BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011938
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 120 bits (301), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGAF 94
L KGPWT ED +I+ VKK+G W + K+ G R GK CR RW NHL P +KK ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSW 62
Query: 95 TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
T+EE+++I E H +GN+WA +A LPGRTDN +KN+WN+ IKR+
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 117 bits (294), Expect = 9e-27, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGA 93
+L KGPWT ED +I V+K+G W+ + K+ G R GK CR RW NHL P +KK +
Sbjct: 1 MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 58
Query: 94 FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
+T+EE+++I + H ++GN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 117 bits (294), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGAF 94
L KGPWT ED +I++V+K+G W+ + K+ G R GK CR RW NHL P +KK ++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 82
Query: 95 TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
T+EE+++I + H ++GN+WA +A LPGRTDN +KN+WN+ ++R+
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRPNLKKGAF 94
L KGPWT ED +I V+K+G W+ + K+ G R GK CR RW NHL P +KK ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 95 TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
T+EE+++I + H ++GN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFT 95
L KGPWT ED +I V+K+G W+ + K+ R GK CR RW NHL P +KK ++T
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 96 QEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
+EE+++I + H ++GN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Query: 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL-FRCGKSCRLRWANHLRPNLKKGAFTQ 96
KGP+T AED ++ +YVK++G NW + S L R K CR RW NHL P + K A+T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRI--TSFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59
Query: 97 EEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
EE++ I + K+G+KW+ +A +PGRTDN IKN WN+ I +R
Sbjct: 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 42/51 (82%)
Query: 89 LKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
+KK ++T+EE+++I + H ++GN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLF--RCGKSCRLRWANHLRPNLKKGAF 94
KK +T ED +L V +HG +W + + F R + CR RW N+L P++ +
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMI---AATFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 95 TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNT 134
T EE+ ++V+ + G +WA +A PGRTD IKN W T
Sbjct: 66 TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 42/51 (82%)
Query: 89 LKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139
+KK ++T+EE++++ + H ++GN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQE 97
K +T ED L V ++G +W + + + R + CR RW N++ P L+ ++ E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 98 EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141
E+ ++ + +A+ G KW +++ L R+DN I+N W + R +
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRP 87
L KGPWT ED LI V+K+G W+ + K+ G R GK CR RW NHL P
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 89 LKKGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNTRI 136
L KG +T+EE+Q +++L K G K W+ +A HL GR + + W+ +
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRP 87
L KGPWT ED +I+ V+K+G W+ + K+ G R GK CR RW NHL P
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 89 LKKGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNTRI 136
L KG +T+EE+Q ++EL K G K W+ +A HL GR + + W+ +
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN-SGLFRCGKSCRLRWANHLRP 87
L KGPWT ED +I V+K+G W+ + K+ G R GK CR RW NHL P
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 89 LKKGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNTRI 136
L KG +T+EE+Q +++L K G K W+ +A HL GR + + W+ +
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 41 WTSAEDAILIDYVKKHGEGNWNAVQKNSGLFR-CGKSCRLRWANHLRPNLKK 91
W + ED IL V K+G+ W+ + S L R K C+ RW L P++KK
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIA--SLLHRKSAKQCKARWYEWLDPSIKK 61
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN 67
I KK WT E + V+K+GEGNW A+ KN
Sbjct: 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN 67
I KK WT E + V+K+GEGNW A+ KN
Sbjct: 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 35.4 bits (80), Expect = 0.078, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN 67
I KK WT E + V+K+GEGNW A+ KN
Sbjct: 7 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 39
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKN 67
I KK WT E + V+K+GEGNW A+ KN
Sbjct: 11 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 43
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKN 67
KK WT E + V+K+GEGNW A+ KN
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 31
>pdb|1RU3|A Chain A, Crystal Structure Of The Monomeric Acetyl-Coa Synthase
From Carboxydothermus Hydrogenoformans
Length = 732
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 50 IDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWA--NHLRPNLKKGAFTQE---------- 97
I Y +GEG W+ Q++ R K + A HL L F QE
Sbjct: 410 IHYFTNYGEGFWHTAQRDLTWVRISKEAFAKGARLKHL-GQLLYAKFKQEFPSIVDRVQV 468
Query: 98 ----EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWN 133
+EQ ++EL K+A A L +D + Y++
Sbjct: 469 TIYTDEQKVLELREIARKKYAERDARLRELSDEAVDTYYS 508
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 32.0 bits (71), Expect = 0.68, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 94 FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPP 149
+T EE+++ + AK G +W +++ + RT ++K+Y K + + GL P
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 91 KGAFTQEEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYW 132
K +T EE++ + L + G + W +A+H P RTD + + W
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 92 GAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKN 130
G +T EE + + EL K GN WA + A L GR+ + +K+
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD 61
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 89 LKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYW 132
L K +T+EE++ + +L + G + W +A +LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 89 LKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYW 132
L K +T+EE++ + +L + G + W +A +LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAV 64
K+ W ED L V+K+GEGNW+ +
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 29
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAV 64
K+ W ED L V+K+GEGNW+ +
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 298 TLSNGNFSASKPNLGAVKLELPSLQYTETDLGSW--GTSSPQPLLETV---------DAF 346
T N N +S G +K+ELP+ + E + + G S P+++ +
Sbjct: 1473 TFKNANIFSSVKCFGPIKVELPTKETVEIGIVDYEAGASHGNPVVDFLKRNGSTLEQKVN 1532
Query: 347 IQSPPPTGTLDSGCPS 362
+++P P LDS PS
Sbjct: 1533 LENPIPIAVLDSYTPS 1548
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAV 64
K+ W ED L V+K+GEGNW+ +
Sbjct: 10 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 37
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 KKGPWTSAEDAILIDYVKKHGEGNWNAV 64
K+ W ED L V+K+GEGNW+ +
Sbjct: 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 36
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 12 MLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQ 65
+++++ D PL G T + V WT ED L+ V K+G G+W ++
Sbjct: 142 LINSNYKDDPLKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIR 195
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 12 MLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQ 65
+++++ D PL G T + V WT ED L+ V K+G G+W ++
Sbjct: 143 LINSNYKDDPLKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIR 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,076,113
Number of Sequences: 62578
Number of extensions: 643702
Number of successful extensions: 1063
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 44
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)