N + AR V G+N L
Sbjct: 3 YLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELI 61
Query: 111 VAAMKGRIQVLVELFRARP 129
+ A + + V+ RP
Sbjct: 62 IEAEREITEPGVKYLTQRP 80
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 139 NETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT 198
+ET LHL V+ +L + ++ + L+ + G + LH E + LL+
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK-LLLRG 227
Query: 199 RVEVNALNTHGYTALDI 215
+ + N G T LDI
Sbjct: 228 KASIEIANESGETPLDI 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,408,921
Number of Sequences: 62578
Number of extensions: 459356
Number of successful extensions: 1754
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 367
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)