Query 011938
Match_columns 474
No_of_seqs 304 out of 1389
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.2E-32 3.9E-37 235.6 11.9 104 35-139 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.1E-32 7E-37 235.6 10.6 104 38-142 1-104 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 5.7E-32 1.9E-36 240.6 10.6 106 38-144 2-107 (131)
4 3osg_A MYB21; transcription-DN 100.0 1.3E-31 4.3E-36 237.1 12.2 105 32-138 5-109 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.3E-31 4.6E-36 236.9 11.3 106 33-139 22-127 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.2E-29 7.5E-34 230.2 11.0 106 33-139 53-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.5E-30 1.5E-34 234.8 4.3 118 35-153 3-121 (159)
8 2dim_A Cell division cycle 5-l 99.8 2.5E-21 8.7E-26 154.7 4.4 67 32-99 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 2.8E-21 9.5E-26 170.8 3.1 92 64-156 1-93 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 4.4E-18 1.5E-22 164.8 8.0 106 33-139 3-200 (246)
11 2juh_A Telomere binding protei 99.7 9.8E-18 3.4E-22 148.0 6.4 85 31-115 10-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 1.4E-17 4.7E-22 135.1 4.8 58 77-135 9-66 (73)
13 2roh_A RTBP1, telomere binding 99.7 1.5E-16 5.2E-21 140.6 9.6 82 31-112 24-114 (122)
14 2d9a_A B-MYB, MYB-related prot 99.7 1E-16 3.5E-21 124.3 6.1 57 33-90 3-59 (60)
15 2cu7_A KIAA1915 protein; nucle 99.6 1.3E-16 4.6E-21 128.2 6.5 63 85-147 3-65 (72)
16 2din_A Cell division cycle 5-l 99.6 1.5E-16 5.3E-21 125.6 6.4 60 84-144 2-61 (66)
17 1gvd_A MYB proto-oncogene prot 99.6 1.3E-16 4.4E-21 120.3 4.9 52 36-88 1-52 (52)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 2E-16 7E-21 119.1 4.2 52 36-88 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.6 3E-16 1E-20 125.0 4.8 64 32-95 4-68 (69)
20 2d9a_A B-MYB, MYB-related prot 99.6 6.9E-16 2.4E-20 119.6 4.5 55 86-140 3-58 (60)
21 2dim_A Cell division cycle 5-l 99.6 1.1E-15 3.9E-20 121.9 5.6 62 86-147 4-66 (70)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 2.1E-15 7.2E-20 113.5 6.2 50 89-138 1-51 (52)
23 3sjm_A Telomeric repeat-bindin 99.6 1.1E-15 3.9E-20 120.7 3.9 56 35-90 8-64 (64)
24 1gvd_A MYB proto-oncogene prot 99.6 3.5E-15 1.2E-19 112.5 6.1 50 89-138 1-51 (52)
25 1x41_A Transcriptional adaptor 99.6 2.9E-15 9.8E-20 116.5 5.6 55 33-88 3-57 (60)
26 2yum_A ZZZ3 protein, zinc fing 99.5 3E-15 1E-19 120.8 4.9 61 86-146 3-69 (75)
27 1w0t_A Telomeric repeat bindin 99.5 6.5E-15 2.2E-19 111.6 6.1 50 90-139 1-53 (53)
28 1ity_A TRF1; helix-turn-helix, 99.5 5.6E-15 1.9E-19 117.7 5.9 59 84-142 3-64 (69)
29 1w0t_A Telomeric repeat bindin 99.5 5.8E-15 2E-19 111.8 4.2 49 37-86 1-51 (53)
30 1x41_A Transcriptional adaptor 99.5 1.1E-14 3.7E-19 113.2 5.6 53 86-138 3-56 (60)
31 2elk_A SPCC24B10.08C protein; 99.5 1E-14 3.5E-19 112.8 5.3 52 34-85 5-56 (58)
32 2yum_A ZZZ3 protein, zinc fing 99.5 8.6E-15 2.9E-19 118.2 3.7 60 33-93 3-67 (75)
33 2din_A Cell division cycle 5-l 99.5 6E-15 2E-19 116.4 1.5 57 33-92 4-60 (66)
34 3sjm_A Telomeric repeat-bindin 99.5 5.4E-14 1.8E-18 111.1 6.4 51 89-139 9-62 (64)
35 2cu7_A KIAA1915 protein; nucle 99.5 2.6E-14 8.8E-19 114.8 3.7 58 32-91 3-60 (72)
36 2elk_A SPCC24B10.08C protein; 99.4 9.3E-14 3.2E-18 107.4 6.1 50 87-136 5-56 (58)
37 2ltp_A Nuclear receptor corepr 99.1 1.1E-14 3.9E-19 121.8 0.0 56 84-139 9-64 (89)
38 3osg_A MYB21; transcription-DN 99.4 7E-14 2.4E-18 123.3 4.2 83 86-168 6-88 (126)
39 1gv2_A C-MYB, MYB proto-oncoge 99.4 9.3E-14 3.2E-18 118.3 3.5 69 88-156 1-70 (105)
40 2aje_A Telomere repeat-binding 99.4 2.2E-13 7.6E-18 117.5 5.2 81 31-111 6-95 (105)
41 2ckx_A NGTRF1, telomere bindin 99.4 6.8E-13 2.3E-17 110.0 6.7 69 39-108 1-79 (83)
42 2llk_A Cyclin-D-binding MYB-li 99.4 5.5E-13 1.9E-17 108.1 5.2 55 33-91 18-72 (73)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.2E-12 4E-17 106.1 6.1 52 86-137 13-68 (73)
44 3zqc_A MYB3; transcription-DNA 99.3 6E-13 2E-17 118.0 3.7 78 91-168 2-80 (131)
45 2k9n_A MYB24; R2R3 domain, DNA 99.3 7.6E-13 2.6E-17 113.5 3.5 66 91-156 1-67 (107)
46 2yus_A SWI/SNF-related matrix- 99.3 2E-12 6.8E-17 106.2 5.9 52 31-84 11-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.3 2.3E-12 7.7E-17 105.8 4.4 48 88-135 15-62 (79)
48 2ckx_A NGTRF1, telomere bindin 99.3 7.8E-12 2.7E-16 103.6 6.9 48 92-139 1-53 (83)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.2 4.1E-12 1.4E-16 102.9 4.3 56 30-86 10-68 (73)
50 2juh_A Telomere binding protei 99.2 8.2E-12 2.8E-16 110.2 6.5 66 85-151 11-86 (121)
51 2aje_A Telomere repeat-binding 99.2 1.2E-11 4.2E-16 106.7 7.4 67 86-153 8-84 (105)
52 2ltp_A Nuclear receptor corepr 98.9 8.9E-13 3.1E-17 110.3 0.0 55 31-87 9-63 (89)
53 1x58_A Hypothetical protein 49 99.2 1.8E-11 6.3E-16 96.0 6.7 49 90-138 7-58 (62)
54 1ign_A Protein (RAP1); RAP1,ye 99.2 1.4E-11 4.7E-16 119.5 5.5 55 87-141 4-64 (246)
55 2cjj_A Radialis; plant develop 99.1 5.4E-11 1.8E-15 100.6 6.7 55 90-144 7-67 (93)
56 2roh_A RTBP1, telomere binding 99.1 5.3E-11 1.8E-15 105.2 6.3 53 86-138 26-83 (122)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 2.1E-09 7.3E-14 83.7 6.3 48 90-137 11-58 (61)
58 2cjj_A Radialis; plant develop 98.9 6.8E-10 2.3E-14 93.8 3.2 47 38-85 8-57 (93)
59 3hm5_A DNA methyltransferase 1 98.8 4.2E-09 1.4E-13 89.0 7.0 66 74-143 17-87 (93)
60 2iw5_B Protein corest, REST co 98.8 8.4E-09 2.9E-13 99.4 6.7 77 60-138 104-180 (235)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.1E-08 3.9E-13 82.5 5.2 50 88-138 5-58 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.7 1.4E-08 4.9E-13 79.0 5.5 50 35-86 9-58 (61)
63 1x58_A Hypothetical protein 49 98.7 1E-08 3.4E-13 80.5 3.6 49 37-87 7-58 (62)
64 2xag_B REST corepressor 1; ami 98.5 7.6E-08 2.6E-12 101.8 4.8 45 92-136 381-425 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1E-07 3.4E-12 76.9 4.0 50 35-86 5-57 (72)
66 1fex_A TRF2-interacting telome 98.4 1.2E-07 4.1E-12 73.7 3.3 48 38-86 2-58 (59)
67 1fex_A TRF2-interacting telome 98.4 3.4E-07 1.2E-11 71.1 4.9 47 91-137 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.4 3.4E-07 1.2E-11 74.1 4.8 48 90-137 7-58 (73)
69 1wgx_A KIAA1903 protein; MYB D 98.3 4.7E-07 1.6E-11 73.3 3.9 49 38-87 8-59 (73)
70 2iw5_B Protein corest, REST co 98.3 6.9E-07 2.4E-11 86.2 5.2 50 35-86 130-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1E-05 3.5E-10 63.3 7.0 50 86-135 4-54 (63)
72 1ofc_X ISWI protein; nuclear p 97.9 3.8E-05 1.3E-09 77.3 10.1 101 39-140 111-277 (304)
73 1ug2_A 2610100B20RIK gene prod 97.9 1.1E-05 3.7E-10 67.7 5.1 49 93-141 35-86 (95)
74 4iej_A DNA methyltransferase 1 97.9 2.6E-05 8.9E-10 65.8 7.1 63 79-145 22-89 (93)
75 2lr8_A CAsp8-associated protei 97.0 3.5E-06 1.2E-10 67.1 0.0 44 93-137 16-62 (70)
76 4eef_G F-HB80.4, designed hema 97.8 5.1E-06 1.7E-10 67.2 0.8 43 91-133 20-66 (74)
77 4eef_G F-HB80.4, designed hema 97.7 4.8E-06 1.6E-10 67.3 0.4 44 38-82 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.6 5.8E-05 2E-09 59.0 4.8 51 32-84 3-54 (63)
79 4a69_C Nuclear receptor corepr 97.5 0.00014 4.9E-09 61.2 5.9 45 91-135 43-87 (94)
80 2crg_A Metastasis associated p 97.5 0.0002 6.8E-09 57.1 6.4 45 90-134 7-52 (70)
81 2xag_B REST corepressor 1; ami 97.3 0.00016 5.3E-09 76.8 5.4 48 36-85 378-425 (482)
82 3hm5_A DNA methyltransferase 1 97.2 0.00021 7.1E-09 60.3 4.0 49 36-85 28-80 (93)
83 2ebi_A DNA binding protein GT- 97.2 0.00029 1E-08 57.7 4.3 50 90-139 3-66 (86)
84 2ebi_A DNA binding protein GT- 96.9 0.00025 8.6E-09 58.1 1.5 49 37-85 3-63 (86)
85 4a69_C Nuclear receptor corepr 96.8 0.00074 2.5E-08 56.8 3.8 44 38-83 43-86 (94)
86 2crg_A Metastasis associated p 96.8 0.00094 3.2E-08 53.2 3.9 45 37-83 7-52 (70)
87 2y9y_A Imitation switch protei 96.8 0.0022 7.4E-08 66.1 7.6 105 39-143 124-296 (374)
88 4b4c_A Chromodomain-helicase-D 96.7 0.0059 2E-07 57.2 9.4 47 93-139 136-197 (211)
89 1ug2_A 2610100B20RIK gene prod 96.4 0.002 6.9E-08 54.0 3.6 45 38-83 33-79 (95)
90 2lr8_A CAsp8-associated protei 94.7 0.0018 6.2E-08 51.6 0.0 45 40-86 16-62 (70)
91 4iej_A DNA methyltransferase 1 94.7 0.026 8.9E-07 47.5 4.1 49 36-85 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.6 0.07 2.4E-06 42.0 6.2 51 89-139 5-60 (64)
93 1ofc_X ISWI protein; nuclear p 93.2 0.14 4.7E-06 51.5 6.8 49 91-139 110-159 (304)
94 4b4c_A Chromodomain-helicase-D 91.3 0.24 8.2E-06 46.1 5.6 51 90-140 6-61 (211)
95 2xb0_X Chromo domain-containin 90.0 0.19 6.7E-06 49.6 3.8 28 39-66 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 87.9 0.68 2.3E-05 36.4 4.8 49 35-83 4-55 (64)
97 2xb0_X Chromo domain-containin 78.6 4.5 0.00015 39.9 7.4 51 91-141 3-58 (270)
98 2rq5_A Protein jumonji; develo 65.4 3.7 0.00012 35.8 2.9 57 48-107 46-113 (121)
99 2li6_A SWI/SNF chromatin-remod 61.2 4.4 0.00015 34.6 2.6 39 48-87 53-98 (116)
100 2y9y_A Imitation switch protei 59.0 15 0.00053 37.7 6.6 47 92-138 124-172 (374)
101 2o8x_A Probable RNA polymerase 57.4 12 0.00041 27.5 4.2 42 97-139 18-59 (70)
102 1ig6_A MRF-2, modulator recogn 57.0 7 0.00024 32.7 3.1 41 47-87 36-87 (107)
103 2k27_A Paired box protein PAX- 55.3 79 0.0027 27.1 9.8 67 38-109 23-99 (159)
104 1k78_A Paired box protein PAX5 54.7 65 0.0022 27.2 9.1 68 37-109 29-106 (149)
105 1ku3_A Sigma factor SIGA; heli 52.1 17 0.00057 27.6 4.3 43 97-140 13-59 (73)
106 2jrz_A Histone demethylase jar 50.6 10 0.00035 32.4 3.1 41 47-87 43-93 (117)
107 2li6_A SWI/SNF chromatin-remod 49.9 9.7 0.00033 32.5 2.9 39 101-139 53-99 (116)
108 3hug_A RNA polymerase sigma fa 48.8 22 0.00076 28.1 4.7 42 97-139 40-81 (92)
109 2lm1_A Lysine-specific demethy 47.4 22 0.00075 29.5 4.6 40 100-139 47-98 (107)
110 2p7v_B Sigma-70, RNA polymeras 47.0 17 0.00059 27.0 3.6 41 98-139 9-53 (68)
111 2jrz_A Histone demethylase jar 46.1 19 0.00065 30.7 4.1 40 100-139 43-94 (117)
112 2cxy_A BAF250B subunit, HBAF25 45.3 10 0.00035 32.7 2.3 41 47-87 54-104 (125)
113 2kk0_A AT-rich interactive dom 44.4 34 0.0012 30.3 5.6 51 100-150 67-130 (145)
114 2cxy_A BAF250B subunit, HBAF25 43.5 24 0.00082 30.4 4.4 40 100-139 54-105 (125)
115 2eqy_A RBP2 like, jumonji, at 43.4 15 0.00051 31.6 3.1 41 47-87 45-95 (122)
116 1c20_A DEAD ringer protein; DN 43.4 11 0.00039 32.6 2.3 41 47-87 55-106 (128)
117 2eqy_A RBP2 like, jumonji, at 42.5 24 0.00083 30.3 4.3 39 101-139 46-96 (122)
118 2jxj_A Histone demethylase jar 42.3 12 0.00042 30.5 2.3 40 48-87 40-89 (96)
119 1kkx_A Transcription regulator 42.2 13 0.00045 32.2 2.5 41 101-141 52-100 (123)
120 2lm1_A Lysine-specific demethy 39.8 12 0.00042 31.1 1.9 40 47-86 47-96 (107)
121 1u78_A TC3 transposase, transp 38.2 1.6E+02 0.0056 24.0 10.0 88 39-132 5-100 (141)
122 3cz6_A DNA-binding protein RAP 37.7 23 0.00079 32.5 3.5 25 34-58 110-142 (168)
123 2kk0_A AT-rich interactive dom 37.5 23 0.00077 31.4 3.3 41 47-87 67-118 (145)
124 1x3u_A Transcriptional regulat 35.8 52 0.0018 24.6 4.8 42 94-138 17-58 (79)
125 1or7_A Sigma-24, RNA polymeras 35.4 54 0.0018 28.4 5.5 31 109-140 155-185 (194)
126 2q1z_A RPOE, ECF SIGE; ECF sig 34.3 35 0.0012 29.4 4.1 32 108-140 149-180 (184)
127 1kkx_A Transcription regulator 33.8 9.3 0.00032 33.1 0.2 39 48-87 52-97 (123)
128 2jxj_A Histone demethylase jar 33.8 18 0.00061 29.5 1.9 38 101-138 40-89 (96)
129 2yqf_A Ankyrin-1; death domain 32.2 49 0.0017 27.6 4.5 35 95-130 14-48 (111)
130 3ulq_B Transcriptional regulat 31.8 65 0.0022 25.8 5.0 47 90-139 26-72 (90)
131 1c20_A DEAD ringer protein; DN 31.6 64 0.0022 27.7 5.2 41 100-140 55-108 (128)
132 2rq5_A Protein jumonji; develo 31.5 39 0.0013 29.2 3.8 81 34-140 3-98 (121)
133 3c57_A Two component transcrip 30.0 60 0.0021 25.9 4.5 44 93-139 27-70 (95)
134 1je8_A Nitrate/nitrite respons 30.0 55 0.0019 25.4 4.1 43 93-138 21-63 (82)
135 3i4p_A Transcriptional regulat 29.1 41 0.0014 29.4 3.6 43 97-140 3-46 (162)
136 1tty_A Sigma-A, RNA polymerase 28.8 61 0.0021 25.3 4.3 41 98-139 22-66 (87)
137 1fse_A GERE; helix-turn-helix 28.6 63 0.0022 23.7 4.1 44 92-138 10-53 (74)
138 1ig6_A MRF-2, modulator recogn 28.3 27 0.00094 29.0 2.2 39 100-138 36-87 (107)
139 3i4p_A Transcriptional regulat 28.0 26 0.00089 30.8 2.1 43 44-88 3-45 (162)
140 2of5_A Death domain-containing 27.6 51 0.0017 28.1 3.8 37 90-130 18-54 (114)
141 3mzy_A RNA polymerase sigma-H 27.4 70 0.0024 26.5 4.7 30 109-139 123-152 (164)
142 1xsv_A Hypothetical UPF0122 pr 27.4 96 0.0033 25.8 5.5 41 98-139 29-69 (113)
143 1rp3_A RNA polymerase sigma fa 27.4 82 0.0028 28.0 5.4 39 100-139 193-231 (239)
144 2o71_A Death domain-containing 26.7 53 0.0018 28.0 3.8 29 101-130 26-54 (115)
145 2jpc_A SSRB; DNA binding prote 26.3 81 0.0028 22.4 4.3 39 99-139 3-41 (61)
146 2of5_H Leucine-rich repeat and 25.3 52 0.0018 27.9 3.4 31 99-130 13-43 (118)
147 1wxp_A THO complex subunit 1; 24.8 78 0.0027 26.3 4.4 31 99-130 18-48 (110)
148 2p1m_A SKP1-like protein 1A; F 24.4 48 0.0016 29.4 3.2 35 62-104 119-153 (160)
149 1tc3_C Protein (TC3 transposas 24.1 1.4E+02 0.0047 19.4 4.9 38 93-132 5-42 (51)
150 2rnj_A Response regulator prot 22.3 71 0.0024 25.0 3.5 43 94-139 30-72 (91)
151 1umq_A Photosynthetic apparatu 22.2 89 0.003 25.0 4.1 52 9-73 18-69 (81)
152 1ntc_A Protein (nitrogen regul 22.2 1.1E+02 0.0036 24.4 4.6 34 97-131 51-84 (91)
153 2dbb_A Putative HTH-type trans 21.7 1.2E+02 0.0042 25.6 5.2 42 97-139 9-51 (151)
154 2e1c_A Putative HTH-type trans 20.7 93 0.0032 27.6 4.4 41 97-138 27-68 (171)
155 1p4w_A RCSB; solution structur 20.7 1.8E+02 0.0061 23.7 5.7 46 91-139 32-77 (99)
156 3e7l_A Transcriptional regulat 20.6 1E+02 0.0034 22.8 3.9 33 97-130 19-51 (63)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=1.2e-32 Score=235.62 Aligned_cols=104 Identities=48% Similarity=0.932 Sum_probs=99.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWA 114 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs 114 (474)
.++||+||+|||++|+++|++||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 378999999999999999999999899999999986 9999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 115 RMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 115 ~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.||++|||||++|||+||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=2.1e-32 Score=235.63 Aligned_cols=104 Identities=29% Similarity=0.566 Sum_probs=100.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 011938 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMA 117 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IA 117 (474)
||+||+|||++|+++|.+||.++|..||..|++ |+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999999899999999997 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938 118 AHLPGRTDNEIKNYWNTRIKRRQRA 142 (474)
Q Consensus 118 k~LpGRT~~QcKnRW~~~Lkkk~r~ 142 (474)
++|+|||++|||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999998876543
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=5.7e-32 Score=240.62 Aligned_cols=106 Identities=44% Similarity=0.788 Sum_probs=102.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 011938 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMA 117 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IA 117 (474)
||+||+|||++|+++|.+||.++|..||+.|++ |+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999998899999999987 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhHHHcCC
Q 011938 118 AHLPGRTDNEIKNYWNTRIKRRQRAGL 144 (474)
Q Consensus 118 k~LpGRT~~QcKnRW~~~Lkkk~r~g~ 144 (474)
++|+|||++|||+||+++|+++...+.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999998876543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.3e-31 Score=237.11 Aligned_cols=105 Identities=34% Similarity=0.619 Sum_probs=100.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011938 32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN 111 (474)
Q Consensus 32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~ 111 (474)
..+..+||+||+|||++|+++|.+||. +|..||+.|++ |+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 346889999999999999999999999 99999999987 9999999999999999999999999999999999999999
Q ss_pred ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 112 KWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 112 kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
+|..||+.|+|||++|||+||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998765
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=1.3e-31 Score=236.95 Aligned_cols=106 Identities=46% Similarity=0.915 Sum_probs=102.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK 112 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k 112 (474)
.|.+++|+||+|||++|+++|++||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999999998899999999987 99999999999999999999999999999999999999999
Q ss_pred hHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 113 WARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 113 Ws~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
|..||++|||||+++||+||+.+++++
T Consensus 101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 101 WAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999998875
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.2e-29 Score=230.16 Aligned_cols=106 Identities=47% Similarity=0.910 Sum_probs=101.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNK 112 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~k 112 (474)
.|.+++|+||+|||++|+++|++||.++|..||+.|++ |+++||+.||.++|+|.+++++||+|||++|++++.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999998889999999987 99999999999999999999999999999999999999999
Q ss_pred hHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 113 WARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 113 Ws~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
|..||++|||||+++||+||+.+++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.5e-30 Score=234.76 Aligned_cols=118 Identities=28% Similarity=0.558 Sum_probs=69.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN-KW 113 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~-kW 113 (474)
.++|++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 467999999999999999999998899999999986 9999999999999999999999999999999999999996 69
Q ss_pred HHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhh
Q 011938 114 ARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSF 153 (474)
Q Consensus 114 s~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~ 153 (474)
..||+.|+|||+.||++||+++|.+.++++.+...++..+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 121 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 121 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHH
Confidence 9999999999999999999999998877665544333333
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-21 Score=154.75 Aligned_cols=67 Identities=30% Similarity=0.572 Sum_probs=64.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHH
Q 011938 32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEE 99 (474)
Q Consensus 32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED 99 (474)
.++.+++|+||+|||++|+++|++||.++|..||+.|++ |+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 467899999999999999999999998899999999996 9999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=2.8e-21 Score=170.78 Aligned_cols=92 Identities=25% Similarity=0.495 Sum_probs=61.4
Q ss_pred HhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHc
Q 011938 64 VQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRA 142 (474)
Q Consensus 64 IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~ 142 (474)
||+.|++ |+++||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|.+.+++
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7888987 9999999999999999999999999999999999999996 6999999999999999999999999988777
Q ss_pred CCCCCCchhhhhhh
Q 011938 143 GLPLYPPEVSFQAL 156 (474)
Q Consensus 143 g~~~~p~e~~~~~~ 156 (474)
+.+...++..+..+
T Consensus 80 ~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 80 TSWTEEEDRIIYQA 93 (128)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 66554444433333
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=4.4e-18 Score=164.80 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=92.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----hhHHhhhhCCccccccchhhhhhccCCCCC-----------------
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGN-----WNAVQKNSGLFRCGKSCRLRWANHLRPNLK----------------- 90 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~n-----W~~IAk~l~~~Rt~kQCR~RW~n~L~p~lk----------------- 90 (474)
...++|++||+|||++|+++|++||..+ |.+||+.|++ ||+.|||.||+++|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998743 9999999997 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 011938 91 ------------KGAFTQEEEQMIVELHAK-M--------------------------------GN-------------- 111 (474)
Q Consensus 91 ------------kg~WT~EED~~LieLv~k-~--------------------------------G~-------------- 111 (474)
+..||.|||..|+..+.+ | +.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999887 1 11
Q ss_pred -----------ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 112 -----------KWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 112 -----------kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.|.+||+.+|+||.+++|+||+..|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999988765
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.70 E-value=9.8e-18 Score=147.98 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=78.4
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC---CccccccchhhhhhccC-----CCCCCC-CCCHHHHHH
Q 011938 31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG---LFRCGKSCRLRWANHLR-----PNLKKG-AFTQEEEQM 101 (474)
Q Consensus 31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCR~RW~n~L~-----p~lkkg-~WT~EED~~ 101 (474)
..++..++++||.|||++|+++|++||.++|..|++.+. .+|++.+|++||+++++ |.+++| +|++||+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 345788899999999999999999999999999999862 24999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCChHH
Q 011938 102 IVELHAKMGNKWAR 115 (474)
Q Consensus 102 LieLv~k~G~kWs~ 115 (474)
|++++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=135.10 Aligned_cols=58 Identities=28% Similarity=0.376 Sum_probs=46.9
Q ss_pred chhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 011938 77 CRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR 135 (474)
Q Consensus 77 CR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~ 135 (474)
..-||.++|+|++++++||+|||++|+++|++||++|+.||+.| |||++|||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999964
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=1.5e-16 Score=140.55 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=74.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC---Cccccccchhhhhhcc-----CCCCCCCCCCHHH-HHH
Q 011938 31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG---LFRCGKSCRLRWANHL-----RPNLKKGAFTQEE-EQM 101 (474)
Q Consensus 31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCR~RW~n~L-----~p~lkkg~WT~EE-D~~ 101 (474)
..+...++++||.|||+.|+++|++||.++|..|++.+. .+|++.+|++||+|++ +|.++++.|+++| +.+
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 345677899999999999999999999999999999751 2499999999999999 8999999999999 899
Q ss_pred HHHHHHHhCCC
Q 011938 102 IVELHAKMGNK 112 (474)
Q Consensus 102 LieLv~k~G~k 112 (474)
|++++..||++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999975
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1e-16 Score=124.27 Aligned_cols=57 Identities=25% Similarity=0.440 Sum_probs=54.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLK 90 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lk 90 (474)
++.+++++||+|||++|+++|.+||.++|.+||+.|++ |++.|||+||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 57899999999999999999999998899999999987 9999999999999999876
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.3e-16 Score=128.18 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=58.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCC
Q 011938 85 LRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLY 147 (474)
Q Consensus 85 L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~ 147 (474)
.+|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.+++++.+.|.+..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~ 65 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE 65 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 578999999999999999999999999999999999999999999999999999887766543
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=125.59 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=57.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCC
Q 011938 84 HLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGL 144 (474)
Q Consensus 84 ~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~ 144 (474)
+|+|.+++++||+|||++|++++++||++|.+||+ |+|||++|||+||+++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999987653
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=1.3e-16 Score=120.30 Aligned_cols=52 Identities=50% Similarity=0.923 Sum_probs=49.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN 88 (474)
Q Consensus 36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~ 88 (474)
++||+||+|||++|+++|.+||.++|..||+.|++ |+++|||.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999999899999999987 99999999999999984
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=2e-16 Score=119.10 Aligned_cols=52 Identities=31% Similarity=0.643 Sum_probs=48.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN 88 (474)
Q Consensus 36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~ 88 (474)
+++++||+|||++|+++|++||.++|..||+.|++ |++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999999999999999987 99999999999999984
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=3e-16 Score=125.04 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCC-ccccccchhhhhhccCCCCCCCCCC
Q 011938 32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL-FRCGKSCRLRWANHLRPNLKKGAFT 95 (474)
Q Consensus 32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~-~Rt~kQCR~RW~n~L~p~lkkg~WT 95 (474)
..+..++++||+|||++|+++|++||.++|..||+.|+. +|++.|||+||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 346788999999999999999999998899999999982 3999999999999999999988764
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=6.9e-16 Score=119.56 Aligned_cols=55 Identities=25% Similarity=0.492 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~ 140 (474)
+|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999988653
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=121.91 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=57.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCC
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLY 147 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~ 147 (474)
.+.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.++++.+..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~ 66 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSG 66 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCCh
Confidence 4678999999999999999999999 7999999999999999999999999999887765543
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=2.1e-15 Score=113.51 Aligned_cols=50 Identities=30% Similarity=0.577 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999999874
No 23
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=1.1e-15 Score=120.71 Aligned_cols=56 Identities=36% Similarity=0.539 Sum_probs=49.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCC-ccccccchhhhhhccCCCCC
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGL-FRCGKSCRLRWANHLRPNLK 90 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~-~Rt~kQCR~RW~n~L~p~lk 90 (474)
..+|++||+|||++|+++|++||.++|..||+.++. +|++.|||+||+++++++++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 457899999999999999999999999999998762 49999999999999998764
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=3.5e-15 Score=112.45 Aligned_cols=50 Identities=34% Similarity=0.741 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 599999999999999999999998864
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=2.9e-15 Score=116.46 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=51.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN 88 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~ 88 (474)
.+.+++++||+|||++|+++|++||.++|.+||+.|++ |+++|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 36789999999999999999999998799999999997 99999999999999865
No 26
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=120.83 Aligned_cols=61 Identities=21% Similarity=0.394 Sum_probs=57.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCC
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMG------NKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPL 146 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G------~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~ 146 (474)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+++|++..+.|.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~ 69 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPV 69 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 5788999999999999999999999 789999999999999999999999999988887764
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=6.5e-15 Score=111.57 Aligned_cols=50 Identities=28% Similarity=0.478 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhH
Q 011938 90 KKGAFTQEEEQMIVELHAKMG-NKWARMAAHLP--GRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G-~kWs~IAk~Lp--GRT~~QcKnRW~~~Lkkk 139 (474)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 579999999999999999999 69999999999 999999999999998753
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.54 E-value=5.6e-15 Score=117.68 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=53.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHHhhhHHHc
Q 011938 84 HLRPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLP--GRTDNEIKNYWNTRIKRRQRA 142 (474)
Q Consensus 84 ~L~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~Lp--GRT~~QcKnRW~~~Lkkk~r~ 142 (474)
...+..++++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||+++|++.+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 346678899999999999999999999 69999999999 999999999999999987654
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=5.8e-15 Score=111.84 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=46.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC--CccccccchhhhhhccC
Q 011938 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG--LFRCGKSCRLRWANHLR 86 (474)
Q Consensus 37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCR~RW~n~L~ 86 (474)
++|+||+|||++|+++|.+||.++|..||+.++ + |++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 5 999999999999875
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.1e-14 Score=113.22 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
.+.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7999999999999999999999998764
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1e-14 Score=112.80 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=47.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938 34 VILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85 (474)
Q Consensus 34 p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L 85 (474)
..+.+++||+|||++|+++|++||.++|.+||+.|+++|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999998899999999993499999999999875
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.6e-15 Score=118.17 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=55.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC-----CChhHHhhhhCCccccccchhhhhhccCCCCCCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGE-----GNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGA 93 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~-----~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~ 93 (474)
+|.+++++||+|||++|+++|.+||. .+|.+||+.|++ |++.|||.||+++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 699999999997 9999999999999998777664
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6e-15 Score=116.44 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=52.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKG 92 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg 92 (474)
.|.+++++||+|||++|+++|++||. +|.+||+ +.+ |+++|||.||.++|+|.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 47899999999999999999999999 9999999 655 999999999999999876654
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.47 E-value=5.4e-14 Score=111.07 Aligned_cols=51 Identities=31% Similarity=0.484 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCC--CCCHHHHHHHHHHHhhhH
Q 011938 89 LKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLP--GRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 89 lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~Lp--GRT~~QcKnRW~~~Lkkk 139 (474)
.++++||+|||++|+++|.+||. +|..||+.++ |||+.|||+||++++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 47899999999999999999994 8999999865 999999999999988753
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.45 E-value=2.6e-14 Score=114.81 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCC
Q 011938 32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKK 91 (474)
Q Consensus 32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkk 91 (474)
.+|.+++++||+|||++|+++|++||. +|..||+.|++ |++.||+.||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999 99999999997 99999999999999876655
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.44 E-value=9.3e-14 Score=107.37 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC-CCCHHHHHHHHHHHh
Q 011938 87 PNLKKGAFTQEEEQMIVELHAKMG-NKWARMAAHLP-GRTDNEIKNYWNTRI 136 (474)
Q Consensus 87 p~lkkg~WT~EED~~LieLv~k~G-~kWs~IAk~Lp-GRT~~QcKnRW~~~L 136 (474)
..+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999 89999999999 999999999998864
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=121.79 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=53.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 84 HLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 84 ~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.+.|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988875
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.42 E-value=7e-14 Score=123.33 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhcccC
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNIN 165 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~~~ 165 (474)
.+..++|+||+|||++|+++|.+||.+|..||+.|+|||..||+.||+++|.+.++++.+...++..+..+....+..+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999888776555544444444333343333
Q ss_pred Ccc
Q 011938 166 GIN 168 (474)
Q Consensus 166 ~~~ 168 (474)
.+.
T Consensus 86 ~Ia 88 (126)
T 3osg_A 86 IIA 88 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.40 E-value=9.3e-14 Score=118.31 Aligned_cols=69 Identities=25% Similarity=0.471 Sum_probs=58.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhh
Q 011938 88 NLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQAL 156 (474)
Q Consensus 88 ~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~ 156 (474)
++++|+||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.++++.+...++..+..+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 468999999999999999999997 699999999999999999999999998877765554444433333
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.39 E-value=2.2e-13 Score=117.54 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=68.3
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC---Cccccccchhhhhhcc-----CCCCCCCCCCHHHHHH-
Q 011938 31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG---LFRCGKSCRLRWANHL-----RPNLKKGAFTQEEEQM- 101 (474)
Q Consensus 31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCR~RW~n~L-----~p~lkkg~WT~EED~~- 101 (474)
..+...++++||.|||++|+++|++||.++|..|++.+. .+||+.+|++||++++ +|.+++|.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 345788899999999999999999999999999999762 2499999999999998 6899999888777655
Q ss_pred HHHHHHHhCC
Q 011938 102 IVELHAKMGN 111 (474)
Q Consensus 102 LieLv~k~G~ 111 (474)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.37 E-value=6.8e-13 Score=110.02 Aligned_cols=69 Identities=23% Similarity=0.461 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhh----hCCccccccchhhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 011938 39 GPWTSAEDAILIDYVKKHGEGNWNAVQKN----SGLFRCGKSCRLRWANHL-----RPNLKKG-AFTQEEEQMIVELHAK 108 (474)
Q Consensus 39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~----l~~~Rt~kQCR~RW~n~L-----~p~lkkg-~WT~EED~~LieLv~k 108 (474)
++||+|||++|+++|++||.|+|..|++. +++ ||+.+|++||+|++ .|.+++| +...++..+++.|++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999996 665 99999999999988 6766655 6778888889988875
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=108.08 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCC
Q 011938 33 GVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKK 91 (474)
Q Consensus 33 ~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkk 91 (474)
.|.++||+||+|||++|+++|++||. +|.+||+.| + |++.||+.||.. |....+.
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 58999999999999999999999998 699999999 5 999999999985 5444443
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.33 E-value=1.2e-12 Score=106.12 Aligned_cols=52 Identities=12% Similarity=0.334 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIK 137 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~Lk 137 (474)
.+...+++||.|||.+|++++.+|| ++|.+||++|||||.+|||+||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456889999999999999999999 689999999999999999999998765
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.31 E-value=6e-13 Score=118.00 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhhhhhhhcccCCcc
Q 011938 91 KGAFTQEEEQMIVELHAKMG-NKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQALQESQCQNINGIN 168 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G-~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~~~~~~q~~~~~~ 168 (474)
+|+||+|||++|+++|.+|| .+|..||..|+|||+.||+.||.++|.+.++++.+...++..+..+....+..+..+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 78999999999999999999 6799999999999999999999999999888876554444444444333343333333
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.30 E-value=7.6e-13 Score=113.47 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHHHcCCCCCCchhhhhhh
Q 011938 91 KGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSFQAL 156 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r~g~~~~p~e~~~~~~ 156 (474)
+|+||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.++++.+...++..+..+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence 589999999999999999996 799999999999999999999999999887766554444444333
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=106.17 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=47.9
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhc
Q 011938 31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH 84 (474)
Q Consensus 31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~ 84 (474)
.+.....+++||+|||++|+++|++|| ++|.+||+++++ |++.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 345667789999999999999999999 699999999997 9999999999998
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=105.84 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 011938 88 NLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR 135 (474)
Q Consensus 88 ~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~ 135 (474)
...+++||+|||++|++++++||++|.+||++|++||+.||++||+++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999765
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=7.8e-12 Score=103.63 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhhH
Q 011938 92 GAFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 92 g~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lkkk 139 (474)
++||+|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999998 89999985 89999999999999999743
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.24 E-value=4.1e-12 Score=102.94 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccC
Q 011938 30 TARGVILKKGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLR 86 (474)
Q Consensus 30 ~~~~p~lkKg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~ 86 (474)
....+...+++||++||++|+++|.+||. .+|.+||+.|++ |+.+||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34456778999999999999999999993 489999999997 999999999998765
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.23 E-value=8.2e-12 Score=110.21 Aligned_cols=66 Identities=24% Similarity=0.465 Sum_probs=55.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhh-----hHHHcCCCCCCchh
Q 011938 85 LRPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIK-----RRQRAGLPLYPPEV 151 (474)
Q Consensus 85 L~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lk-----kk~r~g~~~~p~e~ 151 (474)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++ +.++++. ..++++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~-~~p~e~ 86 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGE-PVPQDL 86 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCS-CCCHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCC-CCCHHH
Confidence 456778999999999999999999998 99999987 489999999999999998 4445532 345543
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=1.2e-11 Score=106.65 Aligned_cols=67 Identities=25% Similarity=0.469 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccC----CCCCHHHHHHHHHHHhh-----hHHHcCCCCCCchhhh
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAHL----PGRTDNEIKNYWNTRIK-----RRQRAGLPLYPPEVSF 153 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~L----pGRT~~QcKnRW~~~Lk-----kk~r~g~~~~p~e~~~ 153 (474)
....++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+++++ +.++++.++ |.+...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~-P~~~l~ 84 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPV-PQELLN 84 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSC-CCHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCC-CHHHHH
Confidence 34568999999999999999999997 999999865 89999999999999996 445555444 444433
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=8.9e-13 Score=110.28 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=51.0
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCC
Q 011938 31 ARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP 87 (474)
Q Consensus 31 ~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p 87 (474)
...+.+++|+||+|||++|+++|.+||. +|..||+.|++ |++.||+.||.++|+.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 4457899999999999999999999999 89999999997 9999999999998864
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=1.8e-11 Score=96.04 Aligned_cols=49 Identities=22% Similarity=0.414 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHh---ccCCCCCHHHHHHHHHHHhhh
Q 011938 90 KKGAFTQEEEQMIVELHAKMGNKWARMA---AHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~kWs~IA---k~LpGRT~~QcKnRW~~~Lkk 138 (474)
++.+||+|||+.|+++|++||.+|..|+ .++++||..+||+||+++.|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6889999999999999999999999999 678999999999999998764
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.18 E-value=1.4e-11 Score=119.53 Aligned_cols=55 Identities=24% Similarity=0.517 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938 87 PNLKKGAFTQEEEQMIVELHAKMGNK------WARMAAHLPGRTDNEIKNYWNTRIKRRQR 141 (474)
Q Consensus 87 p~lkkg~WT~EED~~LieLv~k~G~k------Ws~IAk~LpGRT~~QcKnRW~~~Lkkk~r 141 (474)
+.+++++||+|||++|+++|+++|++ |.+||++|+|||++|||+||+++|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999985 99999999999999999999999998754
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.14 E-value=5.4e-11 Score=100.59 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhhH--HHcCC
Q 011938 90 KKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIKRR--QRAGL 144 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk--~r~g~ 144 (474)
.+++||.|||++|++++.+|| ++|.+||+.|||||.+|||+||+.+++.. +..|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~ 67 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 467999999999999999996 67999999999999999999999988764 34454
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=5.3e-11 Score=105.21 Aligned_cols=53 Identities=23% Similarity=0.458 Sum_probs=47.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHHhhh
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMGN-KWARMAAH----LPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G~-kWs~IAk~----LpGRT~~QcKnRW~~~Lkk 138 (474)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.|||+||+++++.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 33457899999999999999999997 89999986 4899999999999999963
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.1e-09 Score=83.69 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938 90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIK 137 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lk 137 (474)
..++||+||++++++++.+||++|..||..|++||..||+.+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999977543
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.88 E-value=6.8e-10 Score=93.82 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhcc
Q 011938 38 KGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHL 85 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L 85 (474)
+++||+|||++|++++.+|+. .+|.+||+.+++ |+.+||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 579999999999999999983 479999999997 99999999999864
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.84 E-value=4.2e-09 Score=88.96 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=59.2
Q ss_pred cccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccC-----CCCCHHHHHHHHHHHhhhHHHcC
Q 011938 74 GKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHL-----PGRTDNEIKNYWNTRIKRRQRAG 143 (474)
Q Consensus 74 ~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~L-----pGRT~~QcKnRW~~~Lkkk~r~g 143 (474)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++..+..
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34578999999976 89999999999999999999999999999 58999999999999888776543
No 60
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=8.4e-09 Score=99.41 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=56.2
Q ss_pred ChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 60 NWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 60 nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
+|+++-..+.. ++...+ .+++.--......++||+||++++++++.+||++|..||+.|++||..|||++|++..|+
T Consensus 104 ~~kQ~~~~L~~-~~~~~I-e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALKE-KLDGGI-EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHH-HSTTTT-GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHH-HHHhhc-ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 55555555532 333222 233331112234678999999999999999999999999999999999999999987654
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=1.1e-08 Score=82.48 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 88 NLKKGAFTQEEEQMIVELHAKMG----NKWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 88 ~lkkg~WT~EED~~LieLv~k~G----~kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
..+.+.||.|||++|.+++++|+ ++|.+||++| |||..||++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999997 5699999998 99999999999987654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.4e-08 Score=79.01 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=44.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR 86 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~ 86 (474)
....++||+||++++++++.+||. +|..||+.+++ |+..||+.+|....+
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLTKK 58 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHhcC
Confidence 345689999999999999999997 99999999997 999999999976543
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.67 E-value=1e-08 Score=80.54 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhHHhh---hhCCccccccchhhhhhccCC
Q 011938 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQK---NSGLFRCGKSCRLRWANHLRP 87 (474)
Q Consensus 37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk---~l~~~Rt~kQCR~RW~n~L~p 87 (474)
++.+||+|||+.|++.|++||. +|..|+. .+. +|+...+++||++..+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 6789999999999999999999 9999995 444 49999999999997653
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.47 E-value=7.6e-08 Score=101.83 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHh
Q 011938 92 GAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRI 136 (474)
Q Consensus 92 g~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~L 136 (474)
..||+||-+++++++.+||.+|..||+.++.||..|||++|.+..
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999997543
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.45 E-value=1e-07 Score=76.94 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=43.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccC
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLR 86 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~ 86 (474)
..+++.||.|||++|.+++.+|+. ..|.+||+.+| |+..+|+.||..+.+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 344679999999999999999984 47999999983 999999999987654
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.41 E-value=1.2e-07 Score=73.67 Aligned_cols=48 Identities=31% Similarity=0.572 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCChhHHhh-hhCCccccccchhhhhhccC
Q 011938 38 KGPWTSAEDAILIDYVKKH--------GEGNWNAVQK-NSGLFRCGKSCRLRWANHLR 86 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~ky--------G~~nW~~IAk-~l~~~Rt~kQCR~RW~n~L~ 86 (474)
+.+||.|||++|+++|.+| |..-|+.+++ .++. |+..+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5689999999999999999 4446999999 7775 999999999999885
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.37 E-value=3.4e-07 Score=71.09 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hHHHhc-cCCCCCHHHHHHHHHHHhh
Q 011938 91 KGAFTQEEEQMIVELHAKM--------GNK-WARMAA-HLPGRTDNEIKNYWNTRIK 137 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~--------G~k-Ws~IAk-~LpGRT~~QcKnRW~~~Lk 137 (474)
|.+||+|||+.|++.|.++ |++ |.+||+ .+++||-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 555 999999 8999999999999988764
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.35 E-value=3.4e-07 Score=74.12 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938 90 KKGAFTQEEEQMIVELHAKMGN----KWARMAAHLPGRTDNEIKNYWNTRIK 137 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~----kWs~IAk~LpGRT~~QcKnRW~~~Lk 137 (474)
....||.+|+.+|.+++..|+. +|.+||..++|||..+|+.||..+++
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3468999999999999999984 59999999999999999999998744
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.27 E-value=4.7e-07 Score=73.30 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhCCccccccchhhhhhccCC
Q 011938 38 KGPWTSAEDAILIDYVKKHGE---GNWNAVQKNSGLFRCGKSCRLRWANHLRP 87 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p 87 (474)
...||.+|+++|.+++..|+. ++|.+||..+++ |+..+|+.||..+++-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence 357999999999999999986 479999999998 9999999999987653
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.25 E-value=6.9e-07 Score=86.17 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=46.0
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccC
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLR 86 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~ 86 (474)
....++||.||++++++++.+||. +|..||+.+++ |+..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345779999999999999999998 99999999998 999999999998765
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1e-05 Score=63.30 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=45.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHHH
Q 011938 86 RPNLKKGAFTQEEEQMIVELHAKMGNKWARMAA-HLPGRTDNEIKNYWNTR 135 (474)
Q Consensus 86 ~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk-~LpGRT~~QcKnRW~~~ 135 (474)
.|.++...||+||-++..+.+.+||.+|..|++ .|++||..||..+|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 467788899999999999999999999999998 69999999999988653
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.90 E-value=3.8e-05 Score=77.25 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=79.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchh-------hhhhc---------------------------
Q 011938 39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRL-------RWANH--------------------------- 84 (474)
Q Consensus 39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~-------RW~n~--------------------------- 84 (474)
+.||..|...++.++.+||..+|..||..+++ ++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999986 88777642 22100
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHHhc------------cCCCCCHHHHHHHH
Q 011938 85 -------------L---RPNLKKGAFTQEEEQMIVELHAKMGN----KWARMAA------------HLPGRTDNEIKNYW 132 (474)
Q Consensus 85 -------------L---~p~lkkg~WT~EED~~LieLv~k~G~----kWs~IAk------------~LpGRT~~QcKnRW 132 (474)
| -+..++..||++||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01224567999999999999999996 4999962 34679999999999
Q ss_pred HHHhhhHH
Q 011938 133 NTRIKRRQ 140 (474)
Q Consensus 133 ~~~Lkkk~ 140 (474)
+.+++--.
T Consensus 270 ~tLi~~ie 277 (304)
T 1ofc_X 270 NTLITLIE 277 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987543
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.90 E-value=1.1e-05 Score=67.66 Aligned_cols=49 Identities=14% Similarity=0.336 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938 93 AFTQEEEQMIVELHAKMGN---KWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141 (474)
Q Consensus 93 ~WT~EED~~LieLv~k~G~---kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r 141 (474)
-||.|||+.|+..+++-|. .|..||+.|.+|+.+||++||+.+++=-.+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999987 699999999999999999999998764443
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.88 E-value=2.6e-05 Score=65.79 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=53.2
Q ss_pred hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCC-----CCCHHHHHHHHHHHhhhHHHcCCC
Q 011938 79 LRWANHLRPNLKKGAFTQEEEQMIVELHAKMGNKWARMAAHLP-----GRTDNEIKNYWNTRIKRRQRAGLP 145 (474)
Q Consensus 79 ~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~kWs~IAk~Lp-----GRT~~QcKnRW~~~Lkkk~r~g~~ 145 (474)
+.|..+|. ...||.||...|++|+++|.-+|..|+..+. .||-.++|.||..+.++..+...+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~ 89 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 45666665 3689999999999999999999999998773 799999999999998888766544
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.96 E-value=3.5e-06 Score=67.10 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHHhh
Q 011938 93 AFTQEEEQMIVELHAKMGN---KWARMAAHLPGRTDNEIKNYWNTRIK 137 (474)
Q Consensus 93 ~WT~EED~~LieLv~k~G~---kWs~IAk~LpGRT~~QcKnRW~~~Lk 137 (474)
.||.|||+.|+..+++-|. .|+.||+.| +|+.+||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 699999999 9999999999998765
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.76 E-value=5.1e-06 Score=67.19 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHH
Q 011938 91 KGAFTQEEEQMIVELHAKMGN----KWARMAAHLPGRTDNEIKNYWN 133 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G~----kWs~IAk~LpGRT~~QcKnRW~ 133 (474)
...||.||+++|.++.++|+. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 6999999999999999999884
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.74 E-value=4.8e-06 Score=67.33 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---ChhHHhhhhCCccccccchhhhh
Q 011938 38 KGPWTSAEDAILIDYVKKHGEG---NWNAVQKNSGLFRCGKSCRLRWA 82 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCR~RW~ 82 (474)
.+.||.+|+++|.+++.+|+.+ .|.+||+.+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4589999999999999999864 79999999997 99999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=5.8e-05 Score=59.02 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=44.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhh-hhCCccccccchhhhhhc
Q 011938 32 RGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQK-NSGLFRCGKSCRLRWANH 84 (474)
Q Consensus 32 ~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCR~RW~n~ 84 (474)
..|.++...||+||-++..+.+.+||. +|..|++ .++. |+..+|...|...
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhcc
Confidence 346778889999999999999999999 9999999 4887 9999998877653
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.48 E-value=0.00014 Score=61.20 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHH
Q 011938 91 KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTR 135 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~ 135 (474)
...||+||.++..+.+..||.+|..||..|++||..+|-.+|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 457999999999999999999999999999999999999988653
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.47 E-value=0.0002 Score=57.15 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHH
Q 011938 90 KKGAFTQEEEQMIVELHAKMGNKWARMAA-HLPGRTDNEIKNYWNT 134 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~kWs~IAk-~LpGRT~~QcKnRW~~ 134 (474)
....||+||-.+..+.+.+||.+|..|++ .|++||..+|..+|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34589999999999999999999999999 5999999999999874
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.34 E-value=0.00016 Score=76.77 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=44.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc
Q 011938 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85 (474)
Q Consensus 36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L 85 (474)
....+||.+|-+++++++.+||. +|..||+.+++ |+..|||.+|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 45689999999999999999998 99999999998 99999999998654
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.23 E-value=0.00021 Score=60.34 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=42.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC----Cccccccchhhhhhcc
Q 011938 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG----LFRCGKSCRLRWANHL 85 (474)
Q Consensus 36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCR~RW~n~L 85 (474)
++..+||.||++.|++++++|+. .|..|+..+. .+|+..+.+.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34489999999999999999998 9999999983 2499999999998754
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.18 E-value=0.00029 Score=57.67 Aligned_cols=50 Identities=14% Similarity=0.441 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------ChHHHhccCC----CCCHHHHHHHHHHHhhhH
Q 011938 90 KKGAFTQEEEQMIVELHAKMGN----------KWARMAAHLP----GRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~----------kWs~IAk~Lp----GRT~~QcKnRW~~~Lkkk 139 (474)
+...||.+|-..||+++..+.. .|..||..|. .||+.||+++|.++.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999976421 4999998873 699999999999976653
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.91 E-value=0.00025 Score=58.08 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=39.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CChhHHhhhhC---Cccccccchhhhhhcc
Q 011938 37 KKGPWTSAEDAILIDYVKKHGE---------GNWNAVQKNSG---LFRCGKSCRLRWANHL 85 (474)
Q Consensus 37 kKg~WT~EED~~L~~lV~kyG~---------~nW~~IAk~l~---~~Rt~kQCR~RW~n~L 85 (474)
+...||.+|-.+|+++...+.. ..|..||..|. ..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999976421 15999998863 4699999999998754
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.83 E-value=0.00074 Score=56.83 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=40.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhh
Q 011938 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWAN 83 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n 83 (474)
...||+||.++..+....||. +|..||+.++. |+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHhc
Confidence 468999999999999999998 99999999997 999999887764
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.79 E-value=0.00094 Score=53.22 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=40.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhHHhh-hhCCccccccchhhhhh
Q 011938 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQK-NSGLFRCGKSCRLRWAN 83 (474)
Q Consensus 37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCR~RW~n 83 (474)
....||+||-++..+.+.+||. +|..|++ .+++ |+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 3458999999999999999999 9999999 5887 999999887764
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.79 E-value=0.0022 Score=66.13 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchh-------hhhhc---------------------------
Q 011938 39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRL-------RWANH--------------------------- 84 (474)
Q Consensus 39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~-------RW~n~--------------------------- 84 (474)
+.||..|=..++.++.+||..+-..||..|+++++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999973377666551 11100
Q ss_pred -------------c----CCC-CCCCCCCHHHHHHHHHHHHHhCC----ChHHHhcc------------CCCCCHHHHHH
Q 011938 85 -------------L----RPN-LKKGAFTQEEEQMIVELHAKMGN----KWARMAAH------------LPGRTDNEIKN 130 (474)
Q Consensus 85 -------------L----~p~-lkkg~WT~EED~~LieLv~k~G~----kWs~IAk~------------LpGRT~~QcKn 130 (474)
| .+. .++..||++||..|+-++.+||- .|.+|-.. +..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 000 13457999999999999999994 49999432 35699999999
Q ss_pred HHHHHhhhHHHcC
Q 011938 131 YWNTRIKRRQRAG 143 (474)
Q Consensus 131 RW~~~Lkkk~r~g 143 (474)
|.+.+++--.|..
T Consensus 284 Rc~tLi~~IeKE~ 296 (374)
T 2y9y_A 284 RGNTLLQCLEKEF 296 (374)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999988655543
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.70 E-value=0.0059 Score=57.16 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHhC-CChHHHhc--cC------------CCCCHHHHHHHHHHHhhhH
Q 011938 93 AFTQEEEQMIVELHAKMG-NKWARMAA--HL------------PGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 93 ~WT~EED~~LieLv~k~G-~kWs~IAk--~L------------pGRT~~QcKnRW~~~Lkkk 139 (474)
.||.+||..|+..+.+|| .+|.+|.. .| ..++...+..|-..+|+-.
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 599999999999999999 78999963 11 1256778999988877643
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.41 E-value=0.002 Score=54.02 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CChhHHhhhhCCccccccchhhhhh
Q 011938 38 KGPWTSAEDAILIDYVKKHGE--GNWNAVQKNSGLFRCGKSCRLRWAN 83 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCR~RW~n 83 (474)
---||.|||..++...++.|. ..|..||+.+++ |+..|+++|++.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 347999999999999999985 479999999986 999999999976
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.68 E-value=0.0018 Score=51.61 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChhHHhhhhCCccccccchhhhhhccC
Q 011938 40 PWTSAEDAILIDYVKKHGE--GNWNAVQKNSGLFRCGKSCRLRWANHLR 86 (474)
Q Consensus 40 ~WT~EED~~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCR~RW~n~L~ 86 (474)
.||.|||..|+..+++.|. ..|..||+.+ + |++.|+..||+..+.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999886 4799999999 3 999999999987553
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.68 E-value=0.026 Score=47.54 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=41.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhC----Cccccccchhhhhhcc
Q 011938 36 LKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSG----LFRCGKSCRLRWANHL 85 (474)
Q Consensus 36 lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCR~RW~n~L 85 (474)
++...||.||...|.+++++|.- .|-.|+.... ..|+..+.+.||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999998 9999998874 2488899999998754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.64 E-value=0.07 Score=42.00 Aligned_cols=51 Identities=8% Similarity=0.017 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---hHHHhccC--CCCCHHHHHHHHHHHhhhH
Q 011938 89 LKKGAFTQEEEQMIVELHAKMGNK---WARMAAHL--PGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 89 lkkg~WT~EED~~LieLv~k~G~k---Ws~IAk~L--pGRT~~QcKnRW~~~Lkkk 139 (474)
..+-.||+|..++.++++.++|.. |..|.+.| +|.|..+|+.+.+.+....
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999965 78998776 6899999999988765443
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.22 E-value=0.14 Score=51.53 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 91 KGAFTQEEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
-+.||..+...++.++.+||. .|..||..|+|+|..+|+.++....++-
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 357999999999999999997 5999999999999999988877766543
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.35 E-value=0.24 Score=46.12 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CChHHHhc--cCCCCCHHHHHHHHHHHhhhHH
Q 011938 90 KKGAFTQEEEQMIVELHAKMG---NKWARMAA--HLPGRTDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G---~kWs~IAk--~LpGRT~~QcKnRW~~~Lkkk~ 140 (474)
....||+.|-..|++++.+|| .+|..|++ .|.+||..+|+.++...+....
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~ 61 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI 61 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 47999985 4789999999998887776543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.00 E-value=0.19 Score=49.61 Aligned_cols=28 Identities=36% Similarity=0.639 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhh
Q 011938 39 GPWTSAEDAILIDYVKKHGEGNWNAVQK 66 (474)
Q Consensus 39 g~WT~EED~~L~~lV~kyG~~nW~~IAk 66 (474)
..|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3699999999999999999999999975
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.91 E-value=0.68 Score=36.36 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=38.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--ChhHHhhhhCC-ccccccchhhhhh
Q 011938 35 ILKKGPWTSAEDAILIDYVKKHGEG--NWNAVQKNSGL-FRCGKSCRLRWAN 83 (474)
Q Consensus 35 ~lkKg~WT~EED~~L~~lV~kyG~~--nW~~IAk~l~~-~Rt~kQCR~RW~n 83 (474)
...+-.||+|..++.+++|.+.|.. .|+.|.+.|+. +.|..+++-|.++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4456789999999999999999952 38899999875 3577777665554
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.61 E-value=4.5 Score=39.87 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CChHHHh--ccCCCCCHHHHHHHHHHHhhhHHH
Q 011938 91 KGAFTQEEEQMIVELHAKMG---NKWARMA--AHLPGRTDNEIKNYWNTRIKRRQR 141 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G---~kWs~IA--k~LpGRT~~QcKnRW~~~Lkkk~r 141 (474)
++.||+.|-+.|++.+.+|| .+|..|+ ..|..|+...++.-++.++...+.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~ 58 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD 58 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 4799996 457899999999999888776543
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=65.36 E-value=3.7 Score=35.78 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=39.3
Q ss_pred HHHHHHHHhC-------CCChhHHhhhhCCcccc----ccchhhhhhccCCCCCCCCCCHHHHHHHHHHHH
Q 011938 48 ILIDYVKKHG-------EGNWNAVQKNSGLFRCG----KSCRLRWANHLRPNLKKGAFTQEEEQMIVELHA 107 (474)
Q Consensus 48 ~L~~lV~kyG-------~~nW~~IAk~l~~~Rt~----kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~ 107 (474)
+|..+|.+.| .+.|.+||..++...+. ...|..|.++|.+-- .++++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 4555555555 24799999999874432 356888988887632 377888888876654
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=61.23 E-value=4.4 Score=34.62 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhCCccccccchhhhhhccCC
Q 011938 48 ILIDYVKKHGE-------GNWNAVQKNSGLFRCGKSCRLRWANHLRP 87 (474)
Q Consensus 48 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p 87 (474)
+|..+|.+.|. +.|..||..++. -.+...+..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 68888888873 489999999998 4478888889888865
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=59.03 E-value=15 Score=37.71 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-hHHHhccCC-CCCHHHHHHHHHHHhhh
Q 011938 92 GAFTQEEEQMIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 92 g~WT~EED~~LieLv~k~G~k-Ws~IAk~Lp-GRT~~QcKnRW~~~Lkk 138 (474)
+.||.-+=..++.++.+||.. -..||..|. |+|..+|+.+.+...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 579999999999999999975 999999997 99999999665555443
No 101
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.43 E-value=12 Score=27.50 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 97 EEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 97 EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
+.+..++.++-..|-.+.+||..| |-+...|+.+....+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455566667667788999999999 889999998877655443
No 102
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=56.97 E-value=7 Score=32.74 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc----cccchhhhhhccCC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC----GKSCRLRWANHLRP 87 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt----~kQCR~RW~n~L~p 87 (474)
-+|..+|.+.|. +.|.+||..++...+ +.+.+..|.++|-+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 467888888872 489999999986432 35678888888876
No 103
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=55.30 E-value=79 Score=27.14 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=43.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhcc------CCCCC----CCCCCHHHHHHHHHHHH
Q 011938 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL------RPNLK----KGAFTQEEEQMIVELHA 107 (474)
Q Consensus 38 Kg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L------~p~lk----kg~WT~EED~~LieLv~ 107 (474)
..+.|.++-..++.++. .|. ...+||+.++. +. ..-.||.+.. .+..+ ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~-~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SH-GCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CS-HHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CH-HHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789998888888885 455 88999999974 32 3334454432 22211 23578888888888876
Q ss_pred Hh
Q 011938 108 KM 109 (474)
Q Consensus 108 k~ 109 (474)
+.
T Consensus 98 ~~ 99 (159)
T 2k27_A 98 QN 99 (159)
T ss_dssp HC
T ss_pred HC
Confidence 64
No 104
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=54.69 E-value=65 Score=27.21 Aligned_cols=68 Identities=10% Similarity=0.192 Sum_probs=44.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhc------cCCCCC----CCCCCHHHHHHHHHHH
Q 011938 37 KKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANH------LRPNLK----KGAFTQEEEQMIVELH 106 (474)
Q Consensus 37 kKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~------L~p~lk----kg~WT~EED~~LieLv 106 (474)
...+.|.++-..++.++. .|. ...+||+.++. +. ..-.||.+. +.+... ....++++.+.|++++
T Consensus 29 ~~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~-~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SH-GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp TTSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CH-HHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CH-HHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 345799999888888884 454 78999999984 32 223344332 223222 2347888888888888
Q ss_pred HHh
Q 011938 107 AKM 109 (474)
Q Consensus 107 ~k~ 109 (474)
.+.
T Consensus 104 ~~~ 106 (149)
T 1k78_A 104 RQN 106 (149)
T ss_dssp HHC
T ss_pred HhC
Confidence 764
No 105
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=52.08 E-value=17 Score=27.55 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHH----hCCChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938 97 EEEQMIVELHAK----MGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 97 EED~~LieLv~k----~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~ 140 (474)
+.+..++.++-. .|..|.+||..| |-+...|+.+....+++..
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344555555554 567899999999 9999999998877665544
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.57 E-value=10 Score=32.43 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc---cccchhhhhhccCC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC---GKSCRLRWANHLRP 87 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt---~kQCR~RW~n~L~p 87 (474)
-+|..+|.+.|. +.|.+|+..++...+ +.+.|..|.++|-|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 468888888873 479999999987432 34567777777654
No 107
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.91 E-value=9.7 Score=32.46 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 101 MIVELHAKMGN--------KWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 101 ~LieLv~k~G~--------kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
+|..+|.+.|. +|.+||+.|.--....+|..|.++|-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 47777777773 6999999985444789999998888654
No 108
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=48.78 E-value=22 Score=28.09 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 97 EEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 97 EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
+.++.++.++...|-.-.+||+.| |.+...|+.+....+++.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345566677667788899999999 899999999887765554
No 109
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.36 E-value=22 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=29.0
Q ss_pred HHHHHHHHHhC--------CChHHHhccCCCCC----HHHHHHHHHHHhhhH
Q 011938 100 QMIVELHAKMG--------NKWARMAAHLPGRT----DNEIKNYWNTRIKRR 139 (474)
Q Consensus 100 ~~LieLv~k~G--------~kWs~IAk~LpGRT----~~QcKnRW~~~Lkkk 139 (474)
-+|..+|.+.| ++|.+||+.|.--. ..++|..|.++|-.-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 34667777777 36999999994322 578899998887654
No 110
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.96 E-value=17 Score=27.04 Aligned_cols=41 Identities=7% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHH----HhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 98 EEQMIVELHA----KMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 98 ED~~LieLv~----k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.+..++.++- ..|..+.+||+.| |-+...|+.+....+++.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4445555554 3477899999999 999999999887766554
No 111
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.13 E-value=19 Score=30.69 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCC--------ChHHHhccCCCCC----HHHHHHHHHHHhhhH
Q 011938 100 QMIVELHAKMGN--------KWARMAAHLPGRT----DNEIKNYWNTRIKRR 139 (474)
Q Consensus 100 ~~LieLv~k~G~--------kWs~IAk~LpGRT----~~QcKnRW~~~Lkkk 139 (474)
-+|..+|.+.|. +|.+||+.|.--. ..++|..|.++|-.-
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357777777773 6999999983322 578899998877653
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=45.30 E-value=10 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc---cccchhhhhhccCC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC---GKSCRLRWANHLRP 87 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt---~kQCR~RW~n~L~p 87 (474)
-+|..+|.+.|. +.|.+||..++...+ +.+.|..|.++|.+
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 467788888873 489999999987432 34567777777643
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=44.42 E-value=34 Score=30.29 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCC--------ChHHHhccCCC--C---CHHHHHHHHHHHhhhHHHcCCCCCCch
Q 011938 100 QMIVELHAKMGN--------KWARMAAHLPG--R---TDNEIKNYWNTRIKRRQRAGLPLYPPE 150 (474)
Q Consensus 100 ~~LieLv~k~G~--------kWs~IAk~LpG--R---T~~QcKnRW~~~Lkkk~r~g~~~~p~e 150 (474)
-+|..+|.+.|. +|.+||..|.- . ....+|..|.++|-.-........+++
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~ 130 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPN 130 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 356777777773 69999999832 1 267899999998887643322333333
No 114
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=43.50 E-value=24 Score=30.37 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC--------ChHHHhccCCCCC----HHHHHHHHHHHhhhH
Q 011938 100 QMIVELHAKMGN--------KWARMAAHLPGRT----DNEIKNYWNTRIKRR 139 (474)
Q Consensus 100 ~~LieLv~k~G~--------kWs~IAk~LpGRT----~~QcKnRW~~~Lkkk 139 (474)
-+|..+|.+.|. +|.+||+.|.--+ ..++|..|.++|-.-
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 356777777773 6999999993322 568899998888754
No 115
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.40 E-value=15 Score=31.64 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc---cccchhhhhhccCC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC---GKSCRLRWANHLRP 87 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt---~kQCR~RW~n~L~p 87 (474)
-+|..+|.+.|. +.|.+|+..++...+ +...|..|.++|-+
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 467888888873 479999999987332 23456666666543
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=43.36 E-value=11 Score=32.56 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc----cccchhhhhhccCC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC----GKSCRLRWANHLRP 87 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt----~kQCR~RW~n~L~p 87 (474)
-+|..+|.+.|. +.|.+||..++...+ +...|..|.++|-|
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 467788888873 479999999987432 34567778777754
No 117
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.54 E-value=24 Score=30.28 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCCC----HHHHHHHHHHHhhhH
Q 011938 101 MIVELHAKMGN--------KWARMAAHLPGRT----DNEIKNYWNTRIKRR 139 (474)
Q Consensus 101 ~LieLv~k~G~--------kWs~IAk~LpGRT----~~QcKnRW~~~Lkkk 139 (474)
+|..+|.+.|. +|.+||+.|.--. ...+|..|.++|-.-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46677777773 6999999993321 468899888877654
No 118
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=42.27 E-value=12 Score=30.50 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhCCccc---cccchhhhhhccCC
Q 011938 48 ILIDYVKKHGE-------GNWNAVQKNSGLFRC---GKSCRLRWANHLRP 87 (474)
Q Consensus 48 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt---~kQCR~RW~n~L~p 87 (474)
+|..+|.+.|. +.|.+|+..++...+ +.+.+..|.++|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 57777777762 489999999987432 33567777777643
No 119
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.24 E-value=13 Score=32.17 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCCCHHHHHHHHHHHhhhHHH
Q 011938 101 MIVELHAKMGN--------KWARMAAHLPGRTDNEIKNYWNTRIKRRQR 141 (474)
Q Consensus 101 ~LieLv~k~G~--------kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~r 141 (474)
+|..+|.+.|. +|.+||+.|.--....+|..|.++|-.-..
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 35566666653 599999998544489999999998876543
No 120
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=39.80 E-value=12 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc---cccchhhhhhccC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC---GKSCRLRWANHLR 86 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt---~kQCR~RW~n~L~ 86 (474)
-+|..+|.+.|. +.|.+||..++...+ +.+.+..|.++|-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 468888888873 479999999987332 3456677776654
No 121
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.23 E-value=1.6e+02 Score=23.96 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCC------CCCCCCCCHHHHHHHHHHHHHhCCC
Q 011938 39 GPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRP------NLKKGAFTQEEEQMIVELHAKMGNK 112 (474)
Q Consensus 39 g~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p------~lkkg~WT~EED~~LieLv~k~G~k 112 (474)
...|.++-..++.++. -|. .-.+||+.++. +...+ .||.+.... .-.....+++++..|+++...-.-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgi--s~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKISR--SRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4678888888887774 454 78999999984 33333 334332111 1122358889888888873322223
Q ss_pred hHHHhccCCC--CCHHHHHHHH
Q 011938 113 WARMAAHLPG--RTDNEIKNYW 132 (474)
Q Consensus 113 Ws~IAk~LpG--RT~~QcKnRW 132 (474)
-.+|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 46788877 4 5666666544
No 122
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=37.66 E-value=23 Score=32.53 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=19.6
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCC
Q 011938 34 VILKKGPWTSAEDAILI--------DYVKKHGE 58 (474)
Q Consensus 34 p~lkKg~WT~EED~~L~--------~lV~kyG~ 58 (474)
|.-..|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 44678999999999886 66777763
No 123
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.47 E-value=23 Score=31.44 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhCCccc----cccchhhhhhccCC
Q 011938 47 AILIDYVKKHGE-------GNWNAVQKNSGLFRC----GKSCRLRWANHLRP 87 (474)
Q Consensus 47 ~~L~~lV~kyG~-------~nW~~IAk~l~~~Rt----~kQCR~RW~n~L~p 87 (474)
-+|..+|.+.|. +.|.+|+..++...+ +.+.+..|.++|-+
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 457777887773 479999999987332 34578888888876
No 124
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.76 E-value=52 Score=24.61 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 94 FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 94 WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
+|+.|- .++.++ ..|....+||+.| |-+...|+.+....+++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344444 444555 5678899999999 88999999888775544
No 125
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=35.44 E-value=54 Score=28.41 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=24.9
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938 109 MGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 109 ~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~ 140 (474)
.|-...+||+.| |-+...|+.+....+++..
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 466799999999 8999999998877665543
No 126
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.32 E-value=35 Score=29.45 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=25.6
Q ss_pred HhCCChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938 108 KMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 108 k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~ 140 (474)
..|-.+.+||+.| |-+...|+++....+++..
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3466799999999 8899999999887666543
No 127
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=33.76 E-value=9.3 Score=33.14 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhCCccccccchhhhhhccCC
Q 011938 48 ILIDYVKKHGE-------GNWNAVQKNSGLFRCGKSCRLRWANHLRP 87 (474)
Q Consensus 48 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p 87 (474)
+|..+|.+.|. +.|.+|+..++... +...|..|.++|-|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 57777777762 36999999998733 66667777766643
No 128
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.75 E-value=18 Score=29.50 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CChHHHhccCCCC----CHHHHHHHHHHHhhh
Q 011938 101 MIVELHAKMG--------NKWARMAAHLPGR----TDNEIKNYWNTRIKR 138 (474)
Q Consensus 101 ~LieLv~k~G--------~kWs~IAk~LpGR----T~~QcKnRW~~~Lkk 138 (474)
+|..+|.+.| ++|.+||+.|.-- ...++|..|.++|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4666777766 3699999988321 256888888777654
No 129
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=32.22 E-value=49 Score=27.58 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 011938 95 TQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKN 130 (474)
Q Consensus 95 T~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKn 130 (474)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677888888999999999999999 777777654
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.79 E-value=65 Score=25.75 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+..+.+++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34467888777666554 788899999999 899999999988866543
No 131
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.57 E-value=64 Score=27.71 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCC--------ChHHHhccCC--CC---CHHHHHHHHHHHhhhHH
Q 011938 100 QMIVELHAKMGN--------KWARMAAHLP--GR---TDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 100 ~~LieLv~k~G~--------kWs~IAk~Lp--GR---T~~QcKnRW~~~Lkkk~ 140 (474)
-+|..+|.+.|. +|.+||+.|. .. ....+|..|.++|-.--
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 457777777773 6999999983 22 26789999999887653
No 132
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=31.48 E-value=39 Score=29.19 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCccCCCCHHHH--HHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 011938 34 VILKKGPWTSAED--AILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVELHAKMGN 111 (474)
Q Consensus 34 p~lkKg~WT~EED--~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~LieLv~k~G~ 111 (474)
++.=+.+|.+.+. +.|.+..++.|. ....|.. +++ |. |+ --+|..+|.+.|.
T Consensus 3 ~~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~-----------lD------------L~~Ly~~V~~~GG 56 (121)
T 2rq5_A 3 LGSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CE-----------LD------------LACFFRLINEMGG 56 (121)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EE-----------CC------------HHHHHHHHHHTTS
T ss_pred HHHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Ee-----------cc------------HHHHHHHHHHcCc
Confidence 3445678987765 456666677676 4433332 221 11 11 2357777888874
Q ss_pred --------ChHHHhccC--CCC---CHHHHHHHHHHHhhhHH
Q 011938 112 --------KWARMAAHL--PGR---TDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 112 --------kWs~IAk~L--pGR---T~~QcKnRW~~~Lkkk~ 140 (474)
+|.+||..| +.- ....+|..|.++|-.--
T Consensus 57 ~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 57 MQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 699999998 221 25688999988887654
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.04 E-value=60 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 93 AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 93 ~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
..|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655554 5 6788899999999 889999999887765544
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.98 E-value=55 Score=25.43 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 93 AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 93 ~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
.+|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655544 4 5688899999999 89999999888765544
No 135
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.13 E-value=41 Score=29.45 Aligned_cols=43 Identities=9% Similarity=0.045 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhHH
Q 011938 97 EEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRRQ 140 (474)
Q Consensus 97 EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk~ 140 (474)
+-|.+|+++.++.|. .|.+||+.+ |-+...|+.|++.+.+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 567888888887765 599999999 9999999999988776653
No 136
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.80 E-value=61 Score=25.30 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=29.9
Q ss_pred HHHHHHHHHHH----hCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 98 EEQMIVELHAK----MGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 98 ED~~LieLv~k----~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.++.++.+.-- .|-.+.+||..| |-+...|+.+-...+++.
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44555555544 467899999999 999999998776655443
No 137
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.62 E-value=63 Score=23.68 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 92 GAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 92 g~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
..+|+.|-+.|.. + ..|....+||+.| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577777766655 4 5677899999999 88999999888775544
No 138
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.34 E-value=27 Score=29.04 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHHHHHHhC--------CChHHHhccCCC-----CCHHHHHHHHHHHhhh
Q 011938 100 QMIVELHAKMG--------NKWARMAAHLPG-----RTDNEIKNYWNTRIKR 138 (474)
Q Consensus 100 ~~LieLv~k~G--------~kWs~IAk~LpG-----RT~~QcKnRW~~~Lkk 138 (474)
-+|..+|.+.| ++|.+||+.|.- -...++|..|.++|-.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34667777776 369999998832 1246789988887754
No 139
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.99 E-value=26 Score=30.75 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCChhHHhhhhCCccccccchhhhhhccCCC
Q 011938 44 AEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPN 88 (474)
Q Consensus 44 EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCR~RW~n~L~p~ 88 (474)
+-|.+|++++++.+.-.|.+||+.+| -+...|+.|+.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999988889999999998 57778888887765444
No 140
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.57 E-value=51 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 011938 90 KKGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKN 130 (474)
Q Consensus 90 kkg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKn 130 (474)
-...=|++ .|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 18 LNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp TTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33344444 46666788999999999999 777776654
No 141
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.40 E-value=70 Score=26.53 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=23.8
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 109 MGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 109 ~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.|-...+||+.| |-+...|+.+....+++.
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 466799999999 889999998887765543
No 142
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.39 E-value=96 Score=25.75 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 98 EEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 98 ED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.+..++.++...|-...+||..| |.+...|+.+....+++.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45556666667788999999999 899999998887655544
No 143
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.38 E-value=82 Score=27.98 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 100 QMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 100 ~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
..++.++-..|-...+||+.| |-+...|+.+....+++.
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 333444444467899999999 899999998887655544
No 144
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=26.66 E-value=53 Score=27.95 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 011938 101 MIVELHAKMGNKWARMAAHLPGRTDNEIKN 130 (474)
Q Consensus 101 ~LieLv~k~G~kWs~IAk~LpGRT~~QcKn 130 (474)
.|..+....|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 767766644
No 145
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.34 E-value=81 Score=22.36 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 99 EQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 99 D~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
+..++.++ ..|..-.+||+.| |-+...|+.+....+++.
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 44556663 5688899999999 889999999887765543
No 146
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.29 E-value=52 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 011938 99 EQMIVELHAKMGNKWARMAAHLPGRTDNEIKN 130 (474)
Q Consensus 99 D~~LieLv~k~G~kWs~IAk~LpGRT~~QcKn 130 (474)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778889999999999999 777766644
No 147
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.77 E-value=78 Score=26.33 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 011938 99 EQMIVELHAKMGNKWARMAAHLPGRTDNEIKN 130 (474)
Q Consensus 99 D~~LieLv~k~G~kWs~IAk~LpGRT~~QcKn 130 (474)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455667778899999999999 777777765
No 148
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.43 E-value=48 Score=29.40 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=27.1
Q ss_pred hHHhhhhCCccccccchhhhhhccCCCCCCCCCCHHHHHHHHH
Q 011938 62 NAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFTQEEEQMIVE 104 (474)
Q Consensus 62 ~~IAk~l~~~Rt~kQCR~RW~n~L~p~lkkg~WT~EED~~Lie 104 (474)
+.||..+.+ ++..+||..+. + ...||+||++.+.+
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 578888876 99999998763 2 23599999988764
No 149
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.07 E-value=1.4e+02 Score=19.36 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHH
Q 011938 93 AFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYW 132 (474)
Q Consensus 93 ~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW 132 (474)
..++++-..++.++ .-|....+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677776777766 3477899999998 78888776543
No 150
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.27 E-value=71 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 94 FTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 94 WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
.|+.|-+.| .++ ..|..-.+||+.| |-+...|+.+....+++.
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455555554 444 5688899999999 889999999887765543
No 151
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.23 E-value=89 Score=25.00 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCChhHHhhhhCCccc
Q 011938 9 DDMMLSNDQTDSPLMDEGGGGTARGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRC 73 (474)
Q Consensus 9 ~~~m~~~~~~~s~~~~~~~~~~~~~p~lkKg~WT~EED~~L~~lV~kyG~~nW~~IAk~l~~~Rt 73 (474)
++.|++....+.+ +.........-|.+.|.+++++++. |..+.|+.+|..|.
T Consensus 18 ~~~~~~~~~~~~~------------~~~~~~~l~~~Er~~I~~aL~~~~G-N~s~AA~~LGISR~ 69 (81)
T 1umq_A 18 GSHMLAKGESLPP------------PPENPMSADRVRWEHIQRIYEMCDR-NVSETARRLNMHRR 69 (81)
T ss_dssp ----CCCTTSSCC------------CSCSSSCHHHHHHHHHHHHHHHTTS-CHHHHHHHHTSCHH
T ss_pred chhhcCCCCCCCC------------CCchhhhHHHHHHHHHHHHHHHhCC-CHHHHHHHhCCCHH
No 152
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.17 E-value=1.1e+02 Score=24.39 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHH
Q 011938 97 EEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNY 131 (474)
Q Consensus 97 EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnR 131 (474)
-|.+.|.+++.+++.+..+.|+.| |=+...++.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477888899999999999999998 7676666544
No 153
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.69 E-value=1.2e+02 Score=25.62 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 97 EEEQMIVELHAKMGN-KWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 97 EED~~LieLv~k~G~-kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
+-|.+|+.+..+.|. .|.+||+.+ |-+...|+.|++.+.+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 446677777777664 699999999 889999999988876554
No 154
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.74 E-value=93 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC-hHHHhccCCCCCHHHHHHHHHHHhhh
Q 011938 97 EEEQMIVELHAKMGNK-WARMAAHLPGRTDNEIKNYWNTRIKR 138 (474)
Q Consensus 97 EED~~LieLv~k~G~k-Ws~IAk~LpGRT~~QcKnRW~~~Lkk 138 (474)
+-|.+|+++..+.|.- |.+||+.+ |-+...|+.|++.+.+.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
No 155
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.71 E-value=1.8e+02 Score=23.66 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHHhhhH
Q 011938 91 KGAFTQEEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRR 139 (474)
Q Consensus 91 kg~WT~EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKnRW~~~Lkkk 139 (474)
....|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45678888877654 3 3688899999999 889999999887765543
No 156
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.61 E-value=1e+02 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 011938 97 EEEQMIVELHAKMGNKWARMAAHLPGRTDNEIKN 130 (474)
Q Consensus 97 EED~~LieLv~k~G~kWs~IAk~LpGRT~~QcKn 130 (474)
-|.+.|.++..+++.++.+.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888899999999999999988 555554443
Done!