Query 011936
Match_columns 474
No_of_seqs 415 out of 3162
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aji_A 26S proteasome non-ATPa 100.0 1.3E-38 4.6E-43 294.8 23.4 224 2-238 7-230 (231)
2 1wdy_A 2-5A-dependent ribonucl 100.0 1.8E-37 6E-42 295.7 27.4 228 2-241 40-281 (285)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 4.5E-38 1.5E-42 295.9 21.8 222 2-235 11-245 (253)
4 2dzn_A Probable 26S proteasome 100.0 1.3E-37 4.5E-42 287.4 23.2 219 2-234 3-226 (228)
5 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-37 6.6E-42 293.0 23.3 221 2-240 4-224 (261)
6 4g8k_A 2-5A-dependent ribonucl 100.0 7.2E-37 2.4E-41 300.0 26.6 229 2-240 26-300 (337)
7 1k1a_A B-cell lymphoma 3-encod 100.0 1.8E-37 6.1E-42 288.9 20.8 222 2-237 10-240 (241)
8 3b7b_A Euchromatic histone-lys 100.0 1.6E-36 5.6E-41 281.9 25.6 208 2-218 12-219 (237)
9 3d9h_A CDNA FLJ77766, highly s 100.0 6.5E-37 2.2E-41 293.3 23.3 220 2-239 60-280 (285)
10 1oy3_D Transcription factor in 100.0 4.9E-37 1.7E-41 292.7 22.1 211 2-218 10-267 (282)
11 3utm_A Tankyrase-1; tankyrase, 100.0 2.8E-36 9.7E-41 296.3 25.9 227 2-241 25-308 (351)
12 3d9h_A CDNA FLJ77766, highly s 100.0 2.6E-36 8.8E-41 289.1 24.1 227 2-241 16-250 (285)
13 4b93_B Ankyrin repeat domain-c 100.0 2.2E-37 7.4E-42 293.8 16.1 209 3-218 13-227 (269)
14 2f8y_A Notch homolog 1, transl 100.0 1.6E-36 5.4E-41 279.3 20.7 218 12-241 2-219 (223)
15 3ljn_A Hypothetical protein; a 100.0 1.6E-36 5.4E-41 300.7 22.2 227 2-241 21-272 (364)
16 3eu9_A Huntingtin-interacting 100.0 5.8E-36 2E-40 278.0 24.4 226 2-240 10-237 (240)
17 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-35 5.3E-40 282.2 27.7 226 2-240 6-247 (285)
18 1n11_A Ankyrin; clathrin, BAND 100.0 2.5E-35 8.4E-40 299.4 27.5 224 3-240 148-371 (437)
19 1s70_B 130 kDa myosin-binding 100.0 2E-36 6.9E-41 291.3 18.3 208 2-218 41-274 (299)
20 2fo1_E LIN-12 protein; beta-ba 100.0 2.9E-36 9.8E-41 300.1 19.6 225 2-239 126-372 (373)
21 1n11_A Ankyrin; clathrin, BAND 100.0 5E-35 1.7E-39 297.1 27.3 226 2-241 15-240 (437)
22 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-35 3.9E-40 279.5 18.4 203 30-241 3-218 (253)
23 1oy3_D Transcription factor in 100.0 3E-35 1E-39 280.3 21.5 201 32-241 4-253 (282)
24 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-34 3.8E-39 284.9 25.1 221 2-239 59-335 (351)
25 3b7b_A Euchromatic histone-lys 100.0 3.9E-34 1.3E-38 265.8 24.0 201 31-241 5-205 (237)
26 3hra_A Ankyrin repeat family p 100.0 7.3E-34 2.5E-38 257.1 22.8 193 35-236 3-201 (201)
27 3kea_A K1L; tropism, ANK repea 100.0 7.8E-35 2.7E-39 278.8 17.1 196 32-242 26-224 (285)
28 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-33 5.1E-38 276.4 25.7 225 2-241 60-329 (337)
29 2fo1_E LIN-12 protein; beta-ba 100.0 3.3E-35 1.1E-39 292.4 14.0 228 2-241 95-341 (373)
30 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-33 4.9E-38 262.4 24.3 200 32-241 4-211 (241)
31 2dzn_A Probable 26S proteasome 100.0 1.1E-33 3.6E-38 261.1 23.0 198 37-241 2-203 (228)
32 1ikn_D Protein (I-kappa-B-alph 100.0 6.6E-35 2.3E-39 271.1 14.6 201 32-241 3-212 (236)
33 3kea_A K1L; tropism, ANK repea 100.0 4.4E-34 1.5E-38 273.6 18.8 215 2-240 32-248 (285)
34 2rfa_A Transient receptor pote 100.0 1.2E-33 4E-38 261.8 20.9 205 2-239 4-223 (232)
35 2xai_A ASB-9, ankyrin repeat a 100.0 2E-33 6.7E-38 265.5 22.7 193 36-241 2-194 (261)
36 3aji_A 26S proteasome non-ATPa 100.0 5.2E-33 1.8E-37 257.1 23.6 197 34-240 3-199 (231)
37 2rfa_A Transient receptor pote 100.0 3.3E-33 1.1E-37 258.7 21.5 161 2-164 38-222 (232)
38 2f8y_A Notch homolog 1, transl 100.0 1.4E-32 4.8E-37 252.8 23.7 191 2-201 26-216 (223)
39 3hra_A Ankyrin repeat family p 100.0 1.2E-32 4E-37 249.1 22.2 190 2-197 6-200 (201)
40 3ljn_A Hypothetical protein; a 100.0 2.3E-33 7.9E-38 278.0 16.1 223 2-239 54-315 (364)
41 1ikn_D Protein (I-kappa-B-alph 100.0 5.9E-34 2E-38 264.7 10.4 211 2-218 9-228 (236)
42 1s70_B 130 kDa myosin-binding 100.0 1.9E-32 6.3E-37 263.6 20.7 227 7-241 4-260 (299)
43 2etb_A Transient receptor pote 100.0 4.4E-33 1.5E-37 262.1 14.3 195 37-240 2-248 (256)
44 4b93_B Ankyrin repeat domain-c 100.0 2.4E-32 8.1E-37 259.1 16.9 199 33-241 7-213 (269)
45 2pnn_A Transient receptor pote 100.0 1.1E-32 3.7E-37 262.0 14.2 209 2-212 14-270 (273)
46 2pnn_A Transient receptor pote 100.0 1.6E-32 5.5E-37 260.8 13.8 198 32-238 8-258 (273)
47 2etb_A Transient receptor pote 100.0 5.4E-32 1.8E-36 254.6 15.9 198 2-201 3-246 (256)
48 4gpm_A Engineered protein OR26 100.0 2.9E-31 9.9E-36 233.3 19.1 156 40-202 7-162 (169)
49 4gpm_A Engineered protein OR26 100.0 2.4E-31 8.3E-36 233.8 18.6 157 2-164 5-161 (169)
50 3eu9_A Huntingtin-interacting 100.0 1.4E-30 4.7E-35 241.6 21.4 200 32-241 4-205 (240)
51 3jxi_A Vanilloid receptor-rela 100.0 1.8E-31 6.1E-36 251.6 14.1 195 2-197 6-247 (260)
52 3jxi_A Vanilloid receptor-rela 100.0 1.1E-31 3.8E-36 253.0 12.7 199 34-241 2-253 (260)
53 1sw6_A Regulatory protein SWI6 100.0 9.8E-32 3.3E-36 262.4 10.5 199 4-218 100-325 (327)
54 3v30_A DNA-binding protein rfx 100.0 2.7E-30 9.3E-35 227.8 17.5 170 37-212 2-171 (172)
55 4hbd_A KN motif and ankyrin re 100.0 1.3E-30 4.3E-35 248.3 15.3 194 36-237 75-274 (276)
56 4hbd_A KN motif and ankyrin re 100.0 1.9E-30 6.5E-35 247.1 13.7 193 2-200 77-275 (276)
57 2rfm_A Putative ankyrin repeat 100.0 2.8E-29 9.5E-34 225.5 16.8 161 31-197 29-189 (192)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 4E-29 1.4E-33 217.9 17.3 156 2-163 6-161 (162)
59 3v30_A DNA-binding protein rfx 100.0 5.9E-29 2E-33 219.2 18.0 169 2-178 3-171 (172)
60 1sw6_A Regulatory protein SWI6 100.0 5.6E-30 1.9E-34 249.9 10.9 212 12-241 58-311 (327)
61 3v31_A Ankyrin repeat family A 100.0 1.3E-28 4.5E-33 215.8 17.9 156 36-197 2-157 (167)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 9.9E-29 3.4E-33 215.3 16.1 158 36-200 4-161 (162)
63 2rfm_A Putative ankyrin repeat 100.0 6E-29 2.1E-33 223.3 14.9 163 64-236 28-190 (192)
64 3f6q_A Integrin-linked protein 100.0 1.3E-28 4.3E-33 218.7 15.5 169 35-209 3-171 (179)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.6E-28 1.2E-32 213.7 17.9 159 33-197 10-168 (169)
66 2vge_A RELA-associated inhibit 100.0 4.3E-31 1.5E-35 244.4 -1.5 192 17-218 1-197 (229)
67 3v31_A Ankyrin repeat family A 100.0 3E-28 1E-32 213.5 16.4 160 70-239 2-161 (167)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 1E-27 3.4E-32 210.8 18.3 160 67-236 10-169 (169)
69 1awc_B Protein (GA binding pro 100.0 7.4E-28 2.5E-32 208.0 16.9 149 39-194 4-152 (153)
70 3twr_A Tankyrase-2; ankyrin re 100.0 2.3E-28 7.8E-33 213.9 13.4 157 34-196 5-161 (165)
71 1awc_B Protein (GA binding pro 100.0 1.9E-27 6.6E-32 205.4 17.6 150 2-158 3-152 (153)
72 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.3E-27 4.4E-32 207.0 16.4 151 3-160 4-154 (156)
73 3twr_A Tankyrase-2; ankyrin re 100.0 7.2E-28 2.5E-32 210.7 14.6 161 67-237 4-164 (165)
74 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.4E-27 8E-32 205.3 17.3 154 37-197 2-155 (156)
75 3f6q_A Integrin-linked protein 99.9 2.7E-27 9.4E-32 210.0 16.1 164 69-241 3-166 (179)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.2E-28 4E-33 229.6 3.1 179 2-187 6-193 (239)
77 2vge_A RELA-associated inhibit 99.9 1.6E-29 5.6E-34 233.8 -3.8 186 2-196 22-209 (229)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.7E-27 9.3E-32 220.3 9.6 176 35-218 3-190 (239)
79 2aja_A Ankyrin repeat family p 99.9 1.3E-28 4.3E-33 243.6 -1.9 217 2-238 93-344 (376)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 2E-25 6.8E-30 193.4 11.4 142 67-215 8-150 (156)
81 3t8k_A Uncharacterized protein 99.9 7.2E-26 2.4E-30 202.1 8.7 156 3-196 8-175 (186)
82 1d9s_A Cyclin-dependent kinase 99.9 7.9E-25 2.7E-29 185.0 12.8 130 31-164 6-136 (136)
83 3t8k_A Uncharacterized protein 99.9 1.9E-25 6.7E-30 199.3 8.8 165 37-239 6-180 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 4.1E-25 1.4E-29 191.4 10.5 143 33-182 8-151 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 1.5E-24 5.2E-29 183.3 12.3 130 65-201 6-136 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.3E-23 7.8E-28 172.8 15.9 126 36-164 1-126 (126)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 1.1E-23 3.8E-28 178.0 13.1 125 34-161 11-135 (136)
88 2aja_A Ankyrin repeat family p 99.9 1.1E-25 3.8E-30 222.5 0.6 180 5-207 69-256 (376)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.5E-23 2.2E-27 170.0 15.0 125 70-200 1-125 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 7.1E-23 2.4E-27 173.0 14.7 121 2-127 15-135 (136)
91 3deo_A Signal recognition part 99.9 5E-24 1.7E-28 189.7 5.7 111 68-184 41-152 (183)
92 3ui2_A Signal recognition part 99.9 2.9E-24 1E-28 200.4 3.4 171 36-238 14-185 (244)
93 3c5r_A BARD-1, BRCA1-associate 99.9 6.4E-23 2.2E-27 173.4 9.3 124 67-195 6-129 (137)
94 3deo_A Signal recognition part 99.9 2.1E-22 7.1E-27 179.2 12.3 141 33-197 40-181 (183)
95 3ui2_A Signal recognition part 99.9 2.7E-22 9.3E-27 187.1 12.7 140 34-197 42-182 (244)
96 3ehr_A Osteoclast-stimulating 99.9 6.7E-23 2.3E-27 188.2 8.1 140 66-210 68-207 (222)
97 2b0o_E UPLC1; arfgap, structur 99.9 2.8E-22 9.6E-27 192.8 12.8 139 69-218 149-295 (301)
98 2b0o_E UPLC1; arfgap, structur 99.9 2.3E-22 7.9E-27 193.4 11.3 144 34-188 148-299 (301)
99 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-22 5.7E-27 170.8 8.9 129 100-237 5-133 (137)
100 3aaa_C Myotrophin, protein V-1 99.9 3.9E-22 1.3E-26 165.3 9.7 109 35-146 5-113 (123)
101 3ehr_A Osteoclast-stimulating 99.9 1.9E-22 6.4E-27 185.2 8.2 137 33-172 69-206 (222)
102 3aaa_C Myotrophin, protein V-1 99.9 7.2E-22 2.5E-26 163.6 10.5 112 68-184 4-115 (123)
103 3jue_A Arfgap with coiled-coil 99.8 1.8E-20 6.1E-25 184.5 13.8 145 69-218 197-346 (368)
104 1dcq_A PYK2-associated protein 99.8 4.7E-20 1.6E-24 175.2 15.5 127 105-239 130-264 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-19 3.9E-24 142.4 11.8 90 36-127 1-90 (93)
106 3jue_A Arfgap with coiled-coil 99.8 1E-19 3.6E-24 179.0 13.7 121 39-162 201-324 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 1.5E-19 5.1E-24 186.1 15.0 127 73-205 134-269 (497)
108 1dcq_A PYK2-associated protein 99.8 4.1E-19 1.4E-23 168.7 16.5 125 69-197 128-260 (278)
109 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-19 7.5E-24 184.9 14.9 140 38-183 133-281 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.8E-19 9.7E-24 140.2 11.7 93 70-164 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 3.6E-19 1.2E-23 145.3 8.2 61 35-96 7-67 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 5.3E-19 1.8E-23 144.3 9.0 109 66-179 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 3.2E-17 1.1E-21 132.7 9.6 90 33-124 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 9.5E-17 3.3E-21 129.9 10.4 95 62-158 15-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 72.0 4.9 0.00017 38.2 5.7 189 8-196 44-238 (351)
116 3mkq_B Coatomer subunit alpha; 62.5 42 0.0014 28.3 8.9 133 38-200 9-143 (177)
117 3gvo_A Pumilio 2, pumilio homo 57.6 14 0.00049 34.9 5.8 159 32-190 104-268 (351)
118 3mkq_B Coatomer subunit alpha; 57.2 52 0.0018 27.7 8.5 132 2-161 9-140 (177)
119 1gp8_A Protein (scaffolding pr 57.2 5.1 0.00017 24.1 1.5 21 2-22 14-34 (40)
120 3k49_A MRNA-binding protein PU 56.7 12 0.00041 35.8 5.1 180 7-186 48-233 (369)
121 4ev6_A Magnesium transport pro 32.0 30 0.001 32.5 3.5 26 399-424 282-311 (339)
122 3bwt_A Protein PUF4; pumilio, 29.3 33 0.0011 32.0 3.3 146 6-153 29-183 (333)
123 2iub_A CORA, divalent cation t 28.5 34 0.0012 32.5 3.2 26 399-424 306-335 (363)
124 3k49_A MRNA-binding protein PU 27.8 30 0.001 32.9 2.7 164 32-195 37-206 (369)
125 2knc_A Integrin alpha-IIB; tra 25.4 1.5E+02 0.005 19.5 5.4 8 465-472 38-45 (54)
No 1
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.3e-38 Score=294.78 Aligned_cols=224 Identities=24% Similarity=0.327 Sum_probs=208.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
++|||.|+..|+.+.++.+++.++.. .+..+.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 83 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGG--GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhh--hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence 68999999999999999999988754 3457889999999999999999999999999877 67799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++ .+...+..|..|+||||+|+..|+.+++++|+++
T Consensus 84 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 84 GXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999998 6789999999999999999999999999 4566778889999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCc
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAF 238 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~ 238 (474)
+.+ ++.+|.+|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|.. .++.+++++|.++|++
T Consensus 162 g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 162 KAS---TNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKG----GLGLILKRLAEGEEAS 230 (231)
T ss_dssp TCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHC
T ss_pred CCC---ccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh----hHHHHHHHHHcccccc
Confidence 998 788999999999999999999999999987 99999999999999999987 6778999999988775
No 2
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-37 Score=295.69 Aligned_cols=228 Identities=24% Similarity=0.250 Sum_probs=174.3
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++++.|++.+.++ +..+.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 40 WTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVY 115 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHT
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHh
Confidence 35677777777777777777666433 345566777777777777777777777776665 55567777777777777
Q ss_pred CCHHHHHHHHhcCCCccccC----------CCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCC
Q 011936 82 GYVDIVKELLQVNPDMCLAR----------DVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ 151 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~----------d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 151 (474)
|+.+++++|+++|+++. .. +..|.||||+|+..|+.+++++|++..+...+..|..|+||||+|+..++
T Consensus 116 ~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 194 (285)
T 1wdy_A 116 GKVKALKFLYKRGANVN-LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194 (285)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred CCHHHHHHHHHhCCCcc-cccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence 77777777777776652 22 66677888888888888888888876566777777888888888888888
Q ss_pred ----HHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchH
Q 011936 152 ----FEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLD 227 (474)
Q Consensus 152 ----~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~ 227 (474)
.+++++|++.|.+ ++.+|..|+||||+|+..++.+++++|+++.|++++.+|.+|.||||+|+. .++.+
T Consensus 195 ~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~----~~~~~ 267 (285)
T 1wdy_A 195 DSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKK 267 (285)
T ss_dssp TTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH----TTCHH
T ss_pred cchHHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHH----cCcHH
Confidence 7888888888877 678888899999999999999999999986689999999999999999988 67888
Q ss_pred HHHHHHhcCCcchh
Q 011936 228 IADSLRGAGAFKAI 241 (474)
Q Consensus 228 i~~~L~~~ga~~~~ 241 (474)
++++|+++|++...
T Consensus 268 i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 268 IAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHHHSSCSCC
T ss_pred HHHHHHHcCCCCCc
Confidence 99999999988643
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.5e-38 Score=295.95 Aligned_cols=222 Identities=22% Similarity=0.196 Sum_probs=181.6
Q ss_pred chHHHHHHHcC-------------CHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccC
Q 011936 2 ESLLYEASVEG-------------NITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELD 68 (474)
Q Consensus 2 et~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d 68 (474)
.||||.|+..| +.++++.|++.++.+. ...|..|.||||+|+..|+.+++++|+++++++ +..|
T Consensus 11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~ 87 (253)
T 1yyh_A 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD 87 (253)
T ss_dssp -------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCC
Confidence 58999999987 8999999999987653 235789999999999999999999999999887 7779
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHH
Q 011936 69 SRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVK 148 (474)
Q Consensus 69 ~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 148 (474)
..|+||||+|+..|+.+++++|+++++...+.+|..|.||||+|+..|+.+++++|++ .+...+..|..|+||||+|+.
T Consensus 88 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~ 166 (253)
T 1yyh_A 88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAA 166 (253)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999985557889999999999999999999999999 566678889999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHH
Q 011936 149 HNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDI 228 (474)
Q Consensus 149 ~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i 228 (474)
.|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|++ .++.++
T Consensus 167 ~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~----~g~~~i 238 (253)
T 1yyh_A 167 VNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE----RMHHDI 238 (253)
T ss_dssp HTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHH
T ss_pred cCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHH----cCCHHH
Confidence 9999999999999998 788999999999999999999999999987 99999999999999999999 889999
Q ss_pred HHHHHhc
Q 011936 229 ADSLRGA 235 (474)
Q Consensus 229 ~~~L~~~ 235 (474)
+++|.+.
T Consensus 239 ~~~l~~~ 245 (253)
T 1yyh_A 239 VRLLDLE 245 (253)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9999854
No 4
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.3e-37 Score=287.40 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=198.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcC--CccccccCCCCchHHHHHH
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRT--PVLAGELDSRGSSPLHMAA 79 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~ 79 (474)
+||||.|+..|+.++++.|++.++... ...|..|.||||+|+..|+.+++++|++.+ ++.....|..|+||||+|+
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCcccc--ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 689999999999999999999987653 337889999999999999999999999999 6654437899999999999
Q ss_pred hcCCHHHHHHHHhcC--CCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHH
Q 011936 80 QKGYVDIVKELLQVN--PDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKF 157 (474)
Q Consensus 80 ~~g~~~iv~~LL~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 157 (474)
..|+.+++++|+++| +++ +.+|..|.||||+|+..|+.+++++|++. +...+..|..|+||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999998 666 67899999999999999999999999994 66778889999999999999999999999
Q ss_pred HHHhc-CCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHh
Q 011936 158 LVSIM-NDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRG 234 (474)
Q Consensus 158 Ll~~~-~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~ 234 (474)
|++.+ .+ ++.+|.+|+||||+|+..++.+++++|+++.|+|++.+|.+|.||+|+|.. .++.++|.+
T Consensus 159 Ll~~g~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~-------~~~~~~l~~ 226 (228)
T 2dzn_A 159 LCGLGKSA---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLN 226 (228)
T ss_dssp HHTTTCCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS-------TTHHHHHHT
T ss_pred HHhcCccc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH-------HHHHHHHHh
Confidence 99998 66 789999999999999999999999999955699999999999999999865 256666664
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=293.05 Aligned_cols=221 Identities=23% Similarity=0.247 Sum_probs=201.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++++.|++.+.++ +..|.+|.||||+|+..|+.+++++|++++.++ +..|.+|+||||+|+..
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 4 WSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 79 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 58999999999999999999998654 567889999999999999999999999999887 77899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|++.. .+.+|.||||+|+..|+.+++++|++ .+...+..|..|+||||+|+++|+.+++++|++.
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999999873 45679999999999999999999999 4566788899999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcch
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKA 240 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~ 240 (474)
|.+ ++ .|..|+||||+|+..++.+++++|++. |+|++.+|.+|+||+|+|+. +.+++++|++.+..+.
T Consensus 157 g~~---~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~------~~~~~~~ll~~~~~~~ 224 (261)
T 2xai_A 157 GAD---VN-QGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPP------ESPLAQLFLEREGPPS 224 (261)
T ss_dssp TCC---TT-CCBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCT------TCTHHHHHHHC-CCCC
T ss_pred CCC---CC-CCCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhccc------cccHHHHHHhccCCcc
Confidence 998 45 488999999999999999999999987 99999999999999999985 2358999999877654
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.2e-37 Score=299.99 Aligned_cols=229 Identities=25% Similarity=0.253 Sum_probs=204.7
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcC-CCCCCHHHHHHhcCCHHHHHHHHhcCCcc-----------------
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVAN-RHHETPLHVAALRGHLHFAKEILRRTPVL----------------- 63 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~----------------- 63 (474)
+|+||.|+++|++++|+.||+++.++ +..+ ..|+||||+|+..|+.++|++|++++++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadv---n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANV---NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence 58999999999999999999999765 3344 45999999999999999999999987653
Q ss_pred ---------------ccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccc---------cCCCCCCcHHHHHHHcCCHH
Q 011936 64 ---------------AGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCL---------ARDVDGRNPLHVAAMKGRIQ 119 (474)
Q Consensus 64 ---------------~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~---------~~d~~g~tpLh~Aa~~g~~~ 119 (474)
.+..|..|+||||+|+..|+.+++++|+++|+++.. ..+..|.||||+|+..|+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~ 182 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence 345678899999999999999999999999987632 24567999999999999999
Q ss_pred HHHHHHHhCCCcccccCCCChhHHHHHHHcCC----HHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 120 VLVELFRARPFAAYSTTIWNETVLHLCVKHNQ----FEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 120 ~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
++++|+++.+..++..|..|+|++|.++..++ .+++++|+++|++ ++.+|.+|+||||+|+..++.++++.|+
T Consensus 183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 99999987888889999999999998876554 4688999999999 7899999999999999999999999999
Q ss_pred hccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcch
Q 011936 196 VNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKA 240 (474)
Q Consensus 196 ~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~ 240 (474)
+..++++|.+|.+|+||||+|++ .++.+++++|+++|++.+
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTD 300 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSST
T ss_pred HhcCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC
Confidence 88899999999999999999999 788999999999999864
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.8e-37 Score=288.87 Aligned_cols=222 Identities=22% Similarity=0.249 Sum_probs=196.8
Q ss_pred chHHHHHHHcCCHHHHHHHHh----cCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHH
Q 011936 2 ESLLYEASVEGNITTLLQLLE----QDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHM 77 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 77 (474)
+||||.|+..|+.++++.|++ .+.. .+..|..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL 85 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence 689999999999999999997 3433 3457888999999999999999999999999887 6779999999999
Q ss_pred HHhcCCHHHHHHHHhcCC----CccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCChhHHHHHHHcCCH
Q 011936 78 AAQKGYVDIVKELLQVNP----DMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTT-IWNETVLHLCVKHNQF 152 (474)
Q Consensus 78 A~~~g~~~iv~~LL~~~~----~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~ 152 (474)
|+..|+.+++++|+++++ ++ ...|..|.||||+|+..|+.+++++|++.+. ..+..+ ..|+||||+|+++|+.
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGA-DIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCC-CcccccccCCCcHHHHHHHcCCH
Confidence 999999999999999987 44 6788999999999999999999999999554 455555 7899999999999999
Q ss_pred HHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHH
Q 011936 153 EALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSL 232 (474)
Q Consensus 153 ~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L 232 (474)
+++++|+++|.+ ++.+|.+|+||||+|+..++.+++++|+++ |+|++.+|..|.||+|+|+. .+..++++.|
T Consensus 164 ~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~i~~~l 235 (241)
T 1k1a_A 164 SMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS----RRVIDILRGK 235 (241)
T ss_dssp HHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS----HHHHHHHTC-
T ss_pred HHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHh----cCcHHHHhhh
Confidence 999999999998 789999999999999999999999999986 99999999999999999988 6788888888
Q ss_pred HhcCC
Q 011936 233 RGAGA 237 (474)
Q Consensus 233 ~~~ga 237 (474)
.+.++
T Consensus 236 ~~~~a 240 (241)
T 1k1a_A 236 ATRPA 240 (241)
T ss_dssp -----
T ss_pred ccCCC
Confidence 76554
No 8
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.6e-36 Score=281.86 Aligned_cols=208 Identities=23% Similarity=0.269 Sum_probs=193.8
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++++.+. +..|..|.||||+|+..
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHc
Confidence 58999999999999999999998754 456888999999999999999999999999877 67799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++++...+..|..|.||||+|+..|+.+++++|++ .+...+..|..|.||||+|+..|+.+++++|++.
T Consensus 88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166 (237)
T ss_dssp TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999999954447889999999999999999999999999 4556778899999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHh
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQ 218 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~ 218 (474)
|.+ ++.+|..|+||||+|+..++.+++++|+++ |+|++.+|++|.||+|+|+.
T Consensus 167 g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 167 KCD---LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp TCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCT
T ss_pred CCC---CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Confidence 998 788999999999999999999999999977 99999999999999999988
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=293.30 Aligned_cols=220 Identities=25% Similarity=0.265 Sum_probs=198.3
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++++.|++.+.++ +..|.+|+||||+|+..|+.+++++|++.++++ +..|.+|+||||+|+..
T Consensus 60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~ 135 (285)
T 3d9h_A 60 WSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 135 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCS---CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 58999999999999999999998654 567889999999999999999999999999887 77899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++. .+.+|.||||+|+..|+.+++++|++ .+...+..|.+|+||||+|+.+|+.+++++|++.
T Consensus 136 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 136 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 99999999999999873 35569999999999999999999999 4556788899999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhc-CCcc
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGA-GAFK 239 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~-ga~~ 239 (474)
|.+ ++ .|..|+||||+|+..++.+++++|+++ |+|++.+|.+|+||+|+|+. +.+++++|+++ |++.
T Consensus 213 ga~---~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~------~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 213 GAD---VN-QGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVPP------ESPLAQLFLEREGASL 280 (285)
T ss_dssp TCC---TT-CCBTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCT------TSHHHHHHHHHC----
T ss_pred CCC---CC-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhcC------ccHHHHHHHHhhccCC
Confidence 988 45 489999999999999999999999986 99999999999999999984 34789999987 6654
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.9e-37 Score=292.69 Aligned_cols=211 Identities=20% Similarity=0.138 Sum_probs=172.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+||||.|+..|+.++++.|++.+......+..+..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~ 88 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRV 88 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTT
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 68999999999999999999987654334567889999999999999999999999999887 67799999999999999
Q ss_pred CCHHHHHHHHhcCCCc----------------------------------------------cccCCCCCCcHHHHHHHc
Q 011936 82 GYVDIVKELLQVNPDM----------------------------------------------CLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~----------------------------------------------~~~~d~~g~tpLh~Aa~~ 115 (474)
|+.+++++|++++++. .+.+|..|.||||+|+..
T Consensus 89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 168 (282)
T 1oy3_D 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168 (282)
T ss_dssp TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT
T ss_pred CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHc
Confidence 9999999999987652 245677889999999999
Q ss_pred CCHHHHHHHHHhCCCcccccC-CCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHh
Q 011936 116 GRIQVLVELFRARPFAAYSTT-IWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYL 194 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~L 194 (474)
|+.+++++|++.+.+ .+..+ ..|+||||+|+++|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|
T Consensus 169 g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~L 244 (282)
T 1oy3_D 169 KDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLL 244 (282)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHHHHHH
Confidence 999999999985544 44444 4589999999999999999999998888 688888999999999999999999988
Q ss_pred hhccccccccccCCCCCHHHHHHh
Q 011936 195 LVNTRVEVNALNTHGYTALDILAQ 218 (474)
Q Consensus 195 l~~~~~d~n~~n~~g~Tpl~~a~~ 218 (474)
+++ |++++.+|.+|.||+++|..
T Consensus 245 l~~-ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 245 RAH-GAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp HHT-TCCCCCCC------------
T ss_pred HHc-CCCcCcCCCcccccccccCC
Confidence 876 89999999999999998876
No 11
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.8e-36 Score=296.33 Aligned_cols=227 Identities=26% Similarity=0.285 Sum_probs=205.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+++||.|+..|+.+.++.++...+ .+.+..|..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLN--VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTT--TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHC
Confidence 479999999999999999998743 233557889999999999999999999999999887 77899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccc---------------------------
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYS--------------------------- 134 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~--------------------------- 134 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+ ...
T Consensus 102 g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~ 179 (351)
T 3utm_A 102 GHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKG 179 (351)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcc
Confidence 9999999999999998 67899999999999999999999999995433 222
Q ss_pred ---------------------------cCCCChhHHHHHHHc---CCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHh
Q 011936 135 ---------------------------TTIWNETVLHLCVKH---NQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVA 184 (474)
Q Consensus 135 ---------------------------~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~ 184 (474)
.+..|+||||+|+.. +..+++++|++.+.+ ++.+|.+|+||||+|+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~ 256 (351)
T 3utm_A 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAAE 256 (351)
T ss_dssp HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHH
T ss_pred cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHH
Confidence 345678999999999 558999999999998 78999999999999999
Q ss_pred cCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 185 DKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 185 ~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
.|+.+++++|+++ |+++|.+|..|.||||+|+. .++.+++++|+++|++...
T Consensus 257 ~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~ 308 (351)
T 3utm_A 257 RAHNDVMEVLHKH-GAKMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSI 308 (351)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred cCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCC
Confidence 9999999999977 99999999999999999999 7889999999999998654
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=289.11 Aligned_cols=227 Identities=19% Similarity=0.167 Sum_probs=182.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCcc--------chhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCch
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPL--------ILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSS 73 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 73 (474)
+|+||.|+..|+.+.+..++..++. ....+..|..|+||||+|+..|+.+++++|++.+.++ +..|.+|+|
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t 94 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVS 94 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCC
Confidence 6899999999999888887765432 1112346788999999999999999999999999886 778999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHH
Q 011936 74 PLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFE 153 (474)
Q Consensus 74 pLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 153 (474)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.. .+. +.+|.||||+|+..|+.+
T Consensus 95 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~ 171 (285)
T 3d9h_A 95 PLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVE 171 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHH
T ss_pred HHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHH
Confidence 999999999999999999999998 77899999999999999999999999996544 332 455999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHH
Q 011936 154 ALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLR 233 (474)
Q Consensus 154 ~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~ 233 (474)
++++|++.+.+ ++.+|.+|+||||+|+..++.+++++|++. |++++. |..|.||||+|+. .++.+++++|+
T Consensus 172 ~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll 242 (285)
T 3d9h_A 172 CVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSPLHAVVR----TASEELACLLM 242 (285)
T ss_dssp HHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CBTTBCHHHHHHH----TTCHHHHHHHH
T ss_pred HHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCCC-CCCCCCHHHHHHH----cCCHHHHHHHH
Confidence 99999999998 789999999999999999999999999987 899995 8999999999999 78899999999
Q ss_pred hcCCcchh
Q 011936 234 GAGAFKAI 241 (474)
Q Consensus 234 ~~ga~~~~ 241 (474)
++|++...
T Consensus 243 ~~gad~~~ 250 (285)
T 3d9h_A 243 DFGADTQA 250 (285)
T ss_dssp HTTCCTTC
T ss_pred HCCCCCCC
Confidence 99998653
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=293.84 Aligned_cols=209 Identities=26% Similarity=0.310 Sum_probs=166.3
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCccchh-----hhhcCCCCCCHHHHHHhcCCH-HHHHHHHhcCCccccccCCCCchHHH
Q 011936 3 SLLYEASVEGNITTLLQLLEQDPLILD-----KVVANRHHETPLHVAALRGHL-HFAKEILRRTPVLAGELDSRGSSPLH 76 (474)
Q Consensus 3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~~g~t~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh 76 (474)
++|+.||..|+.++|+.||+.+..... .+..+..|.||||.|+..++. .+++.|++.|.++ +..|.+|+||||
T Consensus 13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh 91 (269)
T 4b93_B 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLH 91 (269)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence 689999999999999999998764321 234567799999999998876 4889999999887 788999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHH
Q 011936 77 MAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALK 156 (474)
Q Consensus 77 ~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 156 (474)
+|+..|+.+++++|++.++++ ..++.+|.||+|.|+..++.++++.|++ .+..++..|..|+||||+|+++|+.++++
T Consensus 92 ~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v~ 169 (269)
T 4b93_B 92 VAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVA 169 (269)
T ss_dssp HHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCGGGHH
T ss_pred HHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 999999999999999999998 7789999999999999999999999999 45667888999999999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHh
Q 011936 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQ 218 (474)
Q Consensus 157 ~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~ 218 (474)
+|+++|++ +|.+|.+|+||||+|+..|+.+++++|+++ |+|+|.+|++|+||||+|++
T Consensus 170 ~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 170 LLLQHGAS---INASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp HHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCT
T ss_pred HHHHCCCC---CCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHh
Confidence 99999999 789999999999999999999999999986 99999999999999999976
No 14
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-36 Score=279.30 Aligned_cols=218 Identities=21% Similarity=0.190 Sum_probs=198.5
Q ss_pred CCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHH
Q 011936 12 GNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELL 91 (474)
Q Consensus 12 g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL 91 (474)
|+.++++.|+++++++. ...|.+|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~g~~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcc--cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 67888999999987653 235788999999999999999999999999887 677999999999999999999999999
Q ss_pred hcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCccccc
Q 011936 92 QVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAK 171 (474)
Q Consensus 92 ~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~ 171 (474)
++++.....++..|.||||+|+..|+.+++++|++ .+...+..|..|+||||+|+..|+.+++++|+++|.+ ++.+
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~ 154 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQ 154 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCC
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCc
Confidence 99985557889999999999999999999999999 5566778899999999999999999999999999988 7889
Q ss_pred CCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 172 DDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 172 d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
|..|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|+. .++.+++++|+++|+....
T Consensus 155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 155 NNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSCC
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCccc
Confidence 99999999999999999999999987 89999999999999999999 7889999999999998654
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.6e-36 Score=300.74 Aligned_cols=227 Identities=19% Similarity=0.174 Sum_probs=206.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++|+.|++.+.++ +..|..|.||||+|+..|+.+++++|++.+++. .+.+|.||||+|+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHc
Confidence 48999999999999999999998654 567899999999999999999999999999854 245899999999999
Q ss_pred CCHHHHHHHHhc----CCCcccc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCcccccCCC
Q 011936 82 GYVDIVKELLQV----NPDMCLA-----------------RDVDGRNPLHVAAMKG--RIQVLVELFRARPFAAYSTTIW 138 (474)
Q Consensus 82 g~~~iv~~LL~~----~~~~~~~-----------------~d~~g~tpLh~Aa~~g--~~~~~~~Ll~~~~~~~~~~d~~ 138 (474)
|+.+++++|+++ +.+. .. +|..|.||||+|+..| +.+++++|++. +...+..|..
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~ 172 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKA 172 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTT
T ss_pred CCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCC
Confidence 999999999998 6665 33 7788999999999999 99999999996 5667888999
Q ss_pred ChhHHHHHHHcCCHHHHHHHHHhcCCC--CcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHH
Q 011936 139 NETVLHLCVKHNQFEALKFLVSIMNDP--DFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDIL 216 (474)
Q Consensus 139 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a 216 (474)
|+||||+|+.+|+.+++++|++++++. ..++.+|..|+||||+|+..|+.+++++|+++ |+|+|..|.+|.||||+|
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999998762 12688999999999999999999999999986 999999999999999999
Q ss_pred HhccCCCCchHHHHHHHhcCCcchh
Q 011936 217 AQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 217 ~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+. .++.+++++|+++|++...
T Consensus 252 ~~----~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 252 VR----AAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp HH----TCCHHHHHHHHHHSCHHHH
T ss_pred HH----hChHHHHHHHHHcCCchhh
Confidence 99 7899999999999988643
No 16
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=277.97 Aligned_cols=226 Identities=22% Similarity=0.244 Sum_probs=205.4
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+++|+.|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++++++.....+..|+||||+|+..
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred chHHHHHHHcCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 57999999999999999999998654 456889999999999999999999999999988767677799999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCC-HHHHHHHHH
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ-FEALKFLVS 160 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~ 160 (474)
|+.+++++|+++|+++ ..+|..|.||||.|+..|+.+++++|++. +...+..+..|.||||+|+..++ .+++++|++
T Consensus 87 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~ 164 (240)
T 3eu9_A 87 GHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164 (240)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence 9999999999999988 67899999999999999999999999994 55677889999999999997776 899999999
Q ss_pred hcCCCCcccccCC-CCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcc
Q 011936 161 IMNDPDFLNAKDD-YGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 161 ~~~~~~l~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~ 239 (474)
.+.+ ++..+. .|+||||+|+..++.+++++|+++ |++++..|..|.||+|+|++ .++.+++++|+++|+..
T Consensus 165 ~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 165 FNVS---VNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAK 236 (240)
T ss_dssp TTCC---TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC---
T ss_pred cCCC---cchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhcc
Confidence 9988 677776 899999999999999999999987 89999999999999999999 78999999999998875
Q ss_pred h
Q 011936 240 A 240 (474)
Q Consensus 240 ~ 240 (474)
.
T Consensus 237 ~ 237 (240)
T 3eu9_A 237 G 237 (240)
T ss_dssp -
T ss_pred C
Confidence 3
No 17
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-35 Score=282.22 Aligned_cols=226 Identities=23% Similarity=0.231 Sum_probs=205.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+|+|+.|+..|+.++++.|++.++++.. ..+..|.||||+|+..|+.+++++|++++++. +..|.+|.||||+|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNF--QEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHc
Confidence 5899999999999999999999876521 23678999999999999999999999999887 67799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCccccc----------CCCChhHHHHHHHcCC
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYST----------TIWNETVLHLCVKHNQ 151 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~----------d~~g~t~Lh~A~~~~~ 151 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.. .+.. +..|.||||+|+..|+
T Consensus 83 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp TCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence 9999999999999998 67899999999999999999999999996543 3333 7789999999999999
Q ss_pred HHHHHHHHHh-cCCCCcccccCCCCCcHHHHHHhcCC----hHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCch
Q 011936 152 FEALKFLVSI-MNDPDFLNAKDDYGMSILHLAVADKQ----IETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDL 226 (474)
Q Consensus 152 ~~~v~~Ll~~-~~~~~l~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~ 226 (474)
.+++++|++. +.+ ++.+|..|+||||+|+..++ .+++++|+++ |++++.+|..|.||||+|+. .++.
T Consensus 161 ~~~v~~Ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~ 232 (285)
T 1wdy_A 161 VEVLKILLDEMGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVE----KKHL 232 (285)
T ss_dssp HHHHHHHHHTSCCC---TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHH----TTCH
T ss_pred HHHHHHHHHhcCCC---CCccCCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHH----cCCH
Confidence 9999999987 777 78899999999999999999 8999999976 99999999999999999999 7889
Q ss_pred HHHHHHHh-cCCcch
Q 011936 227 DIADSLRG-AGAFKA 240 (474)
Q Consensus 227 ~i~~~L~~-~ga~~~ 240 (474)
+++++|++ .|++..
T Consensus 233 ~~v~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 233 GLVQRLLEQEHIEIN 247 (285)
T ss_dssp HHHHHHHHSSSCCTT
T ss_pred HHHHHHHhccCCCcc
Confidence 99999998 788754
No 18
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-35 Score=299.40 Aligned_cols=224 Identities=29% Similarity=0.345 Sum_probs=171.3
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcC
Q 011936 3 SLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKG 82 (474)
Q Consensus 3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 82 (474)
||||.|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++++.+. +..+.+|.||||+|+..|
T Consensus 148 t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 223 (437)
T 1n11_A 148 TPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN 223 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 5666666666666666666665433 345566777777777777777777777776665 455667777777777777
Q ss_pred CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhc
Q 011936 83 YVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIM 162 (474)
Q Consensus 83 ~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 162 (474)
+.+++++|+++|++. +.++..|.||||+|+..|+.+++++|++. +...+..+..|+||||+|++.|+.+++++|++++
T Consensus 224 ~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 301 (437)
T 1n11_A 224 QVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301 (437)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 777777777777766 56677788888888888888888888873 4455667778888888888888888888888888
Q ss_pred CCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcch
Q 011936 163 NDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKA 240 (474)
Q Consensus 163 ~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~ 240 (474)
.+ ++.+|..|+||||+|+..|+.+++++|+++ |+|+|.+|..|.||||+|+. .++.+++++|+++|++..
T Consensus 302 ~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 302 VM---VDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp CC---TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred cc---CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCC
Confidence 77 678888888999999888888888888876 88888888888999998888 677888999988888764
No 19
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2e-36 Score=291.34 Aligned_cols=208 Identities=27% Similarity=0.351 Sum_probs=190.6
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+|||+.||..|+.++++.|++.+.++ +..|.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~ 116 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC 116 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHc
Confidence 48999999999999999999998754 557889999999999999999999999999887 77799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcc--------------------------ccc
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAA--------------------------YST 135 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~--------------------------~~~ 135 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++++.++...+... ...
T Consensus 117 g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (299)
T 1s70_B 117 GYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195 (299)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred CCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence 9999999999999998 6789999999999999999999998876544332 235
Q ss_pred CCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHH
Q 011936 136 TIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215 (474)
Q Consensus 136 d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~ 215 (474)
+..|.||||+|+.+|+.+++++|++.|.+ ++.+|.+|+||||+|+..|+.+++++|+++ |+|++.+|..|.||+|+
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~ 271 (299)
T 1s70_B 196 AKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDV 271 (299)
T ss_dssp TTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTS
T ss_pred cCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHH
Confidence 67899999999999999999999999998 789999999999999999999999999987 99999999999999999
Q ss_pred HHh
Q 011936 216 LAQ 218 (474)
Q Consensus 216 a~~ 218 (474)
|.+
T Consensus 272 A~~ 274 (299)
T 1s70_B 272 ADE 274 (299)
T ss_dssp CCS
T ss_pred HHH
Confidence 965
No 20
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-36 Score=300.05 Aligned_cols=225 Identities=18% Similarity=0.231 Sum_probs=201.2
Q ss_pred chHHHHHHHcCCHHHHHHHH--------hcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCch
Q 011936 2 ESLLYEASVEGNITTLLQLL--------EQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSS 73 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 73 (474)
+||||.|+..|+.++++.|+ +.+.++ +..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.|
T Consensus 126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t 201 (373)
T 2fo1_E 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERS 201 (373)
T ss_dssp CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCC
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC---cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCC
Confidence 58999999999998888776 566543 567889999999999999999999999999887 677999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcC---CCccccCCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCccc-------ccCCCCh
Q 011936 74 PLHMAAQKGYVDIVKELLQVN---PDMCLARDVDGRNPLHVAAMKG---RIQVLVELFRARPFAAY-------STTIWNE 140 (474)
Q Consensus 74 pLh~A~~~g~~~iv~~LL~~~---~~~~~~~d~~g~tpLh~Aa~~g---~~~~~~~Ll~~~~~~~~-------~~d~~g~ 140 (474)
|||+|+..|+.+++++|++++ .++ +..|..|.||||+|+..| +.+++++|++.+.+... ..|..|+
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~ 280 (373)
T 2fo1_E 202 ALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCC
Confidence 999999999999999999987 565 678999999999999998 89999999996554321 3577899
Q ss_pred hHHHHHHHcCCHHHHHHHHHhc-CCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhc
Q 011936 141 TVLHLCVKHNQFEALKFLVSIM-NDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQS 219 (474)
Q Consensus 141 t~Lh~A~~~~~~~~v~~Ll~~~-~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~ 219 (474)
||||+|+++|+.+++++|++.+ .+ ++.+|.+|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+.
T Consensus 281 t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~- 355 (373)
T 2fo1_E 281 TALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQA- 355 (373)
T ss_dssp CTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHH-
T ss_pred CHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHH-
Confidence 9999999999999999999886 66 789999999999999999999999999987 99999999999999999999
Q ss_pred cCCCCchHHHHHHHhcCCcc
Q 011936 220 RRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 220 ~~~~~~~~i~~~L~~~ga~~ 239 (474)
.++.+++++|+++|++.
T Consensus 356 ---~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 356 ---NNHHNIVDIFDRCRPER 372 (373)
T ss_dssp ---TTCHHHHHHHHTTC---
T ss_pred ---cCCHHHHHHHHhcCccc
Confidence 78899999999998864
No 21
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5e-35 Score=297.13 Aligned_cols=226 Identities=28% Similarity=0.370 Sum_probs=208.2
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++|+.|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +..|.+|+||||+|+..
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHC
Confidence 58999999999999999999998654 456888999999999999999999999999887 77799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +......+..|.||||+|+++|+.+++++|++.
T Consensus 91 g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 91 GHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 9999999999999998 67899999999999999999999999995 445566788999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+.+ ++..|..|.||||+|+..++.+++++|+++ +.+++..+.+|.||||+|+. .++.+++++|+++|++...
T Consensus 169 g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~g~~~~~ 240 (437)
T 1n11_A 169 DAH---PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAK----QNQVEVARSLLQYGGSANA 240 (437)
T ss_dssp TCC---TTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred CCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence 988 688899999999999999999999999976 88999999999999999999 7889999999999987643
No 22
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-35 Score=279.48 Aligned_cols=203 Identities=28% Similarity=0.274 Sum_probs=158.6
Q ss_pred hhhcCCCCCCHHHHHHhcC-------------CHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCC
Q 011936 30 KVVANRHHETPLHVAALRG-------------HLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD 96 (474)
Q Consensus 30 ~~~~~~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~ 96 (474)
.+..|.+|.||||+|+..| +.++++.|++++++.....|..|+||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3567889999999999987 899999999999998777899999999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCC
Q 011936 97 MCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGM 176 (474)
Q Consensus 97 ~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~ 176 (474)
+ +.+|..|+||||+|+..|+.+++++|++.++...+..+..|+||||+|+..|+.+++++|++.|.+ ++.+|.+|+
T Consensus 83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~ 158 (253)
T 1yyh_A 83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGK 158 (253)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTSC
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCCC
Confidence 8 778999999999999999999999999987778888899999999999999999999999999998 789999999
Q ss_pred cHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 177 SILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 177 t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
||||+|+..++.+++++|+++ |++++..|..|.||||+|+. .++.+++++|+++|++...
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~ 218 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDI 218 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCccc
Confidence 999999999999999999987 99999999999999999999 7788999999999998653
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3e-35 Score=280.31 Aligned_cols=201 Identities=25% Similarity=0.282 Sum_probs=184.3
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhcCCc--cccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHH
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRRTPV--LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPL 109 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpL 109 (474)
..|.+|+||||+|+..|+.+++++|++.+++ ..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL 82 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL 82 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 4688999999999999999999999998876 25778999999999999999999999999999998 68899999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCC----------------------------------------------cccccCCCChhHH
Q 011936 110 HVAAMKGRIQVLVELFRARPF----------------------------------------------AAYSTTIWNETVL 143 (474)
Q Consensus 110 h~Aa~~g~~~~~~~Ll~~~~~----------------------------------------------~~~~~d~~g~t~L 143 (474)
|+|+..|+.+++++|++.++. ..+..+..|+|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 999999999999999985543 2455688899999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcccccCC-CCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCC
Q 011936 144 HLCVKHNQFEALKFLVSIMNDPDFLNAKDD-YGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRD 222 (474)
Q Consensus 144 h~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~ 222 (474)
|+|+.+|+.+++++|+++|.+ ++.++. .|+||||+|+..++.+++++|+++ |++++.+|..|.||||+|+.
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~---- 234 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALL---- 234 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHT----
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHH----
Confidence 999999999999999999998 677775 499999999999999999999987 99999999999999999999
Q ss_pred CCchHHHHHHHhcCCcchh
Q 011936 223 IKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 223 ~~~~~i~~~L~~~ga~~~~ 241 (474)
.++.+++++|+++|++...
T Consensus 235 ~~~~~~v~~Ll~~ga~~~~ 253 (282)
T 1oy3_D 235 RPNPILARLLRAHGAPEPE 253 (282)
T ss_dssp SSCHHHHHHHHHTTCCCCC
T ss_pred cCCcHHHHHHHHcCCCcCc
Confidence 7889999999999998754
No 24
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=284.94 Aligned_cols=221 Identities=22% Similarity=0.270 Sum_probs=196.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 134 (351)
T 3utm_A 59 STPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASK 134 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 58999999999999999999998754 557889999999999999999999999999887 67799999999999999
Q ss_pred CCHHHHHHHHhcCCCccc-----------------------------------------------------cCCCCCCcH
Q 011936 82 GYVDIVKELLQVNPDMCL-----------------------------------------------------ARDVDGRNP 108 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~-----------------------------------------------------~~d~~g~tp 108 (474)
|+.+++++|+++|+++.. ..+..|.||
T Consensus 135 ~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~ 214 (351)
T 3utm_A 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCH
T ss_pred CCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCH
Confidence 999999999999887521 234678899
Q ss_pred HHHHHHc---CCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhc
Q 011936 109 LHVAAMK---GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185 (474)
Q Consensus 109 Lh~Aa~~---g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~ 185 (474)
||+|+.. +..+++++|++ .+...+..|.+|+||||+|+++|+.+++++|+++|.+ ++.+|..|+||||+|+..
T Consensus 215 L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 215 LHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALA 290 (351)
T ss_dssp HHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHc
Confidence 9999999 55899999999 5566788899999999999999999999999999999 789999999999999999
Q ss_pred CChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcc
Q 011936 186 KQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 186 ~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~ 239 (474)
|+.+++++|+++ |+|++..|..|.||+++|.. +++++|.+.+...
T Consensus 291 ~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a~~--------~~~~~l~~~~~~~ 335 (351)
T 3utm_A 291 GHLQTCRLLLSY-GSDPSIISLQGFTAAQMGNE--------AVQQILSESTPMR 335 (351)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHSCH--------HHHHHHHHC----
T ss_pred CcHHHHHHHHHc-CCCCCCcCCCCCChhhhhhH--------HHHHHHHhccccc
Confidence 999999999987 99999999999999998744 7888888776543
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.9e-34 Score=265.77 Aligned_cols=201 Identities=22% Similarity=0.302 Sum_probs=189.4
Q ss_pred hhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHH
Q 011936 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLH 110 (474)
Q Consensus 31 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh 110 (474)
...|.+|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 82 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLH 82 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHH
Confidence 456889999999999999999999999999887 677999999999999999999999999999987 678999999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHH
Q 011936 111 VAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIET 190 (474)
Q Consensus 111 ~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~i 190 (474)
+|+..|+.+++++|++.++...+..+..|+||||+|+..++.+++++|++.|.+ ++.+|.+|+||||+|+..|+.++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHCCCHHH
Confidence 999999999999999987788888999999999999999999999999999998 78899999999999999999999
Q ss_pred HHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 191 INYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 191 v~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+++|++. |++++..|..|.||||+|+. .++.+++++|+++|++...
T Consensus 160 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~ 205 (237)
T 3b7b_A 160 AEILLAA-KCDLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVTL 205 (237)
T ss_dssp HHHHHTT-TCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTC
T ss_pred HHHHHHc-CCCCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCCc
Confidence 9999977 89999999999999999999 7889999999999998653
No 26
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=7.3e-34 Score=257.06 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=168.5
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 011936 35 RHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAM 114 (474)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~ 114 (474)
..+.||||.|+..|+.+.++.|++.++...+..|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 467889999999999999999998888555778888999999999999999999999998887 6788889999999999
Q ss_pred cCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhc-CCCCcccccCCCCCcHHHHHHhcCC-----h
Q 011936 115 KGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIM-NDPDFLNAKDDYGMSILHLAVADKQ-----I 188 (474)
Q Consensus 115 ~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~-~~~~l~~~~d~~g~t~Lh~A~~~~~-----~ 188 (474)
.|+.+++++|++..+...+..|..|.||||+|+.+|+.+++++|++.+ .+ ++.+|.+|+||||+|+..++ .
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhHH
Confidence 999999999997777778888888999999999999999999999888 66 78888899999999998887 8
Q ss_pred HHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcC
Q 011936 189 ETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAG 236 (474)
Q Consensus 189 ~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~g 236 (474)
+++++|+++ |++++.+|..|.||+|+|+. .++.+++++|+++|
T Consensus 159 ~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 159 DIVKLLMEN-GADQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred HHHHHHHHC-CCCCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence 889988876 89999999999999999988 67888999998876
No 27
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.8e-35 Score=278.83 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=104.1
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHH
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHV 111 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~ 111 (474)
..|.+|+||||+|+..|+.+++++|+++++++ +.. +|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~ 101 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYY 101 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHH
Confidence 34555555555555555555555555555444 222 3555555555555555555555555554 3455555555555
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccCCCC-hhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCC-CCCcHHHHHHhcCChH
Q 011936 112 AAMKGRIQVLVELFRARPFAAYSTTIWN-ETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDD-YGMSILHLAVADKQIE 189 (474)
Q Consensus 112 Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~-~g~t~Lh~A~~~~~~~ 189 (474)
|+..|+.+++++|++. +...+..|..| .||||+|+..|+.+++++|++++.+. .|. .|.||||+|+..|+.+
T Consensus 102 A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-----CCCSTHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-----ccccCCccHHHHHHHcChHH
Confidence 5555555555555553 33344445555 45555555555555555555555431 111 4555555555555555
Q ss_pred HHHHhhhccccccccccCCCCCH-HHHHHhccCCCCchHHHHHHHhcCCcchhc
Q 011936 190 TINYLLVNTRVEVNALNTHGYTA-LDILAQSRRDIKDLDIADSLRGAGAFKAIE 242 (474)
Q Consensus 190 iv~~Ll~~~~~d~n~~n~~g~Tp-l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~ 242 (474)
++++|+++ |+++|..|..|.|| ||+|+. .++.+++++|+++|++....
T Consensus 176 ~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 176 MMILLLDY-MTSTNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHH-HHHTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTTT
T ss_pred HHHHHHHc-CCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence 55555544 55555555555554 555555 44455555555555555443
No 28
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-33 Score=276.35 Aligned_cols=225 Identities=22% Similarity=0.164 Sum_probs=193.6
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccch------------------------------hhhhcCCCCCCHHHHHHhcCCHH
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLIL------------------------------DKVVANRHHETPLHVAALRGHLH 51 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~------------------------------~~~~~~~~g~t~Lh~Aa~~g~~~ 51 (474)
.||||.|+..|+.++|+.|++.+..+. +.+..|..|.||||+|+..|+.+
T Consensus 60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~ 139 (337)
T 4g8k_A 60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 139 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHH
Confidence 489999999999999999999876432 22346778999999999999999
Q ss_pred HHHHHHhcCCccc---------cccCCCCchHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHHHHHcCC----
Q 011936 52 FAKEILRRTPVLA---------GELDSRGSSPLHMAAQKGYVDIVKELLQV-NPDMCLARDVDGRNPLHVAAMKGR---- 117 (474)
Q Consensus 52 ~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~iv~~LL~~-~~~~~~~~d~~g~tpLh~Aa~~g~---- 117 (474)
+++.|+++++++. ...+..|.||||+|+..|+.+++++||++ |+++ +.+|..|.||+|.++..++
T Consensus 140 ~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~ 218 (337)
T 4g8k_A 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDV 218 (337)
T ss_dssp HHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTH
T ss_pred HHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccH
Confidence 9999999987652 23356799999999999999999999974 7777 7889999999999887654
Q ss_pred HHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh-cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhh
Q 011936 118 IQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI-MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196 (474)
Q Consensus 118 ~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 196 (474)
.+++++|++ .+..++.+|.+|+||||+|++.|+.++++.|++. +.+ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus 219 ~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 294 (337)
T 4g8k_A 219 EAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCK 294 (337)
T ss_dssp HHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 356777777 5667888899999999999999999999999985 566 89999999999999999999999999998
Q ss_pred ccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 197 NTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 197 ~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+ |+|+|. .+||++|+. .++.+++++|+++||+.+.
T Consensus 295 ~-GAd~n~-----~~~L~~A~~----~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 295 R-GASTDC-----GDLVMTARR----NYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp T-SCSSTT-----CCHHHHHHH----TTCHHHHHHHHHTTCCC--
T ss_pred C-CCCCCC-----CCHHHHHHH----cCCHHHHHHHHHCcCCCCC
Confidence 7 898875 469999999 7789999999999998754
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-35 Score=292.42 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=200.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcC-CCCCCHHHHHHhcCCHHHHHHHH--------hcCCccccccCCCCc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVAN-RHHETPLHVAALRGHLHFAKEIL--------RRTPVLAGELDSRGS 72 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~ 72 (474)
+||||.|+..|+ ++++.|+..+. +..| ..|+||||+|+..|+.+++++|+ +.+.++ +..|.+|+
T Consensus 95 ~t~L~~Aa~~~~-~~~~~L~~~~~-----n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~ 167 (373)
T 2fo1_E 95 PIKLHTEAAGSY-AITEPITRESV-----NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDEN 167 (373)
T ss_dssp CCHHHHHHHSSS-CCCSCCSTTTT-----TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSC
T ss_pred ccHHHHHhcCCc-hHHHHhccccc-----cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCC
Confidence 589999999664 77777765432 3355 68999999999999998888776 677776 77899999
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCC--CcccccCCCChhHHHHHHHcC
Q 011936 73 SPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARP--FAAYSTTIWNETVLHLCVKHN 150 (474)
Q Consensus 73 tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~~ 150 (474)
||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++... ...+..|.+|+||||+|+..+
T Consensus 168 TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~ 246 (373)
T 2fo1_E 168 TPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246 (373)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred CHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence 9999999999999999999999998 6789999999999999999999999998542 567778999999999999998
Q ss_pred ---CHHHHHHHHHhcCCCCc-----ccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCC
Q 011936 151 ---QFEALKFLVSIMNDPDF-----LNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRD 222 (474)
Q Consensus 151 ---~~~~v~~Ll~~~~~~~l-----~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~ 222 (474)
+.+++++|++.|.+.+. .+.+|..|+||||+|+..|+.+++++|+++.++++|..|.+|.||||+|+.
T Consensus 247 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~---- 322 (373)
T 2fo1_E 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ---- 322 (373)
T ss_dssp STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH----
T ss_pred CcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH----
Confidence 89999999999988543 234788999999999999999999999988779999999999999999999
Q ss_pred CCchHHHHHHHhcCCcchh
Q 011936 223 IKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 223 ~~~~~i~~~L~~~ga~~~~ 241 (474)
.++.+++++|+++|++...
T Consensus 323 ~g~~~iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 323 EGRIEVVMYLIQQGASVEA 341 (373)
T ss_dssp HTCHHHHHHHHHTTCCSSC
T ss_pred cCCHHHHHHHHHcCCCccC
Confidence 7889999999999998643
No 30
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-33 Score=262.37 Aligned_cols=200 Identities=24% Similarity=0.299 Sum_probs=182.0
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHh----cCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCc
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILR----RTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRN 107 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~t 107 (474)
..|.+|+||||+|+..|+.+++++|++ .+.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 81 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQT 81 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCC
Confidence 468899999999999999999999998 44444 778999999999999999999999999999988 678999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC---cccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccC-CCCCcHHHHHH
Q 011936 108 PLHVAAMKGRIQVLVELFRARPF---AAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKD-DYGMSILHLAV 183 (474)
Q Consensus 108 pLh~Aa~~g~~~~~~~Ll~~~~~---~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d-~~g~t~Lh~A~ 183 (474)
|||+|+..|+.+++++|++..+. ..+..|..|+||||+|+..|+.+++++|++.+.+ ++..| ..|.||||+|+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCCcHHHHHH
Confidence 99999999999999999997653 5677788999999999999999999999999988 67777 88999999999
Q ss_pred hcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 184 ADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 184 ~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
..++.+++++|+++ |++++..|.+|.||||+|+. .++.+++++|+++|++...
T Consensus 159 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 159 ENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp HTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred HcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCCC
Confidence 99999999999987 99999999999999999999 7789999999999998653
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-33 Score=261.13 Aligned_cols=198 Identities=26% Similarity=0.275 Sum_probs=182.6
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcC--CCccccCCCCCCcHHHHHHH
Q 011936 37 HETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVN--PDMCLARDVDGRNPLHVAAM 114 (474)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~--~~~~~~~d~~g~tpLh~Aa~ 114 (474)
|+||||.|+..|+.++++.|++.+++.....|..|+||||+|+..|+.+++++|++++ .+.....|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999999987878999999999999999999999999999 55544488999999999999
Q ss_pred cCCHHHHHHHHHhC-CCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHH
Q 011936 115 KGRIQVLVELFRAR-PFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINY 193 (474)
Q Consensus 115 ~g~~~~~~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~ 193 (474)
.|+.+++++|++.+ +...+..+..|+||||+|+..|+.+++++|+++|.+ ++.+|..|+||||+|+..|+.+++++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999964 366778889999999999999999999999999988 78999999999999999999999999
Q ss_pred hhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHH-hcCCcchh
Q 011936 194 LLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLR-GAGAFKAI 241 (474)
Q Consensus 194 Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~-~~ga~~~~ 241 (474)
|++....++|.+|..|.||||+|+. .++.+++++|+ ++|++...
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~ 203 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDL 203 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCC
T ss_pred HHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCc
Confidence 9988449999999999999999999 78899999999 89998654
No 32
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.6e-35 Score=271.13 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=179.5
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhcCCc---cccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcH
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRRTPV---LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNP 108 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tp 108 (474)
..|.+|+||||+|+..|+.+++++|++.++. ..+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 4678899999999999999999999998764 35778999999999999999999999999999998 7789999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC-----cccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCC-CCCcHHHHH
Q 011936 109 LHVAAMKGRIQVLVELFRARPF-----AAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDD-YGMSILHLA 182 (474)
Q Consensus 109 Lh~Aa~~g~~~~~~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~-~g~t~Lh~A 182 (474)
||+|+..|+.+++++|++.+.. .....+..|+||||+|+.+|+.+++++|+++|.+ ++.+|. .|+||||+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLA 158 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHH
Confidence 9999999999999999996642 3567788899999999999999999999999998 788887 999999999
Q ss_pred HhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 183 VADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 183 ~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+..++.+++++|+++ |++++.+|..|.||+|+|+. .++.+++++|+++|++...
T Consensus 159 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~ 212 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQ 212 (236)
T ss_dssp HHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred HHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHc----cCchHHHHHHHHcchhhhh
Confidence 999999999999987 99999999999999999998 7889999999999998653
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.4e-34 Score=273.58 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=193.2
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+||||.|+..|+.++++.|++.+.++. . .+|+||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAGALKN---L--LENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDS 105 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTGGGS---C--CTTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCC---C--CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHc
Confidence 589999999999999999999987542 2 25999999999999999999999999987 67899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCC-CcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHH
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDG-RNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVS 160 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 160 (474)
|+.+++++|+++|+++ +.+|..| .||||+|+..|+.+++++|++.++.... ...|+||||+|+.+|+.+++++|++
T Consensus 106 g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp TCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHH
Confidence 9999999999999998 6788889 8999999999999999999997655422 1289999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcH-HHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcc
Q 011936 161 IMNDPDFLNAKDDYGMSI-LHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 161 ~~~~~~l~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~ 239 (474)
+|++ ++.+|..|+|| ||+|+..++.+++++|+++ |+|++..|.. ++. .++.+++++|+++|++.
T Consensus 183 ~gad---~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~-------a~~----~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 183 YMTS---TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSANLE-------NVL----LDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp HHHH---TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCSTTTTGG-------GGT----TTCHHHHHHHHHHHHHH
T ss_pred cCCC---CCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCChh-------hhh----cCCHHHHHHHHHcCCCC
Confidence 9998 78999999998 9999999999999999987 9999998852 233 56889999999999876
Q ss_pred h
Q 011936 240 A 240 (474)
Q Consensus 240 ~ 240 (474)
.
T Consensus 248 ~ 248 (285)
T 3kea_A 248 K 248 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.2e-33 Score=261.81 Aligned_cols=205 Identities=22% Similarity=0.258 Sum_probs=106.3
Q ss_pred chHHHHHHHcCCHHHHHHHHhc-CccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccc----cccCCCCchHHH
Q 011936 2 ESLLYEASVEGNITTLLQLLEQ-DPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLA----GELDSRGSSPLH 76 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh 76 (474)
+||||.|+..|+.++++.|++. +.+ .+..|.+|+||||+|+..|+.+++++|++.+++.. +..|.+|+||||
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCE---VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCC---cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 3455555555555555555544 222 12344445555555555555555555555544331 222344555555
Q ss_pred HHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHH
Q 011936 77 MAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALK 156 (474)
Q Consensus 77 ~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 156 (474)
+|+..|+.+++++|+++|+++ +.++.. +.+ .......|.+|+||||+|++.|+.++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~--~~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATG--SVF-------------------HYRPHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCS--GGG-------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCC--cce-------------------eecccccccCCCCHHHHHHHcCCHHHHH
Confidence 555555555555555555444 222210 000 0000111235666666666666666666
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHH----HHhhhcccccc------ccccCCCCCHHHHHHhccCCCCch
Q 011936 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETI----NYLLVNTRVEV------NALNTHGYTALDILAQSRRDIKDL 226 (474)
Q Consensus 157 ~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv----~~Ll~~~~~d~------n~~n~~g~Tpl~~a~~~~~~~~~~ 226 (474)
+|+++|++ ++.+|.+|+||||+|+..++.+++ ++|++. |.+. +.+|..|.||||+|+. .++.
T Consensus 139 ~Ll~~ga~---~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~A~~----~g~~ 210 (232)
T 2rfa_A 139 LLIEHGAD---IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKLAGV----EGNI 210 (232)
T ss_dssp HHHHTTCC---TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCCHHHHHHH----HTCH
T ss_pred HHHHCCCC---CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCCHHHHHHH----cCCH
Confidence 66666666 556666666666666666666655 555554 4444 4566666666666666 5566
Q ss_pred HHHHHHHhcCCcc
Q 011936 227 DIADSLRGAGAFK 239 (474)
Q Consensus 227 ~i~~~L~~~ga~~ 239 (474)
+++++|+++|+..
T Consensus 211 ~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 211 VMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhcCccc
Confidence 6666666666544
No 35
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=265.50 Aligned_cols=193 Identities=21% Similarity=0.221 Sum_probs=177.2
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
+|+||||+|+..|+.+++++|++++.++ +..|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 5899999999999999999999999886 778999999999999999999999999999988 77899999999999999
Q ss_pred CCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 116 GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
|+.+++++|++.+... + .+.+|+||||+|+..|+.+++++|+++|.+ ++.+|.+|+||||+|+..++.+++++|+
T Consensus 80 ~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 80 GSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLGTPLYLACENQQRACVKKLL 154 (261)
T ss_dssp TCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 9999999999965443 3 355699999999999999999999999998 7899999999999999999999999999
Q ss_pred hccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 196 VNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 196 ~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+. |+++|. |..|.||||+|+. .++.+++++|+++|++...
T Consensus 155 ~~-g~~~~~-~~~g~t~Lh~A~~----~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 155 ES-GADVNQ-GKGQDSPLHAVAR----TASEELACLLMDFGADTQA 194 (261)
T ss_dssp HH-TCCTTC-CBTTBCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred Hc-CCCCCC-CCCCCChHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence 87 899995 8999999999999 6788999999999998654
No 36
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.2e-33 Score=257.11 Aligned_cols=197 Identities=25% Similarity=0.288 Sum_probs=184.8
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 011936 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAA 113 (474)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa 113 (474)
+..+.+|||.|+..|+.+.+++|++.++...+..|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence 3468899999999999999999999998888888999999999999999999999999999988 678999999999999
Q ss_pred HcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHH
Q 011936 114 MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINY 193 (474)
Q Consensus 114 ~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~ 193 (474)
..|+.+++++|++. +...+..|..|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++
T Consensus 82 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~ 157 (231)
T 3aji_A 82 SAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHI 157 (231)
T ss_dssp HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999994 556778899999999999999999999999999988 68899999999999999999999999
Q ss_pred hhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcch
Q 011936 194 LLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKA 240 (474)
Q Consensus 194 Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~ 240 (474)
|++. |++++.+|..|.||||+|+. .++.+++++|+++|++..
T Consensus 158 Ll~~-g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 158 LLFY-KASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHT-TCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred HHhc-CCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCC
Confidence 9986 99999999999999999999 788999999999999864
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.3e-33 Score=258.73 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=116.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhh--hhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCC----------
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDK--VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDS---------- 69 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~---------- 69 (474)
+||||.|+..|+.++++.|++.+++.... ...|..|.||||+|+..|+.+++++|++++++. +..+.
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~ 116 (232)
T 2rfa_A 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHN 116 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccc
Confidence 58999999999999999999998765321 345678999999999999999999999999887 34343
Q ss_pred ---CCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHH----HHHHHhCCCcc-----cccCC
Q 011936 70 ---RGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVL----VELFRARPFAA-----YSTTI 137 (474)
Q Consensus 70 ---~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~----~~Ll~~~~~~~-----~~~d~ 137 (474)
+|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++ ++|++.+.... +..|.
T Consensus 117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~ 195 (232)
T 2rfa_A 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195 (232)
T ss_dssp SCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCC
Confidence 5777777777777777777777777766 56677777777777777777666 56665443322 34555
Q ss_pred CChhHHHHHHHcCCHHHHHHHHHhcCC
Q 011936 138 WNETVLHLCVKHNQFEALKFLVSIMND 164 (474)
Q Consensus 138 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 164 (474)
.|+||||+|+++|+.+++++|++++..
T Consensus 196 ~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 196 QGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 556666666666666666666555543
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.4e-32 Score=252.82 Aligned_cols=191 Identities=20% Similarity=0.209 Sum_probs=177.9
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 102 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH
T ss_pred CchHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh
Confidence 58999999999999999999998654 457889999999999999999999999999866688899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. +...+..|..|+||||+|+++|+.+++++|+++
T Consensus 103 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 103 AVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp TCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999998 67899999999999999999999999995 667788899999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccc
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVE 201 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d 201 (474)
|++ ++.+|..|.||||+|+..++.+++++|+++ |+.
T Consensus 181 ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~ 216 (223)
T 2f8y_A 181 FAN---RDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV 216 (223)
T ss_dssp TCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred CCC---CccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence 998 688999999999999999999999999976 554
No 39
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-32 Score=249.11 Aligned_cols=190 Identities=21% Similarity=0.203 Sum_probs=175.2
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.+.++.|++.++. +.+..|.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 4899999999999999999998762 23557889999999999999999999999999887 67899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCC-----HHHHH
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ-----FEALK 156 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~ 156 (474)
|+.+++++|++++....+.+|..|.||||+|+..|+.+++++|++.++...+..|..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999665544478899999999999999999999999998878889999999999999999998 99999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhc
Q 011936 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197 (474)
Q Consensus 157 ~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 197 (474)
+|+++|++ ++.+|.+|+||||+|+..++.+++++|+++
T Consensus 163 ~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 163 LLMENGAD---QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHCCCC---CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 99999999 788999999999999999999999999865
No 40
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-33 Score=277.98 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=194.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhc----CCccccc-----------
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRR----TPVLAGE----------- 66 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~----~~~~~~~----------- 66 (474)
.||||.|+..|+.++++.|++.+... .+.+|.||||+|+..|+.+++++|++. +.+. +.
T Consensus 54 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~ 127 (364)
T 3ljn_A 54 CTALHLACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVN 127 (364)
T ss_dssp CCHHHHHHHHCCHHHHHHHHHHCCCC-----CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEE
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCc-----cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhh
Confidence 58999999999999999999998733 235799999999999999999999998 5554 33
Q ss_pred ------cCCCCchHHHHHHhcC--CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCc----ccc
Q 011936 67 ------LDSRGSSPLHMAAQKG--YVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFA----AYS 134 (474)
Q Consensus 67 ------~d~~g~tpLh~A~~~g--~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~----~~~ 134 (474)
.|.+|.||||+|+..| +.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.+. .+.
T Consensus 128 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~ 206 (364)
T 3ljn_A 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206 (364)
T ss_dssp EETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred hhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence 6889999999999999 999999999999998 788999999999999999999999999965542 777
Q ss_pred cCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhcccccccc----------
Q 011936 135 TTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNA---------- 204 (474)
Q Consensus 135 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~---------- 204 (474)
.|..|+||||+|+.+|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|+++ +.+++.
T Consensus 207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~ 282 (364)
T 3ljn_A 207 ANKQGNSHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTT 282 (364)
T ss_dssp CCTTCCCTTHHHHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSS
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCccc
Confidence 899999999999999999999999999999 789999999999999999999999999987 555432
Q ss_pred --ccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcc
Q 011936 205 --LNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 205 --~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~ 239 (474)
.+..++||++.|+. .+..+.+..|++.+++.
T Consensus 283 ~~~~~~~~~~l~~aa~----~~~~~~v~~ll~~~~~~ 315 (364)
T 3ljn_A 283 VLPDRVVWLDFVPAAA----DPSKQEVLQLLQEKLDE 315 (364)
T ss_dssp BCGGGCCCCTTSCSSC----CHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhh----ccCHHHHHHHHHHHHHH
Confidence 56678888888776 55556666666655544
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.9e-34 Score=264.68 Aligned_cols=211 Identities=21% Similarity=0.200 Sum_probs=184.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccc-hhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLI-LDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQ 80 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 80 (474)
+||||.|+..|+.++++.|++.+... .+.+..|..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+.
T Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 87 (236)
T 1ikn_D 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACE 87 (236)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHH
T ss_pred CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 68999999999999999999876521 123457888999999999999999999999999887 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCc-----cccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCC-CChhHHHHHHHcCCHHH
Q 011936 81 KGYVDIVKELLQVNPDM-----CLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI-WNETVLHLCVKHNQFEA 154 (474)
Q Consensus 81 ~g~~~iv~~LL~~~~~~-----~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~ 154 (474)
.|+.+++++|++++++. ....|..|.||||+|+..|+.+++++|++.+ ...+..+. .|+||||+|+..|+.++
T Consensus 88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~ 166 (236)
T 1ikn_D 88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDL 166 (236)
T ss_dssp HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999998652 3667889999999999999999999999955 45666676 99999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccc--cccCCCCCHHHHHHh
Q 011936 155 LKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVN--ALNTHGYTALDILAQ 218 (474)
Q Consensus 155 v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n--~~n~~g~Tpl~~a~~ 218 (474)
+++|+++|++ ++.+|..|+||||+|+..++.+++++|+++ |++.. ..+.+|.||.+....
T Consensus 167 v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 167 VSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp HHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-SCGGGSSCCCCCTTTCCCCC--
T ss_pred HHHHHHcCCC---CCcccCCCCCHHHHHHccCchHHHHHHHHc-chhhhhcCCccchHHHHhhhcc
Confidence 9999999999 789999999999999999999999999977 78765 788899998876543
No 42
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-32 Score=263.60 Aligned_cols=227 Identities=20% Similarity=0.158 Sum_probs=196.0
Q ss_pred HHHHcCCHHHHHHHHhcCccchhhh------hcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 011936 7 EASVEGNITTLLQLLEQDPLILDKV------VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQ 80 (474)
Q Consensus 7 ~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 80 (474)
.++..|..+.++.++.......... ..+..|.||||.|+..|+.+++++|+++++++ +..|.+|+||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence 5788888999999998765432211 12345789999999999999999999999887 7789999999999999
Q ss_pred cCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHH
Q 011936 81 KGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVS 160 (474)
Q Consensus 81 ~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 160 (474)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. +...+..|..|.||||+|+..++.++++.++.
T Consensus 83 ~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 99999999999999998 77899999999999999999999999995 56677889999999999999999999988775
Q ss_pred hc-CCC-----------------------CcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHH
Q 011936 161 IM-NDP-----------------------DFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDIL 216 (474)
Q Consensus 161 ~~-~~~-----------------------~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a 216 (474)
.. .+. ......+..|.||||+|+..|+.+++++|++. |+|+|..|..|.||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A 239 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAA 239 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHH
T ss_pred hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHH
Confidence 42 220 01234667899999999999999999999976 899999999999999999
Q ss_pred HhccCCCCchHHHHHHHhcCCcchh
Q 011936 217 AQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 217 ~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+. .++.+++++|+++|++...
T Consensus 240 ~~----~~~~~~v~~Ll~~gad~~~ 260 (299)
T 1s70_B 240 AH----WGKEEACRILVENLCDMEA 260 (299)
T ss_dssp HH----TTCHHHHHHHHHTTCCTTC
T ss_pred Hh----cCCHHHHHHHHHcCCCCCC
Confidence 99 7889999999999998654
No 43
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.4e-33 Score=262.05 Aligned_cols=195 Identities=22% Similarity=0.231 Sum_probs=123.0
Q ss_pred CCCHHHHHHhcCCHH----HHHHHHhcCCcccc---ccCCCCchHHHHHHhc---CCHHHHHHHHhcCCCccc-------
Q 011936 37 HETPLHVAALRGHLH----FAKEILRRTPVLAG---ELDSRGSSPLHMAAQK---GYVDIVKELLQVNPDMCL------- 99 (474)
Q Consensus 37 g~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~---~~d~~g~tpLh~A~~~---g~~~iv~~LL~~~~~~~~------- 99 (474)
|+||||.|+..|+.+ ++++|++.+.++.. ..|.+|+||||+|+.. |+.+++++|+++|++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 455555555555554 33444445544421 1455555555555555 555555555555544311
Q ss_pred ---cCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCC-------------ChhHHHHHHHcCCHHHHHHHHH---
Q 011936 100 ---ARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIW-------------NETVLHLCVKHNQFEALKFLVS--- 160 (474)
Q Consensus 100 ---~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~v~~Ll~--- 160 (474)
.+|..|.||||+|+..|+.+++++|++. +...+..+.. |+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 1224455666666666666666655553 3333333333 7788888888888888888887
Q ss_pred hcCCCCcccccCCCCCcHHHHHHh--cCChH-------HHHHhhhcccccc-------ccccCCCCCHHHHHHhccCCCC
Q 011936 161 IMNDPDFLNAKDDYGMSILHLAVA--DKQIE-------TINYLLVNTRVEV-------NALNTHGYTALDILAQSRRDIK 224 (474)
Q Consensus 161 ~~~~~~l~~~~d~~g~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~d~-------n~~n~~g~Tpl~~a~~~~~~~~ 224 (474)
.|++ ++.+|.+|+||||+|+. .++.+ ++++|+++ |+++ +.+|..|.||||+|+. .+
T Consensus 161 ~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~----~g 232 (256)
T 2etb_A 161 QPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAK----EG 232 (256)
T ss_dssp CCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHH----TT
T ss_pred cCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHH----hC
Confidence 6777 67777788888888877 66666 77777766 7777 7778888888888887 66
Q ss_pred chHHHHHHHhcCCcch
Q 011936 225 DLDIADSLRGAGAFKA 240 (474)
Q Consensus 225 ~~~i~~~L~~~ga~~~ 240 (474)
+.+++++|+++|+...
T Consensus 233 ~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 233 KIEIFRHILQREFSGA 248 (256)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCC
Confidence 7788888887777654
No 44
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=259.12 Aligned_cols=199 Identities=24% Similarity=0.250 Sum_probs=156.2
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCcc-------ccccCCCCchHHHHHHhcCCH-HHHHHHHhcCCCccccCCCC
Q 011936 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVL-------AGELDSRGSSPLHMAAQKGYV-DIVKELLQVNPDMCLARDVD 104 (474)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~A~~~g~~-~iv~~LL~~~~~~~~~~d~~ 104 (474)
.|..+.+||+.|+..|+.++|++|++.+++. .+..|..|.||||.|+..++. ++++.|++.|+++ +.+|.+
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~ 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQD 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCC
Confidence 4566789999999999999999999988653 345577899999999988876 4889999999998 788999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHh
Q 011936 105 GRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVA 184 (474)
Q Consensus 105 g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~ 184 (474)
|+||||+|+..|+.+++++|++ .+......+.+|.||+|.|+..++.+++++|++.|.+ ++.+|.+|+||||+|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSGNTPLIYACS 161 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999 4556778889999999999999999999999999998 78999999999999999
Q ss_pred cCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 185 DKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 185 ~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
.|+.+++++|++. |+|+|..|..|.||||+|+. .++.+++++|+++|++.+.
T Consensus 162 ~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~ 213 (269)
T 4b93_B 162 GGHHELVALLLQH-GASINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQV 213 (269)
T ss_dssp TTCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred CCCHHHHHHHHHC-CCCCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence 9999999999986 99999999999999999999 7889999999999998754
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=1.1e-32 Score=261.98 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=143.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhc----Cccchhhh-hcCCCCCCHHHHHHhc---CCHHHHHHHHhcCCcc------c---
Q 011936 2 ESLLYEASVEGNITTLLQLLEQ----DPLILDKV-VANRHHETPLHVAALR---GHLHFAKEILRRTPVL------A--- 64 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~-~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~------~--- 64 (474)
+||||.|+..|+.++|+.|++. +..+.+.. ..|..|+||||+|+.. |+.+++++|++.+++. .
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 5899999999999988888874 33222111 2467899999999986 9999999999987542 1
Q ss_pred -cccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCC--------------CCCcHHHHHHHcCCHHHHHHHHHh--
Q 011936 65 -GELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDV--------------DGRNPLHVAAMKGRIQVLVELFRA-- 127 (474)
Q Consensus 65 -~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~--------------~g~tpLh~Aa~~g~~~~~~~Ll~~-- 127 (474)
...|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 124668999999999999999999999998887 45554 577777777777777777777774
Q ss_pred CCCcccccCCCChhHHHHHHHcCC---------HHHHHHHHHhcCCCC----cccccCCCCCcHHHHHHhcCChHHHHHh
Q 011936 128 RPFAAYSTTIWNETVLHLCVKHNQ---------FEALKFLVSIMNDPD----FLNAKDDYGMSILHLAVADKQIETINYL 194 (474)
Q Consensus 128 ~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~----l~~~~d~~g~t~Lh~A~~~~~~~iv~~L 194 (474)
.+...+.+|.+|+||||+|++.|+ .+++++|++.|++.+ +++.+|.+|+||||+|+..|+.+++++|
T Consensus 173 ~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252 (273)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence 455566677777777777777766 677777777766521 1134677777777777777777777777
Q ss_pred hhcccc-ccccccCCCCCH
Q 011936 195 LVNTRV-EVNALNTHGYTA 212 (474)
Q Consensus 195 l~~~~~-d~n~~n~~g~Tp 212 (474)
+++ |+ |+......+.+|
T Consensus 253 l~~-ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 253 LQR-EIHEPECRHAAAHHH 270 (273)
T ss_dssp HHH-HTC------------
T ss_pred HHC-CCCCchhhhhhhhhc
Confidence 766 44 666555555544
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=1.6e-32 Score=260.80 Aligned_cols=198 Identities=19% Similarity=0.221 Sum_probs=171.4
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhc----CCcccc---ccCCCCchHHHHHHhc---CCHHHHHHHHhcCCCcc---
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRR----TPVLAG---ELDSRGSSPLHMAAQK---GYVDIVKELLQVNPDMC--- 98 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~----~~~~~~---~~d~~g~tpLh~A~~~---g~~~iv~~LL~~~~~~~--- 98 (474)
..|..|+||||.|+..|+.++++.|++. +.++.. ..|..|+||||+|+.. |+.+++++|+++|++..
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 4678899999999999999999999874 333321 3588999999999987 99999999999976531
Q ss_pred -------ccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCC--------------CChhHHHHHHHcCCHHHHHH
Q 011936 99 -------LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTI--------------WNETVLHLCVKHNQFEALKF 157 (474)
Q Consensus 99 -------~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~v~~ 157 (474)
..+|..|.||||+|+..|+.+++++|++. +...+..+. .|+||||+|+.+|+.+++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 12567899999999999999999999995 555666665 79999999999999999999
Q ss_pred HHH---hcCCCCcccccCCCCCcHHHHHHhcCC---------hHHHHHhhhccccccc-------cccCCCCCHHHHHHh
Q 011936 158 LVS---IMNDPDFLNAKDDYGMSILHLAVADKQ---------IETINYLLVNTRVEVN-------ALNTHGYTALDILAQ 218 (474)
Q Consensus 158 Ll~---~~~~~~l~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~d~n-------~~n~~g~Tpl~~a~~ 218 (474)
|++ .|.+ ++.+|.+|+||||+|+..++ .+++++|++. |+++| .+|..|.||||+|+.
T Consensus 167 Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 167 LLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHH
Confidence 999 8888 78999999999999999988 7899999977 89986 589999999999999
Q ss_pred ccCCCCchHHHHHHHhcCCc
Q 011936 219 SRRDIKDLDIADSLRGAGAF 238 (474)
Q Consensus 219 ~~~~~~~~~i~~~L~~~ga~ 238 (474)
.++.+++++|+++|++
T Consensus 243 ----~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 243 ----SGKIGVLAYILQREIH 258 (273)
T ss_dssp ----TTCHHHHHHHHHHHTC
T ss_pred ----hChHHHHHHHHHCCCC
Confidence 7889999999999994
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=5.4e-32 Score=254.62 Aligned_cols=198 Identities=23% Similarity=0.233 Sum_probs=168.8
Q ss_pred chHHHHHHHcCCHH----HHHHHHhcCccchhh-hhcCCCCCCHHHHHHhc---CCHHHHHHHHhcCCcccc--------
Q 011936 2 ESLLYEASVEGNIT----TLLQLLEQDPLILDK-VVANRHHETPLHVAALR---GHLHFAKEILRRTPVLAG-------- 65 (474)
Q Consensus 2 et~L~~A~~~g~~~----~v~~Ll~~~~~~~~~-~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~-------- 65 (474)
.||||.|+..|+.+ +++.|++.+.++... ...|.+|+||||+|+.. |+.+++++|++.+++...
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 58999999999998 455666677654210 01588999999999999 999999999998866521
Q ss_pred --ccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCC-------------CCcHHHHHHHcCCHHHHHHHHHh--C
Q 011936 66 --ELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVD-------------GRNPLHVAAMKGRIQVLVELFRA--R 128 (474)
Q Consensus 66 --~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~-------------g~tpLh~Aa~~g~~~~~~~Ll~~--~ 128 (474)
..|..|+||||+|+..|+.+++++|+++|+++ +.+|.. |.||||+|+..|+.+++++|++. .
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 23578999999999999999999999999998 556665 99999999999999999999995 5
Q ss_pred CCcccccCCCChhHHHHHHH--cCCHH-------HHHHHHHhcCCCC----cccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 129 PFAAYSTTIWNETVLHLCVK--HNQFE-------ALKFLVSIMNDPD----FLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 129 ~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~----l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
+...+..|.+|+||||+|+. +++.+ ++++|+++|++.. +.+.+|.+|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 67788899999999999999 88888 9999999998721 11889999999999999999999999999
Q ss_pred hccccc
Q 011936 196 VNTRVE 201 (474)
Q Consensus 196 ~~~~~d 201 (474)
++ |.+
T Consensus 242 ~~-g~~ 246 (256)
T 2etb_A 242 QR-EFS 246 (256)
T ss_dssp HH-HHH
T ss_pred hC-CCC
Confidence 87 444
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.9e-31 Score=233.31 Aligned_cols=156 Identities=30% Similarity=0.365 Sum_probs=76.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHH
Q 011936 40 PLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQ 119 (474)
Q Consensus 40 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~ 119 (474)
+|+.||..|+.++|+.|+++|+++ +.+|.+|+||||+|+..++.++++.|+++|+++ +.+|.+|+||||+|+..|+.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHH
Confidence 345555555555555555555444 444555555555555555555555555555544 344455555555555555555
Q ss_pred HHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccc
Q 011936 120 VLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTR 199 (474)
Q Consensus 120 ~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 199 (474)
++++|++ .+.+++.+|.+|+||||+|+++|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++ |
T Consensus 85 ~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-G 159 (169)
T 4gpm_A 85 VVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-G 159 (169)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence 5555554 2233444444555555555555555555555555544 344555555555555555555555555543 4
Q ss_pred ccc
Q 011936 200 VEV 202 (474)
Q Consensus 200 ~d~ 202 (474)
+++
T Consensus 160 A~i 162 (169)
T 4gpm_A 160 GWL 162 (169)
T ss_dssp ---
T ss_pred CCc
Confidence 444
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.4e-31 Score=233.80 Aligned_cols=157 Identities=31% Similarity=0.400 Sum_probs=145.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.++|+.||+.|+.++|+.||+.+.++ +..|.+|+||||+|+..|+.++++.|++.+.++ +..|.+|+||||+|+..
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~ 80 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAEN 80 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHc
Confidence 46899999999999999999999755 568999999999999999999999999999987 77899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++ .+.+.+.+|.+|+||||+|+++|+.+++++|+++
T Consensus 81 g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 158 (169)
T 4gpm_A 81 GHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158 (169)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999998 7899999999999999999999999999 5567788999999999999999999999999999
Q ss_pred cCC
Q 011936 162 MND 164 (474)
Q Consensus 162 ~~~ 164 (474)
|++
T Consensus 159 GA~ 161 (169)
T 4gpm_A 159 GGW 161 (169)
T ss_dssp ---
T ss_pred CCC
Confidence 987
No 50
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=241.61 Aligned_cols=200 Identities=20% Similarity=0.199 Sum_probs=182.6
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHH
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHV 111 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~ 111 (474)
..|..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++++.....+..|.||||+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 35778999999999999999999999999886 67799999999999999999999999999999877777789999999
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCC-hHH
Q 011936 112 AAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQ-IET 190 (474)
Q Consensus 112 Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~-~~i 190 (474)
|+..|+.+++++|++ .+...+..+..|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++ .++
T Consensus 83 A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred HHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCChHHH
Confidence 999999999999999 4566777889999999999999999999999999988 78899999999999997766 788
Q ss_pred HHHhhhccccccccccC-CCCCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 191 INYLLVNTRVEVNALNT-HGYTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 191 v~~Ll~~~~~d~n~~n~-~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+++|++. +++++..+. .|.||||+|+. .++.+++++|+++|++...
T Consensus 159 ~~~L~~~-~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~ 205 (240)
T 3eu9_A 159 TRLLLTF-NVSVNLGDKYHKNTALHWAVL----AGNTTVISLLLEAGANVDA 205 (240)
T ss_dssp HHHHHHT-TCCTTCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTTC
T ss_pred HHHHHhc-CCCcchhhccCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence 8888865 999999997 99999999999 7789999999999998643
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.8e-31 Score=251.59 Aligned_cols=195 Identities=19% Similarity=0.199 Sum_probs=121.0
Q ss_pred chHHHHHHHcCCHHHHHHHHh----cCccchhhh-hcCCCCCCHHHHHH---hcCCHHHHHHHHhcCCcc----------
Q 011936 2 ESLLYEASVEGNITTLLQLLE----QDPLILDKV-VANRHHETPLHVAA---LRGHLHFAKEILRRTPVL---------- 63 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~Aa---~~g~~~~v~~Ll~~~~~~---------- 63 (474)
+++||.|++.|+.+.++.|++ .+..+.... ..+..|+||||+|+ ..|+.+++++|++.+++.
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 478999999999996666655 665543221 23467999999998 679999999999876431
Q ss_pred ccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCC--------------CCCCcHHHHHHHcCCHHHHHHHHHh--
Q 011936 64 AGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARD--------------VDGRNPLHVAAMKGRIQVLVELFRA-- 127 (474)
Q Consensus 64 ~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d--------------~~g~tpLh~Aa~~g~~~~~~~Ll~~-- 127 (474)
.+..|..|+||||+|+..|+.+++++|+++|+++ +.+| ..|.||||+|+..|+.+++++|++.
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 2334557888888888888888888888888887 4455 3455555555555555555555553
Q ss_pred CCCcccccCCCChhHHHHHHHcCC---------HHHHHHHHHhcCCC----CcccccCCCCCcHHHHHHhcCChHHHHHh
Q 011936 128 RPFAAYSTTIWNETVLHLCVKHNQ---------FEALKFLVSIMNDP----DFLNAKDDYGMSILHLAVADKQIETINYL 194 (474)
Q Consensus 128 ~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~----~l~~~~d~~g~t~Lh~A~~~~~~~iv~~L 194 (474)
.+...+..|.+|+||||+|++.++ .+++++|+++|++. .+.+.+|.+|+||||+|+..|+.+++++|
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 333444455555555555555444 45555555554431 01134455555555555555555555555
Q ss_pred hhc
Q 011936 195 LVN 197 (474)
Q Consensus 195 l~~ 197 (474)
+++
T Consensus 245 l~~ 247 (260)
T 3jxi_A 245 IRR 247 (260)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.1e-31 Score=252.98 Aligned_cols=199 Identities=21% Similarity=0.222 Sum_probs=171.4
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHh----cCCccccc---cCCCCchHHHHHH---hcCCHHHHHHHHhcCCCc------
Q 011936 34 NRHHETPLHVAALRGHLHFAKEILR----RTPVLAGE---LDSRGSSPLHMAA---QKGYVDIVKELLQVNPDM------ 97 (474)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~---~d~~g~tpLh~A~---~~g~~~iv~~LL~~~~~~------ 97 (474)
+..|+|+||.|+..|+.+.++.|++ .+.++... .|..|+||||+|+ +.|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4678999999999999996555555 77776322 2377999999999 779999999999987542
Q ss_pred ----cccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccC--------------CCChhHHHHHHHcCCHHHHHHHH
Q 011936 98 ----CLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTT--------------IWNETVLHLCVKHNQFEALKFLV 159 (474)
Q Consensus 98 ----~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll 159 (474)
....|..|+||||+|+..|+.+++++|++. +...+..+ ..|+||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 133456899999999999999999999995 55566666 58999999999999999999999
Q ss_pred H---hcCCCCcccccCCCCCcHHHHHHhcCC---------hHHHHHhhhcccccc-------ccccCCCCCHHHHHHhcc
Q 011936 160 S---IMNDPDFLNAKDDYGMSILHLAVADKQ---------IETINYLLVNTRVEV-------NALNTHGYTALDILAQSR 220 (474)
Q Consensus 160 ~---~~~~~~l~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~d~-------n~~n~~g~Tpl~~a~~~~ 220 (474)
+ .|.+ ++.+|.+|+||||+|+..++ .+++++|+++ |+++ +..|.+|.||||+|+.
T Consensus 161 ~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~-- 234 (260)
T 3jxi_A 161 ENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAK-- 234 (260)
T ss_dssp HCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH--
T ss_pred hccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHH--
Confidence 9 8888 78999999999999998887 6899999977 8988 7899999999999999
Q ss_pred CCCCchHHHHHHHhcCCcchh
Q 011936 221 RDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 221 ~~~~~~~i~~~L~~~ga~~~~ 241 (474)
.++.+++++|+++|++...
T Consensus 235 --~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 235 --TGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp --TTCHHHHHHHHHHHHHHHC
T ss_pred --cCCHHHHHHHHHhCCCccc
Confidence 7899999999999987643
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=9.8e-32 Score=262.42 Aligned_cols=199 Identities=18% Similarity=0.099 Sum_probs=164.2
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccchhhhh-cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcC
Q 011936 4 LLYEASVEGNITTLLQLLEQDPLILDKVV-ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKG 82 (474)
Q Consensus 4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 82 (474)
.+|.|+..+..++++.|++.+.++ +. .|.+|+||||+|+..|+.++|++|+++++++ +..|.+|+||||+|+..|
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dv---n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNL---NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSV 175 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCS---CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSS
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhc
Confidence 346777777788888888887654 45 6889999999999999999999999999888 788999999999999999
Q ss_pred C---HHHHHHHHhcCCCccccCCCCCCcHHHHHHH----cCCHHHHHHHHHhC-------------------CCcccccC
Q 011936 83 Y---VDIVKELLQVNPDMCLARDVDGRNPLHVAAM----KGRIQVLVELFRAR-------------------PFAAYSTT 136 (474)
Q Consensus 83 ~---~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~----~g~~~~~~~Ll~~~-------------------~~~~~~~d 136 (474)
+ .++++.|++.+....+.+|..|+||||+|+. .|+.++++.|++.. +...+..+
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 255 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence 9 7888888888744347899999999999999 89999999999853 56677889
Q ss_pred CCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHH
Q 011936 137 IWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDIL 216 (474)
Q Consensus 137 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a 216 (474)
..|+||||.|+. +++|++. + ++.+|.+|+||||+|+..|+.+++++|+++ |+|++.+|.+|+||||+|
T Consensus 256 ~~g~t~L~~a~~------~~~Ll~~--~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 256 GERKDSILENLD------LKWIIAN--M---LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFG 323 (327)
T ss_dssp ----CHHHHHCS------HHHHHHH--T---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGT
T ss_pred ccCCChhHHHHH------HHHHHHh--C---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHH
Confidence 999999999996 8899987 3 789999999999999999999999999977 999999999999999998
Q ss_pred Hh
Q 011936 217 AQ 218 (474)
Q Consensus 217 ~~ 218 (474)
++
T Consensus 324 ~~ 325 (327)
T 1sw6_A 324 AG 325 (327)
T ss_dssp CC
T ss_pred Hh
Confidence 76
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.7e-30 Score=227.77 Aligned_cols=170 Identities=23% Similarity=0.228 Sum_probs=136.4
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcC
Q 011936 37 HETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKG 116 (474)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g 116 (474)
+.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 4678888888888888888888888766777888888888888888888888888888877 667888888888888888
Q ss_pred CHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhh
Q 011936 117 RIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196 (474)
Q Consensus 117 ~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 196 (474)
+.+++++|++ .+...+..|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|++
T Consensus 81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 81 YTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 8888888887 4555677788888888888888888888888888887 67788888899999988888888888887
Q ss_pred ccccccccccCCCCCH
Q 011936 197 NTRVEVNALNTHGYTA 212 (474)
Q Consensus 197 ~~~~d~n~~n~~g~Tp 212 (474)
+ +.++...|..|.||
T Consensus 157 ~-~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 H-ILKLFQSNLVPADP 171 (172)
T ss_dssp H-HHHHSCC-------
T ss_pred H-HHHHhcccCCCCCC
Confidence 6 78888888877776
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=248.34 Aligned_cols=194 Identities=23% Similarity=0.292 Sum_probs=159.2
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCc-cccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH-
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPV-LAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAA- 113 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa- 113 (474)
.+.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|+||||+|+..|+.+++++|++.|+...+..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 356788888888888888888876544 246678888888888888888888888888888444778888888888888
Q ss_pred ----HcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChH
Q 011936 114 ----MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIE 189 (474)
Q Consensus 114 ----~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~ 189 (474)
..++.++++.|++.+ ......|..|+||||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKE 230 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHH
Confidence 667888888888854 55566677888888888888888888888888888 6788888888888888888888
Q ss_pred HHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCC
Q 011936 190 TINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGA 237 (474)
Q Consensus 190 iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga 237 (474)
++++|++..|+|++.+|.+|.||||+|+. .++.+++++|++++.
T Consensus 231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 231 IAGLLLAVPSCDISLTDRDGSTALMVALD----AGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHTSTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhccC
Confidence 88888875688888888888888888888 677888888887653
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=247.12 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=175.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHH--
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAA-- 79 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-- 79 (474)
.+++|.|+..|+.+.++.+++..... ..+..|.+|+||||+|+..|+.+++++|++.++...+..|..|+||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 36788999999999999999876542 246689999999999999999999999999998556888999999999999
Q ss_pred ---hcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHH
Q 011936 80 ---QKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALK 156 (474)
Q Consensus 80 ---~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 156 (474)
..++.++++.|++.|.+. ...|..|+||||+|+..|+.+++++|++ .+.+++..|.+|+||||+|+.+|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 678999999999999776 6788899999999999999999999999 46678888999999999999999999999
Q ss_pred HHHH-hcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhcccc
Q 011936 157 FLVS-IMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRV 200 (474)
Q Consensus 157 ~Ll~-~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 200 (474)
+|++ .|++ ++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus 234 ~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 234 LLLAVPSCD---ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 9999 7888 788999999999999999999999999987544
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.8e-29 Score=225.49 Aligned_cols=161 Identities=22% Similarity=0.242 Sum_probs=129.1
Q ss_pred hhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHH
Q 011936 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLH 110 (474)
Q Consensus 31 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh 110 (474)
+..|..|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 346777888888888888888888888887766 566788888888888888888888888888777 667778888888
Q ss_pred HHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHH
Q 011936 111 VAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIET 190 (474)
Q Consensus 111 ~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~i 190 (474)
+|+..|+.+++++|++ .+...+..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..++.++
T Consensus 107 ~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHHH
Confidence 8888888888888887 4555667777888888888888888888888888777 67778888888888888888888
Q ss_pred HHHhhhc
Q 011936 191 INYLLVN 197 (474)
Q Consensus 191 v~~Ll~~ 197 (474)
+++|++.
T Consensus 183 v~~Ll~~ 189 (192)
T 2rfm_A 183 IKIFTEV 189 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8887764
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=4e-29 Score=217.86 Aligned_cols=156 Identities=24% Similarity=0.322 Sum_probs=85.1
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
+||||.|+..|+.++++.|++.+.++ +..|..|+||||+|+. |+.+++++|++.+.++ +..|..|+||||+|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 35555555555555555555554432 3344555555555555 5555555555555544 44455555555555555
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+....+..|..|+||||+|+++|+.+++++|+++
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555555554 445555555555555555555555555544444445555555555555555555555555555
Q ss_pred cC
Q 011936 162 MN 163 (474)
Q Consensus 162 ~~ 163 (474)
|+
T Consensus 160 GA 161 (162)
T 1ihb_A 160 GA 161 (162)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=5.9e-29 Score=219.18 Aligned_cols=169 Identities=19% Similarity=0.173 Sum_probs=149.3
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.+|||.|+..|+.+.++.|++.++.. .+..|..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGG--GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCccc--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 37999999999999999999998753 3457889999999999999999999999999887 77799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++ .+...+..|.+|+||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999998 7789999999999999999999999999 4566788899999999999999999999999999
Q ss_pred cCCCCcccccCCCCCcH
Q 011936 162 MNDPDFLNAKDDYGMSI 178 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~ 178 (474)
+.+ +..++..|.||
T Consensus 158 ~~~---~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILK---LFQSNLVPADP 171 (172)
T ss_dssp HHH---HSCC-------
T ss_pred HHH---HhcccCCCCCC
Confidence 987 56677777765
No 60
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=5.6e-30 Score=249.95 Aligned_cols=212 Identities=20% Similarity=0.198 Sum_probs=166.9
Q ss_pred CCHHHHHHHHhcCccchhhhh--------------cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccc-cCCCCchHHH
Q 011936 12 GNITTLLQLLEQDPLILDKVV--------------ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGE-LDSRGSSPLH 76 (474)
Q Consensus 12 g~~~~v~~Ll~~~~~~~~~~~--------------~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh 76 (474)
|+.++++.|++++.+...... ......+.+|.|+..+..++++.|++.+.++ +. .|.+|+||||
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh 136 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLH 136 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHH
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHH
Confidence 899999999998743211000 0011223458888888889999999999888 55 7999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCC---HHHHHHHHHhCCCcccccCCCChhHHHHHHH----c
Q 011936 77 MAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGR---IQVLVELFRARPFAAYSTTIWNETVLHLCVK----H 149 (474)
Q Consensus 77 ~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~---~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~ 149 (474)
+|+..|+.++|++|+++|+++ +.+|.+|+||||+|+..|+ .++++.|++......+..|..|+||||+|++ .
T Consensus 137 ~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~ 215 (327)
T 1sw6_A 137 WLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 215 (327)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999999998 7899999999999999998 7888888887666788899999999999999 8
Q ss_pred CCHHHHHHHHHh--------------------cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCC
Q 011936 150 NQFEALKFLVSI--------------------MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHG 209 (474)
Q Consensus 150 ~~~~~v~~Ll~~--------------------~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g 209 (474)
|+.+++++|++. +.+ ++.+|.+|.||||.|+. +++|+++ ++|.+|.+|
T Consensus 216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~---~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G 283 (327)
T 1sw6_A 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK---PNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNG 283 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------HHHHHHH---TTTCCCTTS
T ss_pred ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC---cccccccCCChhHHHHH------HHHHHHh---CCCCCCCCC
Confidence 999999999987 555 78899999999999985 7888865 699999999
Q ss_pred CCHHHHHHhccCCCCchHHHHHHHhcCCcchh
Q 011936 210 YTALDILAQSRRDIKDLDIADSLRGAGAFKAI 241 (474)
Q Consensus 210 ~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~~~ 241 (474)
+||||+|+. .++.+++++|+++|++...
T Consensus 284 ~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~ 311 (327)
T 1sw6_A 284 DTCLNIAAR----LGNISIVDALLDYGADPFI 311 (327)
T ss_dssp CCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence 999999999 7789999999999998754
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.3e-28 Score=215.85 Aligned_cols=156 Identities=22% Similarity=0.249 Sum_probs=126.3
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
.|.||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 4678888888888888888888887665 667888888888888888888888888888777 56778888888888888
Q ss_pred CCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 116 GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
|+.+++++|++. +...+..|..|+||||+|+..|+.+++++|+++|.+ ++.+|.+|.||||+|+..|+.+++++|+
T Consensus 80 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 80 GYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 888888888884 445666777888888888888888888888888777 5777888888888888888888888887
Q ss_pred hc
Q 011936 196 VN 197 (474)
Q Consensus 196 ~~ 197 (474)
++
T Consensus 156 ~~ 157 (167)
T 3v31_A 156 SH 157 (167)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=9.9e-29 Score=215.33 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=120.7
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
...||||.|+..|+.++++.|+++++++ +..|..|+||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 3567888888888888888888877766 6667788888888877 8888888888888776 56777888888888888
Q ss_pred CCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 116 GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
|+.+++++|++ .+...+..|.+|+||||+|++.|+.+++++|++++.+. ++.+|..|.||||+|+..++.+++++|+
T Consensus 81 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 81 GFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 88888888887 34556667777888888888888888888888777653 4677777888888888888888777777
Q ss_pred hcccc
Q 011936 196 VNTRV 200 (474)
Q Consensus 196 ~~~~~ 200 (474)
++ |+
T Consensus 158 ~~-GA 161 (162)
T 1ihb_A 158 AN-GA 161 (162)
T ss_dssp HT-C-
T ss_pred Hh-CC
Confidence 65 44
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=6e-29 Score=223.30 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=152.4
Q ss_pred ccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHH
Q 011936 64 AGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVL 143 (474)
Q Consensus 64 ~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~L 143 (474)
.+.+|..|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.+ ...+..|..|+|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHH
Confidence 3567899999999999999999999999999887 678999999999999999999999999964 55778899999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCC
Q 011936 144 HLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDI 223 (474)
Q Consensus 144 h~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~ 223 (474)
|+|+..|+.+++++|+++|.+ ++.+|.+|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|+. .
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~----~ 177 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARI----F 177 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHH----T
T ss_pred HHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH----h
Confidence 999999999999999999998 789999999999999999999999999987 99999999999999999999 7
Q ss_pred CchHHHHHHHhcC
Q 011936 224 KDLDIADSLRGAG 236 (474)
Q Consensus 224 ~~~~i~~~L~~~g 236 (474)
++.+++++|+++|
T Consensus 178 ~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 178 GRQEVIKIFTEVR 190 (192)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcc
Confidence 8899999998764
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.3e-28 Score=218.69 Aligned_cols=169 Identities=18% Similarity=0.141 Sum_probs=124.8
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 011936 35 RHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAM 114 (474)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~ 114 (474)
+++.++||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 346778888888888888888888766666777888888888888888888888888888777 5677778888888888
Q ss_pred cCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHh
Q 011936 115 KGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYL 194 (474)
Q Consensus 115 ~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~L 194 (474)
.|+.+++++|++. +...+..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..++.+++++|
T Consensus 82 ~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 82 HGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 8888888877773 455666677777777777777777777777777776 566777777777777777777777777
Q ss_pred hhccccccccccCCC
Q 011936 195 LVNTRVEVNALNTHG 209 (474)
Q Consensus 195 l~~~~~d~n~~n~~g 209 (474)
++. |++++..+.++
T Consensus 158 ~~~-g~~~~~~~~~~ 171 (179)
T 3f6q_A 158 EKM-GQNLNRIPYKD 171 (179)
T ss_dssp HHT-TCCCSCBCCCC
T ss_pred HHh-hcCcccCCccc
Confidence 755 67766655443
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.6e-28 Score=213.68 Aligned_cols=159 Identities=24% Similarity=0.344 Sum_probs=124.1
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHH
Q 011936 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVA 112 (474)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~A 112 (474)
....+.++||.|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence 3455677888888888888888888887776 566788888888888888888888888888776 56777888888888
Q ss_pred HHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHH
Q 011936 113 AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETIN 192 (474)
Q Consensus 113 a~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~ 192 (474)
+..|+.+++++|++ .+...+..|.+|+||||+|+..|+.+++++|+++|.+ ++.+|..|.||||+|+..++.++++
T Consensus 88 ~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 88 ALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 88888888888887 4455666777788888888888888888888887777 5777778888888888888888888
Q ss_pred Hhhhc
Q 011936 193 YLLVN 197 (474)
Q Consensus 193 ~Ll~~ 197 (474)
+|++.
T Consensus 164 ~L~~~ 168 (169)
T 2y1l_E 164 ILQKL 168 (169)
T ss_dssp HHHTC
T ss_pred HHHHc
Confidence 77753
No 66
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.3e-31 Score=244.41 Aligned_cols=192 Identities=18% Similarity=0.138 Sum_probs=159.3
Q ss_pred HHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCC
Q 011936 17 LLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD 96 (474)
Q Consensus 17 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~ 96 (474)
++.||+++.........+.+|.||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46778877655444455667889999999999999999999999877 77899999999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCChhHHHHH--HHcCCHHHHHHHHHhcCCCCcccccCC
Q 011936 97 MCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTT-IWNETVLHLC--VKHNQFEALKFLVSIMNDPDFLNAKDD 173 (474)
Q Consensus 97 ~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~~~l~~~~d~ 173 (474)
+ +.+|..|+||||+|+..|+.+++++|++.+ ...+..+ .+|+||||+| +..|+.+++++|++.|++ ++.+|.
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~ 154 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNS 154 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGG
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccC
Confidence 8 788999999999999999999999999954 4455554 6999999999 999999999999999998 678899
Q ss_pred CCCcHHHHHHhcCChHHHHHhhhccccc--cccccCCCCCHHHHHHh
Q 011936 174 YGMSILHLAVADKQIETINYLLVNTRVE--VNALNTHGYTALDILAQ 218 (474)
Q Consensus 174 ~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d--~n~~n~~g~Tpl~~a~~ 218 (474)
.|.|++|.++..... +.|++. |.+ ++.+|.+|.||||+|+.
T Consensus 155 ~~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~ 197 (229)
T 2vge_A 155 GAVYALWDYSAEFGD---ELSFRE-GESVTVLRRDGPEETDWWWAAL 197 (229)
T ss_dssp GEEEESSCBCCSSTT---BCCBCT-TCEEEEEESSCTTCSSEEEEEE
T ss_pred CchHHHHHHhhcccc---ccCccc-cccccccccCCCcccHHHHHHH
Confidence 999999966554433 456654 777 78899999999999988
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3e-28 Score=213.55 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=150.3
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHc
Q 011936 70 RGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKH 149 (474)
Q Consensus 70 ~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 149 (474)
.|.||||.|+..|+.++++.|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +...+..|..|+||||+|+.+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence 5889999999999999999999999886 77899999999999999999999999995 666778899999999999999
Q ss_pred CCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHH
Q 011936 150 NQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIA 229 (474)
Q Consensus 150 ~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~ 229 (474)
|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++..|.+|.||+|+|+. .++.+++
T Consensus 80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~~~~ 151 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVA----LGYRSVQ 151 (167)
T ss_dssp TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----HTCHHHH
T ss_pred CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----cCcHHHH
Confidence 999999999999998 789999999999999999999999999986 99999999999999999999 7789999
Q ss_pred HHHHhcCCcc
Q 011936 230 DSLRGAGAFK 239 (474)
Q Consensus 230 ~~L~~~ga~~ 239 (474)
++|.+++++.
T Consensus 152 ~~L~~~~~~~ 161 (167)
T 3v31_A 152 QVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1e-27 Score=210.83 Aligned_cols=160 Identities=30% Similarity=0.356 Sum_probs=147.5
Q ss_pred cCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHH
Q 011936 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLC 146 (474)
Q Consensus 67 ~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A 146 (474)
....+.+|||.|++.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. +...+..|..|+||||+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHH
Confidence 3566789999999999999999999999988 67899999999999999999999999994 566778899999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCch
Q 011936 147 VKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDL 226 (474)
Q Consensus 147 ~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~ 226 (474)
+..|+.+++++|++++.+ ++.+|.+|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|+. .++.
T Consensus 88 ~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~----~~~~ 159 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISID----NGNE 159 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCH
T ss_pred HHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH----hCCH
Confidence 999999999999999988 789999999999999999999999999987 99999999999999999999 7889
Q ss_pred HHHHHHHhcC
Q 011936 227 DIADSLRGAG 236 (474)
Q Consensus 227 ~i~~~L~~~g 236 (474)
+++++|++.|
T Consensus 160 ~~~~~L~~~G 169 (169)
T 2y1l_E 160 DLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHcC
Confidence 9999999876
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=7.4e-28 Score=207.99 Aligned_cols=149 Identities=23% Similarity=0.344 Sum_probs=80.6
Q ss_pred CHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCH
Q 011936 39 TPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRI 118 (474)
Q Consensus 39 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~ 118 (474)
||||.|+..|+.+++++|++.+++.. .|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChH
Confidence 45555555555555555555554431 3455555555555555555555555555554 34455555555555555555
Q ss_pred HHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHh
Q 011936 119 QVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYL 194 (474)
Q Consensus 119 ~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~L 194 (474)
+++++|++ .+...+..|..|+||||+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 55555555 2333444455555555555555555555555555555 455555555555555555555555543
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.3e-28 Score=213.87 Aligned_cols=157 Identities=27% Similarity=0.342 Sum_probs=87.2
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 011936 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAA 113 (474)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa 113 (474)
|.+|.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 4445566666666666666666666554444555556666666666666666666666666555 445555666666666
Q ss_pred HcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHH
Q 011936 114 MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINY 193 (474)
Q Consensus 114 ~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~ 193 (474)
..|+.+++++|++ .+...+..|.+|+||||+|+.+|+.+++++|+++|.+ ++.+|.+|+||||+|+. ++.+++++
T Consensus 84 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 84 SYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChHHHHH
Confidence 6555555555555 3333444455555555555555555555555555544 34455555555555433 44555555
Q ss_pred hhh
Q 011936 194 LLV 196 (474)
Q Consensus 194 Ll~ 196 (474)
|++
T Consensus 159 L~~ 161 (165)
T 3twr_A 159 LRG 161 (165)
T ss_dssp HHT
T ss_pred Hhh
Confidence 443
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.9e-27 Score=205.36 Aligned_cols=150 Identities=23% Similarity=0.305 Sum_probs=139.7
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.++|+.|+..|+.++++.|++.++.. ..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC----CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 58999999999999999999998754 25788999999999999999999999999887 77799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHH
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFL 158 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 158 (474)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. +...+..|.+|+||||+|+++|+.+++++|
T Consensus 78 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999998 77899999999999999999999999995 666788899999999999999999999987
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.3e-27 Score=206.95 Aligned_cols=151 Identities=25% Similarity=0.356 Sum_probs=83.6
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcC
Q 011936 3 SLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKG 82 (474)
Q Consensus 3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 82 (474)
|+||.|+..|+.+.++.|++..+ .+.+..|..|.||||+ +..|+.+++++|++.++++ +..|..|+||||+|+..|
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTC--CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred hHHHHHHHhCCHHHHHHHHHhhC--cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 55666666666666666665521 1223345555666666 5556666666666555554 444555566666666666
Q ss_pred CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHH
Q 011936 83 YVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVS 160 (474)
Q Consensus 83 ~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 160 (474)
+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++. ...+..|.+|+||||+|++.|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 666666666555554 44555555555555555555555555553 3444455555555555555555555555554
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=7.2e-28 Score=210.68 Aligned_cols=161 Identities=29% Similarity=0.316 Sum_probs=145.6
Q ss_pred cCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHH
Q 011936 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLC 146 (474)
Q Consensus 67 ~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A 146 (474)
.|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++. +...+..|.+|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence 3678899999999999999999999977666577888999999999999999999999994 566788899999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCch
Q 011936 147 VKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDL 226 (474)
Q Consensus 147 ~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~ 226 (474)
+..|+.+++++|++.+.+ ++.+|.+|+||||+|+..++.+++++|+++ |++++.+|.+|.||+|+|.+ ++.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-----~~~ 153 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-----GDT 153 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-----TCH
T ss_pred HHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-----CCh
Confidence 999999999999999998 788999999999999999999999999987 99999999999999999654 566
Q ss_pred HHHHHHHhcCC
Q 011936 227 DIADSLRGAGA 237 (474)
Q Consensus 227 ~i~~~L~~~ga 237 (474)
+++++|++.|+
T Consensus 154 ~i~~~L~~~gA 164 (165)
T 3twr_A 154 DIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 99999999886
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.4e-27 Score=205.31 Aligned_cols=154 Identities=25% Similarity=0.322 Sum_probs=142.6
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcC
Q 011936 37 HETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKG 116 (474)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g 116 (474)
+.||||.|+..|+.++++.|++..+...+..|..|+||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 46899999999999999999999544557889999999999 9999999999999999998 778999999999999999
Q ss_pred CHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhh
Q 011936 117 RIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196 (474)
Q Consensus 117 ~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 196 (474)
+.+++++|++ .+...+..|.+|+||||+|+++|+.+++++|++. .+ ++.+|.+|+||||+|+..++.+++++|++
T Consensus 80 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999999999 4566788899999999999999999999999998 66 78999999999999999999999999986
Q ss_pred c
Q 011936 197 N 197 (474)
Q Consensus 197 ~ 197 (474)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.7e-27 Score=210.01 Aligned_cols=164 Identities=21% Similarity=0.154 Sum_probs=149.8
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHH
Q 011936 69 SRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVK 148 (474)
Q Consensus 69 ~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 148 (474)
.++.+|||.|+..|+.++++.|++.++...+.+|..|.||||+|+..|+.+++++|++. +...+..|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence 46789999999999999999999997666688999999999999999999999999994 56678889999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHH
Q 011936 149 HNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDI 228 (474)
Q Consensus 149 ~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i 228 (474)
.|+.+++++|+++|.+ ++.+|.+|+||||+|+..++.+++++|+++ |++++..|..|.||+|+|.. .++.++
T Consensus 82 ~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~~ 153 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKA----PLRELL 153 (179)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCH----HHHHHH
T ss_pred cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHH----HHHHHH
Confidence 9999999999999998 789999999999999999999999999987 99999999999999999988 678899
Q ss_pred HHHHHhcCCcchh
Q 011936 229 ADSLRGAGAFKAI 241 (474)
Q Consensus 229 ~~~L~~~ga~~~~ 241 (474)
+++|.++|++...
T Consensus 154 ~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 154 RERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHTTCCCSC
T ss_pred HHHHHHhhcCccc
Confidence 9999999998753
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.2e-28 Score=229.58 Aligned_cols=179 Identities=21% Similarity=0.203 Sum_probs=86.6
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.+.++.|++++.++. .++.|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..
T Consensus 6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~----~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 6 QVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred cccCchhhhhhhHHHHHHHhccCCCcc----cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 356666666666666666666654331 2345566666666666666666666666544 45566666666666666
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCh-hHHHHH--HHcCCHHHHHHH
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNE-TVLHLC--VKHNQFEALKFL 158 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v~~L 158 (474)
|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++ +.+.+..+..|. ||||+| +.+|+.+++++|
T Consensus 81 g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 6666666666666665 45566666666666666666666666663 333444444443 666666 555666666666
Q ss_pred HHhcCCCCccccc------CCCCCcHHHHHHhcCC
Q 011936 159 VSIMNDPDFLNAK------DDYGMSILHLAVADKQ 187 (474)
Q Consensus 159 l~~~~~~~l~~~~------d~~g~t~Lh~A~~~~~ 187 (474)
++.+++.+..+.. |..+.++++++...|.
T Consensus 159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 6665553332222 5556666666555554
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.6e-29 Score=233.76 Aligned_cols=186 Identities=16% Similarity=0.050 Sum_probs=160.7
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASC 97 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 37899999999999999999998754 567899999999999999999999999999887 77899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHH--HHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHH
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVA--AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLV 159 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~A--a~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 159 (474)
|+.+++++|+++|+++....+.+|+||||+| +..|+.+++++|++. +...+..|..|.+++|.++..+.. ++|+
T Consensus 98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~---~~ll 173 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGD---ELSF 173 (229)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCSSTT---BCCB
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhcccc---ccCc
Confidence 9999999999999998444457999999999 999999999999995 445667788899999966555433 5667
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhh
Q 011936 160 SIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196 (474)
Q Consensus 160 ~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 196 (474)
+.|++.+ ++.+|.+|+||||+|+..|+.++++..+-
T Consensus 174 ~~ga~~~-~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 174 REGESVT-VLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp CTTCEEE-EEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred ccccccc-ccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 7666532 57899999999999999999999987553
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.7e-27 Score=220.31 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 011936 35 RHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAM 114 (474)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~ 114 (474)
..|+||||.|+..|+.+.++.|++++.++. .+..|.||||.|+..|+.++++.|+++|+++ +.+|..|+||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 458999999999999999999999998873 3578899999999999999999999999987 7889999999999999
Q ss_pred cCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCC-cHHHHH--HhcCChHHH
Q 011936 115 KGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGM-SILHLA--VADKQIETI 191 (474)
Q Consensus 115 ~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~-t~Lh~A--~~~~~~~iv 191 (474)
.|+.+++++|++. +...+..|.+|+||||+|+.+|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.+++
T Consensus 80 ~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 80 AGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred cCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999995 566788899999999999999999999999999998 688887777 999999 788999999
Q ss_pred HHhhhccccccccccC---------CCCCHHHHHHh
Q 011936 192 NYLLVNTRVEVNALNT---------HGYTALDILAQ 218 (474)
Q Consensus 192 ~~Ll~~~~~d~n~~n~---------~g~Tpl~~a~~ 218 (474)
++|++. +++++..|+ .+.++.+++..
T Consensus 156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~ 190 (239)
T 1ycs_B 156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMK 190 (239)
T ss_dssp HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred HHHHHh-hhcccccccceEEEEeccCCCCCCccccc
Confidence 999976 788777644 45555555443
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.3e-28 Score=243.58 Aligned_cols=217 Identities=16% Similarity=0.171 Sum_probs=159.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCcc--ccccCCCCchHHHHHH
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVL--AGELDSRGSSPLHMAA 79 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~ 79 (474)
+||||.|+..|+.++++.|++.+.........+..|.||||+|+..|+.++|++|++++++. .+..+.+ +||||+|+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 48999999999999999999987522111223456789999999999999999999999742 1111222 89999999
Q ss_pred hcCCHHHHHHHHhcCCCccc-cCCCCCCcHHHHHH-HcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHH
Q 011936 80 QKGYVDIVKELLQVNPDMCL-ARDVDGRNPLHVAA-MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKF 157 (474)
Q Consensus 80 ~~g~~~iv~~LL~~~~~~~~-~~d~~g~tpLh~Aa-~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 157 (474)
..|+.+++++|+++|+++.. ..|..|.||||+|+ .+|+.+++++|++. +. .|.||||+|+++|+.+++++
T Consensus 172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~evv~l 243 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKYVNPF 243 (376)
T ss_dssp HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTTHHHH
T ss_pred HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHHHHHH
Confidence 99999999999999998632 26778999999999 99999999999983 31 38899999999999999999
Q ss_pred HHHhcCCCCcccccCCCCCcHHHHHHhcCCh---------------------------HHHHHhhhcccccc----cccc
Q 011936 158 LVSIMNDPDFLNAKDDYGMSILHLAVADKQI---------------------------ETINYLLVNTRVEV----NALN 206 (474)
Q Consensus 158 Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~---------------------------~iv~~Ll~~~~~d~----n~~n 206 (474)
|++.+++ ++.+| ++++.|+..|+. +.+++|++...++. ....
T Consensus 244 L~~~ga~---~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~ 316 (376)
T 2aja_A 244 IARHVNR---LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316 (376)
T ss_dssp HHHHHHH---HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSST
T ss_pred HHhcCcc---ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCC
Confidence 9998865 33332 233444444433 34444544322211 1223
Q ss_pred CCCCCHHHHHHhccCCCCchHHHHHHHhcCCc
Q 011936 207 THGYTALDILAQSRRDIKDLDIADSLRGAGAF 238 (474)
Q Consensus 207 ~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~ 238 (474)
+.+.||+|+|+. .++.+++++|++.|.-
T Consensus 317 n~~~~~L~~A~~----~g~~e~v~lLl~~~~v 344 (376)
T 2aja_A 317 GDANELLRLALR----LGNQGACALLLSIPSV 344 (376)
T ss_dssp TCCCHHHHHHHH----HTCTTHHHHHTTSHHH
T ss_pred CCccHHHHHHHH----cCcHHHHHHHHcChHH
Confidence 456789999999 7788999999987643
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2e-25 Score=193.41 Aligned_cols=142 Identities=20% Similarity=0.180 Sum_probs=85.9
Q ss_pred cCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChh-HHHH
Q 011936 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNET-VLHL 145 (474)
Q Consensus 67 ~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t-~Lh~ 145 (474)
.+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+ .|+.+++++|++. +...+..|..|+| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHH
Confidence 3556666666666666666666666666655 455666666666663 6666666666663 4445566666776 7777
Q ss_pred HHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHH
Q 011936 146 CVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDI 215 (474)
Q Consensus 146 A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~ 215 (474)
|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+++ |++++..|..|.||.+-
T Consensus 85 A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C----------------
T ss_pred HHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCccccc
Confidence 7777777777777777777 677777788888888888888888877765 78888888888777663
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=7.2e-26 Score=202.13 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=82.6
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCH----HHHHHHHhcCCccccccCCCCchHHHHH
Q 011936 3 SLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHL----HFAKEILRRTPVLAGELDSRGSSPLHMA 78 (474)
Q Consensus 3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 78 (474)
++|+.|++.|+.+.++.+++.+.+.. .+..|+||||+|+..|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~----~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYEDK----ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSCH----HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCcccc----cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 45555666666666555555543221 113455666666655543 3555555555554 44455555666655
Q ss_pred HhcCC------HHHHHHHHhcCCCccccCCCCCC-cHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCC
Q 011936 79 AQKGY------VDIVKELLQVNPDMCLARDVDGR-NPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQ 151 (474)
Q Consensus 79 ~~~g~------~~iv~~LL~~~~~~~~~~d~~g~-tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 151 (474)
+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..|..+ .++
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~-----------------------------~~~ 132 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDE-----------------------------NEM 132 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCH-----------------------------HHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCCh-----------------------------hhH
Confidence 55554 34555555555555 44555555 5555555533210 112
Q ss_pred HHHHHHHHH-hcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhh
Q 011936 152 FEALKFLVS-IMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196 (474)
Q Consensus 152 ~~~v~~Ll~-~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 196 (474)
.+++++|++ +|++ ++.+|.+|+||||+|+..++.+++++|..
T Consensus 133 ~~iv~~Ll~~~gad---~~~~d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 133 IPLYKLIFSQSGLQ---LLIKDKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp HHHHHHHHTSTTCC---TTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345555555 5555 45555666666666666666655555553
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=7.9e-25 Score=185.03 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=94.2
Q ss_pred hhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCC-CCcHH
Q 011936 31 VVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVD-GRNPL 109 (474)
Q Consensus 31 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~-g~tpL 109 (474)
+..+..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+. |+.+++++|+++|+++ +.+|.. |.|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 345667777777777777777777777777665 5667777777777777 7777777777777776 556666 77777
Q ss_pred HHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCC
Q 011936 110 HVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164 (474)
Q Consensus 110 h~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 164 (474)
|+|+..|+.+++++|++ .+...+..|..|+||||+|+++++.+++++|+++|++
T Consensus 83 ~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 77777777777777777 3445566667777777777777777777777776653
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.9e-25 Score=199.30 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=132.9
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCH----HHHHHHHhcCCCccccCCCCCCcHHHHH
Q 011936 37 HETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYV----DIVKELLQVNPDMCLARDVDGRNPLHVA 112 (474)
Q Consensus 37 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~----~iv~~LL~~~~~~~~~~d~~g~tpLh~A 112 (474)
+.++||.|+..|+.+.++.+++.+.+. ..|..|+||||+|+..|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 457888888888888888888876543 2136788888888888875 4888888888887 67788888888888
Q ss_pred HHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCC-cHHHHHHhcCC----
Q 011936 113 AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGM-SILHLAVADKQ---- 187 (474)
Q Consensus 113 a~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~-t~Lh~A~~~~~---- 187 (474)
+..|+.++.+ ..+++++|+++|++ +|.+|.+|+ ||||+|+..+.
T Consensus 83 ~~~~~~~~~~----------------------------~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~ 131 (186)
T 3t8k_A 83 FQGGGNDITG----------------------------TTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENE 131 (186)
T ss_dssp HHHCTTCHHH----------------------------HHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHH
T ss_pred HHcCCcchhh----------------------------HHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhh
Confidence 8777544321 24788999999999 899999999 99999998543
Q ss_pred -hHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcc
Q 011936 188 -IETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 188 -~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~ 239 (474)
.+++++|+++.|+|+|.+|..|.||||+|++ .++.+++++|.+...+.
T Consensus 132 ~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~----~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR----CQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 4689999984599999999999999999998 78889999998765443
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=4.1e-25 Score=191.41 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=116.5
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCc-HHHH
Q 011936 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRN-PLHV 111 (474)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~t-pLh~ 111 (474)
.+..|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+ .|+.+++++|+++|+++ +.+|..|.| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 5677999999999999999999999998876 777999999999985 99999999999999998 788999999 9999
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHH
Q 011936 112 AAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLA 182 (474)
Q Consensus 112 Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A 182 (474)
|+..|+.+++++|+++ +...+..|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|.|+.+-+
T Consensus 85 A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred HHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence 9999999999999995 566788899999999999999999999999999999 788999999998744
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.5e-24 Score=183.28 Aligned_cols=130 Identities=23% Similarity=0.247 Sum_probs=110.2
Q ss_pred cccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCC-ChhHH
Q 011936 65 GELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIW-NETVL 143 (474)
Q Consensus 65 ~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~-g~t~L 143 (474)
+..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+. |+.+++++|++. +...+..|.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCHH
Confidence 667888999999999999999999999998887 6778889999999999 999999999985 4456677777 88899
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccc
Q 011936 144 HLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVE 201 (474)
Q Consensus 144 h~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d 201 (474)
|+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+++ |+|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 999988888899988888887 678888888888888888888888888865 543
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=2.3e-23 Score=172.78 Aligned_cols=126 Identities=35% Similarity=0.544 Sum_probs=90.3
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
+|+||||.|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 4677777777777777777777777665 556777777777777777777777777777766 55667777777777777
Q ss_pred CCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCC
Q 011936 116 GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMND 164 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 164 (474)
|+.+++++|++. +...+..|..|+||||+|+..|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 777777777773 444556666777777777777777777777776653
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.1e-23 Score=177.97 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=83.4
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHH
Q 011936 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAA 113 (474)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa 113 (474)
...+.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence 344667777777777777777777776665 555667777777777777777777777776665 456666777777777
Q ss_pred HcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 114 MKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 114 ~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
..|+.+++++|++. +...+..|.+|+||||+|+++|+.+++++|+++
T Consensus 89 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 89 FIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 77777777766663 444555566666666666666666666666654
No 88
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1.1e-25 Score=222.50 Aligned_cols=180 Identities=13% Similarity=0.133 Sum_probs=133.5
Q ss_pred HHHHHH-cCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCcc--ccccCCCCchHHHHHHhc
Q 011936 5 LYEASV-EGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVL--AGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 5 L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~ 81 (474)
++.|.. .++.+.++.+++++ .+++||||+|+..|+.++|++|+++++.. ....|..|.||||+|+..
T Consensus 69 ~~~a~~~~~~~~~~~~l~~~g----------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 69 LYYAHYNRNAKQLWSDAHKKG----------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHTTTTCTTHHHHHHHHT----------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHcC----------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 344444 35555555555544 33469999999999999999999887622 123456788999999999
Q ss_pred CCHHHHHHHHhcCCCcc--ccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccc--cCCCChhHHHHHH-HcCCHHHHH
Q 011936 82 GYVDIVKELLQVNPDMC--LARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYS--TTIWNETVLHLCV-KHNQFEALK 156 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~--~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~--~d~~g~t~Lh~A~-~~~~~~~v~ 156 (474)
|+.++|++|+++|++.. ...+.+ .||||+|+..|+.+++++|++.++ .... .|..|+||||+|+ ++|+.++++
T Consensus 139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga-~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAP-TEATAMIQAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCG-GGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCC-ccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence 99999999999997521 222333 899999999999999999999544 3333 6777899999999 999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccC
Q 011936 157 FLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNT 207 (474)
Q Consensus 157 ~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~ 207 (474)
+|++.|+ .|+||||+|+..|+.+++++|+++ |.+++..+.
T Consensus 217 ~Ll~~ga----------~~~taL~~Aa~~g~~evv~lL~~~-ga~~~~~~~ 256 (376)
T 2aja_A 217 FLLDCPV----------MLAYAEIHEFEYGEKYVNPFIARH-VNRLKEMHD 256 (376)
T ss_dssp HHTTSHH----------HHHHHHHCTTTTTTTTHHHHHHHH-HHHHHHHHT
T ss_pred HHHhCCC----------ccchHHHHHHHCCCHHHHHHHHhc-CcccccccH
Confidence 9988553 278999999999999999988876 777765543
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=6.5e-23 Score=170.05 Aligned_cols=125 Identities=35% Similarity=0.565 Sum_probs=100.6
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHc
Q 011936 70 RGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKH 149 (474)
Q Consensus 70 ~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 149 (474)
+|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++ .+...+..|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHc
Confidence 4788888888888888888888888877 5677888888888888888888888888 4455666777788888888888
Q ss_pred CCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhcccc
Q 011936 150 NQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRV 200 (474)
Q Consensus 150 ~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 200 (474)
|+.+++++|++++.+ ++.+|.+|+||||+|+..++.+++++|+++ |+
T Consensus 79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GA 125 (126)
T ss_dssp TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CC
Confidence 888888888888777 667778888888888888888888888765 44
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.1e-23 Score=172.96 Aligned_cols=121 Identities=25% Similarity=0.344 Sum_probs=113.3
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence 58999999999999999999998754 457889999999999999999999999999887 67799999999999999
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRA 127 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~ 127 (474)
|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.
T Consensus 91 ~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 91 GHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999998 77899999999999999999999999984
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=5e-24 Score=189.72 Aligned_cols=111 Identities=26% Similarity=0.252 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCChhHHHHH
Q 011936 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTT-IWNETVLHLC 146 (474)
Q Consensus 68 d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d-~~g~t~Lh~A 146 (474)
|.+|+||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|+..|+.+++++|++. +...+..| .+|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHH
Confidence 3445555555555555555555555 4444 44555555555555555555555555553 23333333 5555666666
Q ss_pred HHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHh
Q 011936 147 VKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVA 184 (474)
Q Consensus 147 ~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~ 184 (474)
+..|+.+++++|+++|++ ++.+|.+|+||||+|+.
T Consensus 118 ~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 118 AGYVRPEVVEALVELGAD---IEVEDERGLTALELARE 152 (183)
T ss_dssp HHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHH
Confidence 666666666666665555 45555666666666654
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=2.9e-24 Score=200.45 Aligned_cols=171 Identities=20% Similarity=0.140 Sum_probs=116.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
.+.+++.+++..|+.+.++.+.... ...+.+|.||||+|+..|+.++++.|++ ++++ +.+|..|+||||+|+..
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~ 87 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL 87 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSC----HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred CCccHHHHHHHcCCCcccccccccc----cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence 3455666666666655444333322 2224567778888888788888877777 6665 56777777888888888
Q ss_pred CCHHHHHHHHHhCCCcccccC-CCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHh
Q 011936 116 GRIQVLVELFRARPFAAYSTT-IWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYL 194 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~L 194 (474)
|+.+++++|++. +...+..+ ..|+||||+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..++
T Consensus 88 g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~------- 156 (244)
T 3ui2_A 88 GSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------- 156 (244)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHh-------
Confidence 888888777774 44444444 6677888888888888888888877777 67777788888888864211
Q ss_pred hhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCc
Q 011936 195 LVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAF 238 (474)
Q Consensus 195 l~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~ 238 (474)
+..+.||+++|+. .+..+++++|.+++..
T Consensus 157 -----------~~~~~~~l~~a~~----~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 -----------TTPKGNPMQFGRR----IGLEKVINVLEGQVFE 185 (244)
T ss_dssp -----------TCCCSSHHHHHHH----HHHHHHHHHHHHHHEE
T ss_pred -----------ccCCCCHHHHHHH----cChHHHHHHHHHhccc
Confidence 2456788888777 5667778887776554
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=6.4e-23 Score=173.38 Aligned_cols=124 Identities=26% Similarity=0.331 Sum_probs=71.7
Q ss_pred cCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHH
Q 011936 67 LDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLC 146 (474)
Q Consensus 67 ~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A 146 (474)
+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++ .+...+..|..|+||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHHH
Confidence 3555566666666666666666666655555 4455555666666666666666655555 3334445555566666666
Q ss_pred HHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 147 VKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 147 ~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
++.|+.+++++|+++|++ ++.+|.+|+||||+|+..+..+++++|.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 666666666666666555 4556666666666666555555555443
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=2.1e-22 Score=179.22 Aligned_cols=141 Identities=21% Similarity=0.141 Sum_probs=110.3
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCC-CCCCcHHHH
Q 011936 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARD-VDGRNPLHV 111 (474)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d-~~g~tpLh~ 111 (474)
.+..|+||||+|+..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+| ..|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 34567888888888888888888888 6554 667888888888888888888888888888887 4445 788888888
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHH
Q 011936 112 AAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETI 191 (474)
Q Consensus 112 Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv 191 (474)
|+..|+.+++++|++. +...+.+|.+|+||||+|++.++. ..+.++|++|+..|+.+++
T Consensus 117 A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~i~ 175 (183)
T 3deo_A 117 AAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVI 175 (183)
T ss_dssp HHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHHHH
Confidence 8888888888888885 455677788888888888875443 1246788888888888888
Q ss_pred HHhhhc
Q 011936 192 NYLLVN 197 (474)
Q Consensus 192 ~~Ll~~ 197 (474)
++|.++
T Consensus 176 ~~L~~~ 181 (183)
T 3deo_A 176 NVLEGQ 181 (183)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 877653
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.7e-22 Score=187.06 Aligned_cols=140 Identities=21% Similarity=0.142 Sum_probs=122.1
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCC-CCCCcHHHHH
Q 011936 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARD-VDGRNPLHVA 112 (474)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d-~~g~tpLh~A 112 (474)
+..|+||||+|+..|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+| ..|+||||+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 4568999999999999999999999 6665 778999999999999999999999999999998 4455 8899999999
Q ss_pred HHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHH
Q 011936 113 AMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETIN 192 (474)
Q Consensus 113 a~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~ 192 (474)
+..|+.+++++|+++ +...+..|..|+||||+|++.++. ..+.||||+|+..|+.++++
T Consensus 119 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~--------------------~~~~~~l~~a~~~g~~~iv~ 177 (244)
T 3ui2_A 119 AGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVIN 177 (244)
T ss_dssp HHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHTT--------------------CCCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHhc--------------------cCCCCHHHHHHHcChHHHHH
Confidence 999999999999994 667788899999999999874432 23689999999999999999
Q ss_pred Hhhhc
Q 011936 193 YLLVN 197 (474)
Q Consensus 193 ~Ll~~ 197 (474)
+|++.
T Consensus 178 ~L~~~ 182 (244)
T 3ui2_A 178 VLEGQ 182 (244)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=6.7e-23 Score=188.18 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=109.2
Q ss_pred ccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHH
Q 011936 66 ELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHL 145 (474)
Q Consensus 66 ~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~ 145 (474)
..|..|.||||+|+..|+.++++.|++.|+++ +.+|..|+||||+|+..|+.+++++|++..+...+..|.+|+||||+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 34667889999999999999999999999887 67888999999999999999999999986577788888999999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCC
Q 011936 146 CVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGY 210 (474)
Q Consensus 146 A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~ 210 (474)
|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.++++.|+.. +++.+..|.+|.
T Consensus 147 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~~ 207 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAEDY 207 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred HHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhhh
Confidence 9999999999999999888 678889999999999999999998888865 666666665543
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=192.76 Aligned_cols=139 Identities=16% Similarity=0.065 Sum_probs=108.6
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhcCCCcccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCcccccCCCCh
Q 011936 69 SRGSSPLHMAAQKGYVDIVKELLQVNPDMCLA-----RDVDGRNPLHVAAMK---GRIQVLVELFRARPFAAYSTTIWNE 140 (474)
Q Consensus 69 ~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~-----~d~~g~tpLh~Aa~~---g~~~~~~~Ll~~~~~~~~~~d~~g~ 140 (474)
..+.++||.|+..|+.+.++.|++.|+++... .|..|.||||+|+.. |+.+++++|++. +..++..|.+|+
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~ 227 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGN 227 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCC
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCC
Confidence 33557788888888888888888888887432 577888888888886 788888888885 455677788888
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHh
Q 011936 141 TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQ 218 (474)
Q Consensus 141 t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~ 218 (474)
||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|++. +.+ .|.||||+|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYS 295 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC----
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHh
Confidence 888888888888888888888888 678888888888888888888888888866 665 47888888876
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=193.37 Aligned_cols=144 Identities=18% Similarity=0.115 Sum_probs=122.8
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcCCccccc-----cCCCCchHHHHHHhc---CCHHHHHHHHhcCCCccccCCCCC
Q 011936 34 NRHHETPLHVAALRGHLHFAKEILRRTPVLAGE-----LDSRGSSPLHMAAQK---GYVDIVKELLQVNPDMCLARDVDG 105 (474)
Q Consensus 34 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~iv~~LL~~~~~~~~~~d~~g 105 (474)
...+.++||.|+..|+.+.++.|++.++++... .|..|+||||+|+.. |+.+++++|+++|+++ +.+|.+|
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G 226 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG 226 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence 445678999999999999999999999887432 588999999999997 8999999999999988 7789999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhc
Q 011936 106 RNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185 (474)
Q Consensus 106 ~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~ 185 (474)
+||||+|+..|+.+++++|++ .+.+.+.+|.+|+||||+|+..|+.+++++|++.+++ .|.||||+|+..
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSW 296 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-----
T ss_pred CCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhc
Confidence 999999999999999999999 5667888999999999999999999999999999876 379999999998
Q ss_pred CCh
Q 011936 186 KQI 188 (474)
Q Consensus 186 ~~~ 188 (474)
|+.
T Consensus 297 g~~ 299 (301)
T 2b0o_E 297 VIS 299 (301)
T ss_dssp ---
T ss_pred CCc
Confidence 864
No 99
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.7e-22 Score=170.80 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=113.8
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHH
Q 011936 100 ARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSIL 179 (474)
Q Consensus 100 ~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~L 179 (474)
.+|.+|+||||+|+..|+.+++++|++ .+...+..|..|+||||+|+..|+.+++++|++++.+ ++.+|.+|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence 578999999999999999999999999 4566778899999999999999999999999999988 789999999999
Q ss_pred HHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCC
Q 011936 180 HLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGA 237 (474)
Q Consensus 180 h~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga 237 (474)
|+|+..++.+++++|++. |++++.+|..|.||+|+|.. .+..+++++|.+.+.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCC----HHHHHHHSCC-----
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhh----ccHHHHHhhcccccc
Confidence 999999999999999977 99999999999999999887 556666666655443
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.9e-22 Score=165.26 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 011936 35 RHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAM 114 (474)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~ 114 (474)
..|+||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 34455555555555555555555555443 444555555555555555555555555555554 3444555555555555
Q ss_pred cCCHHHHHHHHHhCCCcccccCCCChhHHHHH
Q 011936 115 KGRIQVLVELFRARPFAAYSTTIWNETVLHLC 146 (474)
Q Consensus 115 ~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A 146 (474)
.|+.+++++|++. +...+..|.+|+||||+|
T Consensus 83 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence 5555555555542 233344444444444444
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=1.9e-22 Score=185.17 Aligned_cols=137 Identities=26% Similarity=0.287 Sum_probs=112.9
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHH
Q 011936 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQV-NPDMCLARDVDGRNPLHV 111 (474)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~-~~~~~~~~d~~g~tpLh~ 111 (474)
.+..|.||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+++ |+++ +.+|..|+||||+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA 146 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence 4556899999999999999999999999887 77899999999999999999999999999 7777 7899999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccC
Q 011936 112 AAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKD 172 (474)
Q Consensus 112 Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d 172 (474)
|+..|+.+++++|++. +...+.+|.+|+||||+|+..++.++++.+++.++...+.+..+
T Consensus 147 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 9999999999999996 56678899999999999999999999999999988755444433
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=7.2e-22 Score=163.62 Aligned_cols=112 Identities=23% Similarity=0.239 Sum_probs=90.9
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHH
Q 011936 68 DSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCV 147 (474)
Q Consensus 68 d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 147 (474)
+..|.||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++ .+...+..|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence 567888999999999999999999888877 6778888888888888888888888887 45556777888888888888
Q ss_pred HcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHh
Q 011936 148 KHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVA 184 (474)
Q Consensus 148 ~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~ 184 (474)
..|+.+++++|+++|++ ++.+|.+|.||||+|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCC
Confidence 88888888888888877 67788888888888843
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=1.8e-20 Score=184.50 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCCchHHHHHHhc-CCHHHHHHHHhcCCCccccCC--CCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHH
Q 011936 69 SRGSSPLHMAAQK-GYVDIVKELLQVNPDMCLARD--VDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHL 145 (474)
Q Consensus 69 ~~g~tpLh~A~~~-g~~~iv~~LL~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~ 145 (474)
..+.|+||.|+.. |+.++++.|+++|+++ +..+ ..|.||||+|+..|+.+++++|++ .+..++..|.+|+||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Confidence 3455666666666 6666666666666666 3444 566666766666666666666666 344555666666677777
Q ss_pred HHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhcc--ccccccccCCCCCHHHHHHh
Q 011936 146 CVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNT--RVEVNALNTHGYTALDILAQ 218 (474)
Q Consensus 146 A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~--~~d~n~~n~~g~Tpl~~a~~ 218 (474)
|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+... ..+....+..+.|+++++..
T Consensus 275 A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 7766777777777766666 5666666777777777777777666666432 22333445566666666544
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=4.7e-20 Score=175.20 Aligned_cols=127 Identities=23% Similarity=0.260 Sum_probs=114.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCc-----ccccCCCChhHHHHHHHc---CCHHHHHHHHHhcCCCCcccccCCCCC
Q 011936 105 GRNPLHVAAMKGRIQVLVELFRARPFA-----AYSTTIWNETVLHLCVKH---NQFEALKFLVSIMNDPDFLNAKDDYGM 176 (474)
Q Consensus 105 g~tpLh~Aa~~g~~~~~~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~~~~~~l~~~~d~~g~ 176 (474)
..++|+.|+..|+.+.++.+++.+.+. .+..|..|+||||+|+.. |+.+++++|+++|++ ++.+|.+|+
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~ 206 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCC
Confidence 357899999999999999999866554 334478899999999999 899999999999998 789999999
Q ss_pred cHHHHHHhcCChHHHHHhhhccccccccccCCCCCHHHHHHhccCCCCchHHHHHHHhcCCcc
Q 011936 177 SILHLAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFK 239 (474)
Q Consensus 177 t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~n~~g~Tpl~~a~~~~~~~~~~~i~~~L~~~ga~~ 239 (474)
||||+|+..|+.+++++|+++ |+|++.+|.+|.||||+|+. .++.+++++|+++|+..
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGR 264 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence 999999999999999999986 99999999999999999999 77889999999998864
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.1e-19 Score=142.41 Aligned_cols=90 Identities=41% Similarity=0.675 Sum_probs=66.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 36 HHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 36 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
+|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 3677777777777777777777777665 566777777777777777777777777777776 56677777777777777
Q ss_pred CCHHHHHHHHHh
Q 011936 116 GRIQVLVELFRA 127 (474)
Q Consensus 116 g~~~~~~~Ll~~ 127 (474)
|+.+++++|++.
T Consensus 79 ~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 79 GHLEVVKLLLEA 90 (93)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHc
Confidence 777777777764
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1e-19 Score=179.04 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=59.0
Q ss_pred CHHHHHHhc-CCHHHHHHHHhcCCccccccC--CCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHc
Q 011936 39 TPLHVAALR-GHLHFAKEILRRTPVLAGELD--SRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMK 115 (474)
Q Consensus 39 t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~ 115 (474)
|+||.|+.. |+.++++.|+++++++ +..| .+|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 445555554 5555555555544444 2333 44455555555555555555555555444 34444555555555555
Q ss_pred CCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhc
Q 011936 116 GRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIM 162 (474)
Q Consensus 116 g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 162 (474)
|+.+++++|+++ +...+..|.+|+||||+|+..++.+++++|++.+
T Consensus 279 g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 279 GHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 555555555542 3334444445555555555555555555554444
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.5e-19 Score=186.15 Aligned_cols=127 Identities=17% Similarity=0.099 Sum_probs=78.4
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCCccccC------CCCCCcHHHHHHH---cCCHHHHHHHHHhCCCcccccCCCChhHH
Q 011936 73 SPLHMAAQKGYVDIVKELLQVNPDMCLAR------DVDGRNPLHVAAM---KGRIQVLVELFRARPFAAYSTTIWNETVL 143 (474)
Q Consensus 73 tpLh~A~~~g~~~iv~~LL~~~~~~~~~~------d~~g~tpLh~Aa~---~g~~~~~~~Ll~~~~~~~~~~d~~g~t~L 143 (474)
+.||.|+..|+.++++.|+++|+++ +.+ |..|.||||+|+. .|+.+++++|++. +.+++..|.+|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCccCCCCCcHH
Confidence 5566666666666666666666665 222 5566666666644 6666666666663 344556666666666
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhccccccccc
Q 011936 144 HLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVNTRVEVNAL 205 (474)
Q Consensus 144 h~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~d~n~~ 205 (474)
|+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++ |++++..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~ 269 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFAF 269 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC-----
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 666666666666666666666 566666666666666666666666666654 6666653
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=4.1e-19 Score=168.66 Aligned_cols=125 Identities=17% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhcCCCcc-----ccCCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCcccccCCCCh
Q 011936 69 SRGSSPLHMAAQKGYVDIVKELLQVNPDMC-----LARDVDGRNPLHVAAMK---GRIQVLVELFRARPFAAYSTTIWNE 140 (474)
Q Consensus 69 ~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~-----~~~d~~g~tpLh~Aa~~---g~~~~~~~Ll~~~~~~~~~~d~~g~ 140 (474)
....++|+.|+..|+.+.++.+++.|++.. ...|..|+||||+|+.. |+.+++++|++. +..++..|.+|+
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~ 206 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCC
T ss_pred chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCC
Confidence 344566666666666666666666666542 22355666666666666 666666666663 344555666666
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhhc
Q 011936 141 TVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLLVN 197 (474)
Q Consensus 141 t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 197 (474)
||||+|+.+|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|++.
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 666666666666666666666666 566666666666666666666666666654
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=2.2e-19 Score=184.88 Aligned_cols=140 Identities=19% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCHHHHHHhcCCHHHHHHHHhcCCcccccc------CCCCchHHHHHHh---cCCHHHHHHHHhcCCCccccCCCCCCcH
Q 011936 38 ETPLHVAALRGHLHFAKEILRRTPVLAGEL------DSRGSSPLHMAAQ---KGYVDIVKELLQVNPDMCLARDVDGRNP 108 (474)
Q Consensus 38 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~LL~~~~~~~~~~d~~g~tp 108 (474)
.+.||.|+..|+.+.++.|++.++++ +.. |..|+||||+|+. .|+.+++++|+++|+++ +.+|.+|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 35667777777777777777666654 222 5566677777744 66677777777766666 5566667777
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHH
Q 011936 109 LHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAV 183 (474)
Q Consensus 109 Lh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~ 183 (474)
||+|+..|+.+++++|++ .+.+.+..|.+|+||||+|+..|+.+++++|+++|++ .+..+....+++..+.
T Consensus 211 Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---~~~~~~h~~~~~~~~~ 281 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---TFAFPLHVDYSWVIST 281 (497)
T ss_dssp HHHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC---CCCCcceeeccccCCC
Confidence 777777777777777666 3455666666677777777777777777777776666 3444445555544443
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.8e-19 Score=140.15 Aligned_cols=93 Identities=33% Similarity=0.545 Sum_probs=73.8
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHc
Q 011936 70 RGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKH 149 (474)
Q Consensus 70 ~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 149 (474)
+|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++ .+...+.+|.+|+||||+|++.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence 4788888888888888888888888887 6778888888888888888888888888 4455667777888888888888
Q ss_pred CCHHHHHHHHHhcCC
Q 011936 150 NQFEALKFLVSIMND 164 (474)
Q Consensus 150 ~~~~~v~~Ll~~~~~ 164 (474)
|+.+++++|++.|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 888888888877653
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=3.6e-19 Score=145.34 Aligned_cols=61 Identities=38% Similarity=0.573 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCC
Q 011936 35 RHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD 96 (474)
Q Consensus 35 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~ 96 (474)
.+|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 67 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 33334444444444444444443333332 23333333333333333333333333333333
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=5.3e-19 Score=144.34 Aligned_cols=109 Identities=30% Similarity=0.344 Sum_probs=97.7
Q ss_pred ccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHH
Q 011936 66 ELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHL 145 (474)
Q Consensus 66 ~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~ 145 (474)
.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. +...+..|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHH
Confidence 35889999999999999999999999999987 67899999999999999999999999994 56677888999999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHH
Q 011936 146 CVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSIL 179 (474)
Q Consensus 146 A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~L 179 (474)
|+..++.+++++|+++|++ ++.++..|.+|-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGAD---VNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSS---HHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCC---CCcCCccccccc
Confidence 9999999999999999999 788999998874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=3.2e-17 Score=132.75 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHH
Q 011936 33 ANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVA 112 (474)
Q Consensus 33 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~A 112 (474)
.+.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS 97 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence 4556667777777777777777777666655 455666777777777777777777777766665 55666667777777
Q ss_pred HHcCCHHHHHHH
Q 011936 113 AMKGRIQVLVEL 124 (474)
Q Consensus 113 a~~g~~~~~~~L 124 (474)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 777666666654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=9.5e-17 Score=129.89 Aligned_cols=95 Identities=24% Similarity=0.350 Sum_probs=74.3
Q ss_pred ccccccCCCCchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChh
Q 011936 62 VLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNET 141 (474)
Q Consensus 62 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t 141 (474)
......|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++. +...+..|..|+|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t 92 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKT 92 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCc
Confidence 344566888999999999999999999999988887 66788888888888888888888888884 5556777788888
Q ss_pred HHHHHHHcCCHHHHHHH
Q 011936 142 VLHLCVKHNQFEALKFL 158 (474)
Q Consensus 142 ~Lh~A~~~~~~~~v~~L 158 (474)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 88888888888888775
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=72.04 E-value=4.9 Score=38.23 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=101.7
Q ss_pred HHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCc--cccccCCCCchHHHHHHhcCCHH
Q 011936 8 ASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPV--LAGELDSRGSSPLHMAAQKGYVD 85 (474)
Q Consensus 8 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~~ 85 (474)
....++.+..+.+++.-..-......|.+|+..+.-....|+.+....+++.-.. ..-..|..|.-.+..+......+
T Consensus 44 ~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 44 KLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSD 123 (351)
T ss_dssp HHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred HHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH
Confidence 3444555544444443111122245788888888888888888777777664221 11233677777777777766665
Q ss_pred HHHHHHhc--CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCc--ccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 86 IVKELLQV--NPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFA--AYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 86 iv~~LL~~--~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
-...+++. +.-.....|..|+..+......+..+..+.+++.-... .-..+..|...+.-+.+....+-...+++.
T Consensus 124 ~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~ 203 (351)
T 3gvo_A 124 QQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE 203 (351)
T ss_dssp HHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHH
Confidence 54444442 11112345677777777666666555445555432111 112344565566555555544333333322
Q ss_pred cCCCCcccccCCCCCcHHHHHHhcCChHHHHHhhh
Q 011936 162 MNDPDFLNAKDDYGMSILHLAVADKQIETINYLLV 196 (474)
Q Consensus 162 ~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 196 (474)
.......-.+|.+||-.+......+..+..+.+++
T Consensus 204 l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 204 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp HHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHH
Confidence 11111123567778888877777776665555553
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=62.53 E-value=42 Score=28.26 Aligned_cols=133 Identities=16% Similarity=0.101 Sum_probs=80.2
Q ss_pred CCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHH-HHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcC
Q 011936 38 ETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPL-HMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKG 116 (474)
Q Consensus 38 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL-h~A~~~g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g 116 (474)
++=+-.|...|+++.+..+.+... +..-|.-| ..|...|+.++++.-.++-.|.. ..+.+....|
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~--------~L~~Ly~~tg 74 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHSFD--------KLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------HHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH--------HHHHHHHHhC
Confidence 455778888888888877765421 12223333 34667888888888777655441 2344555567
Q ss_pred CHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCH-HHHHHHHHhcCCCCcccccCCCCCcHHHHHHhcCChHHHHHhh
Q 011936 117 RIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQF-EALKFLVSIMNDPDFLNAKDDYGMSILHLAVADKQIETINYLL 195 (474)
Q Consensus 117 ~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 195 (474)
+.+-++.+.+.. ....+-..++|.+...|+. +++++|.+.+..+ -+...|..+|..+..+.++
T Consensus 75 ~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----------eA~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 75 DVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP-----------LAYAVAKANGDEAAASAFL 138 (177)
T ss_dssp CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----------HHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH-----------HHHHHHHHcCcHHHHHHHH
Confidence 777666665411 1123345677788777776 4777776644321 2455666677777777777
Q ss_pred hcccc
Q 011936 196 VNTRV 200 (474)
Q Consensus 196 ~~~~~ 200 (474)
+..|.
T Consensus 139 ~~~~~ 143 (177)
T 3mkq_B 139 EQAEV 143 (177)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 65433
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=57.56 E-value=14 Score=34.94 Aligned_cols=159 Identities=8% Similarity=0.046 Sum_probs=88.2
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhcCC-cc-ccccCCCCchHHHHHHhcCCHHHHHHHHhcCCC--ccccCCCCCCc
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRRTP-VL-AGELDSRGSSPLHMAAQKGYVDIVKELLQVNPD--MCLARDVDGRN 107 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~-~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~~~~--~~~~~d~~g~t 107 (474)
..+..|.-.+..+......+-...+++.-. .. .-..|..|+..+......+..+..+.+++.-.. .....+..|..
T Consensus 104 ~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~ 183 (351)
T 3gvo_A 104 ALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCR 183 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHH
T ss_pred hhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHH
Confidence 466777777777777777665555554321 11 112367777777766665554443444432111 11124555655
Q ss_pred HHHHHHHcCCHHHHHHHHHh--CCCcccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhc
Q 011936 108 PLHVAAMKGRIQVLVELFRA--RPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185 (474)
Q Consensus 108 pLh~Aa~~g~~~~~~~Ll~~--~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~ 185 (474)
.+..+......+-...+++. .....-..|.+|.-.+....+.+..+..+.+++.....-.--..++.|...+.-+...
T Consensus 184 Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~ 263 (351)
T 3gvo_A 184 VIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH 263 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 55555555444333333321 1122234578888889999998888777777765432211234566777777777666
Q ss_pred CChHH
Q 011936 186 KQIET 190 (474)
Q Consensus 186 ~~~~i 190 (474)
+..+.
T Consensus 264 ~~~~~ 268 (351)
T 3gvo_A 264 ASRAE 268 (351)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 65543
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=57.21 E-value=52 Score=27.67 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=88.6
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCccccccCCCCchHHHHHHhc
Q 011936 2 ESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVLAGELDSRGSSPLHMAAQK 81 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 81 (474)
++.+-.|...|+++....+.+.-.. ....+..=..|...|+.++++.-..+-.+. ...+.+....
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~-------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~t 73 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND-------SITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC-------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHh
Confidence 4678899999999999888764210 011233446788899999999998876655 2345666678
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCcccccCCCChhHHHHHHHcCCHHHHHHHHHh
Q 011936 82 GYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSI 161 (474)
Q Consensus 82 g~~~iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 161 (474)
|+.+-++.|.+.- ....+-+..+|.+-..|+++-...++...+. -.-+...|-.+|..++.+-+++.
T Consensus 74 g~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 74 GDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp TCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 8888777765431 1122345678888889997655555542221 12356777889999998888864
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=57.19 E-value=5.1 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=15.0
Q ss_pred chHHHHHHHcCCHHHHHHHHh
Q 011936 2 ESLLYEASVEGNITTLLQLLE 22 (474)
Q Consensus 2 et~L~~A~~~g~~~~v~~Ll~ 22 (474)
|-.++.||..||.+.++.|-.
T Consensus 14 EQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 445777888888887777644
No 120
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=56.72 E-value=12 Score=35.80 Aligned_cols=180 Identities=10% Similarity=0.020 Sum_probs=82.1
Q ss_pred HHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCcc--ccccCCCCchHHHHHHhcCCH
Q 011936 7 EASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPVL--AGELDSRGSSPLHMAAQKGYV 84 (474)
Q Consensus 7 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~ 84 (474)
.+...++.+....+++.-..-......|.+|+..+......+..+..+.+++.-... .-..+..|.-.+..+......
T Consensus 48 ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~ 127 (369)
T 3k49_A 48 RELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDS 127 (369)
T ss_dssp HHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCH
Confidence 344444444444444331111122356778888887777777776666666542211 112255666666655555544
Q ss_pred HHHHHHHhc-CCC-ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhC-CCc-ccccCCCChhHHHHHHHcCCHHHHHHHHH
Q 011936 85 DIVKELLQV-NPD-MCLARDVDGRNPLHVAAMKGRIQVLVELFRAR-PFA-AYSTTIWNETVLHLCVKHNQFEALKFLVS 160 (474)
Q Consensus 85 ~iv~~LL~~-~~~-~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~-~~~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 160 (474)
+-...+++. .+. .....|..|+..+......+..+..+.+++.- +.. .-..+..|...+.-+.+.+..+--+.+++
T Consensus 128 ~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~ 207 (369)
T 3k49_A 128 NQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILN 207 (369)
T ss_dssp HHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHH
Confidence 433333332 111 11235666666555555554433323332211 000 11234455556666666655544444444
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhcC
Q 011936 161 IMNDPDFLNAKDDYGMSILHLAVADK 186 (474)
Q Consensus 161 ~~~~~~l~~~~d~~g~t~Lh~A~~~~ 186 (474)
...+.-..-..|..||-.+..+...+
T Consensus 208 ~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 208 ELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp TTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 32221111234555555554444443
No 121
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.95 E-value=30 Score=32.49 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhheee----ccCCCc
Q 011936 399 TVWIAITSMALTYRVSILVF----TPKKDE 424 (474)
Q Consensus 399 ~~~~~~~~~~~af~~~~~~~----~~~~~~ 424 (474)
+-.++++++..+|++|+|-+ +|...|
T Consensus 282 LTiit~IflP~T~IaGiyGMNf~~mPel~~ 311 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGMNFSYLPLANN 311 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTCCCSCCTTSSC
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCCCCccC
Confidence 44578888999999999865 565444
No 122
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=29.32 E-value=33 Score=31.98 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=71.2
Q ss_pred HHHHHcCCHHHHHHHHhcCccchhhhhcCCCCCCHHHHHHhcCCHHHHHHHHhcCCc-c-ccccCCCCchHHHHHHhcCC
Q 011936 6 YEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRTPV-L-AGELDSRGSSPLHMAAQKGY 83 (474)
Q Consensus 6 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~-~~~~d~~g~tpLh~A~~~g~ 83 (474)
......++.+....+++.-..-.-....|.+|+..+.-....+..+.-..+++.-.. . .-..|.+|.-.+..+.....
T Consensus 29 Q~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~ 108 (333)
T 3bwt_A 29 QKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIK 108 (333)
T ss_dssp HHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCC
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHHHHhcC
Confidence 334445555555555543111112245788888888888888877666655543211 1 01225556555555544432
Q ss_pred -HH----HHHHHHhcCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHHhC--CCcccccCCCChhHHHHHHHcCCHH
Q 011936 84 -VD----IVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQVLVELFRAR--PFAAYSTTIWNETVLHLCVKHNQFE 153 (474)
Q Consensus 84 -~~----iv~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~~~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~~~~~ 153 (474)
.+ +++.|..+ -....+|..|+..+......+..+..+.+++.- ....-..+..|...+..+.+.+..+
T Consensus 109 ~~~~~~~i~~el~~~--~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~~~~~~ 183 (333)
T 3bwt_A 109 TDEEAQIVVDSLRPY--TVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTE 183 (333)
T ss_dssp SHHHHHHHHHHHGGG--HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHHHCCHH
T ss_pred cHHHHHHHHHHHHHH--HHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCHH
Confidence 11 22222211 111235667777776666666655444444311 0011123445555666665555543
No 123
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.50 E-value=34 Score=32.53 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhheee----ccCCCc
Q 011936 399 TVWIAITSMALTYRVSILVF----TPKKDE 424 (474)
Q Consensus 399 ~~~~~~~~~~~af~~~~~~~----~~~~~~ 424 (474)
+-.+|++++..+|++|+|-+ +|.-.|
T Consensus 306 LTiit~IflP~T~IaGiyGMNf~~mPel~~ 335 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGMNFEYMPELRW 335 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCcccC
Confidence 44578889999999999965 675444
No 124
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=27.81 E-value=30 Score=32.88 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=85.1
Q ss_pred hcCCCCCCHHHHHHhcCCHHHHHHHHhcCCc--cccccCCCCchHHHHHHhcCCHHHHHHHHhc--CCCccccCCCCCCc
Q 011936 32 VANRHHETPLHVAALRGHLHFAKEILRRTPV--LAGELDSRGSSPLHMAAQKGYVDIVKELLQV--NPDMCLARDVDGRN 107 (474)
Q Consensus 32 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~~iv~~LL~~--~~~~~~~~d~~g~t 107 (474)
..|.+|.-.+..+...+..+-.+.+.+.-.. ..-..|..|+..+......+..+..+.+++. |.-.....+..|.-
T Consensus 37 ~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~r 116 (369)
T 3k49_A 37 CKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACR 116 (369)
T ss_dssp HTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHH
T ss_pred HcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHH
Confidence 3455566666777777776555555443111 1113378888888888888877766666653 21111234556666
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCc-ccccCCCChhHHHHHHHcCCHHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhc
Q 011936 108 PLHVAAMKGRIQVLVELFRAR-PFA-AYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILHLAVAD 185 (474)
Q Consensus 108 pLh~Aa~~g~~~~~~~Ll~~~-~~~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~l~~~~d~~g~t~Lh~A~~~ 185 (474)
.+..+......+-...+++.- +.. .-..|.+|...+....+.+..+-.+.+++.....-.--..+..|...+.-....
T Consensus 117 VlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~ 196 (369)
T 3k49_A 117 VIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEF 196 (369)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHh
Confidence 666666666555444444421 111 123466677666666666554433333332221111123455666666655555
Q ss_pred CChHHHHHhh
Q 011936 186 KQIETINYLL 195 (474)
Q Consensus 186 ~~~~iv~~Ll 195 (474)
+..+.-+.++
T Consensus 197 ~~~~~~~~i~ 206 (369)
T 3k49_A 197 GSSEDQESIL 206 (369)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5544434343
No 125
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.38 E-value=1.5e+02 Score=19.46 Aligned_cols=8 Identities=50% Similarity=0.696 Sum_probs=4.4
Q ss_pred hccCCCCC
Q 011936 465 IGKRRRPS 472 (474)
Q Consensus 465 ~~~~~~~~ 472 (474)
++||+++.
T Consensus 38 FFkR~~~~ 45 (54)
T 2knc_A 38 FFKRNRPP 45 (54)
T ss_dssp HTTTTCCS
T ss_pred cccCCCCC
Confidence 45666553
Done!