BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011939
         (474 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana
           GN=At5g41620 PE=1 SV=2
          Length = 623

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 59/386 (15%)

Query: 104 VSARKLAATLWEMNEM---------------PSPKL-RETSGGGGYDERRIRREARARER 147
           VS+RKLAA  WE ++                 S K+ R  +G  G   RR        +R
Sbjct: 46  VSSRKLAAAFWEFHQYHYKDEEDCSYSYLSSASAKMHRGPNGFAGASSRR--------QR 97

Query: 148 ERERVTRSLHSGSLPPHLSDPS--HSPVSERMDRSGTG----SHHRRSSSISQRLRLTES 201
             + V    +   L   L DPS  H P S    R   G     HH+   SI +       
Sbjct: 98  HGKAVAVKENGLDLSQFLRDPSPDHQPDSAGSLRRQIGQMLIKHHQ---SIDR------- 147

Query: 202 NGGVLDSVSNASL---MEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMW 258
           N   L  VS AS    +EV T ++A TPS S        ++    L TS ELLK++NR+W
Sbjct: 148 NNHALQPVSPASYGSSLEVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIW 207

Query: 259 GQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER 318
             E++  S++SL+ AL  E+  +R+++ +L++ Q++D+ E+  ++K  AEEK   KNKE 
Sbjct: 208 SLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEV 267

Query: 319 EVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIE 378
           E + +A++S+   LE ERKLR+R ESL++K+ +EL+E K SL   VK+L+   ++  ++E
Sbjct: 268 ERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMME 327

Query: 379 QVCDELARDINDDKSEVEELKRESAIALEEVEK--------EREMIQVADVLREERAQIK 430
            +CDE A+ I   + E+  LK+++      ++K        ++ ++ +A+   +ER Q++
Sbjct: 328 LLCDEFAKGIKSYEEEIHGLKKKN------LDKDWAGRGGGDQLVLHIAESWLDERMQMR 381

Query: 431 LSEAKYQLEEKNAAV-DKLRSQLEAF 455
           L E    L  KN +V DKL  ++E F
Sbjct: 382 L-EGGDTLNGKNRSVLDKLEVEIETF 406


>sp|P12755|SKI_HUMAN Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1
          Length = 728

 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 31/161 (19%)

Query: 284 QVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE 343
           +++  +Q +RS   E+ +L       + A K K RE  EA           +R LR+  E
Sbjct: 576 KLSAALQAKRSLHQELEFL-------RVAKKEKLREATEA-----------KRNLRKEIE 617

Query: 344 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD---ELARDINDDKSEVEELKR 400
            L  +  K++ E   S L+  ++L+  ++AR     VCD   E  R      +++E+L+ 
Sbjct: 618 RLRAENEKKMKEANESRLRLKRELEQARQAR-----VCDKGCEAGRLRAKYSAQIEDLQ- 671

Query: 401 ESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEK 441
              + L+  E +RE ++ AD+LRE  A+  L +   +L+E+
Sbjct: 672 ---VKLQHAEADREQLR-ADLLREREAREHLEKVVKELQEQ 708


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.125    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,443,533
Number of Sequences: 539616
Number of extensions: 6359827
Number of successful extensions: 38805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 1972
Number of HSP's that attempted gapping in prelim test: 33320
Number of HSP's gapped (non-prelim): 5596
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)