Query 011937
Match_columns 474
No_of_seqs 350 out of 2475
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1182 Branched chain alpha-k 100.0 3E-115 7E-120 853.1 26.3 393 81-473 37-430 (432)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.4E-94 3.1E-99 734.6 36.7 351 107-458 2-357 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 1.1E-81 2.5E-86 648.2 37.0 319 125-446 25-344 (362)
4 TIGR03181 PDH_E1_alph_x pyruva 100.0 2.4E-80 5.2E-85 635.7 38.5 341 107-457 1-341 (341)
5 CHL00149 odpA pyruvate dehydro 100.0 2E-79 4.3E-84 628.5 38.2 320 124-445 14-341 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 3.1E-79 6.6E-84 621.4 35.0 314 129-444 1-315 (315)
7 PLN02374 pyruvate dehydrogenas 100.0 2.3E-77 5E-82 627.6 38.3 322 124-447 80-409 (433)
8 KOG0225 Pyruvate dehydrogenase 100.0 1.9E-76 4.1E-81 584.6 26.5 320 125-448 54-374 (394)
9 PF00676 E1_dh: Dehydrogenase 100.0 2.4E-74 5.3E-79 581.9 30.7 300 136-436 1-300 (300)
10 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.3E-72 2.8E-77 567.4 33.7 292 135-427 1-293 (293)
11 PRK09404 sucA 2-oxoglutarate d 100.0 3.7E-60 8E-65 531.8 37.3 340 126-472 185-565 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.8E-55 8.2E-60 489.6 36.7 344 124-472 183-566 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 6.1E-50 1.3E-54 395.3 20.4 228 145-377 1-261 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.9E-36 6.3E-41 330.9 33.1 357 105-472 464-869 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 4.5E-33 9.9E-38 303.9 22.0 223 123-367 11-249 (581)
16 COG0567 SucA 2-oxoglutarate de 100.0 1.1E-29 2.3E-34 279.7 25.9 342 123-472 168-547 (906)
17 KOG0450 2-oxoglutarate dehydro 100.0 4.1E-29 9E-34 265.2 26.2 342 125-472 244-631 (1017)
18 KOG0451 Predicted 2-oxoglutara 99.9 1.8E-26 3.9E-31 240.7 21.8 305 125-434 152-497 (913)
19 TIGR00232 tktlase_bact transke 99.9 9.8E-25 2.1E-29 241.4 28.9 164 196-370 73-251 (653)
20 PRK12754 transketolase; Review 99.9 1.2E-24 2.7E-29 240.0 28.9 163 196-369 77-254 (663)
21 cd02012 TPP_TK Thiamine pyroph 99.9 6.5E-25 1.4E-29 217.0 23.8 180 183-371 52-237 (255)
22 PTZ00089 transketolase; Provis 99.9 9.7E-25 2.1E-29 241.7 24.3 195 181-386 59-277 (661)
23 PRK12753 transketolase; Review 99.9 4.4E-24 9.5E-29 236.3 29.4 179 182-371 58-256 (663)
24 cd02007 TPP_DXS Thiamine pyrop 99.9 5.1E-25 1.1E-29 210.0 17.8 135 221-365 58-194 (195)
25 COG3959 Transketolase, N-termi 99.9 3.4E-24 7.3E-29 204.3 21.1 218 133-362 8-242 (243)
26 PRK05899 transketolase; Review 99.9 5.3E-24 1.2E-28 234.8 25.6 193 181-385 61-276 (624)
27 PLN02790 transketolase 99.9 6.9E-24 1.5E-28 234.7 22.6 182 181-373 47-250 (654)
28 PRK05444 1-deoxy-D-xylulose-5- 99.9 1.7E-23 3.7E-28 229.0 21.7 240 107-369 2-250 (580)
29 PF00456 Transketolase_N: Tran 99.9 2E-23 4.3E-28 213.7 20.8 151 217-371 90-253 (332)
30 cd02017 TPP_E1_EcPDC_like Thia 99.9 3.3E-22 7.1E-27 206.5 24.0 182 176-367 49-323 (386)
31 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 8.9E-23 1.9E-27 224.5 20.8 227 123-369 9-282 (617)
32 cd02011 TPP_PK Thiamine pyroph 99.9 4E-23 8.7E-28 200.3 15.1 167 165-348 2-174 (227)
33 TIGR00759 aceE pyruvate dehydr 99.9 7.9E-21 1.7E-25 211.1 27.1 230 129-367 71-394 (885)
34 TIGR03186 AKGDH_not_PDH alpha- 99.9 1.4E-20 3.1E-25 211.0 27.4 230 129-368 71-395 (889)
35 PRK12571 1-deoxy-D-xylulose-5- 99.9 3.8E-21 8.1E-26 212.5 22.2 242 107-370 4-292 (641)
36 COG0021 TktA Transketolase [Ca 99.9 2.9E-20 6.2E-25 199.3 24.0 159 199-368 84-255 (663)
37 PLN02582 1-deoxy-D-xylulose-5- 99.9 3.5E-20 7.6E-25 204.7 21.9 231 121-369 40-328 (677)
38 PRK13012 2-oxoacid dehydrogena 99.9 1.2E-19 2.6E-24 204.3 26.6 229 129-367 85-408 (896)
39 PLN02234 1-deoxy-D-xylulose-5- 99.8 4E-20 8.6E-25 202.9 21.3 232 122-371 74-331 (641)
40 PRK09405 aceE pyruvate dehydro 99.8 4.2E-19 9.2E-24 199.3 26.2 228 129-366 77-399 (891)
41 KOG0523 Transketolase [Carbohy 99.8 8.4E-19 1.8E-23 186.3 21.6 216 138-365 13-245 (632)
42 PRK11864 2-ketoisovalerate fer 99.8 2.2E-18 4.8E-23 173.8 18.5 233 187-427 14-296 (300)
43 PRK05261 putative phosphoketol 99.7 3.1E-17 6.7E-22 182.4 17.4 201 158-365 49-287 (785)
44 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 3.6E-17 7.8E-22 152.1 13.3 114 235-360 46-171 (172)
45 cd00568 TPP_enzymes Thiamine p 99.7 2.2E-17 4.8E-22 151.4 11.4 116 233-360 42-168 (168)
46 cd02013 TPP_Xsc_like Thiamine 99.7 6.1E-17 1.3E-21 154.3 11.8 120 236-364 52-182 (196)
47 PF13292 DXP_synthase_N: 1-deo 99.7 4E-17 8.7E-22 160.5 9.6 218 123-360 9-270 (270)
48 cd02002 TPP_BFDC Thiamine pyro 99.7 7.4E-17 1.6E-21 150.5 10.9 112 237-360 49-178 (178)
49 COG1154 Dxs Deoxyxylulose-5-ph 99.7 4.1E-16 9E-21 166.8 17.1 228 120-367 10-285 (627)
50 cd02006 TPP_Gcl Thiamine pyrop 99.7 1.8E-16 3.8E-21 151.6 11.7 121 235-363 55-196 (202)
51 cd02014 TPP_POX Thiamine pyrop 99.7 3.2E-16 6.9E-21 146.9 12.5 116 235-362 49-174 (178)
52 PRK06163 hypothetical protein; 99.7 2.2E-15 4.8E-20 144.7 15.3 131 236-383 56-190 (202)
53 cd02015 TPP_AHAS Thiamine pyro 99.7 9.7E-16 2.1E-20 144.5 12.5 115 236-362 49-175 (186)
54 cd03371 TPP_PpyrDC Thiamine py 99.6 3E-15 6.6E-20 142.0 15.6 117 236-364 47-166 (188)
55 cd02010 TPP_ALS Thiamine pyrop 99.6 1.3E-15 2.7E-20 143.1 12.6 116 235-362 46-171 (177)
56 cd03372 TPP_ComE Thiamine pyro 99.6 3E-15 6.5E-20 140.9 13.8 115 236-364 41-158 (179)
57 cd02001 TPP_ComE_PpyrDC Thiami 99.6 2.7E-15 5.9E-20 138.4 11.8 113 236-361 41-155 (157)
58 PLN02225 1-deoxy-D-xylulose-5- 99.6 5.4E-15 1.2E-19 163.2 16.2 229 117-364 81-367 (701)
59 cd02008 TPP_IOR_alpha Thiamine 99.6 8.1E-15 1.8E-19 137.5 14.5 117 235-360 49-176 (178)
60 cd02005 TPP_PDC_IPDC Thiamine 99.6 7.7E-15 1.7E-19 138.5 13.7 117 235-362 48-175 (183)
61 PRK07524 hypothetical protein; 99.6 5.6E-15 1.2E-19 160.4 12.8 118 236-365 406-533 (535)
62 TIGR03846 sulfopy_beta sulfopy 99.6 9.2E-15 2E-19 138.0 12.4 113 236-362 41-157 (181)
63 cd02003 TPP_IolD Thiamine pyro 99.6 1.1E-14 2.3E-19 139.8 13.0 117 235-363 46-186 (205)
64 PF02775 TPP_enzyme_C: Thiamin 99.6 7.7E-15 1.7E-19 133.9 10.1 114 235-358 26-153 (153)
65 cd02009 TPP_SHCHC_synthase Thi 99.6 9.1E-15 2E-19 136.9 10.6 111 237-360 51-174 (175)
66 PRK08327 acetolactate synthase 99.6 1.6E-14 3.5E-19 158.1 13.7 119 236-360 429-566 (569)
67 PRK07092 benzoylformate decarb 99.6 2.1E-14 4.6E-19 155.8 13.0 114 235-360 405-529 (530)
68 PRK08266 hypothetical protein; 99.5 5.9E-14 1.3E-18 152.5 14.2 118 236-365 401-529 (542)
69 COG0028 IlvB Thiamine pyrophos 99.5 3.9E-14 8.4E-19 154.4 12.6 118 234-363 405-533 (550)
70 TIGR01504 glyox_carbo_lig glyo 99.5 2.6E-14 5.7E-19 157.1 10.9 119 236-362 417-556 (588)
71 PRK06154 hypothetical protein; 99.5 6.7E-14 1.4E-18 153.2 13.9 118 236-362 430-556 (565)
72 PRK12474 hypothetical protein; 99.5 7.1E-14 1.5E-18 151.3 13.3 113 236-360 388-518 (518)
73 PRK06546 pyruvate dehydrogenas 99.5 8.9E-14 1.9E-18 152.6 14.0 116 236-363 407-532 (578)
74 cd03375 TPP_OGFOR Thiamine pyr 99.5 1E-13 2.2E-18 132.1 12.2 114 236-361 50-184 (193)
75 PRK06725 acetolactate synthase 99.5 6.6E-14 1.4E-18 153.4 12.1 115 236-362 421-546 (570)
76 cd03376 TPP_PFOR_porB_like Thi 99.5 5.1E-14 1.1E-18 138.2 10.1 128 233-370 58-209 (235)
77 PRK09124 pyruvate dehydrogenas 99.5 1.3E-13 2.9E-18 150.9 13.9 116 235-362 406-531 (574)
78 PRK11269 glyoxylate carboligas 99.5 6.5E-14 1.4E-18 153.9 11.1 120 235-362 417-557 (591)
79 PRK07586 hypothetical protein; 99.5 1.1E-13 2.5E-18 149.4 12.8 113 236-360 384-514 (514)
80 TIGR02418 acolac_catab acetola 99.5 1.3E-13 2.8E-18 149.9 12.5 116 236-363 407-532 (539)
81 PRK08199 thiamine pyrophosphat 99.5 1.7E-13 3.7E-18 149.6 13.5 116 235-362 413-539 (557)
82 PRK07064 hypothetical protein; 99.5 1.3E-13 2.8E-18 149.9 12.4 114 236-361 404-528 (544)
83 PRK07418 acetolactate synthase 99.5 1.2E-13 2.6E-18 152.6 11.9 116 235-362 432-560 (616)
84 PRK06112 acetolactate synthase 99.5 2.2E-13 4.8E-18 149.3 13.7 115 236-362 436-561 (578)
85 PRK05858 hypothetical protein; 99.5 1.5E-13 3.2E-18 149.7 12.0 115 236-362 406-531 (542)
86 TIGR02720 pyruv_oxi_spxB pyruv 99.5 2E-13 4.4E-18 149.6 13.1 117 236-362 407-533 (575)
87 PRK06457 pyruvate dehydrogenas 99.5 2.3E-13 5E-18 148.3 13.3 116 235-362 394-520 (549)
88 PRK06882 acetolactate synthase 99.5 3.1E-13 6.6E-18 148.0 13.6 117 235-362 419-547 (574)
89 PRK07710 acetolactate synthase 99.5 4.1E-13 8.9E-18 147.0 14.6 115 236-362 423-549 (571)
90 PRK07525 sulfoacetaldehyde ace 99.5 1.2E-13 2.5E-18 151.9 10.2 121 235-364 433-565 (588)
91 PRK07979 acetolactate synthase 99.5 3.3E-13 7.1E-18 147.9 13.5 118 236-362 420-549 (574)
92 TIGR03393 indolpyr_decarb indo 99.5 2.1E-13 4.5E-18 148.4 11.8 114 236-361 403-527 (539)
93 TIGR03457 sulphoacet_xsc sulfo 99.5 2.6E-13 5.7E-18 148.8 12.7 118 236-362 429-558 (579)
94 PRK08322 acetolactate synthase 99.5 3.3E-13 7.2E-18 146.8 13.2 115 236-362 405-529 (547)
95 PRK09107 acetolactate synthase 99.5 4.2E-13 9.2E-18 147.8 13.6 115 236-362 429-555 (595)
96 PLN02573 pyruvate decarboxylas 99.5 3.5E-13 7.6E-18 148.0 12.5 117 235-361 426-552 (578)
97 PRK08611 pyruvate oxidase; Pro 99.5 4.3E-13 9.3E-18 147.1 13.1 115 236-362 407-531 (576)
98 PRK06456 acetolactate synthase 99.5 3.8E-13 8.1E-18 147.2 12.6 116 235-362 419-546 (572)
99 PRK06048 acetolactate synthase 99.4 6.3E-13 1.4E-17 145.3 14.0 115 236-362 413-539 (561)
100 PRK06965 acetolactate synthase 99.4 5.4E-13 1.2E-17 146.6 13.4 116 236-362 436-563 (587)
101 PRK08617 acetolactate synthase 99.4 5.2E-13 1.1E-17 145.5 13.2 115 236-362 413-537 (552)
102 PRK08979 acetolactate synthase 99.4 6.1E-13 1.3E-17 145.7 13.6 116 236-362 420-547 (572)
103 PRK08155 acetolactate synthase 99.4 7E-13 1.5E-17 145.0 13.9 115 236-362 418-544 (564)
104 PRK06466 acetolactate synthase 99.4 7.3E-13 1.6E-17 145.2 13.9 117 235-362 421-549 (574)
105 PRK05778 2-oxoglutarate ferred 99.4 1.2E-12 2.5E-17 132.9 14.1 136 237-385 70-224 (301)
106 CHL00099 ilvB acetohydroxyacid 99.4 8.2E-13 1.8E-17 145.2 13.9 116 235-362 428-556 (585)
107 PRK08527 acetolactate synthase 99.4 9.5E-13 2.1E-17 143.9 14.2 115 236-362 413-539 (563)
108 TIGR03297 Ppyr-DeCO2ase phosph 99.4 1.8E-12 3.9E-17 134.6 15.3 133 235-382 219-354 (361)
109 TIGR00118 acolac_lg acetolacta 99.4 5.9E-13 1.3E-17 145.3 12.2 115 236-362 411-537 (558)
110 PRK08978 acetolactate synthase 99.4 7.8E-13 1.7E-17 144.1 12.9 115 236-362 400-526 (548)
111 PRK08273 thiamine pyrophosphat 99.4 1E-12 2.2E-17 144.7 13.9 116 236-362 414-547 (597)
112 cd02018 TPP_PFOR Thiamine pyro 99.4 3.9E-13 8.4E-18 132.1 9.5 121 235-362 62-204 (237)
113 TIGR03254 oxalate_oxc oxalyl-C 99.4 1.1E-12 2.3E-17 143.2 13.7 114 236-362 416-539 (554)
114 PLN02470 acetolactate synthase 99.4 1.3E-12 2.7E-17 143.6 13.8 115 236-362 425-558 (585)
115 PRK09259 putative oxalyl-CoA d 99.4 1.3E-12 2.7E-17 143.2 13.4 114 236-362 423-547 (569)
116 PRK09628 oorB 2-oxoglutarate-a 99.4 1.1E-12 2.3E-17 131.8 11.7 114 237-362 68-202 (277)
117 TIGR03394 indol_phenyl_DC indo 99.4 1.1E-12 2.3E-17 142.9 11.7 114 236-361 402-521 (535)
118 PRK07789 acetolactate synthase 99.4 1E-12 2.2E-17 145.2 10.7 116 236-362 446-577 (612)
119 PRK11869 2-oxoacid ferredoxin 99.4 3.2E-12 6.8E-17 128.4 11.9 116 237-362 60-194 (280)
120 PRK06276 acetolactate synthase 99.4 3.9E-12 8.5E-17 139.8 13.3 115 236-362 418-544 (586)
121 PRK07449 2-succinyl-5-enolpyru 99.4 1.3E-12 2.8E-17 142.9 8.8 112 237-361 425-549 (568)
122 PRK07282 acetolactate synthase 99.4 3.2E-12 6.9E-17 140.0 11.6 114 236-362 417-542 (566)
123 COG2609 AceE Pyruvate dehydrog 99.3 1.6E-10 3.6E-15 125.1 23.5 268 129-411 74-435 (887)
124 PRK11866 2-oxoacid ferredoxin 99.3 2E-11 4.3E-16 122.7 12.7 117 235-361 57-192 (279)
125 PRK11867 2-oxoglutarate ferred 99.3 1.9E-11 4.1E-16 123.4 12.6 116 236-361 68-202 (286)
126 TIGR02177 PorB_KorB 2-oxoacid: 99.3 2.2E-11 4.7E-16 122.8 10.4 115 237-362 53-187 (287)
127 PRK11865 pyruvate ferredoxin o 99.2 4.6E-10 1E-14 113.7 18.7 183 230-421 62-293 (299)
128 TIGR03336 IOR_alpha indolepyru 99.2 1.6E-10 3.4E-15 127.6 14.0 119 233-360 399-529 (595)
129 PLN02980 2-oxoglutarate decarb 99.1 1.9E-10 4E-15 139.5 10.3 117 233-362 755-890 (1655)
130 KOG1185 Thiamine pyrophosphate 99.1 9.6E-10 2.1E-14 115.5 11.9 118 234-362 427-561 (571)
131 COG3961 Pyruvate decarboxylase 99.0 1.2E-09 2.5E-14 115.9 10.6 163 165-362 363-536 (557)
132 PF09364 XFP_N: XFP N-terminal 98.9 4.8E-09 1E-13 107.5 7.8 116 219-344 122-248 (379)
133 KOG4166 Thiamine pyrophosphate 98.8 7.8E-09 1.7E-13 107.2 8.4 117 236-364 523-650 (675)
134 COG3960 Glyoxylate carboligase 98.8 9.6E-09 2.1E-13 103.9 8.1 129 233-369 415-564 (592)
135 COG3962 Acetolactate synthase 98.8 4.8E-08 1E-12 102.4 11.1 116 235-362 442-576 (617)
136 KOG1184 Thiamine pyrophosphate 98.6 4.2E-07 9.1E-12 96.6 11.3 118 234-361 412-539 (561)
137 COG1013 PorB Pyruvate:ferredox 98.4 3.6E-06 7.7E-11 85.6 14.6 154 234-401 67-241 (294)
138 COG3957 Phosphoketolase [Carbo 98.0 2.2E-05 4.9E-10 86.3 9.2 114 219-340 135-257 (793)
139 cd03377 TPP_PFOR_PNO Thiamine 97.6 0.0019 4.2E-08 67.3 14.9 98 260-363 152-269 (365)
140 COG4231 Indolepyruvate ferredo 97.4 0.00069 1.5E-08 74.3 9.4 118 233-361 424-558 (640)
141 COG1165 MenD 2-succinyl-6-hydr 97.2 0.0012 2.6E-08 71.6 9.4 107 243-362 428-547 (566)
142 TIGR02176 pyruv_ox_red pyruvat 96.9 0.0076 1.6E-07 71.9 12.3 98 260-363 952-1069(1165)
143 cd06586 TPP_enzyme_PYR Pyrimid 96.7 0.027 5.8E-07 50.6 12.2 105 243-358 48-152 (154)
144 cd07039 TPP_PYR_POX Pyrimidine 96.7 0.025 5.5E-07 52.6 12.3 104 245-358 53-156 (164)
145 cd07035 TPP_PYR_POX_like Pyrim 96.7 0.027 5.9E-07 51.1 11.7 106 243-358 47-153 (155)
146 cd07034 TPP_PYR_PFOR_IOR-alpha 96.1 0.038 8.2E-07 50.5 9.4 105 243-358 54-158 (160)
147 cd07038 TPP_PYR_PDC_IPDC_like 96.1 0.071 1.5E-06 49.4 11.3 107 243-358 48-160 (162)
148 PF02776 TPP_enzyme_N: Thiamin 96.1 0.035 7.7E-07 51.6 9.0 108 243-359 52-160 (172)
149 TIGR03845 sulfopyru_alph sulfo 95.5 0.26 5.6E-06 45.7 12.4 107 240-358 44-152 (157)
150 PRK09193 indolepyruvate ferred 95.4 0.077 1.7E-06 63.1 10.1 114 234-356 478-612 (1165)
151 PRK13030 2-oxoacid ferredoxin 95.3 0.09 2E-06 62.6 10.4 114 234-356 465-598 (1159)
152 cd07037 TPP_PYR_MenD Pyrimidin 94.8 0.17 3.6E-06 47.2 8.8 104 245-358 50-160 (162)
153 TIGR03254 oxalate_oxc oxalyl-C 94.2 0.37 8.1E-06 53.0 11.4 107 245-359 55-162 (554)
154 PRK07525 sulfoacetaldehyde ace 94.1 0.42 9.2E-06 53.1 11.7 105 245-359 58-162 (588)
155 PRK08611 pyruvate oxidase; Pro 94.1 0.43 9.3E-06 52.9 11.6 106 244-359 57-162 (576)
156 PRK13029 2-oxoacid ferredoxin 94.1 0.19 4.1E-06 59.8 9.1 88 235-328 493-584 (1186)
157 PRK06457 pyruvate dehydrogenas 93.6 0.62 1.4E-05 51.3 11.7 105 245-359 54-158 (549)
158 COG0028 IlvB Thiamine pyrophos 93.6 0.54 1.2E-05 52.1 11.1 105 245-359 54-159 (550)
159 TIGR03457 sulphoacet_xsc sulfo 93.5 0.58 1.3E-05 51.9 11.2 105 245-359 54-158 (579)
160 PRK07064 hypothetical protein; 93.4 0.73 1.6E-05 50.5 11.9 107 245-359 56-164 (544)
161 PRK09259 putative oxalyl-CoA d 93.3 0.71 1.5E-05 51.0 11.6 107 245-359 62-169 (569)
162 PRK06276 acetolactate synthase 93.3 0.72 1.6E-05 51.2 11.6 107 244-360 52-159 (586)
163 PRK06112 acetolactate synthase 93.2 0.7 1.5E-05 51.2 11.4 105 245-359 64-169 (578)
164 PRK07524 hypothetical protein; 93.1 0.87 1.9E-05 49.9 11.8 108 244-359 53-162 (535)
165 PRK06725 acetolactate synthase 93.1 0.68 1.5E-05 51.4 11.0 105 245-359 67-172 (570)
166 PRK07586 hypothetical protein; 93.0 0.69 1.5E-05 50.4 10.8 106 245-360 54-160 (514)
167 PLN02470 acetolactate synthase 92.9 0.73 1.6E-05 51.2 11.0 106 244-359 65-171 (585)
168 PRK08273 thiamine pyrophosphat 92.9 0.69 1.5E-05 51.6 10.8 106 245-360 57-163 (597)
169 PRK07979 acetolactate synthase 92.9 0.75 1.6E-05 50.9 11.0 106 245-360 57-163 (574)
170 PRK07789 acetolactate synthase 92.8 0.85 1.8E-05 51.0 11.4 106 245-360 84-190 (612)
171 PRK08322 acetolactate synthase 92.8 0.89 1.9E-05 49.9 11.4 107 244-360 52-159 (547)
172 PRK06456 acetolactate synthase 92.8 0.82 1.8E-05 50.5 11.1 105 245-359 58-163 (572)
173 PRK07119 2-ketoisovalerate fer 92.7 0.72 1.6E-05 48.3 10.1 113 242-368 60-177 (352)
174 PRK08155 acetolactate synthase 92.7 0.87 1.9E-05 50.3 11.2 106 244-359 65-171 (564)
175 PRK08978 acetolactate synthase 92.6 0.73 1.6E-05 50.6 10.4 106 244-359 52-158 (548)
176 KOG4166 Thiamine pyrophosphate 92.6 0.71 1.5E-05 49.3 9.6 100 245-358 144-248 (675)
177 PRK08199 thiamine pyrophosphat 92.6 0.96 2.1E-05 49.8 11.3 106 244-359 60-166 (557)
178 PRK07418 acetolactate synthase 92.6 1.1 2.3E-05 50.2 11.8 105 245-359 75-180 (616)
179 PRK08266 hypothetical protein; 92.6 1.1 2.3E-05 49.3 11.6 108 245-360 58-167 (542)
180 PRK06466 acetolactate synthase 92.4 0.92 2E-05 50.2 10.9 106 245-360 57-163 (574)
181 TIGR01504 glyox_carbo_lig glyo 92.4 1.3 2.9E-05 49.2 12.2 95 259-360 68-163 (588)
182 PRK11269 glyoxylate carboligas 92.3 1.1 2.4E-05 49.8 11.5 108 244-360 56-164 (591)
183 TIGR00118 acolac_lg acetolacta 92.0 1.1 2.4E-05 49.3 10.9 105 245-359 54-159 (558)
184 PRK08659 2-oxoglutarate ferred 92.0 1.1 2.3E-05 47.5 10.2 116 242-368 60-177 (376)
185 cd07033 TPP_PYR_DXS_TK_like Py 91.9 1.2 2.5E-05 41.0 9.3 99 243-358 52-154 (156)
186 PRK12474 hypothetical protein; 91.9 1.2 2.7E-05 48.6 11.0 106 245-360 58-164 (518)
187 PRK07710 acetolactate synthase 91.9 1.1 2.5E-05 49.5 10.8 107 244-360 67-174 (571)
188 PRK08979 acetolactate synthase 91.8 1.3 2.8E-05 49.1 11.2 106 244-359 56-162 (572)
189 PRK08366 vorA 2-ketoisovalerat 91.7 1.5 3.2E-05 46.7 11.0 112 243-367 62-173 (390)
190 TIGR02720 pyruv_oxi_spxB pyruv 91.7 1.5 3.3E-05 48.6 11.6 106 245-360 53-158 (575)
191 PRK06048 acetolactate synthase 91.6 1.3 2.8E-05 48.9 10.8 106 244-359 59-165 (561)
192 PRK06965 acetolactate synthase 91.6 1.6 3.4E-05 48.6 11.5 106 245-360 74-180 (587)
193 PRK09107 acetolactate synthase 91.4 1.3 2.7E-05 49.5 10.6 105 245-359 64-169 (595)
194 PF01855 POR_N: Pyruvate flavo 91.2 0.55 1.2E-05 46.3 6.7 112 243-368 49-161 (230)
195 TIGR02418 acolac_catab acetola 91.1 1.7 3.7E-05 47.7 11.2 106 245-360 51-157 (539)
196 PRK06882 acetolactate synthase 91.1 1.6 3.6E-05 48.2 11.0 106 245-360 57-163 (574)
197 TIGR03394 indol_phenyl_DC indo 91.0 1.4 3E-05 48.5 10.4 108 245-360 53-164 (535)
198 PRK07282 acetolactate synthase 91.0 1.5 3.2E-05 48.6 10.6 106 245-360 63-169 (566)
199 TIGR03297 Ppyr-DeCO2ase phosph 90.8 1 2.2E-05 47.4 8.6 112 238-358 34-150 (361)
200 PRK05858 hypothetical protein; 90.6 2 4.4E-05 47.2 11.1 106 244-359 56-162 (542)
201 PRK08527 acetolactate synthase 90.5 1.9 4.1E-05 47.6 10.9 105 245-359 56-161 (563)
202 PRK08617 acetolactate synthase 90.5 1.7 3.7E-05 47.8 10.5 96 257-359 66-162 (552)
203 PRK08327 acetolactate synthase 90.4 1.4 2.9E-05 48.9 9.6 107 245-359 65-179 (569)
204 CHL00099 ilvB acetohydroxyacid 89.5 2.5 5.4E-05 47.0 10.8 104 245-359 66-171 (585)
205 PRK06154 hypothetical protein; 89.1 3 6.6E-05 46.2 11.1 92 260-360 83-175 (565)
206 PRK09622 porA pyruvate flavodo 88.8 2.7 5.7E-05 44.9 10.0 110 243-365 69-180 (407)
207 PLN02573 pyruvate decarboxylas 88.7 2.7 5.8E-05 46.8 10.3 107 245-360 69-181 (578)
208 PRK09124 pyruvate dehydrogenas 88.5 3.3 7.1E-05 45.9 10.9 104 245-358 56-159 (574)
209 cd07036 TPP_PYR_E1-PDHc-beta_l 88.2 3.5 7.6E-05 38.6 9.2 61 287-357 103-164 (167)
210 PRK09627 oorA 2-oxoglutarate-a 88.1 2.5 5.5E-05 44.7 9.2 115 243-368 60-176 (375)
211 TIGR03710 OAFO_sf 2-oxoacid:ac 88.0 2.2 4.8E-05 47.4 9.1 109 243-362 250-362 (562)
212 PRK08367 porA pyruvate ferredo 87.8 4.1 8.8E-05 43.4 10.6 110 243-365 63-174 (394)
213 PRK06546 pyruvate dehydrogenas 87.8 3.6 7.8E-05 45.7 10.6 105 245-359 56-160 (578)
214 PRK07092 benzoylformate decarb 87.3 4 8.7E-05 44.7 10.5 106 245-359 63-169 (530)
215 TIGR00173 menD 2-succinyl-5-en 86.5 2.3 5E-05 45.4 7.9 105 245-359 53-164 (432)
216 PRK11892 pyruvate dehydrogenas 85.4 5.6 0.00012 43.3 10.2 98 243-357 202-309 (464)
217 TIGR00204 dxs 1-deoxy-D-xylulo 85.2 5.3 0.00011 45.0 10.2 101 244-358 366-467 (617)
218 COG0674 PorA Pyruvate:ferredox 84.2 6.3 0.00014 41.5 9.7 110 242-364 59-169 (365)
219 TIGR03336 IOR_alpha indolepyru 84.2 5.8 0.00013 44.4 10.0 106 243-364 59-166 (595)
220 TIGR00232 tktlase_bact transke 83.0 6.5 0.00014 44.6 9.8 81 270-358 430-512 (653)
221 PF02779 Transket_pyr: Transke 82.2 12 0.00025 35.1 9.7 106 243-358 61-170 (178)
222 PTZ00089 transketolase; Provis 80.5 8.6 0.00019 43.7 9.7 98 244-358 417-519 (661)
223 PLN02980 2-oxoglutarate decarb 80.0 5.9 0.00013 49.6 8.8 106 244-359 353-465 (1655)
224 PRK05444 1-deoxy-D-xylulose-5- 79.4 11 0.00024 42.1 10.0 101 244-358 335-436 (580)
225 PLN02683 pyruvate dehydrogenas 78.9 17 0.00037 38.2 10.6 98 243-357 87-194 (356)
226 cd01460 vWA_midasin VWA_Midasi 78.2 30 0.00064 35.0 11.7 84 261-345 166-257 (266)
227 PRK12571 1-deoxy-D-xylulose-5- 78.1 12 0.00026 42.4 9.8 100 244-358 375-476 (641)
228 PRK05899 transketolase; Review 77.2 15 0.00032 41.4 10.2 102 243-358 380-483 (624)
229 PLN02234 1-deoxy-D-xylulose-5- 76.3 14 0.0003 41.9 9.6 89 259-356 423-512 (641)
230 COG4032 Predicted thiamine-pyr 76.0 8.8 0.00019 35.4 6.4 108 241-358 53-161 (172)
231 TIGR03393 indolpyr_decarb indo 75.9 21 0.00046 39.2 10.9 107 243-360 52-165 (539)
232 PLN02790 transketolase 74.2 16 0.00034 41.6 9.4 74 275-358 431-509 (654)
233 PRK12753 transketolase; Review 74.1 15 0.00033 41.7 9.3 102 243-358 415-518 (663)
234 PLN02582 1-deoxy-D-xylulose-5- 73.2 22 0.00048 40.6 10.3 91 259-358 422-513 (677)
235 PRK12315 1-deoxy-D-xylulose-5- 72.9 20 0.00044 40.1 9.8 101 244-358 334-434 (581)
236 PLN02225 1-deoxy-D-xylulose-5- 72.3 24 0.00052 40.5 10.2 92 258-358 446-538 (701)
237 PTZ00182 3-methyl-2-oxobutanat 72.2 32 0.0007 36.1 10.6 97 243-356 95-201 (355)
238 COG0021 TktA Transketolase [Ca 68.2 14 0.0003 41.7 7.0 76 276-358 441-518 (663)
239 PRK12754 transketolase; Review 68.0 25 0.00053 40.2 9.2 104 243-358 415-518 (663)
240 CHL00144 odpB pyruvate dehydro 62.8 58 0.0013 33.8 10.1 61 287-357 110-171 (327)
241 smart00861 Transket_pyr Transk 61.6 49 0.0011 30.3 8.5 100 243-357 62-163 (168)
242 PRK09212 pyruvate dehydrogenas 60.3 62 0.0013 33.5 9.8 63 287-359 110-173 (327)
243 COG1107 Archaea-specific RecJ- 56.5 17 0.00036 40.6 4.9 55 274-337 402-458 (715)
244 COG3958 Transketolase, C-termi 56.5 46 0.00099 34.3 7.7 102 243-358 62-165 (312)
245 COG1240 ChlD Mg-chelatase subu 55.1 79 0.0017 32.0 9.0 98 238-342 155-258 (261)
246 PF13519 VWA_2: von Willebrand 53.6 56 0.0012 28.7 7.3 73 259-342 99-171 (172)
247 PF01380 SIS: SIS domain SIS d 50.5 49 0.0011 28.2 6.2 40 257-298 52-91 (131)
248 PF04273 DUF442: Putative phos 49.7 72 0.0016 27.8 7.0 48 310-360 45-95 (110)
249 PRK07449 2-succinyl-5-enolpyru 48.1 57 0.0012 36.0 7.7 47 244-296 61-107 (568)
250 cd01451 vWA_Magnesium_chelatas 47.8 2.1E+02 0.0046 26.2 10.4 72 260-340 99-176 (178)
251 PF02520 DUF148: Domain of unk 47.4 31 0.00067 29.9 4.4 38 433-470 64-101 (113)
252 COG2205 KdpD Osmosensitive K+ 47.3 74 0.0016 37.2 8.3 77 258-335 248-324 (890)
253 PF07295 DUF1451: Protein of u 46.2 69 0.0015 29.6 6.6 81 389-470 18-104 (146)
254 COG1303 Uncharacterized protei 45.8 97 0.0021 29.2 7.4 44 313-359 22-65 (179)
255 PRK11032 hypothetical protein; 45.6 73 0.0016 29.9 6.7 49 391-439 30-78 (160)
256 PF09851 SHOCT: Short C-termin 45.2 37 0.00081 22.8 3.5 28 389-417 3-30 (31)
257 cd00640 Trp-synth-beta_II Tryp 44.3 2.9E+02 0.0064 26.6 11.3 66 275-356 60-126 (244)
258 TIGR02176 pyruv_ox_red pyruvat 44.3 1.3E+02 0.0028 36.8 10.3 110 243-364 64-173 (1165)
259 PRK10490 sensor protein KdpD; 44.1 74 0.0016 37.5 8.2 76 258-335 250-326 (895)
260 PF08312 cwf21: cwf21 domain; 43.0 59 0.0013 24.1 4.6 32 391-423 13-44 (46)
261 COG3960 Glyoxylate carboligase 41.2 76 0.0016 33.4 6.6 49 309-359 114-163 (592)
262 cd01453 vWA_transcription_fact 40.9 2.3E+02 0.005 26.5 9.6 71 259-343 107-178 (183)
263 PRK13685 hypothetical protein; 39.7 2.9E+02 0.0064 28.3 10.9 82 260-344 194-287 (326)
264 KOG3384 Selenoprotein [General 39.6 29 0.00064 31.7 3.0 46 82-137 103-148 (154)
265 cd01561 CBS_like CBS_like: Thi 39.3 2.5E+02 0.0055 28.0 10.2 64 274-349 62-126 (291)
266 PRK13683 hypothetical protein; 37.2 33 0.00072 28.8 2.8 39 323-365 15-53 (87)
267 cd05014 SIS_Kpsf KpsF-like pro 37.0 1.4E+02 0.003 25.5 6.9 39 257-297 46-84 (128)
268 COG2515 Acd 1-aminocyclopropan 35.7 1.8E+02 0.0039 30.3 8.3 110 259-386 63-176 (323)
269 PF14098 SSPI: Small, acid-sol 34.6 47 0.001 26.6 3.1 47 413-462 16-62 (65)
270 KOG1184 Thiamine pyrophosphate 34.1 1.2E+02 0.0025 33.7 7.0 95 259-361 67-170 (561)
271 PRK00278 trpC indole-3-glycero 33.1 2.9E+02 0.0064 27.5 9.4 96 250-361 74-170 (260)
272 COG0108 RibB 3,4-dihydroxy-2-b 32.2 1.5E+02 0.0033 28.9 6.7 69 256-329 121-192 (203)
273 PRK09195 gatY tagatose-bisphos 31.8 5.7E+02 0.012 26.1 12.2 115 258-386 41-165 (284)
274 COG4231 Indolepyruvate ferredo 31.8 3.2E+02 0.0069 31.1 10.0 165 164-369 16-182 (640)
275 PRK02955 small acid-soluble sp 31.4 53 0.0011 26.5 2.9 47 413-462 18-64 (68)
276 COG0769 MurE UDP-N-acetylmuram 31.4 7.1E+02 0.015 27.3 12.7 152 192-368 299-451 (475)
277 TIGR03092 SASP_sspI small, aci 30.8 54 0.0012 26.2 2.9 47 413-462 15-61 (65)
278 TIGR01858 tag_bisphos_ald clas 30.3 4.9E+02 0.011 26.6 10.5 114 258-385 39-162 (282)
279 TIGR01415 trpB_rel pyridoxal-p 29.9 6.2E+02 0.014 27.2 11.8 74 246-334 105-179 (419)
280 PRK06381 threonine synthase; V 29.4 4.7E+02 0.01 26.5 10.4 64 275-355 73-137 (319)
281 PRK09225 threonine synthase; V 28.8 2E+02 0.0044 31.4 7.9 27 109-135 20-46 (462)
282 PF00926 DHBP_synthase: 3,4-di 28.3 88 0.0019 30.2 4.5 86 239-329 90-188 (194)
283 PF14399 Transpep_BrtH: NlpC/p 28.0 3.5E+02 0.0076 27.0 9.1 45 314-362 55-99 (317)
284 PRK13406 bchD magnesium chelat 27.9 4.9E+02 0.011 29.4 10.9 92 241-343 474-582 (584)
285 PF05014 Nuc_deoxyrib_tr: Nucl 27.1 1.1E+02 0.0025 26.0 4.7 42 256-299 60-101 (113)
286 PRK12737 gatY tagatose-bisphos 26.3 6.7E+02 0.015 25.6 10.7 115 258-386 41-165 (284)
287 PLN03013 cysteine synthase 26.2 1.9E+02 0.0042 31.3 7.1 15 316-330 215-229 (429)
288 PF06506 PrpR_N: Propionate ca 26.0 1.1E+02 0.0023 28.5 4.6 84 261-349 78-169 (176)
289 PRK07998 gatY putative fructos 25.6 6.1E+02 0.013 25.9 10.2 113 259-385 42-162 (283)
290 PRK08329 threonine synthase; V 25.4 2.5E+02 0.0055 29.1 7.7 54 282-351 122-175 (347)
291 TIGR00239 2oxo_dh_E1 2-oxoglut 24.9 4.4E+02 0.0096 31.6 10.1 106 243-358 660-772 (929)
292 TIGR00506 ribB 3,4-dihydroxy-2 24.8 2E+02 0.0043 28.0 6.2 68 257-329 123-193 (199)
293 cd06445 ATase The DNA repair p 24.7 1E+02 0.0022 25.0 3.7 18 104-121 47-64 (79)
294 COG5016 Pyruvate/oxaloacetate 24.7 7.6E+02 0.016 27.0 10.8 83 313-419 102-197 (472)
295 TIGR00589 ogt O-6-methylguanin 24.2 44 0.00095 27.6 1.4 17 104-120 49-65 (80)
296 PRK12738 kbaY tagatose-bisphos 24.0 7.9E+02 0.017 25.1 12.0 113 259-385 42-164 (286)
297 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.9 2E+02 0.0043 25.1 5.8 39 258-297 61-99 (153)
298 TIGR03186 AKGDH_not_PDH alpha- 23.6 4.7E+02 0.01 31.2 10.0 120 234-359 563-689 (889)
299 PLN02331 phosphoribosylglycina 23.3 5.2E+02 0.011 25.0 8.9 53 261-330 2-57 (207)
300 cd05710 SIS_1 A subgroup of th 23.2 1.9E+02 0.0041 24.9 5.4 40 257-298 46-85 (120)
301 TIGR00670 asp_carb_tr aspartat 23.1 3.7E+02 0.0081 27.6 8.2 192 125-329 7-208 (301)
302 PRK13010 purU formyltetrahydro 23.0 4E+02 0.0088 27.2 8.4 54 258-330 93-149 (289)
303 PF00140 Sigma70_r1_2: Sigma-7 22.9 1.2E+02 0.0027 21.0 3.3 35 389-423 2-36 (37)
304 PF10566 Glyco_hydro_97: Glyco 22.9 1.9E+02 0.004 29.5 5.9 55 273-329 72-126 (273)
305 PF06707 DUF1194: Protein of u 22.8 7.2E+02 0.016 24.3 9.8 96 241-344 95-198 (205)
306 KOG4426 Arginyl-tRNA synthetas 22.7 4.2E+02 0.0092 29.1 8.6 116 286-416 365-494 (656)
307 COG0498 ThrC Threonine synthas 22.5 3.7E+02 0.0081 29.0 8.4 69 259-345 127-195 (411)
308 TIGR03590 PseG pseudaminic aci 22.5 4.5E+02 0.0098 26.2 8.6 73 263-335 2-93 (279)
309 PRK08558 adenine phosphoribosy 22.4 4.3E+02 0.0094 26.1 8.3 108 243-358 95-209 (238)
310 cd01987 USP_OKCHK USP domain i 22.1 4.5E+02 0.0097 21.9 7.4 62 272-333 12-73 (124)
311 PF06945 DUF1289: Protein of u 22.1 1.4E+02 0.003 22.4 3.6 13 374-386 20-32 (51)
312 PRK06260 threonine synthase; V 21.7 4.1E+02 0.0088 28.1 8.5 47 274-331 124-171 (397)
313 PRK05772 translation initiatio 21.7 5.1E+02 0.011 27.5 9.0 115 234-366 174-295 (363)
314 PRK00414 gmhA phosphoheptose i 21.3 2.6E+02 0.0056 26.5 6.3 41 256-298 109-149 (192)
315 PRK07668 hypothetical protein; 21.3 2.5E+02 0.0055 28.3 6.4 38 388-426 7-44 (254)
316 PRK11761 cysM cysteine synthas 21.2 7.1E+02 0.015 25.1 9.9 45 274-330 72-117 (296)
317 PRK07328 histidinol-phosphatas 21.1 3E+02 0.0066 27.3 7.0 76 276-355 179-255 (269)
318 TIGR01139 cysK cysteine syntha 21.1 3.4E+02 0.0075 27.2 7.5 62 279-354 71-133 (298)
319 TIGR01204 bioW 6-carboxyhexano 21.0 3E+02 0.0065 27.4 6.7 74 275-357 150-232 (232)
320 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.9 2.3E+02 0.0049 24.1 5.4 39 257-297 45-83 (126)
321 cd05017 SIS_PGI_PMI_1 The memb 20.9 2E+02 0.0044 24.6 5.1 55 257-328 42-96 (119)
322 cd02003 TPP_IolD Thiamine pyro 20.8 51 0.0011 31.5 1.3 16 287-302 66-81 (205)
323 TIGR00167 cbbA ketose-bisphosp 20.7 9.1E+02 0.02 24.7 12.6 114 259-386 42-168 (288)
324 PRK13761 hypothetical protein; 20.7 2.7E+02 0.0059 27.8 6.2 10 323-332 69-78 (248)
325 TIGR00441 gmhA phosphoheptose 20.7 1.9E+02 0.0041 26.2 5.0 40 257-298 78-117 (154)
326 PF06570 DUF1129: Protein of u 20.6 1.6E+02 0.0034 28.3 4.6 38 388-426 7-44 (206)
327 PRK01792 ribB 3,4-dihydroxy-2- 20.5 3.1E+02 0.0067 27.0 6.6 68 257-329 133-203 (214)
328 PF10925 DUF2680: Protein of u 20.5 4E+02 0.0086 20.8 6.0 43 378-423 6-52 (59)
329 PF02697 DUF217: Uncharacteriz 20.4 3.2E+02 0.007 22.1 5.7 28 395-422 39-66 (71)
330 TIGR02442 Cob-chelat-sub cobal 20.4 3.9E+02 0.0085 30.3 8.5 63 258-329 563-633 (633)
331 PLN02618 tryptophan synthase, 20.2 5E+02 0.011 27.9 8.8 69 246-329 107-176 (410)
No 1
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-115 Score=853.08 Aligned_cols=393 Identities=64% Similarity=1.077 Sum_probs=386.8
Q ss_pred ccccCCCCccCcccccccCCCCCCCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 011937 81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160 (474)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f 160 (474)
..+|||+++.||++|+|+.++..+.||||||||.||.+++++++|.++.+..++||++|+++++||.++++.||||||+|
T Consensus 37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF 116 (432)
T KOG1182|consen 37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF 116 (432)
T ss_pred hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCC
Q 011937 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240 (474)
Q Consensus 161 ~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG 240 (474)
|++++|+||+.||+|+||.|+|+||+|||+.|++||||++++++|+|||||..+.++|||||+||+++++|++++++||.
T Consensus 117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla 196 (432)
T KOG1182|consen 117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA 196 (432)
T ss_pred EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhccCC-ceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937 241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 241 ~~lp~AvGaA~A~k~~~~d-~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ 319 (474)
+|||+|+|+|||+|+++.+ +++||+||||+++||++|.+||||+++++||||+|.||||+||||+++|+.+++|+.++.
T Consensus 197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~ 276 (432)
T KOG1182|consen 197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGP 276 (432)
T ss_pred hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEecc
Confidence 9999999999999987655 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 011937 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVE 399 (474)
Q Consensus 320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~ 399 (474)
+||+.+|+|||||++|||.|+++|+++|....+|+|||++|||++|||||||+++||+.+|++.|.+.++||.|||+|++
T Consensus 277 aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~ 356 (432)
T KOG1182|consen 277 AYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIE 356 (432)
T ss_pred ccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011937 400 RQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVP 473 (474)
Q Consensus 400 ~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~~~p~~~~~~~~ 473 (474)
.+|||+|+++.++++++|++|.++++.||+.++|++.+||+|||+++|.+|++|+.+|++|+++||++||...|
T Consensus 357 ~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~~ 430 (432)
T KOG1182|consen 357 SNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKDF 430 (432)
T ss_pred hcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996654
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-94 Score=734.56 Aligned_cols=351 Identities=42% Similarity=0.677 Sum_probs=338.9
Q ss_pred CeeEEeCCCCCcccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchHHHHHHHhhcCCCC-c
Q 011937 107 PCFRVLDDNGELIKGSDFQ--QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSAD-D 182 (474)
Q Consensus 107 p~~rv~~~~g~~~~~~~~~--~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~-f~~~~~GqEA~~vg~a~aL~~~-D 182 (474)
+.+||++++|+++.+.... .+++++++++|+.|+++|.||+++..+||||+|+ |||+++||||++||++++|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 6789999999998876444 7999999999999999999999999999999996 9999999999999999999966 9
Q ss_pred EEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCc-e
Q 011937 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDA-C 261 (474)
Q Consensus 183 ~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~-v 261 (474)
||+++||+||++|++|+++.++|++++|+.+|+|+||++|+|+++++.|+++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred EEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHH
Q 011937 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQ 341 (474)
Q Consensus 262 vv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~ 341 (474)
++|++|||+++||+|||+||||++|+|||||||+||+|+||+|.+.+...+.++.++.+||||+++|||||+.+||++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888877778889999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 011937 342 AAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLL 421 (474)
Q Consensus 342 ~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~ 421 (474)
+|+++||+++||+|||++|||++|||++|||+.||+++|+++|++ +|||.|+|++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 9999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHH
Q 011937 422 QAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLK 458 (474)
Q Consensus 422 ~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~ 458 (474)
+|+++|++.|+|+++++|+|||++.|+++.+|++++.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999998874
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.1e-81 Score=648.19 Aligned_cols=319 Identities=30% Similarity=0.466 Sum_probs=309.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHH
Q 011937 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203 (474)
Q Consensus 125 ~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~ 203 (474)
+.+++++++++|+.|+++|.||+++.++++||+| +|||++.||||++||++++|+++||||++||+||++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHH
Q 011937 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA 283 (474)
Q Consensus 204 ~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~A 283 (474)
+|+|++|+.+|+++|++|++|+++++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 284 AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 284 a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
+.|+||+||||+||+|+|+|+...+.....++.++ +++|+++|||||+++|+.+++.|++++|+ ++|+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999998888888888655 68999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhccccc
Q 011937 364 GHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443 (474)
Q Consensus 364 ~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy 443 (474)
+|||++|++..||+++|++.|++.+|||.+|+++|+++|+||++++++++++++++|++++++|++.|.|+++++|+|||
T Consensus 262 ~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy 341 (362)
T PLN02269 262 HGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341 (362)
T ss_pred CCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 99999998889999999999975699999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 011937 444 DVP 446 (474)
Q Consensus 444 ~~~ 446 (474)
+++
T Consensus 342 ~~~ 344 (362)
T PLN02269 342 VKG 344 (362)
T ss_pred cCC
Confidence 965
No 4
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.4e-80 Score=635.66 Aligned_cols=341 Identities=40% Similarity=0.666 Sum_probs=325.8
Q ss_pred CeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCCCCcEEec
Q 011937 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILP 186 (474)
Q Consensus 107 p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~~~D~v~~ 186 (474)
|+||||+.+|.+.+++..+.+++++++++|++|+++|.||+++.++++||+|+|+|+++||||++||++++|+++|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 68999999999877654568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEe
Q 011937 187 QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 266 (474)
Q Consensus 187 ~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~ 266 (474)
+||+||++|++|+++.++|++++|+.+| +.+ +++.|+++.+++||+++|+|+|+|+|.|+.+++++|||++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~~-----~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERG----SWD-----PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcC----CCC-----chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 9999999999999999999999998744 222 3568999999999999999999999999999999999999
Q ss_pred CCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHH
Q 011937 267 GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM 346 (474)
Q Consensus 267 GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ 346 (474)
|||++++|.++|+||+|+.++|||||||.||+|+++++...+....++++++++||+++++|||+|+.+|+++++.|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877777789999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011937 347 AISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQV 426 (474)
Q Consensus 347 ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~ 426 (474)
++++++|+|||++|||+.|||++|++..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred HHhCCCCChhhhcccccCCCCcCHHHHHHHH
Q 011937 427 AEKTEKPAITELFSDVYDVPPSNLAEQEKQL 457 (474)
Q Consensus 427 A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l 457 (474)
|+++|+|+++++|+|||+++||+|++|+++|
T Consensus 311 a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 311 ALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 9999999999999999999999999999875
No 5
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2e-79 Score=628.46 Aligned_cols=320 Identities=26% Similarity=0.430 Sum_probs=309.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHH
Q 011937 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (474)
Q Consensus 124 ~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~ 202 (474)
...+++++++++|+.|+++|.||+++.++++||+| +|||++.||||++||++.+|+++|++|++||+||++|++|++++
T Consensus 14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~ 93 (341)
T CHL00149 14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK 93 (341)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence 44689999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhcc-------CCceEEEEeCCCccccch
Q 011937 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEGD 275 (474)
Q Consensus 203 ~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~-------~d~vvv~~~GDGa~~eG~ 275 (474)
++|+|++|+.+|+++||+|++|+.+++.++++.+|+||+++|+|+|+|+|.|+++ ++++|||++|||++++|.
T Consensus 94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~ 173 (341)
T CHL00149 94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ 173 (341)
T ss_pred HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence 9999999999999999999999999889999999999999999999999999887 589999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 011937 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVL 355 (474)
Q Consensus 276 ~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvL 355 (474)
|||+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+|+++++.|++++|++++|+|
T Consensus 174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 253 (341)
T CHL00149 174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL 253 (341)
T ss_pred HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999888877889999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Q 011937 356 VEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAI 435 (474)
Q Consensus 356 Ie~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~ 435 (474)
||++|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|++++++|++.|.|++
T Consensus 254 Iev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 331 (341)
T CHL00149 254 IEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNI 331 (341)
T ss_pred EEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999975 5799999999998 5999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCC
Q 011937 436 TELFSDVYDV 445 (474)
Q Consensus 436 ~~lf~dVy~~ 445 (474)
+++|+|||++
T Consensus 332 ~~~~~~vy~~ 341 (341)
T CHL00149 332 SDLKKYLFAD 341 (341)
T ss_pred HHHHhhcccC
Confidence 9999999974
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=3.1e-79 Score=621.43 Aligned_cols=314 Identities=32% Similarity=0.551 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHH
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~e 207 (474)
+|+++++|++|+++|.||+++.+++|||+| +|+|++.||||++||++.+|+++||+|++||+||++|++|++++++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcC
Q 011937 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME 287 (474)
Q Consensus 208 l~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~ 287 (474)
++|+++|+++||+|++|+++++.|+++.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.|||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC
Q 011937 288 APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS 367 (474)
Q Consensus 288 LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs 367 (474)
+|+||||.||+|+++++...+....++++++++||+++++|||+|+++|++++++|++++|++++|+|||++|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccC
Q 011937 368 TSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYD 444 (474)
Q Consensus 368 ~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~ 444 (474)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|+++++.|++.|.|+++++|+|||+
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 99876 799999999998 5999999999999999999999999999999999999999999999999999999995
No 7
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=2.3e-77 Score=627.65 Aligned_cols=322 Identities=28% Similarity=0.431 Sum_probs=311.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHH
Q 011937 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (474)
Q Consensus 124 ~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~ 202 (474)
.+.+++++++++|++|+++|.||+++.++|+||+| +|+|++.||||++||++++|+++||||++||+|+++|++|++++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 45899999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhcc-------CCceEEEEeCCCccccch
Q 011937 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEGD 275 (474)
Q Consensus 203 ~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~-------~d~vvv~~~GDGa~~eG~ 275 (474)
++|+|++|+.+|+++|+++++|+.+++.|+++.+++||+++|+|+|+|+|.|+++ ++++|||++|||++++|.
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 9999999999999999999999999999999999999999999999999999885 489999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 011937 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVL 355 (474)
Q Consensus 276 ~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvL 355 (474)
|||+||+|+.|+|||||||+||+|+|+++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~L 319 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 319 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999888877889999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Q 011937 356 VEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAI 435 (474)
Q Consensus 356 Ie~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~ 435 (474)
||++|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|++.|.|++
T Consensus 320 Ie~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 320 VECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred EEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999865 699999999998 5999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCC
Q 011937 436 TELFSDVYDVPP 447 (474)
Q Consensus 436 ~~lf~dVy~~~~ 447 (474)
+++|+|||++++
T Consensus 398 ~~~~~~vy~~~~ 409 (433)
T PLN02374 398 SQLLENVFADPK 409 (433)
T ss_pred HHHHhccccCCc
Confidence 999999999763
No 8
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.9e-76 Score=584.56 Aligned_cols=320 Identities=31% Similarity=0.507 Sum_probs=310.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHH
Q 011937 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203 (474)
Q Consensus 125 ~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~ 203 (474)
..+++++++++|++|+++|.||..+..+|++++| +|+|.+.||||++||+-++|++.|.|+++||+||+.+.+|.++.+
T Consensus 54 ~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~ 133 (394)
T KOG0225|consen 54 VELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVRE 133 (394)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHH
Confidence 4689999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHH
Q 011937 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA 283 (474)
Q Consensus 204 ~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~A 283 (474)
+|+|++|+..|+++|++++||+..+ +|++..|++|.|+|.++|+|+|.|+++.+.+++++.||||.+||+++|++|||
T Consensus 134 v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA 211 (394)
T KOG0225|consen 134 VLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMA 211 (394)
T ss_pred HHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHH
Confidence 9999999999999999999998765 59999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 284 AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 284 a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
+.|+||+||||+||.|++.|+..+....+++.+|+ .| +|+++|||+|+++|++|.+.|++++++++||+|+|+.|||+
T Consensus 212 ~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy 289 (394)
T KOG0225|consen 212 ALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRY 289 (394)
T ss_pred HHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeee
Confidence 99999999999999999999999999999999999 56 99999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhccccc
Q 011937 364 GHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 443 (474)
Q Consensus 364 ~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy 443 (474)
+|||.||..+.||++||+++.+.++|||..++++|++.++.||+|+++|+++++++|++++++|++.|.|++++||+|||
T Consensus 290 ~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy 369 (394)
T KOG0225|consen 290 HGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVY 369 (394)
T ss_pred cccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhh
Confidence 99999998799999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 011937 444 DVPPS 448 (474)
Q Consensus 444 ~~~~~ 448 (474)
...+.
T Consensus 370 ~~~~~ 374 (394)
T KOG0225|consen 370 VKGTG 374 (394)
T ss_pred ccCCC
Confidence 97643
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=2.4e-74 Score=581.87 Aligned_cols=300 Identities=43% Similarity=0.698 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCC
Q 011937 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADD 215 (474)
Q Consensus 136 y~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~ 215 (474)
|+.|+..|..|.++..+++||+.+|+|++.||||+++|++.+|+++||||++||+|+++|++|+++.++|+|++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 78888888888888888899999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEE
Q 011937 216 GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (474)
Q Consensus 216 ~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~ 295 (474)
+.|+. +.|+.++.+++++.++++|.++|+|+|.|+|.|+++.+.+++|++|||+++||+|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 77777 78988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCC
Q 011937 296 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKY 375 (474)
Q Consensus 296 NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~Y 375 (474)
||+|+|||+..++++..+++++|++||+|+++|||+|+++|++++++|++++|+++||+|||++|||+.|||++|||+.|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChh
Q 011937 376 RTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAIT 436 (474)
Q Consensus 376 R~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~ 436 (474)
|+++|++.|++.+|||.+|+++|++.|+||++++++|+++++++|++++++|++.|.|+|+
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999887677999999999999999999999999999999999999999999999885
No 10
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.3e-72 Score=567.45 Aligned_cols=292 Identities=43% Similarity=0.731 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCC
Q 011937 135 MYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKA 213 (474)
Q Consensus 135 ly~~M~~~R~~d~~l~~~~rqGri~-f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~ 213 (474)
+|++|+++|.||+++.+++|||+|. |+|++.||||++||++.+|+++|+|+++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 499999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEE
Q 011937 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI 293 (474)
Q Consensus 214 ~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfV 293 (474)
|+++|++|++|++++..|+++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|+.+++|+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC
Q 011937 294 CRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST 373 (474)
Q Consensus 294 v~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~ 373 (474)
|+||+|+++++...+.+..++++++++||+++++|||+|+++|++++++|++++|++++|+|||++|||.+|||++|||+
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999999888777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011937 374 KYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVA 427 (474)
Q Consensus 374 ~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A 427 (474)
.||+++|++.|+ .+|||.+|+++|+++|+||++++++++++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 59999999999999999999999999999999999999875
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=3.7e-60 Score=531.77 Aligned_cols=340 Identities=15% Similarity=0.152 Sum_probs=301.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhh------cCCCCcEEec-cCcchHHHHH--
Q 011937 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA------ALSADDFILP-QYREPGVLLW-- 196 (474)
Q Consensus 126 ~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~------aL~~~D~v~~-~yR~~g~~l~-- 196 (474)
.+++++++++|+.|+++|.||+++.++|..+++. ++.|+|++++|+.. +++++|+|++ +||||+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 7899999999999999999999999999977743 67999999999988 7779999999 5999999999
Q ss_pred cCCCHHHHHHHHhcCC--CCCCCCCCCccccCCCC-----CC-----cccccCCCCCchHHHHHHHHHhhhccCC-----
Q 011937 197 RGYTLQQFANQVFANK--ADDGKGRQMPIHYGSKK-----LN-----YITISSPIATQLPQAVGVAYSLKMEKKD----- 259 (474)
Q Consensus 197 rG~~~~~~~~el~g~~--~~~~~Gr~~~~H~~~~~-----~~-----~~~~sg~lG~~lp~AvGaA~A~k~~~~d----- 259 (474)
+|++++++|+|++|+. ++.+.++.+.+|++... -+ ...++|++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999987 44334555666765432 11 1235799999999999999999999877
Q ss_pred -ceEEEEeCCCcc-ccchHHHHHHHHHHcCCC---EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHH
Q 011937 260 -ACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDAL 334 (474)
Q Consensus 260 -~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LP---vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~ 334 (474)
.++||++||||+ +||.|||+||+|+.|++| +||||+||+|+++|+..++.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 899999999998 799999999999999997 999999999999999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Q 011937 335 AVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRS 414 (474)
Q Consensus 335 av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~ 414 (474)
+|+.|++.|++++|+++||+|||++|||++|||++|+|. ||+++|++.|++.+|||.+|+++|+++|++|++++++|++
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~ 500 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVN 500 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999885 9999999999866899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhhcccccCC----------CCcCHHHHHHHHHHHHHhCCCCCCCCC
Q 011937 415 SIKKQLLQAIQVAEKTEKPAITELFSDVYDV----------PPSNLAEQEKQLKEIIQTYPQDYPTDV 472 (474)
Q Consensus 415 ~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~----------~~~~l~~q~~~l~~~l~~~p~~~~~~~ 472 (474)
+++++|++++++|++. .+.+.+..+|.. .|....+.++.+.+.+...|++|++|.
T Consensus 501 ~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~ 565 (924)
T PRK09404 501 EYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHP 565 (924)
T ss_pred HHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccH
Confidence 9999999999999876 355666667751 122234557888888999999998874
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.8e-55 Score=489.57 Aligned_cols=344 Identities=17% Similarity=0.159 Sum_probs=301.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccccCCchHHHHHHH------hhcCCCCcEEecc-CcchHHHH
Q 011937 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQR-QGRFSFYLTTIGEEAINIGS------AAALSADDFILPQ-YREPGVLL 195 (474)
Q Consensus 124 ~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~r-qGri~f~~~~~GqEA~~vg~------a~aL~~~D~v~~~-yR~~g~~l 195 (474)
.+.+++++.+++++.|+.+..||++|...|. |+|+ +..|.|++..++ ++.+..+|+|+++ |||++++|
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL 258 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVL 258 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHH
Confidence 4578999999999999999999999999986 7774 458999887654 3455689999998 99999999
Q ss_pred H--cCCCHHHHHHHHhcCCCC-CCCCCCCc-cccCC-----------CCCCcccccCCCCCchHHHHHHHHHhhhccC--
Q 011937 196 W--RGYTLQQFANQVFANKAD-DGKGRQMP-IHYGS-----------KKLNYITISSPIATQLPQAVGVAYSLKMEKK-- 258 (474)
Q Consensus 196 ~--rG~~~~~~~~el~g~~~~-~~~Gr~~~-~H~~~-----------~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~-- 258 (474)
+ +|++++++|+|+.|+..+ .+.|++.. +|++. ..+++.+++|+|+.+.|+|+|.|+|.|+++.
T Consensus 259 ~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~ 338 (929)
T TIGR00239 259 VNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDS 338 (929)
T ss_pred HHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCc
Confidence 9 999999999999998765 34577755 99984 3356789999999999999999999998865
Q ss_pred ----CceEEEEeCCCcc-ccchHHHHHHHHHHcCCCE---EEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC
Q 011937 259 ----DACAVAYTGDGGT-SEGDFHAALNFAAVMEAPV---VFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (474)
Q Consensus 259 ----d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPv---IfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG 330 (474)
+.++||++||||+ +||.|||+||+|+.|++|+ ||||+||+|+++|+..++.+...++++|++||+|+++|||
T Consensus 339 ~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG 418 (929)
T TIGR00239 339 PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNA 418 (929)
T ss_pred ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECC
Confidence 5799999999997 8999999999999999997 9999999999999988888888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHH
Q 011937 331 NDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEET 410 (474)
Q Consensus 331 ~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~ 410 (474)
+|+++|+.|++.|++++|+++||+|||++|||++|||++|+|..||+ ++++.|++.+||+.+|+++|+++|+||+++++
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~ 497 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVT 497 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999988997 78888876689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCChh--h---hcccccC--CCCcCHHHHHHHHHHHHHhCCCCCCCCC
Q 011937 411 ELRSSIKKQLLQAIQVAEKTEKPAIT--E---LFSDVYD--VPPSNLAEQEKQLKEIIQTYPQDYPTDV 472 (474)
Q Consensus 411 ~i~~~~~~~v~~a~~~A~~~~~p~~~--~---lf~dVy~--~~~~~l~~q~~~l~~~l~~~p~~~~~~~ 472 (474)
+|+++++++|+++++.+...+.|... . +..+.+. ..+....+.+..|.+.+.+.|++|.+|.
T Consensus 498 ~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~ 566 (929)
T TIGR00239 498 EMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHS 566 (929)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccH
Confidence 99999999999999999876544332 1 2222111 1344556788999999999999998764
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=6.1e-50 Score=395.34 Aligned_cols=228 Identities=19% Similarity=0.239 Sum_probs=210.1
Q ss_pred HHHHHHHHHh-cCcccccccCCchHHHHHHHhhcCCC------CcEEecc-CcchHHHHH--cCCCHHHHHHHHhcCCC-
Q 011937 145 MDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQ-YREPGVLLW--RGYTLQQFANQVFANKA- 213 (474)
Q Consensus 145 ~d~~l~~~~r-qGri~f~~~~~GqEA~~vg~a~aL~~------~D~v~~~-yR~~g~~l~--rG~~~~~~~~el~g~~~- 213 (474)
||+++...|. ++|+ ++.|+|++++++...+++ +|+|+++ |||++++|+ +|++++++|+|+.|+.+
T Consensus 1 ~e~f~~~~f~~~krf----s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRF----GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEE----EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 5788888776 6653 489999999999999987 7999998 999999999 99999999999999887
Q ss_pred --CCCCCCCCccccCCCC-----------CCcccccCCCCCchHHHHHHHHHhhhcc-----CCceEEEEeCCCcc-ccc
Q 011937 214 --DDGKGRQMPIHYGSKK-----------LNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEG 274 (474)
Q Consensus 214 --~~~~Gr~~~~H~~~~~-----------~~~~~~sg~lG~~lp~AvGaA~A~k~~~-----~d~vvv~~~GDGa~-~eG 274 (474)
+.+.|+++++|++... +++.+++|+||.++|+|+|+|+|.|+++ .+.++||++||||+ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5556889999998654 5678999999999999999999999998 47899999999996 699
Q ss_pred hHHHHHHHHHHcCCC---EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCC
Q 011937 275 DFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK 351 (474)
Q Consensus 275 ~~~EaLn~Aa~~~LP---vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~ 351 (474)
.|||+||+|..|++| +||||+||+|+++|+..++.+..+++++|++||+|+++|||+|+++|++|+++|++++|+++
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998 99999999999999999998889999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEecCCCCCCCCCCCCCCC
Q 011937 352 RPVLVEALTYRVGHHSTSDDSTKYRT 377 (474)
Q Consensus 352 gPvLIe~~TyR~~gHs~sDd~~~YR~ 377 (474)
+|+|||++|||+.|||++|+|+ |+.
T Consensus 237 gp~lIe~~tYR~~GHse~D~p~-~t~ 261 (265)
T cd02016 237 KDVVIDLVCYRRHGHNELDEPS-FTQ 261 (265)
T ss_pred CCEEEEEEEecCCCCCCcCCcc-ccC
Confidence 9999999999999999999875 443
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.9e-36 Score=330.91 Aligned_cols=357 Identities=16% Similarity=0.181 Sum_probs=290.1
Q ss_pred CCCeeEEeCCCCCc-----ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccccCCchHHHHHHHhhc-
Q 011937 105 RVPCFRVLDDNGEL-----IKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAAA- 177 (474)
Q Consensus 105 ~~p~~rv~~~~g~~-----~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~r-qGri~f~~~~~GqEA~~vg~a~a- 177 (474)
.+..-.|.|++-+. ++ ....+++.++.+.+++.+..+..||.+|..+|- |+|+| ..|-|.+..-+-+.
T Consensus 464 g~EymhI~dpeqr~W~Q~rvE-~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFs----lEG~Es~iplld~~~ 538 (1228)
T PRK12270 464 GIEYMHIQDPEQRRWLQERVE-RPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFS----LEGGESLIPLLDAVL 538 (1228)
T ss_pred eeeeeecCCHHHHHHHHHHhh-CCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeee----ecchhhHHHHHHHHH
Confidence 35666777776542 22 225688999999999999999999999999885 88854 47888776443333
Q ss_pred -----CCCCcEEecc-CcchHHHHH--cCCCHHHHHHHHhcCCCCC-CCCCC-CccccCCCC-----------CCccccc
Q 011937 178 -----LSADDFILPQ-YREPGVLLW--RGYTLQQFANQVFANKADD-GKGRQ-MPIHYGSKK-----------LNYITIS 236 (474)
Q Consensus 178 -----L~~~D~v~~~-yR~~g~~l~--rG~~~~~~~~el~g~~~~~-~~Gr~-~~~H~~~~~-----------~~~~~~s 236 (474)
-.-+.+++++ |||+.+.|+ .|++..++|.||-||.+.. ..|++ ..+|++... ..+..++
T Consensus 539 ~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNP 618 (1228)
T PRK12270 539 DQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANP 618 (1228)
T ss_pred HHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCc
Confidence 3457899995 999999998 6999999999999987643 34555 788887421 1245778
Q ss_pred CCCCCchHHHHHHHHHhhhc---c---CCceEEEEeCCCcc-ccchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecc
Q 011937 237 SPIATQLPQAVGVAYSLKME---K---KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNIS 306 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~---~---~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LP---vIfVv~NN~yaist~~~ 306 (474)
|+|...-|+.-|.+.|.+.. + -..+.|+++||+|| +||.++|.||+|..+++| +||||.||+++++|...
T Consensus 619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~ 698 (1228)
T PRK12270 619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE 698 (1228)
T ss_pred hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc
Confidence 99999999999999998753 1 24578999999997 899999999999999998 99999999999999988
Q ss_pred ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC-----CCCCHHHH
Q 011937 307 EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST-----KYRTLDEI 381 (474)
Q Consensus 307 ~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~-----~YR~~~E~ 381 (474)
...+.....++++++++|+++|||+|+++|..+++.|+++++++++|++||++|||..||+++|||+ .||..++.
T Consensus 699 ~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~ 778 (1228)
T PRK12270 699 SSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAK 778 (1228)
T ss_pred ccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhc
Confidence 7777778889999999999999999999999999999999999999999999999999999999986 36555554
Q ss_pred HHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChh---hhc-ccc--cCCCCcCHHHHHH
Q 011937 382 EYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAIT---ELF-SDV--YDVPPSNLAEQEK 455 (474)
Q Consensus 382 ~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~---~lf-~dV--y~~~~~~l~~q~~ 455 (474)
..+ -+.|++.|+.+|.+|++|.+++.++++.+++++++..++..+.+++ ..- ++. -...|..-.+.++
T Consensus 779 ~sv------rk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~ 852 (1228)
T PRK12270 779 RSV------RKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLE 852 (1228)
T ss_pred chH------HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHH
Confidence 433 4689999999999999999999999999999999987664332222 111 111 1112445677889
Q ss_pred HHHHHHHhCCCCCCCCC
Q 011937 456 QLKEIIQTYPQDYPTDV 472 (474)
Q Consensus 456 ~l~~~l~~~p~~~~~~~ 472 (474)
.+.+.....||+|.+|.
T Consensus 853 ~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 853 RIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred HHHHHhccCCCCCccCh
Confidence 99999999999999874
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.5e-33 Score=303.90 Aligned_cols=223 Identities=16% Similarity=0.191 Sum_probs=188.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCC---CCcEEe--ccCcchHHHHH
Q 011937 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALS---ADDFIL--PQYREPGVLLW 196 (474)
Q Consensus 123 ~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~---~~D~v~--~~yR~~g~~l~ 196 (474)
+..+++.++|.++-..+ |. .-+++++++ ++++++.|+ +.++++.++. |+|+|+ +.||+|++.|.
T Consensus 11 d~~~l~~~~l~~l~~~i---r~-----~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~ 80 (581)
T PRK12315 11 DLKKLSLDELEQLASEI---RT-----ALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKML 80 (581)
T ss_pred HHhhCCHHHHHHHHHHH---HH-----HHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHH
Confidence 34567766666554443 33 223345666 499999999 6677777887 899999 89999999999
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchH
Q 011937 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (474)
Q Consensus 197 rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~ 276 (474)
+|.+++.++.+++|+.+|++++++.+.++ ...|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|.+
T Consensus 81 ~G~~~~~~~~~~~g~~~G~~~~~~s~~~~--------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~ 152 (581)
T PRK12315 81 TGRKEAFLDPDHYDDVTGYTNPEESEHDF--------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLA 152 (581)
T ss_pred cCCccchhhHHHcCCCCCCCCCCCCCCCC--------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchH
Confidence 99999999999999999998887732221 2568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcceeeeccc---------cccCcCHHHHHHHcCceEEEE-eCCCHHHHHHHHHHHHHH
Q 011937 277 HAALNFAAVMEAPVVFICRNNGWAISTNISE---------QFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREM 346 (474)
Q Consensus 277 ~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~---------~~~~~~ia~~a~ayGi~~i~V-DG~D~~av~~A~~~A~~~ 346 (474)
|||||+|+.|++|+||||+||+|+|++++.. +....++..++++|||+++.| ||||+.++++++++|++
T Consensus 153 ~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~- 231 (581)
T PRK12315 153 LEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD- 231 (581)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh-
Confidence 9999999999999999999999999987742 223446778999999999999 99999999999998764
Q ss_pred HhcCCCcEEEEEEEecCCCCC
Q 011937 347 AISEKRPVLVEALTYRVGHHS 367 (474)
Q Consensus 347 ar~~~gPvLIe~~TyR~~gHs 367 (474)
.++|++|+++|||..|..
T Consensus 232 ---~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 232 ---IDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred ---CCCCEEEEEEeecCCCCC
Confidence 689999999999998854
No 16
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=1.1e-29 Score=279.71 Aligned_cols=342 Identities=15% Similarity=0.140 Sum_probs=286.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccccCCchHHHHHHHhh------cCCCCcEEecc-CcchHHH
Q 011937 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAA------ALSADDFILPQ-YREPGVL 194 (474)
Q Consensus 123 ~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~r-qGri~f~~~~~GqEA~~vg~a~------aL~~~D~v~~~-yR~~g~~ 194 (474)
..+.++.|+.+.+|+.+..+..||+++...|. |+|+ +..|-|+...++-. ..+.+++|+++ |||+.+.
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNv 243 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNV 243 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHH
Confidence 35789999999999999999999999999886 8885 45899998765443 45578999995 9999999
Q ss_pred HH--cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC----------CCcccccCCCCCchHHHHHHHHHhhhccC----
Q 011937 195 LW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK----------LNYITISSPIATQLPQAVGVAYSLKMEKK---- 258 (474)
Q Consensus 195 l~--rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~----------~~~~~~sg~lG~~lp~AvGaA~A~k~~~~---- 258 (474)
|. .|++++.+|+|+-|+..-...-+...+|+|... +.+..++|+|....|+..|.+.|.+....
T Consensus 244 L~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~ 323 (906)
T COG0567 244 LVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTER 323 (906)
T ss_pred HHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCcc
Confidence 97 799999999999997643332345778876311 23467899999999999999999886532
Q ss_pred -CceEEEEeCCCcc-ccchHHHHHHHHHHcCC---CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCH
Q 011937 259 -DACAVAYTGDGGT-SEGDFHAALNFAAVMEA---PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (474)
Q Consensus 259 -d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~L---PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~ 333 (474)
..+.|.++||.++ +||.+.|.||+....+- +.|+||.||+.+++|......+.+...+.|+.+++|+++|+|.|+
T Consensus 324 ~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDP 403 (906)
T COG0567 324 DKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDP 403 (906)
T ss_pred ceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCc
Confidence 3577899999999 79999999999988653 899999999999999977777777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHH
Q 011937 334 LAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELR 413 (474)
Q Consensus 334 ~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~ 413 (474)
+||..+++.|.+++..++++++|++.+||..||+++|+|+ +..+..++..++...+...+.+.|+++|++|+++.+.+.
T Consensus 404 EAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~ 482 (906)
T COG0567 404 EAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELV 482 (906)
T ss_pred hhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHH
Confidence 9999999999999999999999999999999999999985 566788899987778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhcccccCC---------CCcCHHHHHHHHHHHHHhCCCCCCCCC
Q 011937 414 SSIKKQLLQAIQVAEKTEKPAITELFSDVYDV---------PPSNLAEQEKQLKEIIQTYPQDYPTDV 472 (474)
Q Consensus 414 ~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~---------~~~~l~~q~~~l~~~l~~~p~~~~~~~ 472 (474)
++++..++..+....... ..+.+...|.. .+....+.+++|...+.+.|+++..|.
T Consensus 483 ~~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~ 547 (906)
T COG0567 483 NDYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHP 547 (906)
T ss_pred HHHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhH
Confidence 999999999888766554 12222333222 123346778999999999999998875
No 17
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.1e-29 Score=265.22 Aligned_cols=342 Identities=15% Similarity=0.171 Sum_probs=286.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccccCCchHHHHHHHhh------cCCCCcEEecc-CcchHHHHH
Q 011937 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAA------ALSADDFILPQ-YREPGVLLW 196 (474)
Q Consensus 125 ~~l~~e~l~~ly~~M~~~R~~d~~l~~~~r-qGri~f~~~~~GqEA~~vg~a~------aL~~~D~v~~~-yR~~g~~l~ 196 (474)
..++.|+.+-+|..+++.-.||+++...+. .+|+ ...|.|.+.-|+-. -|+.+++|+++ |||+.+.|+
T Consensus 244 ~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF----GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~ 319 (1017)
T KOG0450|consen 244 MQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF----GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLA 319 (1017)
T ss_pred cccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccc----cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHH
Confidence 468999999999999999999999999887 4553 34899988877654 45678999995 999999997
Q ss_pred c--CCCHHHHHHHHhcCCCCCCCCCC-CccccCCC----------C--CCcccccCCCCCchHHHHHHHHHhhhc-----
Q 011937 197 R--GYTLQQFANQVFANKADDGKGRQ-MPIHYGSK----------K--LNYITISSPIATQLPQAVGVAYSLKME----- 256 (474)
Q Consensus 197 r--G~~~~~~~~el~g~~~~~~~Gr~-~~~H~~~~----------~--~~~~~~sg~lG~~lp~AvGaA~A~k~~----- 256 (474)
- -.+++++|.|+-|.. ....|.+ ..+|+|.. . +.+..++|+|...=|+.+|...|.+..
T Consensus 320 NVvRKpl~qIfseF~g~~-~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~ 398 (1017)
T KOG0450|consen 320 NVVRKPLEQIFSEFSGLE-AADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEE 398 (1017)
T ss_pred HHHhhHHHHHHHhccCCC-CCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccc
Confidence 3 589999999999844 3333544 78887631 0 235788999999999999999998864
Q ss_pred cCCceEEEEeCCCcc-ccchHHHHHHHHHHcCC---CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCC
Q 011937 257 KKDACAVAYTGDGGT-SEGDFHAALNFAAVMEA---PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGND 332 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~L---PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D 332 (474)
+.+...|.++||+|| .||.++|.|.+...-+. ..|+||.||+.+++|...-..+.+...++|++.++|+++|+++|
T Consensus 399 ~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD 478 (1017)
T KOG0450|consen 399 GKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADD 478 (1017)
T ss_pred cceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCC
Confidence 355789999999999 79999999998776553 59999999999999988877888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHH
Q 011937 333 ALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETEL 412 (474)
Q Consensus 333 ~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i 412 (474)
++||..+++-|.++...+++.++|++++||.+||++.|.|. +..+-.++..++.+..+..|.+.|+.+|.+|++++++.
T Consensus 479 ~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~ 557 (1017)
T KOG0450|consen 479 PEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEE 557 (1017)
T ss_pred hHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999999999999999999999999874 67788889998777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhhhcccccCC--------------CCcCHHHHHHHHHHHHHhCCCCCCCCC
Q 011937 413 RSSIKKQLLQAIQVAEKTEKPAITELFSDVYDV--------------PPSNLAEQEKQLKEIIQTYPQDYPTDV 472 (474)
Q Consensus 413 ~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~--------------~~~~l~~q~~~l~~~l~~~p~~~~~~~ 472 (474)
.+.+...+++|++.++....-...+-++.-|.. .|....+.++++...+...||+|.+|.
T Consensus 558 ~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hr 631 (1017)
T KOG0450|consen 558 IKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHR 631 (1017)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhh
Confidence 999999999999999886433322222222221 133446778999999999999999875
No 18
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.8e-26 Score=240.66 Aligned_cols=305 Identities=19% Similarity=0.193 Sum_probs=247.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHH------HhhcCCCCcEEecc-CcchHHHHH-
Q 011937 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIG------SAAALSADDFILPQ-YREPGVLLW- 196 (474)
Q Consensus 125 ~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg------~a~aL~~~D~v~~~-yR~~g~~l~- 196 (474)
..+.+++..++-+.|+....||++|...+..-| -| ...|.|.+..= .++.-..+|+|++. |||+..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK--RY-GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK--RY-GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh--hh-ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 357889999999999999999999998875422 01 23455544211 12223468999995 999999986
Q ss_pred -cCCCHHHHHHHHhcCCCCCCC---CCCCccccCCC--------C--CCcccccCCCCCchHHHHHHHHHhhhcc-----
Q 011937 197 -RGYTLQQFANQVFANKADDGK---GRQMPIHYGSK--------K--LNYITISSPIATQLPQAVGVAYSLKMEK----- 257 (474)
Q Consensus 197 -rG~~~~~~~~el~g~~~~~~~---Gr~~~~H~~~~--------~--~~~~~~sg~lG~~lp~AvGaA~A~k~~~----- 257 (474)
..+++..+|..+.|...-+.. -+..-.|+.+. . ..+.+++|+|....|+|+|.+.+.+...
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 689999999999998764421 12233444321 1 1356789999999999999999876531
Q ss_pred ---------CCceEEEEeCCCcc-ccchHHHHHHHHHH--cCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 258 ---------KDACAVAYTGDGGT-SEGDFHAALNFAAV--MEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 258 ---------~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~--~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
...+.|.++|||++ .+|.++|++|++-. +++ ..|++|.||+.+++||.+...+.....+.|++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 12356778999999 89999999999875 455 699999999999999999888888888999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHH-HHHHHHHHcCC
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPIN-RFRNWVERQGW 403 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~-r~r~~L~~~G~ 403 (474)
+|+|+|.|+++|.+|.+-|.++.|+.++.++|++.|||..||++-|||+ |.++-.++..+ ++..++ .|.+.|++.|+
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~v~-aReSvPdlya~~L~~eg~ 466 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKEVE-ARESVPDLYAQQLAKEGV 466 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHHHH-hhhcccHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999985 88888888886 465554 47999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 011937 404 WSEQEETELRSSIKKQLLQAIQVAEKTEKPA 434 (474)
Q Consensus 404 ~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~ 434 (474)
.|++++++++++.-+.+.+.++.+.....|+
T Consensus 467 ~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 467 LTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 9999999999999999999999887765444
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.94 E-value=9.8e-25 Score=241.36 Aligned_cols=164 Identities=22% Similarity=0.338 Sum_probs=140.3
Q ss_pred HcCC--CHHHHHHHHhcCCCCCCCCCCCccccCC-CCCCcccccCCCCCchHHHHHHHHHhhhcc----------CCceE
Q 011937 196 WRGY--TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACA 262 (474)
Q Consensus 196 ~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~-~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~----------~d~vv 262 (474)
..|+ +.+++. .+. + .|+..++|+.. ..+++...+|++|+++++|+|+|+|.|+.+ .+.+|
T Consensus 73 ~~G~~~~~e~L~-~fr-~-----~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v 145 (653)
T TIGR00232 73 LTGYDLSIEDLK-QFR-Q-----LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYT 145 (653)
T ss_pred HcCCCCCHHHHH-hcc-c-----CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEE
Confidence 3785 666544 333 2 36667889875 347888999999999999999999999863 37889
Q ss_pred EEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEE-eCCCHHHHHHHH
Q 011937 263 VAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAV 340 (474)
Q Consensus 263 v~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~V-DG~D~~av~~A~ 340 (474)
+|++|||+++||.+|||+++|+.++|| +|+||+||+|+|++++..+. .+++.+++++|||++++| ||||+.+|++|+
T Consensus 146 ~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~ 224 (653)
T TIGR00232 146 YVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAI 224 (653)
T ss_pred EEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 999999999999999999999999997 89999999999999998876 588999999999999999 999999999988
Q ss_pred HHHHHHHhcCCCcEEEEEEEecCCCCCCCC
Q 011937 341 QAAREMAISEKRPVLVEALTYRVGHHSTSD 370 (474)
Q Consensus 341 ~~A~~~ar~~~gPvLIe~~TyR~~gHs~sD 370 (474)
++|++ ..++|++|+++|+|..|.+...
T Consensus 225 ~~a~~---~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 225 EEAKA---SKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred HHHHh---CCCCCEEEEEEeeecccCcccC
Confidence 87754 1248999999999999976443
No 20
>PRK12754 transketolase; Reviewed
Probab=99.94 E-value=1.2e-24 Score=239.98 Aligned_cols=163 Identities=25% Similarity=0.369 Sum_probs=141.7
Q ss_pred HcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHhhhcc----------CCceE
Q 011937 196 WRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACA 262 (474)
Q Consensus 196 ~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~k~~~----------~d~vv 262 (474)
..|+ +.+++. .+ .+ -|+..++|+... .+++...+|+||+|++.|+|+|+|.|+.+ .+.+|
T Consensus 77 ~~G~~~~~e~L~-~f-r~-----~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v 149 (663)
T PRK12754 77 LTGYDLPMEELK-NF-RQ-----LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYT 149 (663)
T ss_pred HcCCCCCHHHHH-Hh-cc-----CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEE
Confidence 3675 776644 33 32 356678888753 47899999999999999999999999875 37899
Q ss_pred EEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEE-EeCCCHHHHHHHH
Q 011937 263 VAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAV 340 (474)
Q Consensus 263 v~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~-VDG~D~~av~~A~ 340 (474)
+|++|||+++||.+|||+++|+.++|| +|+||+||+++|++++..+. .+++.+++++|||++++ |||||+++|++|+
T Consensus 150 ~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~ 228 (663)
T PRK12754 150 YAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAV 228 (663)
T ss_pred EEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHH
Confidence 999999999999999999999999997 89999999999999999886 58999999999999999 8999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 341 QAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 341 ~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
++|.+. .++|++|+++|++..|.+..
T Consensus 229 ~~a~~~---~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 229 EEARAV---TDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred HHHHhc---CCCCEEEEEEeeeccCcccc
Confidence 888753 57899999999999998753
No 21
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.94 E-value=6.5e-25 Score=217.04 Aligned_cols=180 Identities=23% Similarity=0.308 Sum_probs=148.8
Q ss_pred EEecc-CcchH---HHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhcc
Q 011937 183 FILPQ-YREPG---VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEK 257 (474)
Q Consensus 183 ~v~~~-yR~~g---~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~ 257 (474)
+|++. |...+ .+...|+-.++-+..+. . .|..++.|+.... +++...+|+||+++|.|+|+|+|.|+.+
T Consensus 52 ~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~-~-----~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~ 125 (255)
T cd02012 52 FVLSKGHASPALYAVLALAGYLPEEDLKTFR-Q-----LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLG 125 (255)
T ss_pred EEEcCCcHHHHHHHHHHHcCCCCHHHHHHhc-c-----cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhC
Confidence 45553 55444 33446753333344332 2 3556788876544 4788889999999999999999999999
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHH
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAV 336 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av 336 (474)
+++.|+|++|||++++|.++|++++|+.++|| +|+|++||+|+++++........++++++++|||+++.|||||+.++
T Consensus 126 ~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l 205 (255)
T cd02012 126 FDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEI 205 (255)
T ss_pred CCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHH
Confidence 99999999999999999999999999999995 99999999999998877677778999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCC
Q 011937 337 YTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDD 371 (474)
Q Consensus 337 ~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd 371 (474)
++|+++|.+. .++|++|+++|.+..||+...+
T Consensus 206 ~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e~ 237 (255)
T cd02012 206 LAALEEAKKS---KGKPTLIIAKTIKGKGVPFMEN 237 (255)
T ss_pred HHHHHHHHHc---CCCCEEEEEEeecccccCccCC
Confidence 9999998863 2789999999999999986543
No 22
>PTZ00089 transketolase; Provisional
Probab=99.93 E-value=9.7e-25 Score=241.68 Aligned_cols=195 Identities=23% Similarity=0.279 Sum_probs=157.3
Q ss_pred CcE-Eec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHH
Q 011937 181 DDF-ILP-QYRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (474)
Q Consensus 181 ~D~-v~~-~yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A 252 (474)
.|. |++ .|.. ..++...|+ +.++ +..+.. .|...+.|+... .+++...+|++|++++.|+|+|+|
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~-l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a 131 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMED-LKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIA 131 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHH-HHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHH
Confidence 466 555 3666 444556784 5544 344332 244457787543 367888899999999999999999
Q ss_pred hhhccC----------CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHc
Q 011937 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 253 ~k~~~~----------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ay 321 (474)
.|+.+. +..|+|++|||+++||.+|||+|+|+.++|| +|+||+||+++|++++..+. ..++.+++++|
T Consensus 132 ~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 210 (661)
T PTZ00089 132 EKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAY 210 (661)
T ss_pred HHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhc
Confidence 998753 7899999999999999999999999999995 89999999999999988654 57899999999
Q ss_pred CceEEEE-eCC-CHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC---CCCCHHHHHHHHh
Q 011937 322 GIRSIRV-DGN-DALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST---KYRTLDEIEYWKT 386 (474)
Q Consensus 322 Gi~~i~V-DG~-D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~---~YR~~~E~~~w~~ 386 (474)
||+++.| ||| |+.++++|+++|++. .++|++|+++|+|..||...+... .+.+++|++.+++
T Consensus 211 G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~~ 277 (661)
T PTZ00089 211 GWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVKE 277 (661)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHHH
Confidence 9999999 999 999999999998863 268999999999999986554322 3667888888764
No 23
>PRK12753 transketolase; Reviewed
Probab=99.93 E-value=4.4e-24 Score=236.33 Aligned_cols=179 Identities=22% Similarity=0.275 Sum_probs=147.6
Q ss_pred cE-Eec-cCcc---hHHHHHcC--CCHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHh
Q 011937 182 DF-ILP-QYRE---PGVLLWRG--YTLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSL 253 (474)
Q Consensus 182 D~-v~~-~yR~---~g~~l~rG--~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~ 253 (474)
|. |++ .|.. ..++...| ++.+++ ..+. + .|+..++|+... .+++...+|++|++++.|+|+|+|.
T Consensus 58 Drfvls~GH~~~~lYa~l~~~G~~~~~e~L-~~fr-~-----~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~ 130 (663)
T PRK12753 58 DRFILSNGHASMLLYSLLHLTGYDLPIEEL-KNFR-Q-----LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAE 130 (663)
T ss_pred CcEEEecccHHHHHHHHHHHhCCCCCHHHH-HHhc-c-----CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHH
Confidence 44 555 3555 23344567 455554 3333 2 355678887653 4788899999999999999999999
Q ss_pred hhccC----------CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 254 KMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 254 k~~~~----------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+++|++++.... ..++.+++++||
T Consensus 131 k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~G 209 (663)
T PRK12753 131 RTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYH 209 (663)
T ss_pred HHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcC
Confidence 98752 6899999999999999999999999999996 99999999999999998765 578999999999
Q ss_pred ceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCC
Q 011937 323 IRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDD 371 (474)
Q Consensus 323 i~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd 371 (474)
|+++. |||||+.+|++|+++|.+. .++|++|+++|++..|++...+
T Consensus 210 w~~~~~vDGhD~~~i~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~~e~ 256 (663)
T PRK12753 210 WHVIHEIDGHDPQAIKEAILEAQSV---KDKPSLIICRTIIGFGSPNKAG 256 (663)
T ss_pred CeEEceeCCCCHHHHHHHHHHHHHC---CCCeEEEEEEEeecCCCCcccC
Confidence 99995 9999999999999998762 5789999999999999986543
No 24
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.93 E-value=5.1e-25 Score=210.00 Aligned_cols=135 Identities=23% Similarity=0.266 Sum_probs=120.8
Q ss_pred CccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCc
Q 011937 221 MPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299 (474)
Q Consensus 221 ~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~y 299 (474)
++.|+.... +++...+|++|+++|+|+|+|+|.|+++.+++|+|++|||+++||++||+|++|+.+++|+|+||+||+|
T Consensus 58 ~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~ 137 (195)
T cd02007 58 LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM 137 (195)
T ss_pred CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc
Confidence 777765433 4667789999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ceeeeccccccCcCHHHHHHHcCceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 300 AISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 300 aist~~~~~~~~~~ia~~a~ayGi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
++++++. ++.++++++||.++. |||||++++.+|+++|++ .++|++|+++|++..|
T Consensus 138 ~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 138 SISPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred ccCCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9988765 467888899999996 999999999999988764 5799999999998765
No 25
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3.4e-24 Score=204.30 Aligned_cols=218 Identities=19% Similarity=0.225 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccCCch-HHHHHHHhhcC--CC-------CcEEecc--CcchH---HHHHc
Q 011937 133 VKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGE-EAINIGSAAAL--SA-------DDFILPQ--YREPG---VLLWR 197 (474)
Q Consensus 133 ~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~Gq-EA~~vg~a~aL--~~-------~D~v~~~--yR~~g---~~l~r 197 (474)
.++-+....+|.-.-+|...+.+|.. .++.+. |-+++-....| +| .|+++-+ |=..+ .+..+
T Consensus 8 ~~L~~~A~~iRr~~v~m~~~~~~GH~---G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 8 DELERIAREIRRNIVRMLANAGSGHV---GGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCc---CccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 34444555556655555555556643 333332 33334344433 23 4555543 43333 23348
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCC-CCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchH
Q 011937 198 GYTLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (474)
Q Consensus 198 G~~~~~~~~el~g~~~~~~~Gr~~~~H~~~-~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~ 276 (474)
|+-+++-+..+ ++ -|+-+++|+.. +.+++..++|+||++|++|+|+|++.|+++.+..|+++.|||.++||.+
T Consensus 85 G~~p~eeL~~~-~~-----~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~ 158 (243)
T COG3959 85 GYFPEEELETF-RR-----IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQV 158 (243)
T ss_pred CCCCHHHHHHh-cc-----CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccH
Confidence 97666666644 43 47779999876 4468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 011937 277 HAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVL 355 (474)
Q Consensus 277 ~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvL 355 (474)
|||+.+|+.++| ++|.||+-|+.+++..+.+..+..++.++.++|||++++|||||+.++++|+..+... .++|.+
T Consensus 159 WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP~~ 235 (243)
T COG3959 159 WEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPTV 235 (243)
T ss_pred HHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCCeE
Confidence 999999999999 8999999999999999999999999999999999999999999999999999887652 349999
Q ss_pred EEEEEec
Q 011937 356 VEALTYR 362 (474)
Q Consensus 356 Ie~~TyR 362 (474)
|-+.|.+
T Consensus 236 IIa~Tvk 242 (243)
T COG3959 236 IIAKTVK 242 (243)
T ss_pred EEEeccc
Confidence 9999865
No 26
>PRK05899 transketolase; Reviewed
Probab=99.93 E-value=5.3e-24 Score=234.80 Aligned_cols=193 Identities=24% Similarity=0.303 Sum_probs=153.3
Q ss_pred CcEE-ec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHH
Q 011937 181 DDFI-LP-QYRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (474)
Q Consensus 181 ~D~v-~~-~yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A 252 (474)
.|.+ ++ .|-. ..++...|+ +.+++. .+. . .|..++.|+... .+++...+|++|+++|+|+|+|+|
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~-~~~-~-----~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala 133 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLK-NFR-Q-----LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALA 133 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHH-Hhc-C-----CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHH
Confidence 3655 44 3544 334556786 544433 332 2 233457776643 356777899999999999999999
Q ss_pred hhhccC----------CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHc
Q 011937 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 253 ~k~~~~----------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ay 321 (474)
.++.+. ++.|+|++|||++++|.++|+|++|+.++|| +|+|++||+|+++++.... ...++++++++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~ 212 (624)
T PRK05899 134 EKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAY 212 (624)
T ss_pred HHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccC
Confidence 998776 8899999999999999999999999999996 9999999999999877643 357899999999
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCC----HHHHHHHH
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRT----LDEIEYWK 385 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~----~~E~~~w~ 385 (474)
||++++|||||+.++..|+++|++ .++|++|++.|+|..||+..++...|+. +++++.+.
T Consensus 213 G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~ 276 (624)
T PRK05899 213 GWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAK 276 (624)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHH
Confidence 999999999999999999998875 3689999999999999997776656653 45555543
No 27
>PLN02790 transketolase
Probab=99.92 E-value=6.9e-24 Score=234.69 Aligned_cols=182 Identities=20% Similarity=0.263 Sum_probs=148.0
Q ss_pred CcEEec--cCcc---hHHHHHcCC---CHHHHHHHHhcCCCCCCCCCCCccccCC-CCCCcccccCCCCCchHHHHHHHH
Q 011937 181 DDFILP--QYRE---PGVLLWRGY---TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAY 251 (474)
Q Consensus 181 ~D~v~~--~yR~---~g~~l~rG~---~~~~~~~el~g~~~~~~~Gr~~~~H~~~-~~~~~~~~sg~lG~~lp~AvGaA~ 251 (474)
.|.++- .|-. ..++...|+ +.+++ ..+. + .|+..++|+.. ..+++...+|++|++++.|+|+|+
T Consensus 47 rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l-~~~r-~-----~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 47 RDRFVLSAGHGCMLQYALLHLAGYDSVQMEDL-KQFR-Q-----WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCCHHHH-HHhc-c-----CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 465554 3655 344556786 55554 3433 2 35556788764 347889999999999999999999
Q ss_pred Hhhh-----ccC-----CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHH
Q 011937 252 SLKM-----EKK-----DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 252 A~k~-----~~~-----d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~a 320 (474)
|.|+ +++ +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+|+|++++..+. ..++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 342 6899999999999999999999999999996 99999999999999988654 5688999999
Q ss_pred cCceEEEEeC--CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC
Q 011937 321 YGIRSIRVDG--NDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST 373 (474)
Q Consensus 321 yGi~~i~VDG--~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~ 373 (474)
|||+++.||| ||++++++|+++|++. .++|+||+++|++..|.+...++.
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~~ 250 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANSY 250 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCCC
Confidence 9999999988 8999999999988753 579999999999999977544443
No 28
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=1.7e-23 Score=229.03 Aligned_cols=240 Identities=20% Similarity=0.242 Sum_probs=173.2
Q ss_pred CeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEE-
Q 011937 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFI- 184 (474)
Q Consensus 107 p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v- 184 (474)
|+|.+|+ ++-++.+..+++.+++.++ ..-+|...++... . ..|.++--+++. |.+ +.+-..++ +.|.+
T Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~l~~~-a~~iR~~~~~~~~--~-~~gH~g~~ls~~--~i~-~~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLD---TINSPADLKKLSEEELPQL-ADEIREFLIDVVS--K-TGGHLGSNLGVV--ELT-VALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhh---ccCCHHHHhcCCHHHHHHH-HHHHHHHHHHHHH--h-cCCCcCCCccHH--HHH-HHHHHhcCCCCccEE
Confidence 4455554 3334445567887776665 3345556665552 2 466665322222 332 23333443 34544
Q ss_pred ec-cCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhc-cCCce
Q 011937 185 LP-QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME-KKDAC 261 (474)
Q Consensus 185 ~~-~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~-~~d~v 261 (474)
++ .|....++...|. .++ +..+ .+ .|+ +++|+.... +++...+|++|+++|+|+|+|+|.|++ ++++.
T Consensus 72 ls~GH~~y~~~~~~g~-~~~-l~~~-~~-----~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR-RDR-FDTL-RQ-----KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc-HHH-hcCc-cc-----CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 44 3555555666776 232 2222 22 233 667876543 678889999999999999999999998 58899
Q ss_pred EEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc---ccCcCHHHHHHHcCceEE-EEeCCCHHHHH
Q 011937 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ---FRSDGIVVKGRAYGIRSI-RVDGNDALAVY 337 (474)
Q Consensus 262 vv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~---~~~~~ia~~a~ayGi~~i-~VDG~D~~av~ 337 (474)
|+|++|||+++||++||+|++|+.+++|+|+|++||+|++++++... ....++.+++++|||+++ .|||||+.+++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999887543 233567789999999999 58999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 338 TAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 338 ~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
+|+++|++ .++|++|++.|.|..|.+..
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCCcCCChh
Confidence 99987764 57999999999999987644
No 29
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.91 E-value=2e-23 Score=213.74 Aligned_cols=151 Identities=28% Similarity=0.363 Sum_probs=125.1
Q ss_pred CCCCCccccC-CCCCCcccccCCCCCchHHHHHHHHHhhhcc----------CCceEEEEeCCCccccchHHHHHHHHHH
Q 011937 217 KGRQMPIHYG-SKKLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAV 285 (474)
Q Consensus 217 ~Gr~~~~H~~-~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~----------~d~vvv~~~GDGa~~eG~~~EaLn~Aa~ 285 (474)
.|+..++|+. ...+++..++|+||++++.|+|+|+|.|+.+ -+..|+|++|||+++||.+|||+.+|+.
T Consensus 90 ~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~ 169 (332)
T PF00456_consen 90 LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGH 169 (332)
T ss_dssp TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHH
Confidence 4667888987 3557889999999999999999999998743 3578999999999999999999999999
Q ss_pred cCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEE-eCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 286 MEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 286 ~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~V-DG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
++| ++|+|+++|+.++++++.... ..++.++.++|||.+++| ||||+.++++|+++|.. ..++|++|.+.|.+.
T Consensus 170 ~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 170 YKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKG 245 (332)
T ss_dssp TT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TT
T ss_pred hCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEe
Confidence 999 799999999999999987654 467899999999999999 99999999999999875 247999999999999
Q ss_pred CCCCCCCC
Q 011937 364 GHHSTSDD 371 (474)
Q Consensus 364 ~gHs~sDd 371 (474)
.|-+...+
T Consensus 246 ~G~~~~e~ 253 (332)
T PF00456_consen 246 KGVPFMEG 253 (332)
T ss_dssp TTSTTTTT
T ss_pred cCchhhcc
Confidence 99865543
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.90 E-value=3.3e-22 Score=206.46 Aligned_cols=182 Identities=18% Similarity=0.108 Sum_probs=147.3
Q ss_pred hcCCC------CcEEec-cCcc---hHHHHHcCC-CHHHHHHHHhcCCCCCCCCC--CCccccCCCC-C-CcccccCCCC
Q 011937 176 AALSA------DDFILP-QYRE---PGVLLWRGY-TLQQFANQVFANKADDGKGR--QMPIHYGSKK-L-NYITISSPIA 240 (474)
Q Consensus 176 ~aL~~------~D~v~~-~yR~---~g~~l~rG~-~~~~~~~el~g~~~~~~~Gr--~~~~H~~~~~-~-~~~~~sg~lG 240 (474)
..|+. .|.|++ -|-. ..++...|+ +.++ +..+.. .|+ ..+.|+.... + ++..++|+||
T Consensus 49 ~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~ed-L~~fr~------~gs~p~l~g~p~~~~~~~gve~sTGSLG 121 (386)
T cd02017 49 HFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQ-LDNFRQ------EVGGGGLSSYPHPWLMPDFWEFPTVSMG 121 (386)
T ss_pred HhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHH-HHhhcc------CCCCCCCCCCCCCCCCCCCeeeCCchHH
Confidence 45765 688776 2443 223445784 5554 455442 233 4666654322 3 4888999999
Q ss_pred CchHHHHHHHHHhhh-------ccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-ccC
Q 011937 241 TQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRS 311 (474)
Q Consensus 241 ~~lp~AvGaA~A~k~-------~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~-~~~ 311 (474)
.++++|+|+|+|.|+ .+.+..|+|++|||+++||.+|||+++|+.++| ++|+|+++|+++++.++... ...
T Consensus 122 qGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~ 201 (386)
T cd02017 122 LGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKII 201 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCc
Confidence 999999999999997 556789999999999999999999999999999 89999999999999998875 356
Q ss_pred cCHHHHHHHcCceEEEEe--------------------------------------------------------------
Q 011937 312 DGIVVKGRAYGIRSIRVD-------------------------------------------------------------- 329 (474)
Q Consensus 312 ~~ia~~a~ayGi~~i~VD-------------------------------------------------------------- 329 (474)
.++.+++++|||.++.||
T Consensus 202 e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~ 281 (386)
T cd02017 202 QELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDED 281 (386)
T ss_pred hhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHh
Confidence 789999999999999998
Q ss_pred -------CCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC
Q 011937 330 -------GNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS 367 (474)
Q Consensus 330 -------G~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs 367 (474)
|||+.+|++|+.+|.+. .++|++|.+.|....|-+
T Consensus 282 ~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 282 LWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred hhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 99999999999988752 468999999999999876
No 31
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.90 E-value=8.9e-23 Score=224.53 Aligned_cols=227 Identities=18% Similarity=0.234 Sum_probs=167.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEec--cCcchHHHHHcCC
Q 011937 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWRGY 199 (474)
Q Consensus 123 ~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~--~yR~~g~~l~rG~ 199 (474)
+..+++.+++.++-.. +|.+.++.. . ...|.++ ++.|-==+.+++-..++ +.|.++- .|....+++..|+
T Consensus 9 dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~g---~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~ 81 (617)
T TIGR00204 9 ELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHLA---SGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR 81 (617)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCcC---cchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc
Confidence 4456777777666444 455566553 2 2455554 34444333444555565 5566655 4777777778897
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcc-cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHH
Q 011937 200 TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI-TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHA 278 (474)
Q Consensus 200 ~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~-~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~E 278 (474)
. +-|..+.- .|+ +++|+...+.++. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||++++|.+||
T Consensus 82 -~-~~l~~~r~------~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~E 152 (617)
T TIGR00204 82 -R-EKFSTLRQ------KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFE 152 (617)
T ss_pred -H-HHhcchhh------cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHH
Confidence 2 33444332 243 7778765455544 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcCCcceeeecccccc------------------------C---cC-HHHH-------------
Q 011937 279 ALNFAAVMEAPVVFICRNNGWAISTNISEQFR------------------------S---DG-IVVK------------- 317 (474)
Q Consensus 279 aLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~------------------------~---~~-ia~~------------- 317 (474)
|+|+|+.++||+|+||+||++++++++..... . .+ ++++
T Consensus 153 a~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 232 (617)
T TIGR00204 153 ALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGT 232 (617)
T ss_pred HHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccc
Confidence 99999999999999999999999988753311 0 01 4444
Q ss_pred -HHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 318 -GRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 318 -a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
++++||.++ .|||||+.++.++++.+++ .++|++|+++|.|..|-+..
T Consensus 233 ~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 233 FFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCchh
Confidence 889999999 8999999999999987664 57899999999999885443
No 32
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.90 E-value=4e-23 Score=200.26 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=143.9
Q ss_pred CchHHHHHHHhhcCCC-CcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCch
Q 011937 165 IGEEAINIGSAAALSA-DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243 (474)
Q Consensus 165 ~GqEA~~vg~a~aL~~-~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~l 243 (474)
.||++.++.++..|.. .|.+|+.||.... | ++++|.++. . .|. +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 5999999999899987 5999999997751 2 256777762 1 233 99999887789999999999999
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchH---HHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-ccCcCHHHHH
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRSDGIVVKG 318 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~---~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~-~~~~~ia~~a 318 (474)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ .|+.|++||+|+|++++... .+..++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 888888888888 69999999999999999865 5567899999
Q ss_pred HHcCceEEEEeCCCHHHHHHHHHHHHHHHh
Q 011937 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAI 348 (474)
Q Consensus 319 ~ayGi~~i~VDG~D~~av~~A~~~A~~~ar 348 (474)
++|||+++.|||||+++|++++++|+++||
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877554
No 33
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.88 E-value=7.9e-21 Score=211.12 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchHHHHHHHhhcCCC------CcEEecc-CcchHH---H
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQ-YREPGV---L 194 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~r----qGri~f~~~~~GqEA~~vg~a~aL~~------~D~v~~~-yR~~g~---~ 194 (474)
+..+.+..+..++-..++........ .|.++-+.++. +...++....|+. .|.|+++ |-..+. +
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlSKGHasp~lYA~L 148 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFFQGHAAPGIYARA 148 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEECCcHHHHHHHHH
Confidence 44555666666666676665333211 34554333333 4444555556664 6888884 333332 2
Q ss_pred HHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CC-cccccCCCCCchHHHHHHHHHhhh-------ccCCceEEEE
Q 011937 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAY 265 (474)
Q Consensus 195 l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~-~~~~sg~lG~~lp~AvGaA~A~k~-------~~~d~vvv~~ 265 (474)
...|+-.++-+..+. +.. .|.+++.|+.... ++ +..++|+||.+++.|+|+|++.|+ ++.+..|+|+
T Consensus 149 ~l~G~ls~e~L~~FR-q~~---~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvl 224 (885)
T TIGR00759 149 FLEGRLTEEQLDNFR-QEV---QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAF 224 (885)
T ss_pred HHcCCCCHHHHHHhc-CCC---CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEE
Confidence 236853344455543 221 1556777765432 33 778899999999999999999996 5678899999
Q ss_pred eCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccc-CcCHHHHHHHcCceEEEE---------------
Q 011937 266 TGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV--------------- 328 (474)
Q Consensus 266 ~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~-~~~ia~~a~ayGi~~i~V--------------- 328 (474)
+|||+++||.+|||+.+|+.++| ++|+||++|...+++++..... ..++.++++++||.+++|
T Consensus 225 lGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~ 304 (885)
T TIGR00759 225 LGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTS 304 (885)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCc
Confidence 99999999999999999999999 8999999999999999887544 568999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHHhcCCCcE
Q 011937 329 ------------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPV 354 (474)
Q Consensus 329 ------------------------------------------------------DG~D~~av~~A~~~A~~~ar~~~gPv 354 (474)
+|||+.+|++|++.|.+. .++|+
T Consensus 305 g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPT 381 (885)
T TIGR00759 305 GVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPT 381 (885)
T ss_pred cHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 599999999999988863 45899
Q ss_pred EEEEEEecCCCCC
Q 011937 355 LVEALTYRVGHHS 367 (474)
Q Consensus 355 LIe~~TyR~~gHs 367 (474)
+|.++|.+..|.+
T Consensus 382 vIlA~TvKG~G~~ 394 (885)
T TIGR00759 382 VILAKTIKGYGMG 394 (885)
T ss_pred EEEEeeeecCCCC
Confidence 9999999999876
No 34
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.87 E-value=1.4e-20 Score=211.03 Aligned_cols=230 Identities=18% Similarity=0.185 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchHHHHHHHhhcCCC------CcEEecc-CcchHHH---
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQ-YREPGVL--- 194 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~r----qGri~f~~~~~GqEA~~vg~a~aL~~------~D~v~~~-yR~~g~~--- 194 (474)
+.++.+-....++...++........ .|.++-++++. +...+.....|+. +|+|+++ |-..+.+
T Consensus 71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l 148 (889)
T TIGR03186 71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARA 148 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHH
Confidence 33455555666676777665333211 25554443333 4445555556764 6898885 4444332
Q ss_pred HHcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-CC-CcccccCCCCCchHHHHHHHHHhhhc-------cCCceEEE
Q 011937 195 LWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KL-NYITISSPIATQLPQAVGVAYSLKME-------KKDACAVA 264 (474)
Q Consensus 195 l~rG~-~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~-~~~~~sg~lG~~lp~AvGaA~A~k~~-------~~d~vvv~ 264 (474)
...|+ +.++ +..+. +.. .|.+++.|+... .+ .+..++|+||.+++.|+|+|++.|+. ..+..|+|
T Consensus 149 ~l~G~l~~e~-L~~fR-q~~---~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~ 223 (889)
T TIGR03186 149 FLEGFLSDAQ-LAHYR-QEI---AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWG 223 (889)
T ss_pred HHcCCCCHHH-HHHhc-CCC---CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEE
Confidence 23684 5555 44443 221 134455543321 23 47788999999999999999998843 23688999
Q ss_pred EeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccc-CcCHHHHHHHcCceEEEE--------------
Q 011937 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV-------------- 328 (474)
Q Consensus 265 ~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~-~~~ia~~a~ayGi~~i~V-------------- 328 (474)
++|||+++||.+|||+.+|+.++| ++|+|+++|..++++++..... ..++.++++++||.+++|
T Consensus 224 llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~ 303 (889)
T TIGR03186 224 FFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDA 303 (889)
T ss_pred EEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhcccc
Confidence 999999999999999999999999 8999999999999999886433 578999999999999999
Q ss_pred -------------------------------------------------------eCCCHHHHHHHHHHHHHHHhcCCCc
Q 011937 329 -------------------------------------------------------DGNDALAVYTAVQAAREMAISEKRP 353 (474)
Q Consensus 329 -------------------------------------------------------DG~D~~av~~A~~~A~~~ar~~~gP 353 (474)
+|||+.+|++|+++|++. .++|
T Consensus 304 ~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~P 380 (889)
T TIGR03186 304 TGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRP 380 (889)
T ss_pred chHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCC
Confidence 699999999999999863 4689
Q ss_pred EEEEEEEecCCCCCC
Q 011937 354 VLVEALTYRVGHHST 368 (474)
Q Consensus 354 vLIe~~TyR~~gHs~ 368 (474)
++|.++|...+|-+.
T Consensus 381 TvIla~TvkG~G~~~ 395 (889)
T TIGR03186 381 TVILAKTMKGFGMGA 395 (889)
T ss_pred EEEEEEeeecCCCCc
Confidence 999999999888644
No 35
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.87 E-value=3.8e-21 Score=212.46 Aligned_cols=242 Identities=19% Similarity=0.226 Sum_probs=168.0
Q ss_pred CeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEe
Q 011937 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (474)
Q Consensus 107 p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~ 185 (474)
|.|.+|+ ++-.+.+..+++.+++.++-.. +|.+.+|..... .|.++ ++.|-=-+.+++...++ |.|.++
T Consensus 4 ~~~~~l~---~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~~~~---~GH~g---~~ls~vel~~aL~~~~~~prDr~i 73 (641)
T PRK12571 4 PKTPLLD---RIKGPADLRALSDAELEQLADE-LRAEVISAVSET---GGHLG---SSLGVVELTVALHAVFNTPKDKLV 73 (641)
T ss_pred CCCChhh---hcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHh---CCCcC---CCchHHHHHHHHHHhcCCCCCcEE
Confidence 3344555 3334445567888777666443 555666555322 46654 34443333344444444 456555
Q ss_pred c--cCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceE
Q 011937 186 P--QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (474)
Q Consensus 186 ~--~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vv 262 (474)
- .|-...+++..|. .+-|..+.- .|+ ++.|+...+ .+-....++-++++++|+|+|+|.|+.++++.|
T Consensus 74 ~s~GH~~Y~~~~l~g~--~~~l~~~r~------~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v 144 (641)
T PRK12571 74 WDVGHQCYPHKILTGR--RDRFRTLRQ------KGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDV 144 (641)
T ss_pred EECchHHHHHHHHhCC--HHHHhhhhh------CCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeE
Confidence 4 4666677777786 333444432 232 556654332 121123444577799999999999999999999
Q ss_pred EEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc-------ccccCcCH---------------------
Q 011937 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-------EQFRSDGI--------------------- 314 (474)
Q Consensus 263 v~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~-------~~~~~~~i--------------------- 314 (474)
+|++|||++++|.+||++++|+.+++|+|+|++||+|++++++. +......+
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDG 224 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999998874 21111111
Q ss_pred --------------HHHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCC
Q 011937 315 --------------VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSD 370 (474)
Q Consensus 315 --------------a~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sD 370 (474)
..++++|||.++ .|||||+.++.+|+++|.+. .++|++|.++|.+..|.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 225 ARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred HHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchhh
Confidence 378999999999 79999999999999888752 378999999999999876443
No 36
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.9e-20 Score=199.34 Aligned_cols=159 Identities=24% Similarity=0.328 Sum_probs=136.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHhhhcc-----C-----CceEEEEeC
Q 011937 199 YTLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEK-----K-----DACAVAYTG 267 (474)
Q Consensus 199 ~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~k~~~-----~-----d~vvv~~~G 267 (474)
++++++.+ ++- -|+.-|.|+.-. ..++..++||||++++.|+|+|+|.|... + |..++|++|
T Consensus 84 ls~edLk~-FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~G 156 (663)
T COG0021 84 LSLEDLKN-FRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVG 156 (663)
T ss_pred CCHHHHHh-hcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEec
Confidence 46666543 321 356678888633 46889999999999999999999998642 1 458999999
Q ss_pred CCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEE-EEeCCCHHHHHHHHHHHHH
Q 011937 268 DGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAARE 345 (474)
Q Consensus 268 DGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~ 345 (474)
||+++||..+||..+|+.++| .+|++.++|.++|++.+...+ .+|+.+|+++|||.++ .+||||++++.+|+++|+.
T Consensus 157 DGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~ 235 (663)
T COG0021 157 DGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA 235 (663)
T ss_pred CchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999 799999999999999988877 5789999999999999 6799999999999999987
Q ss_pred HHhcCCCcEEEEEEEecCCCCCC
Q 011937 346 MAISEKRPVLVEALTYRVGHHST 368 (474)
Q Consensus 346 ~ar~~~gPvLIe~~TyR~~gHs~ 368 (474)
. .++|+||+|+|.-..|-..
T Consensus 236 ~---~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 236 S---TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred c---CCCCeEEEEEeeeecCCCC
Confidence 3 6799999999999887555
No 37
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.85 E-value=3.5e-20 Score=204.72 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=162.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEec--cCcchHHHHHc
Q 011937 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWR 197 (474)
Q Consensus 121 ~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~--~yR~~g~~l~r 197 (474)
+.+...++.+++.++-.. +|-+.++... . ..|.++ ++.|-=-+.+++-..++ |.|.++- .|-..++.+..
T Consensus 40 p~dlk~l~~~~l~~la~~-iR~~ii~~~~--~-~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADE-LRSDVIFNVS--K-TGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHHH--h-cCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 334557888887766544 3444554432 1 245554 34444333344444454 6787776 47777777777
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchH
Q 011937 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (474)
Q Consensus 198 G~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~ 276 (474)
|. . +-|..+.. .|+ ++.|+...+ ++....+|++|++++.|+|+|+|.|+++.+..|+|++|||++++|++
T Consensus 113 gr-~-~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR-R-DKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc-H-HHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 86 2 22333321 233 777875433 56778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCc-ce--------eeecccc--------ccC--------------------cCHH----
Q 011937 277 HAALNFAAVMEAPVVFICRNNGW-AI--------STNISEQ--------FRS--------------------DGIV---- 315 (474)
Q Consensus 277 ~EaLn~Aa~~~LPvIfVv~NN~y-ai--------st~~~~~--------~~~--------------------~~ia---- 315 (474)
|||||+|+.+++|+|+||+||+. +| +...... .+. ..+.
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVD 263 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999999999996 33 1111100 000 0111
Q ss_pred ------------HHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 316 ------------VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 316 ------------~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
.+++++||.++ .|||||+.++.+++++|.+. ..++|++|.++|-+..|....
T Consensus 264 ~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 264 EYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 23789999977 89999999999999988763 116899999999999887655
No 38
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.85 E-value=1.2e-19 Score=204.27 Aligned_cols=229 Identities=18% Similarity=0.198 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccccCCchHHHHHHHhhcCC------CCcEEecc-CcchHHH---
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALS------ADDFILPQ-YREPGVL--- 194 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~rq----Gri~f~~~~~GqEA~~vg~a~aL~------~~D~v~~~-yR~~g~~--- 194 (474)
+..+.+-.+..++-..++......... |.++.++++. +...++....|+ ..|.|+.+ |-..+.+
T Consensus 85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~ 162 (896)
T PRK13012 85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYFQPHSAPGIYARA 162 (896)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEECcchHHHHHHHH
Confidence 344555556666667776654332222 4554443333 444555555676 57988885 4333322
Q ss_pred HHcC-CCHHHHHHHHhcCCCCCCCCCCCccccCCCC-C-CcccccCCCCCchHHHHHHHHHhhh-------ccCCceEEE
Q 011937 195 LWRG-YTLQQFANQVFANKADDGKGRQMPIHYGSKK-L-NYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVA 264 (474)
Q Consensus 195 l~rG-~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~-~~~~~sg~lG~~lp~AvGaA~A~k~-------~~~d~vvv~ 264 (474)
...| ++.++ +..+. +... |.+++.|+.... + .+..++|+||.+++.|+|+|++.|+ +..++.|+|
T Consensus 163 ~l~G~l~~e~-L~~fR-~~~~---~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~ 237 (896)
T PRK13012 163 FLEGRLSEEQ-LDHFR-QEIG---GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWG 237 (896)
T ss_pred HHcCCCCHHH-HHHhc-CCCC---CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEE
Confidence 2368 45554 44443 3211 556777766433 3 3678899999999999999999993 556789999
Q ss_pred EeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccc-CcCHHHHHHHcCceEEEE--------------
Q 011937 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV-------------- 328 (474)
Q Consensus 265 ~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~-~~~ia~~a~ayGi~~i~V-------------- 328 (474)
++|||+++||.+|||+.+|+.++| ++||||++|...+++++..... ..++.++++++||.+++|
T Consensus 238 ~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~ 317 (896)
T PRK13012 238 FFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDT 317 (896)
T ss_pred EEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCC
Confidence 999999999999999999999999 8999999999999999887544 468999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHHhcCCCc
Q 011937 329 ------------D-------------------------------------------GNDALAVYTAVQAAREMAISEKRP 353 (474)
Q Consensus 329 ------------D-------------------------------------------G~D~~av~~A~~~A~~~ar~~~gP 353 (474)
| |||+.+|++|++.|.+. .++|
T Consensus 318 ~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~P 394 (896)
T PRK13012 318 TGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQP 394 (896)
T ss_pred ccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCC
Confidence 8 99999999999988863 4689
Q ss_pred EEEEEEEecCCCCC
Q 011937 354 VLVEALTYRVGHHS 367 (474)
Q Consensus 354 vLIe~~TyR~~gHs 367 (474)
++|-++|.+..|-+
T Consensus 395 tvIla~TvkG~G~~ 408 (896)
T PRK13012 395 TVILAKTKKGYGMG 408 (896)
T ss_pred EEEEEEeeecCCCC
Confidence 99999999998865
No 39
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.85 E-value=4e-20 Score=202.85 Aligned_cols=232 Identities=13% Similarity=0.146 Sum_probs=165.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEec--cCcchHHHHHcC
Q 011937 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWRG 198 (474)
Q Consensus 122 ~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~--~yR~~g~~l~rG 198 (474)
.+..+++.+++.++-.. +|-+.++.. .. ..|.++ +++|-=-+.+++-..++ |.|.++- .|-..++.+..|
T Consensus 74 ~~~k~l~~~~L~~la~e-iR~~ii~~~--~~-~~GHlg---ssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltg 146 (641)
T PLN02234 74 MHMKNLSIKELKVLSDE-LRSDVIFNV--SK-TGGHLG---SNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTG 146 (641)
T ss_pred HHHhhCCHHHHHHHHHH-HHHHHHHHH--hh-cCCCcc---ccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHh
Confidence 33456777877766554 333444432 21 255554 34554334445544554 6677665 366666776666
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHH
Q 011937 199 YTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFH 277 (474)
Q Consensus 199 ~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~ 277 (474)
.. +-|..+. . .|+ +++|+...+ ++....+|++|++|++|+|+|+|.++++.+..|+|++|||++++|.+|
T Consensus 147 r~--~~l~t~r-~-----~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~w 217 (641)
T PLN02234 147 RR--GKMKTIR-Q-----TNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAY 217 (641)
T ss_pred hh--hhhcccc-c-----CCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHH
Confidence 52 1133222 1 233 677765433 577888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcc------eeeeccccccC---------------cCHHHHHHHcCceEE-EEeCCCHHH
Q 011937 278 AALNFAAVMEAPVVFICRNNGWA------ISTNISEQFRS---------------DGIVVKGRAYGIRSI-RVDGNDALA 335 (474)
Q Consensus 278 EaLn~Aa~~~LPvIfVv~NN~ya------ist~~~~~~~~---------------~~ia~~a~ayGi~~i-~VDG~D~~a 335 (474)
||+|.|+..+-++|+|+++|+.. .+.++...... ..+..++++|||.++ .|||||+.+
T Consensus 218 EAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~ 297 (641)
T PLN02234 218 EAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDD 297 (641)
T ss_pred HHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHH
Confidence 99999997777999999999984 33333211111 256789999999999 999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCC
Q 011937 336 VYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDD 371 (474)
Q Consensus 336 v~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd 371 (474)
+.+|++++.+. ..++|++|.++|-+..|-+....
T Consensus 298 l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 298 LVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 99999887642 22589999999999999876654
No 40
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.84 E-value=4.2e-19 Score=199.30 Aligned_cols=228 Identities=20% Similarity=0.212 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccccCCchHHHHHHHhhcCCC------CcEEecc-CcchHH---H
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALSA------DDFILPQ-YREPGV---L 194 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~rq----Gri~f~~~~~GqEA~~vg~a~aL~~------~D~v~~~-yR~~g~---~ 194 (474)
+..+.+.....++...++......... |.++.++++. +...++....|+. +|+|+.+ |=..+. +
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~ 154 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSA--TLYEVGFNHFFRAPNEPHGGDLVFFQGHASPGIYARA 154 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHH--HHHHHHHHhhCCCCCCCCCCCEEEECchHHHHHHHHH
Confidence 555667777788888877665543222 4444433333 4445566666764 6999874 333222 2
Q ss_pred HHcC-CCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CC-cccccCCCCCchHHHHHHHHHhhh-------ccCCceEEE
Q 011937 195 LWRG-YTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAVA 264 (474)
Q Consensus 195 l~rG-~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~-~~~~sg~lG~~lp~AvGaA~A~k~-------~~~d~vvv~ 264 (474)
...| ++.++ +..+. +. ..|.++++|+.... +. +.+.+++||.+++.|+|+|++.|+ ++.++.|+|
T Consensus 155 ~l~G~l~~e~-L~~fR-~~---~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~ 229 (891)
T PRK09405 155 FLEGRLTEEQ-LDNFR-QE---VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWA 229 (891)
T ss_pred HHcCCCCHHH-HHHhc-CC---CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEE
Confidence 2367 45554 44443 32 23667888776533 33 567889999999999999999993 556889999
Q ss_pred EeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccc-CcCHHHHHHHcCceEEEE--------------
Q 011937 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV-------------- 328 (474)
Q Consensus 265 ~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~-~~~ia~~a~ayGi~~i~V-------------- 328 (474)
++|||+++||.+|||+.+|+.++| ++||||++|...+++++..... ..++.++++++||.+++|
T Consensus 230 ~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~ 309 (891)
T PRK09405 230 FLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDT 309 (891)
T ss_pred EEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCC
Confidence 999999999999999999999999 8999999999999999886433 578999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHHhcCCCc
Q 011937 329 ------------D-------------------------------------------GNDALAVYTAVQAAREMAISEKRP 353 (474)
Q Consensus 329 ------------D-------------------------------------------G~D~~av~~A~~~A~~~ar~~~gP 353 (474)
| |||+.+|++|++.|.+. .++|
T Consensus 310 ~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~P 386 (891)
T PRK09405 310 SGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQP 386 (891)
T ss_pred ccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCC
Confidence 4 99999999999998863 4789
Q ss_pred EEEEEEEecCCCC
Q 011937 354 VLVEALTYRVGHH 366 (474)
Q Consensus 354 vLIe~~TyR~~gH 366 (474)
++|.++|.+.+|.
T Consensus 387 tvIia~TvkG~G~ 399 (891)
T PRK09405 387 TVILAKTIKGYGM 399 (891)
T ss_pred EEEEEeceecCCC
Confidence 9999999999886
No 41
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=8.4e-19 Score=186.31 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC--C-------CcEEec--cCcc---hHHHHHcCCCHHH
Q 011937 138 HMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFILP--QYRE---PGVLLWRGYTLQQ 203 (474)
Q Consensus 138 ~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~--~-------~D~v~~--~yR~---~g~~l~rG~~~~~ 203 (474)
.|-.+|..+-.+...-..|..++.++.. |...+-.-..++ + .|-++. -|-+ ..+....|+.-.+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcHH
Confidence 4667788877777766777765544433 334443333333 2 244433 2444 2333346755444
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccC-CceEEEEeCCCccccchHHHHHHH
Q 011937 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALNF 282 (474)
Q Consensus 204 ~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~-d~vvv~~~GDGa~~eG~~~EaLn~ 282 (474)
-|.+++- -|+..+.|+.....++...+|++|++|+.|+|+|++.|+.+. +..|+|++|||+++||..|||+++
T Consensus 91 dl~~~Rq------~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQ------IGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHh------hCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 4555543 256678888766667778899999999999999999999887 889999999999999999999999
Q ss_pred HHHcCC-CEEEEEEcCCcceeeeccccccCcCHHH-HHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 283 AAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVV-KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 283 Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~-~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
|+.|+| ++|+|.+||+.+++++++..+.. ++.+ +.++|||.++.|||+|++++.+|+.+|+. ..++|++|-+.|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~~-dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFDE-DVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCcccccc-cHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 79999999999999998887654 5555 99999999999999999999999999984 357899999999
Q ss_pred ecCCC
Q 011937 361 YRVGH 365 (474)
Q Consensus 361 yR~~g 365 (474)
+...|
T Consensus 241 ~~g~G 245 (632)
T KOG0523|consen 241 FIGRG 245 (632)
T ss_pred eeecC
Confidence 99876
No 42
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.80 E-value=2.2e-18 Score=173.78 Aligned_cols=233 Identities=17% Similarity=0.161 Sum_probs=167.1
Q ss_pred cCcchHHHHHcCCCHH-HHHHHHhcCCC------CCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCC
Q 011937 187 QYREPGVLLWRGYTLQ-QFANQVFANKA------DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (474)
Q Consensus 187 ~yR~~g~~l~rG~~~~-~~~~el~g~~~------~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d 259 (474)
-||||+.....|.++. .++.+.+|+.+ ||+.+.++.+|+.. .++....+++|.++++|.|+++|.+..+.+
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5789999999998887 88889988776 77777767667664 366777899999999999999999887665
Q ss_pred ce-EEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc-----------------ccccCcCHHHHHHHc
Q 011937 260 AC-AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-----------------EQFRSDGIVVKGRAY 321 (474)
Q Consensus 260 ~v-vv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~-----------------~~~~~~~ia~~a~ay 321 (474)
.+ |++++|||++.++.+ |+|+.|+.+++||+|||.||++.+.|-.. ......++...+.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 44 555999999988886 99999999999999999999987654221 112235788999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC--------------CCCC-HHHH----
Q 011937 322 GIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST--------------KYRT-LDEI---- 381 (474)
Q Consensus 322 Gi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~--------------~YR~-~~E~---- 381 (474)
|++++ +++-.|+.++.+++++|.+ .+||.+|++.+--..++-..++.+ .||= +.++
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~ 246 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENGKFKLNS 246 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECCEEEEcc
Confidence 99876 7788899999999999997 589999999876554432221111 1210 0000
Q ss_pred --HHHHhcCCHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHH
Q 011937 382 --EYWKTERSPINRFRNWVERQG---WWSEQEETELRSSIKKQLLQAIQVA 427 (474)
Q Consensus 382 --~~w~~~~DPi~r~r~~L~~~G---~~te~e~~~i~~~~~~~v~~a~~~A 427 (474)
..|.+.+. ...+++||..+| -+.+++++++++++.+..+.-.+.+
T Consensus 247 ~~~~~~~~~~-~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~ 296 (300)
T PRK11864 247 PSKTLLDKKK-RKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLA 296 (300)
T ss_pred CCcccccccc-CCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00100000 123566666655 4678888888887777666544433
No 43
>PRK05261 putative phosphoketolase; Provisional
Probab=99.74 E-value=3.1e-17 Score=182.43 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=153.0
Q ss_pred ccccccCCchHHHHHHHhhcCCCC--cEEeccCcchHHHH------HcC--------CCHHHH-HHHHhcCCCCCCCCCC
Q 011937 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPGVLL------WRG--------YTLQQF-ANQVFANKADDGKGRQ 220 (474)
Q Consensus 158 i~f~~~~~GqEA~~vg~a~aL~~~--D~v~~~yR~~g~~l------~rG--------~~~~~~-~~el~g~~~~~~~Gr~ 220 (474)
+|.+-++.|+-.+.+.+...++.. |+++-.--|||..+ .-| ++.++- |..+|.+-. .-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs---~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS---FPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc---CCCC
Confidence 367778889988887777777654 64444434555322 146 333331 333332211 1227
Q ss_pred CccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchH---HHHHHHHHHcCC-CEEEEEEc
Q 011937 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEA-PVVFICRN 296 (474)
Q Consensus 221 ~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~---~EaLn~Aa~~~L-PvIfVv~N 296 (474)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++...++ .|+.|+.+
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 89999876789999999999999999999965 57889999999999999984 777777777777 68889999
Q ss_pred CCcceeeeccccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHH-----------HhcC---CCcE--EEEEE
Q 011937 297 NGWAISTNISEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM-----------AISE---KRPV--LVEAL 359 (474)
Q Consensus 297 N~yaist~~~~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~-----------ar~~---~gPv--LIe~~ 359 (474)
|+|+|++++.... ...++.+++++|||+++.|||+|+.++++++++|++. ||.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 9999999998653 4578999999999999999999999999997777653 4434 5899 99999
Q ss_pred EecCCC
Q 011937 360 TYRVGH 365 (474)
Q Consensus 360 TyR~~g 365 (474)
|-...|
T Consensus 282 T~kG~g 287 (785)
T PRK05261 282 TPKGWT 287 (785)
T ss_pred CCccCC
Confidence 998665
No 44
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.73 E-value=3.6e-17 Score=152.15 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=93.6
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE------ 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~------ 307 (474)
..|.||.++|.|+|+++| .+++.|||++|||++++. .++|.+|+++++|+++||.|| +|++......
T Consensus 46 ~~g~mG~~lp~AiGa~la----~~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALA----RPDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHh----CCCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 357899999999999887 468899999999999854 477999999999977777655 6887653322
Q ss_pred -----cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 308 -----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 308 -----~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.....++++++++||+++.+|+ +++++.++++++++ .++|+|||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1245689999999999999999 78999888888875 57999999975
No 45
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.73 E-value=2.2e-17 Score=151.38 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=95.7
Q ss_pred ccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc------
Q 011937 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS------ 306 (474)
Q Consensus 233 ~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~------ 306 (474)
....++||.++|.|+|++++. +++.|+|++|||++.+ ..++|++|..+++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 345689999999999999985 4788999999999986 4688999999999999999888765443321
Q ss_pred -----ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 307 -----EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 307 -----~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
......++.+++++||+++++|+ ++.++.++++++++ .++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 22345689999999999999998 68888888887764 68999999975
No 46
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.71 E-value=6.1e-17 Score=154.28 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=96.7
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEE-cCCcceeeecc--------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS-------- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~-NN~yaist~~~-------- 306 (474)
.++||+++|.|+|+++| .+++.|||++|||++... ..+|.+|+++++|+++||. |++|++.....
T Consensus 52 ~g~mG~~lpaaiGa~la----~p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~ 125 (196)
T cd02013 52 FGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRF 125 (196)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCc
Confidence 47899999999999887 478899999999999864 4569999999999888885 55787543211
Q ss_pred --ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 307 --~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
......++++.|++||+++++|+ ++.++.+++++|++.++. ++|+|||+++.+..
T Consensus 126 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~~ 182 (196)
T cd02013 126 VGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQEL 182 (196)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCccc
Confidence 11234689999999999999999 899999999999875444 78999999996543
No 47
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.70 E-value=4e-17 Score=160.53 Aligned_cols=218 Identities=18% Similarity=0.232 Sum_probs=141.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEec--cCcchHHHHHcCC
Q 011937 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWRGY 199 (474)
Q Consensus 123 ~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~--~yR~~g~~l~rG~ 199 (474)
+...++.+++.++-+.+ |.+ ++....+.| +.+.++.|---+.+++...++ |.|-|+. .|....+-|..|.
T Consensus 9 dlk~ls~~eL~~La~ei---R~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR 81 (270)
T PF13292_consen 9 DLKKLSIEELEQLAQEI---REF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGR 81 (270)
T ss_dssp HHTTS-GGGHHHHHHHH---HHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTT
T ss_pred HHHcCCHHHHHHHHHHH---HHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCc
Confidence 34568888888777665 443 223222333 456677787777788888887 7788877 6888888887774
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHH
Q 011937 200 TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHA 278 (474)
Q Consensus 200 ~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~E 278 (474)
. +-|..+. +-.++++.+...+ ..=.+..|+-++++++|+|+|.|.++.+.+..||+++||||+.-|+.+|
T Consensus 82 ~--~~f~TlR-------q~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~E 152 (270)
T PF13292_consen 82 R--DRFHTLR-------QYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFE 152 (270)
T ss_dssp C--CCGGGTT-------STTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHH
T ss_pred H--HHhchhh-------hcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHH
Confidence 2 1222222 1223333322222 2223567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcCCcceeeecccc------------c---c------------CcCHH------------HHHH
Q 011937 279 ALNFAAVMEAPVVFICRNNGWAISTNISEQ------------F---R------------SDGIV------------VKGR 319 (474)
Q Consensus 279 aLn~Aa~~~LPvIfVv~NN~yaist~~~~~------------~---~------------~~~ia------------~~a~ 319 (474)
|||-|+..+.++|+|+++|+.+|+.++..- + . ...+. ..++
T Consensus 153 ALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe 232 (270)
T PF13292_consen 153 ALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFE 232 (270)
T ss_dssp HHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CCCH
T ss_pred HHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHH
Confidence 999999999999999999999887654210 0 0 00000 2356
Q ss_pred HcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 320 AYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 320 ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.+|+.++ .|||||+.++.++++.+.+ -++|+||+++|
T Consensus 233 ~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 233 ELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp HCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 6799988 5899999999999988876 58999999987
No 48
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.70 E-value=7.4e-17 Score=150.46 Aligned_cols=112 Identities=27% Similarity=0.294 Sum_probs=93.5
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--------
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-------- 307 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~-------- 307 (474)
|+||.++|.|+|+++|. +++.|||++|||+++++. ++|.+|..+++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999984 578999999999998774 579999999999999988885 887542111
Q ss_pred ---------cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 308 ---------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 308 ---------~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.....++++++++||+++++|+ ++.++.+++++|++ .++|+|||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1134689999999999999999 58999998888876 57999999863
No 49
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.69 E-value=4.1e-16 Score=166.80 Aligned_cols=228 Identities=18% Similarity=0.207 Sum_probs=166.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEec--cCcchHHHHH
Q 011937 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLW 196 (474)
Q Consensus 120 ~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~--~yR~~g~~l~ 196 (474)
.+.+...+|.++|.++-+.+ |.+ .+...-+.| +..-++.|---+.|++...+. |.|.++. .|....|-|.
T Consensus 10 ~P~dLk~ls~~eL~~La~Ei---R~~--li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiL 82 (627)
T COG1154 10 SPADLKKLSIEELPQLADEI---REF--LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKIL 82 (627)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHh
Confidence 34445578888888877665 432 222222333 355678887777788888886 7787776 6888888888
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccch
Q 011937 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (474)
Q Consensus 197 rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~ 275 (474)
.|.. +-|..+.-. .+++......+ ..-+..+|+-++.|+.|+|+|.|..+++.++.||+++||||++-|+
T Consensus 83 TGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 83 TGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred cCch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 8763 344444321 12222222112 1234568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEEcCCcceeeecccc-------ccCc-------C--------------HH-----------
Q 011937 276 FHAALNFAA-VMEAPVVFICRNNGWAISTNISEQ-------FRSD-------G--------------IV----------- 315 (474)
Q Consensus 276 ~~EaLn~Aa-~~~LPvIfVv~NN~yaist~~~~~-------~~~~-------~--------------ia----------- 315 (474)
.+||||.|+ ..+-|+|+|+++|+.+|+.+...- ..+. + ..
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 999999998 555799999999999998765310 0000 0 00
Q ss_pred ---HHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC
Q 011937 316 ---VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS 367 (474)
Q Consensus 316 ---~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs 367 (474)
..++.+|+.++ -|||||++++..+++.+++ .++|+||+++|-+..|-.
T Consensus 234 ~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~ 285 (627)
T COG1154 234 VPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYK 285 (627)
T ss_pred CchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCC
Confidence 15678899988 5899999999999998887 689999999999887743
No 50
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.68 E-value=1.8e-16 Score=151.63 Aligned_cols=121 Identities=25% Similarity=0.306 Sum_probs=97.0
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------ 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~------ 307 (474)
..|+||+++|.|+|+++| .+++.|||+.|||+++.. ..+|.+|.++++|+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la----~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhh----CCCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 358899999999999887 468899999999999754 3669999999999888887774 765321100
Q ss_pred -------c-------ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 308 -------Q-------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 308 -------~-------~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
. ....++++.|++||+++.+|+ ++.++.+|+++|++.+++.++|+|||+++-+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0 013689999999999999999 89999999999987554457999999998553
No 51
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.68 E-value=3.2e-16 Score=146.90 Aligned_cols=116 Identities=23% Similarity=0.328 Sum_probs=93.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-------- 305 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~-------- 305 (474)
..|.||+++|.|+|+++| .+++.|||++|||++..+ +.| |.++..+++|+++||.||+ |++....
T Consensus 49 ~~g~mG~~~~~aiGa~~a----~~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLA----YPDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 358899999999998887 467899999999999876 555 8999999999988888884 7763211
Q ss_pred -cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++.+.+++||+++++|+ ++.++.+++++|++ .++|+|||+++.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 78888888887765 5799999999854
No 52
>PRK06163 hypothetical protein; Provisional
Probab=99.65 E-value=2.2e-15 Score=144.67 Aligned_cols=131 Identities=20% Similarity=0.202 Sum_probs=101.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHc-CCCEEEEEEcC-Ccceeeecc-ccccCc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAISTNIS-EQFRSD 312 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~-~LPvIfVv~NN-~yaist~~~-~~~~~~ 312 (474)
.|+||+++|.|+|+++| .+++.|||+.|||+++. ...+|.+++++ ++|+++||.|| +|++..... ......
T Consensus 56 ~GsMG~glpaAiGaalA----~p~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALA----QPKRRVIALEGDGSLLM--QLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHh----CCCCeEEEEEcchHHHH--HHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 68899999999999988 47889999999999974 34679999877 68988888777 687632211 112346
Q ss_pred CHHHHHHHcCce-EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 011937 313 GIVVKGRAYGIR-SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383 (474)
Q Consensus 313 ~ia~~a~ayGi~-~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~ 383 (474)
|+++.|++||++ +++|+ +..++..+++++++ .++|+|||+++.+.. +-+..+|++.|++.
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~~ 190 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIRE 190 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHHH
Confidence 899999999998 77898 99999999999875 589999999986532 22445677777643
No 53
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.65 E-value=9.7e-16 Score=144.50 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=91.3
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||++... ..+|.+|+++++|+++||.||+ |++....
T Consensus 49 ~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVA----RPDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHh----CCCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 47899999999999887 467899999999999853 4559999999999888887775 5532110
Q ss_pred --cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 --~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++++.|++||+++++|+ +..++.+++++|++ .++|+|||+++.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011134689999999999999999 67888888877765 6899999999964
No 54
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.65 E-value=3e-15 Score=142.05 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=93.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcC-CcceeeeccccccCcC
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNN-GWAISTNISEQFRSDG 313 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN-~yaist~~~~~~~~~~ 313 (474)
+|+||+++|.|+|+++|. +++.|||++|||++.. ..++|.+++.+++ |+++||.|| +|++...........+
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999884 5788999999999974 3467999999997 676666666 5766422111122468
Q ss_pred HHHHHHHcCceE-EEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 314 IVVKGRAYGIRS-IRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 314 ia~~a~ayGi~~-i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
+++.|++||+++ .+|+ ++.++.+++++|++ .++|+|||+.+-+..
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 999999999997 5898 89999999998875 578999999997654
No 55
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.65 E-value=1.3e-15 Score=143.11 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=94.1
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-------- 305 (474)
..|.||+++|.|+|+++| .+++.|||+.|||++.. ...+|.+|+++++|+++||.|| +|++....
T Consensus 46 ~~g~mG~~lp~aiGa~la----~~~~~vv~i~GDG~f~m--~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLV----YPDRKVVAVSGDGGFMM--NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHh----CCCCcEEEEEcchHHHh--HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 457899999999999988 46889999999999974 3466999999999988877655 67754211
Q ss_pred -cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 111124589999999999999998 99999999999986 5899999999854
No 56
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.63 E-value=3e-15 Score=140.91 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=91.5
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEE-EEcCCcceeeeccccc-cCc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFI-CRNNGWAISTNISEQF-RSD 312 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfV-v~NN~yaist~~~~~~-~~~ 312 (474)
.|+||.++|.|+|+++|.+ +.|||++|||++..+ ..+|.++..+++ |+++| ++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 6899999999999999853 789999999999643 356889999995 66555 5666888764322212 246
Q ss_pred CHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
++.+.|++||+++++|+| ++.++.+++++|+ ++|+|||+.|.+..
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 899999999999999997 7888888887775 58999999996543
No 57
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.62 E-value=2.7e-15 Score=138.44 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=91.3
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHc-CCCEEEEEEcC-CcceeeeccccccCcC
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAISTNISEQFRSDG 313 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~-~LPvIfVv~NN-~yaist~~~~~~~~~~ 313 (474)
.|+||.++|.|+|+++|.+ +.|||+.|||++... ..+|.+++.+ ++|+++||.|| +|++...........+
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 7899999999999999852 789999999999643 3558899998 59988888555 6775432211122578
Q ss_pred HHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 314 ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
+++.|++||+++++|+ ++.++.+++++|++ .++|+|||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9999999999999997 89999999999986 579999999874
No 58
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.62 E-value=5.4e-15 Score=163.20 Aligned_cols=229 Identities=11% Similarity=0.074 Sum_probs=167.3
Q ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccccccCCchHHHHHHHhhcCC-CCcEEec--cCcchH
Q 011937 117 ELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEA-QRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPG 192 (474)
Q Consensus 117 ~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~-~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~--~yR~~g 192 (474)
++-.+.+..+++.++|.++-..+ |.+ ++... .+.| +.+.++.|-=-+.|++...++ |.|.|+. .|....
T Consensus 81 ~i~~P~dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~ 153 (701)
T PLN02225 81 SIETPLQLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYA 153 (701)
T ss_pred hcCCHHHHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccch
Confidence 33344556689999998887766 543 33333 2433 355678888777888888887 7888887 699889
Q ss_pred HHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc
Q 011937 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (474)
Q Consensus 193 ~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~ 271 (474)
|-|..|.. +-|. . +. -.+++......+ ..=.+..|+-++.|++|+|+|.|..+++.++.||+++||||+
T Consensus 154 HKiLTGR~--~~f~-~--Rq-----~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGal 223 (701)
T PLN02225 154 HKVLTRRW--SAIP-S--RQ-----KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATI 223 (701)
T ss_pred hhHhcCCh--hhcC-c--cc-----cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcch
Confidence 99988863 2222 1 11 112222222111 222456799999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCCCEEEEEEcCCcceeee--------ccc--------------------------cccC--cCH-
Q 011937 272 SEGDFHAALNFAAVMEAPVVFICRNNGWAISTN--------ISE--------------------------QFRS--DGI- 314 (474)
Q Consensus 272 ~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~--------~~~--------------------------~~~~--~~i- 314 (474)
.-|+.+||||-|+..+-++|+|+++|+.+|+.+ +.. ..+. ..+
T Consensus 224 tgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 303 (701)
T PLN02225 224 TAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWA 303 (701)
T ss_pred hhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999999999877 110 0000 000
Q ss_pred --------------H-HHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 315 --------------V-VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 315 --------------a-~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
. ..++.+|+.++ .|||||+.++..+++.+.+. ..++|+||+++|-+..
T Consensus 304 ~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 304 AKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0 35678899988 58999999999999998863 1149999999998776
No 59
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.61 E-value=8.1e-15 Score=137.49 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=92.2
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE------ 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~------ 307 (474)
..++||.++|.|+|+++|. +++.||++.|||++.... .++|.+|+.+++|+++||.|| +|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 4689999999999999884 578899999999996421 577999999999987777666 5654322110
Q ss_pred ---cccCcCHHHHHHHcCceEEEE-eCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 308 ---QFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 308 ---~~~~~~ia~~a~ayGi~~i~V-DG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.....++.+.+++||+++++| +++++.++.+++++|++ .++|+||++..
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112368999999999999999 67888888888888875 58999999864
No 60
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.61 E-value=7.7e-15 Score=138.48 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=92.3
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNISE------ 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv-~NN~yaist~~~~------ 307 (474)
..|+||.++|.|+|+++|. +++.|||++|||++.. .++| |.+|+++++|+++|| +||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999884 5789999999999965 4566 889999999855555 5667886442211
Q ss_pred cccCcCHHHHHHHcC----ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 QFRSDGIVVKGRAYG----IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ~~~~~~ia~~a~ayG----i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++.+.|++|| +++++|+ ++.++.+|++++++ ..++|+|||+++.+
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 122468999999999 7999997 89999999998886 24789999999865
No 61
>PRK07524 hypothetical protein; Provisional
Probab=99.59 E-value=5.6e-15 Score=160.37 Aligned_cols=118 Identities=24% Similarity=0.307 Sum_probs=98.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceee---------ec
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST---------NI 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist---------~~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||++... . .+|.+|+++++|+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~-~-~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALG----APERPVVCLVGDGGLQFT-L-PELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHh----CCCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 48999999999999988 478899999999999743 4 44999999999988888877 786431 11
Q ss_pred cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 306 ~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
.......|+.+.|++||+++++|+ ++.++.+++++|++ .++|+|||++++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112235689999999999999998 99999999998876 5899999999999875
No 62
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.59 E-value=9.2e-15 Score=137.99 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=90.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcC-Ccceeeeccccc-cCc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNN-GWAISTNISEQF-RSD 312 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN-~yaist~~~~~~-~~~ 312 (474)
.|+||.++|.|+|+++|. ++.|||+.|||++..+. ++|.+|+.+++ |+++||.|| +|++........ ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 689999999999999983 67899999999997553 67999999995 988888777 477643211111 246
Q ss_pred CHHHHHHHcCceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 313 GIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
++++.|++||+++.+ |+ ++.++.++++ +++ .++|+|||+.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 87 8899988885 553 5799999999854
No 63
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.59 E-value=1.1e-14 Score=139.79 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=92.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------- 306 (474)
..|+||.++|.|+|+++| .+++.|||+.|||++..+ ..+|.+|+++++|+++||.|| +|++.....
T Consensus 46 ~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 357899999999998877 578899999999999864 356999999999976666555 676532100
Q ss_pred ------c----------cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 307 ------E----------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 307 ------~----------~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
. .....++.+.|++||+++++|+ +++++.+|+++|++ .++|+|||+++-+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0 0124689999999999999997 99999999998875 58999999999653
No 64
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.58 E-value=7.7e-15 Score=133.87 Aligned_cols=114 Identities=28% Similarity=0.397 Sum_probs=92.7
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec----c---
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI----S--- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~----~--- 306 (474)
..+.||.++|.|+|+++| .+++.|||++|||++... ..+|.+|.++++|+++||.|| +|++.... .
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 578999999999999997 678999999999999754 456999999999988888777 46543211 1
Q ss_pred ---c---cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 307 ---E---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 307 ---~---~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
. .....++.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 1 14456899999999999999996666999999999985 689999996
No 65
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.57 E-value=9.1e-15 Score=136.89 Aligned_cols=111 Identities=24% Similarity=0.271 Sum_probs=89.6
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc---------
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS--------- 306 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~--------- 306 (474)
+.||+++|.|+|+++|. ++.|||++|||++... ..+|.+|.++++|+++||.|| +|++.....
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~ 123 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFE 123 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhh
Confidence 67999999999999983 6789999999999753 466999999999987777666 576422111
Q ss_pred ccc---cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 307 EQF---RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 307 ~~~---~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
... ...++.+.|++||+++++|+ ++.++.+++++|++ .++|+|||+++
T Consensus 124 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 124 RLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 011 24689999999999999998 89999999998875 58999999975
No 66
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.57 E-value=1.6e-14 Score=158.09 Aligned_cols=119 Identities=23% Similarity=0.304 Sum_probs=100.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee----------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------- 304 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------- 304 (474)
.|+||+++|.|+|+++| .+++.|||++|||+++++....+|++|+++++|+++||.|| +|++...
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 47999999999998877 57899999999999988765567999999999988888888 6775321
Q ss_pred ------c-cccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 305 ------I-SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 305 ------~-~~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
. .... ...++++.+++||+++.+|+ +.+++..++++|++.++++++|+|||+.+
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 1111 34689999999999999998 99999999999998777778899999986
No 67
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.56 E-value=2.1e-14 Score=155.76 Aligned_cols=114 Identities=32% Similarity=0.394 Sum_probs=94.3
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN--------- 304 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~--------- 304 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|.++++|+++||.||+ |++...
T Consensus 405 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~ 478 (530)
T PRK07092 405 ASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRD 478 (530)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCC
Confidence 3689999999999999884 67899999999999876 3779999999999988888886 876321
Q ss_pred -ccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 305 -ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 305 -~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
........++++++++||+++++|+ +..++.+|+++|++ .++|+|||+++
T Consensus 479 ~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 479 VPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 1112245689999999999999999 78888888877764 68999999986
No 68
>PRK08266 hypothetical protein; Provisional
Probab=99.54 E-value=5.9e-14 Score=152.53 Aligned_cols=118 Identities=25% Similarity=0.332 Sum_probs=96.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-------- 306 (474)
.|+||+++|.|+|++++ .+++.|||++|||++..+ .++|.+|.++++|+++||.|| +|++.....
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 48999999999999877 578899999999999876 367999999999988888777 587532111
Q ss_pred --ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 307 --~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
......++++.|++||+++++|+ +++++.+++++|.+ .++|+|||++|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01123589999999999999999 78899988888875 5789999999988653
No 69
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.53 E-value=3.9e-14 Score=154.45 Aligned_cols=118 Identities=26% Similarity=0.340 Sum_probs=96.5
Q ss_pred cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc----
Q 011937 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQ---- 308 (474)
Q Consensus 234 ~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~~---- 308 (474)
+..|+||.++|.|+|+++| .+++.|||+.|||+|+. ..++|.+|.++++|+++||.||+ |++.......
T Consensus 405 ~~~GtMG~glPaAIGAkla----~P~r~Vv~i~GDG~F~m--~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLA----APDRKVVAIAGDGGFMM--NGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhh----CCCCcEEEEEcccHHhc--cHHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 3468899999999998777 57899999999999974 35679999999999999998886 6553322111
Q ss_pred -----ccCcC-HHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 309 -----FRSDG-IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 309 -----~~~~~-ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
.-... +.+.|++||+++++|+ +.+++..++++|++ .++|+|||+.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 11223 9999999999999999 99999999999987 68999999999765
No 70
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.53 E-value=2.6e-14 Score=157.07 Aligned_cols=119 Identities=23% Similarity=0.301 Sum_probs=95.5
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-----c--
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E-- 307 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-----~-- 307 (474)
.|+||+++|.|+|+++| .+++.||+++|||+++.. ..+|.+|.++++|+++||.|| +|++..... .
T Consensus 417 ~gsmG~glpaaiGa~lA----~pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAA----DPKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 48899999999999888 478899999999999864 366999999999988877766 576421100 0
Q ss_pred ---cc----------cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 ---QF----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ---~~----------~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.. ...|+++.|++||+++.+|+ ++.++.+|+++|++.+.+.++|+|||+++-+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999998 9999999999998754445899999999954
No 71
>PRK06154 hypothetical protein; Provisional
Probab=99.53 E-value=6.7e-14 Score=153.20 Aligned_cols=118 Identities=22% Similarity=0.213 Sum_probs=95.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-------- 306 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|+++++|+++||.|| +|++.....
T Consensus 430 ~gsmG~glpaaiGa~la----~p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLA----RPDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 57899999999999887 468899999999999754 466999999999988888777 577532110
Q ss_pred ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
......|+++.|++||+++++|+ ++.++..++++|++..+ .++|+|||+++.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 01113589999999999999999 99999999999986432 3689999999844
No 72
>PRK12474 hypothetical protein; Provisional
Probab=99.52 E-value=7.1e-14 Score=151.34 Aligned_cols=113 Identities=25% Similarity=0.254 Sum_probs=91.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+++.. ..+|.+|.++++|+++||.|| +|++....
T Consensus 388 ~gsmG~glpaAiGa~lA----~p~r~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVA----APDRKVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHH----CCCCcEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 48999999999999988 478899999999999854 466999999999987777777 58753210
Q ss_pred c------cc--ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 306 S------EQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 306 ~------~~--~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
. .. .+..|+++.|++||+++.+|+ ++.++..++++|++ .++|+|||+++
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 00 112489999999999999999 89999999999875 58999999974
No 73
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.52 E-value=8.9e-14 Score=152.59 Aligned_cols=116 Identities=24% Similarity=0.321 Sum_probs=95.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceee--------ecc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST--------NIS 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist--------~~~ 306 (474)
.|+||+++|.|+|+++| .+++.|||++|||+++.+ ..+|.+|+++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~~~paAiGa~la----~p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~ 480 (578)
T PRK06546 407 HGSMANALPHAIGAQLA----DPGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDF 480 (578)
T ss_pred cccccchhHHHHHHHHh----CCCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcc
Confidence 58999999999999988 467899999999999853 3569999999999888888774 66531 110
Q ss_pred -ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 307 -~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
......++++.|++||+++.+|+ ++.++.+|+++|++ .++|+|||+++-+.
T Consensus 481 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 532 (578)
T PRK06546 481 GTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDPN 532 (578)
T ss_pred cccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 11335689999999999999998 99999999999886 58999999998543
No 74
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.51 E-value=1e-13 Score=132.10 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=89.5
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc-c----
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE-Q---- 308 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~-~---- 308 (474)
.+.||.++|.|+|+++| .+++.||++.|||++ +.+ ..+|.+|.++++|+++||.|| .|++...... .
T Consensus 50 ~g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 37899999999999887 578999999999994 443 456999999999988888777 5665431110 0
Q ss_pred -----------ccCcCHHHHHHHcCceEE---EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 309 -----------FRSDGIVVKGRAYGIRSI---RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 309 -----------~~~~~ia~~a~ayGi~~i---~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
....++.+.++++|++++ +|+ ++.++.+++++|++ .++|+|||+.+.
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~--~~~el~~al~~al~----~~gp~vIev~~~ 184 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSG--DIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecC--CHHHHHHHHHHHHh----cCCCEEEEEECC
Confidence 012589999999999985 565 89999999999986 589999999764
No 75
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.51 E-value=6.6e-14 Score=153.39 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=93.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~--------- 305 (474)
.|.||+++|.|+|+++| .+++.|||++|||+++.. . .+|.+|.++++|+++||.||+ |++....
T Consensus 421 ~gsmG~~lp~aiGa~lA----~p~~~vv~i~GDG~f~~~-~-~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhh----cCCCeEEEEEecchhhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 48999999999999887 468899999999999743 4 459999999999999988886 5542210
Q ss_pred -cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++++++++||+++.+|+ ++.++.+++++|++ .++|+|||+++.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011224689999999999999997 99999888888876 5899999999854
No 76
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.51 E-value=5.1e-14 Score=138.16 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=96.6
Q ss_pred ccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc---
Q 011937 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE--- 307 (474)
Q Consensus 233 ~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~--- 307 (474)
+...++||+++|.|+|++.+ .+++.|||+.|||++ ..| .++|.+|+++++|+++||.||+ |++..-...
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 34457888888888887554 578899999999995 544 4669999999999999998885 663111000
Q ss_pred ------------------cccCcCHHHHHHHcCceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC
Q 011937 308 ------------------QFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST 368 (474)
Q Consensus 308 ------------------~~~~~~ia~~a~ayGi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~ 368 (474)
.....++++.|+++|++++. +...++.++.+++++|++ .++|+|||+.+--.-.|..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~~~~~ 207 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPTGWRF 207 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCCC
Confidence 11336899999999999874 444599999999999986 5789999998866655544
Q ss_pred CC
Q 011937 369 SD 370 (474)
Q Consensus 369 sD 370 (474)
.|
T Consensus 208 ~~ 209 (235)
T cd03376 208 DP 209 (235)
T ss_pred CH
Confidence 43
No 77
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.50 E-value=1.3e-13 Score=150.92 Aligned_cols=116 Identities=26% Similarity=0.320 Sum_probs=93.7
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN--------- 304 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~--------- 304 (474)
..|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++...
T Consensus 406 ~~G~mG~~lpaAiGa~la----~p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAA----HPGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHh----CCCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 458899999999999887 468899999999999753 356999999999987777666 5776310
Q ss_pred ccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 305 ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 305 ~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
........++++.|++||+++++|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0011234689999999999999998 99999999998875 5789999999864
No 78
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.50 E-value=6.5e-14 Score=153.94 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=96.5
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~------- 306 (474)
..|+||+++|.|+|+++| .+++.|||++|||+++.. ..+|.+|.++++|+++||.||+ |++.....
T Consensus 417 ~~G~mG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAA----DPDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhh----CCCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 358899999999999887 467899999999999754 3569999999999888888775 76421100
Q ss_pred ---ccc----------cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 ---EQF----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ---~~~----------~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
..+ ...++++.|++||+++.+|. +++++.+|+++|++...+.++|+|||+++.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 000 13689999999999999998 9999999999998654446899999999854
No 79
>PRK07586 hypothetical protein; Validated
Probab=99.50 E-value=1.1e-13 Score=149.40 Aligned_cols=113 Identities=27% Similarity=0.254 Sum_probs=90.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+++. ...+|.+|.++++|+++||.|| +|++....
T Consensus 384 ~g~mG~~lpaaiGa~lA----~p~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVA----CPDRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHh----CCCCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 48899999999999888 46889999999999975 4577999999999977777555 68753210
Q ss_pred -c--c---cc--cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 306 -S--E---QF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 306 -~--~---~~--~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
. . .. ...++++.|++||+++++|+ +..++.+++++|++ .++|+|||+++
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 01 23589999999999999998 89999999988875 57999999963
No 80
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.49 E-value=1.3e-13 Score=149.92 Aligned_cols=116 Identities=22% Similarity=0.325 Sum_probs=94.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-----c---
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-----~--- 306 (474)
.++||+++|.|+|+++|. +++.|||+.|||+++.. ..+|.+|.++++|+++||.|| +|++.... .
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 579999999999999884 67889999999999853 456999999999977777666 57653210 0
Q ss_pred -ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 307 -~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
..+...|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+++.+.
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 01234689999999999999999 89999999999876 57899999999654
No 81
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.49 E-value=1.7e-13 Score=149.56 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=93.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceee-ecc------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST-NIS------ 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist-~~~------ 306 (474)
..|.||+++|.|+|++++ .+++.|||++|||++.. ..++|.+|+++++|+++||.||+ |++.. ...
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~--~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLM--NGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998877 57889999999999974 34679999999999999998886 76432 110
Q ss_pred ---ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ---~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
......++++.+++||+++.+|+ +++++.++++++++ .++|+|||+++.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 11123589999999999999999 88899888888875 5899999999854
No 82
>PRK07064 hypothetical protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=149.91 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=92.9
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++....
T Consensus 404 ~g~mG~~lpaAiGa~lA----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhh----CcCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 47899999999999988 468899999999999753 367999999999987777666 57753211
Q ss_pred -cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 306 -~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
.......++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.++
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 111234689999999999999998 89999999998875 578999999986
No 83
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.49 E-value=1.2e-13 Score=152.61 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=94.0
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~------- 306 (474)
..|.||+++|.|+|+++| .+++.|||++|||+|+. ...+|.+|+++++|+++||.||+ |++.....
T Consensus 432 ~~g~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVA----LPDEEVICIAGDASFLM--NIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHh----CCCCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 358999999999999887 47889999999999974 34569999999999888888775 65422100
Q ss_pred ---ccc--cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 ---EQF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ---~~~--~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
... ...++++.|++||+++++|+ +++++.+|+++|++ .++|+|||+++.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 23689999999999999998 99999999998886 5789999999864
No 84
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.48 E-value=2.2e-13 Score=149.28 Aligned_cols=115 Identities=27% Similarity=0.405 Sum_probs=93.3
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~------- 307 (474)
.+.||+++|.|+|+++| .+++.|||++|||+++ +..++|++|+++++|+++||.||+ |++......
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999877 5688999999999996 457889999999999999998885 443221110
Q ss_pred ---cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ---~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++++.|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 1124689999999999999998 88999888888875 5899999999854
No 85
>PRK05858 hypothetical protein; Provisional
Probab=99.48 E-value=1.5e-13 Score=149.68 Aligned_cols=115 Identities=20% Similarity=0.145 Sum_probs=93.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|.||+++|.|+|+++| .+++.|||++|||+++.. ..+|.+|.++++|+++||.|| +|++....
T Consensus 406 ~gsmG~~lp~aiGa~la----~p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLA----RPSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHh----CCCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 47899999999999887 478899999999999754 356999999999988887777 57652210
Q ss_pred c-ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 S-EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~-~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ......++++.|++||+.+.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 0 11135789999999999999999 99999999999886 5899999999954
No 86
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.48 E-value=2e-13 Score=149.64 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=93.4
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee--------c-
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN--------I- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~--------~- 305 (474)
.|+||+++|.|+|+++| .+++.||+++|||+|+.. ..+|.+++++++|+++||.|| +|++... .
T Consensus 407 ~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 48899999999998877 578899999999999854 466999999999977776555 6875311 0
Q ss_pred cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
...+...++++.|++||+++.+|+ +..++.+++++|++ . +.++|+|||+++..
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 011234689999999999999998 89999999999885 2 35799999999855
No 87
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.48 E-value=2.3e-13 Score=148.32 Aligned_cols=116 Identities=16% Similarity=0.296 Sum_probs=93.6
Q ss_pred ccCCCCCchHHHHHHHHHhhhccC-CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee--------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN-------- 304 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~-d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~-------- 304 (474)
..|+||+++|.|+|+++|. + ++.|||++|||+|.. ...+|.+|..+++|+++||.|| +|++...
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~--~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTM--TMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhh--hHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3589999999999998874 4 789999999999974 3467999999999977777666 6765311
Q ss_pred -ccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 305 -ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 305 -~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
........++.+.|++||+++.+|+ ++.++..++++|++ .++|+|||+++.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 0111224689999999999999999 99999999998875 5789999999854
No 88
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.47 E-value=3.1e-13 Score=148.01 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=94.3
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceee---------e
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---------N 304 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist---------~ 304 (474)
..|+||+++|.|+|+++|. +++.|||++|||++... .++|.+|.++++|+++||.||+ |++.. .
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999883 67889999999999764 3779999999999988888885 54321 1
Q ss_pred cccc--ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 305 ISEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 305 ~~~~--~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.... ....++++.|++||+++++|+ +.+++..++++|++. .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0111 123589999999999999998 899999999988863 3689999999965
No 89
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.47 E-value=4.1e-13 Score=147.04 Aligned_cols=115 Identities=28% Similarity=0.415 Sum_probs=92.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|... +. +|.+|.++++|+++||.|| +|++....
T Consensus 423 ~g~mG~glpaAiGaala----~p~~~vv~i~GDGsf~m~-~~-eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLA----KPDETVVAIVGDGGFQMT-LQ-ELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHh----CCCCcEEEEEcchHHhhh-HH-HHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 47899999999999988 468899999999999853 44 5999999999987777766 57653210
Q ss_pred --cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 --~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++++.|++||+++.+|+ +..++.+++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011134689999999999999998 78888888888875 5799999999975
No 90
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.47 E-value=1.2e-13 Score=151.86 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=95.7
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-------- 305 (474)
..|.||+++|.|+|+++| .+++.|||++|||++..+ . .+|.+|.++++|+++||.|| +|++....
T Consensus 433 ~~g~mG~glp~aiGa~la----~p~r~vv~i~GDG~f~~~-~-~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIA----CPDRPVVGFAGDGAWGIS-M-NEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHh----CCCCcEEEEEcCchHhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 358899999999999887 467899999999999865 3 45999999999988888666 67642110
Q ss_pred -c-ccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 306 -S-EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 306 -~-~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
. ... ...++.+.|++||+++++|+ +++++.+++++|++.. +.++|+|||+.+-+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 0 011 23589999999999999998 9999999999998743 2368999999996544
No 91
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.47 E-value=3.3e-13 Score=147.90 Aligned_cols=118 Identities=24% Similarity=0.278 Sum_probs=95.1
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~---------~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++... .
T Consensus 420 ~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMA----LPEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHh----CCCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 48899999999999888 478899999999999753 4679999999999888887774 664211 0
Q ss_pred ccc--ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~--~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
... ....|+++.|++||+++++|+ ++.++.+++++|.+.++ .++|+|||+++.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 111 123689999999999999998 99999999999987433 3689999999964
No 92
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.47 E-value=2.1e-13 Score=148.36 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=92.1
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc------cc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------EQ 308 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------~~ 308 (474)
.|+||+++|.|+|+++| .+++.|||++|||+++. ...+|.+|+++++|+++||.|| +|++..... ..
T Consensus 403 ~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTA----CPNRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhc----CCCCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 48999999999999887 47889999999999974 4577999999999977777655 687543211 11
Q ss_pred ccCcCHHHHHHHcCce----EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 309 FRSDGIVVKGRAYGIR----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 309 ~~~~~ia~~a~ayGi~----~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
....++++.+++||++ +.+|+ +..++.+++++|++ .++|+|||+++-
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 2346899999999996 89998 89999999988875 578999999873
No 93
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.47 E-value=2.6e-13 Score=148.78 Aligned_cols=118 Identities=21% Similarity=0.289 Sum_probs=94.4
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-----c---
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-----~--- 306 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++.... .
T Consensus 429 ~g~mG~~lpaaiGa~la----~p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIA----APDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhh----CCCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 47999999999999887 468899999999999864 366999999999988777766 57653210 0
Q ss_pred --ccccC-cCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 --EQFRS-DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 --~~~~~-~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
..... .++++.|++||+++.+|+ +++++..++++|++.. +.++|+|||+++.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 01222 489999999999999998 9999999999998643 24689999999965
No 94
>PRK08322 acetolactate synthase; Reviewed
Probab=99.47 E-value=3.3e-13 Score=146.76 Aligned_cols=115 Identities=19% Similarity=0.300 Sum_probs=93.1
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------~ 305 (474)
.|.||+++|.|+|+++| .+++.|||++|||++... ..+|.+|.++++|+++||.|| +|++... .
T Consensus 405 ~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLV----HPDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHh----CCCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 57999999999999887 478899999999999854 356999999999977777665 6775321 0
Q ss_pred cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......|+++.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011224689999999999999998 89999999998875 5799999999854
No 95
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.46 E-value=4.2e-13 Score=147.75 Aligned_cols=115 Identities=22% Similarity=0.317 Sum_probs=93.9
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~---------~ 305 (474)
.|+||+++|.|+|+++| .+++.|||+.|||+++.. ..+|.+|+++++|+++||.||+ |++... .
T Consensus 429 ~gsmG~glpaaiGa~lA----~p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIA----HPDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHh----CCCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 48899999999999887 578899999999999754 3569999999999888888775 764210 0
Q ss_pred cccc--cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~~--~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
...+ ...++++.|++||+++.+|+ ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1111 23689999999999999998 99999999999886 4789999999965
No 96
>PLN02573 pyruvate decarboxylase
Probab=99.46 E-value=3.5e-13 Score=147.97 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=93.7
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc----ccc
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS----EQF 309 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~----~~~ 309 (474)
..|+||+++|.|+|+++|. +++.|||++|||+|+. ...+|.+|+++++|+++||.|| +|++..... ...
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~ 499 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVI 499 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCcccc
Confidence 3589999999999998884 6889999999999974 4467999999999977777666 587643211 112
Q ss_pred cCcCHHHHHHHcC-----ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 310 RSDGIVVKGRAYG-----IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 310 ~~~~ia~~a~ayG-----i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
...++++.|++|| +++.+|+ +..++.+++++|++. +.++|+|||+++-
T Consensus 500 ~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 500 KNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 3468999999985 8999999 899999999998742 2478999999883
No 97
>PRK08611 pyruvate oxidase; Provisional
Probab=99.45 E-value=4.3e-13 Score=147.10 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=93.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------~ 305 (474)
.|.||+++|.|+|+++| .+++.|||++|||++... ..+|.+|+++++|+++||.|| +|++... .
T Consensus 407 ~g~mG~glpaaiGa~la----~p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIA----FPDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHh----CCCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 48899999999999887 468899999999999854 466999999999977777666 6765210 0
Q ss_pred cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++++.|++||+++++|+ +++++.+|+++|++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 99999999998875 5899999999965
No 98
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.45 E-value=3.8e-13 Score=147.24 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=94.5
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------- 306 (474)
..|+||+++|.|+|+++| .+++.|||+.|||+|... ..+|.+|.++++|+++||.|| +|++.....
T Consensus 419 ~~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~ 492 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKR 492 (572)
T ss_pred CcccccchhHHHHHHHHh----CCCCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 358999999999999988 467899999999999754 366999999999988887777 577532110
Q ss_pred ---ccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 ---EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ---~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
..+ ...++++.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 493 IVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred cccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011 23689999999999999998 99999999998875 5899999999976
No 99
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.45 E-value=6.3e-13 Score=145.28 Aligned_cols=115 Identities=24% Similarity=0.325 Sum_probs=93.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++... .
T Consensus 413 ~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVG----KPDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHh----CCCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 37999999999999988 467899999999999754 366999999999988887776 4654210 0
Q ss_pred cc-c-ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SE-Q-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~-~-~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.. . ....++++.|++||+++++|+ ++.++.+++++|++ .++|+|||+++-+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11 1 134689999999999999999 89999999999985 5799999999865
No 100
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.45 E-value=5.4e-13 Score=146.61 Aligned_cols=116 Identities=23% Similarity=0.335 Sum_probs=93.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceee---------ec
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---------NI 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist---------~~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+++.. ..+|.+|.++++|+++||.||+ |++.. +.
T Consensus 436 ~gsmG~glpaaiGa~lA----~p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMA----HPDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHh----CCCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 47999999999999888 468899999999999754 4679999999999888887775 55321 11
Q ss_pred cccc--cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~~--~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.... ...++++.|++||+++.+|+ +..++.+++++|++. .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 1111 23689999999999999998 999999999999862 3689999999854
No 101
>PRK08617 acetolactate synthase; Reviewed
Probab=99.45 E-value=5.2e-13 Score=145.52 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=92.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-----c---
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-----~--- 306 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++.... .
T Consensus 413 ~g~mG~~lpaaiGa~la----~p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhh----cCCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 47899999999999887 478899999999999753 466999999999988777666 56643210 0
Q ss_pred -ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 -~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
......++++.|++||+++.+|. ++.++.+++++|++ .++|+|||+++.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 01124689999999999999998 89999999998875 5789999999865
No 102
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.45 E-value=6.1e-13 Score=145.74 Aligned_cols=116 Identities=26% Similarity=0.327 Sum_probs=93.3
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|... ..+|.+|.++++|+++||.|| +|++....
T Consensus 420 ~g~mG~glpaaiGa~la----~p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFA----MPDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhh----CCCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 47899999999999888 478899999999999754 466999999999988888777 46643210
Q ss_pred ccc-c-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQ-F-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~-~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
... . ...++++.|++||+++.+|+ ++.++..|+++|.+. .++|+|||+++-+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 1 23689999999999999999 999999999988852 3789999999864
No 103
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.44 E-value=7e-13 Score=144.96 Aligned_cols=115 Identities=17% Similarity=0.266 Sum_probs=94.4
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~--------- 305 (474)
.|.||+++|.|+|+++|. +++.|||+.|||+++.. ..| |.+|.++++|+++||.||+ |++....
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 479999999999999884 67899999999999864 455 9999999999988888775 8764321
Q ss_pred -cccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -~~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
...+ ...++++.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 1111 23689999999999999999 89999998888875 5799999999854
No 104
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.44 E-value=7.3e-13 Score=145.17 Aligned_cols=117 Identities=24% Similarity=0.269 Sum_probs=93.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN--------- 304 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~--------- 304 (474)
..|+||+++|.|+|+++| .+++.|||++|||+++.. ..+|.+|.++++|+++||.|| +|++...
T Consensus 421 ~~gsmG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~ 494 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLA----FPDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGR 494 (574)
T ss_pred CcchhhchHHHHHHHHHh----CCCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCc
Confidence 347899999999999888 468899999999999754 466999999999988887766 5764211
Q ss_pred cccc--ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 305 ISEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 305 ~~~~--~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.... ....++++.|++||+++.+|+ ++.++.+++++|.+. .++|+|||+++-+
T Consensus 495 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 0111 123689999999999999998 999999999988862 2789999999965
No 105
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.44 E-value=1.2e-12 Score=132.89 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=100.6
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~-------- 306 (474)
+.+|.++|.|+|+++| .+++.|||+.|||++ +.| ...|.+|+++++|+++||.||+ |+......
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 6789999999999887 578899999999997 455 3459999999999888888775 66533110
Q ss_pred --------ccccCcCHHHHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCC
Q 011937 307 --------EQFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRT 377 (474)
Q Consensus 307 --------~~~~~~~ia~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~ 377 (474)
......++...|+++|+.++ ++.-.++.++.+++++|++ .+||+|||+.+--.-.+ .-.+..++
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~---~~~~~~~~ 216 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFN---GRNTSTKS 216 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC---CcCCcccC
Confidence 00123589999999999987 3233389999999999986 58999999876433222 11234567
Q ss_pred HHHHHHHH
Q 011937 378 LDEIEYWK 385 (474)
Q Consensus 378 ~~E~~~w~ 385 (474)
+.++.+|.
T Consensus 217 ~~~~~~~~ 224 (301)
T PRK05778 217 PAYMREYY 224 (301)
T ss_pred HHHHHHHH
Confidence 77877775
No 106
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.44 E-value=8.2e-13 Score=145.18 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=93.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN--------- 304 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~--------- 304 (474)
..|+||+++|.|+|+++|. +++.|||+.|||+|.. ...+|.+|+++++|+++||.||+ |++...
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m--~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQM--NLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 4589999999999999884 5789999999999974 34669999999999988888886 553210
Q ss_pred ccc---cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 305 ISE---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 305 ~~~---~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
... .....++.+.+++||+++++|+ +.+++.+++++|++ .++|+|||+++..
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 000 1113589999999999999998 89999999988876 5799999999953
No 107
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.44 E-value=9.5e-13 Score=143.94 Aligned_cols=115 Identities=22% Similarity=0.303 Sum_probs=92.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||+.|||++... .. +|.+|.++++|+|+||.||+ |++....
T Consensus 413 ~g~mG~~l~~aiGa~la----~p~~~vv~i~GDG~f~m~-~~-eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLA----VPDKVVINFTGDGSILMN-IQ-ELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHh----CCCCcEEEEecCchhccc-HH-HHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 48999999999999988 357889999999999864 34 49999999999888887775 6542110
Q ss_pred -cccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -~~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.... ...++.+.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0011 23589999999999999998 89999999988875 5789999999976
No 108
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.43 E-value=1.8e-12 Score=134.64 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=98.9
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeeccccccCc
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQFRSD 312 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~-yaist~~~~~~~~~ 312 (474)
..|+||.++|.|+|+++|. +++.|||+.|||++.. ...+|.+++.+++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999884 5788999999999963 3467999999997 8888888876 55432111112346
Q ss_pred CHHHHHHHcCc-eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 011937 313 GIVVKGRAYGI-RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIE 382 (474)
Q Consensus 313 ~ia~~a~ayGi-~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~ 382 (474)
++.+.|++||+ .+++|+ +.+++.+++++|.+ .++|+|||+++-....-.- +.-..++.|++
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~~~~l---~rp~~~p~e~~ 354 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGSRADL---GRPTTSPPENK 354 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCccCC---CCCCCCHHHHH
Confidence 89999999997 577776 99999999999875 5789999999865443221 22235565543
No 109
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.43 E-value=5.9e-13 Score=145.33 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=93.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceee---------e-
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---------N- 304 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist---------~- 304 (474)
.|+||+++|.|+|+++| .+++.|||++|||++... . .+|.+|.++++|+++||.||+ |++.. .
T Consensus 411 ~g~mG~~l~aaiGa~la----~~~~~vv~~~GDG~f~~~-~-~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVA----KPESTVICITGDGSFQMN-L-QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhh----CCCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 47899999999999887 467889999999999864 3 469999999999999998886 44321 0
Q ss_pred cc-ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 305 IS-EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 305 ~~-~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.. ......++++++++||+++++|+ +.+++.+++++|++ .++|+|||+++.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 00 11124689999999999999999 78999999998886 4799999999964
No 110
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.43 E-value=7.8e-13 Score=144.07 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=93.1
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|... ..+|.+|.++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la----~p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVA----RPDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHh----CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 48899999999999888 468899999999999754 366999999999977777666 57643110
Q ss_pred c-ccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 S-EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~-~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ... ...|+++.|++||+++.+|+ +++++.+|+++|++ .++|+|||+++.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 011 23689999999999999998 99999999998876 5789999999965
No 111
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.43 E-value=1e-12 Score=144.74 Aligned_cols=116 Identities=23% Similarity=0.288 Sum_probs=93.0
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHc-----CCCEEEEEEcC-Ccceeeec----
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-----EAPVVFICRNN-GWAISTNI---- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~-----~LPvIfVv~NN-~yaist~~---- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+... ..+|.+|+++ ++|+++||.|| +|++....
T Consensus 414 ~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFA----HPDRPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHh----CCCCcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 47899999999999888 4688999999999996431 2569999999 89988888877 47542110
Q ss_pred --------cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 --------SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 --------~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......++++.|++||+++++|+ +.+++..++++|.+ .++|+|||+++.+
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011134679999999999999999 89999999999886 5899999999965
No 112
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.43 E-value=3.9e-13 Score=132.11 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=90.7
Q ss_pred ccCCCCCchHHHHHHHHHh-hhccCCceEEEEeCCCccc-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-----
Q 011937 235 ISSPIATQLPQAVGVAYSL-KMEKKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS----- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~-k~~~~d~vvv~~~GDGa~~-eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~----- 306 (474)
..+.||+++|.|+|+++|. +...+++.|||+.|||++. .| +. .+..+..+++|+++||.||+ |++.....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~-~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FG-ALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HH-HHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3488999999999998771 1114688999999999884 34 33 46777889999999888885 66432111
Q ss_pred -----------ccccCcCHHHHHHHcCceEEE---EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 -----------EQFRSDGIVVKGRAYGIRSIR---VDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 -----------~~~~~~~ia~~a~ayGi~~i~---VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
......|+++.|++||+++++ |+ ++.++.+|+++|++ +.++|+|||+.+.-
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~c 204 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTPC 204 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCCC
Confidence 012346899999999999986 77 79999999998885 25789999998743
No 113
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.43 E-value=1.1e-12 Score=143.23 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=92.1
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-ccee------e--ecc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS------T--NIS 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yais------t--~~~ 306 (474)
.|+||+++|.|+|+++| +++.|||+.|||++++. ..+|.+|+++++|+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 48999999999999997 26789999999999854 3569999999999999888886 4211 0 000
Q ss_pred ccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
... ...++++.|++||+++.+|+ +++++..++++|++ .++|+|||+++.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 111 34689999999999999998 99999999998875 5789999999854
No 114
>PLN02470 acetolactate synthase
Probab=99.42 E-value=1.3e-12 Score=143.65 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=92.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++... .
T Consensus 425 ~g~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHh----CCCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 48999999999999988 468889999999999854 467999999999988877766 5653210 0
Q ss_pred cccc---------cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQF---------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~~---------~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.... ...++++.|++||+++++|+ +..++.+|+++|++ .++|+|||+++-+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0000 01589999999999999998 89999999999886 4789999999964
No 115
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.42 E-value=1.3e-12 Score=143.18 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=92.2
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-c--cee----e--e-c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W--AIS----T--N-I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-y--ais----t--~-~ 305 (474)
.|+||+++|.|+|+++| +++.|||++|||+++.. ..+|.+|+++++|+++||.||+ | ... . . .
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 48999999999999988 26789999999999754 3559999999999999998886 3 110 0 0 0
Q ss_pred ccc-ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 SEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~~~-~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
... .+..++++.|++||+++++|+ ++.++.+++++|++ .++|+|||+++-+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 011 135689999999999999998 99999999999976 5789999999854
No 116
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.41 E-value=1.1e-12 Score=131.79 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=88.1
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcccc-chHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-GDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~e-G~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~------- 307 (474)
+++|.++|.|+|+++| .+++.|||+.|||++.. | ...+.+|+++++||++||.||+ |++......
T Consensus 68 ~~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 4788999999999887 57899999999999842 3 2346679999999888888774 665321100
Q ss_pred --------c-ccCcCHHHHHHHcCceEE---EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 --------Q-FRSDGIVVKGRAYGIRSI---RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 --------~-~~~~~ia~~a~ayGi~~i---~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ....++++.|+++|++++ +|. ++.++.+++++|++ .+||+|||+.+.-
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~c 202 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSNC 202 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCCC
Confidence 0 112367999999999985 676 99999999999986 5899999997644
No 117
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.40 E-value=1.1e-12 Score=142.87 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=90.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-----ccc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----EQF 309 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-----~~~ 309 (474)
.|+||+++|.|+|+++|. + +.+|+++|||+++. ...+|.+|.++++|+++||.|| +|++..... ..+
T Consensus 402 ~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 489999999999999883 3 34578999999974 4567999999999977777666 677643211 122
Q ss_pred cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
...++++.|++||+++.+|+ +..++.+++++|.+. .++|+|||+++-
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 521 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLP 521 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECC
Confidence 34689999999999999999 999999999998862 456899999873
No 118
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.39 E-value=1e-12 Score=145.17 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=92.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~--------- 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|.. ...+|.+|+++++|+++||.|| +|++....
T Consensus 446 ~G~mG~glpaaiGa~la----~p~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVG----RPDKEVWAIDGDGCFQM--TNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhcc----CCCCcEEEEEcchhhhc--cHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 47899999999999887 46888999999999975 3467999999999977777666 57642110
Q ss_pred c-ccc-----cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 S-EQF-----RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~-~~~-----~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ... ...|+++.|++||+++.+|+ +.+++.+++++|++. .++|+|||+++.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 0 011 12589999999999999998 999999999999863 3689999999965
No 119
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.37 E-value=3.2e-12 Score=128.44 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccc-cchHHHHHHHHHHcCCCEEEEEEcCC-cceee-------ec--
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNG-WAIST-------NI-- 305 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~-eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist-------~~-- 305 (474)
+.+|.++|.|+|+++| .+++.|||+.|||++. .| ...|.+|+++++|+++||.||+ |++.. +.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCc
Confidence 5589999999999776 5789999999999985 22 3559999999999999998885 66422 10
Q ss_pred -------cccccCcCHHHHHHHcCceEEEE-eCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -------SEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -------~~~~~~~~ia~~a~ayGi~~i~V-DG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.......|+.+.|+++|++++.. +-.++.++.+++++|++ .+||+|||+.+.-
T Consensus 134 ~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~pC 194 (280)
T PRK11869 134 KTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQPC 194 (280)
T ss_pred ccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 00112358999999999998872 23499999999999997 5899999998754
No 120
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.37 E-value=3.9e-12 Score=139.79 Aligned_cols=115 Identities=24% Similarity=0.353 Sum_probs=92.7
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||++... ..+|.+|+++++|+++||.|| +|++... .
T Consensus 418 ~gsmG~~lpaaiGa~la----~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVA----KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhh----cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 47999999999999887 467789999999999854 356999999999988888777 4764321 0
Q ss_pred c-ccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 S-EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~-~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ... ...++++.+++||+++++|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 1 111 23689999999999999998 89999999998875 5789999999853
No 121
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.36 E-value=1.3e-12 Score=142.88 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec----c-----
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI----S----- 306 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~----~----- 306 (474)
+.+|+++|.|+|+++| +++.|||+.|||++++. ..+|.+|+++++|+++||.|| +|++..-. .
T Consensus 425 ~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~ 497 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFE 497 (568)
T ss_pred cchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchhh
Confidence 6799999999999887 36789999999999854 256999999999977777777 57642111 0
Q ss_pred ---ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 307 ---~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
......++++.|++||+++.+|+ +..++.+++++|++ .++|+|||+++.
T Consensus 498 ~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~id 549 (568)
T PRK07449 498 RFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKTN 549 (568)
T ss_pred HhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeCC
Confidence 01124689999999999999998 89999999999875 579999999873
No 122
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.35 E-value=3.2e-12 Score=139.99 Aligned_cols=114 Identities=21% Similarity=0.391 Sum_probs=90.4
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee---------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN---------I 305 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~---------~ 305 (474)
.|+||+++|.|+|+++| .+++.|||++|||+|+.. ..+|.+|.++++|+++||.|| +|++... .
T Consensus 417 ~g~mG~glpaaiGa~lA----~p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheehee----cCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 58899999999999887 578889999999999754 466999999999977777666 5765321 1
Q ss_pred c-ccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 S-EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ~-~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ..+ ...++++.|++||+++.+|+ ++.++.++++ +.+ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 112 24689999999999999998 8999988886 332 4799999999965
No 123
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.34 E-value=1.6e-10 Score=125.09 Aligned_cols=268 Identities=18% Similarity=0.209 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccccCCchHHH--HHHHhhcCCCC------cEEecc-CcchHHHH---
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQG-RFSFYLTTIGEEAI--NIGSAAALSAD------DFILPQ-YREPGVLL--- 195 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~rqG-ri~f~~~~~GqEA~--~vg~a~aL~~~------D~v~~~-yR~~g~~l--- 195 (474)
..++.+-++..++=... ....+..+.| +++-.+++.---|+ -|+....+++. |.||-+ |=..|...
T Consensus 74 d~~lErrir~~irWna~-a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yAraf 152 (887)
T COG2609 74 DLELERRIRSLIRWNAH-AMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAF 152 (887)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHH
Confidence 34556666666666666 3333444433 34322222211112 25555567765 999986 55555432
Q ss_pred HcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCc-ccccCCCCCchHHHHHHHHHhhhc-------cCCceEEEEe
Q 011937 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNY-ITISSPIATQLPQAVGVAYSLKME-------KKDACAVAYT 266 (474)
Q Consensus 196 ~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~-~~~sg~lG~~lp~AvGaA~A~k~~-------~~d~vvv~~~ 266 (474)
.-|.--++-|..+..-. .|.+.++.+..+. +.+ .+.+++||-+...|+-.|.-.|+. .+++.|+||.
T Consensus 153 LeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afL 228 (887)
T COG2609 153 LEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFL 228 (887)
T ss_pred HhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEe
Confidence 24643344455555432 3666766555432 334 366889999999999999998873 4688999999
Q ss_pred CCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccc-CcCHHHHHHHcCceEEE-----------------
Q 011937 267 GDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIR----------------- 327 (474)
Q Consensus 267 GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~-~~~ia~~a~ayGi~~i~----------------- 327 (474)
|||.+.|+...+|+.+|++.+| ++||||+.|.-..+.|+..... ...+...+++.||.+++
T Consensus 229 GDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~g 308 (887)
T COG2609 229 GDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGG 308 (887)
T ss_pred cCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcc
Confidence 9999999999999999999999 8999999999888877654311 12344566677777765
Q ss_pred ----------------------------------------------------EeCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 011937 328 ----------------------------------------------------VDGNDALAVYTAVQAAREMAISEKRPVL 355 (474)
Q Consensus 328 ----------------------------------------------------VDG~D~~av~~A~~~A~~~ar~~~gPvL 355 (474)
--|||+..|++|++.|.+. .++|++
T Consensus 309 kL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptv 385 (887)
T COG2609 309 KLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTV 385 (887)
T ss_pred hHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceE
Confidence 3489999999999999984 458999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCC-CCHHHHHH
Q 011937 356 VEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGW-WSEQEETE 411 (474)
Q Consensus 356 Ie~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~-~te~e~~~ 411 (474)
|-++|.+..|-..+-.. -.....++.. ..|-|..||+.+ |+ ++++|+++
T Consensus 386 ilA~TIKGyglg~~~eg--~n~aHq~kkm--~~~~l~~~Rdr~---~ipvsd~e~e~ 435 (887)
T COG2609 386 ILAKTIKGYGLGEAAEG--KNIAHQVKKM--TPDQLKEFRDRF---GIPVSDAELEE 435 (887)
T ss_pred EEEeeeccccCchhhcc--cchhhhhhcC--CHHHHHHHHhhc---CCCCchhhhhc
Confidence 99999887764322111 1112222222 235567777776 43 56666665
No 124
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.30 E-value=2e-11 Score=122.73 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=91.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCC-ccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-----
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE----- 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDG-a~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~----- 307 (474)
..+.+|.++|.|+|+++| .++..||++.||| ++..|. ..|..|+++++|+++||.||+ |++..-...
T Consensus 57 ~~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~ 130 (279)
T PRK11866 57 IHGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPR 130 (279)
T ss_pred cccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCC
Confidence 357789999999999888 5788999999999 688774 459999999999999998885 655331110
Q ss_pred --c---c------cCcCHHHHHHHcCceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 308 --Q---F------RSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 308 --~---~------~~~~ia~~a~ayGi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
. . ...++.+.++++|++.+. ....++.++.+++++|++ .+||+|||+..-
T Consensus 131 g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~p 192 (279)
T PRK11866 131 GVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLSP 192 (279)
T ss_pred CceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 0 0 012899999999998764 355699999999999986 589999999764
No 125
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.30 E-value=1.9e-11 Score=123.36 Aligned_cols=116 Identities=19% Similarity=0.132 Sum_probs=88.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCc-cccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa-~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------- 306 (474)
.+++|.++|.|+|+++| .+++.|||+.|||+ ++.|. ..|.+|+++++|+++||.|| .|++.....
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 36889999999999887 57899999999996 77663 45999999999988888777 466532110
Q ss_pred cc---------ccCcCHHHHHHHcCceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 307 EQ---------FRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 307 ~~---------~~~~~ia~~a~ayGi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
.. ....++.+.|.++|+..+. +.-.++.++.+++++|++ .++|+|||+.+-
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~~ 202 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQP 202 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 00 0124688999999998774 334489999999999986 589999999753
No 126
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.26 E-value=2.2e-11 Score=122.80 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=84.8
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~------- 307 (474)
+.+|.++|+|+|+++| .+++.|||+.|||++ ..| ...|.+|+++++||++||.||+ |++......
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 4578889999998777 678999999999997 355 3559999999999999988885 665331110
Q ss_pred cc---------c--CcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 QF---------R--SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ~~---------~--~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.. . ..++...|.++|+.+...- .++.++.+++++|++ .+||+|||+.+.-
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~pC 187 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQPC 187 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeCCC
Confidence 00 0 1235567777777766522 489999999999986 5899999997643
No 127
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.24 E-value=4.6e-10 Score=113.73 Aligned_cols=183 Identities=19% Similarity=0.233 Sum_probs=127.4
Q ss_pred CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-cceee----
Q 011937 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---- 303 (474)
Q Consensus 230 ~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist---- 303 (474)
.++....+.+|.+.++|.|++.|.+..+++..|||+.|||++ .-| + ++|.-|...+.++++||.||+ |+.++
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S 139 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRS 139 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCC
Confidence 455667889999999999999998877778899999999998 455 3 779999999999999999996 44321
Q ss_pred ---ec---------cc-----cccCcCHHHHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 304 ---NI---------SE-----QFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 304 ---~~---------~~-----~~~~~~ia~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
|. .. .....++...+.++|++++ +++-.++.++.+++++|.+ .+||.||++.+--.-+
T Consensus 140 ~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC~~~ 215 (299)
T PRK11865 140 GSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPCPTG 215 (299)
T ss_pred CCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCC
Confidence 11 00 2224678899999999887 6677799999999999987 5899999998755443
Q ss_pred CCCCCCCC--------------CCCC-HHHHHHHHhcCCHH-------HHHHHHHHHcC---CCCHHHHHHHHHHHHHHH
Q 011937 366 HSTSDDST--------------KYRT-LDEIEYWKTERSPI-------NRFRNWVERQG---WWSEQEETELRSSIKKQL 420 (474)
Q Consensus 366 Hs~sDd~~--------------~YR~-~~E~~~w~~~~DPi-------~r~r~~L~~~G---~~te~e~~~i~~~~~~~v 420 (474)
.-..++.+ .||= +.. ++...+|. ..+++||..+| -+++++++++++++.+..
T Consensus 216 ~~~~~~~~~~~~klAvetg~~plye~~~g~---~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~~~~ 292 (299)
T PRK11865 216 WGFPPEKTIEIGRLAVETGYWPLFEIENGK---FKITYEPLHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYIDEKW 292 (299)
T ss_pred CCCCHHHHHHHHHHHHhcCceeEEEEECCe---eccCCCcccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHHHHHH
Confidence 32111100 1220 000 00011222 35778887666 357888777777766654
Q ss_pred H
Q 011937 421 L 421 (474)
Q Consensus 421 ~ 421 (474)
+
T Consensus 293 ~ 293 (299)
T PRK11865 293 K 293 (299)
T ss_pred H
Confidence 4
No 128
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.19 E-value=1.6e-10 Score=127.56 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=91.1
Q ss_pred ccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc----
Q 011937 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE---- 307 (474)
Q Consensus 233 ~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~---- 307 (474)
....+.||.++|.|+|+++| .+++.||+++|||++..... .+|.+|..+++|+++||.|| +|++......
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~ 473 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTGHQPNPGTG 473 (595)
T ss_pred cceeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCC
Confidence 33458899999999999887 46788999999999974223 45899999999988888777 5776432110
Q ss_pred ------cccCcCHHHHHHHcCceEEEEeC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 308 ------QFRSDGIVVKGRAYGIRSIRVDG-NDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 308 ------~~~~~~ia~~a~ayGi~~i~VDG-~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.....++.+.++++|+++++|.. .++.++.+++++|++ .++|++|++..
T Consensus 474 ~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 474 VTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 11246799999999999999863 455677888888875 57899999854
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.11 E-value=1.9e-10 Score=139.50 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=91.8
Q ss_pred ccccCCCCC--chHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHc--CCCEEEEEEcCC-cceeeec--
Q 011937 233 ITISSPIAT--QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM--EAPVVFICRNNG-WAISTNI-- 305 (474)
Q Consensus 233 ~~~sg~lG~--~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~--~LPvIfVv~NN~-yaist~~-- 305 (474)
.++.|.+|. ++|.|+|+++|. ++.|+|++|||++.. ...+|.+|+++ ++|+++||.||+ |++-...
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m--~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLH--DTNGLSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHh--hhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 345688888 599999999873 678999999999974 34669999884 999877777775 6553210
Q ss_pred ----cc----c----ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 ----SE----Q----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ----~~----~----~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.. . ....++.+.|++||+++.+|+ +++++.+|+++|.+ .++|+|||+.|.|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 1 123689999999999999999 99999999988875 5899999999954
No 130
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.06 E-value=9.6e-10 Score=115.46 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=89.5
Q ss_pred cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-C-cceeeecccc---
Q 011937 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-G-WAISTNISEQ--- 308 (474)
Q Consensus 234 ~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~-yaist~~~~~--- 308 (474)
+..|+||-+++.|+++|++ .+++.|+|+.||+||... .+ ++.++.+++||||.||.|| | |+.++...++
T Consensus 427 GtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfS-aM-E~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFS-AM-ELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcc-hh-hHHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 3457777777666666665 599999999999999643 23 3889999999988888755 4 4443322111
Q ss_pred ------------ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 309 ------------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 309 ------------~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....+.+.+++||..++.|+ .++++..++++|.. .+++|++|.++.-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 123467889999999999999 99999999999886 36699999998754
No 131
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=115.92 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=110.3
Q ss_pred CchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCc--ccccCCCCCc
Q 011937 165 IGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNY--ITISSPIATQ 242 (474)
Q Consensus 165 ~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~--~~~sg~lG~~ 242 (474)
+-||-..--+...|+++|+|++ +.| ..+||- .++ .-.+...+ .+-.|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviia---etG-------------tS~FG~-------~~~---~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIA---ETG-------------TSFFGA-------LDI---RLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEE---ccc-------------cccccc-------eee---ecCCCCeEEcccchhhcccc
Confidence 4466666667778888888887 222 123331 111 11111122 2346899999
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc------cCcCHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQF------RSDGIV 315 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~------~~~~ia 315 (474)
+|.|+|+++|. +++.+|.|+||||++. .-+++.+-.+++| |+|||++|+||.|..-..+.. ..-++.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999985 5689999999999984 4455999999999 899999999999876655421 124677
Q ss_pred HHHHHcCceEEEE--eCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 316 VKGRAYGIRSIRV--DGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 316 ~~a~ayGi~~i~V--DG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
+..++||..-... .-..-..+..+++.+.+ ..+++.||||++-+
T Consensus 491 ~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 8889998653322 11244566666666654 35689999999865
No 132
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.86 E-value=4.8e-09 Score=107.46 Aligned_cols=116 Identities=26% Similarity=0.381 Sum_probs=80.3
Q ss_pred CCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcC----C-C----
Q 011937 219 RQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME----A-P---- 289 (474)
Q Consensus 219 r~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~----L-P---- 289 (474)
.++++|....-+|...--|-||+.+.+|.|+++ +++|.+|+|++|||++.+|. +|+.|. + |
T Consensus 122 gGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~dG 191 (379)
T PF09364_consen 122 GGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDG 191 (379)
T ss_dssp TSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTTS-
T ss_pred CCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCc------ccccccccceeCcccCc
Confidence 468899887777777778999999999999876 47999999999999999885 334442 1 3
Q ss_pred -EEEEEEcCCcceeeeccc-cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHH
Q 011937 290 -VVFICRNNGWAISTNISE-QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAR 344 (474)
Q Consensus 290 -vIfVv~NN~yaist~~~~-~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~ 344 (474)
|+=|+.=|||.|+.|+-- ......+.+..++||+..+.|+|.|+.++...+..|+
T Consensus 192 aVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 192 AVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred eeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 778888899999988642 2344568899999999999999999998887665543
No 133
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.84 E-value=7.8e-09 Score=107.18 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=93.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecc--------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS-------- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~y-aist~~~-------- 306 (474)
-|.||.++|.|+|+..| +++.+||-+-||++|.+- -..|.++.+.++||-+++.||.- ++-+...
T Consensus 523 LGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~ry 596 (675)
T KOG4166|consen 523 LGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARY 596 (675)
T ss_pred ccccccCcchhhccccc----CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhh
Confidence 46888999999999776 799999999999999743 34599999999999999999963 3322211
Q ss_pred --ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 307 --~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
...-.+++.+.|.++|+++.||. .-+++.+.+++.+. .+||+|+|+.+-..-
T Consensus 597 sHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~ke 650 (675)
T KOG4166|consen 597 SHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPHKE 650 (675)
T ss_pred ccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccCcc
Confidence 11124789999999999999998 77888888888876 799999999886543
No 134
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.81 E-value=9.6e-09 Score=103.89 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=105.7
Q ss_pred ccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCc---------ceee
Q 011937 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW---------AIST 303 (474)
Q Consensus 233 ~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~y---------aist 303 (474)
.+..||||+.+|.|+|...| .+++.+|++.||-.++ -..|.|...+++++|.|+|+.||.| +++.
T Consensus 415 cgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~m 488 (592)
T COG3960 415 CGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDM 488 (592)
T ss_pred cCccCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCc
Confidence 35578999999999998554 7899999999999997 4678899999999999999999987 2222
Q ss_pred eccccc------------cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 304 NISEQF------------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 304 ~~~~~~------------~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
...-+. -+.|..+.++++|++.++|- ++.++..|+.+|.....+..-|++||++.-|...-|++
T Consensus 489 dy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 489 DYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred cceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 111111 12355678999999999998 99999999999998888889999999999998776655
No 135
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=4.8e-08 Score=102.41 Aligned_cols=116 Identities=15% Similarity=0.249 Sum_probs=93.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-------- 305 (474)
..|.||+-+.-++|+. +..+++-|++++|||++. +.+..|.++..++..+++++.+| ||+.....
T Consensus 442 gfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred cccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 4578898888888874 568999999999999996 67888999999999977777665 78632111
Q ss_pred ----------cccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 ----------SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 ----------~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
+......|++..|++||+.+++|. ++.++.+|++.|++ ..+++||++.|..
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P 576 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCC
Confidence 123445689999999999999998 99999888877775 7899999998754
No 136
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.55 E-value=4.2e-07 Score=96.56 Aligned_cols=118 Identities=16% Similarity=0.240 Sum_probs=88.5
Q ss_pred cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccc----
Q 011937 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ---- 308 (474)
Q Consensus 234 ~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~---- 308 (474)
...|++|+.+|.++|++.|. ++++||.|+|||++++- + +.+.+..+|++ |.||+++|+||.|.......
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT-v-QeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT-V-QEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCccceee-H-HHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 44689999999999999985 56889999999999863 4 44889999999 68889999999987665541
Q ss_pred ccCcCHHHHHHHcCceE-----EEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 309 FRSDGIVVKGRAYGIRS-----IRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 309 ~~~~~ia~~a~ayGi~~-----i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
...-++.++.++||..- .+|- .-.+..++.+.+... +.+++.||||+.-
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 12246788889997543 3332 445666777777621 3578999999873
No 137
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.45 E-value=3.6e-06 Score=85.55 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=106.0
Q ss_pred cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCC-ccccchHHHHHHHHHHcCCCEEEEEEcCC-ccee-------ee
Q 011937 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TN 304 (474)
Q Consensus 234 ~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDG-a~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yais-------t~ 304 (474)
...+..|-+++.|.|..+|. ++..||++.||| ++..|.- .|.-|...+..|++||.||. |+.+ ||
T Consensus 67 ~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~--~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp 140 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGN--HLIHALRRNHDITYIVVDNEVYGNTGGQASPTTP 140 (294)
T ss_pred ceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhH--HHHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence 34577888999999998885 455899999999 5577753 48888899999999999996 5432 22
Q ss_pred cc---------ccc-cCcCHHHHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC
Q 011937 305 IS---------EQF-RSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST 373 (474)
Q Consensus 305 ~~---------~~~-~~~~ia~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~ 373 (474)
.. ... ..-++...+.++|.+++ ++-=-++..+.+.+++|.+ .+||.||++.+--..+ -+. .
T Consensus 141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~sPC~t~---~~~-~ 212 (294)
T COG1013 141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLSPCPTG---NGR-N 212 (294)
T ss_pred CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEecCCCCC---CCc-c
Confidence 11 111 23378899999998876 5554578999999999988 4799999997644322 222 2
Q ss_pred CCCCHHHHHHHHh-cCCHHHHHHHHHHHc
Q 011937 374 KYRTLDEIEYWKT-ERSPINRFRNWVERQ 401 (474)
Q Consensus 374 ~YR~~~E~~~w~~-~~DPi~r~r~~L~~~ 401 (474)
.+...++...|.+ ..+|+-++.....+.
T Consensus 213 ~~~~~~~~~~ave~g~~pl~~~~~~~~~~ 241 (294)
T COG1013 213 TMKTIEEAKLAVETGYWPLYRYEPGKAEE 241 (294)
T ss_pred cchHHHHHHHHHhcCCceeeeccCcchhh
Confidence 3444555555532 457777766544333
No 138
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=2.2e-05 Score=86.26 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=87.3
Q ss_pred CCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHH----cC---C-CE
Q 011937 219 RQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV----ME---A-PV 290 (474)
Q Consensus 219 r~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~----~~---L-Pv 290 (474)
.++++|....-+|....-|.||+++.+|.|+++ ..+|-++.|++|||....|. +.++.. ++ . .|
T Consensus 135 gGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dGav 206 (793)
T COG3957 135 GGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDGAV 206 (793)
T ss_pred CCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCc----cccccccccccCccccCce
Confidence 458889887778888888999999999999876 57999999999999776664 222221 11 1 37
Q ss_pred EEEEEcCCcceeeecccc-ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHH
Q 011937 291 VFICRNNGWAISTNISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAV 340 (474)
Q Consensus 291 IfVv~NN~yaist~~~~~-~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~ 340 (474)
+=|..=|||.|+-|+.-. .+...+.+..++||..-+-|+|.|+.++.+.+
T Consensus 207 LPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 207 LPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred eeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 778888999998776533 33456889999999999999999998855444
No 139
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.55 E-value=0.0019 Score=67.33 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=72.9
Q ss_pred ceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-ccee-------eec---------cccccCcCHHHHHHHc
Q 011937 260 ACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNI---------SEQFRSDGIVVKGRAY 321 (474)
Q Consensus 260 ~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yais-------t~~---------~~~~~~~~ia~~a~ay 321 (474)
.-||++.|||.+ ..|. ..|.-|...+.+|++||.||. |+.+ ||. .......++...+.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 479999999965 6774 347777788889999998885 6543 111 1122235788999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 322 GIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 322 Gi~~i-~VD-G~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
|.+++ ++- |-++.++.+++++|.+ .+||.||++.+--.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~sPC~ 269 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYSPCI 269 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEccCc
Confidence 99877 453 4589999999999997 48999999987544
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.37 E-value=0.00069 Score=74.33 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=86.7
Q ss_pred ccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeecccc--
Q 011937 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQ-- 308 (474)
Q Consensus 233 ~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya-ist~~~~~-- 308 (474)
...+-.+|.++++|-|++++. .+.+|+++|||.| ..|. .+|..|...+.+++++|.+|.+. +++.+..-
T Consensus 424 ~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~ 496 (640)
T COG4231 424 VDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGT 496 (640)
T ss_pred hhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCc
Confidence 334556777788888887763 2789999999999 4554 45888888899999999999873 43322211
Q ss_pred --------ccCcCHHHHHHHcCceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEE----EEEEe
Q 011937 309 --------FRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLV----EALTY 361 (474)
Q Consensus 309 --------~~~~~ia~~a~ayGi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLI----e~~Ty 361 (474)
.....+.+..++.|+..++ ||=.|+.++.+++++|++ ..+|.+| +|.++
T Consensus 497 ~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak~~Cal~ 558 (640)
T COG4231 497 GVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAKRECALE 558 (640)
T ss_pred ccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEcCcchhh
Confidence 2234678889999998886 456889999999999887 5789888 55555
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.25 E-value=0.0012 Score=71.57 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeee--cc-------ccc---
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTN--IS-------EQF--- 309 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~--~~-------~~~--- 309 (474)
++-|+|++.|. ...+|.++||=++-. +. -+|-+......| +|+|++|||-+|-.- +. +.+
T Consensus 428 vSTA~Gi~~a~-----~~ptv~liGDLS~lh-D~-NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tP 500 (566)
T COG1165 428 VSTALGIARAT-----QKPTVALIGDLSFLH-DL-NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTP 500 (566)
T ss_pred HHHHhhhhhhc-----CCceEEEEechhhhh-cc-chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCC
Confidence 66688888863 345999999999932 11 124344444456 677778888776321 11 111
Q ss_pred cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.+-|++..|..||+.+.+++ .+.++.+++..+.. ..|-.+||++|.|
T Consensus 501 h~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 501 HGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 13589999999999999998 88898888888775 4678999999977
No 142
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.88 E-value=0.0076 Score=71.86 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=73.1
Q ss_pred ceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-ccee-------eecc---------ccccCcCHHHHHHHc
Q 011937 260 ACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS---------EQFRSDGIVVKGRAY 321 (474)
Q Consensus 260 ~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yais-------t~~~---------~~~~~~~ia~~a~ay 321 (474)
.-||++.|||.+ ..|. .+|.-+...+.+|.+||.||. |+.+ ||.. ......|+...+.+|
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 369999999965 6664 347778888999999998885 6542 2211 122345788899999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 322 GIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 322 Gi~~i-~VD-G~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
|.+++ ++- |-++.++.+++++|.+ .+||.+|++.+--.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYSPCI 1069 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEECCCc
Confidence 99877 565 6689999999999987 58999999987554
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.75 E-value=0.027 Score=50.60 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
..+|.|++++ +...++++.+|.|..+ ..+++-.|...++|||+|+-..+..... .......+....++.+.
T Consensus 48 ~~~A~G~a~~----~~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~~ 118 (154)
T cd06586 48 AGAAAGYARA----GGPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSIP 118 (154)
T ss_pred HHHHHHHHHh----hCCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHhh
Confidence 4556666665 3322333344888764 5577778888899999999766543211 11122234455666666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
.-.+.+. +..++...+.+|...+....||++|++
T Consensus 119 ~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 119 EANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred heEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 6666665 777888888888888777789999975
No 144
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.74 E-value=0.025 Score=52.58 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.+.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-+....... ...+...+..+.++.+--.
T Consensus 53 mA~gyar~---tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (164)
T cd07039 53 AASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVY 124 (164)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcE
Confidence 44555544 24445667777888776 4466778888899999999765533211 1112223667788888888
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
..+|+ ++..+.+++++|++.++...||+.|++
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 125 NETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 88888 899999999999998888889999987
No 145
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.66 E-value=0.027 Score=51.09 Aligned_cols=106 Identities=22% Similarity=0.158 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
..+|.|.+++. +.-.++++..|=|.++ ...++..|...++|+|+|.-+....-..... +...+.....+.+.
T Consensus 47 ~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~~ 118 (155)
T cd07035 47 VGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHHh
Confidence 44555555542 2222334444666554 5678888888999999999665432211111 11234455556665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEA 358 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~ 358 (474)
-...+++ ++.++...+.+|...+... ++|+.|++
T Consensus 119 ~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 5678887 8999999999999998887 79999986
No 146
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.11 E-value=0.038 Score=50.48 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
..+|.|.+++ +.. ++++..|-|..+ ...+|-.|...+.|+|+|+-+-...............+.....+. .
T Consensus 54 ~~~A~g~~r~----~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 124 (160)
T cd07034 54 AEAAIGASAA----GAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-P 124 (160)
T ss_pred HHHHHHHHhh----CCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-C
Confidence 3445555543 323 667777888885 556788888888999999965443211100000000111222222 3
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+...++. ++.++...+++|.+.++.+++|++|-.
T Consensus 125 ~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 125 WPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 6777776 899999999999999999889999864
No 147
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.11 E-value=0.071 Score=49.43 Aligned_cols=107 Identities=20% Similarity=0.125 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeec--cccc---cCcCHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNI--SEQF---RSDGIVV 316 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~--~~~~---~~~~ia~ 316 (474)
.-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|||+|+-+....- .... .... ..++..+
T Consensus 48 ~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (162)
T cd07038 48 GYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHH
Confidence 33455665543 233444445777665 45678888888999999996654221 1100 0000 1124566
Q ss_pred HHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 317 ~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
.++.+.-...+|. +++++..++++|...|..+++|++|++
T Consensus 121 ~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 121 MFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 7777877888887 889999999999999988889999986
No 148
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.06 E-value=0.035 Score=51.59 Aligned_cols=108 Identities=21% Similarity=0.080 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
.-+|.|.+++. +.-.++++..|=|.++ ..-+|..|...++|+|+|+-.-..........| ...+....++.+.
T Consensus 52 ~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~ 124 (172)
T PF02776_consen 52 AFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVT 124 (172)
T ss_dssp HHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGS
T ss_pred HHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcccc
Confidence 34555665542 3333444555556554 445677788889999999976654332211111 1235667788888
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHH-hcCCCcEEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMA-ISEKRPVLVEAL 359 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~a-r~~~gPvLIe~~ 359 (474)
-...+|+ +++++..++++|+..+ ....+|+.|++-
T Consensus 125 k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 125 KWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred chhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 8899998 8888899999999888 677899999973
No 149
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.54 E-value=0.26 Score=45.72 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHH-HcCCCEEEEEEcCCcceeeeccccccCcCHHH-H
Q 011937 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAA-VMEAPVVFICRNNGWAISTNISEQFRSDGIVV-K 317 (474)
Q Consensus 240 G~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa-~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~-~ 317 (474)
+.+..+|.|..++ .+..++|..+=|. |...-+|..|. ..++|||+|+-.-+..-.. ...|.....+.+ .
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~-~~~q~~~g~~~~~~ 114 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEK-IPAQIPMGRATPKL 114 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCC-CccccchhhhhHHH
Confidence 3445556666533 4456688887773 35667787888 8899999999544431000 011111111221 2
Q ss_pred HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 318 a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
....+++...|+ +++++ .++.+|.+.+.++++|+.|-+
T Consensus 115 l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 115 LDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 255788888887 78999 999999999999999999865
No 150
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.35 E-value=0.077 Score=63.06 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=78.7
Q ss_pred cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeec--cccc
Q 011937 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNI--SEQF 309 (474)
Q Consensus 234 ~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~y-aist~~--~~~~ 309 (474)
..+..||.....++|.+.+ ..+..+|+++|||.+ ..|. -+|.-|...+.+++++|..|.. ++++.+ ....
T Consensus 478 ~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~ 551 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGL 551 (1165)
T ss_pred CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCc
Confidence 3456889888999998775 234669999999999 4453 3477777888999988887765 554432 2234
Q ss_pred cCcCHHHHHHHcCceEEEEeCCCHHHH-----------------HHHHHHHHHHHhcCCCcEEE
Q 011937 310 RSDGIVVKGRAYGIRSIRVDGNDALAV-----------------YTAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~VDG~D~~av-----------------~~A~~~A~~~ar~~~gPvLI 356 (474)
+..+|....++.|+.-+.|--.|+... .+++++++ |+..|+++|
T Consensus 552 ~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsVi 612 (1165)
T PRK09193 552 SVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVL 612 (1165)
T ss_pred chhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEE
Confidence 567888999999998776643344444 34444444 246778777
No 151
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.27 E-value=0.09 Score=62.57 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=75.7
Q ss_pred cccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecc--ccc
Q 011937 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--EQF 309 (474)
Q Consensus 234 ~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~y-aist~~~--~~~ 309 (474)
..+..||..+..++|.+.+. .+..+|+++|||.+ ..|.. +|.-|...+.+++++|.+|.. ++++.+. ...
T Consensus 465 ~~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i 538 (1159)
T PRK13030 465 TGLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSI 538 (1159)
T ss_pred ceeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCC
Confidence 34568899899999988773 33569999999999 45543 677777888999999988876 4544322 222
Q ss_pred cCcCHHHHHHHcCceEEEEeCCCHHH----------------HHHHHHHHHHHHhcCCCcEEE
Q 011937 310 RSDGIVVKGRAYGIRSIRVDGNDALA----------------VYTAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~VDG~D~~a----------------v~~A~~~A~~~ar~~~gPvLI 356 (474)
....|+...++.|+.-+.|--.|+.. ...++++++. +.+|+++|
T Consensus 539 ~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~---~~~GvsVi 598 (1159)
T PRK13030 539 SVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR---ETPGVTVL 598 (1159)
T ss_pred CHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh---cCCCcEEE
Confidence 33344557889999887763223333 3344454442 45778777
No 152
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.79 E-value=0.17 Score=47.21 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.+.+ .+.-.++++..|=|.++ ..-++..|..-+.|+|+|+-+-....... ..+...+.....+.+--.
T Consensus 50 mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 121 (162)
T cd07037 50 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDYVRW 121 (162)
T ss_pred HHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhccceeeE
Confidence 45555554 34445666666777775 44667788888999999996543322111 111122444555555555
Q ss_pred EEEEeCCCHHH------HHHHHHHHHHHHhcCC-CcEEEEE
Q 011937 325 SIRVDGNDALA------VYTAVQAAREMAISEK-RPVLVEA 358 (474)
Q Consensus 325 ~i~VDG~D~~a------v~~A~~~A~~~ar~~~-gPvLIe~ 358 (474)
..+|. +++. +..++++|+..|+.+. ||++|++
T Consensus 122 ~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 122 SVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred EEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 66664 4444 6777778877777765 8999986
No 153
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.22 E-value=0.37 Score=53.03 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-++|||+|+-.............+...+....++.+--.
T Consensus 55 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 45555544 24446777777999886 3456778888899999999654432110011112223556777777778
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ ++.++.+++.+|+..|..+. |||.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 88888 89999999999998888764 88999764
No 154
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.12 E-value=0.42 Score=53.07 Aligned_cols=105 Identities=17% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.+.+ .+.-.++++..|=|+++ ..-++..|-.-++|||+|+-.-...- .....+...+....++.+--.
T Consensus 58 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~--~~~~~~q~~d~~~l~~~~tk~ 129 (588)
T PRK07525 58 MADGYTRV---TGRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKT--IGQGGFQEAEQMPMFEDMTKY 129 (588)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccc--CCCCCCcccchhhhhhhheeE
Confidence 44555443 24445677777999886 44667778888999999993221100 000111112455666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
..+|. ++..+..++++|+..|+.+.||+.|++-
T Consensus 130 ~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 130 QEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred EEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 77776 8899999999999999999999999874
No 155
>PRK08611 pyruvate oxidase; Provisional
Probab=94.08 E-value=0.43 Score=52.91 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.++++..|=|+++ ..-++.-|-.-++|||+|+-......... ..+...|..+.++.+.-
T Consensus 57 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (576)
T PRK08611 57 LAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAV 128 (576)
T ss_pred HHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhcccc
Confidence 345555543 34456677777999886 44667788888999999996554332111 11222356667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
...+|+ +++.+..++.+|+..|....||+.|++=
T Consensus 129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 129 YNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 677787 8889999999999888888899999863
No 156
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.08 E-value=0.19 Score=59.84 Aligned_cols=88 Identities=18% Similarity=0.105 Sum_probs=62.6
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeec--ccccc
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNI--SEQFR 310 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~y-aist~~--~~~~~ 310 (474)
....||.....++|.+.+. .+..+|+++|||.+ ..|. -+|.-|...+.+++++|.+|.. ++++.+ .....
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~ 566 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT 566 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence 4568888888888987662 34569999999999 4453 3477777888999998888875 554432 22333
Q ss_pred CcCHHHHHHHcCceEEEE
Q 011937 311 SDGIVVKGRAYGIRSIRV 328 (474)
Q Consensus 311 ~~~ia~~a~ayGi~~i~V 328 (474)
...|+...++.|+.-+.|
T Consensus 567 v~~i~~~~~a~GV~~v~v 584 (1186)
T PRK13029 567 VPQIARQVHAEGVRRIVV 584 (1186)
T ss_pred HHHHHHHHHhCCccEEEE
Confidence 345555789999987766
No 157
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.60 E-value=0.62 Score=51.28 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=70.1
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.++++..|=|+++ ..-++..|-.-+.|||+|+-.-...... ...+...+....++.+--.
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeE
Confidence 45555544 34455667777888886 4567778888899999999643321110 1111122445555555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
..+|. ++..+..++++|+..|....||+.|++=
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66676 8889999999999888888899999874
No 158
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.55 E-value=0.54 Score=52.11 Aligned_cols=105 Identities=22% Similarity=0.175 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|+ ..++-.++++..|=|+++ ..-+|..|-.-+.|+|.|.-.=.. +.--.+.+...|+...++.+--.
T Consensus 54 mAdgyar---~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~--~~~g~~afQe~D~~~l~~p~tk~ 125 (550)
T COG0028 54 AADGYAR---ATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPT--SLIGTDAFQEVDQVGLFRPITKY 125 (550)
T ss_pred HHHHHHH---HcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccc--cccCcchhhhcchhhHhhhhhee
Confidence 4455544 456778999999999996 556788888889999998852111 11111222234667777777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|. +++++-..+++|.+.|..++ ||++|++=
T Consensus 126 ~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 126 NFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 88888 99999999999999999887 99999763
No 159
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.46 E-value=0.58 Score=51.87 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=70.1
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.+.+ .+.-.++++..|=|+++ ..-++..|-.-+.|||+|+-.-... ......+...+....++.+--.
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~--~~~~~~~Q~~d~~~l~~~vtk~ 125 (579)
T TIGR03457 54 MADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTK--TIGLGGFQEADQLPMFQEFTKY 125 (579)
T ss_pred HHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccc--cCCCCCCcccchhhhhhcceeE
Confidence 44455443 34456667777999886 4456777888899999997322111 0001111122455666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
..+|. ++..+...+++|+..|..++||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 126 QGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 77776 8899999999999998888899999874
No 160
>PRK07064 hypothetical protein; Provisional
Probab=93.44 E-value=0.73 Score=50.53 Aligned_cols=107 Identities=21% Similarity=0.163 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccccccCcCHHHHHHHcCc
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|-.-+.|||+|+-+-. ..+......-....+..+.++.+--
T Consensus 56 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 45566554 34446777777999886 44667778888999999996422 1111000000011256667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...+|+ ++.++..++++|+..|..+ .||+.|++-
T Consensus 130 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 130 AAFRVR--SAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 777887 8889999999999888887 699999875
No 161
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.32 E-value=0.71 Score=51.05 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.+++ .+.-.++++..|=|+++ ..-++..|..-++|||+|+-.-...........+...+....++.+--.
T Consensus 62 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~ 135 (569)
T PRK09259 62 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKA 135 (569)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheee
Confidence 34444443 34445677777888886 3456778888899999999643322100001112223555667777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
..+|+ ++.++...+.+|+..|..+ .|||.|++-
T Consensus 136 s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 136 AFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 88887 8999999999999988886 489999875
No 162
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.27 E-value=0.72 Score=51.22 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.+++ .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...- .....+..-|....++.+--
T Consensus 52 ~~Adgyar~---tg~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 52 HAADGYARA---SGKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKL--IGNDAFQEIDALGIFMPITK 123 (586)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccc--cCCCCCccccHhhHHhhhcc
Confidence 345555544 34456677777888886 34567778888999999984322110 01111112355667777777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...+|+ ++.++..++.+|++.|..+. ||+.|++-.
T Consensus 124 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 124 HNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred eEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 778887 88999999999999888874 899998753
No 163
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.21 E-value=0.7 Score=51.16 Aligned_cols=105 Identities=22% Similarity=0.119 Sum_probs=71.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.++++..|=|+++ ..-++.-|-.-++|||+|+-.-..... ....+...+....++.+--.
T Consensus 64 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~--~~~~~Q~~d~~~l~~~vtk~ 135 (578)
T PRK06112 64 MADGYARV---SGKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQT--DRNAFQELDHIALFQSCTKW 135 (578)
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC--CCCCccccChhhhhccccce
Confidence 45555543 34556677777888876 456677788889999999944221110 11112223555667777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ +++.+...+.+|+..|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 136 VRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 77887 88999999999998888874 89999874
No 164
>PRK07524 hypothetical protein; Provisional
Probab=93.11 E-value=0.87 Score=49.90 Aligned_cols=108 Identities=20% Similarity=0.067 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc-ccCcCHHHHHHHcC
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAYG 322 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~-~~~~~ia~~a~ayG 322 (474)
-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-............. ....|....++.+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t 126 (535)
T PRK07524 53 FMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA 126 (535)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhc
Confidence 345555443 34445777777888886 446677888889999999954332111000000 11135667788787
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
-...+|+ +++.+...+.+|+..|+.+ .||+.|++-
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 127 AFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 7888887 8999999999999999876 599999774
No 165
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.05 E-value=0.68 Score=51.37 Aligned_cols=105 Identities=24% Similarity=0.218 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.. .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|+-....... ..+.+...|....++.+--.
T Consensus 67 mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~itk~ 138 (570)
T PRK06725 67 AAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLI--GKDGFQEADVVGITVPVTKH 138 (570)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCcccc--cCCCCcccchhhhhhcccee
Confidence 45555543 34455677778998886 445677777788999999854332211 11112223566777777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|. +++.+...+++|+..|+.+. ||+.|++-
T Consensus 139 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 139 NYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 78887 89999999999999988875 89999874
No 166
>PRK07586 hypothetical protein; Validated
Probab=93.00 E-value=0.69 Score=50.39 Aligned_cols=106 Identities=20% Similarity=0.059 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|.++ ...++..|..-+.|||+|+-.-..... ....+...|....++.+--.
T Consensus 54 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~vtk~ 125 (514)
T PRK07586 54 AADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHR--KYDAPLTSDIEALARPVSGW 125 (514)
T ss_pred HHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhcc--CCCcccccchhhhhccccce
Confidence 45555543 34445667777888775 445566788888999999964332111 01111123556667767667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~T 360 (474)
..+|. +++++.+++++|+..|+.+ .|||+|++-.
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 126 VRRSE--SAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 77787 8999999999999999987 6999998754
No 167
>PLN02470 acetolactate synthase
Probab=92.94 E-value=0.73 Score=51.20 Aligned_cols=106 Identities=25% Similarity=0.223 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|.-.-..... ..+.+...+....++.+--
T Consensus 65 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk 136 (585)
T PLN02470 65 FAAEGYAKA---SGKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSITK 136 (585)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhheE
Confidence 345565554 34455777778999886 445677788888999999854332110 1111222345566666666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
...+|+ ++.++.+++++|+..|+.+. |||.|++-
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 137 HNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 777786 89999999999999988875 99999875
No 168
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.93 E-value=0.69 Score=51.55 Aligned_cols=106 Identities=18% Similarity=0.046 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC-c
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG-I 323 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG-i 323 (474)
+|-|.|.+ .+.-.++++..|=|+++ ..-++.-|-.-++|||+|+-.=..... ..+.+...+..+.++.+- -
T Consensus 57 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~k 128 (597)
T PRK08273 57 MAVAHAKF---TGEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAGA 128 (597)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHHH
Confidence 45555544 24445666777899886 345677777888999999943221110 011111234555666655 4
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
...+|+ +++.+...+.+|+..|..++||+.|++-.
T Consensus 129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 129 FVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 566777 88899999999999888888999998753
No 169
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.90 E-value=0.75 Score=50.94 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... ...+...|....++.+--.
T Consensus 57 mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 128 (574)
T PRK07979 57 MADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKH 128 (574)
T ss_pred HHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccce
Confidence 45555543 34456777778999886 3456777788889999998544322111 1112223566677777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
..+|. +++++..++++|+..|..+. ||+.|++-.
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 129 SFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 78887 89999999999999888875 999998743
No 170
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.85 E-value=0.85 Score=50.98 Aligned_cols=106 Identities=24% Similarity=0.252 Sum_probs=71.7
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-..... ..+.+...|....++.+--.
T Consensus 84 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~--~~~~~q~~d~~~l~~~~tk~ 155 (612)
T PRK07789 84 AAEGYAQA---TGRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLI--GTDAFQEADIVGITMPITKH 155 (612)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCcCcccchhhhhhcceeE
Confidence 45555443 34455677777888886 345677777888999999954332111 11112223566677777667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~T 360 (474)
..+|+ ++..+..++.+|+..|+.+ .|||+|++-.
T Consensus 156 s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 156 NFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 77787 8999999999999888877 4899998753
No 171
>PRK08322 acetolactate synthase; Reviewed
Probab=92.79 E-value=0.89 Score=49.86 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|-.-++|||+|+-+-...... .+.+...|....++.+--
T Consensus 52 ~~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (547)
T PRK08322 52 FMAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLTK 123 (547)
T ss_pred HHHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhee
Confidence 345555544 34445666677888886 4466777888889999999543221111 111222355666666666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...+|. +++.+...+.+|+..|..+. ||+.|++-.
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 124 WTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 677777 89999999999999888874 899998743
No 172
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.75 E-value=0.82 Score=50.51 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.. .+.-.++++..|=|.++ ..-++..|-.-+.|||+|+-.-...... ...+...|....++.+--.
T Consensus 58 ~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~i~~~~tk~ 129 (572)
T PRK06456 58 AADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMG--KMAFQEADAMGVFENVTKY 129 (572)
T ss_pred HHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccC--CCCccccchhhhhhcccee
Confidence 45555543 34444566667999886 4456777888899999998543322111 1111122455667777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ +++++..++.+|+..|+.+. ||+.|++-
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 130 VIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 77886 89999999999999888875 99999874
No 173
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=92.75 E-value=0.72 Score=48.26 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=76.7
Q ss_pred chHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHH-H-HHH
Q 011937 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIV-V-KGR 319 (474)
Q Consensus 242 ~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia-~-~a~ 319 (474)
.+..|+|+++| +..+++.+-++.+. -.+|.|.+|+-..+|+++++-+-. +-++-. .+....|+. . +..
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~~ 129 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKGG 129 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhcC
Confidence 37788999887 34577777777776 478999999999999888887654 222111 111112221 1 111
Q ss_pred ---HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC
Q 011937 320 ---AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST 368 (474)
Q Consensus 320 ---ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~ 368 (474)
-++|+++. -.|+.+++.-+..|.+.+.+..-|+++-..++ + .|+.
T Consensus 130 ghgd~~~~vl~--p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~-l-sh~~ 177 (352)
T PRK07119 130 GHGDYRLIVLA--PSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV-L-GQMM 177 (352)
T ss_pred CCCCcceEEEe--CCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh-h-hCce
Confidence 13355554 45999999999999999988889999988884 3 5654
No 174
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.75 E-value=0.87 Score=50.27 Aligned_cols=106 Identities=21% Similarity=0.180 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|++. +.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...... ...+..-|....++.+--
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 136 (564)
T PRK08155 65 FIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIG--TDAFQEVDTYGISIPITK 136 (564)
T ss_pred HHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCccccc--CCCccccchhhhhhccce
Confidence 3466666542 3344566666888886 3456777888899999998543321111 111112244455555555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...+|+ ++.++...+++|+..|+.+ .||+.|++-
T Consensus 137 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 137 HNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 667776 8999999999999988887 499999884
No 175
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.61 E-value=0.73 Score=50.64 Aligned_cols=106 Identities=25% Similarity=0.242 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...... ...+...|....++.+--
T Consensus 52 ~~Adgyar~---sg~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (548)
T PRK08978 52 MAAIGYARA---TGKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIG--TDAFQEIDVLGLSLACTK 123 (548)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhccccCcee
Confidence 345555544 34456677777888886 4566778888899999998543321110 011111244455565655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
...+|+ +++++...+++|+..|+.+. |||.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 124 HSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred eEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 677787 89999999999999888874 99999874
No 176
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=92.59 E-value=0.71 Score=49.27 Aligned_cols=100 Identities=29% Similarity=0.327 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCc---ceeeeccccccCcCHHHHHHHc
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW---AISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~y---aist~~~~~~~~~~ia~~a~ay 321 (474)
+|-|.|.+. ++..+|++.-|-||++ +..-|.-|-.-+.|+|++- .+. +|.+ +.+...++...-+++
T Consensus 144 aAegYaR~s---gKPGvvlvTSGPGATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGt---DAFQEadiVgisRSc 212 (675)
T KOG4166|consen 144 AAEGYARSS---GKPGVVLVTSGPGATN---VVTPLADALADGVPLVVFT--GQVPTSAIGT---DAFQEADIVGISRSC 212 (675)
T ss_pred hhhhhhhhc---CCCcEEEEecCCCccc---ccchhhHHhhcCCcEEEEe--cccchhhccc---chhccCCeeeeeecc
Confidence 345666553 5678999999999996 3344666667788977654 332 2332 222333444444444
Q ss_pred -CceEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEE
Q 011937 322 -GIRSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEA 358 (474)
Q Consensus 322 -Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~ 358 (474)
-|.+. |. |++++-.-+.+|.+.|-.++ ||+|+++
T Consensus 213 TKwNvm-Vk--dVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 213 TKWNVM-VK--DVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ceehee-ee--cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 23333 44 89999999999999888774 8999986
No 177
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.58 E-value=0.96 Score=49.85 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.+++|..|=|.++ ..-++.-|-.-+.|||+|+-.-..... ....+..-|....++.+=-
T Consensus 60 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~--~~~~~q~~d~~~l~~~~tk 131 (557)
T PRK08199 60 MMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFR--EREAFQEIDYRRMFGPMAK 131 (557)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccC--CCCcccccCHHHhhhhhhc
Confidence 345555544 34455677777998886 456677778888999999853322111 0111112244555665555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
...+|. +++++..++.+|+..|..+. ||+.|++-
T Consensus 132 ~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 132 WVAEID--DAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 566775 89999999999999888874 89999764
No 178
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.56 E-value=1.1 Score=50.20 Aligned_cols=105 Identities=22% Similarity=0.198 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.. .+.-.++++..|=|+++ ..-+|--|..-+.|||+|+-+-.... ...+.+...+....++.+--.
T Consensus 75 aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~--~~~~~~Qe~d~~~~~~~vtk~ 146 (616)
T PRK07418 75 AADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPA--IGTDAFQETDIFGITLPIVKH 146 (616)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccc--cCCCCcccccHHHHhhhccee
Confidence 45555443 34555677777999886 44667788888999999985432110 001112223556666766666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ +++++..++.+|+..|..+. ||++|++-
T Consensus 147 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 147 SYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 67787 89999999999999998876 99999764
No 179
>PRK08266 hypothetical protein; Provisional
Probab=92.55 E-value=1.1 Score=49.26 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccc-CcCHHHHHHHcCc
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGI 323 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~-~~~ia~~a~ayGi 323 (474)
+|.|.+.+ .+.-.++++..|=|.++ ..-++.-|..-+.|||+|+-.-..........++. ..+....++.+--
T Consensus 58 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 131 (542)
T PRK08266 58 MAFGYARS---TGRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTK 131 (542)
T ss_pred HHHHHHHH---hCCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcc
Confidence 55565544 23345666677999886 44667788888999999995322110000001111 1356667777777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~T 360 (474)
...+|+ ++.++...+++|+..|..+ .|||.|++-.
T Consensus 132 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 132 WAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 788888 8899999999999888875 5899998754
No 180
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.38 E-value=0.92 Score=50.24 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|.++ ..-++..|-.-+.|||+|+-........ ...+...|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIG--EDAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccee
Confidence 45555543 34456777777999886 4466777888889999998544332111 1112223555677777667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
..+|+ ++..+..++++|+..|..+. ||+.|++=.
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 78887 89999999999999888874 999998744
No 181
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.37 E-value=1.3 Score=49.22 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=66.7
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHH
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~ 338 (474)
-.++++..|=|+++ ..-++.-|..-++|||+|+-.-...... ...+...|....++.+--...+|. +++++..
T Consensus 68 ~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~ 140 (588)
T TIGR01504 68 IGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EAALVPR 140 (588)
T ss_pred eEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CHHHHHH
Confidence 34555556888885 3456777788899999999544332211 111222356677777777788887 8999999
Q ss_pred HHHHHHHHHhcCC-CcEEEEEEE
Q 011937 339 AVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 339 A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
++++|+..|+.+. |||.|++-.
T Consensus 141 ~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 141 VLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHHHccCCCCeEEEEeCc
Confidence 9999999888865 899998754
No 182
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.34 E-value=1.1 Score=49.82 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+.. ++-.++++..|=|+++ ..-++.-|..-+.|||+|+-+-...... .+.+...|....++.+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH--KEDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccChhhHhhccee
Confidence 34555554320 3345566667888886 3456777778889999998654332111 111222355667776666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...+|. +++++..++++|++.|+.+. ||+.|++-.
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 677786 89999999999999988875 899998753
No 183
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.01 E-value=1.1 Score=49.33 Aligned_cols=105 Identities=21% Similarity=0.227 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|+. .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-..... ....+...|....++.+--.
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~ 125 (558)
T TIGR00118 54 AADGYARA---SGKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLI--GSDAFQEADILGITMPITKH 125 (558)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCCcccChhhhhcCccce
Confidence 45555544 34455777777888886 456677888889999999853221110 01111123455667777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ ++.++...+.+|+..|.... ||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 126 SFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 88887 88999999999998888874 89999874
No 184
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=92.00 E-value=1.1 Score=47.49 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=75.0
Q ss_pred chHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCH-HHHHHH
Q 011937 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGI-VVKGRA 320 (474)
Q Consensus 242 ~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~i-a~~a~a 320 (474)
.+.+|+|+++| +..+++.+-=++++ -.+|.+.+++..++|+|+++-+..- .++.........|+ ..+.-+
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhccc
Confidence 37788999887 23355544444443 4689999999999998888877542 12111111111222 233333
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC
Q 011937 321 YG-IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST 368 (474)
Q Consensus 321 yG-i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~ 368 (474)
+| .+.+.+.-.|+.+++..+..|.+.+.+.+-|++|-..+| -+|+.
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 33 333445556999999999999999998899999988883 45654
No 185
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=91.91 E-value=1.2 Score=40.95 Aligned_cols=99 Identities=21% Similarity=0.177 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHH-HHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGR 319 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn-~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~ 319 (474)
+++|+|+|+. + .+++++.+ ..+.. ..++.|. .++.+++|+++++...+++. ..++... ..+++ ...
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~a-~~~ 120 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDIA-LLR 120 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHHH-Hhc
Confidence 4456666542 3 45555555 44433 3445555 88999999999998776654 3333211 12222 222
Q ss_pred Hc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 320 AY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 320 ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
.+ |+.++.- .|+.++...++.|++ .++|++|-.
T Consensus 121 ~iPg~~v~~P--s~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 121 AIPNMTVLRP--ADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCCCCEEEec--CCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 22 4555443 489999999999987 467998853
No 186
>PRK12474 hypothetical protein; Provisional
Probab=91.87 E-value=1.2 Score=48.58 Aligned_cols=106 Identities=21% Similarity=0.046 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|+++ ..-++..|-.-+.|||+|+-........ .+.+...|....++.+--.
T Consensus 58 mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~ 129 (518)
T PRK12474 58 AADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSRW 129 (518)
T ss_pred HHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcC--CCCccccCHHHhhhcccce
Confidence 45555543 35556677777999885 3455667778889999999543221110 0111113566666666656
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
..+|+ +++++..++++|+..|..+. ||++|++=.
T Consensus 130 ~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 130 VHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 66776 89999999999998888875 899997743
No 187
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.87 E-value=1.1 Score=49.46 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.+.+ .+.-.++++..|=|+++ ..-++.-|-.-+.|||+|.-.-...... ...+...|....++.+--
T Consensus 67 ~~A~gyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~--~~~~q~~d~~~l~~~~tk 138 (571)
T PRK07710 67 HAAEGYARI---SGKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIG--SDAFQEADIMGITMPVTK 138 (571)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhhhcccc
Confidence 345555544 24445667777888886 4456777778889999998544322111 111112345556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...+|. +++.+...+++|+..|+.+. ||+.|++-.
T Consensus 139 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 139 HNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred eEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 667776 88899999999999888874 999998753
No 188
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.80 E-value=1.3 Score=49.09 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|-|.|.+ .+.-.++++..|=|+++ ..-++.-|-.-++|||+|.-.-..... ..+.+...|....++.+--
T Consensus 56 ~mAdgyar~---tg~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk 127 (572)
T PRK08979 56 HMADGYARA---TGKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLI--GNDAFQECDMIGISRPVVK 127 (572)
T ss_pred HHHHHHHHH---hCCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhHHhhhcee
Confidence 345555544 34445666667888886 335566777788999999843322111 0111222355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
...+|+ +++++...+++|+..|+.+. ||+.|++-
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 128 HSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 778888 89999999999999988865 89999864
No 189
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.73 E-value=1.5 Score=46.72 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
+.+|+|+++| +..+++.+-=++++ -.+|.|.+|+-.++|+|+++-|-.-. ++.+......|+. ...--|
T Consensus 62 ~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~g 130 (390)
T PRK08366 62 MAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDTG 130 (390)
T ss_pred HHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhcC
Confidence 7789999887 23455555444454 47899999999999988887654432 2322211112222 122336
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS 367 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs 367 (474)
|-.+.. .|+.+.+.-+..|.+.+.+-.-|++|-...|+..|-.
T Consensus 131 ~i~~~~--~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~ 173 (390)
T PRK08366 131 WMQFYA--ENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTY 173 (390)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccccc
Confidence 644444 5999999999999999988899999999888877533
No 190
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.70 E-value=1.5 Score=48.62 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.+. ..++-.++++..|=|.++ ..-++.-|-.-++|||+|+-.-..... ....+...+....++.+--.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGM--NMDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC--CCCCcceechhhhhhhcceE
Confidence 3444443 345556777778988886 446677788888999999954332110 11111112344455555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
..+|. +++.+...+.+|+..|....||+.|++-.
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 158 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPV 158 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 56666 78888888888888888888999998753
No 191
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.57 E-value=1.3 Score=48.93 Aligned_cols=106 Identities=21% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.+.+ .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|+-.-..... ....+...+....++.+--
T Consensus 59 ~~Adgyar~---tg~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk 130 (561)
T PRK06048 59 HAADGYARA---TGKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMI--GNDAFQEADITGITMPITK 130 (561)
T ss_pred HHHHHHHHH---hCCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCcccc--CCCCccccchhhhccCcce
Confidence 345555544 34456777777899886 345677778888999999843221110 0111112345556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...+|. ++.++..++.+|++.|+.+ .||+.|++-
T Consensus 131 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 131 HNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 666776 8899999999999888877 489999874
No 192
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.56 E-value=1.6 Score=48.64 Aligned_cols=106 Identities=23% Similarity=0.162 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|.-.-..... ..+.+...|....++.+--.
T Consensus 74 ~AdgYar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~itk~ 145 (587)
T PRK06965 74 AADGYARA---TGKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAI--GQDAFQECDTVGITRPIVKH 145 (587)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCcccccHHHHhcCCcce
Confidence 45565544 24445666667888886 345677777888999999843221100 01112223555666666667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~T 360 (474)
..+|. +++++...+.+|+..|+.+ .||+.|++-.
T Consensus 146 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 146 NFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 77787 8999999999999999887 4999998743
No 193
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.43 E-value=1.3 Score=49.51 Aligned_cols=105 Identities=24% Similarity=0.217 Sum_probs=71.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|+. .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|.-.-...... .+.+...+....++.+--.
T Consensus 64 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 135 (595)
T PRK09107 64 AAEGYARS---TGKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCTKH 135 (595)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhheEE
Confidence 44555443 34446677777999886 3456777788889999998654322111 1112223455666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ +++++..++.+|++.|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 136 NWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred EEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 77787 89999999999999999884 89999764
No 194
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=91.23 E-value=0.55 Score=46.31 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCccee-eeccccccCcCHHHHHHHc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS-TNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yais-t~~~~~~~~~~ia~~a~ay 321 (474)
+..++|++++- .+...+.-|-|=. ...|.|-+++..++|+|+++-|-.-.-. .++.. ...|+. .+..+
T Consensus 49 ~~~~~GAs~aG-----~ra~t~ts~~Gl~---lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~~-~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAAG-----ARAMTATSGPGLN---LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDLM-AARDS 117 (230)
T ss_dssp HHHHHHHHHTT-------EEEEEECCHHH---HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHHH-HTTTS
T ss_pred HHHHHHHHhcC-----CceEEeecCCccc---ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHHH-HHHhc
Confidence 67788888862 2333444444433 3567899999999998888876543211 11110 111221 22367
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST 368 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~ 368 (474)
||.++... |+.+.+..+..|.+.+.+..-|+++-...++.. |+.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~s-h~~ 161 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCS-HSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCT-C-E
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhhc-Ccc
Confidence 88877766 999999999999999999999999998887763 544
No 195
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.15 E-value=1.7 Score=47.69 Aligned_cols=106 Identities=25% Similarity=0.102 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.. .+.-.++++..|=|.++ ..-++.-|..-+.|||+|+-.-...... ...+...+....++.+--.
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 44454433 34456777777888886 4456777888889999999643321111 1112223445566665555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
..+++ +++++...+.+|++.|.... ||+.|++-.
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 66676 89999999999998888764 899998743
No 196
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.05 E-value=1.6 Score=48.20 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|.-.-...... ...+...+....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 128 (574)
T PRK06882 57 MADGYARS---TGKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVKH 128 (574)
T ss_pred HHHHHHHh---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccce
Confidence 45555443 34455667777888886 3456777778889999998543322110 1111123555666666667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~T 360 (474)
..+|. ++.++...+.+|+..|+.+ .|||.|++-.
T Consensus 129 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 129 SFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 77887 8899999999999888776 4999998753
No 197
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=91.02 E-value=1.4 Score=48.49 Aligned_cols=108 Identities=20% Similarity=0.101 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---ccccc-CcCHHHHHHH
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQFR-SDGIVVKGRA 320 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~---~~~~~-~~~ia~~a~a 320 (474)
+|-|.|.+ .+.-.++++..|=|+++ ..-++.-|..-++|||+|+-+......... ..+.. .++....++.
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 35555543 34456777777999886 345677788889999999854332110000 01110 1123455555
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.--...+|. ++..+.+++++|+..|....||+.|++-.
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 544566676 77788888888887777788999998754
No 198
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.00 E-value=1.5 Score=48.60 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.+.+ .+.-.++++..|=|+++ ..-++.-|-.-++|||+|.-.....-. ..+.+...+....++.+--.
T Consensus 63 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~itk~ 134 (566)
T PRK07282 63 EAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGI--GKDAFQEADIVGITMPITKY 134 (566)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccC--CCCCccccChhchhcCCCce
Confidence 44555443 34456777777999886 345677777788999999855332110 01111122445566666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
..+|+ ++.++..++.+|++.|+.+. ||+.|++-.
T Consensus 135 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 135 NYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred eEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 77787 88999999999999988874 999997743
No 199
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=90.80 E-value=1 Score=47.36 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=69.6
Q ss_pred CCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHH-HH--HHHcCCCEEEEEEcCCcceeeeccccc--cCc
Q 011937 238 PIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL-NF--AAVMEAPVVFICRNNGWAISTNISEQF--RSD 312 (474)
Q Consensus 238 ~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaL-n~--Aa~~~LPvIfVv~NN~yaist~~~~~~--~~~ 312 (474)
.=|.++++|+|+.+| .+++.++++=--++ |...-.| .+ ...|++|++++|-.-|.--. ...-|. .+.
T Consensus 34 ~E~~av~iaaG~~la-----tG~~~~v~mQnSGl--Gn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~-~depqh~~~G~ 105 (361)
T TIGR03297 34 NEGAAVGLAAGAYLA-----TGKRAAVYMQNSGL--GNAVNPLTSLADTEVYDIPLLLIVGWRGEPGV-HDEPQHVKQGR 105 (361)
T ss_pred CchHHHHHHHHHHHh-----cCCccEEEEecCch--hhhhhHHHhhccccccCcCeeEEEecCCCCCC-CCCchhhHHhH
Confidence 356778888888887 23344444322222 2222222 23 45689999999976664211 111111 123
Q ss_pred CHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
-..+..+++|+++..++ .+.++...++..|.+.+.+.++|+.|-+
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34467889999999995 3566788888888888888899987755
No 200
>PRK05858 hypothetical protein; Provisional
Probab=90.57 E-value=2 Score=47.21 Aligned_cols=106 Identities=18% Similarity=0.048 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-+-....... ......+....++.+--
T Consensus 56 ~~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (542)
T PRK05858 56 FAAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGM--GSLQEIDHVPFVAPVTK 127 (542)
T ss_pred HHHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCC--CCCcccchhhhhhhhhc
Confidence 345565554 34445666666888876 44667788888999999985433211110 11112345566777777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...+|+ +++.+...+.+|+..|..+ .|||.|++-
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 128 FAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 778887 7889999999999888776 589999874
No 201
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.55 E-value=1.9 Score=47.65 Aligned_cols=105 Identities=21% Similarity=0.153 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|+. .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|.-.-..... ....+..-|....++.+--.
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~ 127 (563)
T PRK08527 56 AADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCVKH 127 (563)
T ss_pred HHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhcccce
Confidence 44455433 34456677777988886 345677777888999999842211100 00111122444555656556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|+ +++++..++++|+..++.+. ||+.|++-
T Consensus 128 s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 128 NYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 66776 99999999999999888865 89999874
No 202
>PRK08617 acetolactate synthase; Reviewed
Probab=90.50 E-value=1.7 Score=47.80 Aligned_cols=96 Identities=21% Similarity=0.103 Sum_probs=65.5
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHH
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAV 336 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av 336 (474)
+.-.++++..|=|.++ ..-++.-|..-+.|||+|.-........ ...+...+....++.+--...+|+ +++++
T Consensus 66 g~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~--~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~ 138 (552)
T PRK08617 66 GKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRL--KRTHQSMDNVALFRPITKYSAEVQ--DPDNL 138 (552)
T ss_pred CCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccC--CCCccccchhhhhhhhcceEEEeC--CHHHH
Confidence 4445666677888886 3456777788889999998533221110 011112344566666766777887 89999
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 337 YTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 337 ~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..++.+|++.|..+. |||.|++-
T Consensus 139 ~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 139 SEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHHHHHccCCCCcEEEeCh
Confidence 999999999888774 89999875
No 203
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.41 E-value=1.4 Score=48.94 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeec----c--ccccC-cCHHHH
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI----S--EQFRS-DGIVVK 317 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~----~--~~~~~-~~ia~~ 317 (474)
+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-+-........ . ..+.. .+....
T Consensus 65 ~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 34455443 34445667777888886 456777888889999999965432211100 0 01111 255566
Q ss_pred HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 318 a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
++.+--...+|+ +++.+..++.+|+..|+.+ .|||+|++-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 666666667787 8999999999999998876 699999875
No 204
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=89.51 E-value=2.5 Score=47.01 Aligned_cols=104 Identities=27% Similarity=0.265 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeeccccccCcCHHHHHHHcCc
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya-ist~~~~~~~~~~ia~~a~ayGi 323 (474)
+|.|.|.. .+.-.++++..|=|.++ ..-++.-|-.-+.|||+|+-.-... +.. ..+...|....++.+--
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIGT---DAFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC---CCccccchhhhhcCcee
Confidence 44444433 34455677777888886 3456777778889999998532211 110 11112244555666666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
...+|+ +++++..++++|+..|+.+. ||+.|++-
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 677787 89999999999998888764 89999864
No 205
>PRK06154 hypothetical protein; Provisional
Probab=89.13 E-value=3 Score=46.22 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=62.2
Q ss_pred ceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHH
Q 011937 260 ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339 (474)
Q Consensus 260 ~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A 339 (474)
.++++..|=|.++ ..-++.-|..-+.|||+|+-....... ......+....++.+--...+|+ +++.+.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~----~~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGST----DVAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccc----cCCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888886 445677788888999999854322110 01111233455666656677787 89999999
Q ss_pred HHHHHHHHhcC-CCcEEEEEEE
Q 011937 340 VQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 340 ~~~A~~~ar~~-~gPvLIe~~T 360 (474)
+.+|+..|+.+ .||++|++-.
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHHhcCCCceEEEecch
Confidence 99999988886 5899998753
No 206
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=88.81 E-value=2.7 Score=44.94 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
+..++|++++ +..+.+.+-=.+++ -.+|.|.+|+-.++|+|+++-+-+..-..++. ....|+.. ++.-|
T Consensus 69 ~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i~--~d~~D~~~-~r~~g 137 (407)
T PRK09622 69 MSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNVN--GDHSDMYL-SRDSG 137 (407)
T ss_pred HHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCCC--chHHHHHH-HhcCC
Confidence 7788888887 22344444333343 47899999999999988888887753211111 11122222 23345
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC--CCcEEEEEEEecCCC
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISE--KRPVLVEALTYRVGH 365 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~--~gPvLIe~~TyR~~g 365 (474)
|.++. -.++.+++..+..|.+.|.+. .-|++|-..+++..|
T Consensus 138 ~ivl~--p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh 180 (407)
T PRK09622 138 WISLC--TCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSH 180 (407)
T ss_pred eEEEe--CCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhC
Confidence 55554 459999999999999988776 789999988876543
No 207
>PLN02573 pyruvate decarboxylase
Probab=88.65 E-value=2.7 Score=46.79 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeee---cccc---ccCcCHHHHH
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---ISEQ---FRSDGIVVKG 318 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~---~~~~---~~~~~ia~~a 318 (474)
+|-|.|.+ .+ -.++++..|=|+++ ..-++.-|..-+.|||+|+-.-....... .... .......+.+
T Consensus 69 mAdgyaR~---tg-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARA---RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHH---hC-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 44555543 34 56777888988886 34567777788899999996433221000 0000 0001112445
Q ss_pred HHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 319 ~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
+.+--...+|. ++..+.+.+++|+..|+.+.||+.|++-.
T Consensus 142 ~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 142 QTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred hceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 55555667777 88888888999988888888999998743
No 208
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.52 E-value=3.3 Score=45.86 Aligned_cols=104 Identities=16% Similarity=0.002 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|.-+-...... ...+...+..+.++.+-..
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~Q~~d~~~l~~~itk~ 127 (574)
T PRK09124 56 AAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIG--SGYFQETHPQELFRECSHY 127 (574)
T ss_pred HHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhcccceee
Confidence 45555543 23233444445777775 3345667777889999998543321110 0111112344555555455
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
..+|+ ++..+..++++|+..|....||+.|++
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 128 CELVS--NPEQLPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 56676 888888888888888887789999986
No 209
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=88.16 E-value=3.5 Score=38.61 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=40.2
Q ss_pred CCCEEEEEEcCCcceeeeccccccCcCHHHHHHHc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 287 ~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
++||++++..-+++...++. +..++ ...++. |+.++.-- |..+...+++.+.+ .++|++|-
T Consensus 103 ~~pv~i~~~~gg~~~~G~th---s~~~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 103 KVPIVIRGPNGGGIGGGAQH---SQSLE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred cCCEEEEEeCCCCCCcChhh---hhhHH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 58999999776765444431 22333 333333 66666554 88999999988886 46898873
No 210
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=88.14 E-value=2.5 Score=44.67 Aligned_cols=115 Identities=19% Similarity=0.167 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccccccCcCHHHHHHHc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~~~~~~~ia~~a~ay 321 (474)
+..|+|+++| +..+++.+-=++++ -.+|.+.+|+..++|+|+++-+-+ =+...|+.... .+-...+..++
T Consensus 60 ~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q-~D~~~~~~~~h 130 (375)
T PRK09627 60 ISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQ-GDVNQAKNPTH 130 (375)
T ss_pred HHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccch-HHHHHHhcCCC
Confidence 7788898887 23355555444454 367999999999999988776642 22222222110 11122232322
Q ss_pred C-ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC
Q 011937 322 G-IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST 368 (474)
Q Consensus 322 G-i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~ 368 (474)
| .+-+.+.-.|+.+++..+..|.+.+.+..-|++|-..+ ++ +|+.
T Consensus 131 gd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~ 176 (375)
T PRK09627 131 GDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMY 176 (375)
T ss_pred CCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCe
Confidence 2 22234556699999999999999999889999998887 44 5654
No 211
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=88.02 E-value=2.2 Score=47.44 Aligned_cols=109 Identities=20% Similarity=0.261 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCH-HHHHHH-
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGI-VVKGRA- 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~i-a~~a~a- 320 (474)
+.+|+|+++| +..+++.+-=.+++ -.+|.|.+|+...+|+|+++-+-. +.+|+...+....|+ ..+.-+
T Consensus 250 ~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~h 320 (562)
T TIGR03710 250 INMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGGH 320 (562)
T ss_pred HHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCCC
Confidence 7788888887 23344444444444 578999999999999877776553 222221111111222 222221
Q ss_pred --cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 321 --YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 321 --yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
++|.++ .-.|+.+++..+.+|.+.|.+..-|++|-...|.
T Consensus 321 gd~~~ivl--~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 321 GEFPRIVL--APGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCcCceEE--cCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 335555 4459999999999999999999999999988884
No 212
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=87.85 E-value=4.1 Score=43.42 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
+..++|+++| +..+++.+-=.+++ -.+|.|.+|+-.++|+|+++-|-..+- |..-.....|+. -.+..|
T Consensus 63 ~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~g 131 (394)
T PRK08367 63 ISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDTG 131 (394)
T ss_pred HHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hccccC
Confidence 7788888887 23344444333333 478999999999999999885554332 322110111221 223466
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC--CCcEEEEEEEecCCC
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISE--KRPVLVEALTYRVGH 365 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~--~gPvLIe~~TyR~~g 365 (474)
|-.+.. .|+.+++.-+..|.+.|.+. .-|+++-...||..|
T Consensus 132 ~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH 174 (394)
T PRK08367 132 WMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTH 174 (394)
T ss_pred eEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcC
Confidence 666554 59999999999999988843 479999999998764
No 213
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=87.79 E-value=3.6 Score=45.75 Aligned_cols=105 Identities=19% Similarity=0.003 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|.++ ..-++--|-.-+.|||+|.-.-...... ...+...+....++.+--.
T Consensus 56 mAdgyar~---tgk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQL---TGKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIG--SGFFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHh---hCCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCccccChhhhcccceee
Confidence 44455443 23334555556888775 3355777778889999998532211100 0111112333445545445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
..+|. +++.+..++.+|...|....||+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 66776 8889999999999888888899999864
No 214
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=87.33 E-value=4 Score=44.73 Aligned_cols=106 Identities=20% Similarity=0.087 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-.+.......-+ ...+....++.+--.
T Consensus 63 ~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence 55566554 34555666667888774 446677788888999999854332211100000 112334455555444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|. ++..+.+.+.+|+..|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 136 SIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 55664 88999999999998888875 79999875
No 215
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.46 E-value=2.3 Score=45.44 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|-|.|.+ .+.-.++++..|=|+++ ..-++.-|-.-+.|||+|+-.-...... .......+..+.++.+--.
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRG--CGANQTIDQPGLFGSYVRW 124 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhC--CCCCcccchhhHHhhccce
Confidence 45555543 34556777777888886 3456777777889999998543211100 0111112444556656555
Q ss_pred EEEEeCCCHHH------HHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALA------VYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~a------v~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|. ++.. +...+++|+..|..+. ||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 125 SLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred eeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 56664 3333 6677777777776654 89999884
No 216
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=85.37 E-value=5.6 Score=43.34 Aligned_cols=98 Identities=21% Similarity=0.177 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhhhccCCceEEEEe-CCCccccchHHHHHHHHH--------HcCCCEEEEEEcCCcceeeeccccccCcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAA--------VMEAPVVFICRNNGWAISTNISEQFRSDG 313 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~-GDGa~~eG~~~EaLn~Aa--------~~~LPvIfVv~NN~yaist~~~~~~~~~~ 313 (474)
++.|+|+|++ .-+++++++ .+-... .+.+-.|-++ .+++||+|+..|.+++.... +.+..+
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~~r--a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~d 271 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFAMQ--AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQDY 271 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHHHH--HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccCH
Confidence 4566676664 234444443 232221 2444556777 78899999998887654322 233334
Q ss_pred HHHHHHHc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 314 IVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 314 ia~~a~ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
+ ...... |+.++.-- |..+.+..++.|++ .++|++|-
T Consensus 272 ~-a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 272 A-AWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred H-HHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 4 333333 67766554 88888888888885 47899873
No 217
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=85.16 E-value=5.3 Score=45.01 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeeccccccCcCHHHHHHHcC
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~~~~~~~~~ia~~a~ayG 322 (474)
+.|+|+|++ .-+++++++ +.|.+-.+-+-.+.++..++||++++...|+.- ..++..+ ..+++-...--|
T Consensus 366 g~AaGlA~~-----G~~Pvv~~~--a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~iPg 436 (617)
T TIGR00204 366 TFAAGMAIE-----GYKPFVAIY--STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCIPN 436 (617)
T ss_pred HHHHHHHHC-----CCEEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcCCC
Confidence 345555542 234455554 455443333444677889999999998777641 1222222 233332222235
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+.++.-- |..++..+++.|++. .++|++|-.
T Consensus 437 l~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 437 MVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred cEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 6655544 888888888888852 348998843
No 218
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=84.25 E-value=6.3 Score=41.52 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeee-ccccccCcCHHHHHHH
Q 011937 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN-ISEQFRSDGIVVKGRA 320 (474)
Q Consensus 242 ~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~-~~~~~~~~~ia~~a~a 320 (474)
.+..++|+++| .-+..-...|.|-+ -.+|+|-+|+-..+|+|+++-+........ +... ..+-...|.-
T Consensus 59 a~s~v~GA~~a-----Gar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~d-q~D~~~~r~~- 128 (365)
T COG0674 59 AISAVIGASYA-----GARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGD-QSDLMAARDT- 128 (365)
T ss_pred HHHHHHHHHhh-----CcceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCccccccc-HHHHHHHHcc-
Confidence 47889999887 23445555566655 478999999999999999998876543222 1111 1122222222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
||+.+... |+.+.+.-.-.|.+.|.+..-|+++-..-++..
T Consensus 129 -g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 129 -GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred -CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 88888777 888888888888888888788999987777654
No 219
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=84.24 E-value=5.8 Score=44.38 Aligned_cols=106 Identities=19% Similarity=0.119 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHc--CCCEEEEEEcCCcceeeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~--~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~a 320 (474)
+.+|+|+++| | ..+++.+--.+++ ...|.|-.++.. .+|+|+++-|..-.. +.+...++.. .++.
T Consensus 59 ~~~~~GAs~a----G--~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~----~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS----G--LRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMH----SSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc----C--cceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCc----cchhhHhHHH-HHHh
Confidence 6688888886 2 2333333333332 245566555533 568888887652111 1122222322 3445
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
.+|+++... ++.+++..+.+|.+.+.+.+-|++|-..+ ++.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~-~l~ 166 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT-RIS 166 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee-eec
Confidence 688876655 89999999999999999999999998865 554
No 220
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=82.95 E-value=6.5 Score=44.60 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=53.9
Q ss_pred ccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHH
Q 011937 270 GTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMA 347 (474)
Q Consensus 270 a~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~a 347 (474)
.|.+ -.++++.+++..++||++|....+++. .+++. .+..+++-.-.--|+.+++-- |..++..+++.|++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~lr~iPn~~v~~Pa--D~~E~~~~~~~a~~-- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLASLRAIPNLSVWRPC--DGNETAAAWKYALE-- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh--
Confidence 5543 456788899999999999998776654 33433 223333332222366666655 88899999988884
Q ss_pred hcCCCcEEEEE
Q 011937 348 ISEKRPVLVEA 358 (474)
Q Consensus 348 r~~~gPvLIe~ 358 (474)
..++|++|-.
T Consensus 503 -~~~gP~~irl 512 (653)
T TIGR00232 503 -SQDGPTALIL 512 (653)
T ss_pred -cCCCcEEEEE
Confidence 2578998843
No 221
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=82.24 E-value=12 Score=35.05 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhhccC-CceEEEEeCCCccc-cchHHHHHH-HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKK-DACAVAYTGDGGTS-EGDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~-d~vvv~~~GDGa~~-eG~~~EaLn-~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ 319 (474)
++.|+|+|++ ++ ..+++..+++=... +-...+.+. ..+..++|+. |+..-+++....-....+..++ ....
T Consensus 61 vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~-~~~~ 134 (178)
T PF02779_consen 61 VGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDE-AILR 134 (178)
T ss_dssp HHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHH-HHHH
T ss_pred cceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccc-cccc
Confidence 5666777665 42 34555666554430 123444444 6777889988 5555544332221122223333 3344
Q ss_pred Hc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 320 AY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 320 ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
++ |+.++.-- |..++..+++.|++. +.++|++|-.
T Consensus 135 ~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 135 SIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp TSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 44 77777665 899999999988862 2478998854
No 222
>PTZ00089 transketolase; Provisional
Probab=80.53 E-value=8.6 Score=43.71 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHHc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~ay 321 (474)
.+|.|+|. .+.-.++++.+. .|.+ -.++.+..++..++||+||+...+++. ++++. ..+.+.+---
T Consensus 417 ~~AaGlA~----~~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~TH-----q~iedia~lR 484 (661)
T PTZ00089 417 AIMNGIAA----HGGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTH-----QPVETLALLR 484 (661)
T ss_pred HHHHHHHH----cCCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCc-----ccHHHHHHHh
Confidence 34555554 123345555553 6655 667779999999999999998777654 23332 1233333323
Q ss_pred ---CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 322 ---GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 322 ---Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
|+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 485 ~iPn~~V~~Pa--D~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 485 ATPNLLVIRPA--DGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred cCCCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 55555544 888888888888742 468999864
No 223
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=80.05 E-value=5.9 Score=49.65 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.+++|..|=|.++ ..-++.-|..-+.|||+|+-+-....... ......|....++.+--
T Consensus 353 fmAdGyAR~---TgkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~--ga~Q~iDq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARG---SLKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDA--GANQAINQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHH---hCCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcC--CCCcccchhhHHHhhhh
Confidence 356666655 35556777788888886 56778888889999999996644321110 11112244455555555
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 324 RSIRVDGNDALA------VYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~a------v~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
....|. ++.. +..++++|+..|+.+. |||.|++-
T Consensus 425 ~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 FFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 566663 3333 4567777777777774 89999985
No 224
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=79.45 E-value=11 Score=42.05 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeeccccccCcCHHHHHHHcC
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~~~~~~~~~ia~~a~ayG 322 (474)
++|.|+|+. + -++++..| ..|..=.+-+-.+.++..++||++++...++.. ..++.. ...+++-...--|
T Consensus 335 g~A~GlA~~----G-~~p~~~~f--~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~iP~ 405 (580)
T PRK05444 335 TFAAGLATE----G-LKPVVAIY--STFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCIPN 405 (580)
T ss_pred HHHHHHHHC----C-CeeEEEee--HHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcCCC
Confidence 445565552 3 34444444 345442333355667889999999998766532 122222 2233433333336
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+.++.-- |+.++..+++.|++. .++|++|-.
T Consensus 406 l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 406 MVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 6666655 899999999998862 368999854
No 225
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=78.87 E-value=17 Score=38.19 Aligned_cols=98 Identities=19% Similarity=0.109 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhhccCCceEEEEe-CCCccccchHHHHHHHHHHcC--------CCEEEEEEcCCcceeeeccccccCcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAAVME--------APVVFICRNNGWAISTNISEQFRSDG 313 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~-GDGa~~eG~~~EaLn~Aa~~~--------LPvIfVv~NN~yaist~~~~~~~~~~ 313 (474)
++.|+|+|++ | .++++++. .|=.. =.+.+-.+-++.++ +||+|++.+....-..+++.+ ..
T Consensus 87 vg~AaGlA~~----G-~~P~v~~~~~~f~~--ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~---~~ 156 (356)
T PLN02683 87 TGIGVGAAYA----G-LKPVVEFMTFNFSM--QAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ---CF 156 (356)
T ss_pred HHHHHHHHHC----C-CEEEEEEehhhHHH--HHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCcccc---CH
Confidence 4556666653 3 34454443 33222 12334456667665 999999887432222333322 22
Q ss_pred HHHHHHHc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 314 IVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 314 ia~~a~ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
+ ...... |+.++.-- |..+++.+++.|.+ .++|+.|-
T Consensus 157 ~-a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir 194 (356)
T PLN02683 157 A-AWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFL 194 (356)
T ss_pred H-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 3 334443 77777655 88899999988875 46899984
No 226
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=78.17 E-value=30 Score=35.04 Aligned_cols=84 Identities=20% Similarity=0.065 Sum_probs=57.4
Q ss_pred eEEEEeCCCc--cccchHHHHHHHHHHcCCCEEEEEEcCC---cceeeec--cccccCc-CHHHHHHHcCceEEEEeCCC
Q 011937 261 CAVAYTGDGG--TSEGDFHAALNFAAVMEAPVVFICRNNG---WAISTNI--SEQFRSD-GIVVKGRAYGIRSIRVDGND 332 (474)
Q Consensus 261 vvv~~~GDGa--~~eG~~~EaLn~Aa~~~LPvIfVv~NN~---yaist~~--~~~~~~~-~ia~~a~ayGi~~i~VDG~D 332 (474)
.++.++.||. .++|.....+.-|...++-++||+.+|. -+|.-.. ....... .+......|+.|++.|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888887778888888997777776553 2332110 0001111 45677889999988764 48
Q ss_pred HHHHHHHHHHHHH
Q 011937 333 ALAVYTAVQAARE 345 (474)
Q Consensus 333 ~~av~~A~~~A~~ 345 (474)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888888776653
No 227
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=78.12 E-value=12 Score=42.43 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHH-HHHHHcCCCEEEEEEcCCcc-eeeeccccccCcCHHHHHHHc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL-NFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaL-n~Aa~~~LPvIfVv~NN~ya-ist~~~~~~~~~~ia~~a~ay 321 (474)
++|.|+|+ ..-+++++++. .|.+ -..+.+ +.++..++||+|++...|+. ..+++..+ ..+++-...--
T Consensus 375 g~AaGlA~-----~G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~iP 444 (641)
T PRK12571 375 TFAAGLAA-----AGLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNLP 444 (641)
T ss_pred HHHHHHHH-----CCCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcCC
Confidence 44555554 23345555554 4544 344444 66889999999999766653 22333322 22333332223
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
|+.++.-- |..+++.+++.|++. .++|++|-.
T Consensus 445 nl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 476 (641)
T PRK12571 445 NMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRF 476 (641)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 66666554 888999999888852 369999954
No 228
>PRK05899 transketolase; Reviewed
Probab=77.22 E-value=15 Score=41.42 Aligned_cols=102 Identities=19% Similarity=0.109 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+++|+|+|+. |.-+++++.+ ..|. .-.++.+.+++..++||+++....+++. .+++. | ...+++-...-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHHHHHHHHhC
Confidence 3445555542 3234444433 2443 4567778888889999999998887654 34444 1 22333332222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
-|+.++.-- |..++..+++.|++. .++|++|-.
T Consensus 451 P~~~V~~P~--d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIRPA--DANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEeCC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 355655544 888899999888862 368998866
No 229
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=76.31 E-value=14 Score=41.93 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=51.9
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHH
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya-ist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~ 337 (474)
-+++++++ +.|.+-.+-+-.+.++..++||+|++...|+. ..+++..+ ..+++-...--|+.++.-- |..+++
T Consensus 423 ~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia~lr~iPnl~V~~Ps--d~~E~~ 496 (641)
T PLN02234 423 LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVTFMACLPNMIVMAPS--DEAELF 496 (641)
T ss_pred CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHHHHhcCCCCEEEeeC--CHHHHH
Confidence 34555554 34433333344467788999999999877753 12333222 1222221122366666554 888888
Q ss_pred HHHHHHHHHHhcCCCcEEE
Q 011937 338 TAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 338 ~A~~~A~~~ar~~~gPvLI 356 (474)
.+++.|... .++|++|
T Consensus 497 ~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 497 NMVATAAAI---DDRPSCF 512 (641)
T ss_pred HHHHHHHhC---CCCCEEE
Confidence 888887652 4589988
No 230
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=75.96 E-value=8.8 Score=35.41 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=66.8
Q ss_pred CchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHH-HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 241 ~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn-~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ 319 (474)
-++++++|+.+|-| +..+.+--.|=| ...-+|. +-.++++|++.++.--|+-...-..+.--+.-+-+..+
T Consensus 53 eg~GIcAGa~lAGk---k~ailmQnsGlG-----NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe 124 (172)
T COG4032 53 EGVGICAGAYLAGK---KPAILMQNSGLG-----NSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILE 124 (172)
T ss_pred cceeeehhhhhcCC---CcEEEEeccCcc-----hHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHh
Confidence 34667889888732 112222222322 2222222 23578999999987777632211111112344567788
Q ss_pred HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
..++|.++.. .+.+-+..+..|...+-+.++|+.+-+
T Consensus 125 ~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 125 GLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 8999999988 677878888888888888899977654
No 231
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=75.89 E-value=21 Score=39.18 Aligned_cols=107 Identities=15% Similarity=0.064 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCccee-e-----eccccccCcCHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS-T-----NISEQFRSDGIVV 316 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yais-t-----~~~~~~~~~~ia~ 316 (474)
.-+|-|.|.+. + ..++++..|=|+++ ..-++..|-.-+.|||+|+-.-...-. . .........++.+
T Consensus 52 ~~mAdgyar~t---g-~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~ 124 (539)
T TIGR03393 52 AYAADGYARCK---G-AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYR 124 (539)
T ss_pred HHHhhhhhhhc---C-ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHH
Confidence 34555665543 3 35666777999886 334566777888999999953322100 0 0000000112223
Q ss_pred HHHHcCceEEEEeCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 317 KGRAYGIRSIRVDGND-ALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 317 ~a~ayGi~~i~VDG~D-~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.++..--....++-.+ +..+.+|++.|+. ..+|++|++-.
T Consensus 125 ~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~ 165 (539)
T TIGR03393 125 MAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPV 165 (539)
T ss_pred HhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEecc
Confidence 3333322233333334 4566666666654 57899998754
No 232
>PLN02790 transketolase
Probab=74.24 E-value=16 Score=41.57 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCccee--eeccccccCcCHHHHHHHc---CceEEEEeCCCHHHHHHHHHHHHHHHhc
Q 011937 275 DFHAALNFAAVMEAPVVFICRNNGWAIS--TNISEQFRSDGIVVKGRAY---GIRSIRVDGNDALAVYTAVQAAREMAIS 349 (474)
Q Consensus 275 ~~~EaLn~Aa~~~LPvIfVv~NN~yais--t~~~~~~~~~~ia~~a~ay---Gi~~i~VDG~D~~av~~A~~~A~~~ar~ 349 (474)
...+++.+++..++||+||+...+.+.. +++. ..+.+.+--- ++.+++-- |..++..+++.|++.
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~TH-----q~iedla~lR~iPnl~V~~Pa--D~~E~~~~l~~al~~--- 500 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTH-----QPIEHLASLRAMPNILMLRPA--DGNETAGAYKVAVTN--- 500 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCc-----ccHHHHHHhcCCCCcEEEeCC--CHHHHHHHHHHHHHc---
Confidence 3566788899999999999988776542 3332 2244444333 44555444 888888888888752
Q ss_pred CCCcEEEEE
Q 011937 350 EKRPVLVEA 358 (474)
Q Consensus 350 ~~gPvLIe~ 358 (474)
.++|+.|-.
T Consensus 501 ~~gP~~irl 509 (654)
T PLN02790 501 RKRPTVLAL 509 (654)
T ss_pred CCCCEEEEe
Confidence 468988854
No 233
>PRK12753 transketolase; Reviewed
Probab=74.15 E-value=15 Score=41.73 Aligned_cols=102 Identities=16% Similarity=0.032 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCccee--eeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS--TNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yais--t~~~~~~~~~~ia~~a~a 320 (474)
+.+|.|+|+- +.-.++++.+. .|.+ -.++.+.+++..++||+||....+++.. +++. .+..+++-.-.-
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~TH--q~iedla~lR~i 485 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTH--QPVEQLASLRLT 485 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccc--ccHHHHHHHhcC
Confidence 4455566541 22234444443 6655 6788899999999999999988887653 2322 222333321111
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
-|+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 486 Pn~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 486 PNFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 255666554 788888888888852 468988865
No 234
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=73.23 E-value=22 Score=40.61 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=54.6
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHH
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~ 337 (474)
-+++++++. .|.+=.+-+-++-++..++||+|++...++.. ..++..+ ..+++-...--|+.++.-- |..+++
T Consensus 422 ~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~iPnl~V~~Ps--d~~E~~ 495 (677)
T PLN02582 422 LKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMACLPNMVVMAPS--DEAELF 495 (677)
T ss_pred CeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhcCCCCEEEeeC--CHHHHH
Confidence 455666654 44432344455777889999999998776632 2232221 1233222222366666544 888888
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q 011937 338 TAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 338 ~A~~~A~~~ar~~~gPvLIe~ 358 (474)
.+++.|.+. .++|++|-.
T Consensus 496 ~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 496 HMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred HHHHHHHhC---CCCCEEEEE
Confidence 888888852 358999853
No 235
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=72.89 E-value=20 Score=40.05 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
+.|+|+|+ .| -+++++.+.+ |-+-.+-+-.+-++..++||+|++...++.-..++... ..+++-...--|+
T Consensus 334 ~~AaGlA~----~G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~lr~iPnl 404 (581)
T PRK12315 334 AFASGIAA----NG-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPMISNIPNL 404 (581)
T ss_pred HHHHHHHH----Cc-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHHHhcCCCC
Confidence 34445544 24 4555566654 32222333445578889999999987666544443322 2233322222255
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
.++.- -|..++..+++.|++. .++|+.|-.
T Consensus 405 ~V~~P--~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 405 VYLAP--TTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred EEEec--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 55543 4888888888888752 368999855
No 236
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=72.28 E-value=24 Score=40.48 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=55.1
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeeccccccCcCHHHHHHHcCceEEEEeCCCHHHH
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAV 336 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av 336 (474)
.-+++++++. .|-+=.+-+-.+-++..++||+|++..-|+.. ..++.. ...|++-...--|+.++.-- |..++
T Consensus 446 G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~IPnm~V~aPs--D~~El 519 (701)
T PLN02225 446 GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSSLPNMIAMAPA--DEDEL 519 (701)
T ss_pred CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhcCCCCEEEeeC--CHHHH
Confidence 3466767773 56543344445557888999999998766432 122221 12333322222355555544 88899
Q ss_pred HHHHHHHHHHHhcCCCcEEEEE
Q 011937 337 YTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 337 ~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+.+++.|.. ..++|+.|-.
T Consensus 520 ~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 520 VNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred HHHHHHHHh---cCCCCEEEEe
Confidence 998888774 2468999854
No 237
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=72.17 E-value=32 Score=36.11 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhhhccCCceEEEE-eCCCccccchHHHHHHHHHH--------cCCCEEEEEEcCCcceeeeccccccCcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALNFAAV--------MEAPVVFICRNNGWAISTNISEQFRSDG 313 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~-~GDGa~~eG~~~EaLn~Aa~--------~~LPvIfVv~NN~yaist~~~~~~~~~~ 313 (474)
++.|+|+|++ | .++++++ +.|=. .-.+-+-.|-++. +++|+|++.....++...++..+.
T Consensus 95 vg~AaGlA~~----G-~~Pvv~~~fa~Fl--~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~---- 163 (355)
T PTZ00182 95 AGFAIGAAMN----G-LRPIAEFMFADFI--FPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS---- 163 (355)
T ss_pred HHHHHHHHhC----C-CEEEEEechhhHH--HHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch----
Confidence 4556666653 2 3444443 45432 2233443444554 357888877655666555555331
Q ss_pred HHHHHHHc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 011937 314 IVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 314 ia~~a~ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLI 356 (474)
+.....+. |+.++.-- |..+++.+++.|.+ .++|++|
T Consensus 164 ~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~----~~~P~~i 201 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIR----DPNPVVF 201 (355)
T ss_pred HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEE
Confidence 22333333 66666655 88888998988886 4789977
No 238
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=68.24 E-value=14 Score=41.67 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCccee--eeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCc
Q 011937 276 FHAALNFAAVMEAPVVFICRNNGWAIS--TNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (474)
Q Consensus 276 ~~EaLn~Aa~~~LPvIfVv~NN~yais--t~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gP 353 (474)
..-++.+|+..++|++||..-..++.. +|+. .+.+.++..=.-.++.++|-- |..+...|.+.|+++ .++|
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTH--qPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gP 513 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGP 513 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCC--CcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCC
Confidence 345799999999999999998887654 4443 233444443334588888754 666788888888874 6899
Q ss_pred EEEEE
Q 011937 354 VLVEA 358 (474)
Q Consensus 354 vLIe~ 358 (474)
+.|-.
T Consensus 514 t~Lil 518 (663)
T COG0021 514 TALIL 518 (663)
T ss_pred eEEEE
Confidence 98865
No 239
>PRK12754 transketolase; Reviewed
Probab=68.04 E-value=25 Score=40.17 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
..+|.|+|+- +.-.+.++.| ..|.. -..+++.+++..++||++|....+++....-....+..+++-.-.--|
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn 487 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCC
Confidence 3455666552 2223333433 25554 678889999999999999998888765322111222233332222225
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+.+++-- |..++..+++.|++. .++|+.|-+
T Consensus 488 ~~V~~Pa--D~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 488 MSTWRPC--DQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred cEEecCC--CHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 5566544 888888888888862 468997754
No 240
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=62.80 E-value=58 Score=33.75 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCcceeeeccccccCcCHHHHHHHc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 287 ~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
++|++++.-.-.++...++..+ .+......+ |+.++.-- |+.+.+.+++.|.+ .++|++|-
T Consensus 110 ~~~vv~~~~g~~~~~~G~tHs~----~~ea~~~~iPgl~V~~Ps--d~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 110 TIPIVIRGPGGVGRQLGAEHSQ----RLESYFQSVPGLQIVACS--TPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred cCCEEEEecCCCCCCCCccccc----cHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 6788887432222223333212 232333332 56666554 88888888888875 57899884
No 241
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=61.65 E-value=49 Score=30.27 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcC-CCEEEEEEc-CCcceeeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME-APVVFICRN-NGWAISTNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~-LPvIfVv~N-N~yaist~~~~~~~~~~ia~~a~a 320 (474)
+++|.|+|+. +. .++++++.. +.. ...+.+.+...++ +|+|+.+.. ..++...++.. +..+++-...-
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~~~~i 131 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDEALLRAI 131 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHHHHHhcC
Confidence 3445555554 43 556665543 222 3566677777776 566665543 34444333221 12222222211
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.++.- .|..+++..++.+++ ..++|++|-
T Consensus 132 P~~~v~~P--~~~~e~~~~l~~a~~---~~~~p~~i~ 163 (168)
T smart00861 132 PGLKVVAP--SDPAEAKGLLRAAIR---RDDGPPVIR 163 (168)
T ss_pred CCcEEEec--CCHHHHHHHHHHHHh---CCCCCEEEE
Confidence 24444443 489999999999884 246897764
No 242
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=60.25 E-value=62 Score=33.50 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCCEEEEEEcCCcceeeeccccccCcCHHHHHHHc-CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 287 ~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ay-Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
++|+|+...+..++...+++.+. +....... |+.++.-- |..+++.+++.|.+ .++|++|--.
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r~iP~l~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~~~ 173 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYSHIPGLKVVAPY--FAADCKGLLKTAIR----DPNPVIFLEN 173 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEEEc
Confidence 57888887665555444444221 22333333 55555444 88899999988885 4789998433
No 243
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=56.54 E-value=17 Score=40.64 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHcC--CCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHH
Q 011937 274 GDFHAALNFAAVME--APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (474)
Q Consensus 274 G~~~EaLn~Aa~~~--LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~ 337 (474)
++...+|.=+.+++ +|+++++.|..-.-++ .-.+.+++||++++.||+|.+.+..
T Consensus 402 rDl~~aLED~~RhGqKlPL~VlvDnGsTeEDi---------pA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 402 RDLNFALEDAHRHGQKLPLLVLVDNGSTEEDI---------PAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hhHHHHHHHHHhcCCccceEEEEcCCCccccc---------HHHHHHHhcCCCEEEEcCCCCcchh
Confidence 35556677777765 7999999887432222 2346789999999999999887654
No 244
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=56.50 E-value=46 Score=34.30 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ay 321 (474)
++.|+|.|++- ..+.++-| ++|..+-.||=+..+ +..++||-+|+.+-|++....-... .-+.+.|---
T Consensus 62 vg~AAGLA~~G-----k~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sH---q~~EDiaimR 131 (312)
T COG3958 62 VGTAAGLALAG-----KKPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSH---QALEDIAIMR 131 (312)
T ss_pred HHHHHHHHhcC-----CCceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccc---hhHHHHHHHh
Confidence 56677777752 23444444 567665666655555 4567899999999987543211111 1233444444
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 322 GIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 322 Gi~~i~V-DG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
|+|-..| .--|.....+++..+.+ -+||+.+-.
T Consensus 132 ~lpn~~V~~P~D~v~~~~i~~~~~~----~~GP~Y~Rl 165 (312)
T COG3958 132 GLPNMTVIAPADAVETRAILDQIAD----YKGPVYMRL 165 (312)
T ss_pred cCCCceEEccCcHHHHHHHHHHHHh----cCCCEEEEe
Confidence 5543332 22366666666666665 489998854
No 245
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=55.11 E-value=79 Score=31.97 Aligned_cols=98 Identities=21% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCCchHHHHHHHHHhhhccC-CceEEEEeCCCccc----cchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccC
Q 011937 238 PIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTS----EGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRS 311 (474)
Q Consensus 238 ~lG~~lp~AvGaA~A~k~~~~-d~vvv~~~GDGa~~----eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~ 311 (474)
||+.+|-+|.....=.+.+++ .+++++++-||=.+ .|...|++..|..... ++-+++.|- -... ...
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~------e~~~-~~~ 227 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDT------EGSE-VRL 227 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEec------CCcc-ccc
Confidence 455555555554443444444 46788899999774 3446788888877654 443333221 1111 111
Q ss_pred cCHHHHHHHcCceEEEEeCCCHHHHHHHHHH
Q 011937 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQA 342 (474)
Q Consensus 312 ~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~ 342 (474)
.-..+.|..+|.++++.+...-+.+..+++.
T Consensus 228 g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 228 GLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred cHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 2234688899999999998777777777664
No 246
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=53.60 E-value=56 Score=28.69 Aligned_cols=73 Identities=18% Similarity=0.081 Sum_probs=44.5
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHH
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~ 338 (474)
....|+++.||.-+ +...+.+..+...++++.+|........ ...+...++.-|..++.++ ++..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 56889999999876 4455666666656666555543332211 1245667788899999884 24467776
Q ss_pred HHHH
Q 011937 339 AVQA 342 (474)
Q Consensus 339 A~~~ 342 (474)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 247
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=50.48 E-value=49 Score=28.19 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=29.3
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ 298 (474)
+++.++|++.-.|... ...+.+..|...+.|+|.|+.|..
T Consensus 52 ~~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETR--ELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEeCCCC
Confidence 3566777777777775 467788888888888887776543
No 248
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=49.73 E-value=72 Score=27.82 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=29.0
Q ss_pred cCcCHHHHHHHcCceEEE--EeCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 310 RSDGIVVKGRAYGIRSIR--VDGND-ALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~--VDG~D-~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
....+.+.++++|+.+++ |++.+ -.+-..++.++++ ...+|+|+.|.|
T Consensus 45 ~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 45 SSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp -HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred CHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCC
Confidence 345677889999999887 45433 3444555566665 357899999954
No 249
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=48.11 E-value=57 Score=36.01 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN 296 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~N 296 (474)
-+|.|.|.+ .+.-.++++..|=|+++ ..-++.-|-.-++|||+|.-.
T Consensus 61 ~aAdgyar~---tg~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 61 FLALGLAKA---SKRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHHh---hCCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 345565554 34445677777888886 445677888889999999754
No 250
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=47.84 E-value=2.1e+02 Score=26.19 Aligned_cols=72 Identities=21% Similarity=0.108 Sum_probs=44.0
Q ss_pred ceEEEEeCCCccccch--H----HHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCH
Q 011937 260 ACAVAYTGDGGTSEGD--F----HAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (474)
Q Consensus 260 ~vvv~~~GDGa~~eG~--~----~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~ 333 (474)
+.+|+++.||..+.|. . .+....+...+++++.|.... . .....-+...|+.-|..++.++.-+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~-~--------~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEG-R--------PVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCC-C--------ccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5789999999887543 1 333444456667776553211 0 01112356778888999999986665
Q ss_pred HHHHHHH
Q 011937 334 LAVYTAV 340 (474)
Q Consensus 334 ~av~~A~ 340 (474)
.++..++
T Consensus 170 ~~~~~~~ 176 (178)
T cd01451 170 DAIASAV 176 (178)
T ss_pred HHHHHHh
Confidence 5555544
No 251
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=47.38 E-value=31 Score=29.86 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=28.2
Q ss_pred CChhhhcccccCCCCcCHHHHHHHHHHHHHhCCCCCCC
Q 011937 433 PAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPT 470 (474)
Q Consensus 433 p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~~~p~~~~~ 470 (474)
|....-+..+.....--..++.+++.+..+.+|.+++.
T Consensus 64 ~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~~ 101 (113)
T PF02520_consen 64 SSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVDT 101 (113)
T ss_pred HHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHHH
Confidence 44555566666666666778899999999999988543
No 252
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=47.25 E-value=74 Score=37.17 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHH
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALA 335 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~a 335 (474)
.+++.||+-|+... +..+-.|-.+|..++.|...|...+.-....+..++..-......|+.+|...+++.|.|+..
T Consensus 248 ~e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~ 324 (890)
T COG2205 248 RERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK 324 (890)
T ss_pred cceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH
Confidence 46788888777654 457889999999999985555332221111111122222345578999999999999988643
No 253
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=46.20 E-value=69 Score=29.58 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh---CCCCChhhhcccccC---CCCcCHHHHHHHHHHHHH
Q 011937 389 SPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEK---TEKPAITELFSDVYD---VPPSNLAEQEKQLKEIIQ 462 (474)
Q Consensus 389 DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~---~~~p~~~~lf~dVy~---~~~~~l~~q~~~l~~~l~ 462 (474)
+-|...++++.+.|-+|++|++.+.+-++..+.+..+..+. ...|.+.-+-+-+|. ..+...+=+..+|.+-++
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~ItDkTqvEw~el~~d~~ 97 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSITDKTQVEWAELAQDLE 97 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999887666 333443333333332 233333445677888887
Q ss_pred hCCCCCCC
Q 011937 463 TYPQDYPT 470 (474)
Q Consensus 463 ~~p~~~~~ 470 (474)
.++ .|..
T Consensus 98 h~g-~Y~s 104 (146)
T PF07295_consen 98 HHG-VYHS 104 (146)
T ss_pred hcC-Ceec
Confidence 776 4443
No 254
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.78 E-value=97 Score=29.21 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=35.9
Q ss_pred CHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
-.+--|+|||..++-++|.+-+.+.+.++..+++ -+||..|+..
T Consensus 22 HV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~ 65 (179)
T COG1303 22 HVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFG 65 (179)
T ss_pred hhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEc
Confidence 3556789999999999998777888888887764 7899888764
No 255
>PRK11032 hypothetical protein; Provisional
Probab=45.61 E-value=73 Score=29.90 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhc
Q 011937 391 INRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELF 439 (474)
Q Consensus 391 i~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf 439 (474)
|...++++.+.|-+|++|++.+.+-++..+.+..+..++...+-.+.+|
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~ 78 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVF 78 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 6788999999999999999999999999999998876665443333444
No 256
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=45.16 E-value=37 Score=22.83 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 011937 389 SPINRFRNWVERQGWWSEQEETELRSSIK 417 (474)
Q Consensus 389 DPi~r~r~~L~~~G~~te~e~~~i~~~~~ 417 (474)
+++..++.. .++|++|++|.++.++++.
T Consensus 3 ~~L~~L~~l-~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKEL-YDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 355566554 5779999999998887653
No 257
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=44.31 E-value=2.9e+02 Score=26.60 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=39.4
Q ss_pred hHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCc
Q 011937 275 DFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (474)
Q Consensus 275 ~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gP 353 (474)
..--++.++ ..+++|+++++.++. ...-....+.+|..++.|++. .. .+.+.+.+.+.+..+.
T Consensus 60 N~g~alA~~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~-~~---~~~~~a~~~~~~~~~~ 123 (244)
T cd00640 60 NTGIALAAAAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD-FD---DAIALAKELAEEDPGA 123 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC-HH---HHHHHHHHHHHhCCCC
Confidence 333444444 467899998887653 112335678899999999975 23 3344445544444445
Q ss_pred EEE
Q 011937 354 VLV 356 (474)
Q Consensus 354 vLI 356 (474)
.++
T Consensus 124 ~~~ 126 (244)
T cd00640 124 YYV 126 (244)
T ss_pred Eec
Confidence 554
No 258
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=44.29 E-value=1.3e+02 Score=36.81 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
+..++|++.+ | .++.+++--.++. -++|.|-.++-..+|+|+++.+-.+.-.. ..-.-...|+ -.++.-|
T Consensus 64 ~~av~GA~~a----G--ara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~-~~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT----G--ALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHA-LSIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc----C--CCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCC-CccCCCchHH-HHhhcCC
Confidence 6667776654 2 3344443323332 35787865665689999998875543211 1100011122 3446667
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
|..+.- .++.+++.-.-.|...|.+...|+++-...+|..
T Consensus 134 ~ivl~s--~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~ts 173 (1165)
T TIGR02176 134 FAMLAS--SSVQEVMDLALVAHLATIEARVPFMHFFDGFRTS 173 (1165)
T ss_pred eEEEeC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCceec
Confidence 755554 4888888888888888888889999988777764
No 259
>PRK10490 sensor protein KdpD; Provisional
Probab=44.15 E-value=74 Score=37.51 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=47.0
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHH
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALA 335 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv-~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~a 335 (474)
.+++.||+-|. ..++-.+..+..+|..++.|+..|. +............. .-....+.|+.+|..+..+.|.|+.+
T Consensus 250 ~eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~-~l~~~~~lA~~lGa~~~~~~~~dva~ 326 (895)
T PRK10490 250 RDAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRR-AILSALRLAQELGAETATLSDPAEEK 326 (895)
T ss_pred CCeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 35677777766 5556678888999999999843333 33322111111111 11122368999999999999988753
No 260
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=43.04 E-value=59 Score=24.14 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 011937 391 INRFRNWVERQGWWSEQEETELRSSIKKQLLQA 423 (474)
Q Consensus 391 i~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a 423 (474)
+.-|+..|.++|+ +++++++-.+..|+.+.+.
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 3458999999997 9999999888888887654
No 261
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=41.22 E-value=76 Score=33.44 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=33.1
Q ss_pred ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 309 FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 309 ~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
+...||+..++-.--..++|- .+..|-.+++.|....|.++ ||+||++-
T Consensus 114 fqavdi~~ia~pv~kwavtv~--epalvp~v~qkafhlmrs~rpgpvlidlp 163 (592)
T COG3960 114 FQAVDIEAIAKPVSKWAVTVR--EPALVPRVLQQAFHLMRSGRPGPVLIDLP 163 (592)
T ss_pred hhhhhHHHhhhhhhhhhhhhc--chhhhHHHHHHHHHHHhcCCCCCeEEecc
Confidence 344566666554433334444 67788889999998888874 89999763
No 262
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=40.93 E-value=2.3e+02 Score=26.48 Aligned_cols=71 Identities=8% Similarity=-0.100 Sum_probs=46.4
Q ss_pred CceEEEEeCCCccc-cchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHH
Q 011937 259 DACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVY 337 (474)
Q Consensus 259 d~vvv~~~GDGa~~-eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~ 337 (474)
.+.++++++||.-. .+...+....+...+++|.+|-..+. ..-+.+.+++-|..++.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 34577788888764 33455666667777776555443221 1236678888999999986 777877
Q ss_pred HHHHHH
Q 011937 338 TAVQAA 343 (474)
Q Consensus 338 ~A~~~A 343 (474)
+++.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 776653
No 263
>PRK13685 hypothetical protein; Provisional
Probab=39.74 E-value=2.9e+02 Score=28.28 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=50.0
Q ss_pred ceEEEEeCCCccccch-------HHHHHHHHHHcCCCEEEEEEcCCcceeeecccc-----ccCcCHHHHHHHcCceEEE
Q 011937 260 ACAVAYTGDGGTSEGD-------FHAALNFAAVMEAPVVFICRNNGWAISTNISEQ-----FRSDGIVVKGRAYGIRSIR 327 (474)
Q Consensus 260 ~vvv~~~GDGa~~eG~-------~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~-----~~~~~ia~~a~ayGi~~i~ 327 (474)
..+|+++-||.-+.|. ..++.+.+...+++|-.|-.-+..+. .....+ .....+.+.|+.-|..++.
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~-~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~ 272 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGS-VEINGQRQPVPVDDESLKKIAQLSGGEFYT 272 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCC-cCcCCceeeecCCHHHHHHHHHhcCCEEEE
Confidence 4577899999876542 24567777788888655544332211 000111 1123466788888999999
Q ss_pred EeCCCHHHHHHHHHHHH
Q 011937 328 VDGNDALAVYTAVQAAR 344 (474)
Q Consensus 328 VDG~D~~av~~A~~~A~ 344 (474)
++ |..++.+++++.-
T Consensus 273 ~~--~~~~L~~if~~I~ 287 (326)
T PRK13685 273 AA--SLEELRAVYATLQ 287 (326)
T ss_pred cC--CHHHHHHHHHHHH
Confidence 87 6677776666543
No 264
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=39.60 E-value=29 Score=31.71 Aligned_cols=46 Identities=22% Similarity=0.451 Sum_probs=31.4
Q ss_pred cccCCCCccCcccccccCCCCCCCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHH
Q 011937 82 LDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYS 137 (474)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~ 137 (474)
-.|||.++.|+- ..-|...++|.||++-+.-...+-+.|.+.+.++
T Consensus 103 ~kFp~vkvkyVr----------g~~P~l~llDadgk~kE~lsI~kWntdtl~eff~ 148 (154)
T KOG3384|consen 103 EKFPGVKVKYVR----------GSDPVLKLLDADGKHKESLSIDKWNTDTLEEFFR 148 (154)
T ss_pred hhCCCceEEEec----------CCCCeeEeecCCCCccceeeecccChHHHHHHHH
Confidence 357776655442 2238899999999986544445667788887776
No 265
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=39.33 E-value=2.5e+02 Score=28.01 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=37.2
Q ss_pred chHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhc
Q 011937 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAIS 349 (474)
Q Consensus 274 G~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~ 349 (474)
|..--++..+ ..+++|+++++..+- ...-....+.||..++.+++........+.+.|.+.+.+
T Consensus 62 GN~g~alA~~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~ 126 (291)
T cd01561 62 GNTGIGLAMVAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAE 126 (291)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhh
Confidence 4444455544 468999888885431 112335677899999999976411223334444444433
No 266
>PRK13683 hypothetical protein; Provisional
Probab=37.20 E-value=33 Score=28.85 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=30.2
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 323 i~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
+.+-|=+-.|+.++|+-++.|++ .+.|.|||+.|-+.-+
T Consensus 15 ~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~~~ 53 (87)
T PRK13683 15 ISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKVED 53 (87)
T ss_pred eEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcCC
Confidence 33444445588999999999996 5789999999988654
No 267
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.98 E-value=1.4e+02 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=22.5
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN 297 (474)
+++.+++++---|... .+.+++..|...+.|+|.|..|.
T Consensus 46 ~~~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSGETD--ELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCC
Confidence 3455555555555443 35566666666666666666554
No 268
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=35.72 E-value=1.8e+02 Score=30.29 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=65.0
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe-CCCHHHHH
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD-GNDALAVY 337 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD-G~D~~av~ 337 (474)
+.-+++.+ |+.+..........|+.+++..|++++|-- + .+...+-.-+..-+|+...-|| |.|+. +.
T Consensus 63 g~dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~-------~y~~ngn~Ll~~l~G~~~~~~~~~~d~~-~~ 131 (323)
T COG2515 63 GADTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A-------NYLLNGNLLLSKLMGAEVRAVDAGTDIG-IN 131 (323)
T ss_pred CCcEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c-------ccccccchhhhhhcCceEEEecCCCChh-hc
Confidence 33355555 466555677777788889999999999854 0 1111111223455799999997 57774 33
Q ss_pred HHHHHHHHHH-hcCCCcEEEEEEEecCCC-CCCCCCCCCC-CCHHHHHHHHh
Q 011937 338 TAVQAAREMA-ISEKRPVLVEALTYRVGH-HSTSDDSTKY-RTLDEIEYWKT 386 (474)
Q Consensus 338 ~A~~~A~~~a-r~~~gPvLIe~~TyR~~g-Hs~sDd~~~Y-R~~~E~~~w~~ 386 (474)
.-.+...+.+ +++++|.+|- -+| |..+ .-.| |...|+..|.+
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp-----~GG~~~~g--~lGyv~~a~Ei~~Q~~ 176 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIP-----EGGSSPLG--ALGYVRLALEIAEQAE 176 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEec-----cCCcCccc--cccHHHHHHHHHHHHh
Confidence 3333333333 3467898884 344 3322 2345 56778888764
No 269
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=34.64 E-value=47 Score=26.61 Aligned_cols=47 Identities=17% Similarity=0.401 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHH
Q 011937 413 RSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQ 462 (474)
Q Consensus 413 ~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~ 462 (474)
+++++..|.+|++..++.-.|-+.-+|+-+|...... +++++...|.
T Consensus 16 ~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~---ek~~m~~~l~ 62 (65)
T PF14098_consen 16 KEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDES---EKQEMVNTLE 62 (65)
T ss_pred HHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHH---HHHHHHHHHH
Confidence 3456678888998888888999999999999887764 3344444443
No 270
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=34.11 E-value=1.2e+02 Score=33.74 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=49.8
Q ss_pred CceEEEEeCCCccccchHHHHHH-HHH--HcCCCEEEEEE-cCCcceeee--ccccccCcC---HHHHHHHcCceEEEEe
Q 011937 259 DACAVAYTGDGGTSEGDFHAALN-FAA--VMEAPVVFICR-NNGWAISTN--ISEQFRSDG---IVVKGRAYGIRSIRVD 329 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn-~Aa--~~~LPvIfVv~-NN~yaist~--~~~~~~~~~---ia~~a~ayGi~~i~VD 329 (474)
=.+.|+.||=|+++ ||| .|+ ..++|||+||- =|.-...+. ........| +.+.++..-+.+.-++
T Consensus 67 i~a~VtTfgVGeLS------AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~ 140 (561)
T KOG1184|consen 67 IGACVTTFGVGELS------ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN 140 (561)
T ss_pred ceEEEEEeccchhh------hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc
Confidence 45688888999986 244 333 45799999992 111001100 000011122 2234444444444454
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 330 GNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 330 G~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
|.+...+-+.+|++.|-...+|+-|.+-+-
T Consensus 141 --~~e~A~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 141 --DIEDAPEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred --CHhhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 444444444455555555789999988663
No 271
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.09 E-value=2.9e+02 Score=27.53 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHhhhccCCceEEEEeCCCccccchHHHHHHHHHH-cCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEE
Q 011937 250 AYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV-MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV 328 (474)
Q Consensus 250 A~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~-~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~V 328 (474)
.+|..+...+...+.+.-|-.+-.|.. +-+..+.. -++||+. .| | .++ +.-...+..+|...+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~-~~l~~v~~~v~iPvl~--kd--f--i~~-------~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSL-EYLRAARAAVSLPVLR--KD--F--IID-------PYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCH-HHHHHHHHhcCCCEEe--ee--e--cCC-------HHHHHHHHHcCCCEEEE
Confidence 455555566677778777777655553 44554443 5789883 22 2 111 11235677789999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 329 DGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 329 DG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
++.+... ..+++.+++++.-+.-+++|+.+.
T Consensus 140 i~~~l~~--~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDD--EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCH--HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 8766221 233444444444577888888665
No 272
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=32.17 E-value=1.5e+02 Score=28.90 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=53.2
Q ss_pred ccCCceEEEEeCCCcc--ccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 256 EKKDACAVAYTGDGGT--SEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 256 ~~~d~vvv~~~GDGa~--~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
..|+.+.....=||.. ..|....++.+|..-++ |.-+||+ |-.+.....+.+++.+.|+-+|++.+.+.
T Consensus 121 ~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicE-----i~~~dG~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 121 RRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICE-----IMNDDGTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred CCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEE-----EeCCCccccChHHHHHHHHHcCCcEEEHH
Confidence 4578888888889887 57999999999999999 8888886 21121223345678889999999999976
No 273
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.79 E-value=5.7e+02 Score=26.10 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=74.7
Q ss_pred CCceEEEEeCCCccccchHHH----HHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC--C
Q 011937 258 KDACAVAYTGDGGTSEGDFHA----ALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--N 331 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~E----aLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG--~ 331 (474)
.+.++|.-+..+......... ...+|...+.||.+=. |-+. ..+...+|-..|+.++=+|| .
T Consensus 41 ~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHL-DHg~-----------~~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 41 LHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHL-DHHE-----------KFDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred hCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEEC-CCCC-----------CHHHHHHHHHcCCCEEEeCCCCC
Confidence 346788888888774322211 2234555677855333 2221 12456677778999999998 5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC----CCCCCCCCHHHHHHHHh
Q 011937 332 DALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS----DDSTKYRTLDEIEYWKT 386 (474)
Q Consensus 332 D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s----Dd~~~YR~~~E~~~w~~ 386 (474)
+.++=.+.+++.+++|+..+ +-||+..=+.+|-... ++...|.+++|.+++-+
T Consensus 109 ~~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~ 165 (284)
T PRK09195 109 PFAQNISLVKEVVDFCHRFD--VSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE 165 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcC--CEEEEEEecccCcccCcccccccccCCCHHHHHHHHH
Confidence 66777778888888888754 7788888777653221 12345999999888853
No 274
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=31.79 E-value=3.2e+02 Score=31.15 Aligned_cols=165 Identities=25% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCch
Q 011937 164 TIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243 (474)
Q Consensus 164 ~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~l 243 (474)
..|+||+.-| ||..+=-+++.||| -|..+++..+..-..-. | .+++.. ..|- -..+
T Consensus 16 llGneAi~r~---Ale~gV~~~aGYpG--------tPstei~e~la~~~~~l--~---~vy~e~-s~NE-------kvA~ 71 (640)
T COG4231 16 LLGNEAIARG---ALEAGVGVAAGYPG--------TPSTELIETLAKAKKIL--G---DVYFEW-SLNE-------KVAL 71 (640)
T ss_pred hccHHHHHHH---HHhcCceEEeccCC--------CCcHHHHHHHHHhhhhc--C---cEEEEe-cccH-------HHHH
Confidence 5799998654 45555446677875 56777777765422100 1 122111 1111 1123
Q ss_pred HHHHHHHHHhhhccCCceEEEEe-CCCccccchHHHHHHHHHHcCCCEEEEEEcC-CcceeeeccccccCcCHHHHHHHc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~-GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~~~~~~~ia~~a~ay 321 (474)
-.|.|++++ +- ..++++ +=|-=-.+|..-.+++++..+ .+|+|+-+. +..-|+ .+|. ---.++..
T Consensus 72 e~a~GA~~~----G~--ral~~mKhVGlNvAsDpl~s~ay~Gv~G-Glviv~aDDpg~~SSq--neqd----sr~y~~~a 138 (640)
T COG4231 72 ETAAGASYA----GV--RALVTMKHVGLNVASDPLMSLAYAGVTG-GLVIVVADDPGMHSSQ--NEQD----SRAYGKFA 138 (640)
T ss_pred HHHHHhhhc----Cc--eeeEEecccccccchhhhhhhhhcCccc-cEEEEEccCCCccccc--chhH----hHHHHHhc
Confidence 456666554 21 122221 111111223333344444222 355555443 332222 2221 11234455
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
.+|++.=- |+.++++.++.|.+.-+..+-|+++-+.| |.. |+.+
T Consensus 139 ~iPvLeP~--d~Qea~d~~~~afelSe~~~~pVilr~tt-r~~-h~~~ 182 (640)
T COG4231 139 LIPVLEPS--DPQEAYDYVKYAFELSEKSGLPVILRTTT-RVS-HSRG 182 (640)
T ss_pred CceeecCC--ChHHHHHHHHHHHHHHHHhCCCEEEEEEe-eee-ccce
Confidence 67777544 99999999999999999999999999877 543 4443
No 275
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=31.40 E-value=53 Score=26.49 Aligned_cols=47 Identities=19% Similarity=0.423 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHH
Q 011937 413 RSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQ 462 (474)
Q Consensus 413 ~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~ 462 (474)
+++++..|.+|++..++.-.|-+.-+|+-+|...... |..++.+.|.
T Consensus 18 ~eel~~~I~daIqsgEEk~LPGLGVlFE~~W~~~~~~---ek~~m~~~l~ 64 (68)
T PRK02955 18 KEELEGTIVDAIQSGEEKMLPGLGVLFEVIWKNADEN---EKDEMLETLE 64 (68)
T ss_pred HHHHHHHHHHHHhccchhcCCcchhHHHHHHHhcCHH---HHHHHHHHHH
Confidence 3455677888888888888899999999999876653 4444444443
No 276
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=31.38 E-value=7.1e+02 Score=27.30 Aligned_cols=152 Identities=18% Similarity=0.083 Sum_probs=73.5
Q ss_pred HHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCcc
Q 011937 192 GVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (474)
Q Consensus 192 g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~ 271 (474)
+.++..|++++++..-+-.-. +..||.-..+.+.+ .+.-...+ -|-|+=.++..-..-.+..++|+||=|+=
T Consensus 299 a~~~~lG~~~e~i~~~l~~~~--~v~GRmE~v~~~~~--~v~VDyAH----nPd~le~~L~~~~~~~~g~li~VfG~gGD 370 (475)
T COG0769 299 AAALALGVDLEDILAGLETLK--PVPGRMELVNIGGK--LVIVDYAH----NPDGLEKALRAVRLHAAGRLIVVFGCGGD 370 (475)
T ss_pred HHHHHcCCCHHHHHHHHHhcC--CCCCcceEecCCCC--eEEEEecc----ChHHHHHHHHHHHhhcCCcEEEEECccCC
Confidence 344558999999887664322 23577766666532 22222222 33333333332211122337777765544
Q ss_pred c-cchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcC
Q 011937 272 S-EGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISE 350 (474)
Q Consensus 272 ~-eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~ 350 (474)
. .+-.+ -|...+....++++|..+|-- .+. +..-+.+...++.-+.. +. -...-.+|++.|++.+.
T Consensus 371 rD~~kr~-~mg~ia~~~ad~vivt~dnpR------~ed-p~~i~~~i~~g~~~~~~-~~--~~~dr~~AI~~ai~~a~-- 437 (475)
T COG0769 371 RDKSKRP-DMGAIAEQLADIVIVTSDNPR------SED-PAVILADILAGIEAPEK-YE--IIEDREEAIRKALDLAK-- 437 (475)
T ss_pred CCccccc-chHHHHHhcCCcEEEcCCCCC------CcC-HHHHHHHHHhccCCccc-ee--cchhHHHHHHHHHHhhc--
Confidence 2 22222 244444444578888877632 111 00112223332222210 11 23456777888887765
Q ss_pred CCcEEEEEEEecCCCCCC
Q 011937 351 KRPVLVEALTYRVGHHST 368 (474)
Q Consensus 351 ~gPvLIe~~TyR~~gHs~ 368 (474)
.+++++.+ ..||.+
T Consensus 438 ~~D~vlia----gkGhe~ 451 (475)
T COG0769 438 EGDVVLIA----GKGHET 451 (475)
T ss_pred cCCEEEEe----eccchh
Confidence 45666654 566643
No 277
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=30.84 E-value=54 Score=26.20 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHH
Q 011937 413 RSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQ 462 (474)
Q Consensus 413 ~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~ 462 (474)
+++++..|.+|++..++.-.|-+.-+|+-.|..... +|..+|.+.|.
T Consensus 15 ~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~---~ek~~m~~~l~ 61 (65)
T TIGR03092 15 KEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANE---QEKDEMLETLE 61 (65)
T ss_pred HHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCH---HHHHHHHHHHH
Confidence 345567888899888888889999999999987665 34444554443
No 278
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.28 E-value=4.9e+02 Score=26.55 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=72.8
Q ss_pred CCceEEEEeCCCccccchHHH----HHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC--C
Q 011937 258 KDACAVAYTGDGGTSEGDFHA----ALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--N 331 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~E----aLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG--~ 331 (474)
.+.++|.-+..|......... ...+|...+.||.+=.+ -+. ..+...+|-..|+.++=+|| -
T Consensus 39 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD-Hg~-----------~~e~i~~ai~~GFtSVM~DgS~l 106 (282)
T TIGR01858 39 MRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLD-HHE-----------SLDDIRQKVHAGVRSAMIDGSHF 106 (282)
T ss_pred hCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC-CCC-----------CHHHHHHHHHcCCCEEeecCCCC
Confidence 345788888888774322222 12244456678654332 111 12456777778999999998 4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC----CCCCCCCCHHHHHHHH
Q 011937 332 DALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS----DDSTKYRTLDEIEYWK 385 (474)
Q Consensus 332 D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s----Dd~~~YR~~~E~~~w~ 385 (474)
+.++=.+.+++++++|+..+ +-||+..=..+|-... ++...|.+++|.+++-
T Consensus 107 p~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv 162 (282)
T TIGR01858 107 PFAQNVKLVKEVVDFCHRQD--CSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFV 162 (282)
T ss_pred CHHHHHHHHHHHHHHHHHcC--CeEEEEEEecCCccCCCccccchhccCCHHHHHHHH
Confidence 66777777888888888765 6778877777653321 1224588999888775
No 279
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=29.90 E-value=6.2e+02 Score=27.22 Aligned_cols=74 Identities=22% Similarity=0.196 Sum_probs=39.4
Q ss_pred HHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 246 AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
|+..++..+..+.+. +++-.|.| ..--++.++ +.+++++++++-...+..+ ..-....+.||..
T Consensus 105 A~~~~~~a~~~G~~~-~vtetssG-----N~G~alA~aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~ 169 (419)
T TIGR01415 105 AIAQAYYAKIEGAKR-LVTETGAG-----QWGSALSLAGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAE 169 (419)
T ss_pred HHHHHHHHHHcCCCe-EEEecCch-----HHHHHHHHHHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCE
Confidence 444444444445443 33333433 233445554 5688997777654322111 1112457889999
Q ss_pred EEEEeCCCHH
Q 011937 325 SIRVDGNDAL 334 (474)
Q Consensus 325 ~i~VDG~D~~ 334 (474)
++.+++..-+
T Consensus 170 Vi~~~~~~~~ 179 (419)
T TIGR01415 170 VIPSPSEFTE 179 (419)
T ss_pred EEEECCchhh
Confidence 9999975433
No 280
>PRK06381 threonine synthase; Validated
Probab=29.35 E-value=4.7e+02 Score=26.52 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=38.2
Q ss_pred hHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCc
Q 011937 275 DFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (474)
Q Consensus 275 ~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gP 353 (474)
..--++.++ +..++|+++|+..+- ...-.+..+.||..++.|++. . ..+...|.+.++. ++.
T Consensus 73 N~g~alA~~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~-~---~~~~~~a~~~~~~-~~~ 135 (319)
T PRK06381 73 NYGASIAYFARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK-Y---EEAVERSRKFAKE-NGI 135 (319)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC-H---HHHHHHHHHHHHH-cCc
Confidence 333445544 568899888886431 112335788999999999974 2 2344455555444 344
Q ss_pred EE
Q 011937 354 VL 355 (474)
Q Consensus 354 vL 355 (474)
.+
T Consensus 136 ~~ 137 (319)
T PRK06381 136 YD 137 (319)
T ss_pred Ee
Confidence 43
No 281
>PRK09225 threonine synthase; Validated
Probab=28.78 E-value=2e+02 Score=31.37 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.1
Q ss_pred eEEeCCCCCcccCCCCCCCCHHHHHHH
Q 011937 109 FRVLDDNGELIKGSDFQQVSKEVAVKM 135 (474)
Q Consensus 109 ~rv~~~~g~~~~~~~~~~l~~e~l~~l 135 (474)
++=+.+||-+.-+...|+++.+++.++
T Consensus 20 l~Gla~DGGLyvP~~~P~l~~~~~~~~ 46 (462)
T PRK09225 20 LQGLAPDGGLYVPEELPKLSAEEIDAL 46 (462)
T ss_pred hcCCCCCCceEeCcccCCCCHHHHHHH
Confidence 455678999877888899998887554
No 282
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=28.26 E-value=88 Score=30.22 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=57.1
Q ss_pred CCCchHHHHHHHHHhhhc----------cCCceEEEEeCCCcc--ccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeec
Q 011937 239 IATQLPQAVGVAYSLKME----------KKDACAVAYTGDGGT--SEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNI 305 (474)
Q Consensus 239 lG~~lp~AvGaA~A~k~~----------~~d~vvv~~~GDGa~--~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~ 305 (474)
.+++++..-=+.-..++. .|+.+..+...+|.. ..|....++.++..-++ |+-++|+ +-...
T Consensus 90 ~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~e-----il~~d 164 (194)
T PF00926_consen 90 TTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICE-----ILDDD 164 (194)
T ss_dssp -SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEE-----BBETT
T ss_pred CCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEE-----EeCCC
Confidence 667776654443333333 356677778888887 46999999999999999 8888885 11111
Q ss_pred cccccCcCHHHHHHHcCceEEEEe
Q 011937 306 SEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 306 ~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
....+.+++.+.|+.+|++.+.|+
T Consensus 165 G~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 165 GDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp SSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 123344677889999999999876
No 283
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=28.03 E-value=3.5e+02 Score=27.02 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 314 ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
+...++.+|+++......+.++..+.++++++ .+.||+|-+.+|=
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~~ 99 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMYY 99 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEecccc
Confidence 44667779999998888899999999999987 5789999887643
No 284
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=27.86 E-value=4.9e+02 Score=29.42 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=56.3
Q ss_pred CchHHHHHHHHHhhh----c-cCCceEEEEeCCCccccch---------HHHHHHHHHH---cCCCEEEEEEcCCcceee
Q 011937 241 TQLPQAVGVAYSLKM----E-KKDACAVAYTGDGGTSEGD---------FHAALNFAAV---MEAPVVFICRNNGWAIST 303 (474)
Q Consensus 241 ~~lp~AvGaA~A~k~----~-~~d~vvv~~~GDGa~~eG~---------~~EaLn~Aa~---~~LPvIfVv~NN~yaist 303 (474)
.+-|.+-|...|.+. . +....+|+++-||-.+.|. ..+++..|.. .++++++|-.-+.
T Consensus 474 GgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~----- 548 (584)
T PRK13406 474 GGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR----- 548 (584)
T ss_pred CCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC-----
Confidence 445555555555432 1 2236788889999987542 2445555443 4456555432111
Q ss_pred eccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHH
Q 011937 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (474)
Q Consensus 304 ~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A 343 (474)
......+.|+..|..++.++--+...|..+++.+
T Consensus 549 ------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123567889999999999977888887777655
No 285
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.06 E-value=1.1e+02 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=28.8
Q ss_pred ccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCc
Q 011937 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299 (474)
Q Consensus 256 ~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~y 299 (474)
+..|- +|+++.+--.+.|..+| +-+|...+.||+.++.+...
T Consensus 60 ~~~D~-via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 60 RECDI-VIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHSSE-EEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred HHCCE-EEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 34444 55555443466787777 89999999999999987654
No 286
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.28 E-value=6.7e+02 Score=25.57 Aligned_cols=115 Identities=21% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCceEEEEeCCCccc-cc-h-HHH-HHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC--C
Q 011937 258 KDACAVAYTGDGGTS-EG-D-FHA-ALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--N 331 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~-eG-~-~~E-aLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG--~ 331 (474)
.+.++|.-+..+... .| . +.. ...+|...+.||.+=.+ -+. ..+...+|...|+.++=+|| -
T Consensus 41 ~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLD-H~~-----------~~e~i~~ai~~GftSVMiDgS~l 108 (284)
T PRK12737 41 LRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLD-HHE-----------DLDDIKKKVRAGIRSVMIDGSHL 108 (284)
T ss_pred hCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC-CCC-----------CHHHHHHHHHcCCCeEEecCCCC
Confidence 345778788887763 22 2 112 22344556677554332 111 12355777788999999998 4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC----CCCCCCCCHHHHHHHHh
Q 011937 332 DALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS----DDSTKYRTLDEIEYWKT 386 (474)
Q Consensus 332 D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s----Dd~~~YR~~~E~~~w~~ 386 (474)
+.++=.+.+++.+++|+..+ +-||+..=+.+|.... ++...|.+++|..++-+
T Consensus 109 p~eeNi~~T~~vv~~Ah~~g--vsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~ 165 (284)
T PRK12737 109 SFEENIAIVKEVVEFCHRYD--ASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVE 165 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcC--CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHH
Confidence 56666777788888887764 7788888888765432 12245999999888853
No 287
>PLN03013 cysteine synthase
Probab=26.21 E-value=1.9e+02 Score=31.31 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=8.0
Q ss_pred HHHHHcCceEEEEeC
Q 011937 316 VKGRAYGIRSIRVDG 330 (474)
Q Consensus 316 ~~a~ayGi~~i~VDG 330 (474)
+..++||..++.|++
T Consensus 215 ~~ira~GAeVi~v~~ 229 (429)
T PLN03013 215 VLLKAFGAELVLTDP 229 (429)
T ss_pred HHHHHcCCEEEEECC
Confidence 344555666555554
No 288
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.97 E-value=1.1e+02 Score=28.51 Aligned_cols=84 Identities=12% Similarity=0.155 Sum_probs=50.8
Q ss_pred eEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccc----c----ccCcCHHHHHHHcCceEEEEeCCC
Q 011937 261 CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISE----Q----FRSDGIVVKGRAYGIRSIRVDGND 332 (474)
Q Consensus 261 vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~----~----~~~~~ia~~a~ayGi~~i~VDG~D 332 (474)
.-++++|-.....+ .-.+...+++++.+.+.+|..-+..-... . ..+....+.|+.+|++++.+. ..
T Consensus 78 ~~Iavv~~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~-sg 152 (176)
T PF06506_consen 78 PKIAVVGYPNIIPG----LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIE-SG 152 (176)
T ss_dssp SEEEEEEESS-SCC----HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS---
T ss_pred CcEEEEecccccHH----HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEE-ec
Confidence 45555555555433 23455667888888888775432211110 0 112235678999999999997 24
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011937 333 ALAVYTAVQAAREMAIS 349 (474)
Q Consensus 333 ~~av~~A~~~A~~~ar~ 349 (474)
.++++.|+.+|+..++.
T Consensus 153 ~esi~~Al~eA~~i~~~ 169 (176)
T PF06506_consen 153 EESIRRALEEALRIARA 169 (176)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999876543
No 289
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.60 E-value=6.1e+02 Score=25.92 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=68.7
Q ss_pred CceEEEEeCCCccccch---HH-HHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC--CC
Q 011937 259 DACAVAYTGDGGTSEGD---FH-AALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--ND 332 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~---~~-EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG--~D 332 (474)
+.++|.-+..+...... +. -...+|...+.||.+=.+ -+. ..+...+|-..|+.++-+|| .+
T Consensus 42 ~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLD-H~~-----------~~e~i~~Ai~~GftSVM~DgS~l~ 109 (283)
T PRK07998 42 GLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLD-HGK-----------TFEDVKQAVRAGFTSVMIDGAALP 109 (283)
T ss_pred CCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECc-CCC-----------CHHHHHHHHHcCCCEEEEeCCCCC
Confidence 45666666666653211 11 122345567778664443 110 12344567777999999998 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC--CCCCCCCCHHHHHHHH
Q 011937 333 ALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS--DDSTKYRTLDEIEYWK 385 (474)
Q Consensus 333 ~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s--Dd~~~YR~~~E~~~w~ 385 (474)
.++=.+-+++.+++|...+-+ ||+..-+.+|-... ++...|.+++|..++-
T Consensus 110 ~eeNi~~T~~vve~Ah~~gv~--VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 110 FEENIAFTKEAVDFAKSYGVP--VEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCE--EEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 555666678888888876644 77777677654322 1134588999988775
No 290
>PRK08329 threonine synthase; Validated
Probab=25.37 E-value=2.5e+02 Score=29.08 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=32.2
Q ss_pred HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCC
Q 011937 282 FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK 351 (474)
Q Consensus 282 ~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~ 351 (474)
.|+..++++++++-.+- ...-....+.||..++.|+|.. .+ +.+.|.+.+.+.+
T Consensus 122 ~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~v~~v~~~~-~~---~~~~a~~l~~~~~ 175 (347)
T PRK08329 122 YSLSEGIKVHVFVSYNA------------SKEKISLLSRLGAELHFVEGDR-ME---VHEEAVKFSKRNN 175 (347)
T ss_pred HHHHcCCcEEEEECCCC------------hHHHHHHHHHcCCEEEEECCCH-HH---HHHHHHHHHHhcC
Confidence 45568999888874431 1112245678999999999853 32 3344444444433
No 291
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=24.88 E-value=4.4e+02 Score=31.56 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhhccCCce--EEEEeCCCccc-cchHHHHHHH-HHHcCC--CEEEEEEcCCcceeeeccccccCcCHHH
Q 011937 243 LPQAVGVAYSLKMEKKDAC--AVAYTGDGGTS-EGDFHAALNF-AAVMEA--PVVFICRNNGWAISTNISEQFRSDGIVV 316 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~v--vv~~~GDGa~~-eG~~~EaLn~-Aa~~~L--PvIfVv~NN~yaist~~~~~~~~~~ia~ 316 (474)
++.++|+|+ .+++.+ +=+-|||=+.. |-.+-+=+|. ++.|+. ++|+.+- .||....+...+-+...+..
T Consensus 660 ~G~~~G~a~----~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p-~G~~g~g~~hsS~~~E~~lq 734 (929)
T TIGR00239 660 LGFEYGYAT----TSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLP-HGYEGQGPEHSSGRLERFLQ 734 (929)
T ss_pred HHHHHhHHh----cCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEec-CcCCCCCchhhccCHHHHHH
Confidence 444555554 476665 44566665542 1224454666 466653 7665554 44655554333222233333
Q ss_pred HHHHcCceEEEEeCCCHHHHHHHHH-HHHHHHhcCCCcEEEEE
Q 011937 317 KGRAYGIRSIRVDGNDALAVYTAVQ-AAREMAISEKRPVLVEA 358 (474)
Q Consensus 317 ~a~ayGi~~i~VDG~D~~av~~A~~-~A~~~ar~~~gPvLIe~ 358 (474)
.+.--||.++... .+.+.+..++ .|+. ..++|+++--
T Consensus 735 l~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~~ 772 (929)
T TIGR00239 735 LAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVMS 772 (929)
T ss_pred HhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEec
Confidence 3333477777666 8888888888 4663 3478988743
No 292
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=24.82 E-value=2e+02 Score=27.98 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=49.5
Q ss_pred cCCceEEEEeCCCcc--ccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 257 KKDACAVAYTGDGGT--SEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~--~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
.|+.+.....-+|.. ..|....++.++..-++ |+-++|+= -.......+.+++.+.|+.+|++.+.++
T Consensus 123 ~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEi-----l~~dG~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 123 RPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEM-----MNDDGTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEE-----eCCCCCccCHHHHHHHHHHcCCcEEEHH
Confidence 467777777777766 58888889999999998 88888851 1111123345678889999999998765
No 293
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=24.74 E-value=1e+02 Score=24.98 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.0
Q ss_pred CCCCeeEEeCCCCCcccC
Q 011937 104 KRVPCFRVLDDNGELIKG 121 (474)
Q Consensus 104 ~~~p~~rv~~~~g~~~~~ 121 (474)
..+||.||++.+|.+...
T Consensus 47 ~~vP~HRVv~~~g~~~~~ 64 (79)
T cd06445 47 ILIPCHRVVRSDGGLGGY 64 (79)
T ss_pred CCCCceeEECCCCCcCCC
Confidence 468999999999988643
No 294
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.69 E-value=7.6e+02 Score=26.95 Aligned_cols=83 Identities=27% Similarity=0.382 Sum_probs=56.0
Q ss_pred CHHHHHHHcCceEEEE-eC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCH
Q 011937 313 GIVVKGRAYGIRSIRV-DG-NDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSP 390 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~V-DG-~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DP 390 (474)
.+.+++.-.|+.++|| |. ||+.-+..|++.+.+. |--..-+++|-...- .-++.|.+
T Consensus 102 ~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~-----G~h~q~~i~YT~sPv------------Ht~e~yv~---- 160 (472)
T COG5016 102 KFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKH-----GAHVQGTISYTTSPV------------HTLEYYVE---- 160 (472)
T ss_pred HHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhc-----CceeEEEEEeccCCc------------ccHHHHHH----
Confidence 3556677789999998 54 8999998888888763 336666667755431 12344432
Q ss_pred HHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHH
Q 011937 391 INRFRNWVER-----------QGWWSEQEETELRSSIKKQ 419 (474)
Q Consensus 391 i~r~r~~L~~-----------~G~~te~e~~~i~~~~~~~ 419 (474)
+.+.|.+ .|++|..+.-++.+.++++
T Consensus 161 ---~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~ 197 (472)
T COG5016 161 ---LAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKE 197 (472)
T ss_pred ---HHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHh
Confidence 2333333 4789999999999998885
No 295
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.24 E-value=44 Score=27.55 Aligned_cols=17 Identities=47% Similarity=0.833 Sum_probs=14.8
Q ss_pred CCCCeeEEeCCCCCccc
Q 011937 104 KRVPCFRVLDDNGELIK 120 (474)
Q Consensus 104 ~~~p~~rv~~~~g~~~~ 120 (474)
..+||.||+..+|++-.
T Consensus 49 ~~iPcHRVv~s~G~l~~ 65 (80)
T TIGR00589 49 ILVPCHRVIGKNGSLTG 65 (80)
T ss_pred CCCCCceeECCCCCCCC
Confidence 46899999999999854
No 296
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=24.00 E-value=7.9e+02 Score=25.15 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=72.3
Q ss_pred CceEEEEeCCCccccchHHH----HHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC--CC
Q 011937 259 DACAVAYTGDGGTSEGDFHA----ALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--ND 332 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~E----aLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG--~D 332 (474)
+.++|.-+..|.+....... ...+|...+.||.+=.+- +. ..+...+|-..|+.++=+|| .+
T Consensus 42 ~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH-g~-----------~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 42 RSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDH-HE-----------SLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred CCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC-CC-----------CHHHHHHHHHcCCCeEeecCCCCC
Confidence 45677778887774322222 222344566787644321 11 22455677778999999998 56
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC----CCCCCCCCCHHHHHHHH
Q 011937 333 ALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST----SDDSTKYRTLDEIEYWK 385 (474)
Q Consensus 333 ~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~----sDd~~~YR~~~E~~~w~ 385 (474)
.++=.+.+++.+++|+..+ +-||+..=+.+|-.. .++...|.+++|..++-
T Consensus 110 ~eeNi~~T~evv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv 164 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQD--CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV 164 (286)
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH
Confidence 6777777888888888764 678888877765321 11124588999988875
No 297
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.87 E-value=2e+02 Score=25.13 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=24.3
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN 297 (474)
++.++|.+.++|...+ ...+.+..+...+.|+|.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4566777777775432 24556666666777777776554
No 298
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=23.57 E-value=4.7e+02 Score=31.18 Aligned_cols=120 Identities=12% Similarity=-0.056 Sum_probs=69.7
Q ss_pred cccCCCCCchH---HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeeccccc
Q 011937 234 TISSPIATQLP---QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNISEQF 309 (474)
Q Consensus 234 ~~sg~lG~~lp---~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~y-aist~~~~~~ 309 (474)
...|+-.+++- +|+|.|++.. +..-++++ +.=..|..+-..+-+..++..++++++|.-.-|. .....-..
T Consensus 563 ie~GIAEqnmv~~~iAAGlA~a~~--G~g~iPf~-~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~t-- 637 (889)
T TIGR03186 563 LEEGISEAGAISSWIAAATSYSVH--DLPMLPFY-IYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQ-- 637 (889)
T ss_pred EEechhhHHHHHHHHHHHHhhhhc--CCCceEEE-EehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccc--
Confidence 34455555544 4777777632 32223332 2234454445667888888888999999987776 33321111
Q ss_pred cCcCHHHHHHHcCceEEEE-eCCCHHHHHHHHHHHHHHHhcC--CCcEEEEEE
Q 011937 310 RSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISE--KRPVLVEAL 359 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~V-DG~D~~av~~A~~~A~~~ar~~--~gPvLIe~~ 359 (474)
-.++.+.+-.-.+|.+.| +=-|..++..+++.+++++-.. ++|+.|-+.
T Consensus 638 -Hq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~ 689 (889)
T TIGR03186 638 -HQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVT 689 (889)
T ss_pred -ccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 223444444445554443 4458888888898888744443 478887553
No 299
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=23.26 E-value=5.2e+02 Score=25.01 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=34.4
Q ss_pred eEEEEeCCCccccchHHHHHHHHHHcC-CC--EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC
Q 011937 261 CAVAYTGDGGTSEGDFHAALNFAAVME-AP--VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (474)
Q Consensus 261 vvv~~~GDGa~~eG~~~EaLn~Aa~~~-LP--vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG 330 (474)
++|.+-|.|+- .+++--+...+ ++ +++|+-||..+ ...++|+.+|++++..+-
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEecc
Confidence 56777777654 45555554433 44 77788777521 235688889999988754
No 300
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.17 E-value=1.9e+02 Score=24.94 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=31.5
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ 298 (474)
+++.+++++..-|... +..+++..|...+.|+|.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 4567788888888776 577889999999999888886543
No 301
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=23.11 E-value=3.7e+02 Score=27.56 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcc-c--ccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCC
Q 011937 125 QQVSKEVAVKMYSHMVTLQVMDSVLY-EAQRQGRF-S--FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (474)
Q Consensus 125 ~~l~~e~l~~ly~~M~~~R~~d~~l~-~~~rqGri-~--f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~ 200 (474)
.+++++++..++.....++..-..-. ...-+||. . |+-+|.=--..--..+..|+ ++.++-.-++. ..+.+|-+
T Consensus 7 ~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~~pSTRTR~SFe~A~~~LG-g~~i~l~~~~~-s~~~kgEs 84 (301)
T TIGR00670 7 SDLSREEIELLLQTARELEQVLNGKEKLELLKGKILANLFFEPSTRTRLSFETAMKRLG-GDVVNFSDSET-SSVAKGET 84 (301)
T ss_pred hhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEEeccCCchhHhHHHHHHHHcC-CcEEEcCCCCc-ccCCCCcC
Confidence 46899999999888766654211100 00124653 2 54333321111111223344 35555433221 24567777
Q ss_pred HHHHHHHHhcCCCCC-CCCCC-CccccCCCCCCcccccC--CCCCchHHHHHHHHHhhhc-c-CCceEEEEeCCCccccc
Q 011937 201 LQQFANQVFANKADD-GKGRQ-MPIHYGSKKLNYITISS--PIATQLPQAVGVAYSLKME-K-KDACAVAYTGDGGTSEG 274 (474)
Q Consensus 201 ~~~~~~el~g~~~~~-~~Gr~-~~~H~~~~~~~~~~~sg--~lG~~lp~AvGaA~A~k~~-~-~d~vvv~~~GDGa~~eG 274 (474)
+++...-+-.-.+.. -+... .-..-..+...+..+++ ......-+|+.=.+..+-. + -+.+.|+++||+.-+ -
T Consensus 85 i~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~-~ 163 (301)
T TIGR00670 85 LADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYG-R 163 (301)
T ss_pred HHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCC-c
Confidence 777665332211100 00000 00000000011111121 1335667777766665432 2 366899999998643 2
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 275 ~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
..+.-+..++.++..|.+++- ..-. ..+++.+.++.+|..+...+
T Consensus 164 v~~Sl~~~~a~~g~~v~~~~P---------~~~~-~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 164 TVHSLAEALTRFGVEVYLISP---------EELR-MPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HHHHHHHHHHHcCCEEEEECC---------cccc-CCHHHHHHHHHcCCEEEEEC
Confidence 566667778888887777662 2111 12345567777787765555
No 302
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.99 E-value=4e+02 Score=27.19 Aligned_cols=54 Identities=11% Similarity=-0.036 Sum_probs=38.1
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHcC-C--CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVME-A--PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~-L--PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG 330 (474)
+.+++|..-|.|+. .++|-.+...+ + -++.|+-||. +..++|+.+|+|++.++-
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 44678888887655 45666666543 4 4888888773 345889999999998763
No 303
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=22.93 E-value=1.2e+02 Score=21.05 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 011937 389 SPINRFRNWVERQGWWSEQEETELRSSIKKQLLQA 423 (474)
Q Consensus 389 DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a 423 (474)
||+..|=+.+-..-++|.+|+.++-.++++-...|
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~a 36 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEAA 36 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHhc
Confidence 67888888888889999999999988887765543
No 304
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=22.89 E-value=1.9e+02 Score=29.53 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 273 EGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 273 eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
.-++.|-...|...+.+|++.+..+..+...+...+. +.+.++.+..|+.+++||
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~--~~~f~~~~~~Gv~GvKid 126 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL--DEAFKLYAKWGVKGVKID 126 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH--HHHHHHHHHCTEEEEEEE
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH--HHHHHHHHHcCCCEEeeC
Confidence 4467888899999999999999888755444445552 667788899999999998
No 305
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=22.75 E-value=7.2e+02 Score=24.26 Aligned_cols=96 Identities=18% Similarity=0.091 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHhhhcc---CCceEEEEeCCCccccc-hHH-HHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHH
Q 011937 241 TQLPQAVGVAYSLKMEK---KDACAVAYTGDGGTSEG-DFH-AALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIV 315 (474)
Q Consensus 241 ~~lp~AvGaA~A~k~~~---~d~vvv~~~GDGa~~eG-~~~-EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia 315 (474)
+.++.|++.+..+--.. -.+.||-+-|||--++| .-. .+-..+...++ + =|+..|....... ..++.
T Consensus 95 Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi--t----INgL~I~~~~~~~--~~~L~ 166 (205)
T PF06707_consen 95 TAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI--T----INGLAILDDDPFG--GADLD 166 (205)
T ss_pred chHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCe--E----EeeeEecCCCCCc--cccHH
Confidence 55677777666543333 34789999999999999 433 23333333333 1 1455554332211 11344
Q ss_pred HHHHHc--CceE-EEEeCCCHHHHHHHHHHHH
Q 011937 316 VKGRAY--GIRS-IRVDGNDALAVYTAVQAAR 344 (474)
Q Consensus 316 ~~a~ay--Gi~~-i~VDG~D~~av~~A~~~A~ 344 (474)
...+.. |-|+ +.+-.++..+..+|+++-+
T Consensus 167 ~yy~~~VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 167 AYYRRCVIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred HHHhhhcccCCCceEEEcCCHHHHHHHHHHHH
Confidence 433322 3333 3333447778777776544
No 306
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.74 E-value=4.2e+02 Score=29.10 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=63.6
Q ss_pred cCCCEEEEEEcCCcceeeeccccccCcCHHHH-----HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 286 MEAPVVFICRNNGWAISTNISEQFRSDGIVVK-----GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 286 ~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~-----a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.++|+++|=.+.||...|. |++.. -+-..|..+.||--.-......++.|+.. + . ++-..
T Consensus 365 ~~IPLtvVKSDGGftYdts--------DlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~----g--w-ld~~~ 429 (656)
T KOG4426|consen 365 CDIPLTVVKSDGGFTYDTS--------DLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKA----G--W-LDPTY 429 (656)
T ss_pred CCcceEEEecCCCcccccc--------hHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHc----C--c-cCCCc
Confidence 4578888888888765542 33322 13346888888743333333444444431 1 1 12222
Q ss_pred ecCC----CCCCCCCCCCCCCH--HHHHHHHhcCCHHHHHHHHHHHcC---CCCHHHHHHHHHHH
Q 011937 361 YRVG----HHSTSDDSTKYRTL--DEIEYWKTERSPINRFRNWVERQG---WWSEQEETELRSSI 416 (474)
Q Consensus 361 yR~~----gHs~sDd~~~YR~~--~E~~~w~~~~DPi~r~r~~L~~~G---~~te~e~~~i~~~~ 416 (474)
.|.. |---+||..++|++ +-+.-...-..-..|-...|+++| .||++|+++.++.+
T Consensus 430 ~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav 494 (656)
T KOG4426|consen 430 PRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV 494 (656)
T ss_pred cceeeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 2332 22235676666543 333322212346778889999887 69999998776554
No 307
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=22.54 E-value=3.7e+02 Score=28.99 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=43.3
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHH
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~ 338 (474)
+.++++..||-+.+ .-.+|++.++.+++++=+++.+-. -......+|.+++.|+|+ .++..+
T Consensus 127 ~~I~~ASSGnTgAs------~aaya~rag~~v~Vl~P~g~vs~~-----------k~~q~~~~ga~~i~v~G~-fDda~~ 188 (411)
T COG0498 127 KTILCASSGNTGAS------AAAYAARAGLKVFVLYPKGKVSPG-----------KLAQMLTLGAHVIAVDGN-FDDAQE 188 (411)
T ss_pred CEEEEeCCchHHHH------HHHHhccCCCeEEEEecCCCCCHH-----------HHHHHHhcCCEEEEEcCc-HHHHHH
Confidence 56666667766532 244777888888888765544221 112345678888888884 556666
Q ss_pred HHHHHHH
Q 011937 339 AVQAARE 345 (474)
Q Consensus 339 A~~~A~~ 345 (474)
.++++.+
T Consensus 189 ~vk~~~~ 195 (411)
T COG0498 189 LVKEAAN 195 (411)
T ss_pred HHHHHHh
Confidence 6666665
No 308
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.49 E-value=4.5e+02 Score=26.18 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=41.1
Q ss_pred EEEeCCCcc--ccchHHHHHHHHHHc---CCCEEEEEEcCCcc---------eeee-ccccc-c---CcCHHHHHHHcCc
Q 011937 263 VAYTGDGGT--SEGDFHAALNFAAVM---EAPVVFICRNNGWA---------ISTN-ISEQF-R---SDGIVVKGRAYGI 323 (474)
Q Consensus 263 v~~~GDGa~--~eG~~~EaLn~Aa~~---~LPvIfVv~NN~ya---------ist~-~~~~~-~---~~~ia~~a~ayGi 323 (474)
|.|--||+. +.|.+.-++.+|..+ +..++|+|.+..-. +... ..+.. . ...+.+..+.++.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 81 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKF 81 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCC
Confidence 455567766 577888888888765 34788888764211 1110 00000 0 1124455566677
Q ss_pred eEEEEeCCCHHH
Q 011937 324 RSIRVDGNDALA 335 (474)
Q Consensus 324 ~~i~VDG~D~~a 335 (474)
..+-+|+-+..+
T Consensus 82 d~vV~D~y~~~~ 93 (279)
T TIGR03590 82 DILIVDHYGLDA 93 (279)
T ss_pred CEEEEcCCCCCH
Confidence 788888654433
No 309
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=22.42 E-value=4.3e+02 Score=26.11 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccc--c-ccC----cCHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISE--Q-FRS----DGIV 315 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~--~-~~~----~~ia 315 (474)
+-..+|..++.++.+.+--+|+....|++- =|..+|..++.|++++-..+..+.....+. . ..+ -.+.
T Consensus 95 ~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~-----lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~ 169 (238)
T PRK08558 95 FLRLIAPVVAERFMGLRVDVVLTAATDGIP-----LAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLP 169 (238)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEECcccHH-----HHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEec
Confidence 556778899988876543344444444442 235578889999997665544432111110 0 000 0111
Q ss_pred HHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 316 VKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 316 ~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+.+..-|-.++-|| |+.+-=..+..+.+.+++.+ ..++.+
T Consensus 170 ~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~g-a~vvgv 209 (238)
T PRK08558 170 ASALKKGDRVLIVD--DIIRSGETQRALLDLARQAG-ADVVGV 209 (238)
T ss_pred HHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHcC-CEEEEE
Confidence 22323488999999 77776666666666666554 344433
No 310
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=22.10 E-value=4.5e+02 Score=21.92 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=30.7
Q ss_pred ccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCH
Q 011937 272 SEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (474)
Q Consensus 272 ~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~ 333 (474)
++-.+..+.++|..++.++.++...+.-........+..-..+.+.++..+.+...+.+.++
T Consensus 12 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T cd01987 12 AERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDV 73 (124)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 33345566677777776644444333211000000011112344567778888877776665
No 311
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=22.08 E-value=1.4e+02 Score=22.43 Aligned_cols=13 Identities=62% Similarity=0.851 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHh
Q 011937 374 KYRTLDEIEYWKT 386 (474)
Q Consensus 374 ~YR~~~E~~~w~~ 386 (474)
=||+.+|+..|..
T Consensus 20 C~RT~dEI~~W~~ 32 (51)
T PF06945_consen 20 CGRTLDEIRDWKS 32 (51)
T ss_pred CCCcHHHHHHHhh
Confidence 4899999999974
No 312
>PRK06260 threonine synthase; Validated
Probab=21.70 E-value=4.1e+02 Score=28.12 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=28.7
Q ss_pred chHHHHHH-HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCC
Q 011937 274 GDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (474)
Q Consensus 274 G~~~EaLn-~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~ 331 (474)
|..-.++. .|+..++++++++-.+.. + ..-....+.||..++.|+|+
T Consensus 124 GN~g~alA~~aa~~G~~~~i~vP~~~~----------~-~~k~~~~~~~GA~vi~v~~~ 171 (397)
T PRK06260 124 GNTSASLAAYAARAGLKCYVLLPAGKV----------A-LGKLAQALLHGAKVLEVDGN 171 (397)
T ss_pred cHHHHHHHHHHHHcCCcEEEEEeCCCc----------c-HHHHHHHHhcCCEEEEECCc
Confidence 33333443 456789998888864421 0 11122356799999999984
No 313
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.70 E-value=5.1e+02 Score=27.50 Aligned_cols=115 Identities=15% Similarity=0.019 Sum_probs=60.2
Q ss_pred cccCCCC--CchHHHHHHHHHhhhccCCceEEEEeCCCcc-ccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccccc
Q 011937 234 TISSPIA--TQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQF 309 (474)
Q Consensus 234 ~~sg~lG--~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~~~ 309 (474)
.++|.|+ .+.+.|+|.-+..+.++..-.|+ +-|..- .||.-.- ..-....++|+.+|++|-- |-++. ..
T Consensus 174 cnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~--v~EsRP~~qG~rlt-a~eL~~~GIpvtlI~Dsa~~~~m~~--~~-- 246 (363)
T PRK05772 174 CNAGGLATGTGLGTALAPVKLAKALGMSVSVI--APETRPWLQGSRLT-VYELMEEGIKVTLITDTAVGLVMYK--DM-- 246 (363)
T ss_pred cCCcchhhccccccHHHHHHHHHHCCCeEEEE--ECCCCccchhHHHH-HHHHHHCCCCEEEEehhHHHHHHhh--cC--
Confidence 3456665 34566777655555444443344 334433 4563111 1123457899999987653 22221 00
Q ss_pred cCcCHHHHHHHcCceEEEEeC---CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCC
Q 011937 310 RSDGIVVKGRAYGIRSIRVDG---NDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHH 366 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~VDG---~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gH 366 (474)
.+ .--.|...+..|| |.+-.. ...-.| +..+.|+++-+-+|.+.-.
T Consensus 247 --Vd----~VivGAD~I~~NG~v~NKiGTy-~lA~~A----k~~~vPfyV~ap~~k~d~~ 295 (363)
T PRK05772 247 --VN----NVMVGADRILRDGHVFNKIGTF-KEAVIA----HELGIPFYALAPTSTFDLK 295 (363)
T ss_pred --CC----EEEECccEEecCCCEeehhhhH-HHHHHH----HHhCCCEEEEccccccCcc
Confidence 01 0114788888887 443322 222223 3368999999888776543
No 314
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.30 E-value=2.6e+02 Score=26.51 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=35.1
Q ss_pred ccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC
Q 011937 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (474)
Q Consensus 256 ~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ 298 (474)
..++.+++++-.-|... ...+++..|...+.|+|.|+.|++
T Consensus 109 ~~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36788999999999885 578999999999999999997754
No 315
>PRK07668 hypothetical protein; Validated
Probab=21.30 E-value=2.5e+02 Score=28.29 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011937 388 RSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQV 426 (474)
Q Consensus 388 ~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~ 426 (474)
.+=+.+++++|..+| .+|+|.+++-.|+..++.++.+.
T Consensus 7 eefl~~L~~yL~~~g-lseeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 7 RKFLDDTRVYLIAKG-IKEEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 456778999999988 59999999999988888887664
No 316
>PRK11761 cysM cysteine synthase B; Provisional
Probab=21.23 E-value=7.1e+02 Score=25.12 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=29.8
Q ss_pred chHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC
Q 011937 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (474)
Q Consensus 274 G~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG 330 (474)
|..--++.++ +.+++|+++++-++- ...-.+..+.||.+++.+++
T Consensus 72 GN~g~alA~~a~~~G~~~~i~~p~~~------------~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 72 GNTGIALAMIAAIKGYRMKLIMPENM------------SQERRAAMRAYGAELILVPK 117 (296)
T ss_pred ChHHHHHHHHHHHcCCCEEEEECCCC------------CHHHHHHHHHcCCEEEEeCC
Confidence 4444445554 468899988885431 11234567889999999985
No 317
>PRK07328 histidinol-phosphatase; Provisional
Probab=21.12 E-value=3e+02 Score=27.26 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcE
Q 011937 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPV 354 (474)
Q Consensus 276 ~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPv 354 (474)
+.+.+..+...+.. +=|+.+++.- +....++...+.++++.+|++.. .-|.|++..|-..+.+|.+.+++-+=+-
T Consensus 179 ~~~il~~~~~~g~~--lEiNt~~~r~--~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~ 254 (269)
T PRK07328 179 YEEALDVIAAAGLA--LEVNTAGLRK--PVGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTE 254 (269)
T ss_pred HHHHHHHHHHcCCE--EEEEchhhcC--CCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcE
Confidence 45556666666543 3333333322 23345667789999999999843 3478999999888888998888766443
Q ss_pred E
Q 011937 355 L 355 (474)
Q Consensus 355 L 355 (474)
+
T Consensus 255 ~ 255 (269)
T PRK07328 255 T 255 (269)
T ss_pred E
Confidence 3
No 318
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=21.08 E-value=3.4e+02 Score=27.20 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=35.9
Q ss_pred HHH-HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcE
Q 011937 279 ALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (474)
Q Consensus 279 aLn-~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPv 354 (474)
++. .|..+++|+++++-.+- + ..-...-+.||..++.++|+. ....+++.|.+.+.+.+++.
T Consensus 71 alA~~a~~~Gl~~~i~vp~~~-----~-------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~ 133 (298)
T TIGR01139 71 ALAMVAAARGYKLILTMPETM-----S-------IERRKLLKAYGAELVLTPGAE--GMKGAIAKAEEIAASTPNSY 133 (298)
T ss_pred HHHHHHHHcCCeEEEEeCCcc-----C-------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCcE
Confidence 344 44568999888775431 1 112455678999999999753 12234445555544443333
No 319
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=20.96 E-value=3e+02 Score=27.45 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=44.9
Q ss_pred hHHHHHHHHHH-cCCC-EE-EEEEc--CCccee---eeccccccCcCHHHHHHHcCceEEEEeC-CCHHHHHHHHHHHHH
Q 011937 275 DFHAALNFAAV-MEAP-VV-FICRN--NGWAIS---TNISEQFRSDGIVVKGRAYGIRSIRVDG-NDALAVYTAVQAARE 345 (474)
Q Consensus 275 ~~~EaLn~Aa~-~~LP-vI-fVv~N--N~yais---t~~~~~~~~~~ia~~a~ayGi~~i~VDG-~D~~av~~A~~~A~~ 345 (474)
.+.|||.+|+. ...| || =+|.. -.|-.. +..-.-++-..+...+.-.|..++-|++ .|+.++.+-+
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yL----- 224 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCL----- 224 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHH-----
Confidence 68999999985 5577 33 35543 245221 1111123344555666678999999998 4666655433
Q ss_pred HHhcCCCcEEEE
Q 011937 346 MAISEKRPVLVE 357 (474)
Q Consensus 346 ~ar~~~gPvLIe 357 (474)
.++|+||+
T Consensus 225 ----E~~pvLI~ 232 (232)
T TIGR01204 225 ----EQKPILIE 232 (232)
T ss_pred ----hcCcEEeC
Confidence 25799984
No 320
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.91 E-value=2.3e+02 Score=24.07 Aligned_cols=39 Identities=31% Similarity=0.281 Sum_probs=29.4
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN 297 (474)
+++.++|++--.|... +..+++..|...+.|+|.|..|.
T Consensus 45 ~~~d~~I~iS~sG~t~--e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETA--DTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCH--HHHHHHHHHHHcCCeEEEEECCC
Confidence 4566777777777776 36778888888888888888764
No 321
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.88 E-value=2e+02 Score=24.60 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=39.1
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEE
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV 328 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~V 328 (474)
+++.++|++--.|... +..+++..|...+.|+|.|..|+ .+++.+...|.+.+.|
T Consensus 42 ~~~dl~I~iS~SG~t~--e~i~~~~~a~~~g~~iI~IT~~~---------------~l~~~~~~~~~~~~~~ 96 (119)
T cd05017 42 DRKTLVIAVSYSGNTE--ETLSAVEQAKERGAKIVAITSGG---------------KLLEMAREHGVPVIII 96 (119)
T ss_pred CCCCEEEEEECCCCCH--HHHHHHHHHHHCCCEEEEEeCCc---------------hHHHHHHHcCCcEEEC
Confidence 4667888888888876 47788888888888888887432 1445555556666665
No 322
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=20.78 E-value=51 Score=31.46 Aligned_cols=16 Identities=6% Similarity=0.254 Sum_probs=11.8
Q ss_pred CCCEEEEEEcCCccee
Q 011937 287 EAPVVFICRNNGWAIS 302 (474)
Q Consensus 287 ~LPvIfVv~NN~yais 302 (474)
+.|||.|+=+..+.++
T Consensus 66 ~~~vv~i~GDGsf~m~ 81 (205)
T cd02003 66 DREVYVLVGDGSYLML 81 (205)
T ss_pred CCeEEEEEccchhhcc
Confidence 5688888888877653
No 323
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=20.74 E-value=9.1e+02 Score=24.66 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=73.3
Q ss_pred CceEEEEeCCCcccc--c--hHHHHH-HHHHHc--CCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC-
Q 011937 259 DACAVAYTGDGGTSE--G--DFHAAL-NFAAVM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG- 330 (474)
Q Consensus 259 d~vvv~~~GDGa~~e--G--~~~EaL-n~Aa~~--~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG- 330 (474)
+.++|.-+..|.... | .+...+ .+|... +.||.+=.+ -+. ..+...+|-..|+.++=+||
T Consensus 42 ~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLD-Hg~-----------~~e~i~~ai~~GftSVMiDgS 109 (288)
T TIGR00167 42 KSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLD-HGA-----------SEEDCAQAVKAGFSSVMIDGS 109 (288)
T ss_pred CCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECC-CCC-----------CHHHHHHHHHcCCCEEEecCC
Confidence 457888888887753 3 122222 233345 567554332 221 22455677778999999998
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC----CCCCCCCCHHHHHHHHh
Q 011937 331 -NDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS----DDSTKYRTLDEIEYWKT 386 (474)
Q Consensus 331 -~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s----Dd~~~YR~~~E~~~w~~ 386 (474)
-+.++=.+-+++.+++|+..+ +-||+..=..+|-... ++...|.+++|.+++-+
T Consensus 110 ~lp~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~ 168 (288)
T TIGR00167 110 HEPFEENIELTKKVVERAHKMG--VSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVK 168 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHh
Confidence 466777777888888887764 6788887777654322 22346999999998863
No 324
>PRK13761 hypothetical protein; Provisional
Probab=20.66 E-value=2.7e+02 Score=27.81 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=5.2
Q ss_pred ceEEEEeCCC
Q 011937 323 IRSIRVDGND 332 (474)
Q Consensus 323 i~~i~VDG~D 332 (474)
-|++.|+||-
T Consensus 69 ~PVISVNGN~ 78 (248)
T PRK13761 69 HPVISVNGNT 78 (248)
T ss_pred CCeEEEcchH
Confidence 3555555553
No 325
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.66 E-value=1.9e+02 Score=26.21 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=33.9
Q ss_pred cCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC
Q 011937 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ 298 (474)
+++.+++++..-|... ...+++..|...+.|+|.|+.|..
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6778899999888875 578999999999999999997653
No 326
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.56 E-value=1.6e+02 Score=28.32 Aligned_cols=38 Identities=32% Similarity=0.384 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011937 388 RSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQV 426 (474)
Q Consensus 388 ~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~ 426 (474)
+|=+.+++++|.+.| .+|++.+++-.|+-.++.+|-+.
T Consensus 7 ~~y~~~l~~~L~~~~-~~e~~~e~~L~eil~~LleaQk~ 44 (206)
T PF06570_consen 7 QEYIFDLRKYLRSSG-VSEEEIEELLEEILPHLLEAQKK 44 (206)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhC
Confidence 456778999998877 59999999999998888887653
No 327
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.48 E-value=3.1e+02 Score=26.97 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=49.8
Q ss_pred cCCceEEEEeCCCcc--ccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 257 KKDACAVAYTGDGGT--SEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 257 ~~d~vvv~~~GDGa~--~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
.|+.+.....-+|.. ..|....++.+|..-++ |+-++|+= -.......+.+++.+.|+.+|++.+.++
T Consensus 133 ~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEi-----l~~dG~ma~~~~~~~fA~~~~l~~isi~ 203 (214)
T PRK01792 133 RPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEI-----TNDDGTMARTPEIVEFAKKFGYAVVTIE 203 (214)
T ss_pred CCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEE-----ecCCCCccCHHHHHHHHHHcCCcEEEHH
Confidence 467777778878877 58888889999999998 88877751 1011122345678889999999998765
No 328
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=20.45 E-value=4e+02 Score=20.78 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHHHHHH----HHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 011937 378 LDEIEYWKTERSPINRFR----NWVERQGWWSEQEETELRSSIKKQLLQA 423 (474)
Q Consensus 378 ~~E~~~w~~~~DPi~r~r----~~L~~~G~~te~e~~~i~~~~~~~v~~a 423 (474)
..|++.|.+ -+.-++ ...++.|.+|.++-+.|.+.+.+.....
T Consensus 6 k~el~~l~~---qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 6 KKELKALYK---QMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 356666643 233333 4446789999999999998887776654
No 329
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.40 E-value=3.2e+02 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 011937 395 RNWVERQGWWSEQEETELRSSIKKQLLQ 422 (474)
Q Consensus 395 r~~L~~~G~~te~e~~~i~~~~~~~v~~ 422 (474)
+..+.-.|.|++++.+++++.+++....
T Consensus 39 ~~l~~~~g~l~deea~~~~~~i~e~r~~ 66 (71)
T PF02697_consen 39 RDLMDYFGILSDEEADEMEKDIKEEREE 66 (71)
T ss_pred hHHHHHhccCChhhHHHHHHHHHHHHHH
Confidence 4455567999999998888777766544
No 330
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=20.39 E-value=3.9e+02 Score=30.27 Aligned_cols=63 Identities=22% Similarity=0.133 Sum_probs=35.3
Q ss_pred CCceEEEEeCCCccccc-----hHHHHHHHHHH---cCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 258 KDACAVAYTGDGGTSEG-----DFHAALNFAAV---MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG-----~~~EaLn~Aa~---~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
..+.+|+++.||..+.+ ...+++..|.. .++++++|-..++ .....-..++|+..|..++.+|
T Consensus 563 ~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~---------~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 563 DGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG---------FVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred CCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC---------CcchhHHHHHHHhhCCeEEecC
Confidence 35678999999988653 23444544444 3455554432211 1111234567777888777653
No 331
>PLN02618 tryptophan synthase, beta chain
Probab=20.24 E-value=5e+02 Score=27.93 Aligned_cols=69 Identities=25% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHhhhccCCceEEEEeCCCccccchHHHHHH-HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 246 AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn-~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+++.++..+..+.+ .+|+-.|-|-. | -++. .|+.+++++++++-.+. + ..+ ..-..+.+.||..
T Consensus 107 a~~~~l~A~~~g~~-~vIaesgaGNh--G---~AlA~aaa~~Gl~~~I~m~~~~--~----~~~---~~nv~~mr~lGA~ 171 (410)
T PLN02618 107 AVAQALLAKRLGKK-RIIAETGAGQH--G---VATATVCARFGLECIVYMGAQD--M----ERQ---ALNVFRMRLLGAE 171 (410)
T ss_pred HHHHHHHHHHcCCC-EEEEEcCcHHH--H---HHHHHHHHHcCCcEEEEEcCCc--h----hhh---hhhHHHHHHCCCE
Confidence 55555554544543 45555554432 2 2333 45678999887775432 1 111 1122467889999
Q ss_pred EEEEe
Q 011937 325 SIRVD 329 (474)
Q Consensus 325 ~i~VD 329 (474)
++.|+
T Consensus 172 Vi~v~ 176 (410)
T PLN02618 172 VRPVH 176 (410)
T ss_pred EEEEe
Confidence 99993
Done!