Query 011937
Match_columns 474
No_of_seqs 350 out of 2475
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 18:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 3.9E-90 1.3E-94 720.3 39.3 394 80-473 5-398 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 2.9E-82 9.8E-87 661.8 37.6 351 105-457 50-407 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 6.3E-81 2.1E-85 644.5 38.0 349 104-462 18-367 (368)
4 1umd_A E1-alpha, 2-OXO acid de 100.0 1.4E-77 4.9E-82 619.3 40.4 356 104-461 11-367 (367)
5 2ozl_A PDHE1-A type I, pyruvat 100.0 3.1E-76 1.1E-80 608.7 36.6 327 123-453 27-355 (365)
6 2yic_A 2-oxoglutarate decarbox 100.0 6.9E-62 2.3E-66 547.0 21.0 361 106-472 90-499 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 5.2E-60 1.8E-64 543.2 25.9 362 106-473 335-745 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 5E-60 1.7E-64 534.7 23.0 362 106-471 170-571 (933)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1.8E-31 6.2E-36 292.1 16.4 230 120-369 16-291 (621)
10 1gpu_A Transketolase; transfer 100.0 1.7E-28 5.9E-33 271.1 26.5 199 181-391 60-281 (680)
11 2e6k_A Transketolase; structur 100.0 3.9E-29 1.3E-33 275.0 19.2 197 182-392 63-282 (651)
12 1r9j_A Transketolase; domains, 100.0 1.7E-27 5.7E-32 262.9 29.3 221 153-386 24-277 (673)
13 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 5.7E-30 1.9E-34 280.7 9.5 225 122-367 20-294 (629)
14 3rim_A Transketolase, TK; TPP, 100.0 9.8E-28 3.3E-32 265.0 27.0 240 131-385 21-296 (700)
15 3mos_A Transketolase, TK; thia 100.0 3.6E-27 1.2E-31 257.9 24.5 235 126-375 4-255 (616)
16 1itz_A Transketolase; calvin c 99.9 2.5E-26 8.5E-31 253.7 27.4 245 125-386 9-289 (675)
17 2r8o_A Transketolase 1, TK 1; 99.9 1.1E-26 3.8E-31 256.2 22.7 195 181-386 58-275 (669)
18 3uk1_A Transketolase; structur 99.9 1.5E-26 5.3E-31 255.9 21.3 192 181-384 98-313 (711)
19 3kom_A Transketolase; rossmann 99.9 2.1E-26 7.1E-31 253.5 21.6 193 181-384 59-275 (663)
20 3l84_A Transketolase; TKT, str 99.9 1.6E-25 5.5E-30 245.2 28.2 207 154-375 25-255 (632)
21 3m49_A Transketolase; alpha-be 99.9 3.6E-25 1.2E-29 244.5 27.8 195 180-385 82-300 (690)
22 2qtc_A Pyruvate dehydrogenase 99.9 6.4E-25 2.2E-29 247.7 20.6 249 129-386 74-422 (886)
23 4feg_A Pyruvate oxidase; carba 99.9 7.2E-24 2.5E-28 230.9 11.4 164 235-409 418-597 (603)
24 3ahc_A Phosphoketolase, xylulo 99.6 4.9E-16 1.7E-20 173.5 13.1 140 221-364 159-322 (845)
25 1v5e_A Pyruvate oxidase; oxido 99.6 7.5E-16 2.6E-20 167.3 11.3 121 235-364 411-541 (590)
26 2pan_A Glyoxylate carboligase; 99.6 5.8E-16 2E-20 168.9 8.7 122 235-364 440-582 (616)
27 2uz1_A Benzaldehyde lyase; thi 99.6 1.2E-15 4.1E-20 164.6 9.3 117 236-362 418-546 (563)
28 1q6z_A BFD, BFDC, benzoylforma 99.6 1.2E-15 4.1E-20 163.3 8.1 114 237-362 401-525 (528)
29 2vk8_A Pyruvate decarboxylase 99.6 6.5E-16 2.2E-20 166.6 4.9 121 235-362 411-542 (563)
30 1ozh_A ALS, acetolactate synth 99.6 1.7E-15 5.8E-20 163.7 7.9 117 235-363 418-544 (566)
31 2iht_A Carboxyethylarginine sy 99.6 2.6E-15 8.8E-20 162.4 8.4 116 235-362 434-561 (573)
32 3eya_A Pyruvate dehydrogenase 99.6 8.2E-15 2.8E-19 157.7 11.3 118 235-364 404-531 (549)
33 1t9b_A Acetolactate synthase, 99.6 4.7E-15 1.6E-19 163.9 9.3 118 235-364 511-639 (677)
34 2pgn_A Cyclohexane-1,2-dione h 99.5 2.5E-15 8.6E-20 163.1 6.2 118 236-365 423-550 (589)
35 1ybh_A Acetolactate synthase, 99.5 1.3E-14 4.3E-19 157.6 11.4 119 235-365 424-561 (590)
36 2vbi_A Pyruvate decarboxylase; 99.5 6E-15 2E-19 159.3 8.3 116 235-362 407-533 (566)
37 2vbf_A Branched-chain alpha-ke 99.5 9.7E-15 3.3E-19 157.7 9.3 117 235-362 423-551 (570)
38 2wvg_A PDC, pyruvate decarboxy 99.5 1.5E-14 5.2E-19 156.2 9.7 117 235-362 411-541 (568)
39 2nxw_A Phenyl-3-pyruvate decar 99.5 9.2E-15 3.1E-19 158.0 7.5 115 236-362 421-542 (565)
40 1ovm_A Indole-3-pyruvate decar 99.5 6.7E-15 2.3E-19 158.2 6.1 116 235-362 406-532 (552)
41 2c31_A Oxalyl-COA decarboxylas 99.5 2.5E-14 8.4E-19 154.5 10.4 116 235-363 424-548 (568)
42 2q28_A Oxalyl-COA decarboxylas 99.5 4E-14 1.4E-18 152.7 10.1 117 235-364 419-546 (564)
43 3hww_A 2-succinyl-5-enolpyruvy 99.5 3.7E-14 1.3E-18 152.9 6.6 114 235-362 415-539 (556)
44 2x7j_A 2-succinyl-5-enolpyruvy 99.4 2.7E-14 9.3E-19 155.4 4.2 114 236-362 454-580 (604)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.4 1.7E-13 5.7E-18 148.5 6.5 109 240-362 439-560 (578)
46 2c42_A Pyruvate-ferredoxin oxi 98.7 9.4E-08 3.2E-12 111.7 14.4 99 259-363 953-1071(1231)
47 2iht_A Carboxyethylarginine sy 93.6 0.22 7.4E-06 53.4 9.7 107 245-360 63-170 (573)
48 1ybh_A Acetolactate synthase, 93.3 0.22 7.5E-06 53.5 9.1 107 244-360 64-171 (590)
49 1ozh_A ALS, acetolactate synth 93.2 0.24 8.2E-06 53.0 9.3 106 245-360 63-169 (566)
50 2uz1_A Benzaldehyde lyase; thi 93.0 0.29 1E-05 52.2 9.6 106 245-360 56-163 (563)
51 2pgn_A Cyclohexane-1,2-dione h 92.9 0.35 1.2E-05 52.0 10.0 105 245-359 58-163 (589)
52 2vbi_A Pyruvate decarboxylase; 92.2 0.4 1.4E-05 51.2 9.2 108 244-360 55-168 (566)
53 2wvg_A PDC, pyruvate decarboxy 92.1 0.46 1.6E-05 50.7 9.6 108 244-360 55-168 (568)
54 2q28_A Oxalyl-COA decarboxylas 92.0 0.32 1.1E-05 51.9 8.2 107 245-359 60-167 (564)
55 1t9b_A Acetolactate synthase, 91.8 0.38 1.3E-05 52.9 8.7 105 245-359 135-240 (677)
56 3eya_A Pyruvate dehydrogenase 91.7 0.36 1.2E-05 51.4 8.1 105 245-359 56-160 (549)
57 2nxw_A Phenyl-3-pyruvate decar 91.3 0.4 1.4E-05 51.3 8.1 108 245-360 74-185 (565)
58 1yd7_A 2-keto acid:ferredoxin 91.2 0.21 7.3E-06 51.3 5.6 108 243-361 77-188 (395)
59 2c31_A Oxalyl-COA decarboxylas 91.2 0.35 1.2E-05 51.6 7.5 107 245-359 62-169 (568)
60 1v5e_A Pyruvate oxidase; oxido 91.1 0.35 1.2E-05 52.1 7.3 108 244-363 57-165 (590)
61 4feg_A Pyruvate oxidase; carba 89.8 0.39 1.3E-05 51.8 6.3 104 245-359 65-169 (603)
62 3mos_A Transketolase, TK; thia 88.9 1.4 4.9E-05 47.8 10.0 100 244-358 369-470 (616)
63 2vk8_A Pyruvate decarboxylase 88.9 0.79 2.7E-05 48.8 7.8 108 244-360 56-169 (563)
64 2x7j_A 2-succinyl-5-enolpyruvy 88.8 0.5 1.7E-05 50.9 6.2 107 245-361 84-198 (604)
65 2o1s_A 1-deoxy-D-xylulose-5-ph 88.5 0.92 3.1E-05 49.2 8.1 102 243-358 374-476 (621)
66 2pan_A Glyoxylate carboligase; 88.4 1.4 4.8E-05 47.5 9.5 106 245-359 80-186 (616)
67 3kom_A Transketolase; rossmann 88.2 1.5 5.2E-05 48.1 9.7 101 243-357 416-518 (663)
68 2vbf_A Branched-chain alpha-ke 87.1 1.2 4.2E-05 47.4 8.0 107 244-360 77-189 (570)
69 2r8o_A Transketolase 1, TK 1; 87.0 2.4 8.4E-05 46.4 10.4 101 243-357 415-517 (669)
70 1q6z_A BFD, BFDC, benzoylforma 86.6 0.69 2.4E-05 48.8 5.7 108 244-360 52-160 (528)
71 2e6k_A Transketolase; structur 86.4 2.4 8.1E-05 46.4 9.9 102 243-358 410-513 (651)
72 3lq1_A 2-succinyl-5-enolpyruvy 85.3 1 3.5E-05 48.2 6.2 108 245-360 64-177 (578)
73 1itz_A Transketolase; calvin c 85.2 3 0.0001 45.7 10.0 101 244-358 428-531 (675)
74 3m49_A Transketolase; alpha-be 85.0 2.8 9.7E-05 46.2 9.7 101 243-357 440-542 (690)
75 1qs0_B 2-oxoisovalerate dehydr 85.0 1.5 5.2E-05 43.7 6.9 98 243-357 65-172 (338)
76 2o1x_A 1-deoxy-D-xylulose-5-ph 84.5 1.1 3.9E-05 48.6 6.2 101 243-358 377-478 (629)
77 1gpu_A Transketolase; transfer 84.1 2.8 9.4E-05 46.1 9.1 100 244-357 423-525 (680)
78 3l84_A Transketolase; TKT, str 83.7 3.8 0.00013 44.7 9.8 100 243-357 395-496 (632)
79 2ozl_B PDHE1-B, pyruvate dehyd 83.3 2.7 9.1E-05 42.2 7.9 98 243-358 75-183 (341)
80 1ovm_A Indole-3-pyruvate decar 82.2 2.1 7.3E-05 45.2 7.0 108 243-360 56-169 (552)
81 1r9j_A Transketolase; domains, 81.5 5.9 0.0002 43.4 10.4 100 244-357 416-517 (673)
82 3uk1_A Transketolase; structur 80.5 5.6 0.00019 44.0 9.8 100 243-357 461-562 (711)
83 1ik6_A Pyruvate dehydrogenase; 79.0 7 0.00024 39.6 9.3 97 243-357 111-218 (369)
84 1umd_B E1-beta, 2-OXO acid deh 78.9 7 0.00024 38.6 9.1 97 243-357 64-171 (324)
85 3hww_A 2-succinyl-5-enolpyruvy 72.2 4.3 0.00015 43.1 5.9 106 245-360 61-170 (556)
86 3rim_A Transketolase, TK; TPP, 71.5 12 0.00041 41.3 9.3 101 243-357 445-549 (700)
87 2c42_A Pyruvate-ferredoxin oxi 71.0 9.1 0.00031 45.0 8.6 107 243-364 67-176 (1231)
88 1w85_B Pyruvate dehydrogenase 70.7 8 0.00027 38.2 7.1 97 243-357 63-170 (324)
89 3ibs_A Conserved hypothetical 69.3 21 0.00071 32.0 9.1 90 240-329 91-196 (218)
90 2bfd_B 2-oxoisovalerate dehydr 69.1 9.8 0.00034 38.0 7.4 98 243-357 80-188 (342)
91 4hhu_A OR280; engineered prote 59.6 27 0.00092 30.0 7.1 35 320-354 81-115 (170)
92 2yic_A 2-oxoglutarate decarbox 44.7 42 0.0014 38.0 7.8 102 243-356 597-707 (868)
93 2jgd_A 2-oxoglutarate dehydrog 44.5 32 0.0011 39.2 6.8 103 246-356 664-775 (933)
94 2xt6_A 2-oxoglutarate decarbox 42.9 43 0.0015 38.9 7.7 103 246-356 841-952 (1113)
95 2zzd_B Thiocyanate hydrolase s 39.6 38 0.0013 30.4 5.2 37 381-423 109-145 (157)
96 4hhu_A OR280; engineered prote 35.5 47 0.0016 28.5 4.8 99 322-429 2-114 (170)
97 2q5c_A NTRC family transcripti 33.0 47 0.0016 30.3 4.9 84 262-350 96-187 (196)
98 3ljc_A ATP-dependent protease 32.3 77 0.0026 29.8 6.5 68 377-463 183-250 (252)
99 2pqm_A Cysteine synthase; OASS 28.8 3.7E+02 0.013 26.1 11.1 65 274-353 87-153 (343)
100 2kl8_A OR15; structural genomi 28.6 70 0.0024 24.5 4.3 29 326-354 5-33 (85)
101 2e62_A Protein AT5G25060; CWF2 28.0 96 0.0033 23.5 4.9 33 391-423 25-57 (61)
102 2w84_A Peroxisomal membrane pr 26.8 64 0.0022 25.1 3.8 22 389-411 33-54 (70)
103 3f9u_A Putative exported cytoc 26.2 1.1E+02 0.0038 26.0 5.9 37 103-140 128-165 (172)
104 2pju_A Propionate catabolism o 25.7 1.7E+02 0.0057 27.4 7.4 71 278-350 120-198 (225)
105 2x5n_A SPRPN10, 26S proteasome 24.1 86 0.0029 28.3 5.0 54 241-294 84-142 (192)
106 2fwh_A Thiol:disulfide interch 24.0 1E+02 0.0034 25.2 5.0 37 102-138 88-125 (134)
107 3ff5_A PEX14P, peroxisomal bio 23.3 81 0.0028 23.2 3.7 24 388-412 27-50 (54)
108 3o3m_B Beta subunit 2-hydroxya 22.9 4.6E+02 0.016 26.0 10.7 88 377-467 129-225 (385)
109 3c5c_A RAS-like protein 12; GD 22.5 2.9E+02 0.0098 23.5 8.0 89 256-348 90-185 (187)
110 3kcq_A Phosphoribosylglycinami 22.4 1.2E+02 0.0041 28.2 5.7 56 258-330 8-66 (215)
111 2khz_A C-MYC-responsive protei 22.2 88 0.003 27.6 4.5 38 256-297 76-113 (165)
112 3dwg_A Cysteine synthase B; su 22.0 3.5E+02 0.012 26.1 9.3 46 274-331 82-128 (325)
113 3ehd_A Uncharacterized conserv 21.8 3.1E+02 0.01 24.3 8.0 82 255-342 67-159 (162)
114 1y7l_A O-acetylserine sulfhydr 21.7 5.2E+02 0.018 24.5 10.4 66 274-353 71-137 (316)
115 3hbm_A UDP-sugar hydrolase; PS 21.7 1.4E+02 0.0047 28.7 6.2 73 263-336 3-83 (282)
116 1j0a_A 1-aminocyclopropane-1-c 20.6 3E+02 0.01 26.4 8.5 66 274-350 81-148 (325)
117 1m3s_A Hypothetical protein YC 20.4 1.8E+02 0.0062 25.1 6.3 35 259-295 80-114 (186)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=3.9e-90 Score=720.27 Aligned_cols=394 Identities=47% Similarity=0.861 Sum_probs=361.4
Q ss_pred cccccCCCCccCcccccccCCCCCCCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 011937 80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159 (474)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~ 159 (474)
+.++|||+++.||++|+|+++.....+|+|||||+||+++++...+.+++++++++|+.|+++|.||+++.++|+||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~ 84 (400)
T 2bfd_A 5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS 84 (400)
T ss_dssp -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999988889999999999999998766688999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCC
Q 011937 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239 (474)
Q Consensus 160 f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~l 239 (474)
||+++.||||+++|++++|+++|+|+++||+|++++++|++++++|++++|+.+++++|+++++|++.+..++.+.+|+|
T Consensus 85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l 164 (400)
T 2bfd_A 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164 (400)
T ss_dssp CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 240 G~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ 319 (474)
|+++|+|+|+|+|.++++.+++|||++|||++++|.+||+||+|+.++|||||||+||+|+|+++...+++..+++++++
T Consensus 165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 011937 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVE 399 (474)
Q Consensus 320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~ 399 (474)
+|||++++|||||+++|++|+++|+++||++++|+|||++|||.+|||++|+++.||+++|++.|++.+|||.+|+++|+
T Consensus 245 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~ 324 (400)
T 2bfd_A 245 GYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLL 324 (400)
T ss_dssp GGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHT
T ss_pred HcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864589999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHHhCCCCCCCCCC
Q 011937 400 RQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVP 473 (474)
Q Consensus 400 ~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~~~p~~~~~~~~ 473 (474)
+.|||+++++++++++++++|++++++|++.|.|+++++|+|||++.++++.+|+++|+++++++|++|+.++|
T Consensus 325 ~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~ 398 (400)
T 2bfd_A 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 398 (400)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=2.9e-82 Score=661.83 Aligned_cols=351 Identities=38% Similarity=0.576 Sum_probs=337.9
Q ss_pred CCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCCCCcEE
Q 011937 105 RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184 (474)
Q Consensus 105 ~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~~~D~v 184 (474)
.+|+|||||++|+++++ ..+.+++++++++|+.|+++|.||+++..+|+||||+|||++.||||+++|++++|+++|+|
T Consensus 50 ~~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v 128 (407)
T 1qs0_A 50 SYSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred CCCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEE
Confidence 36899999999999865 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEE
Q 011937 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (474)
Q Consensus 185 ~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~ 264 (474)
+++||+|+++|++|+++.++|++++|+..|.++|+++++||++...++++.+|+||+++|+|+|+|+|.|+++++++|||
T Consensus 129 ~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~ 208 (407)
T 1qs0_A 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccc-cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHH
Q 011937 265 YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (474)
Q Consensus 265 ~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~-~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A 343 (474)
++|||++++|.++|+||+|+.|++|+||||+||+|+++++...++ ...+++++|++|||++++|||+|+++|++|+++|
T Consensus 209 i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A 288 (407)
T 1qs0_A 209 WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHH
T ss_pred EECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887766 5678999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 011937 344 REMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQA 423 (474)
Q Consensus 344 ~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a 423 (474)
++++|++++|+|||++|||..|||++||++.||+++|++.|++ +|||.+|+++|+++|+||++++++|+++++++|+++
T Consensus 289 ~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 367 (407)
T 1qs0_A 289 AERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAA 367 (407)
T ss_dssp HHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999984 899999999999999999999999999999999999
Q ss_pred HHHHHh------CCCCChhhhcccccCCCCcCHHHHHHHH
Q 011937 424 IQVAEK------TEKPAITELFSDVYDVPPSNLAEQEKQL 457 (474)
Q Consensus 424 ~~~A~~------~~~p~~~~lf~dVy~~~~~~l~~q~~~l 457 (474)
+++|++ +|+|+++++|+|||+++|++|++|+++|
T Consensus 368 ~~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~ 407 (407)
T 1qs0_A 368 QKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407 (407)
T ss_dssp HHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHTC
T ss_pred HHHHHhcccccCCCCCCHHHHHhhccCCCCHHHHHHHHhC
Confidence 999998 5799999999999999999999999864
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=6.3e-81 Score=644.52 Aligned_cols=349 Identities=39% Similarity=0.633 Sum_probs=327.8
Q ss_pred CCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCCCCcE
Q 011937 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDF 183 (474)
Q Consensus 104 ~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~~~D~ 183 (474)
..+|+|||||++|+++++...+.+++++++++|+.|+++|.||+++.++++||||+|||++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 46799999999999988765678999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEE
Q 011937 184 ILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263 (474)
Q Consensus 184 v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv 263 (474)
|+++||+|++++++|+++.++|++++|+.+ |+.| | .+.++.+.+|+||+++|+|+|+|+|.|+++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~~~--h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GNQI--P---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GGCC--C---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CCCC--C---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999864 4444 4 356888999999999999999999999999999999
Q ss_pred EEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHH
Q 011937 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (474)
Q Consensus 264 ~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A 343 (474)
|++|||++++|.++|+||+|+.+++||||||+||+|+|+++...+.+..++++++++|||++++|||||+++|++|+++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888887789999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEEEecCCCCC-CCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 011937 344 REMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQ 422 (474)
Q Consensus 344 ~~~ar~~~gPvLIe~~TyR~~gHs-~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~ 422 (474)
++++|++++|+|||++|||.+||| ++|||+.||+++|++.|++ +|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 327 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKE 327 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999985 99999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHHH
Q 011937 423 AIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQ 462 (474)
Q Consensus 423 a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l~ 462 (474)
++++|++.|+|+++++|+|||+++|++|++|+++++++++
T Consensus 328 a~~~a~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~ 367 (368)
T 1w85_A 328 AIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKES 367 (368)
T ss_dssp HHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 4
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.4e-77 Score=619.26 Aligned_cols=356 Identities=38% Similarity=0.604 Sum_probs=343.8
Q ss_pred CCCCeeEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCCCC-c
Q 011937 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-D 182 (474)
Q Consensus 104 ~~~p~~rv~~~~g~~~~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~~~-D 182 (474)
..+|+|||||++|+++++ ..+.+++++++++|+.|+++|.||.++..++++|+++|++++.|+|++.+|++.+|+++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 567999999999999877 56789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEeccCcchHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceE
Q 011937 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (474)
Q Consensus 183 ~v~~~yR~~g~~l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vv 262 (474)
+|+++||+|++++.+|+++.++|++++|+.+++++|+++++|++++..++.+++|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998878899999999999999999999999999999999
Q ss_pred EEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHH
Q 011937 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQA 342 (474)
Q Consensus 263 v~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~ 342 (474)
||++|||++++|.++|+||+|+.+++|+||||+||+|+|+++.....+..++++++++||+++++|||+|+.+|++|+++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987777778999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 011937 343 AREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQ 422 (474)
Q Consensus 343 A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~ 422 (474)
|+++++++++|+|||++|||..|||++|||+.||+++|++.|++ +|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHT-TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHHc-CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhhhcccccCCCCcCHHHHHHHHHHHH
Q 011937 423 AIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEII 461 (474)
Q Consensus 423 a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~l~~~l 461 (474)
++++|++.|+|+++++|+|||+++|+++++|++++++++
T Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~ 367 (367)
T 1umd_A 329 GLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367 (367)
T ss_dssp HHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHhhhcCCCChhHHHHHHHHHhhC
Confidence 999999999999999999999999999999999998763
No 5
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=3.1e-76 Score=608.69 Aligned_cols=327 Identities=27% Similarity=0.412 Sum_probs=310.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchHHHHHHHhhcCCCCcEEeccCcchHHHHHcCCCH
Q 011937 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (474)
Q Consensus 123 ~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri-~f~~~~~GqEA~~vg~a~aL~~~D~v~~~yR~~g~~l~rG~~~ 201 (474)
..+.+++++++++|+.|+++|.||+++..+||||+| +|||++.||||+++|++++|+++|+|+++||+|++++++|+++
T Consensus 27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~ 106 (365)
T 2ozl_A 27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 106 (365)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence 345799999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHH
Q 011937 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN 281 (474)
Q Consensus 202 ~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn 281 (474)
.++|+|++|+.+++++|+++++|+.+ .++++.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.++|+||
T Consensus 107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn 184 (365)
T 2ozl_A 107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 184 (365)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHH
Confidence 99999999999999999998999864 4888889999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 282 FAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 282 ~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
+|+.|++||||||+||+|+|+++...+....++++ ++||+++++|||||+++|++|+++|++++|++++|+|||++||
T Consensus 185 ~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 262 (365)
T 2ozl_A 185 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTY 262 (365)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 99999999999999999999998877776778877 5899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhccc
Q 011937 362 RVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSD 441 (474)
Q Consensus 362 R~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~d 441 (474)
|.+|||++|+++.||+++|++.|++.+|||.+|+++|+++|+||++++++|+++++++|++++++|++.|+|+++++|+|
T Consensus 263 R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~ 342 (365)
T 2ozl_A 263 RYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYH 342 (365)
T ss_dssp CSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCS
T ss_pred cCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhh
Confidence 99999999988899999999999855799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc-CHHHH
Q 011937 442 VYDVPPS-NLAEQ 453 (474)
Q Consensus 442 Vy~~~~~-~l~~q 453 (474)
||+++|+ .+++|
T Consensus 343 vy~~~~~~~~~~~ 355 (365)
T 2ozl_A 343 IYSSDPPFEVRGA 355 (365)
T ss_dssp SSSSCCCEEEECS
T ss_pred hcCCCChhhhccc
Confidence 9998766 44444
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=6.9e-62 Score=547.02 Aligned_cols=361 Identities=15% Similarity=0.157 Sum_probs=298.8
Q ss_pred CCeeEEeCCCCC-cc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhc---
Q 011937 106 VPCFRVLDDNGE-LI----KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAA--- 177 (474)
Q Consensus 106 ~p~~rv~~~~g~-~~----~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~a--- 177 (474)
++..+|+|++++ .+ +... +.+++++++++|+.|+++|.||+++..+|++|++ | +..||||+++|++++
T Consensus 90 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~-~--g~~G~Ea~~~g~~~~l~~ 165 (868)
T 2yic_A 90 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQ 165 (868)
T ss_dssp EECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHH
T ss_pred cceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHH
Confidence 455677787776 22 2222 6899999999999999999999999999998875 2 349999999998866
Q ss_pred ---CCCCcEEec-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-C-CCCCCccccCCCC------------CCcccccC
Q 011937 178 ---LSADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISS 237 (474)
Q Consensus 178 ---L~~~D~v~~-~yR~~g~~l~--rG~~~~~~~~el~g~~~~~-~-~Gr~~~~H~~~~~------------~~~~~~sg 237 (474)
|+++|+|++ +||+|+++|+ +|+++.++|+|++|+.+++ + .|+++++|++... +++.+++|
T Consensus 166 ~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s 245 (868)
T 2yic_A 166 CAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPS 245 (868)
T ss_dssp HHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCS
T ss_pred hhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCc
Confidence 558999998 7999999999 9999999999999999877 3 4667899987432 35678899
Q ss_pred CCCCchHHHHHHHHHhhhcc----------CCceEEEEeCCCcc-ccchHHHHHHHHHHcCCC---EEEEEEcCCcceee
Q 011937 238 PIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST 303 (474)
Q Consensus 238 ~lG~~lp~AvGaA~A~k~~~----------~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LP---vIfVv~NN~yaist 303 (474)
+||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.|++| +||||+||+|+|++
T Consensus 246 ~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st 325 (868)
T 2yic_A 246 HLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTT 325 (868)
T ss_dssp STTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTB
T ss_pred cccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccccc
Confidence 99999999999999999865 67899999999996 899999999999999998 99999999999999
Q ss_pred eccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 011937 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383 (474)
Q Consensus 304 ~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~ 383 (474)
+...+.+..++.+++++|||++++|||||+++|++|+++|++++|++++|+|||++|||.+|||++|||+ ||.++|++.
T Consensus 326 ~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~ 404 (868)
T 2yic_A 326 APTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDV 404 (868)
T ss_dssp CHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHH
T ss_pred CccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHH
Confidence 8766666677889999999999999999999999999999999999999999999999999999999986 555677888
Q ss_pred HHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-C-CC-ChhhhcccccCC----CCcCHHHHHHH
Q 011937 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKT-E-KP-AITELFSDVYDV----PPSNLAEQEKQ 456 (474)
Q Consensus 384 w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~-~-~p-~~~~lf~dVy~~----~~~~l~~q~~~ 456 (474)
|++.+||+.+|+++|+++|+||++++++++++++++|++++++|++. | .| ++ .++.++|.. .|....+++++
T Consensus 405 ~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~ 483 (868)
T 2yic_A 405 IDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQR 483 (868)
T ss_dssp HTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHH
Confidence 87678999999999999999999999999999999999999999873 2 22 33 445566652 24445678888
Q ss_pred HHHHHHhCCCCCCCCC
Q 011937 457 LKEIIQTYPQDYPTDV 472 (474)
Q Consensus 457 l~~~l~~~p~~~~~~~ 472 (474)
+.+.+...|+.|..+.
T Consensus 484 ~~~~~~~~p~~~~~~~ 499 (868)
T 2yic_A 484 IGDAHLALPEGFTVHP 499 (868)
T ss_dssp HHHHTTCCCTTCCCCT
T ss_pred HHHhhccCCcccccch
Confidence 8888889999998765
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.2e-60 Score=543.20 Aligned_cols=362 Identities=15% Similarity=0.147 Sum_probs=298.5
Q ss_pred CCeeEEeCCCCC-cc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhc---
Q 011937 106 VPCFRVLDDNGE-LI----KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAA--- 177 (474)
Q Consensus 106 ~p~~rv~~~~g~-~~----~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~a--- 177 (474)
++..+|.|++++ .+ +... +.+++++++++|+.|+++|.||+++..+|++|++. +..||||+++|++++
T Consensus 335 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~---g~~GqEa~~~g~~~~l~~ 410 (1113)
T 2xt6_A 335 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRF---SLEGAETVIPMMDAVIDQ 410 (1113)
T ss_dssp EECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGG---CCTTCTTHHHHHHHHHHH
T ss_pred cceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCChHHHHHHHHHHHHH
Confidence 355678888887 22 2222 68999999999999999999999999999988751 239999999998776
Q ss_pred ---CCCCcEEec-cCcchHHHHH--cCCCHHHHHHHHhcCCCCC-C-CCCCCccccCCCC------------CCcccccC
Q 011937 178 ---LSADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISS 237 (474)
Q Consensus 178 ---L~~~D~v~~-~yR~~g~~l~--rG~~~~~~~~el~g~~~~~-~-~Gr~~~~H~~~~~------------~~~~~~sg 237 (474)
|+++|+|++ +||+|+++|+ +|+++.++|+|++|+.+++ + .|+++++|++... +++.+++|
T Consensus 411 ~~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s 490 (1113)
T 2xt6_A 411 CAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPS 490 (1113)
T ss_dssp HHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCS
T ss_pred hhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCc
Confidence 568999998 7999999999 9999999999999999877 3 4667899987532 35678899
Q ss_pred CCCCchHHHHHHHHHhhhcc----------CCceEEEEeCCCcc-ccchHHHHHHHHHHcCCC---EEEEEEcCCcceee
Q 011937 238 PIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST 303 (474)
Q Consensus 238 ~lG~~lp~AvGaA~A~k~~~----------~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LP---vIfVv~NN~yaist 303 (474)
+||+++|+|+|+|+|.|+++ .+.+++|++|||++ +||.+||+||+|+.|++| +||||+||+|+|+|
T Consensus 491 ~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist 570 (1113)
T 2xt6_A 491 HLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTT 570 (1113)
T ss_dssp STTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTB
T ss_pred cccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCccccc
Confidence 99999999999999999866 57899999999995 899999999999999998 99999999999999
Q ss_pred eccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 011937 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEY 383 (474)
Q Consensus 304 ~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~ 383 (474)
+...+.+..++.+++++|||++++|||||+++|++|+++|++++|++++|+|||++|||.+|||++|||+ ||.+.|++.
T Consensus 571 ~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~~~ 649 (1113)
T 2xt6_A 571 APTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDV 649 (1113)
T ss_dssp CHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHH
T ss_pred CccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHHHH
Confidence 8765655567789999999999999999999999999999999999999999999999999999999986 555677788
Q ss_pred HHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-C-CC-ChhhhcccccCC----CCcCHHHHHHH
Q 011937 384 WKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKT-E-KP-AITELFSDVYDV----PPSNLAEQEKQ 456 (474)
Q Consensus 384 w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~-~-~p-~~~~lf~dVy~~----~~~~l~~q~~~ 456 (474)
|++.+||+.+|+++|+++|+||++++++++++++++|++++++|++. | .| ++ ..+.++|.. .|....+++++
T Consensus 650 ~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~ 728 (1113)
T 2xt6_A 650 IDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQR 728 (1113)
T ss_dssp HTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHH
Confidence 87678999999999999999999999999999999999999999873 2 22 33 445566652 24445678888
Q ss_pred HHHHHHhCCCCCCCCCC
Q 011937 457 LKEIIQTYPQDYPTDVP 473 (474)
Q Consensus 457 l~~~l~~~p~~~~~~~~ 473 (474)
+.+.+...|++|..+.-
T Consensus 729 ~~~~~~~~p~~~~~~~~ 745 (1113)
T 2xt6_A 729 IGDAHLALPEGFTVHPR 745 (1113)
T ss_dssp HHHHTTCCCTTCCCCTT
T ss_pred HHHhhccCCcccccchh
Confidence 99999999999987753
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=5e-60 Score=534.74 Aligned_cols=362 Identities=15% Similarity=0.127 Sum_probs=288.5
Q ss_pred CCeeEEeCCCCC-cccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhh-----
Q 011937 106 VPCFRVLDDNGE-LIKG---SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA----- 176 (474)
Q Consensus 106 ~p~~rv~~~~g~-~~~~---~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~----- 176 (474)
++..+|+|.+|+ .+.+ ...+.+++|+++++|+.|+++|.||+++..+|++||. .++.||||+++|++.
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 467899999998 3322 1146899999999999999999999999999999872 246899999999554
Q ss_pred -cCCCCcEEec-cCcchHHHHH--cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCCC----------CcccccCCCCCc
Q 011937 177 -ALSADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL----------NYITISSPIATQ 242 (474)
Q Consensus 177 -aL~~~D~v~~-~yR~~g~~l~--rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~----------~~~~~sg~lG~~ 242 (474)
+++++|+|++ +||+|+++|+ +|+++.++|+|++|+.++.++|+++++|++.... ++.+++|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 4557999997 8999999999 9999999999999999888778889999985432 345789999999
Q ss_pred hHHHHHHHHHhhhcc-----CCceEEEEeCCCcc-ccchHHHHHHHHHHcCCC---EEEEEEcCCcceee-eccccccCc
Q 011937 243 LPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST-NISEQFRSD 312 (474)
Q Consensus 243 lp~AvGaA~A~k~~~-----~d~vvv~~~GDGa~-~eG~~~EaLn~Aa~~~LP---vIfVv~NN~yaist-~~~~~~~~~ 312 (474)
+|+|+|+|+|.|+++ .+.++||++|||++ ++|++||+||+|+.+++| +||||+||+|+|++ +...+....
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~ 406 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTP 406 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccch
Confidence 999999999999874 77899999999998 899999999999999999 99999999999999 888777778
Q ss_pred CHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHH
Q 011937 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPIN 392 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~ 392 (474)
++++++++|||++++|||+|+++|++|+++|++++|.+++|+|||++|||..||+++|++ .||+++|++.|++.+||+.
T Consensus 407 ~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~-~yr~~~e~~~~~~~~dPi~ 485 (933)
T 2jgd_A 407 YCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEP-SATQPLMYQKIKKHPTPRK 485 (933)
T ss_dssp CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHH
T ss_pred hHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccch-hhCCHHHHHHHHccCCHHH
Confidence 899999999999999999999999999999999999999999999999999999999986 5999999999986579999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCChhhhcccccC------CCCcCHHHHHHHHHHHHHhCC
Q 011937 393 RFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKT-EKPAITELFSDVYD------VPPSNLAEQEKQLKEIIQTYP 465 (474)
Q Consensus 393 r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~-~~p~~~~lf~dVy~------~~~~~l~~q~~~l~~~l~~~p 465 (474)
+|+++|+++|+||++++++++++++++|+++++.|++. |.|.....|..+.. ..|....+.++++.+.+...|
T Consensus 486 ~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p 565 (933)
T 2jgd_A 486 IYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVP 565 (933)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999998873 33321233443321 224444567777777778889
Q ss_pred CCCCCC
Q 011937 466 QDYPTD 471 (474)
Q Consensus 466 ~~~~~~ 471 (474)
+.|.++
T Consensus 566 ~~~~~~ 571 (933)
T 2jgd_A 566 EAVEMQ 571 (933)
T ss_dssp TTSCCC
T ss_pred CCCccc
Confidence 988765
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.8e-31 Score=292.11 Aligned_cols=230 Identities=17% Similarity=0.202 Sum_probs=175.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEe--ccCcchHHHHH
Q 011937 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL--PQYREPGVLLW 196 (474)
Q Consensus 120 ~~~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~--~~yR~~g~~l~ 196 (474)
.+.+.++++.+++.++|+.| |.+...+. +++ .++++++.|++++.+++..+++ ++|+++ ..||++++.+.
T Consensus 16 ~p~d~~~l~~~~l~~l~~~i---R~~~~~~~--~~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l 88 (621)
T 2o1s_A 16 STQELRLLPKESLPKLCDEL---RRYLLDSV--SRS--SGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKIL 88 (621)
T ss_dssp SHHHHTTSCGGGHHHHHHHH---HHHHHHHS--CGG--GCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHT
T ss_pred ChHHhhhCCHHHHHHHHHHH---HHHHHHHH--hhc--CCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHH
Confidence 34445679999999999999 55544333 222 3688899999999999999999 899999 67999999999
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccch
Q 011937 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (474)
Q Consensus 197 rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~ 275 (474)
+|. .++ +..+. . .| +.+.|+...+ .+....+|++|+++|+|+|+|+|.|+++++++|||++|||++++|+
T Consensus 89 ~G~-~~~-~~~~r-~-----~~-g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~ 159 (621)
T 2o1s_A 89 TGR-RDK-IGTIR-Q-----KG-GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGM 159 (621)
T ss_dssp TTT-GGG-GGGTT-S-----TT-SCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHH
T ss_pred hCC-Hhh-hhccc-c-----cC-CCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 997 222 11111 1 11 1234443222 3345568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccC----------------------------------cCH-------
Q 011937 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS----------------------------------DGI------- 314 (474)
Q Consensus 276 ~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~----------------------------------~~i------- 314 (474)
++|+||+|+.+++|+||||+||+|+|++++..+... .++
T Consensus 160 ~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p 239 (621)
T 2o1s_A 160 AFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVP 239 (621)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECC--------------------------------------------------------C
T ss_pred HHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccCh
Confidence 999999999999999999999999999876542210 011
Q ss_pred HHHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 315 VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 315 a~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
..++++|||+++ +|||||+.++++|+++|++ .++|+||+++|+|..||+..
T Consensus 240 ~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 240 GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC
T ss_pred hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChh
Confidence 478999999999 9999999999999999876 57999999999999999854
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.96 E-value=1.7e-28 Score=271.05 Aligned_cols=199 Identities=21% Similarity=0.269 Sum_probs=163.9
Q ss_pred CcE-Eec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHh
Q 011937 181 DDF-ILP-QYRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253 (474)
Q Consensus 181 ~D~-v~~-~yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~ 253 (474)
.|. |++ .|-. ..++...|+ +.+++. .+ .+ .|+..+.|+....+++...+|+||+++|.|+|+|+|.
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~-~~-r~-----~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 132 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLK-QF-RQ-----LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQ 132 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHT-TT-TC-----TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHH-hh-cc-----cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHH
Confidence 354 455 3655 344455665 455432 22 22 2455678887655789999999999999999999999
Q ss_pred hhcc----------CCceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 254 KMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 254 k~~~----------~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
++.+ .+++|+|++|||++++|+++|+||+|+.++|| +|+||+||+|+|++++..+. ..++.+++++||
T Consensus 133 ~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 211 (680)
T 1gpu_A 133 ANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYG 211 (680)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHT
T ss_pred HHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcC
Confidence 8764 47899999999999999999999999999997 99999999999999887665 578999999999
Q ss_pred ceEE-EEeCC-CHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCC---CCCCCHHHHHHHHhcCCHH
Q 011937 323 IRSI-RVDGN-DALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDS---TKYRTLDEIEYWKTERSPI 391 (474)
Q Consensus 323 i~~i-~VDG~-D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~---~~YR~~~E~~~w~~~~DPi 391 (474)
|+++ +|||| |+.++++|+++|++ ..++|+||+++|+|..||+..|++ ..||+++|++.|++ .+++
T Consensus 212 ~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 212 WEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp CEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 9999 99999 99999999999876 357999999999999999977654 67999999999984 4443
No 11
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.96 E-value=3.9e-29 Score=275.05 Aligned_cols=197 Identities=21% Similarity=0.263 Sum_probs=160.7
Q ss_pred cEEec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHhh
Q 011937 182 DFILP-QYRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLK 254 (474)
Q Consensus 182 D~v~~-~yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~k 254 (474)
.+|++ .|-. ..++...|+ +.+++ ..+. + .|...+.|+... .+++...+|+||+++|.|+|+|+|.+
T Consensus 63 r~vls~GH~~~~lYa~l~l~G~~~~~~~l-~~~r-~-----~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 63 RFVLSAGHGSMLLYAVLHLTGYDLPLEEL-KSFR-Q-----WGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp EEEESSGGGHHHHHHHHHHTTCSCCHHHH-TTTT-S-----TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred eEEEeCcchhHHHHHHHHHhCCCCCHHHH-HHhh-c-----cCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 34445 3655 444455665 45543 2222 1 233346676533 36888999999999999999999998
Q ss_pred hcc----------CCceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 255 MEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 255 ~~~----------~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
+.+ .++.|+|++|||++++|+++|+|++|+.++|| +||||+||+|+|++++...+ ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999997 99999999999999988776 6789999999999
Q ss_pred eEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCC----CCHHHHHHHHhcCCHHH
Q 011937 324 RSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKY----RTLDEIEYWKTERSPIN 392 (474)
Q Consensus 324 ~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~Y----R~~~E~~~w~~~~DPi~ 392 (474)
+++ +|||||+.++++|+++|++ .++|+||+++|+|..||+ .+++..| ++++|+++|++ .+|+.
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~~-~~~~~ 282 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRR-NLGWP 282 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHHH-HHTCC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccc-ccccccccccCCCHHHHHHHHH-HcCCC
Confidence 999 9999999999999999876 679999999999999999 5666666 57899999984 66653
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.96 E-value=1.7e-27 Score=262.90 Aligned_cols=221 Identities=19% Similarity=0.215 Sum_probs=172.3
Q ss_pred HhcCcccccccCCchHHHHHHHhhcCCC----------CcEEecc-Ccc---hHHHHHcCC--CHHHHHHHHhcCCCCCC
Q 011937 153 QRQGRFSFYLTTIGEEAINIGSAAALSA----------DDFILPQ-YRE---PGVLLWRGY--TLQQFANQVFANKADDG 216 (474)
Q Consensus 153 ~rqGri~f~~~~~GqEA~~vg~a~aL~~----------~D~v~~~-yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~ 216 (474)
-..|.++-.+++. |.+.+.....|+- |.+|++. |-. ..++...|+ +.+++ ..+. +
T Consensus 24 a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l-~~~r-~----- 94 (673)
T 1r9j_A 24 GKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDL-KGFR-Q----- 94 (673)
T ss_dssp HTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCHHHH-HTTT-S-----
T ss_pred cCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCCCHHHH-Hhhc-c-----
Confidence 3577765444443 4444444434442 3456663 555 234444675 45554 3332 2
Q ss_pred CCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHhhhcc----------CCceEEEEeCCCccccchHHHHHHHHHH
Q 011937 217 KGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAV 285 (474)
Q Consensus 217 ~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~k~~~----------~d~vvv~~~GDGa~~eG~~~EaLn~Aa~ 285 (474)
.|+..+.|+... .+++...+|+||+++|.|+|+|+|.|+.+ .+++|+|++|||++++|++||++++|+.
T Consensus 95 ~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~ 174 (673)
T 1r9j_A 95 DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGH 174 (673)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHH
Confidence 356677888753 36888999999999999999999998765 5889999999999999999999999999
Q ss_pred cCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEE-EEeC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 286 MEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDG-NDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 286 ~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i-~VDG-~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
++|| +|+||+||+|+|++++..++ ..++.+++++|||+++ .||| ||+.+|++|+++|++ ..++|+||+++|+|
T Consensus 175 ~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 175 LALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTI 250 (673)
T ss_dssp HTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred hCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEeccc
Confidence 9996 99999999999999988776 6889999999999999 9999 999999999998875 36799999999999
Q ss_pred CCCCCCCCCC---CCCCCHHHHHHHHh
Q 011937 363 VGHHSTSDDS---TKYRTLDEIEYWKT 386 (474)
Q Consensus 363 ~~gHs~sDd~---~~YR~~~E~~~w~~ 386 (474)
..||+..|.. ..+++++|++.|++
T Consensus 251 g~G~~~~~~~~~H~~~~~~ee~~~~~~ 277 (673)
T 1r9j_A 251 GFGSSKQGTEKVHGAPLGEEDIANIKA 277 (673)
T ss_dssp TTTSTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred ccccccCCCcccccCCCCHHHHHHHHH
Confidence 9999854432 34688999998874
No 13
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.96 E-value=5.7e-30 Score=280.70 Aligned_cols=225 Identities=19% Similarity=0.156 Sum_probs=171.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC-CCcEEeccCcchH---HHHHc
Q 011937 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLWR 197 (474)
Q Consensus 122 ~~~~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~-~~D~v~~~yR~~g---~~l~r 197 (474)
.+..+++.+++.++|+.| |.+...+.. + ..++++++.|+-.+.+++-..++ ++|+++.. |||+ +.+++
T Consensus 20 ~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~ 91 (629)
T 2o1x_A 20 KDLKRLSREQLPALTEEL---RGEIVRVCS--R--GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILT 91 (629)
T ss_dssp HHHTTSCGGGHHHHHHHH---HHHHHHHHT--T--SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHH---HHHHHHHHH--h--cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHh
Confidence 345678999999999999 544333332 2 23688889999555444444458 89999998 9986 66777
Q ss_pred CC-CHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchH
Q 011937 198 GY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (474)
Q Consensus 198 G~-~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~ 276 (474)
|. +.-..+.++.|. +|+.+++. ..+..+.+|++|+++|+|+|+|+|.|+++++++|||++|||++++|++
T Consensus 92 G~~~~~~~~r~~~g~-~G~p~~~~--------s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~ 162 (629)
T 2o1x_A 92 GRRDQMADIKKEGGI-SGFTKVSE--------SEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMA 162 (629)
T ss_dssp TTGGGGGGTTSTTSC-CSSCCGGG--------CTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHH
T ss_pred CcHhHHhCcccCCCC-CCCCCCCC--------CCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHH
Confidence 76 222223333331 12222111 234567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcceeeecccccc--------------------------C---------cC-H------
Q 011937 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQFR--------------------------S---------DG-I------ 314 (474)
Q Consensus 277 ~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~--------------------------~---------~~-i------ 314 (474)
+|+||+|+.+++|+||||+||+|+|++++..+.. . .+ +
T Consensus 163 ~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p 242 (629)
T 2o1x_A 163 LAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDP 242 (629)
T ss_dssp HHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC--------------------------------------------
T ss_pred HHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999887652210 0 02 2
Q ss_pred H--HHHHHcCceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCC
Q 011937 315 V--VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS 367 (474)
Q Consensus 315 a--~~a~ayGi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs 367 (474)
. +++++|||+++ +|||||+.++.+|+++|++ .++|+||+++|++..||+
T Consensus 243 ~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 243 ASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp -CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTTTTCH
T ss_pred ccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecCCCCC
Confidence 3 78999999999 9999999999999988764 579999999999999987
No 14
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.96 E-value=9.8e-28 Score=264.97 Aligned_cols=240 Identities=18% Similarity=0.172 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC--C-------CcE-Eec-cCcc---hHHHHH
Q 011937 131 VAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDF-ILP-QYRE---PGVLLW 196 (474)
Q Consensus 131 ~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~--~-------~D~-v~~-~yR~---~g~~l~ 196 (474)
++.++-..-+|...+|. ......|.++--+++. |.+.+--...|+ | .|. |++ .|-. ..++..
T Consensus 21 ~l~~~a~~~iR~~~~~~--v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l 96 (700)
T 3rim_A 21 EIDSAAVDTIRVLAADA--VQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYL 96 (700)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHH
Confidence 34444323333333433 3333456665433333 444333334665 2 465 445 4666 334445
Q ss_pred cC--CCHHHHHHHHhcCCCCCCCCCCCccccCC-CCCCcccccCCCCCchHHHHHHHHHhhhc-------------cCCc
Q 011937 197 RG--YTLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYSLKME-------------KKDA 260 (474)
Q Consensus 197 rG--~~~~~~~~el~g~~~~~~~Gr~~~~H~~~-~~~~~~~~sg~lG~~lp~AvGaA~A~k~~-------------~~d~ 260 (474)
.| ++.+++ ..+. + .|+..+.|+.. ..+++...+|+||+++|+|+|+|+|.|+. +.++
T Consensus 97 ~G~~~~~~~l-~~fr-~-----~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~ 169 (700)
T 3rim_A 97 GGFGLELSDI-ESLR-T-----WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDH 169 (700)
T ss_dssp TTSSCCHHHH-TTTT-S-----TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCC
T ss_pred hCCCCCHHHH-HHhh-c-----CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCC
Confidence 67 466653 3332 2 35567888864 34688899999999999999999999984 4688
Q ss_pred eEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEE-eCCCHHHHHH
Q 011937 261 CAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYT 338 (474)
Q Consensus 261 vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~V-DG~D~~av~~ 338 (474)
+|+|++|||++++|++|||+|+|+.++|| +|+||+||+|+|++++.... ..++.+++++|||++++| ||||+.+|++
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~ 248 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEE 248 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHH
T ss_pred eEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHH
Confidence 99999999999999999999999999996 99999999999999988654 678999999999999999 9999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCC----CCCCHHHHHHHH
Q 011937 339 AVQAAREMAISEKRPVLVEALTYRVGHHSTSDDST----KYRTLDEIEYWK 385 (474)
Q Consensus 339 A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~----~YR~~~E~~~w~ 385 (474)
|+++|++ ..++|+||+|+|+|..||+...+.. .--+++|++.++
T Consensus 249 Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~ 296 (700)
T 3rim_A 249 AIANAQA---VTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVK 296 (700)
T ss_dssp HHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHH---cCCCCEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHH
Confidence 9999875 3689999999999999998765432 123455665543
No 15
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.95 E-value=3.6e-27 Score=257.95 Aligned_cols=235 Identities=19% Similarity=0.196 Sum_probs=170.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHhhcCC--C-------CcEE-ec-cCcch---
Q 011937 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS--A-------DDFI-LP-QYREP--- 191 (474)
Q Consensus 126 ~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a~aL~--~-------~D~v-~~-~yR~~--- 191 (474)
.+++....+|=+....+|.+=-.+......|.++--+++. |.+.+-....|+ + .|.+ ++ .|-..
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~--e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAA--EIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTH--HHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHH--HHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 4555555555444455565433333333346654322222 333222222332 2 4554 44 35552
Q ss_pred HHHHHcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccC-CceEEEEeCCC
Q 011937 192 GVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDG 269 (474)
Q Consensus 192 g~~l~rG~-~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~-d~vvv~~~GDG 269 (474)
+++...|+ +.++ |..+. + .|++++.|+.....++...+|+||+++|+|+|+|+|.++.+. ++.|||++|||
T Consensus 82 ~~~~l~G~~~~~~-l~~~r-~-----~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG 154 (616)
T 3mos_A 82 AVWAEAGFLAEAE-LLNLR-K-----ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDG 154 (616)
T ss_dssp HHHHHTTSSCGGG-GGGTT-C-----TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETG
T ss_pred HHHHHcCCCCHHH-HHHhc-c-----CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 24445675 4443 22232 1 366788888765667777899999999999999999986555 68999999999
Q ss_pred ccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHh
Q 011937 270 GTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAI 348 (474)
Q Consensus 270 a~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar 348 (474)
++++|+++|+||+|+.++|| +|+|++||+|+|++++......+++.+++++|||++++|||||++++.+|++++
T Consensus 155 ~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~----- 229 (616)
T 3mos_A 155 ELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA----- 229 (616)
T ss_dssp GGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----
T ss_pred ccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----
Confidence 99999999999999999996 889999999999998877776678999999999999999999999999998543
Q ss_pred cCCCcEEEEEEEecCCCCCCCCCCCCC
Q 011937 349 SEKRPVLVEALTYRVGHHSTSDDSTKY 375 (474)
Q Consensus 349 ~~~gPvLIe~~TyR~~gHs~sDd~~~Y 375 (474)
.++|+||+++|+|..||+..+++..|
T Consensus 230 -~~~P~lI~v~T~kg~G~~~~e~~~~~ 255 (616)
T 3mos_A 230 -KHQPTAIIAKTFKGRGITGVEDKESW 255 (616)
T ss_dssp -CSSCEEEEEECCTTTTSTTTTTCSSC
T ss_pred -CCCCEEEEEEEecccccccccCchhh
Confidence 47999999999999999888776544
No 16
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.95 E-value=2.5e-26 Score=253.68 Aligned_cols=245 Identities=19% Similarity=0.225 Sum_probs=179.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchHHHHHHHh-hcCC--C--------CcEEec-cCcc--
Q 011937 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSA-AALS--A--------DDFILP-QYRE-- 190 (474)
Q Consensus 125 ~~l~~e~l~~ly~~M~~~R~~d~~l~~~~rqGri~f~~~~~GqEA~~vg~a-~aL~--~--------~D~v~~-~yR~-- 190 (474)
..++.+++.++ ..-+|...+| +......|.++. +.|.--+.+.+- ..++ | +.+|++ .|-.
T Consensus 9 ~~l~~~~l~~~-a~~iR~~~~~--~v~~a~~GH~g~---~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~ 82 (675)
T 1itz_A 9 KAATGELLEKS-VNTIRFLAID--AVEKANSGHPGL---PMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 82 (675)
T ss_dssp -CCCHHHHHHH-HHHHHHHHHH--HHHHHTCSCCHH---HHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHH
T ss_pred CCCCHHHHHHH-HHHHHHHHHH--HHHHcCCCccCc---cHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHH
Confidence 46888888764 3333444444 333334666543 333322323332 1232 2 344555 3655
Q ss_pred -hHHHHHcCC---CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHhhhcc--------
Q 011937 191 -PGVLLWRGY---TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKMEK-------- 257 (474)
Q Consensus 191 -~g~~l~rG~---~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~k~~~-------- 257 (474)
..++...|+ +.+++ ..+. + .|+..+.|+... .+++...+|+||+++|.|+|+|+|.|+.+
T Consensus 83 lYa~l~l~G~~~~~~~~l-~~~r-~-----~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 83 QYALLHLAGYDSVKEEDL-KQFR-Q-----WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHTCTTCCHHHH-TTTT-S-----TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHcCCCCCCHHHH-Hhcc-c-----CCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 344445665 33442 2222 2 244457787643 36788899999999999999999998776
Q ss_pred --CCceEEEEeCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEE-EEeCC-C
Q 011937 258 --KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDGN-D 332 (474)
Q Consensus 258 --~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i-~VDG~-D 332 (474)
+++.|+|++|||++++|+++|+|++|+.++| |+|+||+||+|+|++++.... ..++.+++++|||+++ +|||| |
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d 234 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTG 234 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTC
T ss_pred CCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCC
Confidence 7899999999999999999999999999999 799999999999999887765 6889999999999999 99999 9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCC----CCCHHHHHHHHh
Q 011937 333 ALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTK----YRTLDEIEYWKT 386 (474)
Q Consensus 333 ~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~----YR~~~E~~~w~~ 386 (474)
+.++++|+++|++ ..++|+||+++|+|..||+...++.. +.+++|++.|++
T Consensus 235 ~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~ 289 (675)
T 1itz_A 235 YDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQ 289 (675)
T ss_dssp HHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHH
Confidence 9999999998875 25799999999999999997555443 467888888763
No 17
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.95 E-value=1.1e-26 Score=256.23 Aligned_cols=195 Identities=24% Similarity=0.329 Sum_probs=158.9
Q ss_pred CcEEecc-Ccc---hHHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHHh
Q 011937 181 DDFILPQ-YRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSL 253 (474)
Q Consensus 181 ~D~v~~~-yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A~ 253 (474)
+.+|++. |-. ..++...|+ +.+++.. + .+ .|+..+.|+... .+++...+|+||+++|.|+|+|+|.
T Consensus 58 Dr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~-~-r~-----~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 58 DRFVLSNGHGSMLIYSLLHLTGYDLPMEELKN-F-RQ-----LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CEEEESSGGGHHHHHHHHHHHTCSCCHHHHTT-T-TS-----TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CeEEEeCccHHHHHHHHHHHcCCCCCHHHHHH-h-hc-----CCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 3455663 655 344444564 5554322 2 22 244446787643 3688899999999999999999999
Q ss_pred hhcc----------CCceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHcC
Q 011937 254 KMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (474)
Q Consensus 254 k~~~----------~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayG 322 (474)
++.+ .++.|+|++|||++++|+++|+|++|+.++|| +|+||+||+|+|++++..+. ..++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8764 47899999999999999999999999999997 99999999999999887664 578999999999
Q ss_pred ceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCC-CCCC---CCCCCHHHHHHHHh
Q 011937 323 IRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHST-SDDS---TKYRTLDEIEYWKT 386 (474)
Q Consensus 323 i~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~-sDd~---~~YR~~~E~~~w~~ 386 (474)
|+++ +|||||+.++++|+++|++ ..++|+||+++|+|..||+. .+++ ..||+++|++.|++
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 9999 9999999999999999876 25799999999999999995 4444 57999999999974
No 18
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.94 E-value=1.5e-26 Score=255.94 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=140.6
Q ss_pred CcE-Eec-cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHH
Q 011937 181 DDF-ILP-QYRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (474)
Q Consensus 181 ~D~-v~~-~yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A 252 (474)
.|. |++ .|-. ..++...|+ +.+++ ..+. + .|+..+.|+... .+++...+|+||+++|.|+|+|+|
T Consensus 98 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l-~~~r-~-----~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 170 (711)
T 3uk1_A 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEEL-KNFR-Q-----LHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALG 170 (711)
T ss_dssp CCEEEECSGGGHHHHHHHHHHHTCSCCHHHH-HTTT-S-----TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHH-Hhhc-c-----ccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHH
Confidence 454 445 3655 233344665 55553 3332 2 244457787542 367888999999999999999999
Q ss_pred hhhccC----------CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHc
Q 011937 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 253 ~k~~~~----------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ay 321 (474)
.++.+. ++.|||++|||++++|+++|+|++|+.++|| +|+||+||+|+|++++..+. ..++.+++++|
T Consensus 171 ~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 249 (711)
T 3uk1_A 171 EALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAY 249 (711)
T ss_dssp HHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHc
Confidence 997653 7899999999999999999999999999997 99999999999999887764 57899999999
Q ss_pred CceEEE-EeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCC----CHHHHHHH
Q 011937 322 GIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYR----TLDEIEYW 384 (474)
Q Consensus 322 Gi~~i~-VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR----~~~E~~~w 384 (474)
||++++ |||||+.++++|+++|++ .++|+||+|+|+|..||+...++..|. +++|++..
T Consensus 250 G~~~~~~vdG~d~~~l~~Al~~A~~----~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~ 313 (711)
T 3uk1_A 250 GWNVIPNVNGHDVDAIDAAIAKAKR----SDKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKT 313 (711)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHTT----CSSCEEEEEEC--------------------CHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEccccccCCCCCCCcccccCCCCCHHHHHHH
Confidence 999999 999999999999988754 689999999999999998766555554 34555554
No 19
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.94 E-value=2.1e-26 Score=253.55 Aligned_cols=193 Identities=23% Similarity=0.283 Sum_probs=147.9
Q ss_pred CcEE-ec-cCcch---HHHHHcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-CCCcccccCCCCCchHHHHHHHHH
Q 011937 181 DDFI-LP-QYREP---GVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (474)
Q Consensus 181 ~D~v-~~-~yR~~---g~~l~rG~--~~~~~~~el~g~~~~~~~Gr~~~~H~~~~-~~~~~~~sg~lG~~lp~AvGaA~A 252 (474)
.|.+ ++ .|-.. .++...|+ +.+++ ..+. + .|+..+.|+... .+++...+|+||+++|+|+|+|+|
T Consensus 59 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l-~~~r-~-----~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 131 (663)
T 3kom_A 59 RDRFVLSNGHGSMLLYSLLHLTGYDLSIEDI-KNFR-Q-----LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALG 131 (663)
T ss_dssp SCEEEECSSSCHHHHHHHHHHHTCSCCHHHH-TTTT-S-----TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHH-Hhhc-c-----CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHh
Confidence 4555 45 46652 23334564 55553 3332 2 244457776543 467888999999999999999999
Q ss_pred hhhccC----------CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHHc
Q 011937 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 253 ~k~~~~----------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~ay 321 (474)
.|+.+. ++.|+|++|||++++|+++|+|++|+.++|| +|+||+||+|+|++++...+ ..++.+++++|
T Consensus 132 ~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (663)
T 3kom_A 132 EKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAY 210 (663)
T ss_dssp HHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHC
Confidence 997653 7899999999999999999999999999997 99999999999999887654 57899999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCC----CHHHHHHH
Q 011937 322 GIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYR----TLDEIEYW 384 (474)
Q Consensus 322 Gi~~i-~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR----~~~E~~~w 384 (474)
||+++ +|||||+.++++|+++|++. .++|+||+++|+|..||+...++..|. +++|++..
T Consensus 211 G~~~~~~vdG~d~~~l~~al~~A~~~---~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~ 275 (663)
T 3kom_A 211 GWHVIENVDGHDFVAIEKAINEAHSQ---QQKPTLICCKTVIGFGSPEKAGTASVHGSPLSDQERASA 275 (663)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHC---SSSCEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEEecccccccCCCCCCccccCCCCCHHHHHHH
Confidence 99999 99999999999999887652 579999999999999998765544332 45666554
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.94 E-value=1.6e-25 Score=245.20 Aligned_cols=207 Identities=20% Similarity=0.266 Sum_probs=159.9
Q ss_pred hcCcccccccCCchHHHHHHHhhcCC---------CCcEEec--cCcc---hHHHHHcCC--CHHHHHHHHhcCCCCCCC
Q 011937 154 RQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILP--QYRE---PGVLLWRGY--TLQQFANQVFANKADDGK 217 (474)
Q Consensus 154 rqGri~f~~~~~GqEA~~vg~a~aL~---------~~D~v~~--~yR~---~g~~l~rG~--~~~~~~~el~g~~~~~~~ 217 (474)
..|.++. +.|---+.+.+...|+ +.|.++. .|-. ..++...|+ +.+++ ..+. + .
T Consensus 25 ~~GH~g~---~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l-~~~r-~-----~ 94 (632)
T 3l84_A 25 NSGHPGA---PLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDL-KNFR-Q-----L 94 (632)
T ss_dssp TCSCCHH---HHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHH-TTTT-C-----T
T ss_pred CCCCCCc---ChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHH-HHHh-c-----C
Confidence 3555542 3333333344455564 3465554 3666 445555675 55553 3332 2 2
Q ss_pred CCCCccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccC-------CceEEEEeCCCccccchHHHHHHHHHHcCCC-
Q 011937 218 GRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP- 289 (474)
Q Consensus 218 Gr~~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~-------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP- 289 (474)
|+..+.|+....+++...+|+||+++|.|+|+|+|.++.+. ++.|+|++|||++++|+++|+|++|+.++||
T Consensus 95 ~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~ 174 (632)
T 3l84_A 95 HSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDN 174 (632)
T ss_dssp TCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTT
T ss_pred CCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCc
Confidence 44456777654578889999999999999999999998754 8999999999999999999999999999996
Q ss_pred EEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCC
Q 011937 290 VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTS 369 (474)
Q Consensus 290 vIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~s 369 (474)
+|+|++||+|+|++++.... ..++.+++++|||++++|||||+.++.+|+++|++ .++|+||+++|+|..||+..
T Consensus 175 livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~----~~~P~lI~v~T~kG~G~~~~ 249 (632)
T 3l84_A 175 FILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKPCLIIAKTTIAKGAGEL 249 (632)
T ss_dssp EEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHT----CSSCEEEEEECCTTTTCGGG
T ss_pred EEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHh----CCCCEEEEEeeEeeecCCCC
Confidence 99999999999999887654 57899999999999999999999999999988764 68999999999999999876
Q ss_pred CCCCCC
Q 011937 370 DDSTKY 375 (474)
Q Consensus 370 Dd~~~Y 375 (474)
.++..|
T Consensus 250 e~~~~~ 255 (632)
T 3l84_A 250 EGSHKS 255 (632)
T ss_dssp TTCGGG
T ss_pred CCcccc
Confidence 554433
No 21
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.94 E-value=3.6e-25 Score=244.46 Aligned_cols=195 Identities=25% Similarity=0.336 Sum_probs=154.1
Q ss_pred CCcE-Eec-cCcch---HHHHHcC--CCHHHHHHHHhcCCCCCCCCCCCccccCC-CCCCcccccCCCCCchHHHHHHHH
Q 011937 180 ADDF-ILP-QYREP---GVLLWRG--YTLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAY 251 (474)
Q Consensus 180 ~~D~-v~~-~yR~~---g~~l~rG--~~~~~~~~el~g~~~~~~~Gr~~~~H~~~-~~~~~~~~sg~lG~~lp~AvGaA~ 251 (474)
+.|. |++ .|-.. .++...| ++.+++ ..+. + .|+..+.|+.. ..+++...+|+||+++|.|+|+|+
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l-~~~r-q-----~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~Al 154 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDL-KNFR-Q-----WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAM 154 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHHH-TTTT-C-----TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHHH-Hhhc-c-----CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHH
Confidence 3565 445 35542 3444466 456653 3232 1 35556778764 346888899999999999999999
Q ss_pred HhhhccC----------CceEEEEeCCCccccchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccccccCcCHHHHHHH
Q 011937 252 SLKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 252 A~k~~~~----------d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LP-vIfVv~NN~yaist~~~~~~~~~~ia~~a~a 320 (474)
|.|+.+. ++.|+|++|||++++|+++|+|++|+.++|| +|+|++||+|+|++++.... ..++.+++++
T Consensus 155 A~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a 233 (690)
T 3m49_A 155 AERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKA 233 (690)
T ss_dssp HHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHH
T ss_pred HHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHH
Confidence 9987653 8899999999999999999999999999996 99999999999999886553 5789999999
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCC----CHHHHHHHH
Q 011937 321 YGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYR----TLDEIEYWK 385 (474)
Q Consensus 321 yGi~~i~V-DG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR----~~~E~~~w~ 385 (474)
|||++++| ||||+.++.+|+++|++ ..++|+||+|+|+|..|++...++..|. +.+|++..+
T Consensus 234 ~G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~ 300 (690)
T 3m49_A 234 YGWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTK 300 (690)
T ss_dssp HTCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred cCCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccccCCCCCHHHHHHHH
Confidence 99999999 99999999999887764 2579999999999999998766655443 456666554
No 22
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.93 E-value=6.4e-25 Score=247.71 Aligned_cols=249 Identities=14% Similarity=0.138 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchHHHHHHHhhcCC------CCcEEecc-Ccc---hHHH
Q 011937 129 KEVAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALS------ADDFILPQ-YRE---PGVL 194 (474)
Q Consensus 129 ~e~l~~ly~~M~~~R~~d~~l~~~~r----qGri~f~~~~~GqEA~~vg~a~aL~------~~D~v~~~-yR~---~g~~ 194 (474)
+.++.+-+..-+|...++........ .|.++.+++.. |...++....++ ++|+|+.. |-. .+++
T Consensus 74 d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~ 151 (886)
T 2qtc_A 74 NLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARA 151 (886)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHH
Confidence 33555345566666666555432111 46665544444 555555555577 57888885 555 3446
Q ss_pred HHcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCC-CC-cccccCCCCCchHHHHHHHHHhhh-------ccCCceEEEE
Q 011937 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAY 265 (474)
Q Consensus 195 l~rG~~~~~~~~el~g~~~~~~~Gr~~~~H~~~~~-~~-~~~~sg~lG~~lp~AvGaA~A~k~-------~~~d~vvv~~ 265 (474)
+..|.-.++-|..+.. . ..+.+++.|+.... ++ +.+.+|++|+++++|+|+|+|.|+ ++.++.|||+
T Consensus 152 ~l~Gr~~~e~l~~fRq-~---~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~av 227 (886)
T 2qtc_A 152 FLEGRLTQEQLDNFRQ-E---VHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAF 227 (886)
T ss_dssp HHTTSSCHHHHTTBTC-C---TTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred HHhCCCCHHHHHhccC-C---CCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEE
Confidence 6678533333343332 1 12456777765432 34 778899999999999999999998 7789999999
Q ss_pred eCCCccccchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc-cCcCHHHHHHHcCceEEEE---------------
Q 011937 266 TGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRV--------------- 328 (474)
Q Consensus 266 ~GDGa~~eG~~~EaLn~Aa~~~L-PvIfVv~NN~yaist~~~~~~-~~~~ia~~a~ayGi~~i~V--------------- 328 (474)
+|||++++|+++||||+|+.++| ++||||+||+++|++++.... ...++.++++++||++++|
T Consensus 228 iGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~ 307 (886)
T 2qtc_A 228 LGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTS 307 (886)
T ss_dssp EETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSS
T ss_pred ECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCc
Confidence 99999999999999999999999 599999999999999887642 3467899999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHHhcCCCcE
Q 011937 329 ------------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPV 354 (474)
Q Consensus 329 ------------------------------------------------------DG~D~~av~~A~~~A~~~ar~~~gPv 354 (474)
||||+.+|++|+++|++. .++|+
T Consensus 308 ~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~Pt 384 (886)
T 2qtc_A 308 GKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKAT 384 (886)
T ss_dssp CHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCE
T ss_pred hHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCE
Confidence 799999999999999873 46899
Q ss_pred EEEEEEecCCCCCC--CCCCC----CCCCHHHHHHHHh
Q 011937 355 LVEALTYRVGHHST--SDDST----KYRTLDEIEYWKT 386 (474)
Q Consensus 355 LIe~~TyR~~gHs~--sDd~~----~YR~~~E~~~w~~ 386 (474)
||+++|+|..||+. .++.. .|++.+|++.|++
T Consensus 385 lI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 422 (886)
T 2qtc_A 385 VILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422 (886)
T ss_dssp EEEEECCTTTTCTTCC-------------CHHHHHHHH
T ss_pred EEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHH
Confidence 99999999999973 22222 3788888888873
No 23
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.90 E-value=7.2e-24 Score=230.92 Aligned_cols=164 Identities=16% Similarity=0.249 Sum_probs=129.5
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceee----------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST---------- 303 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist---------- 303 (474)
..++||.++|.|+|+++|. +++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 3588999999999999884 57889999999999876 566999999999988888777 588622
Q ss_pred eccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE---ecCCCCCCCCCCCCCCCHH-
Q 011937 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT---YRVGHHSTSDDSTKYRTLD- 379 (474)
Q Consensus 304 ~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T---yR~~gHs~sDd~~~YR~~~- 379 (474)
.........++++++++||+++++|| ++.++.+++++|++ .+.+||+|||++| ||..+|.+.||+..||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADI 567 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHH
Confidence 11223345689999999999999999 66788888877762 1478999999999 6667899999999998655
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHcCCCCHHHH
Q 011937 380 -EIEYWKTERSPINRFRNWVERQGWWSEQEE 409 (474)
Q Consensus 380 -E~~~w~~~~DPi~r~r~~L~~~G~~te~e~ 409 (474)
++.+|. ..||+.+|++||.++|+|++++.
T Consensus 568 ~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 568 EAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 566665 48999999999999999998765
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.65 E-value=4.9e-16 Score=173.50 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=123.1
Q ss_pred CccccCCCCCCcccccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccch---HHHHHHHHHHcCC-CEEEEEEc
Q 011937 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAAVMEA-PVVFICRN 296 (474)
Q Consensus 221 ~~~H~~~~~~~~~~~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~---~~EaLn~Aa~~~L-PvIfVv~N 296 (474)
.|+|+...-+++...+|+||+++++|+|+|+ ++++..|+|++|||+.++|. .||+.+++..+++ +||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 8999865557899999999999999999995 46788999999999999999 9999999999999 79999999
Q ss_pred CCcceeeecccc-ccCcCHHHHHHHcCceEE-EEeC-C--CHHHHHHHHHHHHH-----------HHhc--CCCc--EEE
Q 011937 297 NGWAISTNISEQ-FRSDGIVVKGRAYGIRSI-RVDG-N--DALAVYTAVQAARE-----------MAIS--EKRP--VLV 356 (474)
Q Consensus 297 N~yaist~~~~~-~~~~~ia~~a~ayGi~~i-~VDG-~--D~~av~~A~~~A~~-----------~ar~--~~gP--vLI 356 (474)
|++.|+.++... .+.+++.++.++|||.++ .||| | |+.++.+++.+|++ .||+ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999998643 356789999999999999 9999 9 99999999876663 2444 3689 999
Q ss_pred EEEEecCC
Q 011937 357 EALTYRVG 364 (474)
Q Consensus 357 e~~TyR~~ 364 (474)
.++|.+..
T Consensus 315 i~rT~kG~ 322 (845)
T 3ahc_A 315 IFRTPKGW 322 (845)
T ss_dssp EEECCTTT
T ss_pred EEECcccC
Confidence 99999998
No 25
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.62 E-value=7.5e-16 Score=167.35 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=101.5
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecccc-----
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQ----- 308 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~~----- 308 (474)
..|+||.++|.|+|+++|. +++.|||++|||+++++ .++|++|+++++|+++||.|| +|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 3689999999999999984 57889999999999876 588999999999977777555 79887543211
Q ss_pred ----ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 309 ----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 309 ----~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
....++.+++++||+++++|+ +++++.+++++|++.+|. ++|+|||++|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 234689999999999999998 789999999999986654 78999999999854
No 26
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.61 E-value=5.8e-16 Score=168.90 Aligned_cols=122 Identities=22% Similarity=0.246 Sum_probs=100.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------- 306 (474)
..|++|+++|.|+|+|+|. +++.|||++|||+++++ .++|++|+.+++|+++||.|| +|++.....
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 513 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDY 513 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4689999999999999985 57899999999999875 568999999999976666555 688753211
Q ss_pred -------c--ccc----CcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 307 -------E--QFR----SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 307 -------~--~~~----~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
. ... ..++.+++++||+++++|+ +++++.+++++|++++++.++|+|||++|+|..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 514 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp SCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred cccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 0 111 2689999999999999998 789999999999987777789999999999865
No 27
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.59 E-value=1.2e-15 Score=164.60 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=97.5
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------c
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------E 307 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-------~ 307 (474)
.|+||+++|.|+|+++|.| ++++.|||++|||+++++ .++|++|+.+++|+++||.|| +|++..... .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999976 578899999999999876 467999999999976666555 788765421 1
Q ss_pred c----ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 Q----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ~----~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ....++.+++++||+++++|+ ++.++.+++++|++ .++|+|||++|++
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 1 134689999999999999998 78999999988875 5899999999974
No 28
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.58 E-value=1.2e-15 Score=163.27 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=94.7
Q ss_pred CCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc--------
Q 011937 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE-------- 307 (474)
Q Consensus 237 g~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~~-------- 307 (474)
|+||+++|.|+|+++|. +++.|||++|||++.++ +++|++|+.+++|+++||.|| +|++.+....
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 89999999999999984 46789999999999877 688999999999988888666 5888654311
Q ss_pred --cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 --~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 1134689999999999999999 66788777776664 6899999999976
No 29
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.58 E-value=6.5e-16 Score=166.60 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=98.6
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc------c
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------E 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------~ 307 (474)
..|+||+++|.|+|+|+|.+.++.++.|||++|||+++++ +++|++|+.+++|+++||.|| +|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 4689999999999999999888888999999999999764 577999999999977777555 698854321 1
Q ss_pred cccCcCHHHHHHHcCce---EEEEeCCCHHHHHHHHH-HHHHHHhcCCCcEEEEEEEec
Q 011937 308 QFRSDGIVVKGRAYGIR---SIRVDGNDALAVYTAVQ-AAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ~~~~~~ia~~a~ayGi~---~i~VDG~D~~av~~A~~-~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++.+++++||++ +++|+ +.+++.++++ +|++ ..++|+|||++|++
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 12346899999999999 99999 7888888887 6653 23479999999976
No 30
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.57 E-value=1.7e-15 Score=163.74 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=96.6
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------- 306 (474)
..|+||.++|.|+|+++|. +++.|||++|||+++++ .++|++|+.+++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 3589999999999999984 47899999999999864 467999999999977777666 688765321
Q ss_pred --ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 307 --~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|.
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~ 544 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDYR 544 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 12334689999999999999998 67888888888875 68999999999873
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.57 E-value=2.6e-15 Score=162.44 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=96.0
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-------- 305 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|+.+++|+++||.|| +|++....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 3589999999999999985 47889999999999875 468999999999976666555 68876542
Q ss_pred -c--ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 306 -S--EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 306 -~--~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
. ......++.+++++||+++++|+ +..++.+++++|++ .++|+|||++|+|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334689999999999999998 88898888887764 6899999999998
No 32
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.56 E-value=8.2e-15 Score=157.70 Aligned_cols=118 Identities=27% Similarity=0.305 Sum_probs=94.0
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------- 306 (474)
..|+||.++|.|+|+++|. +++.|||++|||++.++ .++|++|+.+++|+++||.|| +|++.....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 3589999999999999984 57889999999999765 577999999999966665555 687643211
Q ss_pred --ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 307 --~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
......++.+++++||+++++|+ +++++.+++++|++ .+||+|||++|.+..
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~ 531 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 11234689999999999999997 78888888888875 589999999998754
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.55 E-value=4.7e-15 Score=163.86 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=96.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-----c-
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E- 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-----~- 307 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|+.+++|+++||.|| +|++..... .
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~ 584 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 584 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCC
Confidence 3589999999999999984 68899999999999863 456999999999976666555 688754321 1
Q ss_pred ----cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 308 ----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 308 ----~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
.....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|..
T Consensus 585 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 585 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKV 639 (677)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSC
T ss_pred cccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCc
Confidence 1234689999999999999998 88999999988875 579999999999854
No 34
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.55 E-value=2.5e-15 Score=163.13 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=97.3
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~-------- 306 (474)
.|+||+++|.|+|+++|. +++.|||++|||++.++ .++|++|+.+++|+++||.|| +|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 589999999999999984 57889999999999875 588999999999977766555 588765331
Q ss_pred -ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 307 -~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
......++.+++++||+++++|+ +..++.+++++|++ .++|+|||++|+|...
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 550 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSKTQG 550 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCSSSS
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCCC
Confidence 22335689999999999999998 66788888888875 4799999999998643
No 35
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.54 E-value=1.3e-14 Score=157.56 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=96.6
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS------- 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv-~NN~yaist~~~------- 306 (474)
..|++|+++|.|+|+++|. +++.|||++|||++.++ .++|++|+.+++|+++|| +||+|++.....
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 497 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 497 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999985 47889999999999875 468999999999976666 455788754211
Q ss_pred ---ccc--------cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Q 011937 307 ---EQF--------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGH 365 (474)
Q Consensus 307 ---~~~--------~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~g 365 (474)
... ...++.+++++||+++++|+ ++.++.+++++|++ .++|+|||++|+|...
T Consensus 498 ~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 498 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQEH 561 (590)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTCC
T ss_pred cccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCcc
Confidence 001 13589999999999999998 78999998888875 5899999999998653
No 36
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.54 E-value=6e-15 Score=159.25 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=95.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc----cc
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNISE----QF 309 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv-~NN~yaist~~~~----~~ 309 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|+.+++|+++|| +||+|++...... ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 3689999999999999984 57899999999999864 467999999999966555 5558988765431 22
Q ss_pred cCcCHHHHHHHcCc-----eEEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEEec
Q 011937 310 RSDGIVVKGRAYGI-----RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEALTYR 362 (474)
Q Consensus 310 ~~~~ia~~a~ayGi-----~~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~TyR 362 (474)
...++.+++++||+ ++++|+ +..++.+++++|++ . ++|+|||++|+|
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~----~~~gp~liev~~~~ 533 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKA----NTRGPTLIECQIDR 533 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHh----cCCCcEEEEEEeCc
Confidence 34689999999999 999998 78999999888875 4 799999999986
No 37
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.53 E-value=9.7e-15 Score=157.73 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=94.4
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEE-cCCcceeeecc------c
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS------E 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~-NN~yaist~~~------~ 307 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|+.+++|+++||. ||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 4689999999999999984 57899999999999864 4679999999999666665 55898765322 1
Q ss_pred cccCcCHHHHHHHcCce-----EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 QFRSDGIVVKGRAYGIR-----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ~~~~~~ia~~a~ayGi~-----~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++.+++++||++ +++|+ +..++.++++++. ++.++|+|||++|+|
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 12346899999999999 89998 7889888888752 346789999999986
No 38
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.52 E-value=1.5e-14 Score=156.17 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=95.9
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc----cc
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNISE----QF 309 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv-~NN~yaist~~~~----~~ 309 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|++|..+++|+++|| +||+|++...... ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 3689999999999999984 57899999999999863 566999999999966555 5568988754431 22
Q ss_pred cCcCHHHHHHHcCc---------eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 310 RSDGIVVKGRAYGI---------RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 310 ~~~~ia~~a~ayGi---------~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
...++.+++++||+ ++++|+ +..++.+++++|++. .++|+|||++|+|
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 34689999999999 999998 789999999888762 2799999999986
No 39
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.52 E-value=9.2e-15 Score=157.95 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=94.6
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEE-cCCcceeeecc-----ccc
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS-----EQF 309 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~-NN~yaist~~~-----~~~ 309 (474)
.|+||.++|.|+|+|+|. +++.|||++|||++. +..++|++|+.+++|+++||. ||+|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 589999999999999985 577899999999998 456889999999999666665 55688754321 123
Q ss_pred cCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcE-EEEEEEec
Q 011937 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV-LVEALTYR 362 (474)
Q Consensus 310 ~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPv-LIe~~TyR 362 (474)
...++.+++++||+++++|+ +.+++.+++++|++ .++|+ |||++|+|
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 45689999999999999998 78999999888875 46898 99999986
No 40
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.51 E-value=6.7e-15 Score=158.21 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=93.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc------c
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------E 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~~------~ 307 (474)
..|+||+++|.|+|+++|. +++.|||++|||+++++ .++|.+|+.+++|+++||.|| +|++..... .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 3689999999999999984 47889999999999753 577999999999976666555 698864321 1
Q ss_pred cccCcCHHHHHHHcCc----eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 QFRSDGIVVKGRAYGI----RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 ~~~~~~ia~~a~ayGi----~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++.+++++||+ ++++|+ +..++.+++++|+ +.++|+|||++|++
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 2234689999999999 999998 7888888887765 36899999999986
No 41
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.51 E-value=2.5e-14 Score=154.52 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=95.1
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-c-ceeeec--ccc--
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AISTNI--SEQ-- 308 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-y-aist~~--~~~-- 308 (474)
..|+||+++|.|+|+++| +++.|||++|||++++. .++|++|+++++|+++||.||+ | .+.... ...
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 496 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 496 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCC
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcc
Confidence 458899999999999997 56789999999999753 5779999999999888888776 3 443211 000
Q ss_pred ---ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 309 ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 309 ---~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
....++.+++++||+++++|+ +..++.+++++|++ .++|+|||++|+|.
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 497 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp TTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred cCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 334689999999999999998 89999999998875 47899999999874
No 42
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.49 E-value=4e-14 Score=152.66 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=94.8
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-c-ceeeec---cc--
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AISTNI---SE-- 307 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-y-aist~~---~~-- 307 (474)
..|++|+++|.|+|+++| +++.|||++|||++++. .++|++|+++++|+++||.||+ | ++.... ..
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 468999999999999997 57789999999999764 4669999999999888887776 3 543211 00
Q ss_pred ----cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 308 ----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 308 ----~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
.....++.+++++||+++++|+ +++++.+++++|++ .++|+|||++|.|..
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~ 546 (564)
T 2q28_A 492 SPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPAA 546 (564)
T ss_dssp CTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTS
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 1124689999999999999998 78999999998875 478999999998754
No 43
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.46 E-value=3.7e-14 Score=152.93 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=86.3
Q ss_pred ccCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-------c
Q 011937 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-------S 306 (474)
Q Consensus 235 ~sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~-------~ 306 (474)
..|++|+ +|.|+|+++| +++.|||++|||++... .++|++|+.+++|+++||.||+ |++.... .
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 486 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERE 486 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHH
Confidence 3456666 9999999998 36789999999999753 4569999999999888887775 5654321 1
Q ss_pred ---ccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 307 ---~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
......++.++|++||+++++|+ +.+++.+++++|++ .++|+|||++|.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 539 (556)
T 3hww_A 487 RFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAWR----TPTTTVIEMVVND 539 (556)
T ss_dssp --CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHTT----SSSEEEEEEECCS
T ss_pred HhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCc
Confidence 11235689999999999999998 77888777776654 6899999999865
No 44
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.44 E-value=2.7e-14 Score=155.42 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=90.8
Q ss_pred cCCCCCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEE-cCCcceeeeccc-------
Q 011937 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNISE------- 307 (474)
Q Consensus 236 sg~lG~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~-NN~yaist~~~~------- 307 (474)
.+.+|.++|.|+|+++|. ++.|||++|||+++++ + ++|++|+.+++|+++||. ||+|++......
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 357899999999999983 6789999999999875 3 569999999999777665 558887432210
Q ss_pred -----cccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 308 -----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 308 -----~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
.....++.+++++||+++++|+ +.+++.+++++|+ +.++|+|||++|+|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 0124589999999999999998 7888877777665 36899999999865
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.40 E-value=1.7e-13 Score=148.52 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=79.0
Q ss_pred CCchHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-ccc---------
Q 011937 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-SEQ--------- 308 (474)
Q Consensus 240 G~~lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN-~yaist~~-~~~--------- 308 (474)
|+++|.|+|+|+ +++.|||++|||+++.. .++|++|+++++|+++||.|| +|++.... ..+
T Consensus 439 ~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~ 510 (578)
T 3lq1_A 439 DGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF 510 (578)
T ss_dssp SSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhc
Confidence 346999999963 37889999999999743 466999999999988888777 67775421 000
Q ss_pred --ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEec
Q 011937 309 --FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYR 362 (474)
Q Consensus 309 --~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR 362 (474)
....++.++|++||+++++|+ +.+++.+++++|++ .++|+|||+.|.|
T Consensus 511 ~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 560 (578)
T 3lq1_A 511 GTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNR 560 (578)
T ss_dssp ----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC---
T ss_pred cCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCc
Confidence 123589999999999999998 88888888877764 6899999999876
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.70 E-value=9.4e-08 Score=111.74 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=76.9
Q ss_pred CceEEEEeCCC-ccccchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc----------------cccCcCHHHHHHH
Q 011937 259 DACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE----------------QFRSDGIVVKGRA 320 (474)
Q Consensus 259 d~vvv~~~GDG-a~~eG~~~EaLn~Aa~~~LPvIfVv~NN~-yaist~~~~----------------~~~~~~ia~~a~a 320 (474)
++.|||+.||| ++..|. .+|.+|..+++||++||.||+ |+....... .....|+.+.|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 788773 469999999999888888775 554321110 0122589999999
Q ss_pred cCceEEEEe-C-CCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC
Q 011937 321 YGIRSIRVD-G-NDALAVYTAVQAAREMAISEKRPVLVEALTYRV 363 (474)
Q Consensus 321 yGi~~i~VD-G-~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~ 363 (474)
||++++++. - .++.++.+++++|++ .+||+||++.+-..
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc
Confidence 999999643 3 489999999999987 58999999988665
No 47
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.60 E-value=0.22 Score=53.38 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-........ ......+.....+.+--.
T Consensus 63 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~ 135 (573)
T 2iht_A 63 AADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKY 135 (573)
T ss_dssp HHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHH---HCCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhhE
Confidence 45555544 34455677777888775 566788888889999999976644322110 112234677788888878
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...|. +++++...+++|+..|..+. |||.|++-.
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (573)
T 2iht_A 136 AVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPV 170 (573)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 88887 88889999999999888876 999998754
No 48
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.28 E-value=0.22 Score=53.55 Aligned_cols=107 Identities=25% Similarity=0.243 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-....... ..+...+.....+.+--
T Consensus 64 ~~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~k 135 (590)
T 1ybh_A 64 FAAEGYARS---SGKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITK 135 (590)
T ss_dssp HHHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHH---HCCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHhC
Confidence 356666554 34556777888888776 45678888889999999986553321111 11223467778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
....|. +++++..++++|+..|+.+. |||.|++-.
T Consensus 136 ~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 136 HNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 788887 88899999999999888774 899998743
No 49
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.23 E-value=0.24 Score=53.02 Aligned_cols=106 Identities=19% Similarity=0.100 Sum_probs=73.8
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-....... ......+.....+.+--.
T Consensus 63 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~ 134 (566)
T 1ozh_A 63 MAAAVGRI---TGKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAK--QVHQSMDTVAMFSPVTKY 134 (566)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSE
T ss_pred HHHHHHHH---HCCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCC--CcccccCHHHHHHHHhhe
Confidence 45565554 34455677777888886 45667788888999999996654322111 111224677788888888
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...|. +++++...+++|+..|..+. |||.|++-.
T Consensus 135 ~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~ 169 (566)
T 1ozh_A 135 AIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQ 169 (566)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 88887 88889899999998888874 999998744
No 50
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.02 E-value=0.29 Score=52.20 Aligned_cols=106 Identities=21% Similarity=0.159 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccC-cCHHHHHHHcCc
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS-DGIVVKGRAYGI 323 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~-~~ia~~a~ayGi 323 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-....... ..+.. .+.....+.+--
T Consensus 56 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~--~~~Q~~~d~~~~~~~~tk 127 (563)
T 2uz1_A 56 AAEGYARA---GAKLGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDET--NTLQAGIDQVAMAAPITK 127 (563)
T ss_dssp HHHHHHHH---HTSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTS--CCTTCCCCHHHHHGGGCS
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCc--hhhhhhccHHHHhhhhhc
Confidence 45666554 34455677777878886 44567778888999999997654322111 11222 467778888887
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...+|. +++++...+.+|+..|..+. |||.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 163 (563)
T 2uz1_A 128 WAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPW 163 (563)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred eEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCH
Confidence 888887 88889999999998888876 999998743
No 51
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.88 E-value=0.35 Score=51.95 Aligned_cols=105 Identities=20% Similarity=0.145 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-......... .....+... ++.+--.
T Consensus 58 ~A~GyAr~---tg~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~~Q~~d~~~-~~~~tk~ 129 (589)
T 2pgn_A 58 MVNGYNYV---KDRSAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSE-AAQQVPWQS-FTPIARS 129 (589)
T ss_dssp HHHHHHHH---HTSCCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTT-CSSCCCGGG-GTTTSSE
T ss_pred HHHHHHHH---HCCCEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCC-cccccChhh-ccccEEE
Confidence 45566554 35567899999999997 4567888888999999998765432211110 111224455 6666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~ 359 (474)
..+|. +++++...+.+|+..|..++ |||.|++-
T Consensus 130 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (589)
T 2pgn_A 130 TQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIP 163 (589)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred EeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeC
Confidence 77776 88889999999999888876 99999774
No 52
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=92.19 E-value=0.4 Score=51.20 Aligned_cols=108 Identities=19% Similarity=0.115 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---ccc---ccCcCHHHH
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQ---FRSDGIVVK 317 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~---~~~---~~~~~ia~~ 317 (474)
-+|.|.|.+ .+ -.+++|..|=|+++ ..-++.-|...++|||+|+-+-........ ... ....+....
T Consensus 55 ~~A~Gyar~---tg-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (566)
T 2vbi_A 55 FSAEGYARS---NG-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEM 127 (566)
T ss_dssp HHHHHHHHH---HS-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHH
T ss_pred HHHHHHHhh---cC-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHH
Confidence 356666554 34 55666666888775 556677788899999999976543211000 000 011256677
Q ss_pred HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 318 a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.+.+--....|. +++++...+++|+..|..+.|||.|++-.
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 128 ARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred HhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 888877888886 56666677777777777677999999854
No 53
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.06 E-value=0.46 Score=50.69 Aligned_cols=108 Identities=18% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeee---cccc---ccCcCHHHH
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---ISEQ---FRSDGIVVK 317 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~---~~~~---~~~~~ia~~ 317 (474)
-+|.|.|.+ .+ -.+++|..|=|+++ ..-++.-|...++|||+|+-+-....... .... ....+....
T Consensus 55 ~~A~Gyar~---tg-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (568)
T 2wvg_A 55 FSAEGYARA---KG-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEM 127 (568)
T ss_dssp HHHHHHHHH---HS-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHH
T ss_pred HHHHHHHHh---hC-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHH
Confidence 356666654 34 56677777888775 55677778889999999997654322100 0000 011256677
Q ss_pred HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 318 a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.+.+--....|. +++.+...+.+|+..|..+.|||.|++-.
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 168 (568)
T 2wvg_A 128 AKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIAC 168 (568)
T ss_dssp HTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred HHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 777777788887 77777778888887777778999999854
No 54
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.97 E-value=0.32 Score=51.86 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-...........+...+.....+.+--.
T Consensus 60 ~A~Gyar~---tg~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 133 (564)
T 2q28_A 60 AAAASGFL---TQKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKA 133 (564)
T ss_dssp HHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHH---hCCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhe
Confidence 45666654 34445677777777775 5667778888899999999765432111001112223666778888778
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...|. +++.+...+++|+..|..+ .|||.|++-
T Consensus 134 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 167 (564)
T 2q28_A 134 AFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLP 167 (564)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 88887 7778888899999888874 599999764
No 55
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.78 E-value=0.38 Score=52.88 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|-.-++|||+|+-+-...... ...+...+.....+.+--.
T Consensus 135 aAdGyAr~---tGkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g--~~a~Q~~Dq~~i~~~~tk~ 206 (677)
T 1t9b_A 135 MAEGYARA---SGKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIG--TDAFQEADVVGISRSCTKW 206 (677)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTT--SCCTTCCCHHHHTGGGSSE
T ss_pred HHHHHHHH---HCCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcC--CCCccccCHHHHhhhheeE
Confidence 46666654 35556788888888886 4566778888899999998654322111 1112223566677777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...|. +++.+...+++|+..|..+ .|||+|++-
T Consensus 207 ~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 207 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 77887 8889999999999988887 589999885
No 56
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=91.70 E-value=0.36 Score=51.41 Aligned_cols=105 Identities=15% Similarity=-0.012 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-....-. ...+...+.....+.+--.
T Consensus 56 ~A~GyAr~---tg~~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~~--~~~~Q~~d~~~~~~~~tk~ 127 (549)
T 3eya_A 56 AAGAEAQL---SGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIG--SGYFQETHPQELFRECSHY 127 (549)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGTT--SCCTTCCCHHHHTSTTCSE
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhcC--CCCCCccCHHHHHhhhhhe
Confidence 45566554 34556777788888886 4567888888999999999654321100 0111123566666666667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
...|. +++.+...+.+|+..|....||+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 128 CELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 77776 7778888888888888888899999874
No 57
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.34 E-value=0.4 Score=51.28 Aligned_cols=108 Identities=20% Similarity=0.128 Sum_probs=67.4
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc---ccccCcC-HHHHHHH
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS---EQFRSDG-IVVKGRA 320 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~---~~~~~~~-ia~~a~a 320 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-......... .+....+ .....+.
T Consensus 74 ~A~GyAr~---tgkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 74 AADAAARY---SSTLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHH---HTSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred HHHHHHHH---hCCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence 46666554 34455677777888776 4567878888999999999764322111000 0001112 5566777
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
+--....|. +++++...+.+|+..|..+.|||.|++-.
T Consensus 148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 185 (565)
T 2nxw_A 148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPR 185 (565)
T ss_dssp SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECCh
Confidence 766777776 66666666777776666667999999863
No 58
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=91.24 E-value=0.21 Score=51.28 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeeccccccCcCHHHHHH--
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGR-- 319 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~~~~~~~~~ia~~a~-- 319 (474)
+.+|+|++++ + .+.++...|.|-.. ..+.|..++..++|+|+++-+....- ..+...+. ++.+..+.-
T Consensus 77 ~~~a~Gaa~a----G-~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~-sd~~~~~~~~~ 147 (395)
T 1yd7_A 77 IAAAIGASWA----G-AKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQ-GDIMQAIWGTH 147 (395)
T ss_dssp HHHHHHHHHT----T-CCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC--------------------------
T ss_pred HHHHHHHHHh----C-CcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccch-hHHHHHHhccC
Confidence 5667777765 3 45677777888764 34556667788899999887764321 11111111 111222222
Q ss_pred -HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEe
Q 011937 320 -AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTY 361 (474)
Q Consensus 320 -ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~Ty 361 (474)
.+|++++... ++.+++..+..|.+.+++.+.||++....+
T Consensus 148 g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~~~ 188 (395)
T 1yd7_A 148 GDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTDAE 188 (395)
T ss_dssp -CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEECHH
T ss_pred CCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcchh
Confidence 2468888776 899999999999988888889999987654
No 59
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.18 E-value=0.35 Score=51.63 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-...........+...+.....+.+--.
T Consensus 62 ~A~GyAr~---tg~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 135 (568)
T 2c31_A 62 AASIAGYI---EGKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA 135 (568)
T ss_dssp HHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe
Confidence 45566554 34445777777777775 5667888888999999999765432111000112223566677777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...|. +++.+...+.+|+..|..+ .|||.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (568)
T 2c31_A 136 SFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 169 (568)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 77886 7788888899999888874 589999763
No 60
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=91.08 E-value=0.35 Score=52.08 Aligned_cols=108 Identities=21% Similarity=0.098 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|++ .+.-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ..+...+.....+.+--
T Consensus 57 ~~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~~~~~~~tk 128 (590)
T 1v5e_A 57 MAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNM--DAFQELNQNPMYDHIAV 128 (590)
T ss_dssp HHHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCHHHHHTTCS
T ss_pred HHHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCC--CcccccCHHHHHHhhcc
Confidence 345555544 34455677777888776 45567778888999999997654322111 11112356677777776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEEecC
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALTYRV 363 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~TyR~ 363 (474)
....|. ++.++...+++|+..|..++ |||+| ...+.
T Consensus 129 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l--iP~dv 165 (590)
T 1v5e_A 129 YNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE--VPGDF 165 (590)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE--EETTG
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE--Eccch
Confidence 777886 88888899999998888887 99999 44454
No 61
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=89.82 E-value=0.39 Score=51.84 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeeccccccCcCHHHHHHHcCc
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya-ist~~~~~~~~~~ia~~a~ayGi 323 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|..-++|||+|+-+-... +.. ..+...+....++.+--
T Consensus 65 aA~GyAr~---tg~~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~---~~~Q~~d~~~~~~~~tk 135 (603)
T 4feg_A 65 AAAADAKL---TGKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM---DTFQEMNENPIYADVAD 135 (603)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS---CCTTCCCCGGGGTTTCS
T ss_pred HHHHHHHH---hCCceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCC---CccccccHHHHhhhhce
Confidence 45566554 35556777778888886 4467888888999999998543221 111 11111244455566666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEAL 359 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~ 359 (474)
....|. +++.+...+.+|+..|....||+.|++-
T Consensus 136 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 136 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 667776 5566677777777666666899999873
No 62
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=88.94 E-value=1.4 Score=47.80 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCccee--eeccccccCcCHHHHHHHc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS--TNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yais--t~~~~~~~~~~ia~~a~ay 321 (474)
..|+|+|+ .|..+++++.++++.. -.++.+.+++..++||++++..-+++.. .++. .+..+++-...--
T Consensus 369 ~~a~G~A~----~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~~iP 439 (616)
T 3mos_A 369 SIAVGCAT----RNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFRSVP 439 (616)
T ss_dssp HHHHHHHG----GGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHHTST
T ss_pred HHHHHHHH----cCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhcCCC
Confidence 34444444 3544567788999875 3567788888999999999887776433 3322 2333444333333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
|+.++.-. |+.++..+++.|.+ .++|++|-.
T Consensus 440 ~l~V~~P~--d~~e~~~~l~~a~~----~~gp~~ir~ 470 (616)
T 3mos_A 440 TSTVFYPS--DGVATEKAVELAAN----TKGICFIRT 470 (616)
T ss_dssp TEEEECCC--SHHHHHHHHHHHHT----CCSEEEEEC
T ss_pred CCEEEecC--CHHHHHHHHHHHHh----cCCCEEEEE
Confidence 55555444 88888888888775 478987743
No 63
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=88.87 E-value=0.79 Score=48.78 Aligned_cols=108 Identities=11% Similarity=0.019 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCccee---eecc---ccccCcCHHHH
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS---TNIS---EQFRSDGIVVK 317 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yais---t~~~---~~~~~~~ia~~ 317 (474)
-+|.|.|.+. + -.+++|..|=|+++ ..-++..|..-++|||+|+-+-..... .... ......+....
T Consensus 56 ~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~ 128 (563)
T 2vk8_A 56 YAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRM 128 (563)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHH
T ss_pred HHHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHH
Confidence 3566666553 4 44677777888876 456677888889999999965432210 0000 00011235667
Q ss_pred HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 318 a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.+.+--....|. +++.+...+.+|+..|..+.|||.|++-.
T Consensus 129 ~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 129 SANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp HHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred hhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 777777778886 65556666666666665566999998743
No 64
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=88.75 E-value=0.5 Score=50.94 Aligned_cols=107 Identities=14% Similarity=0.070 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|-.-++|||+|+-+-.........-| ..+.....+.+--.
T Consensus 84 aA~GyAr~---tgkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 155 (604)
T 2x7j_A 84 FALGLAKA---KQRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKF 155 (604)
T ss_dssp HHHHHHHH---HTSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSC
T ss_pred HHHHHHHh---hCCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheee
Confidence 45566554 35556777778888886 456688888889999999966543211111111 22344455555555
Q ss_pred EEEEeCCCHHH-------HHHHHHHHHHHHhcC-CCcEEEEEEEe
Q 011937 325 SIRVDGNDALA-------VYTAVQAAREMAISE-KRPVLVEALTY 361 (474)
Q Consensus 325 ~i~VDG~D~~a-------v~~A~~~A~~~ar~~-~gPvLIe~~Ty 361 (474)
...|. ++++ +...+++|+..|..+ .|||.|++-..
T Consensus 156 ~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 156 FTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp EEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 66665 3333 777888888888774 59999998643
No 65
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=88.51 E-value=0.92 Score=49.24 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce-eeeccccccCcCHHHHHHHc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai-st~~~~~~~~~~ia~~a~ay 321 (474)
+.+|+|+|++ | -++++.++++... =.+-+-++.++..++||++++.+.++.- ..++..+ ..+++-...--
T Consensus 374 ~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~~~iP 444 (621)
T 2o1s_A 374 VTFAAGLAIG----G-YKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYLRCIP 444 (621)
T ss_dssp HHHHHHHHHT----T-CEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHTTTST
T ss_pred HHHHHHHHHC----C-CEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHHhcCC
Confidence 4466666664 3 5677888888753 2344457778889999999998877621 2333322 23333333223
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
|+.++.-- |+.+++.+++.|++. .++|++|-.
T Consensus 445 ~l~v~~P~--d~~e~~~~l~~a~~~---~~~Pv~i~~ 476 (621)
T 2o1s_A 445 EMVIMTPS--DENECRQMLYTGYHY---NDGPSAVRY 476 (621)
T ss_dssp TCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 77777765 999999999999873 378999854
No 66
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=88.45 E-value=1.4 Score=47.50 Aligned_cols=106 Identities=23% Similarity=0.228 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+. .++-.++++..|=|+++ ..-++..|..-++|+|+|+-+-....... ..+...+....++.+--.
T Consensus 80 ~A~GyAr~t--gg~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~~--~~~Q~~d~~~~~~~~tk~ 152 (616)
T 2pan_A 80 MAEGYTRAT--AGNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLHK--EDFQAVDIEAIAKPVSKM 152 (616)
T ss_dssp HHHHHHHHS--TTCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHhc--CCCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCc--ccccccCHHHHHHHHHHh
Confidence 455665542 02334556677888776 35667788888999999986654322111 112234677788888777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Q 011937 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEAL 359 (474)
Q Consensus 325 ~i~VDG~D~~av~~A~~~A~~~ar~~-~gPvLIe~~ 359 (474)
...|. ++..+..++++|+..|..+ .|||.|++-
T Consensus 153 ~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP 186 (616)
T 2pan_A 153 AVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLP 186 (616)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcc
Confidence 78886 7888999999999888876 489999874
No 67
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=88.24 E-value=1.5 Score=48.09 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+++|+|+|+. +.-++++.++.+-.. ...+++.+++..++||+|+....+++. ..++. .+..+++-...-
T Consensus 416 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 486 (663)
T 3kom_A 416 AAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRLI 486 (663)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhcC
Confidence 4556666653 345667777766543 235678888999999999987777654 34443 223344443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.++.-- |..++..+++.|++ ..++|++|-
T Consensus 487 Pnl~V~~Pa--d~~e~~~~l~~A~~---~~~~Pv~ir 518 (663)
T 3kom_A 487 PNLSVWRPA--DTIETMIAWKEAVK---SKDTPSVMV 518 (663)
T ss_dssp TTCEEECCC--SHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred CCcEEEeeC--CHHHHHHHHHHHHH---hCCCCEEEE
Confidence 466666555 88899888888886 247899984
No 68
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=87.10 E-value=1.2 Score=47.42 Aligned_cols=107 Identities=15% Similarity=0.060 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cc--cc-cCcCHHHH
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SE--QF-RSDGIVVK 317 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~---~~--~~-~~~~ia~~ 317 (474)
-+|.|.|.+ .+ -.++++..|=|+++ ..-++..|..-++|+|+|+-+......... .. +. ...+....
T Consensus 77 ~~A~GyAr~---tG-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
T 2vbf_A 77 YMADGYART---KK-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKM 149 (570)
T ss_dssp HHHHHHHHH---HS-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHH
T ss_pred HHHHHHHHH---hC-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHH
Confidence 356666655 34 45677777888775 456777888889999999976543221100 00 00 11124566
Q ss_pred HHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 318 a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
++.+--....|. + ..+...+++|+..|..+.|||.|++-.
T Consensus 150 ~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~ 189 (570)
T 2vbf_A 150 HEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPV 189 (570)
T ss_dssp TGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEH
T ss_pred hhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcch
Confidence 677777777776 4 566666677766666667999999854
No 69
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=86.96 E-value=2.4 Score=46.41 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+++|+|+|+. +.-+++++.+...+. -..+++..++..++||++++...+++. ..++. ....+++-...-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 3455565553 334556666655443 235668889999999999998887764 33443 223444443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.++.-- |..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~Pa--d~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRPC--DQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHh---CCCcEEEE
Confidence 477666554 889999999999862 37899984
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=86.62 E-value=0.69 Score=48.80 Aligned_cols=108 Identities=19% Similarity=0.053 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi 323 (474)
-+|.|.|.+ .+.-.+++|..|=|+++ ..-++.-|...++|||+|+-+-.........-|. ..+.....+.+--
T Consensus 52 ~~A~Gyar~---tg~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k 124 (528)
T 1q6z_A 52 GIADGYAQA---SRKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVK 124 (528)
T ss_dssp HHHHHHHHH---HTSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCS
T ss_pred HHHHHHHHH---hCCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhH
Confidence 356666654 34455667777888875 4566777888899999998654322111101111 0144444555544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEE
Q 011937 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEALT 360 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~A~~~ar~~~-gPvLIe~~T 360 (474)
...+|. +++++...+.+|+..|..+. |||.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (528)
T 1q6z_A 125 WSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPY 160 (528)
T ss_dssp CEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred hhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 556665 67777888888888887765 799998854
No 71
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=86.39 E-value=2.4 Score=46.38 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCccee--eeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS--TNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yais--t~~~~~~~~~~ia~~a~a 320 (474)
+++|+|+|+. |.-++++..+.=.+. -.++++.+++..++|||+++.+.+++.. .++. ....+++-...-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 3456666654 434566665533321 2456688899999999999988887643 3443 233445443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
-|+.++.-- |..++..+++.|++. .++|++|-.
T Consensus 481 P~l~V~~Pa--d~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 481 PNLFVIRPA--DAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 477777655 899999999999873 368998864
No 72
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=85.31 E-value=1 Score=48.20 Aligned_cols=108 Identities=11% Similarity=0.114 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++..|-.-++|||+|.-+-...... ...+...+....++.+--.
T Consensus 64 aAdGyAr~---tG~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g--~~~~Qe~d~~~~~~~~tk~ 135 (578)
T 3lq1_A 64 FALGLAKA---SKRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRN--VGAPQAMDQLHLYGSHVKD 135 (578)
T ss_dssp HHHHHHHH---HCCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTT--SSCTTCCCCTTTTGGGSSE
T ss_pred HHHHHHHh---hCCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhc--CCCCCCcCHhhHHhhheee
Confidence 45566654 35556777788888886 4567888888999999999543221100 0111112344445555445
Q ss_pred EEEEe-CCCHHH----HHHHHHHHHHHHhcC-CCcEEEEEEE
Q 011937 325 SIRVD-GNDALA----VYTAVQAAREMAISE-KRPVLVEALT 360 (474)
Q Consensus 325 ~i~VD-G~D~~a----v~~A~~~A~~~ar~~-~gPvLIe~~T 360 (474)
...|. ..++.+ +..++++|+..|..+ .|||.|++-.
T Consensus 136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 56664 344332 445777777777776 5999999853
No 73
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=85.16 E-value=3 Score=45.73 Aligned_cols=101 Identities=17% Similarity=0.094 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhcc-CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 244 PQAVGVAYSLKMEK-KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 244 p~AvGaA~A~k~~~-~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
++|+|+|+ .| .-++++.++...+. -.++++..++..++|||+++...+++. .+++. ....+++-...-
T Consensus 428 ~~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 498 (675)
T 1itz_A 428 AICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRAM 498 (675)
T ss_dssp HHHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHSS
T ss_pred HHHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhccC
Confidence 34555544 34 24566666655443 356778889999999999997777653 33443 223444433322
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
-|+.++.- -|..++..+++.|++. .++|++|-.
T Consensus 499 P~l~V~~P--ad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 499 PNILMLRP--ADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp SSCEEECC--CSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred CCeEEEEC--CCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 35555544 4889999999988862 378999953
No 74
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=85.03 E-value=2.8 Score=46.20 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+.+|+|+|+. +.-++++..|.--+. -...++.+++..++||+|++...+++. ..++. .+..+++-...-
T Consensus 440 v~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~TH--q~ied~a~lr~i 510 (690)
T 3m49_A 440 GAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTH--EPIEQLAALRAM 510 (690)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCcc--CCHHHHHHHhcC
Confidence 4456666654 334455554432221 123457788999999999999887643 34444 233445443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.+++-- |..++..+++.|++. .++|++|-
T Consensus 511 Pnl~V~~Pa--d~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 511 PNVSVIRPA--DGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 477766655 889999999998872 36899984
No 75
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=84.96 E-value=1.5 Score=43.73 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhhhccCCceEEEE-eCCCccccchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccccCc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFRSD 312 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~-~GDGa~~eG~~~EaLn-~Aa~--------~~LPvIfVv~NN~yaist~~~~~~~~~ 312 (474)
+..|+|+|++ | -++++++ ++++.. ..++.+. .++. +++|||+++.+.+ +...++. .+..
T Consensus 65 ~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th--~s~~ 133 (338)
T 1qs0_B 65 VGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQT--HSQS 133 (338)
T ss_dssp HHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSS--SSCC
T ss_pred HHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCccc--cccc
Confidence 5567777765 3 3444444 888873 2344443 3442 3599999987655 3333332 2223
Q ss_pred CHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 313 ~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
+++-...-.||.++.-- |+.+.+..++.|.+ .++|++|-
T Consensus 134 d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~----~~~Pv~i~ 172 (338)
T 1qs0_B 134 PEAMFTQVCGLRTVMPS--NPYDAKGLLIASIE----CDDPVIFL 172 (338)
T ss_dssp CHHHHTTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----cCCcEEEE
Confidence 44433333488888766 99999999999986 37899984
No 76
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=84.46 E-value=1.1 Score=48.61 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeeccccccCcCHHHHHHHc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya-ist~~~~~~~~~~ia~~a~ay 321 (474)
+.+|+|+|++ | -++++.++.+... =.+-+.++.++..++||++++.+.++. -..++..+ ..+++-...--
T Consensus 377 ~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~iP 447 (629)
T 2o1x_A 377 VTTAAGMALQ----G-MRPVVAIYSTFLQ--RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSIP 447 (629)
T ss_dssp HHHHHHHHHT----T-CEEEEEEEHHHHG--GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTST
T ss_pred HHHHHHHHHc----C-CEEEEEecHHHHH--HHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHccC
Confidence 4466666664 3 4667777777543 234445677888999999999877752 12333322 23333322224
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
|+.++.-- |+.+++.+++.|++. ++|++|-.
T Consensus 448 ~l~v~~P~--d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 448 GVRIGLPK--DAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp TCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred CcEEEecC--CHHHHHHHHHHHHhC----CCCEEEEe
Confidence 77777655 999999999999973 68999854
No 77
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=84.08 E-value=2.8 Score=46.10 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhhccCCc-eEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 244 PQAVGVAYSLKMEKKDA-CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~-vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
++|+|+|+. |.-+ +++..+..-+. -.++++.+++..++||+|++...+++. ..++. .+..+++-...-
T Consensus 423 g~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~i 493 (680)
T 1gpu_A 423 AIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRSL 493 (680)
T ss_dssp HHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcCC
Confidence 456666554 4335 55565533322 235668889999999999997777664 34444 233444443333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.++.-- |..++..+++.|++. .++|++|-
T Consensus 494 P~l~V~~Pa--d~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 494 PNIQVWRPA--DGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSCEEECCC--SHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHh---CCCcEEEE
Confidence 466666544 889999999998862 37899984
No 78
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=83.71 E-value=3.8 Score=44.73 Aligned_cols=100 Identities=14% Similarity=-0.031 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+++|+|+|+. +.-++++.+|..-+. .....+.+++..++||+|+....+++. ..++. .+..+++-...-
T Consensus 395 v~~a~GlA~~----gG~~P~~~~f~~F~~---~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 465 (632)
T 3l84_A 395 AAINNAFARY----GIFLPFSATFFIFSE---YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRAM 465 (632)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHHS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhcC
Confidence 3456666654 344566666654432 345677788899999999998777653 34443 233445444333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.++.-- |..++..+++.|++ .++|++|-
T Consensus 466 P~l~V~~P~--d~~e~~~~l~~A~~----~~~Pv~ir 496 (632)
T 3l84_A 466 PNFLTFRPA--DGVENVKAWQIALN----ADIPSAFV 496 (632)
T ss_dssp SSCEEECCS--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 477777655 88999999999987 57899885
No 79
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=83.30 E-value=2.7 Score=42.22 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhccCCceEEE-EeCCCccccchHHHHHHHHH---------HcCCCEEEEEEcCCc-ceeeeccccccC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVA-YTGDGGTSEGDFHAALNFAA---------VMEAPVVFICRNNGW-AISTNISEQFRS 311 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~-~~GDGa~~eG~~~EaLn~Aa---------~~~LPvIfVv~NN~y-aist~~~~~~~~ 311 (474)
+..|+|+|++ | -++++. .+++... ..++.+...+ ..++||++++.+ ++ +-..++..+ ..
T Consensus 75 v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~-~~ 144 (341)
T 2ozl_B 75 AGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ-CF 144 (341)
T ss_dssp HHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC-CC
T ss_pred HHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh-HH
Confidence 4566666664 3 345554 3888873 2345454433 278999999986 53 223333322 11
Q ss_pred cCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 011937 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEA 358 (474)
Q Consensus 312 ~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~ 358 (474)
+ +-...--||.++.-- |+.+.+.+++.|++ .++|++|-.
T Consensus 145 e--a~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~~ 183 (341)
T 2ozl_B 145 A--AWYGHCPGLKVVSPW--NSEDAKGLIKSAIR----DNNPVVVLE 183 (341)
T ss_dssp H--HHHHTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred H--HHhccCCCCEEEEeC--CHHHHHHHHHHHHh----cCCCEEEEE
Confidence 1 222222377777665 99999999999886 368998854
No 80
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=82.18 E-value=2.1 Score=45.22 Aligned_cols=108 Identities=14% Similarity=0.058 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeee---cc---ccccCcCHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---IS---EQFRSDGIVV 316 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~---~~---~~~~~~~ia~ 316 (474)
.-+|.|.|++. + -.++++..|=|+++ ..-++.-|..-++|+|+|+-+-....... .. ......+..+
T Consensus 56 ~~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~ 128 (552)
T 1ovm_A 56 SYAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 128 (552)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHH
Confidence 34567777663 3 34777778888775 35567788889999999997644321100 00 0001113455
Q ss_pred HHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 317 ~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
.++.+--....|. + ..+...+++|+..|..+.|||.|++-.
T Consensus 129 ~~~~~tk~~~~v~--~-~~~~~~i~~A~~~a~~~~GPV~l~iP~ 169 (552)
T 1ovm_A 129 MSEPITVAQAVLT--E-QNACYEIDRVLTTMLRERRPGYLMLPA 169 (552)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHTCCEEEEEEH
T ss_pred HHHhheeEEEEEc--c-ccHHHHHHHHHHHHHhCCCCEEEEeeh
Confidence 6677777777886 4 455555566655555556999998854
No 81
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=81.52 E-value=5.9 Score=43.41 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHHc
Q 011937 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAY 321 (474)
Q Consensus 244 p~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~ay 321 (474)
++|+|+|+. |.-++++.++..-+. -..+++..++..++|||+++...+++. .+++. .+..+++-...--
T Consensus 416 ~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP 486 (673)
T 1r9j_A 416 AILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAMP 486 (673)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHST
T ss_pred HHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCCC
Confidence 355565543 434556666543332 234668888999999999987777654 34443 2234444443334
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
|+.++.-- |..++..+++.|++. .++|++|-
T Consensus 487 ~l~V~~Pa--d~~e~~~~l~~a~~~---~~~Pv~i~ 517 (673)
T 1r9j_A 487 NLQVIRPS--DQTETSGAWAVALSS---IHTPTVLC 517 (673)
T ss_dssp TCEEECCS--SHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred CCEEEeCC--CHHHHHHHHHHHHHh---CCCeEEEE
Confidence 66666544 888999999998862 37899984
No 82
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=80.53 E-value=5.6 Score=43.98 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+++|+|+|+. +.-++++.++. .|.+ .....+.+++..++||+|+....+++. ..++. .+..+++-...-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHhcC
Confidence 4566676652 23445555553 2332 234567778889999999998777643 34443 233444433333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
-|+.++.-- |..++..+++.|++ .++|++|-
T Consensus 532 Pnl~V~~Pa--d~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWRPA--DTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 366666554 88899999999886 57999984
No 83
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=79.00 E-value=7 Score=39.61 Aligned_cols=97 Identities=16% Similarity=-0.015 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhhhccCCceEEEE-eCCCccccchHHHHH-HHHHHc--------CCCEEEEEEcCCcceeeeccccccCc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAAL-NFAAVM--------EAPVVFICRNNGWAISTNISEQFRSD 312 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~-~GDGa~~eG~~~EaL-n~Aa~~--------~LPvIfVv~NN~yaist~~~~~~~~~ 312 (474)
+..|.|+|++ | -++++.+ +++... ..++.+ +-++.. ++|||+++.+.+..-..+.. ...
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~h---s~~ 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYH---SNS 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCccc---ccc
Confidence 4566676664 3 3455544 898763 233434 334543 99999999877633222222 122
Q ss_pred CHHHHHHH-cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 313 GIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 313 ~ia~~a~a-yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
+. ....+ -||.++.-- |+.+.+.+++.|++ .++|++|-
T Consensus 180 ~~-a~l~~iPnl~V~~Ps--d~~e~~~ll~~A~~----~~~Pv~i~ 218 (369)
T 1ik6_A 180 PE-AIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFL 218 (369)
T ss_dssp HH-HHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred HH-HHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 22 33333 377777665 99999999999886 57899984
No 84
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=78.92 E-value=7 Score=38.60 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhhccCCceEEEE-eCCCccccchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccccCc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFRSD 312 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~-~GDGa~~eG~~~EaLn-~Aa~--------~~LPvIfVv~NN~yaist~~~~~~~~~ 312 (474)
+..|+|+|++ | -++++.+ +++... ..++.+. -++. .++|+|+++. .++....... ....
T Consensus 64 v~~a~G~A~~----G-~~p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~~ 132 (324)
T 1umd_B 64 VGAALGMAAH----G-LRPVAEIQFADYIF---PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH--HSQS 132 (324)
T ss_dssp HHHHHHHHHH----T-CEEEEECSSGGGCG---GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG--SSCC
T ss_pred HHHHHHHHHC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc--cchh
Confidence 5567777765 3 3445544 888863 2344453 2343 6899999887 3443322222 2223
Q ss_pred CHHHHHHH-cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 313 GIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 313 ~ia~~a~a-yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
++ ..... -|+.++.-- |+.+.+..++.|++ .++|++|-
T Consensus 133 ~~-a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 133 PE-AHFVHTAGLKVVAVS--TPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CH-HHHHTSTTCEEEECC--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred HH-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 44 33333 377777665 99999999999986 57899884
No 85
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=72.18 E-value=4.3 Score=43.07 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCce
Q 011937 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (474)
Q Consensus 245 ~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~ 324 (474)
+|.|.|.+ .+.-.+++|..|=|+++ ..-++..|-.-++|||+|.-+-......... +...|.....+.+--.
T Consensus 61 ~AdGyAr~---tG~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~~--~Q~~d~~~~~~~~tk~ 132 (556)
T 3hww_A 61 LALGLAKV---SKQPVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCGA--NQAIRQPGMFASHPTH 132 (556)
T ss_dssp HHHHHHHH---HCSCEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSSC--TTCCCCTTTTTTCSSE
T ss_pred HHHHHHHh---hCCCEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccCC--CccccHHHHHhhheeE
Confidence 45566544 35556778888988886 4567888888999999998654332111101 1112334444444445
Q ss_pred EEEEe-CC---CHHHHHHHHHHHHHHHhcCCCcEEEEEEE
Q 011937 325 SIRVD-GN---DALAVYTAVQAAREMAISEKRPVLVEALT 360 (474)
Q Consensus 325 ~i~VD-G~---D~~av~~A~~~A~~~ar~~~gPvLIe~~T 360 (474)
...|. .. ....+.+++++|+. ....|||.|++-.
T Consensus 133 ~~~v~~~~~~~~~~~i~~~i~~A~~--~~r~GPV~i~iP~ 170 (556)
T 3hww_A 133 SISLPRPTQDIPARWLVSTIDHALG--TLHAGGVHINCPF 170 (556)
T ss_dssp EEECCCCCTTSCHHHHHHHHHHHHH--SCCSSCEEEEEEC
T ss_pred EEecCCCcccccHHHHHHHHHHHHh--cCCCCCEEEeCCc
Confidence 55554 21 23457788888873 1235899999853
No 86
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=71.52 E-value=12 Score=41.30 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcce--eeeccccccCcCHHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yai--st~~~~~~~~~~ia~~a~a 320 (474)
+.+|.|+|+. +.-++++..|.. |+. ....++.+++..++||+|+....+++. +.++. .+..+++-...-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 3455666654 333445543322 211 123357788999999999998777653 34444 233455544433
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHHhcCC--CcEEEE
Q 011937 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEK--RPVLVE 357 (474)
Q Consensus 321 yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~--gPvLIe 357 (474)
-|+.++.-- |..++..+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~Pa--d~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVRPA--DANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEeCC--CHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 477766655 888999999988863 34 799985
No 87
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=71.02 E-value=9.1 Score=44.97 Aligned_cols=107 Identities=16% Similarity=0.096 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcc---eeeeccccccCcCHHHHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA---ISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya---ist~~~~~~~~~~ia~~a~ 319 (474)
+.+++|++++ +..+++.+--.+++ ...|.|-.++-..+|+|+++-+-... ++.... + .++. -++
T Consensus 67 ~~aaiGAa~a------GaR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~-h---sd~~-~ar 133 (1231)
T 2c42_A 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIFGD-H---QDIY-AAR 133 (1231)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCC-S---HHHH-TTT
T ss_pred HHHHHHHHHc------CChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCc-h---hhHH-HHh
Confidence 5678888776 23445554333333 34577755555678988888877642 221111 1 1111 245
Q ss_pred HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC
Q 011937 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVG 364 (474)
Q Consensus 320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~ 364 (474)
..|++++.-. ++.+.+.-+..|.+.+.+..-||++-..++|..
T Consensus 134 ~~G~~vl~ps--s~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~s 176 (1231)
T 2c42_A 134 QTGFAMLASS--SVQEAHDMALVAHLAAIESNVPFMHFFDGFRTS 176 (1231)
T ss_dssp TSSCEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTT
T ss_pred cCCcEEEECC--CHHHHHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 5687776655 899999999999888888889999988887764
No 88
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=70.72 E-value=8 Score=38.19 Aligned_cols=97 Identities=11% Similarity=-0.030 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhccCCceEEEE-eCCCccccchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccccCc
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFRSD 312 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~-~GDGa~~eG~~~EaLn-~Aa~--------~~LPvIfVv~NN~yaist~~~~~~~~~ 312 (474)
+..|+|+|++ | -++++++ ++++.. ..++.+. -++. .++|+|+++. .++....... ....
T Consensus 63 v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~~ 131 (324)
T 1w85_B 63 GGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--HSDS 131 (324)
T ss_dssp HHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--SSCC
T ss_pred HHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--cccc
Confidence 5567777664 3 3444444 888863 2344453 2343 6899999986 3443322221 2223
Q ss_pred CHHHHHHH-cCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 313 GIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 313 ~ia~~a~a-yGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
+. ....+ -|+.++.-- |+.+.+..++.|.+ .++|++|-
T Consensus 132 ~~-a~~~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~ 170 (324)
T 1w85_B 132 LE-GLVAQQPGLKVVIPS--TPYDAKGLLISAIR----DNDPVIFL 170 (324)
T ss_dssp CH-HHHTTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred HH-HHHccCCCCEEEeeC--CHHHHHHHHHHHHH----cCCCEEEE
Confidence 33 33333 366666655 99999999999986 57899884
No 89
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=69.29 E-value=21 Score=31.97 Aligned_cols=90 Identities=17% Similarity=0.057 Sum_probs=53.3
Q ss_pred CCchHHHHHHHHHhhhcc-CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccc-----------
Q 011937 240 ATQLPQAVGVAYSLKMEK-KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISE----------- 307 (474)
Q Consensus 240 G~~lp~AvGaA~A~k~~~-~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~~----------- 307 (474)
|+.+..|+-.|+..-... ....+|+++.||..+.+...+.+..+...+++|..|-.-+.-+...|...
T Consensus 91 ~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~ 170 (218)
T 3ibs_A 91 GTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGN 170 (218)
T ss_dssp SCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSC
T ss_pred CCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCC
Confidence 344555555554322122 34578999999999877777878877777777666654432111111000
Q ss_pred ----cccCcCHHHHHHHcCceEEEEe
Q 011937 308 ----QFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 308 ----~~~~~~ia~~a~ayGi~~i~VD 329 (474)
......+...|..-|..++.++
T Consensus 171 ~~~~~~~~~~L~~iA~~~gG~~~~~~ 196 (218)
T 3ibs_A 171 VIVTRLNEGMCQEIAKDGKGIYVRVD 196 (218)
T ss_dssp BCEECCCHHHHHHHHHHTEEEEEEEC
T ss_pred EeEecCCHHHHHHHHHhcCCEEEECC
Confidence 1112236677888888888887
No 90
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=69.07 E-value=9.8 Score=37.96 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhccCCceEEEE-eCCCccccchHHHHHH-HHHH--------cCC-CEEEEEEcCCcceeeeccccccC
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEA-PVVFICRNNGWAISTNISEQFRS 311 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~-~GDGa~~eG~~~EaLn-~Aa~--------~~L-PvIfVv~NN~yaist~~~~~~~~ 311 (474)
+..|+|+|++ | -++++.+ ++++.. -.++.+. .++. .++ |||+++...+. ...++. .+.
T Consensus 80 v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th--~~~ 148 (342)
T 2bfd_B 80 VGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALY--HSQ 148 (342)
T ss_dssp HHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGG--SSC
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcch--hhH
Confidence 5567777665 3 3455544 888864 2344443 3443 245 99999876543 233332 223
Q ss_pred cCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 011937 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (474)
Q Consensus 312 ~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe 357 (474)
.+++-...--|+.++.-- |+.+.+..++.|++ .++|++|-
T Consensus 149 ~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~ 188 (342)
T 2bfd_B 149 SPEAFFAHCPGIKVVIPR--SPFQAKGLLLSCIE----DKNPCIFF 188 (342)
T ss_dssp CCHHHHHTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred hHHHHHhcCCCcEEEeeC--CHHHHHHHHHHHHh----cCCcEEEE
Confidence 455433322377777655 99999999999986 37899984
No 91
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=59.61 E-value=27 Score=30.03 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=30.3
Q ss_pred HcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcE
Q 011937 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (474)
Q Consensus 320 ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPv 354 (474)
+.|.-.++..|.|.+++..|+++.+..||+.-|.+
T Consensus 81 gsgvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 81 GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 45777888899999999999999999999987754
No 92
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=44.74 E-value=42 Score=37.96 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhhhccCCceEEEEeCCCccccch---HHHHHHHHH-Hc--CCCEEEEEEcCCcceeeeccccccCcCHHH
Q 011937 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAA-VM--EAPVVFICRNNGWAISTNISEQFRSDGIVV 316 (474)
Q Consensus 243 lp~AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~---~~EaLn~Aa-~~--~LPvIfVv~NN~yaist~~~~~~~~~~ia~ 316 (474)
++.|+|+|+ .+++.++|.-.-=|.|..+. +-+=++-+. .| ++||++++-..+++ .++...+. .+.+
T Consensus 597 vG~a~G~A~----~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G-~Gp~Hs~~---~~E~ 668 (868)
T 2yic_A 597 VGFEYGYSV----GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSG---RIER 668 (868)
T ss_dssp HHHHHHHHH----HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCC---CHHH
T ss_pred HHHHHHHHc----cCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC-CChhhcCC---cHHH
Confidence 344555544 46665554443334443333 332222221 23 68999999865543 44433322 2334
Q ss_pred HHHHc---CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 011937 317 KGRAY---GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 317 ~a~ay---Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLI 356 (474)
.+.-. ||.++.-- |+.+.+..++.++. +..++|++|
T Consensus 669 ~l~l~~~pnm~V~~Ps--~p~~~~~lLr~a~~--~~~~~Pvii 707 (868)
T 2yic_A 669 FLQLWAEGSMTIAMPS--TPANYFHLLRRHGK--DGIQRPLIV 707 (868)
T ss_dssp HHHHCCTTSCEEECCC--SHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred HHhcCCCCCCEEEEeC--CHHHHHHHHHHHHh--cCCCCcEEE
Confidence 44333 55555444 89999999988775 223589877
No 93
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=44.55 E-value=32 Score=39.20 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=54.7
Q ss_pred HHHHHHHhhhccCCceEEE--EeCCCccc-cchHHHHHHHH-HHc--CCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937 246 AVGVAYSLKMEKKDACAVA--YTGDGGTS-EGDFHAALNFA-AVM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 246 AvGaA~A~k~~~~d~vvv~--~~GDGa~~-eG~~~EaLn~A-a~~--~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ 319 (474)
++|.|++.-+.+.+.++|+ .|||=... |=.+-+=++-+ +.| ++|||+++.. +|...++.. .+..+.....
T Consensus 664 ~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g~G~~H---ss~~~E~~l~ 739 (933)
T 2jgd_A 664 VLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEGQGPEH---SSARLERYLQ 739 (933)
T ss_dssp HHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSSSCTTS---SCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCCCCccc---ccchHHHHHH
Confidence 3444444444466644543 57653321 11222222333 344 7899999986 554334432 2222444444
Q ss_pred Hc---CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 011937 320 AY---GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 320 ay---Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLI 356 (474)
.. ||.++.-- |+.+.+..++.++. +..++|++|
T Consensus 740 ~~~~pnm~V~~Ps--t~~e~~~lLr~a~~--~~~~~Pvii 775 (933)
T 2jgd_A 740 LCAEQNMQVCVPS--TPAQVYHMLRRQAL--RGMRRPLVV 775 (933)
T ss_dssp TCCTTCCEEECCC--SHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred HhCCCCeEEEecC--CHHHHHHHHHHHHH--hcCCCcEEE
Confidence 34 55555444 89999999888742 223789998
No 94
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=42.94 E-value=43 Score=38.87 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=55.4
Q ss_pred HHHHHHHhhhccCCceEEEEeCCCccccch---HHHHHHHHH-Hc--CCCEEEEEEcCCcceeeeccccccCcCHHHHHH
Q 011937 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAA-VM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (474)
Q Consensus 246 AvGaA~A~k~~~~d~vvv~~~GDGa~~eG~---~~EaLn~Aa-~~--~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ 319 (474)
++|.|++.-+.+++.+++.-+-=|.|..+. +-+=++-+. .| ++|||+++...+.+ .++...+. .+...+.
T Consensus 841 ~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G-~G~~Hs~~---~~E~~l~ 916 (1113)
T 2xt6_A 841 AVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSG---RIERFLQ 916 (1113)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCC---CHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-CChhhhcc---cHHHHHh
Confidence 333333333446666554443333443333 333222221 23 68999999865543 44443332 2334443
Q ss_pred Hc---CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 011937 320 AY---GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (474)
Q Consensus 320 ay---Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLI 356 (474)
-. ||.++..- |+.+.+..++.++. +..++|++|
T Consensus 917 l~~~pnm~V~~Ps--~~~~~~~lLr~a~~--~~~~~Pvii 952 (1113)
T 2xt6_A 917 LWAEGSMTIAMPS--TPANYFHLLRRHGK--DGIQRPLIV 952 (1113)
T ss_dssp HCCTTSCEEECCS--SHHHHHHHHHHHHH--SSCCCCEEE
T ss_pred cCCCCCcEEEecC--CHHHHHHHHHHHHh--ccCCCCEEE
Confidence 33 55555444 89999999988775 223589887
No 95
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=39.63 E-value=38 Score=30.39 Aligned_cols=37 Identities=5% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 011937 381 IEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQA 423 (474)
Q Consensus 381 ~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a 423 (474)
++.|. .-+.+.|+++|++|++|+++..+++++.....
T Consensus 109 Ye~WL------~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 109 YGRWL------LTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp HHHHH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 56664 56889999999999999998888888876544
No 96
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=35.54 E-value=47 Score=28.55 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=57.2
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHH-
Q 011937 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVER- 400 (474)
Q Consensus 322 Gi~~i~VDG~D~~av~~A~~~A~~~ar~~~gPvLIe~~TyR~~gHs~sDd~~~YR~~~E~~~w~~~~DPi~r~r~~L~~- 400 (474)
|.-.++..|.|.+++..|+++.+..||+.-|.+ ||-+.|.--.- ..---++.+..-.. .--.|+++.+.-
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv-----tytl~gn~l~i--~itgvpeqvrkela--keaerl~~efni~ 72 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV-----TYTLSGNRLVI--VITGVPEQVRKELA--KEAERLKAEFNIN 72 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE-----EEEEETTEEEE--EEESCCHHHHHHHH--HHHHHHHHHHTCE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE-----EEEEeCCEEEE--EEeCCcHHHHHHHH--HHHHHHHHhcceE
Confidence 667788899999999999999999999987754 33333210000 00001222221110 012333333210
Q ss_pred ---------cCC----CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 011937 401 ---------QGW----WSEQEETELRSSIKKQLLQAIQVAEK 429 (474)
Q Consensus 401 ---------~G~----~te~e~~~i~~~~~~~v~~a~~~A~~ 429 (474)
.|+ +..++++++++..++.|.+|.++|-.
T Consensus 73 v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfagt 114 (170)
T 4hhu_A 73 VQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGT 114 (170)
T ss_dssp EEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcce
Confidence 011 22367888999999999998887654
No 97
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.05 E-value=47 Score=30.26 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=54.3
Q ss_pred EEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc----cc----ccCcCHHHHHHHcCceEEEEeCCCH
Q 011937 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS----EQ----FRSDGIVVKGRAYGIRSIRVDGNDA 333 (474)
Q Consensus 262 vv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~~~----~~----~~~~~ia~~a~ayGi~~i~VDG~D~ 333 (474)
-+.++|=+..-.| .-.++..+++++.+...++..-+..-.. +. ..+.-..+.|+.+|++++.+. ...
T Consensus 96 kIavvg~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~-sg~ 170 (196)
T 2q5c_A 96 ELALIAYKHSIVD----KHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETIN-SGE 170 (196)
T ss_dssp EEEEEEESSCSSC----HHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECC-CCH
T ss_pred cEEEEeCcchhhH----HHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEe-cCH
Confidence 3444444555444 2457778899888777776543221111 00 011234578999999999998 348
Q ss_pred HHHHHHHHHHHHHHhcC
Q 011937 334 LAVYTAVQAAREMAISE 350 (474)
Q Consensus 334 ~av~~A~~~A~~~ar~~ 350 (474)
++|..|+.+|++.++..
T Consensus 171 eSI~~Ai~eA~~l~~~~ 187 (196)
T 2q5c_A 171 ESLRRAIEEALNLIEVR 187 (196)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887764
No 98
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=32.29 E-value=77 Score=29.78 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=50.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhcccccCCCCcCHHHHHHH
Q 011937 377 TLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQ 456 (474)
Q Consensus 377 ~~~E~~~w~~~~DPi~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a~~~A~~~~~p~~~~lf~dVy~~~~~~l~~q~~~ 456 (474)
+.++-.++....|+..|++.-+.-- -.+-++.+++++++++|.+-+++..+.- -|+||++.
T Consensus 183 ~~~eKQ~LLe~~d~~~Rl~~l~~lL--~~e~e~~~l~~~I~~~v~~~~~k~Qrey-----------------~LrEQlk~ 243 (252)
T 3ljc_A 183 KLADKQSVLEMSDVNERLEYLMAMM--ESEIDLLQVEKRIRNRVKKQMEKSQREY-----------------YLNEQMKA 243 (252)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence 4555556666789999988765432 2467778899999999999988876642 38899999
Q ss_pred HHHHHHh
Q 011937 457 LKEIIQT 463 (474)
Q Consensus 457 l~~~l~~ 463 (474)
+.++|-.
T Consensus 244 IqkELGe 250 (252)
T 3ljc_A 244 IQKELGE 250 (252)
T ss_dssp HHHHHHS
T ss_pred HHHHhCC
Confidence 9888853
No 99
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=28.81 E-value=3.7e+02 Score=26.12 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=36.7
Q ss_pred chHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCC-HHHHHHHHHHHHHHHhcCC
Q 011937 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGND-ALAVYTAVQAAREMAISEK 351 (474)
Q Consensus 274 G~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D-~~av~~A~~~A~~~ar~~~ 351 (474)
|..-.++.++ +..++++++|+-.+- + ..-....++||..++.|++.. .. .+.+.|.+.+.+.+
T Consensus 87 GN~g~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~~~~~---~~~~~a~~~~~~~~ 151 (343)
T 2pqm_A 87 GNTGIALCQAGAVFGYRVNIAMPSTM-----S-------VERQMIMKAFGAELILTEGKKGMP---GAIEEVNKMIKENP 151 (343)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGGGHHH---HHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCC-----C-------HHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHHHhCC
Confidence 3333445544 468899998887551 1 112345677888888888642 33 33444444444444
Q ss_pred Cc
Q 011937 352 RP 353 (474)
Q Consensus 352 gP 353 (474)
++
T Consensus 152 ~~ 153 (343)
T 2pqm_A 152 GK 153 (343)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 100
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=28.59 E-value=70 Score=24.54 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=25.1
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhcCCCcE
Q 011937 326 IRVDGNDALAVYTAVQAAREMAISEKRPV 354 (474)
Q Consensus 326 i~VDG~D~~av~~A~~~A~~~ar~~~gPv 354 (474)
++..|.|.++...|+++.+..||+..|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 56678999999999999999999987754
No 101
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=28.05 E-value=96 Score=23.45 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 011937 391 INRFRNWVERQGWWSEQEETELRSSIKKQLLQA 423 (474)
Q Consensus 391 i~r~r~~L~~~G~~te~e~~~i~~~~~~~v~~a 423 (474)
+..|+..|+++|.-+.++++.-.+..|+.+...
T Consensus 25 ~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~ 57 (61)
T 2e62_A 25 LIEYRETLEEQGMKNPEEIERKVEINRKRLEVD 57 (61)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 456999999999999899988888888887754
No 102
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=26.78 E-value=64 Score=25.08 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHH
Q 011937 389 SPINRFRNWVERQGWWSEQEETE 411 (474)
Q Consensus 389 DPi~r~r~~L~~~G~~te~e~~~ 411 (474)
-|+..=+++|+.+| +|++|+++
T Consensus 33 sp~~~K~~FL~sKG-Lt~eEI~~ 54 (70)
T 2w84_A 33 SPLATRRAFLKKKG-LTDEEIDM 54 (70)
T ss_dssp SCHHHHHHHHHHTT-CCHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCHHHHHH
Confidence 57888899999999 58876643
No 103
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=26.24 E-value=1.1e+02 Score=25.99 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCCCCeeEEeCCCCCcccCCCCCCCC-HHHHHHHHHHHH
Q 011937 103 EKRVPCFRVLDDNGELIKGSDFQQVS-KEVAVKMYSHMV 140 (474)
Q Consensus 103 ~~~~p~~rv~~~~g~~~~~~~~~~l~-~e~l~~ly~~M~ 140 (474)
...+|++-++|.+|+++.... -..+ .+++++..+..+
T Consensus 128 v~~~Pt~~lid~~G~~~~~~~-G~~~~~~~l~~~l~~~l 165 (172)
T 3f9u_A 128 ANAQPFYVLIDNEGNPLNKSY-AYDEDISKYINFLQTGL 165 (172)
T ss_dssp CCCSSEEEEECTTSCBSSCCB-CSCCCHHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEeecc-CCCCCHHHHHHHHHHHH
Confidence 457999999999999987542 3345 888877776653
No 104
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.71 E-value=1.7e+02 Score=27.36 Aligned_cols=71 Identities=15% Similarity=0.058 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcceeeecc----cc----ccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhc
Q 011937 278 AALNFAAVMEAPVVFICRNNGWAISTNIS----EQ----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAIS 349 (474)
Q Consensus 278 EaLn~Aa~~~LPvIfVv~NN~yaist~~~----~~----~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~ 349 (474)
+.-.+...+++++.+...++..-+..-.. .. ..+.-..+.|+.+|++++.+.+ .++|..|+.+|++.++.
T Consensus 120 ~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vlI~s--~eSI~~Ai~eA~~l~~~ 197 (225)
T 2pju_A 120 ALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS--AATVRQAFSDALDMTRM 197 (225)
T ss_dssp HHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEESSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEEECC--HHHHHHHHHHHHHHHHH
Confidence 34567788899988887766532211100 00 0112346789999999999994 69999999999987766
Q ss_pred C
Q 011937 350 E 350 (474)
Q Consensus 350 ~ 350 (474)
.
T Consensus 198 ~ 198 (225)
T 2pju_A 198 S 198 (225)
T ss_dssp C
T ss_pred H
Confidence 4
No 105
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=24.15 E-value=86 Score=28.29 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHh-hhcc----CCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEE
Q 011937 241 TQLPQAVGVAYSL-KMEK----KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC 294 (474)
Q Consensus 241 ~~lp~AvGaA~A~-k~~~----~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv 294 (474)
+.+..|+..|+.. +... .+++++.+.||+....++..++...+...++.|.+|-
T Consensus 84 t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 84 AKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp CCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred chHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEE
Confidence 4455566655532 2111 2234566667765456666676777777776655544
No 106
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=23.95 E-value=1e+02 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=26.8
Q ss_pred CCCCCCeeEEeCCCCCccc-CCCCCCCCHHHHHHHHHH
Q 011937 102 SEKRVPCFRVLDDNGELIK-GSDFQQVSKEVAVKMYSH 138 (474)
Q Consensus 102 ~~~~~p~~rv~~~~g~~~~-~~~~~~l~~e~l~~ly~~ 138 (474)
....+|++-++|.+|+++. ....-..+.+++.++++.
T Consensus 88 ~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 88 NVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp TCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence 3567999999999999973 222335688888777654
No 107
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.31 E-value=81 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHH
Q 011937 388 RSPINRFRNWVERQGWWSEQEETEL 412 (474)
Q Consensus 388 ~DPi~r~r~~L~~~G~~te~e~~~i 412 (474)
.-|+..=..+|..+| +|++|+++.
T Consensus 27 ~sp~~~K~~FL~sKG-Lt~~EI~~A 50 (54)
T 3ff5_A 27 QSPLATRRAFLKKKG-LTDEEIDLA 50 (54)
T ss_dssp GSCHHHHHHHHHHTT-CCHHHHHHH
T ss_pred cCCHHHHHHHHHHcC-CCHHHHHHH
Confidence 358888899999999 588887654
No 108
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=22.92 E-value=4.6e+02 Score=26.03 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=54.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHc-C-CCCHHHHHHHH---HHHHHHHHHHHHHHHhCCCCC-hhhhccc---ccCCCC
Q 011937 377 TLDEIEYWKTERSPINRFRNWVERQ-G-WWSEQEETELR---SSIKKQLLQAIQVAEKTEKPA-ITELFSD---VYDVPP 447 (474)
Q Consensus 377 ~~~E~~~w~~~~DPi~r~r~~L~~~-G-~~te~e~~~i~---~~~~~~v~~a~~~A~~~~~p~-~~~lf~d---Vy~~~~ 447 (474)
++.-++.|+. =+.++.++|++. | -+|++.+.+.. ++.++.+.+..+.+...|.|- -.+++.- .|.-.+
T Consensus 129 ~~~~~~y~~~---el~~l~~~LE~~tG~~i~~e~L~eai~~~N~~r~~~~~~~~l~~~~p~pisg~d~~~~~~~~~~~~~ 205 (385)
T 3o3m_B 129 LEAGVKYLIS---EYKGVKRELEEICGYEIEEAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFFMRK 205 (385)
T ss_dssp SHHHHHHHHH---HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHGGGGSCH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhheeCCH
Confidence 4556788863 678888998864 3 38998886544 455666667766666654442 2233321 122234
Q ss_pred cCHHHHHHHHHHHHHhCCCC
Q 011937 448 SNLAEQEKQLKEIIQTYPQD 467 (474)
Q Consensus 448 ~~l~~q~~~l~~~l~~~p~~ 467 (474)
....+..++|.+.|++.|+.
T Consensus 206 ~~~~~~~~~l~~el~~~~~~ 225 (385)
T 3o3m_B 206 EEHTELVKDLIAKLNAMPEE 225 (385)
T ss_dssp HHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhhhhc
Confidence 45556777888888877753
No 109
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=22.45 E-value=2.9e+02 Score=23.55 Aligned_cols=89 Identities=18% Similarity=0.099 Sum_probs=46.2
Q ss_pred ccCCceEEEEeCCCccccchHHHHHHHHHH------cCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEe
Q 011937 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAV------MEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVD 329 (474)
Q Consensus 256 ~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~------~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VD 329 (474)
...+.+++|+--+-.-+.-...+-+..... .+.|+|+|++--.. ....+.......+.++.+|++.+.+.
T Consensus 90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl----~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM----AQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGG----GGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcch----hhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 355667777765532211111111222222 36788777653221 11112222345567778899999988
Q ss_pred C-CCHHHHHHHHHHHHHHHh
Q 011937 330 G-NDALAVYTAVQAAREMAI 348 (474)
Q Consensus 330 G-~D~~av~~A~~~A~~~ar 348 (474)
. .+-..|.+.+....+.++
T Consensus 166 a~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHHh
Confidence 7 565666666666655443
No 110
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.39 E-value=1.2e+02 Score=28.22 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=35.4
Q ss_pred CCceEEEEeCCCccccchHHHHHHHHHHc-CC--CEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeC
Q 011937 258 KDACAVAYTGDGGTSEGDFHAALNFAAVM-EA--PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (474)
Q Consensus 258 ~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~-~L--PvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG 330 (474)
+.+++|.+.|.|+.. +++--+... ++ .|+.|+-|+.-+ .-.++|+.+|+|++.++-
T Consensus 8 ~~ri~vl~SG~gsnl-----~all~~~~~~~~~~~I~~Vis~~~~a------------~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 8 ELRVGVLISGRGSNL-----EALAKAFSTEESSVVISCVISNNAEA------------RGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp CEEEEEEESSCCHHH-----HHHHHHTCCC-CSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCB
T ss_pred CCEEEEEEECCcHHH-----HHHHHHHHcCCCCcEEEEEEeCCcch------------HHHHHHHHcCCCEEEeCc
Confidence 456888889988663 344444333 24 477777765211 124689999999998864
No 111
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=22.18 E-value=88 Score=27.59 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=28.4
Q ss_pred ccCCceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEEcC
Q 011937 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297 (474)
Q Consensus 256 ~~~d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~NN 297 (474)
+.-| +||+.++ ..+.|..+| +.+|...+.|||.+..++
T Consensus 76 ~~aD-~vva~~~--~~d~Gt~~E-iGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 76 QQAD-VVVAEVT--QPSLGVGYE-LGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHCS-EEEEECS--SCCHHHHHH-HHHHHHTCSSEEEEECTT
T ss_pred HhCC-EEEEECC--CCCCCHHHH-HHHHHHCCCEEEEEEcCC
Confidence 3344 4555665 567788888 899999999999987665
No 112
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=22.01 E-value=3.5e+02 Score=26.10 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=29.4
Q ss_pred chHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCC
Q 011937 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (474)
Q Consensus 274 G~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~ 331 (474)
|..-.++.++ +..++|+++|+-.+- + ..-.+..+.||..++.|++.
T Consensus 82 GN~g~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 82 GNTGISLAMAARLKGYRLICVMPENT-----S-------VERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEESSS-----C-------HHHHHHHHHHTCEEEEECST
T ss_pred cHHHHHHHHHHHHcCCcEEEEECCCC-----C-------HHHHHHHHHCCCEEEEECCC
Confidence 4444455554 467899888875441 1 11234567899999999874
No 113
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=21.76 E-value=3.1e+02 Score=24.30 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=47.2
Q ss_pred hccCCceEEEEeCCCc-cccchHHHHHHHHHHcCCCEEEEEEcCCcceeee----------ccccccCcCHHHHHHHcCc
Q 011937 255 MEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN----------ISEQFRSDGIVVKGRAYGI 323 (474)
Q Consensus 255 ~~~~d~vvv~~~GDGa-~~eG~~~EaLn~Aa~~~LPvIfVv~NN~yaist~----------~~~~~~~~~ia~~a~ayGi 323 (474)
+...|. ||+++ ||. ...|..+| +.+|...+.||+.+..+-...-.+. .+.|+...+..-.+.-+ .
T Consensus 67 i~~aD~-viA~l-dg~~~D~Gt~~E-iG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~-~ 142 (162)
T 3ehd_A 67 VLASDL-LVALL-DGPTIDAGVASE-IGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIK-L 142 (162)
T ss_dssp HHTCSE-EEEEC-CSSSCCHHHHHH-HHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHH-T
T ss_pred HHHCCE-EEEEC-CCCCCCCCHHHH-HHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHH-h
Confidence 334444 45554 664 57898888 9999999999998887654321111 11223333433333222 2
Q ss_pred eEEEEeCCCHHHHHHHHHH
Q 011937 324 RSIRVDGNDALAVYTAVQA 342 (474)
Q Consensus 324 ~~i~VDG~D~~av~~A~~~ 342 (474)
.+..|. +.+++.++++.
T Consensus 143 ~g~~~~--~~~~~~~~l~~ 159 (162)
T 3ehd_A 143 NGRVVS--SEEDLLEEIKQ 159 (162)
T ss_dssp TEEEES--SHHHHHHHHHH
T ss_pred CCeEEe--CHHHHHHHHHH
Confidence 455554 77777777654
No 114
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=21.75 E-value=5.2e+02 Score=24.54 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=39.2
Q ss_pred chHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHHHHHHHHHHHHHhcCCC
Q 011937 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352 (474)
Q Consensus 274 G~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av~~A~~~A~~~ar~~~g 352 (474)
|..-.++.++ +..++++++|+-.+ . + ..-....+.||..++.|++.. ...++.+.|.+.+.+.++
T Consensus 71 GN~g~a~A~~a~~~G~~~~iv~p~~---~--~-------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~ 136 (316)
T 1y7l_A 71 GNTGIALAYVAAARGYKITLTMPET---M--S-------LERKRLLCGLGVNLVLTEGAK--GMKGAIAKAEEIVASDPS 136 (316)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEETT---S--C-------HHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHcCCcEEEEECCC---C--C-------HHHHHHHHHcCCEEEEeCCCC--CHHHHHHHHHHHHHhCCC
Confidence 4444455554 46889999888655 1 1 112346788999999998752 122344555555555444
Q ss_pred c
Q 011937 353 P 353 (474)
Q Consensus 353 P 353 (474)
+
T Consensus 137 ~ 137 (316)
T 1y7l_A 137 R 137 (316)
T ss_dssp T
T ss_pred C
Confidence 4
No 115
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=21.74 E-value=1.4e+02 Score=28.73 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=44.7
Q ss_pred EEEeCCCcc--ccchHHHHHHHHHHcCCCEEEEEEcCCcc------eeeeccccccCcCHHHHHHHcCceEEEEeCCCHH
Q 011937 263 VAYTGDGGT--SEGDFHAALNFAAVMEAPVVFICRNNGWA------ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDAL 334 (474)
Q Consensus 263 v~~~GDGa~--~eG~~~EaLn~Aa~~~LPvIfVv~NN~ya------ist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~ 334 (474)
|+|.-||+. +.|.+.-+|.+|..++ .|.|+|.+..-. +....-......++.+..+.++...+-||.-+..
T Consensus 3 i~ir~Da~~~IG~GHvmRcl~LA~~l~-~v~F~~~~~~~~~~~~~g~~v~~l~~~d~~~~~~~l~~~~~d~lIvD~Y~~~ 81 (282)
T 3hbm_A 3 VLFRSDSSSQIGFGHIKRDLVLAKQYS-DVSFACLPLEGSLIDEIPYPVYELSSESIYELINLIKEEKFELLIIDHYGIS 81 (282)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTTCS-SEEEEECCCTTCCGGGCCSCEEECSSSCHHHHHHHHHHHTCSEEEEECTTCC
T ss_pred EEEEEecCCCccccHHHHHHHHHHHHH-hCEEEEecCcHhHHHHCCCeEEEcCccCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 566667777 6888999999999988 999999764211 0000000001112344455567788888876554
Q ss_pred HH
Q 011937 335 AV 336 (474)
Q Consensus 335 av 336 (474)
.-
T Consensus 82 ~~ 83 (282)
T 3hbm_A 82 VD 83 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 116
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=20.59 E-value=3e+02 Score=26.39 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=38.6
Q ss_pred chHHHHHHHH-HHcCCCEEEEEEcCCcceeeeccccccCcCHHHHHHHcCceEEEEeCCCHHHH-HHHHHHHHHHHhcC
Q 011937 274 GDFHAALNFA-AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAV-YTAVQAAREMAISE 350 (474)
Q Consensus 274 G~~~EaLn~A-a~~~LPvIfVv~NN~yaist~~~~~~~~~~ia~~a~ayGi~~i~VDG~D~~av-~~A~~~A~~~ar~~ 350 (474)
|..--++.++ +.+++|+++|+..+- ....-....++||+.++.|++..-... ..+.+.|.+.+.+.
T Consensus 81 GN~g~alA~~a~~~G~~~~iv~p~~~-----------~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~ 148 (325)
T 1j0a_A 81 SNHAFVTGLAAKKLGLDAILVLRGKE-----------ELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREG 148 (325)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEESCC-----------CSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHhCCcEEEEECCCC-----------CCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcC
Confidence 4444556555 468899998886643 012234567889999999987542110 12344455554443
No 117
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.45 E-value=1.8e+02 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=15.4
Q ss_pred CceEEEEeCCCccccchHHHHHHHHHHcCCCEEEEEE
Q 011937 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (474)
Q Consensus 259 d~vvv~~~GDGa~~eG~~~EaLn~Aa~~~LPvIfVv~ 295 (474)
+.++|++..-|... ...+++..|...+.++|.|..
T Consensus 80 ~d~vI~iS~sG~t~--~~~~~~~~ak~~g~~vi~IT~ 114 (186)
T 1m3s_A 80 GDLVIIGSGSGETK--SLIHTAAKAKSLHGIVAALTI 114 (186)
T ss_dssp TCEEEEECSSSCCH--HHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEcCCCCcH--HHHHHHHHHHHCCCEEEEEEC
Confidence 34444444444442 233444444444444444443
Done!