BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011937
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/388 (48%), Positives = 262/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/388 (48%), Positives = 262/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVGY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHHSTSDDS+ YR +DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRPVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/388 (48%), Positives = 262/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHH+TSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHNTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHH TSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHQTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHH TSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHXTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHH TSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHDTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHH TSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHETSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 188/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GH STSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 187/388 (48%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GH STSDDS+ +R++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 186/388 (47%), Positives = 261/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q+RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GH STSDDS+ +R++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/388 (48%), Positives = 260/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TY +GH STSDDS+ YR++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAIGHASTSDDSSAYRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/388 (47%), Positives = 260/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GHHSTSDDS+ +R++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAFRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/388 (47%), Positives = 260/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + YRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GH STSDDS+ +R++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/388 (47%), Positives = 260/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GH STS DS+ +R++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSADSSAFRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/388 (47%), Positives = 260/388 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 9 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 68
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 69 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLEL 128
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 129 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 188
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 189 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 248
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383
SIRVDGND AVY A + AR A++E +P L+EA+TYR+GH STSDDS+ +R++DE+ Y
Sbjct: 249 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNY 308
Query: 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443
W + PI+R R+++ QGWW E++E R ++++++A + AE+ KP LFSDVY
Sbjct: 309 WDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
Query: 444 DVPPSNLAEQEKQLKEIIQTYPQDYPTD 471
P+ L +Q++ L +QTY + YP D
Sbjct: 369 QEMPAQLRKQQESLARHLQTYGEHYPLD 396
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 209/361 (57%), Gaps = 11/361 (3%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQ----AFLFSRGHFHGN 129
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339
+NFA +AP +F+ +NN +AIST + +Q + + K A GI I+VDG D LAVY A
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 244
Query: 340 VQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPINRFRNWV 398
V+AARE AI+ + P L+E L +R G H+ S DD T+YR+ E+E ++ P+ RFR ++
Sbjct: 245 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS-KELENEWAKKDPLVRFRKFL 303
Query: 399 ERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLK 458
E +G WSE+EE + K+++ +AI+ A++T K +T+L S +++ P NL EQ + K
Sbjct: 304 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 363
Query: 459 E 459
E
Sbjct: 364 E 364
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 209/361 (57%), Gaps = 11/361 (3%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339
+NFA +AP +F+ +NN +AIST + +Q + + K A GI I+VDG D LAVY A
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 245
Query: 340 VQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPINRFRNWV 398
V+AARE AI+ + P L+E L +R G H+ S DD T+YR+ E+E ++ P+ RFR ++
Sbjct: 246 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS-KELENEWAKKDPLVRFRKFL 304
Query: 399 ERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLK 458
E +G WSE+EE + K+++ +AI+ A++T K +T+L S +++ P NL EQ + K
Sbjct: 305 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 364
Query: 459 E 459
E
Sbjct: 365 E 365
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 209/361 (57%), Gaps = 11/361 (3%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQ----AFLFSRGHFHGN 129
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+G+F+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQG 184
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339
+NFA +AP +F+ +NN +AIST + +Q + + K A GI I+VDG D LAVY A
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 244
Query: 340 VQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPINRFRNWV 398
V+AARE AI+ + P L+E L +R G H+ S DD T+YR+ E+E ++ P+ RFR ++
Sbjct: 245 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS-KELENEWAKKDPLVRFRKFL 303
Query: 399 ERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLK 458
E +G WSE+EE + K+++ +AI+ A++T K +T+L S +++ P NL EQ + K
Sbjct: 304 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 363
Query: 459 E 459
E
Sbjct: 364 E 364
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 208/361 (57%), Gaps = 11/361 (3%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+P + +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339
+NFA +AP +F+ +NN +A ST + +Q + + K A GI I+VDG D LAVY A
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 245
Query: 340 VQAAREMAISEKRPVLVEALTYRVGHHSTS-DDSTKYRTLDEIEYWKTERSPINRFRNWV 398
V+AARE AI+ + P L+E L +R G H+ S DD T+YR+ E+E ++ P+ RFR ++
Sbjct: 246 VKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS-KELENEWAKKDPLVRFRKFL 304
Query: 399 ERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLK 458
E +G WSE+EE + K+++ +AI+ A++T K +T+L S +++ P NL EQ + K
Sbjct: 305 EAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYK 364
Query: 459 E 459
E
Sbjct: 365 E 365
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 201/352 (57%), Gaps = 5/352 (1%)
Query: 110 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEE 168
R++ + GE + DF + E ++Y M+ +++D R G+ SF G E
Sbjct: 17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 169 AINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGS 227
A + A A+ D++ P YR+ G+ L G L++ Q+ A KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 228 KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME 287
K LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSEGD++A +NFAAV
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194
Query: 288 APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMA 347
AP VFI NN +AIS + Q S I K A+GI VDG D LA Y V+ A E A
Sbjct: 195 APAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERA 254
Query: 348 ISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQ 407
+ P LVE YR G HS++DD ++YR +E+ +W+ ++ PI RFR ++E +G W+E+
Sbjct: 255 RRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEE 313
Query: 408 EETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 459
E ++R I+ +L + ++ AE+ +F DV+ P +L QE LKE
Sbjct: 314 WEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKE 365
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 194/355 (54%), Gaps = 9/355 (2%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + M+ ++ DS + AQRQ + SFY+ ++GEEA
Sbjct: 56 RVLDEQGD-AQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEA 114
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L+ R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 115 IGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVRE 174
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP 289
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E DFH AL FA V AP
Sbjct: 175 AGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAP 234
Query: 290 VVFICRNNGWAIST-NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAI 348
V+ NN WAIST S +G GI S+RVDGND +AVY A + A E A
Sbjct: 235 VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERAR 294
Query: 349 SEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQE 408
P L+E +TYR G HSTSDD +KYR D+ ++ PI R + + + G WSE+E
Sbjct: 295 RGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG-DPIARLKQHLIKIGHWSEEE 353
Query: 409 ETELRSSIKKQLLQAIQVAEK------TEKPAITELFSDVYDVPPSNLAEQEKQL 457
+ + ++ A + AE+ P+ +F DVY P +L Q ++L
Sbjct: 354 HQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 408
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 189/355 (53%), Gaps = 9/355 (2%)
Query: 110 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEA 169
RVLD+ G+ +G + + ++ + + ++ DS AQRQ + SFY ++GEEA
Sbjct: 55 RVLDEQGD-AQGPWAEDIDPQILRQGXRAXLKTRIFDSRXVVAQRQKKXSFYXQSLGEEA 113
Query: 170 INIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK 229
I G A AL+ D P YR+ +L R +L + Q+ +N+ D KGRQ+PI Y ++
Sbjct: 114 IGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNERDPLKGRQLPIXYSVRE 173
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP 289
+ TIS +ATQ QAVG A + ++ A A+ GDG T+E DFH AL FA V AP
Sbjct: 174 AGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAP 233
Query: 290 VVFICRNNGWAIST-NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAI 348
V+ NN WAIST S +G GI S+RVDGND +AVY A + A E A
Sbjct: 234 VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERAR 293
Query: 349 SEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQE 408
P L+E +TYR G HSTSDD +KYR D+ ++ PI R + + + G WSE+E
Sbjct: 294 RGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG-DPIARLKQHLIKIGHWSEEE 352
Query: 409 ETELRSSIKKQLLQAIQVAEK------TEKPAITELFSDVYDVPPSNLAEQEKQL 457
+ + ++ A + AE+ P+ F DVY P +L Q ++L
Sbjct: 353 HQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASXFEDVYKEXPDHLRRQRQEL 407
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 152/322 (47%), Gaps = 5/322 (1%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T++
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225
Query: 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365
S +G I +RVDG D L V A + A S K P+L+E TYR
Sbjct: 226 ERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 366 HSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQ 425
HS SD YRT +EI+ +++ PI ++ + S +E E+ ++K++ A Q
Sbjct: 284 HSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 426 VAEKTEKPAITELFSDVYDVPP 447
A +P + EL +Y P
Sbjct: 344 FATADPEPPLEELGYHIYSSDP 365
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 151/322 (46%), Gaps = 5/322 (1%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAV 225
Query: 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365
S +G I +RVDG D L V A + A S K P+L+E TYR
Sbjct: 226 ERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 366 HSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQ 425
HS SD YRT +EI+ +++ PI ++ + S +E E+ ++K++ A Q
Sbjct: 284 HSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 426 VAEKTEKPAITELFSDVYDVPP 447
A +P + EL +Y P
Sbjct: 344 FATADPEPPLEELGYHIYSSDP 365
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 152/322 (47%), Gaps = 5/322 (1%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
+R G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T++
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225
Query: 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365
S +G I +RVDG D L V A + A S K P+L+E TYR
Sbjct: 226 ERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 366 HSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQ 425
HS SD YRT +EI+ +++ PI ++ + S +E E+ ++K++ A Q
Sbjct: 284 HSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 426 VAEKTEKPAITELFSDVYDVPP 447
A +P + EL +Y P
Sbjct: 344 FATADPEPPLEELGYHIYSSDP 365
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 151/322 (46%), Gaps = 5/322 (1%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 31 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 90
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 91 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 148
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T++
Sbjct: 149 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 208
Query: 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365
S +G I +RVDG D L V A + A S K P+L+E TYR
Sbjct: 209 ERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 266
Query: 366 HSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQ 425
H SD YRT +EI+ +++ PI ++ + S +E E+ ++K++ A Q
Sbjct: 267 HEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 326
Query: 426 VAEKTEKPAITELFSDVYDVPP 447
A +P + EL +Y P
Sbjct: 327 FATADPEPPLEELGYHIYSSDP 348
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 5/322 (1%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFIL 185
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D ++
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI 305
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAV 225
Query: 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365
S +G I +RVDG D L V A + A S K P+L+E TYR
Sbjct: 226 ERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHG 283
Query: 366 HSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQ 425
H SD YRT +EI+ +++ PI ++ + S +E E+ ++K++ A Q
Sbjct: 284 HXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQ 343
Query: 426 VAEKTEKPAITELFSDVYDVPP 447
A +P + EL +Y P
Sbjct: 344 FATADPEPPLEELGYHIYSSDP 365
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 131/282 (46%), Gaps = 4/282 (1%)
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
G+EA +G A ++ D ++ YR G RG ++++ ++ K KG+ H
Sbjct: 71 GQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHX 130
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV 285
+K N+ + + Q+P G+A + K KD + GDG ++G A N AA+
Sbjct: 131 YAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAAL 188
Query: 286 MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345
+ P +FIC NN + T++ S +G I +RVDG D L V A + A
Sbjct: 189 WKLPCIFICENNRYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREATRFAAA 246
Query: 346 MAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWS 405
S K P+L E TYR HS SD YRT +EI+ +++ PI ++ S
Sbjct: 247 YCRSGKGPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLAS 306
Query: 406 EQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 447
+E E+ ++K++ A Q A +P + EL +Y P
Sbjct: 307 VEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 348
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 234 TISSPIATQLPQAVGVAYSLKM----------EKKDACAVAYTGDGGTSEGDFHAALNFA 283
T + P+ + AVG+A + K + D A+ GDG EG H + A
Sbjct: 110 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 169
Query: 284 AVME-APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQ 341
++ ++ +NG +I ++ F +D ++ AYG IR +DG+DA ++ AV+
Sbjct: 170 GTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVE 228
Query: 342 AAREMAISEKRPVLV 356
AR A+++K +L+
Sbjct: 229 EAR--AVTDKPSLLM 241
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 234 TISSPIATQLPQAVGVAYSLKM----------EKKDACAVAYTGDGGTSEGDFHAALNFA 283
T + P+ + AVG+A + K + D A+ GDG EG H + A
Sbjct: 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 170
Query: 284 AVME-APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQ 341
++ ++ +NG +I ++ F +D ++ AYG IR +DG+DA ++ AV+
Sbjct: 171 GTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVE 229
Query: 342 AAREMAISEKRPVLV 356
AR A+++K +L+
Sbjct: 230 EAR--AVTDKPSLLM 242
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 218 GRQMPIH--YGSKKLNYITISSPIATQLPQAVGVAYSLKM----EKKDACAV------AY 265
G + P H YG + P+ + AVG A + + +DA + A
Sbjct: 120 GSKTPGHPEYG-HTAGVDATTGPLGQGIATAVGXAXAERHLAAKYNRDAYNIVDHYTYAI 178
Query: 266 TGDGGTSEGDFHAALNFAAVME-APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324
GDG EG A + AA ++ +V + +N ++ +++ F S+ + + +AYG +
Sbjct: 179 CGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAYGWQ 237
Query: 325 SIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEALT 360
IRV DGND A+ A++ A+ EKRP L+E T
Sbjct: 238 VIRVEDGNDIEAIAKAIEEAK---ADEKRPTLIEVRT 271
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYS--ISALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGAARW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYSI--SALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYS--ISALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYSI--SALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYS--ISALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 395 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYSI--SALWTAAQYNIPTI 448
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 449 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 502
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 503 --KGSLQEALSAKGPVLIEVST 522
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYSI--SALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 395 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYS--ISALWTAAQYNIPTI 448
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 449 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 502
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 503 --KGSLQEALSAKGPVLIEVST 522
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 27/142 (19%)
Query: 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV 291
Y + + LP A+GV ++ + + +A GDG + +AL AA P +
Sbjct: 396 YFCAAGGLGFALPAAIGV----QLAEPERQVIAVIGDGSANYSI--SALWTAAQYNIPTI 449
Query: 292 FICRNNG------WAISTNISEQFRSDGIVVKG-------RAYGIRSIRVDGNDALAVYT 338
F+ NNG W + E G+ V G + YG+++++ D + L
Sbjct: 450 FVIMNNGTYGALRW--FAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL---- 503
Query: 339 AVQAAREMAISEKRPVLVEALT 360
+ + + A+S K PVL+E T
Sbjct: 504 --KGSLQEALSAKGPVLIEVST 523
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
+T L A+G+A + + KD A GDG + G AALN M ++ + +N
Sbjct: 126 STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEM 185
Query: 300 AISTNIS 306
+IS N+
Sbjct: 186 SISENVG 192
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
+T + +G+A + + E K+ V GDG + G A N A + + I +N
Sbjct: 124 STSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEX 183
Query: 300 AISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM 346
+IS N+ ++ G+ Y S+R G V++ V +E+
Sbjct: 184 SISENVGALNNHLAQLLSGKLY--SSLREGGKK---VFSGVPPIKEL 225
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 234 TISSPIATQLPQAVGVAY-----SLKMEKKDACAV-----AYTGDGGTSEGDFHAALNFA 283
T + P+ L AVG+A + + + DA V + GDG EG H A + A
Sbjct: 152 TTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGXLMEGISHEACSLA 211
Query: 284 AVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDGND 332
++ ++ + +NG +I ++ F D + AYG I V+G+D
Sbjct: 212 GTLKLNKLIALYDDNGISIDGDVVNWFHDD-TPKRFEAYGWNVIPNVNGHD 261
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 296 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVL 355
N+GWA Q + DG++++ R +G + I +DG+D AV AR KR ++
Sbjct: 24 NDGWAAVEKRFNQLQVDGVLLRSR-FG-KCIGMDGSDEFAVQMFDSLAR------KRGIV 75
Query: 356 VEALT 360
+ LT
Sbjct: 76 KQVLT 80
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 210 ANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVA 264
A+ +D G G PIH + + ++P+AT L A+ + Y L EK +DA VA
Sbjct: 307 ASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVA 366
Query: 265 YTGDGGTSEGDFHAA 279
+ G GD ++A
Sbjct: 367 L--NNGFRTGDIYSA 379
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 210 ANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK 258
A+ + DG G P+H + + I++P+AT L A+ + YS +E++
Sbjct: 286 ASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEE 334
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 243 LPQAVGVAYSLKMEKKDACAV-AYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWA 300
L A G+AY+ K K + V GDG SEG A+ FA++ + +V I N
Sbjct: 127 LGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLG 186
Query: 301 ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360
S Q + D + A+G +I VDG+ + A A+ +P + A T
Sbjct: 187 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QPTAIIAKT 240
Query: 361 YR 362
++
Sbjct: 241 FK 242
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 243 LPQAVGVAYSLKMEKKDACAV-AYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWA 300
L A G+AY+ K K + V GDG SEG A+ FA++ + +V I N
Sbjct: 125 LGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLG 184
Query: 301 ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360
S Q + D + A+G +I VDG+ + A A+ +P + A T
Sbjct: 185 QSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QPTAIIAKT 238
Query: 361 YR 362
++
Sbjct: 239 FK 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,554,533
Number of Sequences: 62578
Number of extensions: 537027
Number of successful extensions: 1289
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 56
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)