Query 011939
Match_columns 474
No_of_seqs 89 out of 109
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 97.5 0.028 6E-07 62.9 23.8 74 260-345 451-524 (697)
2 KOG0971 Microtubule-associated 97.1 0.14 3E-06 59.1 23.3 208 231-454 227-476 (1243)
3 PF07888 CALCOCO1: Calcium bin 97.0 0.35 7.5E-06 53.2 25.2 116 342-458 302-439 (546)
4 TIGR00606 rad50 rad50. This fa 96.5 0.27 5.8E-06 58.1 21.4 131 322-460 835-968 (1311)
5 PF00038 Filament: Intermediat 96.4 0.39 8.5E-06 47.2 18.5 117 255-371 32-151 (312)
6 KOG0977 Nuclear envelope prote 96.4 0.44 9.5E-06 52.5 20.4 136 271-406 115-269 (546)
7 PF00038 Filament: Intermediat 96.4 1.2 2.6E-05 43.9 22.1 76 269-349 75-151 (312)
8 TIGR02169 SMC_prok_A chromosom 96.3 1.7 3.7E-05 49.1 25.2 12 236-247 171-182 (1164)
9 TIGR02169 SMC_prok_A chromosom 96.3 2.1 4.5E-05 48.4 25.8 10 102-111 115-124 (1164)
10 PF09726 Macoilin: Transmembra 96.3 0.74 1.6E-05 51.9 22.1 71 270-345 426-510 (697)
11 KOG0996 Structural maintenance 96.0 1.6 3.5E-05 51.9 23.5 178 281-458 332-515 (1293)
12 KOG0161 Myosin class II heavy 96.0 1.4 3E-05 54.8 23.9 89 272-360 967-1057(1930)
13 KOG0612 Rho-associated, coiled 95.7 3.6 7.8E-05 49.3 24.7 117 273-389 465-581 (1317)
14 KOG0933 Structural maintenance 95.7 1.7 3.8E-05 51.0 21.5 203 237-449 710-919 (1174)
15 COG1196 Smc Chromosome segrega 95.1 7 0.00015 46.1 24.7 36 418-453 462-498 (1163)
16 PRK02224 chromosome segregatio 95.1 5.2 0.00011 44.9 22.7 32 440-471 426-459 (880)
17 PHA02562 46 endonuclease subun 94.8 5 0.00011 42.4 20.7 48 353-400 257-306 (562)
18 COG1196 Smc Chromosome segrega 94.6 11 0.00024 44.5 24.7 59 249-307 668-726 (1163)
19 KOG0977 Nuclear envelope prote 94.5 8 0.00017 43.0 21.8 129 275-403 91-232 (546)
20 PF07888 CALCOCO1: Calcium bin 94.4 10 0.00022 42.2 24.6 46 245-293 150-195 (546)
21 KOG0161 Myosin class II heavy 94.2 16 0.00034 46.1 25.2 113 270-389 1246-1360(1930)
22 PRK02224 chromosome segregatio 94.0 13 0.00029 41.8 25.1 32 269-300 468-499 (880)
23 KOG0933 Structural maintenance 93.9 17 0.00037 43.3 23.4 189 271-460 686-902 (1174)
24 PRK11637 AmiB activator; Provi 93.1 7.9 0.00017 40.5 18.0 25 381-405 221-245 (428)
25 KOG0963 Transcription factor/C 92.7 2.4 5.2E-05 47.5 14.0 139 245-417 214-357 (629)
26 PRK03918 chromosome segregatio 92.0 25 0.00053 39.5 24.8 19 244-262 141-159 (880)
27 PRK09039 hypothetical protein; 91.9 17 0.00037 37.6 20.3 154 271-456 48-203 (343)
28 PF05701 WEMBL: Weak chloropla 91.4 25 0.00054 38.4 21.8 70 382-459 375-444 (522)
29 KOG0964 Structural maintenance 91.3 26 0.00057 41.8 20.5 182 252-453 234-442 (1200)
30 KOG0976 Rho/Rac1-interacting s 91.1 38 0.00083 39.9 22.1 80 339-418 272-365 (1265)
31 KOG0163 Myosin class VI heavy 91.0 14 0.00029 43.2 17.6 100 237-339 839-940 (1259)
32 PF06705 SF-assemblin: SF-asse 90.9 17 0.00036 35.5 19.4 69 315-385 91-160 (247)
33 PF12128 DUF3584: Protein of u 90.9 42 0.00091 40.1 24.4 56 267-322 633-688 (1201)
34 PF05615 THOC7: Tho complex su 90.9 6.1 0.00013 35.3 12.3 55 248-302 19-79 (139)
35 PF09727 CortBP2: Cortactin-bi 90.4 3.5 7.6E-05 40.2 11.1 151 247-412 12-174 (192)
36 KOG0976 Rho/Rac1-interacting s 89.8 49 0.0011 39.1 21.1 120 282-402 251-384 (1265)
37 KOG0996 Structural maintenance 88.9 36 0.00079 41.2 19.4 62 349-410 505-566 (1293)
38 PF12718 Tropomyosin_1: Tropom 88.4 20 0.00044 33.0 18.0 93 271-368 2-104 (143)
39 PF09731 Mitofilin: Mitochondr 88.1 43 0.00093 36.3 22.2 48 245-292 223-274 (582)
40 PF07798 DUF1640: Protein of u 87.9 24 0.00051 33.1 17.7 66 337-404 84-156 (177)
41 KOG0612 Rho-associated, coiled 87.7 71 0.0015 39.1 20.8 40 315-354 542-581 (1317)
42 TIGR00606 rad50 rad50. This fa 87.4 75 0.0016 38.3 25.0 62 271-333 890-951 (1311)
43 KOG0250 DNA repair protein RAD 87.2 23 0.00049 42.3 16.5 149 271-430 311-460 (1074)
44 PF04111 APG6: Autophagy prote 87.0 5.5 0.00012 40.8 10.4 49 360-408 52-100 (314)
45 KOG1103 Predicted coiled-coil 87.0 19 0.0004 38.9 14.4 163 268-458 106-291 (561)
46 PF10174 Cast: RIM-binding pro 86.5 71 0.0015 37.2 20.5 64 340-403 241-311 (775)
47 KOG1029 Endocytic adaptor prot 86.2 75 0.0016 37.5 19.3 66 338-403 442-510 (1118)
48 PHA02562 46 endonuclease subun 85.9 51 0.0011 35.0 25.2 80 349-428 335-418 (562)
49 KOG0239 Kinesin (KAR3 subfamil 85.8 47 0.001 37.9 17.6 139 316-460 175-317 (670)
50 KOG4593 Mitotic checkpoint pro 85.7 59 0.0013 37.5 18.1 218 237-468 348-585 (716)
51 PF07798 DUF1640: Protein of u 84.8 34 0.00073 32.1 13.6 86 269-365 58-152 (177)
52 PF10174 Cast: RIM-binding pro 84.2 91 0.002 36.3 21.0 41 381-421 543-583 (775)
53 PF10186 Atg14: UV radiation r 83.6 44 0.00094 32.2 15.2 71 380-451 71-141 (302)
54 PF10186 Atg14: UV radiation r 83.3 45 0.00097 32.1 18.2 18 319-336 73-90 (302)
55 TIGR01843 type_I_hlyD type I s 82.7 57 0.0012 32.8 20.7 25 430-454 247-271 (423)
56 PF15035 Rootletin: Ciliary ro 82.6 47 0.001 31.9 17.7 92 268-371 15-122 (182)
57 PF09728 Taxilin: Myosin-like 82.2 63 0.0014 33.3 15.5 67 364-444 63-129 (309)
58 KOG0971 Microtubule-associated 82.1 1.2E+02 0.0027 36.4 25.4 90 311-411 268-357 (1243)
59 PF12128 DUF3584: Protein of u 81.7 1.3E+02 0.0028 36.3 25.7 65 271-335 630-697 (1201)
60 PF01576 Myosin_tail_1: Myosin 81.2 0.37 8E-06 55.1 -0.9 143 249-398 673-818 (859)
61 KOG4674 Uncharacterized conser 81.2 1.4E+02 0.0031 38.0 20.1 129 303-454 1280-1426(1822)
62 PF09730 BicD: Microtubule-ass 81.2 92 0.002 36.1 17.6 160 231-419 534-701 (717)
63 COG2433 Uncharacterized conser 81.0 61 0.0013 37.0 15.7 43 233-276 311-353 (652)
64 PF11559 ADIP: Afadin- and alp 80.6 32 0.0007 31.0 11.4 48 246-293 29-76 (151)
65 PF00901 Orbi_VP5: Orbivirus o 80.3 25 0.00055 38.9 12.4 17 279-295 87-103 (508)
66 KOG0982 Centrosomal protein Nu 79.5 45 0.00097 36.7 13.7 98 323-422 321-444 (502)
67 PF00261 Tropomyosin: Tropomyo 79.5 64 0.0014 31.5 19.3 140 265-411 88-229 (237)
68 cd07652 F-BAR_Rgd1 The F-BAR ( 79.2 31 0.00067 33.8 11.7 51 321-384 91-141 (234)
69 KOG0994 Extracellular matrix g 79.2 1.7E+02 0.0037 36.2 21.6 27 377-403 1610-1636(1758)
70 PRK04863 mukB cell division pr 79.0 1.7E+02 0.0038 36.5 20.0 9 159-167 182-190 (1486)
71 PF10168 Nup88: Nuclear pore c 78.4 1E+02 0.0022 35.4 16.9 30 335-368 634-663 (717)
72 KOG4787 Uncharacterized conser 78.1 41 0.00088 38.5 13.2 128 271-430 334-461 (852)
73 KOG0994 Extracellular matrix g 77.6 1.9E+02 0.0042 35.9 23.4 96 357-460 1653-1748(1758)
74 PRK04778 septation ring format 77.0 1.2E+02 0.0027 33.3 21.6 53 318-370 284-336 (569)
75 TIGR03185 DNA_S_dndD DNA sulfu 76.8 1.3E+02 0.0028 33.5 22.4 17 40-58 31-47 (650)
76 PF13851 GAS: Growth-arrest sp 76.8 75 0.0016 30.8 18.1 59 346-404 57-118 (201)
77 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.7 56 0.0012 29.3 16.4 72 271-342 5-78 (132)
78 PF05103 DivIVA: DivIVA protei 76.2 1.9 4.2E-05 37.2 2.2 103 296-408 20-122 (131)
79 PF06428 Sec2p: GDP/GTP exchan 76.1 8.3 0.00018 34.0 6.1 68 330-397 1-69 (100)
80 PF04156 IncA: IncA protein; 76.1 66 0.0014 29.7 14.5 16 276-291 81-96 (191)
81 PF06705 SF-assemblin: SF-asse 75.9 83 0.0018 30.8 21.1 60 298-357 13-76 (247)
82 KOG0250 DNA repair protein RAD 75.5 2E+02 0.0043 35.0 22.5 30 350-379 350-379 (1074)
83 PF05667 DUF812: Protein of un 75.3 1.5E+02 0.0033 33.5 18.6 25 94-121 86-110 (594)
84 PRK04778 septation ring format 75.3 1.4E+02 0.003 33.0 19.9 82 266-359 253-339 (569)
85 PF01576 Myosin_tail_1: Myosin 75.2 0.93 2E-05 52.0 0.0 93 271-363 358-452 (859)
86 PF14197 Cep57_CLD_2: Centroso 74.8 29 0.00063 28.7 8.6 61 269-334 5-65 (69)
87 PF05701 WEMBL: Weak chloropla 74.4 1.4E+02 0.003 32.7 24.4 11 105-115 66-76 (522)
88 KOG0579 Ste20-like serine/thre 74.2 1.9E+02 0.0041 34.2 19.0 77 370-458 1093-1171(1187)
89 PRK00409 recombination and DNA 74.0 57 0.0012 37.6 13.5 93 239-333 486-587 (782)
90 KOG1029 Endocytic adaptor prot 73.9 72 0.0016 37.7 14.0 111 233-349 456-572 (1118)
91 PF14931 IFT20: Intraflagellar 73.8 38 0.00081 30.8 9.8 80 374-457 22-108 (120)
92 PF08317 Spc7: Spc7 kinetochor 73.5 1.1E+02 0.0025 31.2 16.6 50 321-373 182-231 (325)
93 KOG0995 Centromere-associated 73.5 1.7E+02 0.0037 33.3 16.6 58 353-410 519-577 (581)
94 PF04849 HAP1_N: HAP1 N-termin 73.3 1.3E+02 0.0027 31.7 16.0 192 259-460 87-303 (306)
95 KOG4466 Component of histone d 72.9 1E+02 0.0022 32.2 13.7 21 291-311 17-37 (291)
96 PRK11637 AmiB activator; Provi 72.7 1.3E+02 0.0028 31.6 24.4 21 273-293 44-64 (428)
97 PRK03918 chromosome segregatio 72.7 1.7E+02 0.0037 33.0 25.1 8 40-47 26-33 (880)
98 TIGR01069 mutS2 MutS2 family p 72.3 53 0.0011 37.8 12.8 95 240-334 482-583 (771)
99 TIGR02231 conserved hypothetic 72.1 46 0.001 35.8 11.7 84 270-355 72-163 (525)
100 PRK04863 mukB cell division pr 71.6 2.7E+02 0.0059 34.9 22.3 12 246-257 277-288 (1486)
101 PF04108 APG17: Autophagy prot 69.9 1.6E+02 0.0034 31.4 16.0 33 358-390 346-378 (412)
102 PRK14154 heat shock protein Gr 69.6 94 0.002 30.8 12.2 70 264-333 47-116 (208)
103 PF05010 TACC: Transforming ac 69.4 1.2E+02 0.0026 29.9 21.8 26 348-373 80-105 (207)
104 KOG0993 Rab5 GTPase effector R 69.1 1.2E+02 0.0026 33.6 13.7 129 271-405 40-174 (542)
105 KOG0964 Structural maintenance 68.8 2.8E+02 0.006 33.8 20.7 105 348-454 297-422 (1200)
106 PRK10884 SH3 domain-containing 68.7 84 0.0018 30.8 11.6 26 266-291 90-115 (206)
107 PF14197 Cep57_CLD_2: Centroso 68.4 40 0.00087 27.9 8.0 16 386-401 47-62 (69)
108 KOG3915 Transcription regulato 68.3 40 0.00086 37.6 10.1 57 273-348 511-567 (641)
109 COG1340 Uncharacterized archae 68.1 1.6E+02 0.0035 30.8 21.6 47 365-411 165-211 (294)
110 PTZ00266 NIMA-related protein 68.0 53 0.0011 39.3 11.9 15 103-117 268-282 (1021)
111 PF09727 CortBP2: Cortactin-bi 67.9 83 0.0018 31.0 11.3 73 285-372 115-190 (192)
112 KOG1899 LAR transmembrane tyro 67.3 2E+02 0.0043 33.5 15.4 95 262-364 92-194 (861)
113 COG0419 SbcC ATPase involved i 67.2 2.5E+02 0.0054 32.7 24.0 11 248-258 504-514 (908)
114 PF14942 Muted: Organelle biog 67.2 1.1E+02 0.0024 28.6 15.2 54 296-349 20-75 (145)
115 PF09731 Mitofilin: Mitochondr 67.1 2E+02 0.0042 31.4 20.7 19 275-293 250-268 (582)
116 cd07675 F-BAR_FNBP1L The F-BAR 66.8 1.5E+02 0.0033 30.0 14.1 13 411-423 215-227 (252)
117 COG4942 Membrane-bound metallo 66.6 2E+02 0.0044 31.5 22.5 31 371-401 146-176 (420)
118 PF12325 TMF_TATA_bd: TATA ele 66.6 1E+02 0.0022 28.0 13.6 40 269-308 23-62 (120)
119 PF11559 ADIP: Afadin- and alp 66.0 1E+02 0.0022 27.8 14.5 76 266-349 35-110 (151)
120 PF05837 CENP-H: Centromere pr 66.0 93 0.002 27.3 11.0 41 316-356 3-43 (106)
121 KOG4677 Golgi integral membran 64.7 2.4E+02 0.0052 31.6 19.0 56 215-286 168-223 (554)
122 COG3524 KpsE Capsule polysacch 64.2 11 0.00023 39.9 4.9 55 234-292 192-246 (372)
123 PF15254 CCDC14: Coiled-coil d 64.2 2.2E+02 0.0048 33.7 15.3 98 318-425 382-495 (861)
124 COG2433 Uncharacterized conser 63.6 94 0.002 35.6 12.1 54 316-369 450-506 (652)
125 PF14915 CCDC144C: CCDC144C pr 63.6 1.8E+02 0.004 30.6 13.4 107 269-392 179-291 (305)
126 KOG0288 WD40 repeat protein Ti 63.5 2.1E+02 0.0046 31.6 14.3 34 409-442 107-140 (459)
127 TIGR01000 bacteriocin_acc bact 62.9 2.1E+02 0.0046 30.3 20.6 26 269-294 97-122 (457)
128 PRK00409 recombination and DNA 62.6 2.6E+02 0.0056 32.5 15.7 19 296-314 515-533 (782)
129 PF15619 Lebercilin: Ciliary p 62.3 1.6E+02 0.0034 28.7 14.7 119 271-410 14-149 (194)
130 KOG1853 LIS1-interacting prote 62.0 2.1E+02 0.0046 30.0 16.0 47 264-310 40-86 (333)
131 smart00498 FH2 Formin Homology 61.6 1.8E+02 0.0039 30.9 13.4 116 269-384 310-431 (432)
132 PLN03188 kinesin-12 family pro 61.0 4.2E+02 0.009 33.1 18.3 37 261-297 1057-1093(1320)
133 PF08317 Spc7: Spc7 kinetochor 60.3 2.1E+02 0.0045 29.4 17.2 54 310-364 139-193 (325)
134 PF05700 BCAS2: Breast carcino 60.0 1.7E+02 0.0038 28.4 17.0 111 271-392 99-209 (221)
135 PRK14140 heat shock protein Gr 59.9 1.8E+02 0.0039 28.5 12.5 68 265-332 33-100 (191)
136 KOG4572 Predicted DNA-binding 59.9 3.9E+02 0.0084 32.4 18.3 49 413-465 1066-1114(1424)
137 cd07653 F-BAR_CIP4-like The F- 59.4 1.7E+02 0.0037 28.1 17.4 81 326-406 94-174 (251)
138 PF08614 ATG16: Autophagy prot 58.9 1.7E+02 0.0036 27.8 11.9 92 262-358 95-186 (194)
139 PRK14139 heat shock protein Gr 58.2 71 0.0015 31.0 8.9 62 270-331 33-94 (185)
140 COG4717 Uncharacterized conser 58.1 4.1E+02 0.0088 32.1 24.1 93 243-337 155-247 (984)
141 PF03245 Phage_lysis: Bacterio 57.9 71 0.0015 28.8 8.4 68 315-383 6-73 (125)
142 TIGR01069 mutS2 MutS2 family p 57.9 3.2E+02 0.0068 31.8 15.3 17 296-312 510-526 (771)
143 PRK14158 heat shock protein Gr 57.8 98 0.0021 30.3 9.8 69 264-332 35-103 (194)
144 PF04156 IncA: IncA protein; 57.7 1.6E+02 0.0034 27.2 14.5 20 387-406 159-178 (191)
145 PF06785 UPF0242: Uncharacteri 57.4 2.8E+02 0.0061 30.0 14.2 76 328-403 90-172 (401)
146 PRK09174 F0F1 ATP synthase sub 57.4 1.9E+02 0.0042 28.1 13.3 75 328-402 89-165 (204)
147 TIGR00634 recN DNA repair prot 57.2 3E+02 0.0065 30.2 18.1 154 242-403 138-311 (563)
148 KOG1962 B-cell receptor-associ 57.2 1.3E+02 0.0027 30.3 10.6 62 349-410 149-210 (216)
149 PF13863 DUF4200: Domain of un 56.7 1.3E+02 0.0028 26.0 13.9 50 348-404 50-99 (126)
150 PRK14145 heat shock protein Gr 55.9 84 0.0018 30.9 9.1 64 269-332 45-108 (196)
151 TIGR02977 phageshock_pspA phag 55.5 2E+02 0.0044 27.8 19.1 103 271-401 33-135 (219)
152 PF14915 CCDC144C: CCDC144C pr 54.8 2.8E+02 0.0062 29.3 21.2 161 271-438 8-195 (305)
153 TIGR03185 DNA_S_dndD DNA sulfu 54.8 3.5E+02 0.0075 30.3 19.5 26 281-306 389-414 (650)
154 KOG4403 Cell surface glycoprot 54.5 81 0.0018 35.0 9.5 25 346-370 304-328 (575)
155 PRK14143 heat shock protein Gr 54.5 2.4E+02 0.0052 28.5 12.2 63 270-332 68-130 (238)
156 cd07651 F-BAR_PombeCdc15_like 54.1 2.1E+02 0.0046 27.6 20.5 81 320-410 57-138 (236)
157 KOG4661 Hsp27-ERE-TATA-binding 54.0 1E+02 0.0022 35.5 10.3 14 365-378 663-676 (940)
158 PF04111 APG6: Autophagy prote 53.5 2.5E+02 0.0054 29.0 12.5 58 233-297 14-71 (314)
159 PRK14156 heat shock protein Gr 53.5 68 0.0015 31.0 7.9 40 273-312 31-70 (177)
160 PRK14146 heat shock protein Gr 53.2 91 0.002 30.9 8.9 63 271-333 56-118 (215)
161 PRK14151 heat shock protein Gr 53.0 2.2E+02 0.0047 27.4 11.7 65 268-332 19-83 (176)
162 KOG0249 LAR-interacting protei 53.0 4.6E+02 0.01 31.1 16.0 69 360-434 218-286 (916)
163 PRK10929 putative mechanosensi 52.5 5.2E+02 0.011 31.7 21.5 64 266-334 170-233 (1109)
164 PF10473 CENP-F_leu_zip: Leuci 51.5 2.1E+02 0.0046 26.8 17.2 35 271-305 12-46 (140)
165 PF06785 UPF0242: Uncharacteri 51.1 1.6E+02 0.0034 31.9 10.7 66 273-357 110-175 (401)
166 KOG4674 Uncharacterized conser 51.0 6.7E+02 0.015 32.5 22.7 32 269-300 1278-1310(1822)
167 PF05667 DUF812: Protein of un 50.7 4.2E+02 0.0092 30.1 17.4 16 103-118 205-220 (594)
168 PRK01156 chromosome segregatio 50.6 4.4E+02 0.0096 30.3 24.0 15 246-260 147-161 (895)
169 PF09763 Sec3_C: Exocyst compl 50.5 1.9E+02 0.0041 32.5 11.9 37 342-380 3-39 (701)
170 PRK14147 heat shock protein Gr 50.1 1E+02 0.0022 29.4 8.5 47 269-315 18-64 (172)
171 PF05615 THOC7: Tho complex su 50.0 1.9E+02 0.0041 25.8 11.1 57 344-400 46-102 (139)
172 PF10473 CENP-F_leu_zip: Leuci 49.7 2.3E+02 0.0049 26.6 14.2 89 270-370 25-116 (140)
173 PF08549 SWI-SNF_Ssr4: Fungal 48.2 23 0.0005 40.4 4.5 86 375-460 360-465 (669)
174 PF05911 DUF869: Plant protein 48.0 5.3E+02 0.011 30.4 18.6 77 270-355 25-107 (769)
175 KOG4807 F-actin binding protei 47.8 1.6E+02 0.0034 32.6 10.2 90 257-366 373-464 (593)
176 PF08647 BRE1: BRE1 E3 ubiquit 47.6 1.8E+02 0.004 25.0 12.1 84 282-370 12-95 (96)
177 KOG3433 Protein involved in me 47.4 2.1E+02 0.0046 28.5 10.3 139 278-423 7-168 (203)
178 PF07200 Mod_r: Modifier of ru 47.2 2.1E+02 0.0046 25.6 15.2 128 246-401 5-132 (150)
179 PF01025 GrpE: GrpE; InterPro 47.0 69 0.0015 29.0 6.6 47 271-317 13-59 (165)
180 PTZ00266 NIMA-related protein 46.8 2.7E+02 0.0059 33.6 12.9 10 109-118 229-238 (1021)
181 PF02970 TBCA: Tubulin binding 46.6 1.3E+02 0.0028 25.8 7.8 75 378-461 6-80 (90)
182 KOG0163 Myosin class VI heavy 46.2 6.1E+02 0.013 30.6 15.3 25 365-389 1001-1025(1259)
183 COG4942 Membrane-bound metallo 46.0 4.5E+02 0.0097 29.0 18.7 103 269-372 66-178 (420)
184 KOG0804 Cytoplasmic Zn-finger 46.0 4.8E+02 0.01 29.3 14.4 64 276-353 347-412 (493)
185 PF14712 Snapin_Pallidin: Snap 45.5 1.7E+02 0.0038 24.1 10.2 77 268-351 6-82 (92)
186 TIGR03752 conj_TIGR03752 integ 45.0 2.5E+02 0.0054 31.3 11.4 66 261-337 54-119 (472)
187 PF09787 Golgin_A5: Golgin sub 45.0 4.5E+02 0.0098 28.8 15.1 35 300-334 158-192 (511)
188 PF05837 CENP-H: Centromere pr 44.3 2.2E+02 0.0048 25.0 9.3 29 361-389 61-89 (106)
189 PRK14162 heat shock protein Gr 44.1 3.2E+02 0.007 26.8 12.1 63 269-331 39-101 (194)
190 PF13935 Ead_Ea22: Ead/Ea22-li 43.9 2E+02 0.0044 26.2 9.1 17 374-390 121-137 (139)
191 cd07657 F-BAR_Fes_Fer The F-BA 43.8 3.4E+02 0.0073 27.0 13.9 40 334-373 102-141 (237)
192 PF07083 DUF1351: Protein of u 43.4 2.5E+02 0.0055 27.4 10.2 57 318-374 44-108 (215)
193 PF13935 Ead_Ea22: Ead/Ea22-li 43.3 2.6E+02 0.0056 25.5 10.1 25 267-291 65-89 (139)
194 PRK14148 heat shock protein Gr 42.9 1.7E+02 0.0038 28.6 9.0 44 269-312 40-83 (195)
195 COG1842 PspA Phage shock prote 42.9 3.6E+02 0.0077 27.0 17.6 144 270-455 32-178 (225)
196 PF14523 Syntaxin_2: Syntaxin- 42.8 2E+02 0.0042 23.9 9.0 34 337-370 64-97 (102)
197 KOG0980 Actin-binding protein 42.5 7E+02 0.015 30.2 21.4 35 269-303 365-399 (980)
198 PRK14153 heat shock protein Gr 42.5 3.2E+02 0.0069 26.9 10.7 45 271-315 35-79 (194)
199 PF13851 GAS: Growth-arrest sp 42.2 3.3E+02 0.0072 26.4 22.1 185 245-460 9-195 (201)
200 PF06428 Sec2p: GDP/GTP exchan 41.9 1.3E+02 0.0029 26.6 7.3 63 277-357 2-64 (100)
201 PRK14155 heat shock protein Gr 41.8 1.5E+02 0.0032 29.4 8.4 41 272-312 16-56 (208)
202 PF05911 DUF869: Plant protein 41.4 6.6E+02 0.014 29.6 17.9 42 267-308 587-628 (769)
203 cd07674 F-BAR_FCHO1 The F-BAR 41.1 3.7E+02 0.0081 26.7 19.0 12 449-460 237-248 (261)
204 COG0419 SbcC ATPase involved i 40.4 6.6E+02 0.014 29.3 25.4 39 417-455 397-436 (908)
205 PF02185 HR1: Hr1 repeat; Int 40.4 1.1E+02 0.0024 24.5 6.1 23 325-347 3-25 (70)
206 PF14932 HAUS-augmin3: HAUS au 40.3 3.8E+02 0.0082 26.7 11.1 76 318-396 70-145 (256)
207 TIGR01000 bacteriocin_acc bact 40.0 4.9E+02 0.011 27.7 18.9 8 110-117 33-40 (457)
208 PF09636 XkdW: XkdW protein; 39.1 10 0.00022 34.3 0.0 39 324-362 66-104 (108)
209 KOG0239 Kinesin (KAR3 subfamil 39.0 6.7E+02 0.014 29.0 15.6 42 266-307 179-220 (670)
210 KOG1103 Predicted coiled-coil 38.8 5.7E+02 0.012 28.2 18.2 21 332-352 155-175 (561)
211 cd07598 BAR_FAM92 The Bin/Amph 38.0 4E+02 0.0087 26.2 19.5 122 248-392 42-174 (211)
212 PRK10884 SH3 domain-containing 37.8 4.1E+02 0.0088 26.2 11.3 28 342-369 137-164 (206)
213 PF05622 HOOK: HOOK protein; 37.7 12 0.00027 41.8 0.4 179 243-455 139-320 (713)
214 PF07106 TBPIP: Tat binding pr 37.7 3.3E+02 0.0071 25.1 10.6 45 267-311 70-114 (169)
215 PRK14161 heat shock protein Gr 37.2 2.3E+02 0.005 27.3 8.7 23 344-366 66-88 (178)
216 PF01442 Apolipoprotein: Apoli 37.1 2.9E+02 0.0063 24.2 18.7 12 378-389 136-147 (202)
217 KOG4348 Adaptor protein CMS/SE 37.1 1.2E+02 0.0025 33.9 7.5 55 275-351 568-622 (627)
218 PRK12704 phosphodiesterase; Pr 36.7 6.3E+02 0.014 28.1 17.0 11 279-289 34-44 (520)
219 PF15035 Rootletin: Ciliary ro 36.7 3.3E+02 0.0071 26.3 9.7 69 248-318 60-130 (182)
220 PF09036 Bcr-Abl_Oligo: Bcr-Ab 36.3 90 0.0019 27.0 5.2 42 271-312 28-69 (79)
221 PRK04654 sec-independent trans 36.3 2.6E+02 0.0056 28.2 9.1 59 344-410 27-85 (214)
222 PRK13454 F0F1 ATP synthase sub 36.2 3.8E+02 0.0082 25.4 14.0 75 328-402 67-143 (181)
223 TIGR02680 conserved hypothetic 36.1 9.3E+02 0.02 29.8 23.4 180 271-454 751-953 (1353)
224 PF10267 Tmemb_cc2: Predicted 35.9 4.9E+02 0.011 28.3 11.8 40 362-404 248-287 (395)
225 PF11855 DUF3375: Protein of u 35.7 3.7E+02 0.008 29.3 11.0 104 248-357 100-216 (478)
226 COG5245 DYN1 Dynein, heavy cha 35.1 4.8E+02 0.01 34.3 12.5 118 341-460 2163-2345(3164)
227 KOG0980 Actin-binding protein 35.0 9E+02 0.02 29.4 23.0 43 348-390 435-477 (980)
228 PF05529 Bap31: B-cell recepto 34.3 1.6E+02 0.0034 27.7 7.0 18 391-408 173-190 (192)
229 KOG4460 Nuclear pore complex, 34.0 4.4E+02 0.0095 30.5 11.3 57 364-420 601-657 (741)
230 PF09798 LCD1: DNA damage chec 33.9 1.2E+02 0.0026 34.8 7.2 49 282-338 3-51 (654)
231 cd07673 F-BAR_FCHO2 The F-BAR 33.7 5.1E+02 0.011 26.1 21.1 34 372-405 134-169 (269)
232 PF06005 DUF904: Protein of un 33.6 2.8E+02 0.006 23.2 7.6 55 266-328 15-69 (72)
233 PRK14144 heat shock protein Gr 33.5 2.9E+02 0.0062 27.4 8.9 42 271-312 47-88 (199)
234 KOG3915 Transcription regulato 33.5 4.7E+02 0.01 29.7 11.2 47 326-379 531-577 (641)
235 PF13863 DUF4200: Domain of un 33.4 3.2E+02 0.0069 23.6 16.0 109 274-383 12-120 (126)
236 KOG0247 Kinesin-like protein [ 33.3 7.9E+02 0.017 29.3 13.4 100 300-403 492-591 (809)
237 PF14739 DUF4472: Domain of un 33.2 2.4E+02 0.0053 25.6 7.7 96 244-375 6-101 (108)
238 PF15397 DUF4618: Domain of un 33.1 5.6E+02 0.012 26.4 12.7 101 285-407 126-228 (258)
239 PRK00106 hypothetical protein; 33.1 7.5E+02 0.016 27.9 16.6 131 278-412 48-181 (535)
240 PRK14141 heat shock protein Gr 33.0 2.4E+02 0.0053 28.0 8.4 43 274-316 36-78 (209)
241 smart00787 Spc7 Spc7 kinetocho 32.7 5.9E+02 0.013 26.5 16.1 53 320-375 176-228 (312)
242 PF15070 GOLGA2L5: Putative go 32.6 8.1E+02 0.018 28.1 24.6 134 266-399 76-215 (617)
243 COG4477 EzrA Negative regulato 32.5 8.1E+02 0.018 28.1 14.7 150 236-398 240-401 (570)
244 PF06818 Fez1: Fez1; InterPro 32.4 5.2E+02 0.011 25.8 17.8 104 342-454 82-198 (202)
245 PF03962 Mnd1: Mnd1 family; I 32.3 4.7E+02 0.01 25.2 12.1 18 389-406 131-148 (188)
246 PF13514 AAA_27: AAA domain 31.8 9.7E+02 0.021 28.7 23.7 32 275-306 617-648 (1111)
247 KOG2002 TPR-containing nuclear 31.8 1E+03 0.022 29.1 16.0 74 245-329 713-786 (1018)
248 PRK09039 hypothetical protein; 31.7 6.2E+02 0.013 26.5 18.8 34 425-458 154-187 (343)
249 KOG0962 DNA repair protein RAD 31.7 1.1E+03 0.025 29.5 22.3 97 360-456 915-1028(1294)
250 cd07673 F-BAR_FCHO2 The F-BAR 31.6 5.5E+02 0.012 25.8 16.1 43 338-384 155-198 (269)
251 PF11262 Tho2: Transcription f 31.4 1.4E+02 0.0029 30.5 6.6 52 271-322 48-100 (298)
252 KOG2264 Exostosin EXT1L [Signa 31.2 2.3E+02 0.0051 32.7 8.7 23 384-406 105-127 (907)
253 PF02841 GBP_C: Guanylate-bind 30.9 5.7E+02 0.012 25.8 12.0 11 443-453 284-294 (297)
254 KOG4364 Chromatin assembly fac 30.8 9.6E+02 0.021 28.4 15.3 68 306-374 270-337 (811)
255 PF04977 DivIC: Septum formati 30.6 1.6E+02 0.0034 23.2 5.5 35 268-302 16-50 (80)
256 COG1579 Zn-ribbon protein, pos 30.5 6E+02 0.013 25.9 16.0 124 271-397 47-170 (239)
257 PRK14163 heat shock protein Gr 30.4 5.7E+02 0.012 25.6 11.9 63 271-333 42-104 (214)
258 PF13801 Metal_resist: Heavy-m 30.1 2.2E+02 0.0047 23.2 6.5 65 269-337 59-123 (125)
259 PLN03229 acetyl-coenzyme A car 29.9 5.2E+02 0.011 30.5 11.4 16 321-336 460-475 (762)
260 PF04778 LMP: LMP repeated reg 29.3 5.4E+02 0.012 25.0 9.7 72 275-347 71-146 (157)
261 PRK09174 F0F1 ATP synthase sub 29.2 5.5E+02 0.012 25.0 17.3 80 244-335 60-139 (204)
262 KOG1656 Protein involved in gl 29.1 6.3E+02 0.014 25.7 14.3 95 294-389 32-152 (221)
263 cd07652 F-BAR_Rgd1 The F-BAR ( 28.8 5.7E+02 0.012 25.1 14.0 127 318-454 60-197 (234)
264 cd04779 HTH_MerR-like_sg4 Heli 28.6 1.1E+02 0.0024 27.9 5.0 48 236-293 51-98 (134)
265 PF05557 MAD: Mitotic checkpoi 28.5 1.3E+02 0.0028 34.0 6.4 183 270-457 372-580 (722)
266 PRK10698 phage shock protein P 28.2 5.9E+02 0.013 25.1 10.8 85 321-411 29-131 (222)
267 PF04871 Uso1_p115_C: Uso1 / p 28.2 4.8E+02 0.01 24.0 10.8 38 381-420 57-95 (136)
268 PLN02372 violaxanthin de-epoxi 28.2 7.3E+02 0.016 27.6 11.5 54 325-380 381-437 (455)
269 PF08172 CASP_C: CASP C termin 28.1 5.8E+02 0.013 25.8 10.2 33 375-407 96-128 (248)
270 PF03904 DUF334: Domain of unk 27.8 6.8E+02 0.015 25.6 13.7 22 380-401 114-135 (230)
271 PRK14160 heat shock protein Gr 27.6 6.3E+02 0.014 25.2 12.3 52 271-322 63-114 (211)
272 cd07686 F-BAR_Fer The F-BAR (F 27.3 3.3E+02 0.0072 27.4 8.3 36 333-368 101-137 (234)
273 cd07647 F-BAR_PSTPIP The F-BAR 27.2 5.9E+02 0.013 24.8 17.0 32 338-369 100-131 (239)
274 PRK12704 phosphodiesterase; Pr 27.2 9E+02 0.02 26.9 16.9 12 324-335 65-76 (520)
275 PRK13454 F0F1 ATP synthase sub 27.2 5.4E+02 0.012 24.3 15.7 83 274-362 56-138 (181)
276 PF06632 XRCC4: DNA double-str 27.0 5.9E+02 0.013 27.1 10.4 47 361-407 161-208 (342)
277 PF06818 Fez1: Fez1; InterPro 26.9 1.3E+02 0.0029 29.9 5.4 43 271-321 133-175 (202)
278 PRK01156 chromosome segregatio 26.8 1E+03 0.022 27.4 25.1 34 269-302 469-502 (895)
279 KOG0288 WD40 repeat protein Ti 26.7 9.3E+02 0.02 26.9 14.5 32 351-382 100-131 (459)
280 PF02183 HALZ: Homeobox associ 26.7 1.4E+02 0.0031 22.9 4.4 35 377-411 3-37 (45)
281 PF09304 Cortex-I_coil: Cortex 26.6 5E+02 0.011 23.7 14.1 71 269-344 16-86 (107)
282 PF09730 BicD: Microtubule-ass 26.6 1.1E+03 0.024 27.7 21.0 103 341-458 73-185 (717)
283 PTZ00121 MAEBL; Provisional 26.5 1.5E+03 0.034 29.4 19.5 152 279-437 1112-1263(2084)
284 PRK10476 multidrug resistance 26.5 6.8E+02 0.015 25.3 14.9 21 271-291 88-108 (346)
285 PRK04654 sec-independent trans 26.4 3.2E+02 0.007 27.6 7.9 47 324-371 42-88 (214)
286 PRK10361 DNA recombination pro 26.1 9.5E+02 0.021 26.8 17.8 39 374-412 135-173 (475)
287 KOG0241 Kinesin-like protein [ 26.1 1.5E+02 0.0034 36.1 6.5 63 380-458 358-429 (1714)
288 PF11932 DUF3450: Protein of u 26.0 6.4E+02 0.014 24.7 14.4 109 268-391 13-121 (251)
289 PF15290 Syntaphilin: Golgi-lo 25.8 2.3E+02 0.0051 29.8 7.1 70 383-467 79-148 (305)
290 cd07638 BAR_ACAP2 The Bin/Amph 25.7 6.5E+02 0.014 24.8 12.6 79 349-437 31-109 (200)
291 KOG0995 Centromere-associated 25.6 1.1E+03 0.023 27.2 23.3 63 232-297 221-294 (581)
292 PRK14157 heat shock protein Gr 25.5 3.7E+02 0.008 27.2 8.3 38 273-310 81-118 (227)
293 TIGR01005 eps_transp_fam exopo 25.4 1E+03 0.022 26.9 18.4 65 336-403 319-386 (754)
294 PF10146 zf-C4H2: Zinc finger- 25.4 7E+02 0.015 25.0 13.8 13 325-337 37-49 (230)
295 PF03962 Mnd1: Mnd1 family; I 25.3 6.2E+02 0.013 24.4 11.2 10 245-254 30-39 (188)
296 PRK14147 heat shock protein Gr 25.0 6.2E+02 0.013 24.3 10.1 37 344-389 50-86 (172)
297 KOG2072 Translation initiation 24.5 1.3E+03 0.029 28.0 18.7 30 305-334 715-744 (988)
298 PF09744 Jnk-SapK_ap_N: JNK_SA 24.5 6.2E+02 0.013 24.1 15.1 75 242-318 2-78 (158)
299 KOG4643 Uncharacterized coiled 24.0 1.5E+03 0.032 28.3 20.7 181 268-453 473-678 (1195)
300 PF05529 Bap31: B-cell recepto 23.8 5E+02 0.011 24.3 8.5 23 284-306 119-141 (192)
301 COG3074 Uncharacterized protei 23.6 4.7E+02 0.01 22.6 7.3 57 266-326 15-74 (79)
302 PF09738 DUF2051: Double stran 23.6 8.2E+02 0.018 25.6 10.6 70 347-416 80-163 (302)
303 PRK01919 tatB sec-independent 23.5 3.6E+02 0.0079 26.3 7.5 16 320-335 38-53 (169)
304 PF05010 TACC: Transforming ac 23.4 7.4E+02 0.016 24.6 15.6 26 364-389 181-206 (207)
305 PF09787 Golgin_A5: Golgin sub 23.4 1E+03 0.022 26.1 22.2 166 233-411 114-292 (511)
306 PF03915 AIP3: Actin interacti 23.3 1E+03 0.022 26.1 16.0 46 377-422 251-300 (424)
307 KOG3612 PHD Zn-finger protein 23.2 5.6E+02 0.012 29.4 9.8 36 336-371 463-502 (588)
308 KOG4673 Transcription factor T 23.2 1.3E+03 0.029 27.5 22.6 166 274-460 344-512 (961)
309 KOG4348 Adaptor protein CMS/SE 23.2 1.4E+02 0.003 33.4 5.1 43 388-438 578-624 (627)
310 cd07625 BAR_Vps17p The Bin/Amp 23.1 7.8E+02 0.017 24.7 14.1 80 270-355 113-193 (230)
311 COG1322 Predicted nuclease of 23.0 1.1E+03 0.023 26.2 14.3 46 270-315 78-123 (448)
312 cd07605 I-BAR_IMD Inverse (I)- 22.8 7.7E+02 0.017 24.6 18.0 135 238-389 54-203 (223)
313 PRK14159 heat shock protein Gr 22.7 4.7E+02 0.01 25.3 8.2 21 345-365 71-91 (176)
314 PF07794 DUF1633: Protein of u 22.7 1.2E+03 0.025 27.1 11.9 61 237-303 578-638 (790)
315 KOG4571 Activating transcripti 22.2 3.6E+02 0.0079 28.4 7.7 34 368-401 244-277 (294)
316 cd07625 BAR_Vps17p The Bin/Amp 22.1 6.9E+02 0.015 25.1 9.4 63 275-344 163-226 (230)
317 PRK15178 Vi polysaccharide exp 22.1 7.7E+02 0.017 27.2 10.5 149 149-309 149-333 (434)
318 KOG0999 Microtubule-associated 22.0 1.3E+03 0.028 27.0 16.6 94 282-386 49-142 (772)
319 PF10147 CR6_interact: Growth 22.0 8.3E+02 0.018 24.6 10.2 74 294-374 121-194 (217)
320 KOG0018 Structural maintenance 21.8 1.6E+03 0.035 27.9 17.1 174 277-457 221-398 (1141)
321 PF06295 DUF1043: Protein of u 21.4 2.2E+02 0.0048 25.7 5.4 39 271-309 27-65 (128)
322 PF15188 CCDC-167: Coiled-coil 21.2 5.6E+02 0.012 22.4 7.6 51 338-404 17-68 (85)
323 PF00901 Orbi_VP5: Orbivirus o 21.1 1.2E+03 0.027 26.4 15.6 11 389-399 186-196 (508)
324 PF11221 Med21: Subunit 21 of 21.0 2.5E+02 0.0054 25.7 5.7 77 231-307 65-142 (144)
325 KOG1265 Phospholipase C [Lipid 20.9 1E+03 0.022 29.3 11.5 102 283-396 1075-1176(1189)
326 PRK15422 septal ring assembly 20.7 5.7E+02 0.012 22.3 7.8 56 266-325 15-73 (79)
327 PRK10246 exonuclease subunit S 20.5 1.5E+03 0.033 27.2 22.9 6 418-423 774-779 (1047)
328 PF09744 Jnk-SapK_ap_N: JNK_SA 20.5 7.5E+02 0.016 23.6 9.7 37 348-384 47-83 (158)
329 KOG0999 Microtubule-associated 20.5 1.4E+03 0.03 26.7 21.6 112 335-458 140-258 (772)
330 KOG0978 E3 ubiquitin ligase in 20.4 1.4E+03 0.031 26.8 23.1 127 273-406 397-530 (698)
331 PF03938 OmpH: Outer membrane 20.4 6.1E+02 0.013 22.5 10.2 31 302-332 62-92 (158)
332 KOG0245 Kinesin-like protein [ 20.3 6.7E+02 0.014 31.0 10.1 77 294-375 626-702 (1221)
333 PRK10132 hypothetical protein; 20.3 6.3E+02 0.014 22.6 8.3 27 283-309 12-38 (108)
334 smart00787 Spc7 Spc7 kinetocho 20.2 1E+03 0.022 24.9 17.2 64 310-377 134-198 (312)
335 PRK14149 heat shock protein Gr 20.2 5.8E+02 0.012 25.1 8.3 21 345-365 84-104 (191)
336 TIGR02209 ftsL_broad cell divi 20.1 2.9E+02 0.0063 22.3 5.4 33 271-303 26-58 (85)
337 PF13747 DUF4164: Domain of un 20.0 5.7E+02 0.012 22.0 10.2 44 348-391 36-79 (89)
338 CHL00019 atpF ATP synthase CF0 20.0 7.3E+02 0.016 23.3 15.8 27 282-308 57-83 (184)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.50 E-value=0.028 Score=62.88 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=61.8
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHh
Q 011939 260 QEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLR 339 (474)
Q Consensus 260 leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~R 339 (474)
|....-..=+-|..|+.|-|+.+.++.+|.+.++.++..|..|=|+|+||+..+- .+-.+|..|||.|
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r 518 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKAR 518 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 3443334456799999999999999999999999999999999999999986543 3667899999999
Q ss_pred hhHHHH
Q 011939 340 RRFESL 345 (474)
Q Consensus 340 rr~E~l 345 (474)
+..|.-
T Consensus 519 ~~ee~~ 524 (697)
T PF09726_consen 519 KEEEEK 524 (697)
T ss_pred hHHHHh
Confidence 998763
No 2
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.08 E-value=0.14 Score=59.12 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=143.0
Q ss_pred ccccccccccccchhch-------HHHHHHHHhhcCCCCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 011939 231 VGVKTRLKDVSNALTTS-------KELLKIINRMWGQEDR----PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEI 299 (474)
Q Consensus 231 ~~~k~r~~e~~~~L~TS-------~ELlkVlnriw~leeq----~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~ei 299 (474)
.+.+..++|.---|.|- +.=|+-|.++.-..+| .+--|.-+.-|+-||.+||...++++.-+..++.+|
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~em 306 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEM 306 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655554 2233445555433332 334456677899999999999999998888887777
Q ss_pred HHH---------HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHH---------------HhhhHHHHhHHHHHHH--
Q 011939 300 SYL---------MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERK---------------LRRRFESLNKKLGKEL-- 353 (474)
Q Consensus 300 e~l---------~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK---------------~Rrr~E~lN~KL~~EL-- 353 (474)
+++ =|.+||||+.-=--|-+-.+..|++|-.+||-=|- --+++|.-|.||-.-|
T Consensus 307 ad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVr 386 (1243)
T KOG0971|consen 307 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVR 386 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 654 58899999988888888888888888877775433 2478999999998766
Q ss_pred -----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhh
Q 011939 354 -----AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQ 428 (474)
Q Consensus 354 -----aE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQ 428 (474)
+..|.-..++.+++|+-+-.-.-|+.+-.-|-++|...+..|-.|+..-+... --|-.+-|
T Consensus 387 LRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl---GAE~MV~q----------- 452 (1243)
T KOG0971|consen 387 LRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL---GAEEMVEQ----------- 452 (1243)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHH-----------
Confidence 45566677888889888888888888888888888888888888886644332 22333333
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 429 IKLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 429 MKL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
|+|-++.||||.-.|+.-++|||+
T Consensus 453 --LtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 453 --LTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred --HHhhccCHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.03 E-value=0.35 Score=53.24 Aligned_cols=116 Identities=19% Similarity=0.321 Sum_probs=65.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhhcc----cHHHHHHHHHHhHHHHHHH-HHhHHH
Q 011939 342 FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIE-QVCDELARDIND----DKSEVEELKRESAIALEEV-EKEREM 415 (474)
Q Consensus 342 ~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE-~vCDELAkeI~e----dkaEVe~LKres~k~reE~-EeER~M 415 (474)
++.-+-.|++||+++...=.+.+.||-.-|-.-.=|. .+||. +-.+.+ ...|...|.......++++ +-.+++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~-~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA-SLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455667888888888777777777776664222222 22322 223333 3334444444444444444 335556
Q ss_pred HHHhHhhhHHhhh----------------hhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 416 IQVADVLREERAQ----------------IKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 416 LqmAEvWREERVQ----------------MKL~eAk~~lEeK~s~ldkL~~elE~FL~s 458 (474)
.++++...|||.+ +.|+|++-.|.|+.+.+-.++-|=|-+...
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E 439 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE 439 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666653 567777777777777666666655555544
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.55 E-value=0.27 Score=58.09 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 011939 322 EAAIESIAGELEVERKLRRRFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL 398 (474)
Q Consensus 322 ~aai~slk~ELe~ERK~Rrr~E~lN~KL---~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~L 398 (474)
...+..+..+++.-.......+.--..| -.++.+.+..+...++....-...-+-+...+.++...|.+.+.+++.+
T Consensus 835 ~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444344444444444444 4567777777777776665555555556666777777777777777777
Q ss_pred HHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 399 KRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 399 Kres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
..+..++..+.++-+.-... .++..|.++ ..|......+..|..+|+.|+....
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 915 ETFLEKDQQEKEELISSKET----SNKKAQDKV----NDIKEKVKNIHGYMKDIENKIQDGK 968 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77666665554443322222 234555555 3455666788888888998887654
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.40 E-value=0.39 Score=47.18 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=77.0
Q ss_pred HhhcCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH--HHHhhhhhHHHHHHHHHHHHHH
Q 011939 255 NRMWGQEDRPSSSMS-LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE--KAAWKNKEREVVEAAIESIAGE 331 (474)
Q Consensus 255 nriw~leeq~~s~~S-lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE--K~awKsKE~eki~aai~slk~E 331 (474)
..|+.+.+.....++ +-..+..||..+|..|..+..|+....-+++.+...+.+= |.......+..+..-|..++.+
T Consensus 32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345555665443334 6677888888888888888877766666666555444442 2222245577778888999999
Q ss_pred hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011939 332 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK 371 (474)
Q Consensus 332 Le~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ER 371 (474)
|+.+-..|-.+|.--.-|-.||.-.+....+-+.+|...-
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 9999999999998888888888887777766666665433
No 6
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.39 E-value=0.44 Score=52.46 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh----------------HHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF----------------AEEKAAWKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql----------------aEEK~awKsKE~eki~aai~slk~ELe~ 334 (474)
|..|+.|++.++....+.+++....+.+++..+..+ -||....=.+|-.+|...|..++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555555555555555555555555544332222 2333444556889999999999999999
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 011939 335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA---RVVIEQVCDELARDINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa---RellE~vCDELAkeI~edkaEVe~LKres~k~r 406 (474)
|.-+|..++.-..=|-.||.-.+...++.+.|+-.-... -..=+..-+||+.-|.|.+++-+...+...+.+
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~di 269 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDI 269 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999888887766554322111 123466778899999988888887766555433
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.35 E-value=1.2 Score=43.87 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRR-FESLNK 347 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr-~E~lN~ 347 (474)
.-+..|+.|++..+.+..+..+.+.....++..|-+.+.++-++ +..+...|+.+++||++-++.... ++.|-.
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 44777888888888888888888888888888888888888766 556677789999999887765544 444444
Q ss_pred HH
Q 011939 348 KL 349 (474)
Q Consensus 348 KL 349 (474)
++
T Consensus 150 ~~ 151 (312)
T PF00038_consen 150 QI 151 (312)
T ss_dssp T-
T ss_pred cc
Confidence 44
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.34 E-value=1.7 Score=49.07 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=4.5
Q ss_pred cccccccchhch
Q 011939 236 RLKDVSNALTTS 247 (474)
Q Consensus 236 r~~e~~~~L~TS 247 (474)
++.++...|.-.
T Consensus 171 ~~~~~~~~l~~~ 182 (1164)
T TIGR02169 171 KKEKALEELEEV 182 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.33 E-value=2.1 Score=48.38 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=4.2
Q ss_pred CcccHHHHHH
Q 011939 102 QPVSARKLAA 111 (474)
Q Consensus 102 ~~vSARKLaA 111 (474)
.+||.+.+..
T Consensus 115 ~~~~~~~~~~ 124 (1164)
T TIGR02169 115 QRVRLSEIHD 124 (1164)
T ss_pred ccccHHHHHH
Confidence 3445444433
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.30 E-value=0.74 Score=51.87 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------hhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 011939 270 LVSALHAELERARLQVNQLIQE--------------QRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 335 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E--------------~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~E 335 (474)
=|+.|++||..+|..=.||-.. -+..+++.|.|-.++.+=. +.+++=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3777888888877665555544 2223344444444444332 22333456788888999999
Q ss_pred HHHhhhHHHH
Q 011939 336 RKLRRRFESL 345 (474)
Q Consensus 336 RK~Rrr~E~l 345 (474)
++.|..+|.-
T Consensus 501 ~~~R~~lEkQ 510 (697)
T PF09726_consen 501 RRQRASLEKQ 510 (697)
T ss_pred HHHHHHHHHH
Confidence 9999988853
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=1.6 Score=51.88 Aligned_cols=178 Identities=16% Similarity=0.237 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHhHHHHH--Hhhhhh-HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHH
Q 011939 281 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKA--AWKNKE-REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK 357 (474)
Q Consensus 281 AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~--awKsKE-~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~K 357 (474)
.++.|-+...+......++...-.++.-+.. +-|... +..|+.....++...+..++-++.+|.-+.++-..|.-+.
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666665552222 222333 3347777888888899999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHH-HhHhhhHH--hhhhhhhHh
Q 011939 358 HSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQ-VADVLREE--RAQIKLSEA 434 (474)
Q Consensus 358 ss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLq-mAEvWREE--RVQMKL~eA 434 (474)
+-++++.+++|+.++...-+|..-...-..|.+...|++.|.....+...++++...-|. =++..++| ..|-.|+..
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888888888887776666666666554442 34444444 345556666
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 435 KYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 435 k~~lEeK~s~ldkL~~elE~FL~s 458 (474)
...+-+.-+.++-...||+-.+..
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655543
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.02 E-value=1.4 Score=54.79 Aligned_cols=89 Identities=26% Similarity=0.382 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 011939 272 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL 349 (474)
Q Consensus 272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL 349 (474)
+.|..|+..-+.+|..|.+|++.-...+.+|.-.+ .+|++.--+|...++...|+++...|+.|++.|..+|...+||
T Consensus 967 ~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 967 KNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433 4567777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011939 350 GKELAETKHSL 360 (474)
Q Consensus 350 ~~ELaE~Kss~ 360 (474)
.-||...+.+.
T Consensus 1047 e~el~~~~e~~ 1057 (1930)
T KOG0161|consen 1047 EGELKDLQESI 1057 (1930)
T ss_pred HHHHHHhhhHH
Confidence 98885554443
No 13
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.74 E-value=3.6 Score=49.27 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 352 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E 352 (474)
-+-.||+.+..+++-.+.|.+..+..+-.---+..+|+++-...+..++.+-|..+++||++..+-..++-.-+.|+..+
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~ 544 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSL 544 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34456776666665555555541111111111233445555556678899999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939 353 LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 353 LaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~ 389 (474)
..++..+..-+.-+.+.+.+-+...++.|..+-.+..
T Consensus 545 rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 545 RKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 8888888888888999999999999999998766544
No 14
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=1.7 Score=50.99 Aligned_cols=203 Identities=18% Similarity=0.251 Sum_probs=136.5
Q ss_pred ccccccchhch-HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh
Q 011939 237 LKDVSNALTTS-KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN 315 (474)
Q Consensus 237 ~~e~~~~L~TS-~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs 315 (474)
+.++...|.+. -+|--+..++= ..+ +.-...-+..|..++..++.+|++...-.+....+|.-+=+.+.+.+..+.+
T Consensus 710 f~~l~~ql~l~~~~l~l~~~r~~-~~e-~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~ 787 (1174)
T KOG0933|consen 710 FRDLKQQLELKLHELALLEKRLE-QNE-FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER 787 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Confidence 34444444444 34444555552 111 2244566888889999999999998888877777787777777777766555
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 011939 316 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 395 (474)
Q Consensus 316 KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEV 395 (474)
+-.| ...-|+..+..++..++-=++.|..-.+|.-|..+.+.++...-+.|+ -++.-|+.|..+|++.++.|
T Consensus 788 rlkd-l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 788 RLKD-LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4333 345677888888888888888888888998888887776666555554 46777888999999999999
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHhH------hhhHHhhhhhhhHhhhhhhhhhHHHHHHH
Q 011939 396 EELKRESAIALEEVEKEREMIQVAD------VLREERAQIKLSEAKYQLEEKNAAVDKLR 449 (474)
Q Consensus 396 e~LKres~k~reE~EeER~MLqmAE------vWREERVQMKL~eAk~~lEeK~s~ldkL~ 449 (474)
.....+..++..|+.++..++.=-+ +=..|-.+-+..+-++...++.-.++++.
T Consensus 860 ~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~ 919 (1174)
T KOG0933|consen 860 DKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLE 919 (1174)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhh
Confidence 8888888888888877666553222 11233444444455555555555555544
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.12 E-value=7 Score=46.14 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=19.3
Q ss_pred HhHhhhH-HhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939 418 VADVLRE-ERAQIKLSEAKYQLEEKNAAVDKLRSQLE 453 (474)
Q Consensus 418 mAEvWRE-ERVQMKL~eAk~~lEeK~s~ldkL~~elE 453 (474)
+.+.|++ ...|.++.++...+.+....++.|....+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555554 34555555555555555555555555443
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=95.10 E-value=5.2 Score=44.92 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhcc--CCcccchhhc
Q 011939 440 EKNAAVDKLRSQLEAFSRNQKG--KRKRTQFCKS 471 (474)
Q Consensus 440 eK~s~ldkL~~elE~FL~sk~~--~~~~~~~~~~ 471 (474)
++...+......++.+|..-.. .....|.|..
T Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r 459 (880)
T PRK02224 426 EREAELEATLRTARERVEEAEALLEAGKCPECGQ 459 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 4444555555555666655431 1222566653
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.84 E-value=5 Score=42.38 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHhhhcccHHHHHHHHH
Q 011939 353 LAETKHSLLKAVKDLDTEKRARVVIEQ--VCDELARDINDDKSEVEELKR 400 (474)
Q Consensus 353 LaE~Kss~~~alkelE~ERKaRellE~--vCDELAkeI~edkaEVe~LKr 400 (474)
|.+++..+..+-.+++.-.+....++. .|.---+.+.+...++..|..
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d 306 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKD 306 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHH
Confidence 444555555555555555666666644 555444445444344444443
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.64 E-value=11 Score=44.49 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939 249 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 307 (474)
Q Consensus 249 ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla 307 (474)
+|..+..+|-.+..+-.....-+..++.++..+...+.++.......+.+++.+-..++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443444444555566677777777777777777666666666666666655
No 19
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.53 E-value=8 Score=42.98 Aligned_cols=129 Identities=24% Similarity=0.314 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhH------HH---HHHHHHHHHHHhHHHHHHhhhHHHH
Q 011939 275 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER------EV---VEAAIESIAGELEVERKLRRRFESL 345 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~------ek---i~aai~slk~ELe~ERK~Rrr~E~l 345 (474)
.+||-.||.-|.+-.+++-....+|..|--.+.+=|.-|-.+++ ++ ....+-.+.+|+.-=++..+.+|.-
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45555555555555444444444444444444444444444322 22 3466778888888888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh----cccHHHHHHHHHHhH
Q 011939 346 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI----NDDKSEVEELKRESA 403 (474)
Q Consensus 346 N~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI----~edkaEVe~LKres~ 403 (474)
...|.+|..-....+..+.++++.|.-.|.-.+.=|..|-.+| ..++.||+++++...
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~ 232 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR 232 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 9999999999999999999999999988888888887776665 456677777766544
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.40 E-value=10 Score=42.16 Aligned_cols=46 Identities=33% Similarity=0.388 Sum_probs=24.1
Q ss_pred hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011939 245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 293 (474)
Q Consensus 245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~ 293 (474)
+--.||++....+ +++-..--.-|..|+.+|.+++....+|..+.+
T Consensus 150 kE~eeL~~~~~~L---e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 150 KEKEELLKENEQL---EEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544433 333333334566666666666666666655543
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.19 E-value=16 Score=46.13 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHH--HHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK--AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK--~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
.++.|+..++.-..++.+|..-.....+++..|-+++.|.. .+--++....+..-|++++.+|+.|-+.+--++...+
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666666666667777889999999987654 4445666777788899999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~ 389 (474)
.|-.|+...+ ..||.+-..+..++.---+...++.
T Consensus 1326 ~l~~e~~~l~-------e~leee~e~~~~l~r~lsk~~~e~~ 1360 (1930)
T KOG0161|consen 1326 QLEHELDLLR-------EQLEEEQEAKNELERKLSKANAELA 1360 (1930)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888755433 3455555555444443333333333
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=93.99 E-value=13 Score=41.81 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEIS 300 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie 300 (474)
.++.-+...++.....+.+|+.+....+.+++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e 499 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLE 499 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666655554444444
No 23
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.87 E-value=17 Score=43.30 Aligned_cols=189 Identities=14% Similarity=0.213 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHH-------HhHHHHHHhh
Q 011939 271 VSALHAELERARLQVNQLIQEQRSD---QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAG-------ELEVERKLRR 340 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~---~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~-------ELe~ERK~Rr 340 (474)
+.+.+.||++.-.+|+.|+.-.+-. +.+++-.+..++=-+---..-+.-++-+.++.+.+ ++....+.=+
T Consensus 686 ~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k 765 (1174)
T KOG0933|consen 686 LRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALK 765 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666655544332 22333334333333222223334444444444433 3334444433
Q ss_pred hHHHHhHH------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Q 011939 341 RFESLNKK------------------LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRES 402 (474)
Q Consensus 341 r~E~lN~K------------------L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres 402 (474)
..+.--.. |.+||..+|.-+...-+++|+-....+.|.--|++|-++|..++...+.+....
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222 455666666666666677777777788888899999999999988888887776
Q ss_pred HHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 403 AIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 403 ~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
..+-.|+..=+-=+-=++.=. .-+|-.|.+-+.-+-+=+..++.+..+.|.|+..+.
T Consensus 846 ~~l~~e~~~l~~kv~~~~~~~-~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~ 902 (1174)
T KOG0933|consen 846 SSLKSELGNLEAKVDKVEKDV-KKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS 902 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh
Confidence 655444433211111111111 234555555555555556677778888888887765
No 24
>PRK11637 AmiB activator; Provisional
Probab=93.13 E-value=7.9 Score=40.50 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=12.5
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHH
Q 011939 381 CDELARDINDDKSEVEELKRESAIA 405 (474)
Q Consensus 381 CDELAkeI~edkaEVe~LKres~k~ 405 (474)
-++|...+.++.+++..|+++..++
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544443
No 25
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.65 E-value=2.4 Score=47.47 Aligned_cols=139 Identities=23% Similarity=0.322 Sum_probs=83.3
Q ss_pred hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 011939 245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA 324 (474)
Q Consensus 245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa 324 (474)
.|-.+|...-+.. ++.-++-.+.|..+-.||+.|+.+|..|++|. ++|.-|++...-.-+...-+-|.+
T Consensus 214 ~t~~el~~~~s~~---dee~~~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~~- 282 (629)
T KOG0963|consen 214 DTQNELFDLKSKY---DEEVAAKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDIDA- 282 (629)
T ss_pred hhhhHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchHH-
Confidence 3444444433332 33344556889999999999999999998875 566666665543333221122222
Q ss_pred HHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhcccHHHHHHHHHH
Q 011939 325 IESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA---RDINDDKSEVEELKRE 401 (474)
Q Consensus 325 i~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELA---keI~edkaEVe~LKre 401 (474)
+..-|.. .+++|.+|..++-..+.|+.. .+|..|.++. ++...+..++++|+.+
T Consensus 283 ---~~~~L~~-------kd~~i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~k 339 (629)
T KOG0963|consen 283 ---LGSVLNQ-------KDSEIAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEK 339 (629)
T ss_pred ---HHHHHhH-------HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333 788899998888777777654 3444444433 3344455566666655
Q ss_pred --hHHHHHHHHHhHHHHH
Q 011939 402 --SAIALEEVEKEREMIQ 417 (474)
Q Consensus 402 --s~k~reE~EeER~MLq 417 (474)
+..+++|+..|-.+|+
T Consensus 340 L~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 340 LNSRSDYEEIKKELSILK 357 (629)
T ss_pred HhhhccHHHHHHHHHHHH
Confidence 3356667777777775
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=92.00 E-value=25 Score=39.51 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=13.3
Q ss_pred hhchHHHHHHHHhhcCCCC
Q 011939 244 LTTSKELLKIINRMWGQED 262 (474)
Q Consensus 244 L~TS~ELlkVlnriw~lee 262 (474)
+++.++..++|.+|-+++.
T Consensus 141 ~~~~~~r~~~~~~~~~~~~ 159 (880)
T PRK03918 141 LESDESREKVVRQILGLDD 159 (880)
T ss_pred hcCcHHHHHHHHHHhCCHH
Confidence 4566788888888866544
No 27
>PRK09039 hypothetical protein; Validated
Probab=91.94 E-value=17 Score=37.65 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 350 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~ 350 (474)
|+.+..||+...++|.+|-.--..++. ....+...|..++.+|+.=+..|.++|.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788899999999999874432222221 2344455555666666655556666666555444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK 430 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMK 430 (474)
....+++..+...-.+|..++ .+-.|--..|.-.+++|++||.....+..+++.=.... .+-++|+.
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k-------~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~------~~~~~~i~ 175 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEK-------QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD------RESQAKIA 175 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 433344433333322332222 22334444455556666666666555544433211111 22222222
Q ss_pred hhHhh--hhhhhhhHHHHHHHHHHHHHH
Q 011939 431 LSEAK--YQLEEKNAAVDKLRSQLEAFS 456 (474)
Q Consensus 431 L~eAk--~~lEeK~s~ldkL~~elE~FL 456 (474)
-...+ .++.+|...|.+++.++..=|
T Consensus 176 ~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 176 DLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22222 234456667777777774333
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.40 E-value=25 Score=38.37 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=43.3
Q ss_pred HHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 011939 382 DELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ 459 (474)
Q Consensus 382 DELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk 459 (474)
+++..+..+-+.+.+.++.+..+++.|++.=+-.+.-+| +||..|.-.++.-.+.-.....+|.+.-.+.
T Consensus 375 qql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 375 QQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444555566666666666677777777777776665 5565666555555566666677777654443
No 29
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.28 E-value=26 Score=41.76 Aligned_cols=182 Identities=21% Similarity=0.262 Sum_probs=111.0
Q ss_pred HHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHH------H
Q 011939 252 KIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA------I 325 (474)
Q Consensus 252 kVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa------i 325 (474)
.+.+.+--|+++-.++.--=.-+..+|+.++..+..|..+.. +|++.++-+-+||..-+..+.+-++.- |
T Consensus 234 E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~----ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 234 EINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIK----ELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333333333444333222233455678888888888877764 678888888888877777666555544 8
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHH-HHHHhhhccc------
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDT-------EKRARVVIEQVC-DELARDINDD------ 391 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~-------ERKaRellE~vC-DELAkeI~ed------ 391 (474)
.++.++++.++.-|......+.++..++.+-+--+++....|.. .++.=..+++-- |=+||. |.+
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq-gr~sqFssk 388 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ-GRYSQFSSK 388 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-ccccccCcH
Confidence 89999999999999999999999988777777766665544432 222222222211 122222 111
Q ss_pred -------HHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939 392 -------KSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLE 453 (474)
Q Consensus 392 -------kaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE 453 (474)
+.|++.|++- +.-. -=+++=.||-+.+++..+++|+..+..|...|.
T Consensus 389 ~eRDkwir~ei~~l~~~-------------i~~~--ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 389 EERDKWIRSEIEKLKRG-------------INDT--KEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHH-------------Hhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1222222221 1111 114566788899999999888888877766654
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.05 E-value=38 Score=39.93 Aligned_cols=80 Identities=26% Similarity=0.362 Sum_probs=60.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHHhH---H
Q 011939 339 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-----------RVVIEQVCDELARDINDDKSEVEELKRESA---I 404 (474)
Q Consensus 339 Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa-----------RellE~vCDELAkeI~edkaEVe~LKres~---k 404 (474)
.+.++.-|..|++||++-..-++-.-.+|+.++++ +..++.---+|.++|.+...++-+-|++.+ .
T Consensus 272 m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfdd 351 (1265)
T KOG0976|consen 272 MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDD 351 (1265)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 35678889999999998776666666667777654 456777788888888888888877777744 4
Q ss_pred HHHHHHHhHHHHHH
Q 011939 405 ALEEVEKEREMIQV 418 (474)
Q Consensus 405 ~reE~EeER~MLqm 418 (474)
.+.|+|++|-|+-|
T Consensus 352 k~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 352 KLNELEKKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHHH
Confidence 55688888888755
No 31
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.02 E-value=14 Score=43.23 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=64.1
Q ss_pred ccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh
Q 011939 237 LKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK 316 (474)
Q Consensus 237 ~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK 316 (474)
++-+.--|+.|.+..+||+++. + ...--+|-+..+--+||.+=..|+--.--+.....+++.+++...+=-..--+|
T Consensus 839 ~~K~~~l~kns~k~~ei~s~lk--e-~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk 915 (1259)
T KOG0163|consen 839 IRKINALLKNSLKTIEILSRLK--E-GREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSK 915 (1259)
T ss_pred HHHHHHHHHhhHHHHHHHHHHh--c-chHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566888999999999986 3 444555678888888888888887433333444556666666654433333345
Q ss_pred hHHHHHH--HHHHHHHHhHHHHHHh
Q 011939 317 EREVVEA--AIESIAGELEVERKLR 339 (474)
Q Consensus 317 E~eki~a--ai~slk~ELe~ERK~R 339 (474)
|+.-|.. .++.+.+.+|.||+-|
T Consensus 916 ~~q~~~e~er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 916 EQQQIEELERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5544443 3566777888888754
No 32
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.93 E-value=17 Score=35.55 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011939 315 NKEREVVEAAIESIAGELEVERKLRRR-FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA 385 (474)
Q Consensus 315 sKE~eki~aai~slk~ELe~ERK~Rrr-~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELA 385 (474)
+.--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-.. .++.+...++..++|.+.
T Consensus 91 ~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 91 QSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 334455556677788888888887766 788888888888887776655221 122223345555555443
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.92 E-value=42 Score=40.14 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHH
Q 011939 267 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 322 (474)
Q Consensus 267 ~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~ 322 (474)
.-.-|..++.++.+++..++......+..+.+.+.+-.++.+++...+.+-...+.
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 688 (1201)
T PF12128_consen 633 INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLN 688 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999998888888888888888877777777776665555444
No 34
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=90.87 E-value=6.1 Score=35.30 Aligned_cols=55 Identities=20% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 011939 248 KELLKIINRMWGQEDRP------SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYL 302 (474)
Q Consensus 248 ~ELlkVlnriw~leeq~------~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l 302 (474)
+-|+|.+..+-.+.+.. ...-.+.-.+..+|+.+...+..+..=..+++.++++.
T Consensus 19 ~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y 79 (139)
T PF05615_consen 19 KRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENY 79 (139)
T ss_pred HHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655554432 24445677777888888887777766666655544443
No 35
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=90.43 E-value=3.5 Score=40.24 Aligned_cols=151 Identities=21% Similarity=0.330 Sum_probs=78.1
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhh-hhhHHHHHHHH
Q 011939 247 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVEAAI 325 (474)
Q Consensus 247 S~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~aai 325 (474)
-+|||+.|+=+= +|-++-+ -+|.+|++|- ++.++.|.+=-...+.+-+.-|--|-.+-. ..+.+ ++.
T Consensus 12 k~dLL~LLsilE--GELqARD-~vI~~Lkaer------~~~~~~e~~Yg~~~~~dp~~ALqRD~~~~~~~~~~~---~v~ 79 (192)
T PF09727_consen 12 KDDLLKLLSILE--GELQARD-VVIAMLKAER------KKVFLLEARYGFYNPNDPFLALQRDSEAAGGEKEEE---DVY 79 (192)
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHHHHHHhh------hhHHHHHHHHcCCCcCcHHHHHHhHHHhcCCCCccC---cch
Confidence 368998888763 5556544 4578887762 233333331111112222222222211111 11111 112
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHhhhcccHHH
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVV-----------IEQVCDELARDINDDKSE 394 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRel-----------lE~vCDELAkeI~edkaE 394 (474)
..=-.+|+ ++--+--..+.|+..-|+.+...-.+.+.|||.|++...- ||.-.+-|-+.|.-.++.
T Consensus 80 ~~pl~~Le---~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~ 156 (192)
T PF09727_consen 80 ENPLAELE---KLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQ 156 (192)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222232 2333444567889999999999999999999999998764 444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHh
Q 011939 395 VEELKRESAIALEEVEKE 412 (474)
Q Consensus 395 Ve~LKres~k~reE~EeE 412 (474)
+..+-++..|....+++|
T Consensus 157 ~~~~EkE~~K~~~~l~eE 174 (192)
T PF09727_consen 157 QKKLEKEHKKLVSQLEEE 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444443333333
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.76 E-value=49 Score=39.11 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHhHHHH
Q 011939 282 RLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR-----------RFESLNKKLG 350 (474)
Q Consensus 282 R~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rr-----------r~E~lN~KL~ 350 (474)
...|.|+--..+..-++|+.-|+++.--.. -=.+|.--....|..++.||+.+++.|- =++..|.||.
T Consensus 251 ~s~i~E~d~~lq~sak~ieE~m~qlk~kns-~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmklt 329 (1265)
T KOG0976|consen 251 CSMIEEQDMDLQASAKEIEEKMRQLKAKNS-VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLT 329 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 344444444444444445444444322111 1123444445678889999999998664 4688999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHHh
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL---ARDINDDKSEVEELKRES 402 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL---AkeI~edkaEVe~LKres 402 (474)
++.+++..++..+...+|-=-.-+.=||+--|++ |+-|.+.+.-|+++++..
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL 384 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL 384 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999998887766544433333333333333322 344555555555555543
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.90 E-value=36 Score=41.23 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 011939 349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 410 (474)
Q Consensus 349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~E 410 (474)
.--||...+.....+++.+|.-+.+=.-+..--+|-.-+|.+.+.++..+|.|...+..+++
T Consensus 505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 34566677777777888888888887777888888888899999999998888776655543
No 38
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.44 E-value=20 Score=32.95 Aligned_cols=93 Identities=28% Similarity=0.369 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 011939 271 VSALHAELERARLQ-------VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE 343 (474)
Q Consensus 271 vsaLk~EL~~AR~r-------I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E 343 (474)
+.+|+.|.+-|..+ |++|+++.-.-.++|..|-+++.-= -.+-|++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 45677777666555 5555555555566777775544311 12478999999999999999999999999
Q ss_pred HHhHHHH---HHHHHHHHHHHHHHhHHH
Q 011939 344 SLNKKLG---KELAETKHSLLKAVKDLD 368 (474)
Q Consensus 344 ~lN~KL~---~ELaE~Kss~~~alkelE 368 (474)
.||+|+. .||..+...+.-+...|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999964 566666665555555444
No 39
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.13 E-value=43 Score=36.34 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=28.8
Q ss_pred hchHHHHHHHHhhcCCC-CCCC---cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011939 245 TTSKELLKIINRMWGQE-DRPS---SSMSLVSALHAELERARLQVNQLIQEQ 292 (474)
Q Consensus 245 ~TS~ELlkVlnriw~le-eq~~---s~~SlvsaLk~EL~~AR~rI~eL~~E~ 292 (474)
..-.+|..++|.++... +... ...++|...+.+++....+|.+|..+.
T Consensus 223 ~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~ 274 (582)
T PF09731_consen 223 PEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEE 274 (582)
T ss_pred hhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33388999999986322 2222 345666666666666666666555543
No 40
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.87 E-value=24 Score=33.08 Aligned_cols=66 Identities=20% Similarity=0.431 Sum_probs=46.6
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 337 KLRRRFESLNKKLGKELAETKHSLLK-------AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 337 K~Rrr~E~lN~KL~~ELaE~Kss~~~-------alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
++++.++.++.+|..|+..++..++- -+++.......+ +.++-.++..+|++.+.++|.+|-+..+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888888888777775543 223333332222 7888889999999999999988877554
No 41
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.74 E-value=71 Score=39.05 Aligned_cols=40 Identities=33% Similarity=0.386 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHH
Q 011939 315 NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 354 (474)
Q Consensus 315 sKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELa 354 (474)
.+.+..+.++.++++.|.+++.|+|.+.+.+++.|-.++.
T Consensus 542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 3455667788889999999999999999999998887776
No 42
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.42 E-value=75 Score=38.35 Aligned_cols=62 Identities=6% Similarity=0.070 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 333 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 333 (474)
+..|..++...+..|.++..+......+++.+...+.+-+..-..++ +.+...++.++..+.
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 951 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN-KKAQDKVNDIKEKVK 951 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33444445555555555555555544555554444444332222222 333444444444443
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.21 E-value=23 Score=42.34 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 350 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~ 350 (474)
+..+.--|---.++|.++..|.-....|++.+.+-|- .+..-.+...+.++.+-.+++.-=..=+.+++.++.++.-+-
T Consensus 311 ~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~-~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~ 389 (1074)
T KOG0250|consen 311 IEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD-DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN 389 (1074)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433344455555555555555555555444332 222333444455555544444444444445555555544443
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH-hHHHHHHhHhhhHHhhhh
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK-EREMIQVADVLREERAQI 429 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee-ER~MLqmAEvWREERVQM 429 (474)
+++-.- ..+.-.+++.-.+..+-+|.+-..| ++|.+.++.+.....+|.+. ++.++|+.-.-..--.++
T Consensus 390 ~~~~~~---~~e~e~k~~~L~~evek~e~~~~~L-------~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 390 NELGSE---LEERENKLEQLKKEVEKLEEQINSL-------REELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred hhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1122223333333344444433333 33444444444444444432 355566655554444444
Q ss_pred h
Q 011939 430 K 430 (474)
Q Consensus 430 K 430 (474)
+
T Consensus 460 ~ 460 (1074)
T KOG0250|consen 460 K 460 (1074)
T ss_pred H
Confidence 4
No 44
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.04 E-value=5.5 Score=40.78 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=31.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 011939 360 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE 408 (474)
Q Consensus 360 ~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE 408 (474)
+...-++-+...+.=+-+|+-+++|.++|.+.+.|...|..+-.+.|.+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~ 100 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE 100 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444445577778888888888888888887765555543
No 45
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.00 E-value=19 Score=38.88 Aligned_cols=163 Identities=26% Similarity=0.375 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchh---HHHHHHHHhHHHHHH------hhhhhHHHHHHHHHHHHHHhHHHHHH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQS---EISYLMKCFAEEKAA------WKNKEREVVEAAIESIAGELEVERKL 338 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~---eie~l~KqlaEEK~a------wKsKE~eki~aai~slk~ELe~ERK~ 338 (474)
.|++.|+.. +-|--|+.|+.+++..-. +=|+|.-+|.-|+-. +..-|..|..-+-+-|--.|+.||+
T Consensus 106 ~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~- 181 (561)
T KOG1103|consen 106 ASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK- 181 (561)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 355544432 345557777777654321 223333333332211 1111222333333445566787765
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HhhhcccHHHHHHHHHHhHH
Q 011939 339 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL--------------ARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 339 Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL--------------AkeI~edkaEVe~LKres~k 404 (474)
|-|.+..-|.-| -|.++.+ --|.-.|+-+||=++-.+= -+|+ ..++.|| |
T Consensus 182 --RHeqis~mLilE---cKka~~K---aaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqve-------k 245 (561)
T KOG1103|consen 182 --RHEQISLMLILE---CKKALLK---AAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQVE-------K 245 (561)
T ss_pred --HHHHHHHHHHHH---HHHHHHH---HHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHHH-------H
Confidence 344455555544 3333333 3455556666654443322 1121 1233443 5
Q ss_pred HHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 405 ALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 405 ~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~s 458 (474)
..+|++.||..|+ |+.=|||.-|-- |-+-+.-|.+...++|+-+..
T Consensus 246 ~i~EfdiEre~LR-Ael~ree~r~K~-------lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 246 LIEEFDIEREFLR-AELEREEKRQKM-------LKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhh
Confidence 6678888998886 788888877733 333455566666777776654
No 46
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.51 E-value=71 Score=37.16 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=44.9
Q ss_pred hhHHHHhHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 011939 340 RRFESLNKKLGKELAETKHSLL-------KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA 403 (474)
Q Consensus 340 rr~E~lN~KL~~ELaE~Kss~~-------~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~ 403 (474)
..+|..+++|-.|+.-.++-+. .-.+++|-.+-....|-.=||.+..+++.-++|+.+|..+..
T Consensus 241 ~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 241 ASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777666655322 223567777777777777799999999999988888776644
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=75 Score=37.55 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=48.5
Q ss_pred HhhhHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 011939 338 LRRRFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA 403 (474)
Q Consensus 338 ~Rrr~E~lN~KL---~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~ 403 (474)
+-.++|.||-|+ ---|.|+..-+-++..++|.-++.|+++-.--|+|-..|.|+.+.+-.|-.|..
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 445677888775 335667777777888888888888888888888888888887777666655544
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.92 E-value=51 Score=34.97 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH---HHHHhHHHHHHhHhh-hH
Q 011939 349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE---EVEKEREMIQVADVL-RE 424 (474)
Q Consensus 349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~re---E~EeER~MLqmAEvW-RE 424 (474)
+..++.+.+..+.....+++.-.+.+.-++.--.+|-..+.+...++..+..+...+.. +++.|+.+..+..-+ .+
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~ 414 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555554555555555555555555555555555555444433 345555554332222 44
Q ss_pred Hhhh
Q 011939 425 ERAQ 428 (474)
Q Consensus 425 ERVQ 428 (474)
.++.
T Consensus 415 ~g~~ 418 (562)
T PHA02562 415 SGIK 418 (562)
T ss_pred hhHH
Confidence 4443
No 49
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=85.76 E-value=47 Score=37.85 Aligned_cols=139 Identities=23% Similarity=0.266 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 011939 316 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 395 (474)
Q Consensus 316 KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEV 395 (474)
|+.++...-+-.+..+|+..+...-+.+.. |-. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~---l~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESV---LKS-AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---hhh-hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344455555555556665555444332222 111 2222333333333455555666677888888888899999999
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhh-hhhhhHhhhhhhhhh---HHHHHHHHHHHHHHhhhc
Q 011939 396 EELKRESAIALEEVEKEREMIQVADVLREERA-QIKLSEAKYQLEEKN---AAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 396 e~LKres~k~reE~EeER~MLqmAEvWREERV-QMKL~eAk~~lEeK~---s~ldkL~~elE~FL~sk~ 460 (474)
..|+.+...+.+++.+-..+ +.+.|.+-+. |-.|.++...|-+++ .+--+|.++|..+...-+
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTRE--VQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 99998887776654443333 5577888777 456778888888888 788889999887766533
No 50
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.70 E-value=59 Score=37.51 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred ccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH---------
Q 011939 237 LKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA--------- 307 (474)
Q Consensus 237 ~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla--------- 307 (474)
+++--+++..+..++.-+++.|..+.+++ +-|--+..-|-+-...++.+.+.+.....++.++++.+-
T Consensus 348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~---~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl 424 (716)
T KOG4593|consen 348 LKNKNSTVTSPARGLERARQLLKEELKQV---AGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRL 424 (716)
T ss_pred hccccccccCcccchHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH----------HHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011939 308 EEKAAWKNKEREVVEAAIESIA----------GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVI 377 (474)
Q Consensus 308 EEK~awKsKE~eki~aai~slk----------~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRell 377 (474)
.+..---.++.|.+++.|+.+. +++..+=..+++. +.+|..++.+..+.+...-+++..-|+.++++
T Consensus 425 ~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~---~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~ 501 (716)
T KOG4593|consen 425 AEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKR---LEKLEHELKDLQSQLSSREQSLLFQREESELL 501 (716)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHh
Q 011939 378 EQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSR 457 (474)
Q Consensus 378 E~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~ 457 (474)
-+--+.+.+++...+.|-..|+-..+.-.-+.+.+-..-.+ |||..-=+=-+-..|-..+..|++|+++...
T Consensus 502 ~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rV--------l~~~~npt~~~~~~~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 502 REKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRV--------LHMSTNPTSKARQIKKNRLEELQAELERLKE 573 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccce--------eeecCCchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCcc-cch
Q 011939 458 NQKGKRKR-TQF 468 (474)
Q Consensus 458 sk~~~~~~-~~~ 468 (474)
--.+-..+ +++
T Consensus 574 ~l~~le~~~~~~ 585 (716)
T KOG4593|consen 574 RLTALEGDKMQF 585 (716)
T ss_pred HHHHHhccCCcc
No 51
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.77 E-value=34 Score=32.08 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH--------HHHHh
Q 011939 269 SLVSALHAELERAR-LQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV--------ERKLR 339 (474)
Q Consensus 269 SlvsaLk~EL~~AR-~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~--------ERK~R 339 (474)
+-++.|+.|+...+ ..+..|..+...-+.+++.|-.+|.+|- .++++ +++-+++. .....
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei--------~~l~a---~~klD~n~eK~~~r~e~~~~~ 126 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEI--------NKLRA---EVKLDLNLEKGRIREEQAKQE 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---HHHHHHHHhHHHHHHHHHHHH
Confidence 34556666665443 5566666666666667777666666652 22222 23333332 23455
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHh
Q 011939 340 RRFESLNKKLGKELAETKHSLLKAVK 365 (474)
Q Consensus 340 rr~E~lN~KL~~ELaE~Kss~~~alk 365 (474)
.++..+|.|+..|++.++..+....-
T Consensus 127 ~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 127 LKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999988887665433
No 52
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.15 E-value=91 Score=36.33 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=33.3
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHh
Q 011939 381 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADV 421 (474)
Q Consensus 381 CDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEv 421 (474)
|-++...|...+.+|...+.++.+.+.|||.=..||+-+|.
T Consensus 543 ~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~ 583 (775)
T PF10174_consen 543 NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN 583 (775)
T ss_pred CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888889999999999999888888888887774
No 53
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.56 E-value=44 Score=32.18 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHH
Q 011939 380 VCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQ 451 (474)
Q Consensus 380 vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~e 451 (474)
=|+.|-..|...+.+++..+.+....++.++.-+..|. +-.=..+..+..+.+....+.+....+..+...
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555 222222334444444444444444444443333
No 54
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.26 E-value=45 Score=32.10 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 011939 319 EVVEAAIESIAGELEVER 336 (474)
Q Consensus 319 eki~aai~slk~ELe~ER 336 (474)
+.++..|+.++.+++..|
T Consensus 73 ~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKR 90 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444555544443
No 55
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.67 E-value=57 Score=32.84 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=15.5
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 430 KLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 430 KL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
++.+++..+.+-...++.+..+++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666654
No 56
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.60 E-value=47 Score=31.92 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc----------------hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSD----------------QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 331 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~----------------~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~E 331 (474)
.-||..|++.+.+-+.++.+|++-..+. -.+|+.++.+|.||+. ++ +.+...-.-+++.
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~---~~L~qvN~lLReQ 89 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RS---EELAQVNALLREQ 89 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hH---HHHHHHHHHHHHH
Confidence 3689999999999999999998866322 2578889999999974 33 3334444556777
Q ss_pred hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011939 332 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK 371 (474)
Q Consensus 332 Le~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ER 371 (474)
||..+ ..|..|..||.-+...+..+..+|+...
T Consensus 90 LEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 90 LEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655 4678888888888888887777776543
No 57
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.23 E-value=63 Score=33.29 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhH
Q 011939 364 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNA 443 (474)
Q Consensus 364 lkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s 443 (474)
..|+-+---++.-||.+|.||-+.....+.|...+-++-...|.| + .+..|.-|.|-...+++...
T Consensus 63 ~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~e-------l-------~~kFq~~L~dIq~~~ee~~~ 128 (309)
T PF09728_consen 63 QSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKE-------L-------SEKFQATLKDIQAQMEEQSE 128 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHhccc
Confidence 334445556788999999999999877766655544443333333 2 24556666666665555543
Q ss_pred H
Q 011939 444 A 444 (474)
Q Consensus 444 ~ 444 (474)
.
T Consensus 129 ~ 129 (309)
T PF09728_consen 129 R 129 (309)
T ss_pred h
Confidence 3
No 58
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.08 E-value=1.2e+02 Score=36.38 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=66.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939 311 AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 390 (474)
Q Consensus 311 ~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~e 390 (474)
..||+| |-+.+-+|..||-++|+.-+.+-..-.++..||+|.--++.=+. =.+++.|+=.|-|-.++.-
T Consensus 268 qEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaT-------ldKEmAEERaesLQ~eve~ 336 (1243)
T KOG0971|consen 268 QEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMAT-------LDKEMAEERAESLQQEVEA 336 (1243)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHH
Confidence 346664 55566789999999999999999999999999999877654433 2345666667777777777
Q ss_pred cHHHHHHHHHHhHHHHHHHHH
Q 011939 391 DKSEVEELKRESAIALEEVEK 411 (474)
Q Consensus 391 dkaEVe~LKres~k~reE~Ee 411 (474)
.+..|++|--+.+-+..|+++
T Consensus 337 lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777776666666666653
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.69 E-value=1.3e+02 Score=36.25 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH---HHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLM---KCFAEEKAAWKNKEREVVEAAIESIAGELEVE 335 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~---KqlaEEK~awKsKE~eki~aai~slk~ELe~E 335 (474)
+++...+++.++..+.++..+.+..+.++..+. .++..+...++....+.+...+..+..+|..-
T Consensus 630 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 697 (1201)
T PF12128_consen 630 LKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQL 697 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554443 22333344455555555666666665555443
No 60
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.22 E-value=0.37 Score=55.09 Aligned_cols=143 Identities=22% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHH-HHHHhhh--hhHHHHHHHH
Q 011939 249 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE-EKAAWKN--KEREVVEAAI 325 (474)
Q Consensus 249 ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaE-EK~awKs--KE~eki~aai 325 (474)
+|=-..+..-.++|..--.+.-+..|..||..-|.++.+|+..+......|..|--+|.+ |-.+.++ +.--++.+-|
T Consensus 673 eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri 752 (859)
T PF01576_consen 673 ELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARI 752 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHH
Confidence 344445555566777777888899999999999999999999999999999999888876 3334444 5666788889
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL 398 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~L 398 (474)
..|-.+|+.|.+-+..+...++|+-+=|.|+-. .+|.+++.-.-+-++||.|-.-|..||..+++.
T Consensus 753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~-------q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 753 RELEEELESEQRRRAEAQKQLRKLERRVKELQF-------QVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999999999999887666433 578899999999999999999999998888754
No 61
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.22 E-value=1.4e+02 Score=37.97 Aligned_cols=129 Identities=26% Similarity=0.389 Sum_probs=66.8
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939 303 MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD 382 (474)
Q Consensus 303 ~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCD 382 (474)
++.+.+|---||.+-++-+...=+.=..++ +++.+.+.+|-.||.+.+..+.-+-+++..=+ +-+-.--|
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k~k~~d~~~~-------~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld 1349 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEKYKDSDKNDY-------EKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLD 1349 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 456667777777766665444222111122 12233555555555554444444444444333 33334445
Q ss_pred HHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhh-hhhhHhhhhhhhhh-----------------HH
Q 011939 383 ELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQ-IKLSEAKYQLEEKN-----------------AA 444 (474)
Q Consensus 383 ELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQ-MKL~eAk~~lEeK~-----------------s~ 444 (474)
+|-..|.+...+|..++.- --.+|..|.|.+-| |.|.+++-+.+... ++
T Consensus 1350 ~l~~e~~~lt~~~~ql~~~-------------~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e 1416 (1822)
T KOG4674|consen 1350 ELNNEKANLTKELEQLEDL-------------KTRLAAALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEE 1416 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555555555544422 12377888888888 77776664433222 56
Q ss_pred HHHHHHHHHH
Q 011939 445 VDKLRSQLEA 454 (474)
Q Consensus 445 ldkL~~elE~ 454 (474)
+..|.-+|+.
T Consensus 1417 ~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1417 LESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 62
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.19 E-value=92 Score=36.07 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=88.0
Q ss_pred ccccccccccccchhchH----HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 011939 231 VGVKTRLKDVSNALTTSK----ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF 306 (474)
Q Consensus 231 ~~~k~r~~e~~~~L~TS~----ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql 306 (474)
.|++...-.+++.+.|.. .|..++++--.+.-|+++..++......+.+-.+.+|=.|..=--.-+ .||
T Consensus 534 ~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKR-------EQI 606 (717)
T PF09730_consen 534 SDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKR-------EQI 606 (717)
T ss_pred chhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHH-------HHH
Confidence 367777777777777764 455555544333344444333333333333333333333322222212 244
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 011939 307 AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELAR 386 (474)
Q Consensus 307 aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 386 (474)
|-=|.+-|+--+ ...-||-.||...|.|+.+ -.|.+ .||-+||.-.|-- .-..--+|-=||.
T Consensus 607 aTLRTVLKANKq-TAEvALanLKsKYE~EK~~--v~etm-~kLRnELK~LKED--------------AATFsSlRamFa~ 668 (717)
T PF09730_consen 607 ATLRTVLKANKQ-TAEVALANLKSKYENEKAM--VSETM-MKLRNELKALKED--------------AATFSSLRAMFAA 668 (717)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh--HHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 444555555444 6678899999999999876 34444 4677776543322 2223334555666
Q ss_pred hhcccHHHHHHHHHHhHHHHHHHHHhHH----HHHHh
Q 011939 387 DINDDKSEVEELKRESAIALEEVEKERE----MIQVA 419 (474)
Q Consensus 387 eI~edkaEVe~LKres~k~reE~EeER~----MLqmA 419 (474)
.-.+|-.+|++|.|+... .|+|++ .|+||
T Consensus 669 RCdEYvtQldemqrqL~a----AEdEKKTLNsLLRmA 701 (717)
T PF09730_consen 669 RCDEYVTQLDEMQRQLAA----AEDEKKTLNSLLRMA 701 (717)
T ss_pred HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence 666677788888887664 455655 45665
No 63
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.96 E-value=61 Score=36.98 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=29.8
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 011939 233 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHA 276 (474)
Q Consensus 233 ~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~ 276 (474)
|...+=.+.-.|++...---..+.=|+..+.|.-+ +|..|+++
T Consensus 311 f~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RD-ALAAA~kA 353 (652)
T COG2433 311 FNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERD-ALAAAYKA 353 (652)
T ss_pred cCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHH-HHHHHHHH
Confidence 66677777777887765554456678889988754 55666655
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.63 E-value=32 Score=31.02 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=27.9
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011939 246 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 293 (474)
Q Consensus 246 TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~ 293 (474)
+......|+|=||+|.-++-.++..-..|...+..-++.+..|.....
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~ 76 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVE 76 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 446677888888866666555555555555555544444444444433
No 65
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=80.33 E-value=25 Score=38.89 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhc
Q 011939 279 ERARLQVNQLIQEQRSD 295 (474)
Q Consensus 279 ~~AR~rI~eL~~E~~s~ 295 (474)
..-+..|+||+.|++.+
T Consensus 87 ~~l~~Kl~eLE~e~k~d 103 (508)
T PF00901_consen 87 QGLQRKLKELEDEQKED 103 (508)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 45788888888888754
No 66
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.55 E-value=45 Score=36.74 Aligned_cols=98 Identities=24% Similarity=0.264 Sum_probs=54.0
Q ss_pred HHHHHHHHHhHHHH-HHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHH-------------hh
Q 011939 323 AAIESIAGELEVER-KLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-RVVIEQVCDELA-------------RD 387 (474)
Q Consensus 323 aai~slk~ELe~ER-K~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa-RellE~vCDELA-------------ke 387 (474)
|-+.++.++|+.|+ |+=.++|.+--+|..|-.. +--...+|.-.++|+++ -+|||++-.||- ++
T Consensus 321 arlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rg 399 (502)
T KOG0982|consen 321 ARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRG 399 (502)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 34445555555555 4455555555555444322 22233333445555544 345565555441 11
Q ss_pred -----hcccHHHHHHHHHHhHHHHHHHHHhHHH------HHHhHhh
Q 011939 388 -----INDDKSEVEELKRESAIALEEVEKEREM------IQVADVL 422 (474)
Q Consensus 388 -----I~edkaEVe~LKres~k~reE~EeER~M------LqmAEvW 422 (474)
.-+.+.||..||+++-++. |..+|+.| +|++--|
T Consensus 400 rsSaRe~eleqevkrLrq~nr~l~-eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 400 RSSAREIELEQEVKRLRQPNRILS-EQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred chhHHHHHHHHHHHHhccccchhh-hhhhhhhhhhhhHHHHHHHHH
Confidence 2357789999999988775 66677765 4666666
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.53 E-value=64 Score=31.48 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=84.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhH
Q 011939 265 SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRF 342 (474)
Q Consensus 265 ~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~ 342 (474)
..+-.-|..|...|..|.....+...-..-....+..+-..| +++| -+.+..-|..|..+|..=...-+.+
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR-------~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER-------AEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhchhHHHHHHHHHHHHHHHHHh
Confidence 344445667777777777777766665554444444444444 3344 3445555556666665555555555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 011939 343 ESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK 411 (474)
Q Consensus 343 E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee 411 (474)
|.--.+...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+..|++.
T Consensus 161 E~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 161 EASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333333333333333333334456788889999999999999999988888888877754
No 68
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=79.23 E-value=31 Score=33.81 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011939 321 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL 384 (474)
Q Consensus 321 i~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL 384 (474)
|..-|..+..+++..||. ...-+.|+.+++.++-.++.+ ++..-+..|+|+
T Consensus 91 ~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leK----------AK~~Y~~~c~e~ 141 (234)
T cd07652 91 MSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEK----------AKARYDSLADDL 141 (234)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 444455666777766654 677788999998888777655 455556677777
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.22 E-value=1.7e+02 Score=36.23 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhH
Q 011939 377 IEQVCDELARDINDDKSEVEELKRESA 403 (474)
Q Consensus 377 lE~vCDELAkeI~edkaEVe~LKres~ 403 (474)
.|....--+..|++.+.-|++||.+..
T Consensus 1610 aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1610 AEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444556777777777776654
No 70
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.03 E-value=1.7e+02 Score=36.46 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=4.5
Q ss_pred CCCCCCCCC
Q 011939 159 GSLPPHLSD 167 (474)
Q Consensus 159 ~~l~~~l~d 167 (474)
|.+|.+|..
T Consensus 182 G~f~~~L~a 190 (1486)
T PRK04863 182 GIIPRRLRS 190 (1486)
T ss_pred CCchhhhhc
Confidence 555555443
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.44 E-value=1e+02 Score=35.41 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=16.2
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 011939 335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD 368 (474)
Q Consensus 335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE 368 (474)
||+..+.++.++.+| -..+.++.++.+-++
T Consensus 634 Er~~~~EL~~~~~~l----~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 634 EREFKKELERMKDQL----QDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 677777777666654 223444444443333
No 72
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.10 E-value=41 Score=38.46 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 350 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~ 350 (474)
+.+|+.||++--.+|..|+++. |+|.|+|++=-++-+.-----...-+-.++.-++.|.-.-+.+-..-
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~---- 402 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTIS---- 402 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHH----
Confidence 4677777777777777776654 89999999866554432222222345566777777766555443222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK 430 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMK 430 (474)
++.+-+-++.- -+|.=+.-+..|.+|.-.-+..+-|+.-+. -.|+.|-++.+++=||-+
T Consensus 403 -~~~~~~~~~s~-------~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~Q-------------A~M~E~~Dt~~~~dV~~~ 461 (852)
T KOG4787|consen 403 -ELERKNLELTT-------QVKQLETKVTPKPNFVVPSGTTTTELRKEQ-------------AQMNELKDTVFKSDVQKV 461 (852)
T ss_pred -HHHHhcccHHH-------HHHHHhhccccchhhcCCCcchHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 22333333333 344445678899999877776666554222 224445556666555543
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=77.60 E-value=1.9e+02 Score=35.88 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhh
Q 011939 357 KHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKY 436 (474)
Q Consensus 357 Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~ 436 (474)
|.++..|-+.++.-.+.-++.+++-..=+.|...-++..|.|+.+..++..+.. ++|=.|-+ ++-+..+-.-
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~--~kl~~l~d------Le~~y~~~~~ 1724 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN--EKLDRLKD------LELEYLRNEQ 1724 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------HHHHHhhhhH
Confidence 334444444455444444555555555555555556666677776666654321 11111222 2334455556
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 437 QLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 437 ~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
+|+.|-++|..|..+||..|..-.
T Consensus 1725 ~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 789999999999999999987644
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.96 E-value=1.2e+02 Score=33.33 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 370 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~E 370 (474)
-+.|...|+.|-+-|+.|-..++.++....++...|..++........+++.=
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554444444444444444433
No 75
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.82 E-value=1.3e+02 Score=33.52 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=8.3
Q ss_pred eeeeccccCCCCCCCcccc
Q 011939 40 AILIGKRGGGGGSATPVPT 58 (474)
Q Consensus 40 ailVGKRg~~gg~sTP~pt 58 (474)
.+++|..| .|=||..-.
T Consensus 31 ~~i~G~Ng--~GKttll~a 47 (650)
T TIGR03185 31 ILIGGLNG--AGKTTLLDA 47 (650)
T ss_pred EEEECCCC--CCHHHHHHH
Confidence 34566666 333454433
No 76
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.80 E-value=75 Score=30.76 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 346 NKKLGKELAETKH---SLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 346 N~KL~~ELaE~Ks---s~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
|++|...|..+.. .+.+-+++|++.+.+=.-+..--..+-++|.+.+-|-+.|.+...+
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443332 2334444455555544444444555555666666666666555443
No 77
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.69 E-value=56 Score=29.27 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRF 342 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~ 342 (474)
+..|..|+..+...+..........+.+++...+.. +.++...----|-..-..|..++.++..-+.....+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINEL 78 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888877777777776655433 223322222223333444666666666544433333
No 78
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.22 E-value=1.9 Score=37.23 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011939 296 QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV 375 (474)
Q Consensus 296 ~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRe 375 (474)
..+||.|+..|+++-..-. ++.......|..+..+|.. .+..+..|-..|..++......+.+-+ ..+..
T Consensus 20 ~~eVD~fl~~l~~~~~~l~-~e~~~L~~~~~~l~~~l~~-------~~~~~~~l~~~l~~aq~~a~~~~~~A~--~eA~~ 89 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQ-RENAELKEEIEELQAQLEE-------LREEEESLQRALIQAQETADEIKAEAE--EEAEE 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh-------hhhHHHHHHHhhhhhhhhHHHHHHHHH--HHHHH
Confidence 4578888888877743222 2222233333333333322 122223333333333333333333322 22555
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 011939 376 VIEQVCDELARDINDDKSEVEELKRESAIALEE 408 (474)
Q Consensus 376 llE~vCDELAkeI~edkaEVe~LKres~k~reE 408 (474)
++++.=.+-..-|.+.+++++.|..+...+..+
T Consensus 90 i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~ 122 (131)
T PF05103_consen 90 IIEEAQKEAEEIIEEARAEAERLREEIEELKRQ 122 (131)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444555555555555554444433
No 79
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=76.15 E-value=8.3 Score=34.02 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=54.4
Q ss_pred HHhHHHHHHhhhHHHHhHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 011939 330 GELEVERKLRRRFESLNKKLGKELAETKHSL-LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 397 (474)
Q Consensus 330 ~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~-~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~ 397 (474)
.+|..|+..|..+|....++-.||-+.-.++ ..|=+=...+|+.+..+|.=-+.|-+.+.+-+..++.
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999987766 6666667888988888888888888777765544443
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.07 E-value=66 Score=29.73 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 011939 276 AELERARLQVNQLIQE 291 (474)
Q Consensus 276 ~EL~~AR~rI~eL~~E 291 (474)
.|+..++.++.+|.+|
T Consensus 81 ~e~~~~~~~l~~l~~e 96 (191)
T PF04156_consen 81 GELSELQQQLQQLQEE 96 (191)
T ss_pred hhHHhHHHHHHHHHHH
Confidence 3444444444444433
No 81
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=75.89 E-value=83 Score=30.80 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=40.5
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHH---HHHHHHHHHhHHHHHHhhhH-HHHhHHHHHHHHHHH
Q 011939 298 EISYLMKCFAEEKAAWKNKEREVVE---AAIESIAGELEVERKLRRRF-ESLNKKLGKELAETK 357 (474)
Q Consensus 298 eie~l~KqlaEEK~awKsKE~eki~---aai~slk~ELe~ERK~Rrr~-E~lN~KL~~ELaE~K 357 (474)
.+..|-+.|..|+..++..|..++. ..|..|...|+.|-|-|-.+ +.+.+.+-..+..+.
T Consensus 13 ~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~ 76 (247)
T PF06705_consen 13 RFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ 76 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899888888888765 45777888888887766433 234444444444433
No 82
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.52 E-value=2e+02 Score=34.98 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011939 350 GKELAETKHSLLKAVKDLDTEKRARVVIEQ 379 (474)
Q Consensus 350 ~~ELaE~Kss~~~alkelE~ERKaRellE~ 379 (474)
.+|..++|.-+..+-.++.+-++....+|.
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444443
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.29 E-value=1.5e+02 Score=33.50 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=15.3
Q ss_pred HhhhccCCCcccHHHHHHHHhhhcCCCC
Q 011939 94 QQQHQHSQQPVSARKLAATLWEMNEMPS 121 (474)
Q Consensus 94 ~~~~~~~~~~vSARKLaAtLWE~n~~p~ 121 (474)
||.|+-... .--|+| -.|=|-.+|.
T Consensus 86 yq~fLYp~e-~~~R~l--l~fLiekLP~ 110 (594)
T PF05667_consen 86 YQTFLYPNE-KDLRRL--LMFLIEKLPR 110 (594)
T ss_pred chhhccCCh-HHHHHH--HHHHHHHCCc
Confidence 666775443 446777 4566777763
No 84
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.27 E-value=1.4e+02 Score=33.00 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-----HHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 011939 266 SSMSLVSALHAELERARLQVNQL-----IQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR 340 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL-----~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rr 340 (474)
.--+-|..|+.+|..+...|..| ...-......|+.|-..|.-|..|.+.=++ ....=-+.-.
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek------------~~~~l~~~l~ 320 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEK------------NSDTLPDFLE 320 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHH
Confidence 33466888888888866666555 344455566788888888888877554222 1111122223
Q ss_pred hHHHHhHHHHHHHHHHHHH
Q 011939 341 RFESLNKKLGKELAETKHS 359 (474)
Q Consensus 341 r~E~lN~KL~~ELaE~Kss 359 (474)
+++.-|..|..||..++.+
T Consensus 321 ~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555
No 85
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=75.20 E-value=0.93 Score=51.95 Aligned_cols=93 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh--hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN--KEREVVEAAIESIAGELEVERKLRRRFESLNKK 348 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs--KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~K 348 (474)
|.-|..+|+.+++.+.+|++-++...+.+..+..++.+....+-. ++.....+-|..|+.+|+.-.-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344667777777777777777776666666666555544433222 233445666788888888888888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011939 349 LGKELAETKHSLLKA 363 (474)
Q Consensus 349 L~~ELaE~Kss~~~a 363 (474)
|..||.++...+..+
T Consensus 438 L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 438 LQDELEDLTSQLDDA 452 (859)
T ss_dssp ---------------
T ss_pred HHHhhccchhhhhhh
Confidence 999999887665543
No 86
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.84 E-value=29 Score=28.70 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 334 (474)
+.|.+|+.-||++-.+|.-...+...-..|=+.++.++.+ ..-+-+++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988888888777777788777776 344567777777777777653
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.38 E-value=1.4e+02 Score=32.74 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=7.3
Q ss_pred cHHHHHHHHhh
Q 011939 105 SARKLAATLWE 115 (474)
Q Consensus 105 SARKLaAtLWE 115 (474)
+|++++..|+.
T Consensus 66 ~akr~veel~~ 76 (522)
T PF05701_consen 66 SAKRTVEELKL 76 (522)
T ss_pred HHHHHHHHHHH
Confidence 46777777665
No 88
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.22 E-value=1.9e+02 Score=34.19 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHH--HhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHH
Q 011939 370 EKRARVVIEQVCDELARDINDDKSEVEELKR--ESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDK 447 (474)
Q Consensus 370 ERKaRellE~vCDELAkeI~edkaEVe~LKr--es~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldk 447 (474)
|.+-|.|. .-|.+-..++.+..-|--.|-- |..++. |++++ --+|-+.|+| +|..-|..||||....
T Consensus 1093 enqmrdl~-~qce~ni~EL~qlQNEKchlLvEhEtqklK-elde~--h~~~~~~w~e-----~l~~rk~~lee~~~~~-- 1161 (1187)
T KOG0579|consen 1093 ENQMRDLK-EQCEENIIELDQLQNEKCHLLVEHETQKLK-ELDEK--HHEMRELWQE-----NLIARKTVLEEKFEDE-- 1161 (1187)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHH-----hhhhhhhHHHHHHHHH--
Confidence 33434333 3476666666655555433332 333442 44433 3467789975 7888889999986543
Q ss_pred HHHHHHHHHhh
Q 011939 448 LRSQLEAFSRN 458 (474)
Q Consensus 448 L~~elE~FL~s 458 (474)
-.++|.|..-
T Consensus 1162 -~reqE~f~~m 1171 (1187)
T KOG0579|consen 1162 -LREQEVFYGM 1171 (1187)
T ss_pred -HHHHHHHhcc
Confidence 4588999864
No 89
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.02 E-value=57 Score=37.59 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=52.7
Q ss_pred ccccchhch------HHHHHHHHhhcCCCCCCCcchhHHHHH---HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH
Q 011939 239 DVSNALTTS------KELLKIINRMWGQEDRPSSSMSLVSAL---HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 309 (474)
Q Consensus 239 e~~~~L~TS------~ELlkVlnriw~leeq~~s~~SlvsaL---k~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE 309 (474)
..||+|... .+++.--..+.+ ++...---+|..| +.++++.+..+.++.+|-...+.+++...+++.++
T Consensus 486 g~S~a~~iA~~~Glp~~ii~~A~~~~~--~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 486 GKSNAFEIAKRLGLPENIIEEAKKLIG--EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred CCcHHHHHHHHhCcCHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655 555655556652 2322222344444 44555555566666666666666666666666666
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhH
Q 011939 310 KAAWKNKEREVVEAAIESIAGELE 333 (474)
Q Consensus 310 K~awKsKE~eki~aai~slk~ELe 333 (474)
+.....+.+++...+|..++.|.+
T Consensus 564 ~~~~~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 564 EDKLLEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665543
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.93 E-value=72 Score=37.67 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=70.7
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH-----
Q 011939 233 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA----- 307 (474)
Q Consensus 233 ~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla----- 307 (474)
+-|||.|+...++|-++.+.+++.-- -..||-|+-|+++|..-+.-...|..|++--.+.+...--...
T Consensus 456 ls~kl~Dvr~~~tt~kt~ie~~~~q~------e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~ 529 (1118)
T KOG1029|consen 456 LSGKLQDVRVDITTQKTEIEEVTKQR------ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQR 529 (1118)
T ss_pred HhhhhhhheeccchHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchH
Confidence 34688999999999988877776543 3567778888888888888888888887754444433211111
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhh-hHHHHhHHH
Q 011939 308 EEKAAWKNKEREVVEAAIESIAGELEVERKLRR-RFESLNKKL 349 (474)
Q Consensus 308 EEK~awKsKE~eki~aai~slk~ELe~ERK~Rr-r~E~lN~KL 349 (474)
-.-+-....+.|-|+.+|.+--+||+.|..... .++++|--|
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 111222344567788888888888887765432 344444433
No 91
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=73.78 E-value=38 Score=30.80 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhH-------HHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHH
Q 011939 374 RVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKER-------EMIQVADVLREERAQIKLSEAKYQLEEKNAAVD 446 (474)
Q Consensus 374 RellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER-------~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ld 446 (474)
-.-|.+.|++|...|++...=|..+-.-....-.++|.|+ .+|.....=|+ -+.......+.||...|+
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~----~~~q~lq~~I~Ek~~eLE 97 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQRE----AQQQQLQALIAEKKMELE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Confidence 3456778999999999888888877776666555666554 33333322222 233445677899999999
Q ss_pred HHHHHHHHHHh
Q 011939 447 KLRSQLEAFSR 457 (474)
Q Consensus 447 kL~~elE~FL~ 457 (474)
+|+.|.++...
T Consensus 98 Rl~~E~~sL~k 108 (120)
T PF14931_consen 98 RLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.48 E-value=1.1e+02 Score=31.25 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011939 321 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 373 (474)
Q Consensus 321 i~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa 373 (474)
+.+.-..|..|+...+..-..++.... .||..++..+...-.+++.-|+.
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555544443443332 44444444444444444433333
No 93
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.46 E-value=1.7e+02 Score=33.27 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 011939 353 LAETKHSLLKAVKDLDTEKRAR-VVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 410 (474)
Q Consensus 353 LaE~Kss~~~alkelE~ERKaR-ellE~vCDELAkeI~edkaEVe~LKres~k~reE~E 410 (474)
+..+..-+..++.+.+.||... .-+..|-|..++-.....+.++.+|-...+.++|+.
T Consensus 519 v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~~~ei~ 577 (581)
T KOG0995|consen 519 VKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHKECEEIE 577 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888888887 778888888888888888888988888888877764
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=73.28 E-value=1.3e+02 Score=31.70 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=96.0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHH---HHHHHHHHHHHHhHHH
Q 011939 259 GQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE---VVEAAIESIAGELEVE 335 (474)
Q Consensus 259 ~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~e---ki~aai~slk~ELe~E 335 (474)
+|.+++..=.--+.+|..+|..+..+|.+|.+|-.. +.++=++.-.-.||-..--+-.-. .....-..-..-|+.=
T Consensus 87 sLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 87 SLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-KDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 345555544566788999999999999999998764 333333333333322111110000 0000000000112222
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HHhhhcc---cHHHHHHH
Q 011939 336 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE--------------LARDIND---DKSEVEEL 398 (474)
Q Consensus 336 RK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDE--------------LAkeI~e---dkaEVe~L 398 (474)
++-=|.+|.-|..|-.|-+..+..... | |.+.+.||.+.+.+ ||+...+ ...||..|
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~----~--EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDT----Y--EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhh----c--cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666777777776665544432 2 44466666654444 4433222 22333333
Q ss_pred HHHhHHHHHH-----HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 399 KRESAIALEE-----VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 399 Kres~k~reE-----~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
..+.+....- +|.|-.-.|++.. --.|+.|..==..|.+||+.+-.|=.|-+.=|++-+
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~s---ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQAS---KESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3332221110 1223333333332 246677655556888999998888877777666543
No 95
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.89 E-value=1e+02 Score=32.20 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=15.4
Q ss_pred HhhhchhHHHHHHHHhHHHHH
Q 011939 291 EQRSDQSEISYLMKCFAEEKA 311 (474)
Q Consensus 291 E~~s~~~eie~l~KqlaEEK~ 311 (474)
..-....++.+++++|.+.|.
T Consensus 17 rr~~~~~e~~~l~~~f~elke 37 (291)
T KOG4466|consen 17 RRANEESEMSNLEKQFSELKE 37 (291)
T ss_pred hhhhhhhhhhhhhhhhhHHHH
Confidence 344456688899999998873
No 96
>PRK11637 AmiB activator; Provisional
Probab=72.67 E-value=1.3e+02 Score=31.64 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 011939 273 ALHAELERARLQVNQLIQEQR 293 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~ 293 (474)
.++.+|+..+.+|+++.++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 97
>PRK03918 chromosome segregation protein; Provisional
Probab=72.67 E-value=1.7e+02 Score=33.01 Aligned_cols=8 Identities=38% Similarity=1.012 Sum_probs=5.0
Q ss_pred eeeecccc
Q 011939 40 AILIGKRG 47 (474)
Q Consensus 40 ailVGKRg 47 (474)
.+++|..|
T Consensus 26 ~~i~G~nG 33 (880)
T PRK03918 26 NLIIGQNG 33 (880)
T ss_pred EEEEcCCC
Confidence 45677666
No 98
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=72.30 E-value=53 Score=37.80 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=58.9
Q ss_pred cccchhch------HHHHHHHHhhcCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 240 VSNALTTS------KELLKIINRMWGQEDRPS-SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 240 ~~~~L~TS------~ELlkVlnriw~leeq~~-s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
.||+|... .+++.--..+.+-.+... --+.=+...+.+++..+..+..+.+|-...+.+++...++|.+++..
T Consensus 482 ~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 482 ESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred CcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655 555555555542222211 12233344455666667777777777777777777777777777777
Q ss_pred hhhhhHHHHHHHHHHHHHHhHH
Q 011939 313 WKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 313 wKsKE~eki~aai~slk~ELe~ 334 (474)
+..+..++...+|..++.|++.
T Consensus 562 ~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 562 KKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766543
No 99
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.06 E-value=46 Score=35.81 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHH--------HhhhhhHHHHHHHHHHHHHHhHHHHHHhhh
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA--------AWKNKEREVVEAAIESIAGELEVERKLRRR 341 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~--------awKsKE~eki~aai~slk~ELe~ERK~Rrr 341 (474)
-|.+|+.+|+..+..+.++..+.......+.. +..+.+ .. .|....-..+.+.++.+.+++..-+...+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKF-LEDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888888888777776643 344443 11 111223456667777777776555544444
Q ss_pred HHHHhHHHHHHHHH
Q 011939 342 FESLNKKLGKELAE 355 (474)
Q Consensus 342 ~E~lN~KL~~ELaE 355 (474)
++.--++|.++|.+
T Consensus 150 ~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 150 AERRIRELEKQLSE 163 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 44333334334333
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.60 E-value=2.7e+02 Score=34.86 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=4.7
Q ss_pred chHHHHHHHHhh
Q 011939 246 TSKELLKIINRM 257 (474)
Q Consensus 246 TS~ELlkVlnri 257 (474)
+..|...++-.+
T Consensus 277 ~~eERR~liEEA 288 (1486)
T PRK04863 277 HANERRVHLEEA 288 (1486)
T ss_pred CHHHHHHHHHHH
Confidence 334444443333
No 101
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=69.94 E-value=1.6e+02 Score=31.40 Aligned_cols=33 Identities=6% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939 358 HSLLKAVKDLDTEKRARVVIEQVCDELARDIND 390 (474)
Q Consensus 358 ss~~~alkelE~ERKaRellE~vCDELAkeI~e 390 (474)
.+..++|.|+++.|..+.-|+.+-++++.++..
T Consensus 346 ~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 346 SAYDSLLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777666666666654
No 102
>PRK14154 heat shock protein GrpE; Provisional
Probab=69.64 E-value=94 Score=30.84 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=51.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 011939 264 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 333 (474)
Q Consensus 264 ~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 333 (474)
|-+..+-+..|..+|+..+.++.+|...-.....+++.+.|....|+...+.---+++-..+-.+-+.|+
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLI 116 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3455677899999999999999999888888888899988888888765555444444444444444443
No 103
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.42 E-value=1.2e+02 Score=29.94 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRA 373 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKa 373 (474)
-+..+|..+..||+...+-||+-|..
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 47788999999999999999876544
No 104
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.06 E-value=1.2e+02 Score=33.57 Aligned_cols=129 Identities=21% Similarity=0.210 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHh
Q 011939 271 VSALHAELERARLQVNQLIQEQR----SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLN 346 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~----s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN 346 (474)
+.-|+++|+-|++.+.-..+=-- +....|+-..++-.||-++-+.-..+-+...=-.+-.-|+.||..-+. --
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq---~~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQ---NE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHH---HH
Confidence 66788888888887654433211 112245666666666665555544444444444444557777655443 34
Q ss_pred HHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 011939 347 KKLGKELAETKHSLLK--AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 405 (474)
Q Consensus 347 ~KL~~ELaE~Kss~~~--alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~ 405 (474)
.++-+|+...+.-++. +.-+||+|++-+.=.++--.|+.. -.+.||.+||.+..+.
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~~a 174 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLAKA 174 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHhH
Confidence 6888899988888888 888999998766544444444443 3566677777665554
No 105
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.83 E-value=2.8e+02 Score=33.84 Aligned_cols=105 Identities=13% Similarity=0.262 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHh------
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADV------ 421 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEv------ 421 (474)
+..++...++.-++..-.+++..++.|.....+-.++-..|.+-+.|+..++-+-..+.+| +++.-.+|+..
T Consensus 297 ~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~e--e~~~~~rl~~l~~~~~~ 374 (1200)
T KOG0964|consen 297 KISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDE--EKRLKKRLAKLEQKQRD 374 (1200)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhH--HHHHHHHHHHHHHHHHH
Confidence 3333343444445566667888888899888999999999999999999888776666543 34444455442
Q ss_pred ---------------hhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 422 ---------------LREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 422 ---------------WREERVQMKL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
=||.=+.--+.+-+..+.++...-+.|+.||++
T Consensus 375 l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~ 422 (1200)
T KOG0964|consen 375 LLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIED 422 (1200)
T ss_pred HHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 233335555666666666666666666666544
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.65 E-value=84 Score=30.82 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQE 291 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E 291 (474)
+....+..|+.||..+++++.++..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33455777888888887777776544
No 107
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.38 E-value=40 Score=27.88 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=10.5
Q ss_pred hhhcccHHHHHHHHHH
Q 011939 386 RDINDDKSEVEELKRE 401 (474)
Q Consensus 386 keI~edkaEVe~LKre 401 (474)
-+|.+.++|++.|+++
T Consensus 47 ~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 47 EENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667777777765
No 108
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=68.30 E-value=40 Score=37.55 Aligned_cols=57 Identities=32% Similarity=0.340 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK 348 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~K 348 (474)
-|+.-+|.||++-++...|+... -..|-+|+ ..-+++-..|-+|||+|.-++.-++|
T Consensus 511 llkva~dnar~qekQiq~Ek~EL-------kmd~lrer------------elreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 511 LLKVAIDNARAQEKQIQLEKTEL-------KMDFLRER------------ELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888877777666422 22222332 23345666677888888777665555
No 109
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.07 E-value=1.6e+02 Score=30.82 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 011939 365 KDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK 411 (474)
Q Consensus 365 kelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee 411 (474)
.+....+....-+-+=..+||.++.+|..++-.+-++.+.++.+.++
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade 211 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADE 211 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444555677888888877777777777766665443
No 110
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=68.02 E-value=53 Score=39.28 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=9.3
Q ss_pred cccHHHHHHHHhhhc
Q 011939 103 PVSARKLAATLWEMN 117 (474)
Q Consensus 103 ~vSARKLaAtLWE~n 117 (474)
+..+..|...+|.++
T Consensus 268 S~eL~dLI~~~L~~d 282 (1021)
T PTZ00266 268 SKELNILIKNLLNLS 282 (1021)
T ss_pred CHHHHHHHHHHhcCC
Confidence 344666777777665
No 111
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=67.91 E-value=83 Score=31.01 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=52.2
Q ss_pred HHHHHHHhhhchhHH---HHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHH
Q 011939 285 VNQLIQEQRSDQSEI---SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLL 361 (474)
Q Consensus 285 I~eL~~E~~s~~~ei---e~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~ 361 (474)
|.+|+.|++.....+ |+|.--+.- |+++ ++..||.|+.-.++.|.-|.|+...|.|-+.-.+
T Consensus 115 i~eLe~EKrkh~~~~aqgDD~t~lLEk--------EReR-------Lkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 115 IQELEEEKRKHAEDMAQGDDFTNLLEK--------ERER-------LKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888887543322 223322322 3333 7789999999999999999999999888777777
Q ss_pred HHHhHHHHHHH
Q 011939 362 KAVKDLDTEKR 372 (474)
Q Consensus 362 ~alkelE~ERK 372 (474)
.++--|-.|++
T Consensus 180 ~~~l~Lv~E~k 190 (192)
T PF09727_consen 180 SFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHh
Confidence 77777777765
No 112
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=67.34 E-value=2e+02 Score=33.48 Aligned_cols=95 Identities=25% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhh--------HHHHHHHHHHHHHHhH
Q 011939 262 DRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKE--------REVVEAAIESIAGELE 333 (474)
Q Consensus 262 eq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE--------~eki~aai~slk~ELe 333 (474)
+-+..+++.+++=. -+--|.+...|+-.+.+..=++.-|..|+..-+ -|-++ +.++-++= +-|.
T Consensus 92 es~~p~~~~~s~~~--~~~yQerLaRLe~dkesL~LQvsvLteqVeaQg--EKIrDLE~cie~kr~kLnatE----EmLQ 163 (861)
T KOG1899|consen 92 ESPSPSMSTVSCPE--YPEYQERLARLEMDKESLQLQVSVLTEQVEAQG--EKIRDLETCIEEKRNKLNATE----EMLQ 163 (861)
T ss_pred hccCCCCCCccCCc--chHHHHHHHHHhcchhhheehHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhchHH----HHHH
Confidence 44555556554322 223334444555555554444444444443321 01111 22222222 2345
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 011939 334 VERKLRRRFESLNKKLGKELAETKHSLLKAV 364 (474)
Q Consensus 334 ~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~al 364 (474)
+|=-.|.-+|+----|-.|+++.|.-+...-
T Consensus 164 qellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 164 QELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 5556677888888888999999988666533
No 113
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=67.19 E-value=2.5e+02 Score=32.65 Aligned_cols=11 Identities=27% Similarity=0.260 Sum_probs=5.1
Q ss_pred HHHHHHHHhhc
Q 011939 248 KELLKIINRMW 258 (474)
Q Consensus 248 ~ELlkVlnriw 258 (474)
.++.+.|+.++
T Consensus 504 ~~l~~~l~~~~ 514 (908)
T COG0419 504 EELEKELRELE 514 (908)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 114
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=67.19 E-value=1.1e+02 Score=28.62 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh-HHHHHH-hhhHHHHhHHH
Q 011939 296 QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-EVERKL-RRRFESLNKKL 349 (474)
Q Consensus 296 ~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL-e~ERK~-Rrr~E~lN~KL 349 (474)
+.||.+|+|.|.+-+--+-.+--..+...|..+.+.+ ..-..+ -.++..++.+|
T Consensus 20 qgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 20 QGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4589999999998887777777788888888888665 544444 34666666665
No 115
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.07 E-value=2e+02 Score=31.42 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 011939 275 HAELERARLQVNQLIQEQR 293 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E~~ 293 (474)
..-+.+|..+|..|..+..
T Consensus 250 ~~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELA 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 116
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=66.79 E-value=1.5e+02 Score=30.05 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.5
Q ss_pred HhHHHHHHhHhhh
Q 011939 411 KEREMIQVADVLR 423 (474)
Q Consensus 411 eER~MLqmAEvWR 423 (474)
+|+++..|.|.|.
T Consensus 215 eE~Ri~~l~e~~~ 227 (252)
T cd07675 215 DERRTVKLSECYR 227 (252)
T ss_pred HHHHHHHHHHHHH
Confidence 5778888888887
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.62 E-value=2e+02 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 371 KRARVVIEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 371 RKaRellE~vCDELAkeI~edkaEVe~LKre 401 (474)
-+.-.++-.|-.+++..|+.+++....|+..
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 146 VRLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666655544
No 118
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.56 E-value=1e+02 Score=28.03 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 308 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaE 308 (474)
|-|..+..|+...+.++..|.+++.....||-.|+....+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888889999999999998888888888776544
No 119
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.00 E-value=1e+02 Score=27.80 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL 345 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~l 345 (474)
..|.+|..|-.-.++-..+-..|....+....++++|-..+.-= .+++...-+.+..-...++.+.+.+..+
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL--------~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERL--------KEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666667777777777777777766555433 2233333333334444555555544444
Q ss_pred hHHH
Q 011939 346 NKKL 349 (474)
Q Consensus 346 N~KL 349 (474)
..++
T Consensus 107 ~~~~ 110 (151)
T PF11559_consen 107 EAKL 110 (151)
T ss_pred HHHH
Confidence 4333
No 120
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=65.97 E-value=93 Score=27.28 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 011939 316 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAET 356 (474)
Q Consensus 316 KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~ 356 (474)
.+..++..++.++.++|.+.++-|.++-..|+.|+.|+-+.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999998753
No 121
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=64.68 E-value=2.4e+02 Score=31.61 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=43.6
Q ss_pred cccccccCCCCCCCccccccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 011939 215 MEVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVN 286 (474)
Q Consensus 215 mev~~~~~~~tps~s~~~~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~ 286 (474)
|.+-.|..+..|..|-+ |.|++++..-|++-.|-+++++ ..-.|+.+|..|++-++
T Consensus 168 ~q~~d~~e~~~~kdSQl--kvrlqe~~~ll~~Rve~le~~S--------------al~~lq~~L~la~~~~~ 223 (554)
T KOG4677|consen 168 EQYRDYSEDWSPKDSQL--KVRLQEVRRLLKGRVESLERFS--------------ALRSLQDKLQLAEEAVS 223 (554)
T ss_pred hhHhhHhhhcccchhhH--HHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 44666667777777744 8899999999999999999984 56677888888887654
No 122
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=64.23 E-value=11 Score=39.86 Aligned_cols=55 Identities=31% Similarity=0.390 Sum_probs=45.7
Q ss_pred cccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011939 234 KTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQ 292 (474)
Q Consensus 234 k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~ 292 (474)
+.|+++++++|.. +.+=|.+..|..|--..|+||+.|+.||-.-+++...+..--
T Consensus 192 eerv~kAs~~L~~----yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m 246 (372)
T COG3524 192 EERVKKASNDLTD----YRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHhHHHH----HHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4478888888865 567789999999998999999999999999998887776543
No 123
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.19 E-value=2.2e+02 Score=33.65 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHH---------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRRFESLNKKLGK---------------ELAETKHSLLKAVKDLDTEKRARVVIEQVCD 382 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~---------------ELaE~Kss~~~alkelE~ERKaRellE~vCD 382 (474)
+--|.=|+|.|+.|-. .+|||+-.||..|-. ||.-.++--.-.-+.|..-.|.-++|-..-+
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 3445667788777765 588999999999954 2322222211222344555667788888888
Q ss_pred HHHhhhcccHHHHHHHHHHhHHHHHH-HHHhHHHHHHhHhhhHH
Q 011939 383 ELARDINDDKSEVEELKRESAIALEE-VEKEREMIQVADVLREE 425 (474)
Q Consensus 383 ELAkeI~edkaEVe~LKres~k~reE-~EeER~MLqmAEvWREE 425 (474)
||-|-|...+.| ..+..+. .|.|-.+|+--..|-.|
T Consensus 459 ellk~~e~q~~E-------nk~~~~~~~ekd~~l~~~kq~~d~e 495 (861)
T PF15254_consen 459 ELLKVIENQKEE-------NKRLRKMFQEKDQELLENKQQFDIE 495 (861)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888776554443 3334333 34555555555555443
No 124
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.60 E-value=94 Score=35.58 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhHH---HHhHHHHHHHHHHHHHHHHHHhHHHH
Q 011939 316 KEREVVEAAIESIAGELEVERKLRRRFE---SLNKKLGKELAETKHSLLKAVKDLDT 369 (474)
Q Consensus 316 KE~eki~aai~slk~ELe~ERK~Rrr~E---~lN~KL~~ELaE~Kss~~~alkelE~ 369 (474)
++-+++.+-+..++.+++.+-+.++..+ .-+.+|-++|.|-+.-....-..|+.
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445444444433333332 22333444444444444333333333
No 125
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=63.59 E-value=1.8e+02 Score=30.65 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHh
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLN 346 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN 346 (474)
.++-.++.+|.+|+.+|+|+++-.+..+..+...+-+- .+|+++ -+..| =-=+|++++.++
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~--------------QlqsE---N~LLrQQLddA~ 241 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLS--------------QLQSE---NMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHH---HHHHHHHHHHHH
Confidence 45778889999999999999988887777766655432 233322 11111 123566666666
Q ss_pred HHH-HHH--HHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhhhcccH
Q 011939 347 KKL-GKE--LAETKHSLLKAVKDLDTEKRARVV-IEQVCDELARDINDDK 392 (474)
Q Consensus 347 ~KL-~~E--LaE~Kss~~~alkelE~ERKaRel-lE~vCDELAkeI~edk 392 (474)
.|- .+| +.++.--|...++.|--|.....+ ||+=-.||..+....+
T Consensus 242 ~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 242 NKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 665 244 566666666666665555444433 5555455544444333
No 126
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.47 E-value=2.1e+02 Score=31.58 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhh
Q 011939 409 VEKEREMIQVADVLREERAQIKLSEAKYQLEEKN 442 (474)
Q Consensus 409 ~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~ 442 (474)
+|.+-.|+-+-|.-|+=|.+-.|++|..+|.-|-
T Consensus 107 ~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~ 140 (459)
T KOG0288|consen 107 AEFENAELALREMRRKMRIAERLAEALKDLGLKD 140 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 6777778877777788888888888877765543
No 127
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.86 E-value=2.1e+02 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRS 294 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s 294 (474)
+-+..|+..|..+++++..|.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777776653
No 128
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.57 E-value=2.6e+02 Score=32.47 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=11.7
Q ss_pred hhHHHHHHHHhHHHHHHhh
Q 011939 296 QSEISYLMKCFAEEKAAWK 314 (474)
Q Consensus 296 ~~eie~l~KqlaEEK~awK 314 (474)
..+++.|+..+.+++..+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 515 KEKLNELIASLEELERELE 533 (782)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3467777777776665443
No 129
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.28 E-value=1.6e+02 Score=28.67 Aligned_cols=119 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch-----------------hHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQ-----------------SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 333 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~-----------------~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 333 (474)
|.-|+.+|..++..+.+|..|.+.-+ .++..++.+..+|-..|+.+=... -..+=+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~-------q~~~r~ 86 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKS-------QEQERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 011939 334 VERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 410 (474)
Q Consensus 334 ~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~E 410 (474)
.|++++..-+.+.+ +...++.|+.--..+.|.| +++|...+...+++++.-.+....+--.++
T Consensus 87 ~~~klk~~~~el~k------------~~~~l~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 87 LERKLKDKDEELLK------------TKDELKHLKKLSEDKNLAE--REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.97 E-value=2.1e+02 Score=30.01 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=36.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHH
Q 011939 264 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK 310 (474)
Q Consensus 264 ~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK 310 (474)
|.++--+=.-|.++|+++..+.+.|+.+.+..+-|++.+-.++..-.
T Consensus 40 QegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~ 86 (333)
T KOG1853|consen 40 QEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQR 86 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667789999999999999999999888888777766655443
No 131
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=61.62 E-value=1.8e+02 Score=30.87 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhH-HHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER-EVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~-eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
-+...+..=+..|..++..|.............++.-|.|+-..-...+- ..+...+...+.-.+++.+.++.-+.-..
T Consensus 310 ~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~ 389 (432)
T smart00498 310 KFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRK 389 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666688888888888888888888888888888877543111111 34555555555555555444444455666
Q ss_pred HHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHH
Q 011939 348 KLGKELAETKHS-----LLKAVKDLDTEKRARVVIEQVCDEL 384 (474)
Q Consensus 348 KL~~ELaE~Kss-----~~~alkelE~ERKaRellE~vCDEL 384 (474)
++++|..+-... -...+.+...++....+|..||.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 390 QLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 666666654442 1245666777777788888888775
No 132
>PLN03188 kinesin-12 family protein; Provisional
Probab=60.97 E-value=4.2e+02 Score=33.10 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 011939 261 EDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQS 297 (474)
Q Consensus 261 eeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~ 297 (474)
.|-++--|+|.--|++||+-.|....+|..|-...|+
T Consensus 1057 ~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~ 1093 (1320)
T PLN03188 1057 TEAESKWISLAEELRTELDASRALAEKQKHELDTEKR 1093 (1320)
T ss_pred HHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455566777777888888888887777777766654
No 133
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.33 E-value=2.1e+02 Score=29.39 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=36.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHHH-HHhhhHHHHhHHHHHHHHHHHHHHHHHH
Q 011939 310 KAAWKNKEREVVEAAIESIAGELEVER-KLRRRFESLNKKLGKELAETKHSLLKAV 364 (474)
Q Consensus 310 K~awKsKE~eki~aai~slk~ELe~ER-K~Rrr~E~lN~KL~~ELaE~Kss~~~al 364 (474)
=..|+.+-.+-+...++.-.+.|..+. .+.+..+.++ .+.-+|.+.+.++..-+
T Consensus 139 WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 139 WYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD-ELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 346888888888888888888887655 4555555555 55566666555554433
No 134
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.04 E-value=1.7e+02 Score=28.44 Aligned_cols=111 Identities=24% Similarity=0.375 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 350 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~ 350 (474)
+.+.+.=|+.|.++...+.-.. ..++ ||.++... +|+.- -+-+.+.+..+..+|. +.|+.++.+|+.=-
T Consensus 99 ~~~w~~al~na~a~lehq~~R~----~NLe-Ll~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRL----ENLE-LLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRERK 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4455555555555544332221 1232 66666664 57532 2334444555555543 45666777775433
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccH
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDK 392 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edk 392 (474)
..=.++..-+...-+....--...--||..|-+|-.+|.+.+
T Consensus 168 ~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 168 RRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222222111222222223346666666654443333
No 135
>PRK14140 heat shock protein GrpE; Provisional
Probab=59.90 E-value=1.8e+02 Score=28.50 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=45.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 265 SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 265 ~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
.+..-+|..|..+|+..+..|.+|...-....-+++.+.|....|+...+.---+++-..+-.+-+.|
T Consensus 33 ~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888877777777777777777777775555444444444444444444
No 136
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=59.90 E-value=3.9e+02 Score=32.37 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhccCCcc
Q 011939 413 REMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKR 465 (474)
Q Consensus 413 R~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~~~~~~ 465 (474)
-+|=.+-+..-+.|-|.|+.+--+ ++ -.++.|+.|+|.+=.--+++..+
T Consensus 1066 aemdeik~~~~edrakqkei~k~L-~e---helenLrnEieklndkIkdnne~ 1114 (1424)
T KOG4572|consen 1066 AEMDEIKDGKCEDRAKQKEIDKIL-KE---HELENLRNEIEKLNDKIKDNNEG 1114 (1424)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHhhcCCCc
Confidence 344444445555566666555332 22 34677888888776655544444
No 137
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=59.43 E-value=1.7e+02 Score=28.14 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=54.7
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 405 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~ 405 (474)
..++.=.++-++.|++.+....||.+++...-..+.++.+.|+..-+.-+-...-.+.......-.+.+++.++....+.
T Consensus 94 ~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~ 173 (251)
T cd07653 94 KELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLK 173 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
Confidence 33444444557888899999999999999998888888888887776666555544444333333456666666655544
Q ss_pred H
Q 011939 406 L 406 (474)
Q Consensus 406 r 406 (474)
.
T Consensus 174 ~ 174 (251)
T cd07653 174 T 174 (251)
T ss_pred H
Confidence 3
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.93 E-value=1.7e+02 Score=27.82 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=51.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhh
Q 011939 262 DRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRR 341 (474)
Q Consensus 262 eq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr 341 (474)
.+-.....-+..|..++..-..+|.+|..+....+.++..+--.|.+- .+-.+.+.+.+.++.-++..=-.-.++
T Consensus 95 ~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek-----~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 95 QQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK-----NKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455677788888888888888888887777777776655553 445677777777777777665555667
Q ss_pred HHHHhHHHHHHHHHHHH
Q 011939 342 FESLNKKLGKELAETKH 358 (474)
Q Consensus 342 ~E~lN~KL~~ELaE~Ks 358 (474)
++.-|..|+.-+-+-|.
T Consensus 170 l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 170 LEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778888776665544
No 139
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.21 E-value=71 Score=31.04 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 331 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~E 331 (474)
-+..|+.+|+..+.++.+|........-+++.+.|....|+...+.--.+++-..+-.+.+.
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~Dn 94 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDS 94 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 36678888888888888888877777888888888888887554444444333333333333
No 140
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=58.07 E-value=4.1e+02 Score=32.06 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=66.0
Q ss_pred chhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHH
Q 011939 243 ALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 322 (474)
Q Consensus 243 ~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~ 322 (474)
+...++++++|||..-.-.=.++...+.|.-+..+|.+-++.|++-+++--.++..++.- ....++++-..-|--.++
T Consensus 155 G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r--~~~~~rl~~l~~elr~~~ 232 (984)
T COG4717 155 GSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESR--RAEHARLAELRSELRADR 232 (984)
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 456789999999998644446888889999999999999999999888888877766653 334445555555555555
Q ss_pred HHHHHHHHHhHHHHH
Q 011939 323 AAIESIAGELEVERK 337 (474)
Q Consensus 323 aai~slk~ELe~ERK 337 (474)
..|+.+.+.++.=..
T Consensus 233 ~~i~~~~~~v~l~~~ 247 (984)
T COG4717 233 DHIRALRDAVELWPR 247 (984)
T ss_pred HHHHHHHHHHhhHHH
Confidence 555555555544333
No 141
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=57.94 E-value=71 Score=28.83 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011939 315 NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE 383 (474)
Q Consensus 315 sKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDE 383 (474)
.++.+.+.+.+......++...+.-+.+-.|..|..+||+++|........+|-.-.+. -.+--.|--
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~R-L~v~a~C~~ 73 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKR-LRVKATCPA 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCce-EEEeccCCC
Confidence 34566777778888888999999999999999999999999999999988888877542 224446665
No 142
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.93 E-value=3.2e+02 Score=31.76 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=10.1
Q ss_pred hhHHHHHHHHhHHHHHH
Q 011939 296 QSEISYLMKCFAEEKAA 312 (474)
Q Consensus 296 ~~eie~l~KqlaEEK~a 312 (474)
..+++.|+.++.+++..
T Consensus 510 ~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 510 KEEINVLIEKLSALEKE 526 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666544
No 143
>PRK14158 heat shock protein GrpE; Provisional
Probab=57.77 E-value=98 Score=30.32 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 264 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 264 ~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
.+..-.-+..|+.+|+....++.+|...-....-+++.+.|....|+...+.---+.+-..+-.+-+-|
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnL 103 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNM 103 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 334445678888889888888888887777777888888888888875544444443333333333333
No 144
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.70 E-value=1.6e+02 Score=27.23 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=7.7
Q ss_pred hhcccHHHHHHHHHHhHHHH
Q 011939 387 DINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 387 eI~edkaEVe~LKres~k~r 406 (474)
.+.+.+.+++.+..+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLE 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333
No 145
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.40 E-value=2.8e+02 Score=30.03 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=49.6
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 011939 328 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDT-------EKRARVVIEQVCDELARDINDDKSEVEELKR 400 (474)
Q Consensus 328 lk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~-------ERKaRellE~vCDELAkeI~edkaEVe~LKr 400 (474)
+++-++.-..--+++.+-|.||.++|--+..-|.+.--+... -+....-++---|++.++++|.+.|...|-|
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 444444444556778899999999999998888776443321 1222333444557777788888877777777
Q ss_pred HhH
Q 011939 401 ESA 403 (474)
Q Consensus 401 es~ 403 (474)
|..
T Consensus 170 ELa 172 (401)
T PF06785_consen 170 ELA 172 (401)
T ss_pred HHH
Confidence 643
No 146
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=57.39 E-value=1.9e+02 Score=28.11 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=48.1
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Q 011939 328 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKR--ARVVIEQVCDELARDINDDKSEVEELKRES 402 (474)
Q Consensus 328 lk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERK--aRellE~vCDELAkeI~edkaEVe~LKres 402 (474)
|.+.|+.=.+++..++.+-...-.+|.+++.-....+.+...+-+ ...+++++=.|+.+-+.+-+.+++..|.+.
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A 165 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKA 165 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777777777777777777776666665544432 234556666666666666666666666543
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.19 E-value=3e+02 Score=30.24 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=73.9
Q ss_pred cchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH---------
Q 011939 242 NALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA--------- 312 (474)
Q Consensus 242 ~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a--------- 312 (474)
..|-....-+.+|..+-++. .-..-+..+..++..++..++++..+......+++.+.-++.|=..+
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~ 213 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGAN----EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEA 213 (563)
T ss_pred HHhcCHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHH
Confidence 34566677777777765421 11223445566666666777777666666666666666555442211
Q ss_pred -----hhhhhHHHHHHHHHHHHHHhHHHHHHh--hhHHHHhHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Q 011939 313 -----WKNKEREVVEAAIESIAGELEVERKLR--RRFESLNKKLGKELAETKHSLLKAVKDL-DTEKRARVVIEQVCDEL 384 (474)
Q Consensus 313 -----wKsKE~eki~aai~slk~ELe~ERK~R--rr~E~lN~KL~~ELaE~Kss~~~alkel-E~ERKaRellE~vCDEL 384 (474)
-+=...++|...+..+-.-|+++-..- -=+..++ ...+.|..+ +...+.++ +.-..+...+++++++|
T Consensus 214 L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~-~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~~~l 289 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLG-EAQLALASV---IDGSLRELAEQVGNALTEVEEATREL 289 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHH-HHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223445555555544443320000 0011111 111222221 22222222 23344566677777777
Q ss_pred Hh---hhcccHHHHHHHHHHhH
Q 011939 385 AR---DINDDKSEVEELKRESA 403 (474)
Q Consensus 385 Ak---eI~edkaEVe~LKres~ 403 (474)
.. .+.-|..+++++.....
T Consensus 290 ~~~~~~l~~dp~~L~ele~RL~ 311 (563)
T TIGR00634 290 QNYLDELEFDPERLNEIEERLA 311 (563)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH
Confidence 77 55556666666555433
No 148
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.18 E-value=1.3e+02 Score=30.28 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 011939 349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 410 (474)
Q Consensus 349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~E 410 (474)
|..|.+.++.-..+.-.++|+..+.=+-.++=-++|-|.+.+...|...|..++.+.+++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444444555555555555555555555555556666666666666777777777776654
No 149
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.67 E-value=1.3e+02 Score=25.96 Aligned_cols=50 Identities=34% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
++-+=|.+...-...|++..+.|.+.+.-.+. +|....+++..|+.+..+
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~-------ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEA-------EIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44445555666666777777777776664444 444444444544444333
No 150
>PRK14145 heat shock protein GrpE; Provisional
Probab=55.94 E-value=84 Score=30.86 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
.-+..|+.+|+.++..+.+|...-.....+++.+.|....|+...+.---+++-..|-.+-+.|
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnL 108 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNF 108 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 4577899999999999999988888888888898888888875554444444443333333333
No 151
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.50 E-value=2e+02 Score=27.79 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 350 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~ 350 (474)
|.-+...|..++..+-.+++.++....+++..-..+. -| .+++..||+. =|-=||
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~----~~----~~~A~~Al~~-----------------G~EdLA 87 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVA----DW----QEKAELALSK-----------------GREDLA 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHC-----------------CCHHHH
Confidence 4555556666666666666666655555544433332 22 2233333333 233366
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKre 401 (474)
++..+-|..+...+..|+.+-. -+...+++|-..|.+++.+++.+|..
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~---~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELA---AVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666666665543 37777888888888888888777665
No 152
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=54.85 E-value=2.8e+02 Score=29.28 Aligned_cols=161 Identities=24% Similarity=0.336 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhchhHHHHHHHH--hHHHH----HHhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 011939 271 VSALHAELERARLQVNQ----LIQEQRSDQSEISYLMKC--FAEEK----AAWKNKEREVVEAAIESIAGELEVERKLRR 340 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~e----L~~E~~s~~~eie~l~Kq--laEEK----~awKsKE~eki~aai~slk~ELe~ERK~Rr 340 (474)
|.-|+.|||.-+.+-.+ ...+....+...+.|-+- +.||. ..+-+.+-.-+.|----+..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 56788888876665543 233333444444455432 33442 334455555555555667788999999888
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh-------hhcccHHHHHHHHHHhHHHHHHH
Q 011939 341 RFESLNKKLGKELAETKHSLLKAVKDLDTEKRAR----VVIEQVCDELAR-------DINDDKSEVEELKRESAIALEEV 409 (474)
Q Consensus 341 r~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaR----ellE~vCDELAk-------eI~edkaEVe~LKres~k~reE~ 409 (474)
|+|. |+.-..+-+..|++|++.=-.++ -.+....||-.. .|.+.+...+-|-+...++.--.
T Consensus 88 rLEt-------EiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 88 RLET-------EIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence 7652 33333444444555555433332 223344444333 34444444444444433332111
Q ss_pred -HHhHHHHHHhHhhhH-----HhhhhhhhHhhhhh
Q 011939 410 -EKEREMIQVADVLRE-----ERAQIKLSEAKYQL 438 (474)
Q Consensus 410 -EeER~MLqmAEvWRE-----ERVQMKL~eAk~~l 438 (474)
--+-++-+..+.+|| |.||.-|..+...+
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~ 195 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDLSQTQCQI 195 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334444444444 45565555555443
No 153
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.79 E-value=3.5e+02 Score=30.27 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHh
Q 011939 281 ARLQVNQLIQEQRSDQSEISYLMKCF 306 (474)
Q Consensus 281 AR~rI~eL~~E~~s~~~eie~l~Kql 306 (474)
.+.++.+|..+......+++.+-++|
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.52 E-value=81 Score=35.00 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHH
Q 011939 346 NKKLGKELAETKHSLLKAVKDLDTE 370 (474)
Q Consensus 346 N~KL~~ELaE~Kss~~~alkelE~E 370 (474)
|..+-+||..+..++.+|-++||--
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444467777777777777776643
No 155
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.48 E-value=2.4e+02 Score=28.48 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
-+..|+.+|...+..+.+|...-.....+++.|.|+...|+...+..-.+++-..|-.+-+-|
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnL 130 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNF 130 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466788888888888888876666667778888877777765544444444443333333333
No 156
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=54.11 E-value=2.1e+02 Score=27.62 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 011939 320 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELA-ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL 398 (474)
Q Consensus 320 ki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELa-E~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~L 398 (474)
-+..++..|..|.+.. =..|..|+..|. ++..-+..+..+++++||. ++.--..+.+...+-...|+..
T Consensus 57 sl~~a~~~i~~e~e~~-------a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~---~~~~~~k~~k~~~~~~~~l~Ka 126 (236)
T cd07651 57 GLKNSLDTLRLETESM-------AKSHLKFAKQIRQDLEEKLAAFASSYTQKRKK---IQSHMEKLLKKKQDQEKYLEKA 126 (236)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555432 233444444444 3444455555555544442 2222223333333334455555
Q ss_pred HHHhHHHHHHHH
Q 011939 399 KRESAIALEEVE 410 (474)
Q Consensus 399 Kres~k~reE~E 410 (474)
|..-...+.+++
T Consensus 127 K~~Y~~~c~~~e 138 (236)
T cd07651 127 REKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHhHH
Confidence 555555554444
No 157
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=54.03 E-value=1e+02 Score=35.47 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHH
Q 011939 365 KDLDTEKRARVVIE 378 (474)
Q Consensus 365 kelE~ERKaRellE 378 (474)
|-||+||-.|+.||
T Consensus 663 QrLERErmErERLE 676 (940)
T KOG4661|consen 663 QRLERERMERERLE 676 (940)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.47 E-value=2.5e+02 Score=29.00 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=12.7
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 011939 233 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQS 297 (474)
Q Consensus 233 ~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~ 297 (474)
++.++.++.+-..+-.+.++-|. .+.. .-.-+..+..||........+|.+|-....+
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~-----~~~~--~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLE-----EESD--SEEDIEELEEELEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp -----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666655 1111 1122444555555544444444444443333
No 159
>PRK14156 heat shock protein GrpE; Provisional
Probab=53.46 E-value=68 Score=30.96 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
++..+|+..+.++.+|...-.....+++.+.|....|+..
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666666666666666666666543
No 160
>PRK14146 heat shock protein GrpE; Provisional
Probab=53.18 E-value=91 Score=30.89 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 333 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 333 (474)
+..|+.+|+.++..+.+|...-.....+++.+.|+...|+...+.---+++-..+-.+-+-|+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~Dnle 118 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLE 118 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 788889999999999999888888888999999999888866666555555555555555544
No 161
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.97 E-value=2.2e+02 Score=27.40 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
.+-+..|+.+++..+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+.|
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnl 83 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSL 83 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 35578888888888888888877777777788888887777765444444444333333333333
No 162
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=52.96 E-value=4.6e+02 Score=31.15 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHh
Q 011939 360 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEA 434 (474)
Q Consensus 360 ~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eA 434 (474)
.....++++.-++.=+-|+..=|.|...|.+..+|+..|++.+. +++-+|--.-.--.+++|++-+..+
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~------~~~~~mrd~~~~~~e~~~~~~~~~~ 286 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL------EKEQELRDHLRTYAERRRETETTNY 286 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hhhhhhcchhhhhHHHHHhhcchhh
Confidence 33444555555555566666667788888888888888884222 2233333333344455555554433
No 163
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=52.51 E-value=5.2e+02 Score=31.65 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=44.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 334 (474)
.+-+..-.|++|+..-.+++..|++|..++.+-.|-.-.|... .+++.+...+.|+.+++.+..
T Consensus 170 l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 170 LAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999887765555444422 234455556666666665554
No 164
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.51 E-value=2.1e+02 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKC 305 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kq 305 (474)
++.-+.+-+.-..+|--|+++....+.+.+++...
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444445555555555665555555555554443
No 165
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.06 E-value=1.6e+02 Score=31.86 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 352 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E 352 (474)
-|+.+|-|+|. +...-....+.+|-++.++.||..- ...-++++.. ..+..|.-+..|-+|
T Consensus 110 kL~nqL~~~~~----vf~k~k~~~q~LE~li~~~~EEn~~--------lqlqL~~l~~-------e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 110 KLKNQLFHVRE----VFMKTKGDIQHLEGLIRHLREENQC--------LQLQLDALQQ-------ECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHHH--------HHHhHHHHHH-------HHhHhHHHHHHHHHH
Confidence 35566665554 4445556667788888888888632 2333333333 233344556667777
Q ss_pred HHHHH
Q 011939 353 LAETK 357 (474)
Q Consensus 353 LaE~K 357 (474)
|+|+-
T Consensus 171 LaE~l 175 (401)
T PF06785_consen 171 LAEAL 175 (401)
T ss_pred HHHHH
Confidence 77754
No 166
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=51.03 E-value=6.7e+02 Score=32.49 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hhhchhHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQE-QRSDQSEIS 300 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E-~~s~~~eie 300 (474)
.-+.-|+.|-++-..|.++|..- +..+..+++
T Consensus 1278 ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~ 1310 (1822)
T KOG4674|consen 1278 AELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE 1310 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 34555666666666666666554 333333333
No 167
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.71 E-value=4.2e+02 Score=30.07 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=8.3
Q ss_pred cccHHHHHHHHhhhcC
Q 011939 103 PVSARKLAATLWEMNE 118 (474)
Q Consensus 103 ~vSARKLaAtLWE~n~ 118 (474)
++.+.-+++.|-|-|-
T Consensus 205 ~~~~~~~~~SlLe~na 220 (594)
T PF05667_consen 205 PPQAASRAPSLLECNA 220 (594)
T ss_pred ccccchhhhhHHhhcH
Confidence 3344555666655553
No 168
>PRK01156 chromosome segregation protein; Provisional
Probab=50.65 E-value=4.4e+02 Score=30.27 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.6
Q ss_pred chHHHHHHHHhhcCC
Q 011939 246 TSKELLKIINRMWGQ 260 (474)
Q Consensus 246 TS~ELlkVlnriw~l 260 (474)
++.+..+++.+|-++
T Consensus 147 ~~~~r~~~ld~~~~~ 161 (895)
T PRK01156 147 DPAQRKKILDEILEI 161 (895)
T ss_pred CHHHHHHHHHHHhCh
Confidence 344555555555433
No 169
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=50.46 E-value=1.9e+02 Score=32.49 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=28.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011939 342 FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQV 380 (474)
Q Consensus 342 ~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~v 380 (474)
++.+=.+|.+||+.++.+.-+++ ++.|.+...+++.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l--~~s~~~v~~l~~~l 39 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSL--LESEKQVNSLMEYL 39 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 56778899999999999998888 44455566665555
No 170
>PRK14147 heat shock protein GrpE; Provisional
Probab=50.07 E-value=1e+02 Score=29.44 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN 315 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs 315 (474)
.-+..|..+|+..+.++.+|...-....-+++.+.|....|+...+.
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARK 64 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556888888888888888877777778888888888877644433
No 171
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=49.95 E-value=1.9e+02 Score=25.84 Aligned_cols=57 Identities=40% Similarity=0.514 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 011939 344 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 400 (474)
Q Consensus 344 ~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKr 400 (474)
.+..++-.+|+-...++.++--=++.-.+.++--+....++-.+|...+.+++.||.
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~ 102 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKE 102 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544444444444444444444444444444444444443
No 172
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.74 E-value=2.3e+02 Score=26.63 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL 349 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL 349 (474)
-|-+|..||+-++..--.++.+--..+.+|..|--++.. +..-+..+..||..=|.-+.-+...=.+.
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~------------lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEE------------LTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888777887777777777776444332 23333334444443333222222222222
Q ss_pred ---HHHHHHHHHHHHHHHhHHHHH
Q 011939 350 ---GKELAETKHSLLKAVKDLDTE 370 (474)
Q Consensus 350 ---~~ELaE~Kss~~~alkelE~E 370 (474)
+.||.-..+++.+.+++.|.+
T Consensus 93 q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 93 QEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555555
No 173
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=48.24 E-value=23 Score=40.38 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH-------HhHHHHHHhH--------hhhHH-hhhhhhhHhhhh-
Q 011939 375 VVIEQVCDELARDINDDKSEVEELKRESAIALEEVE-------KEREMIQVAD--------VLREE-RAQIKLSEAKYQ- 437 (474)
Q Consensus 375 ellE~vCDELAkeI~edkaEVe~LKres~k~reE~E-------eER~MLqmAE--------vWREE-RVQMKL~eAk~~- 437 (474)
++.|+.-+.+++.|.+.+||||.||.++.|..+.+. -|+++=-..+ .||=| |+-|--.|--..
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~~~~ee~~~~~ 439 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLDTPDEEDESPV 439 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeecccccCCccCCCCcc
Confidence 345566666677788899999999999987765543 3554444444 89855 222211111111
Q ss_pred --hhhhh-HHHHHHHHHHHHHHhhhc
Q 011939 438 --LEEKN-AAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 438 --lEeK~-s~ldkL~~elE~FL~sk~ 460 (474)
.+.|. .-||....++|+-|..+-
T Consensus 440 ~~~~~k~k~~VDDIV~eVE~slGrki 465 (669)
T PF08549_consen 440 EQSENKPKYKVDDIVAEVEKSLGRKI 465 (669)
T ss_pred cccCccccccHHHHHHHHHHHhCCee
Confidence 11111 248999999999887653
No 174
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.02 E-value=5.3e+02 Score=30.39 Aligned_cols=77 Identities=26% Similarity=0.360 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHh---HHHHHHhhhhhHHHHHHHHHHHHHHhHHHH-HHhhhHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSD--QSEISYLMKCF---AEEKAAWKNKEREVVEAAIESIAGELEVER-KLRRRFE 343 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~--~~eie~l~Kql---aEEK~awKsKE~eki~aai~slk~ELe~ER-K~Rrr~E 343 (474)
-+.+|+.+|+-|-.+- +..|.+.. .--+..-|+|| .||. ..+|..+|--.-.|.+..| .+-.++.
T Consensus 25 e~~~lk~~l~~~~~~~--~~~e~r~~hld~aLkec~~qlr~~ree~-------eq~i~~~~~~~s~e~e~~~~~le~~l~ 95 (769)
T PF05911_consen 25 EAASLKQQLEAATQQK--LALEDRVSHLDGALKECMRQLRQVREEQ-------EQKIHEAVAKKSKEWEKIKSELEAKLA 95 (769)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4677888888774432 22222111 11122224433 3332 3345555544444554444 4445566
Q ss_pred HHhHHHHHHHHH
Q 011939 344 SLNKKLGKELAE 355 (474)
Q Consensus 344 ~lN~KL~~ELaE 355 (474)
.++.+|+.-=+|
T Consensus 96 e~~~~l~~~~~e 107 (769)
T PF05911_consen 96 ELSKRLAESAAE 107 (769)
T ss_pred HHHHHHHHHHhh
Confidence 666666544333
No 175
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.77 E-value=1.6e+02 Score=32.62 Aligned_cols=90 Identities=21% Similarity=0.321 Sum_probs=53.3
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH--
Q 011939 257 MWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV-- 334 (474)
Q Consensus 257 iw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~-- 334 (474)
=|-|-|.-++++|.|-|++.--.. ---+||++- ++-...++-|.+|.-+| |++|+.||+.
T Consensus 373 drLLAEETAATiSAIEAMKnAhrE--EmeRELeKs-qSvnsdveaLRrQylee---------------lqsvqRELeVLS 434 (593)
T KOG4807|consen 373 DRLLAEETAATISAIEAMKNAHRE--EMERELEKS-QSVNSDVEALRRQYLEE---------------LQSVQRELEVLS 434 (593)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHH--HHHHHHHhh-hccccChHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 366778888999999998752110 011233333 36667888888888887 4556666664
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhH
Q 011939 335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKD 366 (474)
Q Consensus 335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alke 366 (474)
|.=.-+=+| |.-|+..|.+-..++.+|-+|
T Consensus 435 EQYSQKCLE--nahLaqalEaerqaLRqCQrE 464 (593)
T KOG4807|consen 435 EQYSQKCLE--NAHLAQALEAERQALRQCQRE 464 (593)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444 344666666655555555443
No 176
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=47.64 E-value=1.8e+02 Score=24.97 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHH
Q 011939 282 RLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLL 361 (474)
Q Consensus 282 R~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~ 361 (474)
.....++.......-..++..+-++.-|+ +|+..+..++-.+ ++-|..|-+.=+..-.=|..+...|.++...|.
T Consensus 12 ~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek----~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~ 86 (96)
T PF08647_consen 12 FKELSEQADKKVKELTILEQKKLRLEAEK----AKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKEFV 86 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333444555566666664 5556666666554 455777766666666678889999999999999
Q ss_pred HHHhHHHHH
Q 011939 362 KAVKDLDTE 370 (474)
Q Consensus 362 ~alkelE~E 370 (474)
..++++|+|
T Consensus 87 ~~l~~~Eke 95 (96)
T PF08647_consen 87 RKLKNLEKE 95 (96)
T ss_pred HHHHHhhcc
Confidence 999999876
No 177
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.44 E-value=2.1e+02 Score=28.53 Aligned_cols=139 Identities=22% Similarity=0.232 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhh-hhhHHHHHHHHHHHHHHh--HHHH------------HHhhhH
Q 011939 278 LERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVEAAIESIAGEL--EVER------------KLRRRF 342 (474)
Q Consensus 278 L~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~aai~slk~EL--e~ER------------K~Rrr~ 342 (474)
++.-|.++.++.++-+ +|..=..=||..-| +---.-++.+||+|.+.= .-|+ ..-+..
T Consensus 7 ~~ekr~~l~eIf~esk-------Dff~LkelEKlG~kKgIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ 79 (203)
T KOG3433|consen 7 SDEKRMILLEIFQESK-------DFFQLKELEKLGSKKGIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDR 79 (203)
T ss_pred hHHHHHHHHHHHHhhH-------hHHHHHHHHHhCCccceehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHH
Confidence 4556666666665543 23333333444433 223334556666665432 2222 011222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH-------H-HHHhHH
Q 011939 343 ESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE-------E-VEKERE 414 (474)
Q Consensus 343 E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~re-------E-~EeER~ 414 (474)
++.-..|-.+|++...-.....+-.|++++.|+--|+--|||++.....+.+++.||-+..+..+ . +.-+..
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33445566666666666666667889999999999999999999998888888888888776653 1 334555
Q ss_pred HHHHhHhhh
Q 011939 415 MIQVADVLR 423 (474)
Q Consensus 415 MLqmAEvWR 423 (474)
|..-|-.|-
T Consensus 160 ~~eaanrwt 168 (203)
T KOG3433|consen 160 MAEAANRWT 168 (203)
T ss_pred HHHHHhhhh
Confidence 555555554
No 178
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=47.19 E-value=2.1e+02 Score=25.61 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=64.0
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHH
Q 011939 246 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAI 325 (474)
Q Consensus 246 TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai 325 (474)
|..||-..|+.- ...+.-+.+++-|..+..+++...+.+.+|...--+.+.+++.+-.++.+--. .+
T Consensus 5 S~~eL~~Ll~d~-~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~------------~~ 71 (150)
T PF07200_consen 5 STEELQELLSDE-EKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE------------EL 71 (150)
T ss_dssp TTHHHHHHHHH--HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH------------HH
T ss_pred CHHHHHHHHcCH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH------------HH
Confidence 345555555443 11122234556688889999999998888888777777777777666663321 12
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKre 401 (474)
..++.+...= .++...+..+..-.- +..-+ +.+-.-.|+.|++||...-+.+-.|+.+-.+
T Consensus 72 ~~L~~~~~~k---~~~~~~l~~~~s~~~--l~~~L----------~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~ 132 (150)
T PF07200_consen 72 KELESEYQEK---EQQQDELSSNYSPDA--LLARL----------QAAASEAEEESEELAEEFLDGEIDVDDFLKQ 132 (150)
T ss_dssp HHHHHHHHHH---HHHHHHHHHCHHHHH--HHHHH----------HHHHHHHHHHHHHHC-S-SSSHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHccCCHHH--HHHHH----------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 2222222111 112222232322221 11111 2223346778999999999988888877654
No 179
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=46.98 E-value=69 Score=28.98 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhh
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKE 317 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE 317 (474)
+..|..+|...+.++.+|...-.....+++.+.+.+..++...+...
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~ 59 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYA 59 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666655555545555555555555554443333
No 180
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=46.77 E-value=2.7e+02 Score=33.64 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=6.1
Q ss_pred HHHHHhhhcC
Q 011939 109 LAATLWEMNE 118 (474)
Q Consensus 109 LaAtLWE~n~ 118 (474)
|+..||||--
T Consensus 229 LG~ILYELLT 238 (1021)
T PTZ00266 229 LGCIIYELCS 238 (1021)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 181
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=46.56 E-value=1.3e+02 Score=25.84 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHh
Q 011939 378 EQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSR 457 (474)
Q Consensus 378 E~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~ 457 (474)
-.++..|.++..-|+.|+..-.....++..+-.++-.+ ...+ .=|.|.+.-|-+=..-|.....+|+.||.
T Consensus 6 t~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~i-Kkq~--------~vl~Et~~mipd~~~RL~~a~~~L~~~l~ 76 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDI-KKQE--------EVLEETKMMIPDCQQRLEKAVEDLEEFLE 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHH-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH-HHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888777777664433322 2222 22344555566666677778888999998
Q ss_pred hhcc
Q 011939 458 NQKG 461 (474)
Q Consensus 458 sk~~ 461 (474)
...+
T Consensus 77 ~~~~ 80 (90)
T PF02970_consen 77 EEEG 80 (90)
T ss_dssp HHHC
T ss_pred HCcC
Confidence 8776
No 182
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=46.20 E-value=6.1e+02 Score=30.62 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939 365 KDLDTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 365 kelE~ERKaRellE~vCDELAkeI~ 389 (474)
..+|+||+-+++--.+.+.=+..|.
T Consensus 1001 ~~~Eqer~D~~la~RlA~sd~~~v~ 1025 (1259)
T KOG0163|consen 1001 NQLEQERRDHELALRLANSDGGQVE 1025 (1259)
T ss_pred hHHHHHHHHHHHHHHHhhccCCccc
Confidence 3477777777655554444443333
No 183
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=45.99 E-value=4.5e+02 Score=28.96 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHH---------HhHHHH-HH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAG---------ELEVER-KL 338 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~---------ELe~ER-K~ 338 (474)
.-|+.|+.|+.....+|.+...+....+++|+++-+++.--.... ...++++...|..+.- -+-.|. ..
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~ 144 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQR 144 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhH
Confidence 446666666666666666666666666666666655443222111 2233344433433332 111111 22
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011939 339 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKR 372 (474)
Q Consensus 339 Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERK 372 (474)
=.|+-.+...|..++.+..-++.+.+++|-..+.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666677777777766666666666554443
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.96 E-value=4.8e+02 Score=29.29 Aligned_cols=64 Identities=33% Similarity=0.305 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHH--HHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939 276 AELERARLQVNQLIQEQRSDQSEISYL--MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353 (474)
Q Consensus 276 ~EL~~AR~rI~eL~~E~~s~~~eie~l--~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL 353 (474)
++|..-+....++++|..+.+.+...+ .+++.|.|+. +...-+..+..||.+|| -+|.+|.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~-------q~q~k~~k~~kel~~~~-------E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQ-------QLQTKLKKCQKELKEER-------EENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHhhH
Confidence 577777777778888877766655555 4556666543 23444555667777776 4566666553
No 185
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=45.51 E-value=1.7e+02 Score=24.14 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
-+++..|.-.|+....+|++|.+-|..-...|+.+-..|.+-... +.+.+.+.-+. =...=...|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~------~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV------EQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999988888888877777665421 22222221111 12222356888888888
Q ss_pred HHHH
Q 011939 348 KLGK 351 (474)
Q Consensus 348 KL~~ 351 (474)
++.+
T Consensus 79 ~l~~ 82 (92)
T PF14712_consen 79 RLQK 82 (92)
T ss_pred HHHH
Confidence 8754
No 186
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.04 E-value=2.5e+02 Score=31.31 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHH
Q 011939 261 EDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERK 337 (474)
Q Consensus 261 eeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK 337 (474)
.|.+..+ |..|-.++..-|.++..|+++....+.|-+.|.++-. .-..+|..+|+..+.||..|+.
T Consensus 54 gDTP~DT---lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~--------~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 54 GDTPADT---LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ--------SIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred CCCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHhhhHHHHHHHH
Confidence 3445544 6777788888888888888888877777776654332 2356788888887777776653
No 187
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=45.00 E-value=4.5e+02 Score=28.76 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939 300 SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 300 e~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 334 (474)
+.|-.++.+...+-+...-.-|.+.+..++.-|+.
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~ 192 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK 192 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554443
No 188
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.34 E-value=2.2e+02 Score=24.96 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939 361 LKAVKDLDTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 361 ~~alkelE~ERKaRellE~vCDELAkeI~ 389 (474)
.+.-++|+.+|+...+|-.|---|.-|-|
T Consensus 61 ~~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 61 EKLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444666677777777777766655544
No 189
>PRK14162 heat shock protein GrpE; Provisional
Probab=44.12 E-value=3.2e+02 Score=26.81 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 331 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~E 331 (474)
.-+..|..+|...+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+.
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~Dn 101 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDN 101 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 447888889999999999888777777778888888877776554444444433333333333
No 190
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=43.88 E-value=2e+02 Score=26.21 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhcc
Q 011939 374 RVVIEQVCDELARDIND 390 (474)
Q Consensus 374 RellE~vCDELAkeI~e 390 (474)
++..|.+|.++++-|.|
T Consensus 121 ~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 121 AEAYEGEIADYAKRIAE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666677776665544
No 191
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=43.79 E-value=3.4e+02 Score=26.96 Aligned_cols=40 Identities=8% Similarity=0.182 Sum_probs=28.8
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011939 334 VERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 373 (474)
Q Consensus 334 ~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa 373 (474)
+=+.+|+.....+.+|..||..+-..+.++.+.|++.-+.
T Consensus 102 ~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e 141 (237)
T cd07657 102 DKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLED 141 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777788888888888777777777777766543
No 192
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=43.40 E-value=2.5e+02 Score=27.39 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh--------HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRR--------FESLNKKLGKELAETKHSLLKAVKDLDTEKRAR 374 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr--------~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaR 374 (474)
-.+.+|.+..++..|++.|+.=++ .|.-=..|...+.++-..+..-++++|..+|..
T Consensus 44 aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~ 108 (215)
T PF07083_consen 44 AKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEE 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888775443 344445677777777777777888887777654
No 193
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=43.25 E-value=2.6e+02 Score=25.49 Aligned_cols=25 Identities=44% Similarity=0.476 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 011939 267 SMSLVSALHAELERARLQVNQLIQE 291 (474)
Q Consensus 267 ~~SlvsaLk~EL~~AR~rI~eL~~E 291 (474)
|-..|-||--||+.++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999887
No 194
>PRK14148 heat shock protein GrpE; Provisional
Probab=42.93 E-value=1.7e+02 Score=28.64 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
.-+.+|..+|...+..+.+|...-....-+++.+.|....|+..
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~ 83 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSN 83 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666777777777777777666666666667766666666533
No 195
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.88 E-value=3.6e+02 Score=26.95 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL 349 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL 349 (474)
.|.-++.+|..|+..+-+++..++....+++.+.....+= |.+.+.=+..-|-.|
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~-------------------------e~~A~~Al~~g~E~L 86 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL-------------------------EEKAELALQAGNEDL 86 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHCCCHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH-HHHhHHHHHHhHhhhHHhhh
Q 011939 350 GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE-VEKEREMIQVADVLREERAQ 428 (474)
Q Consensus 350 ~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE-~EeER~MLqmAEvWREERVQ 428 (474)
|+++.+ ...-+|+.|..+=..+.+-.+-|+.|+.....+..- -+-+..+-.+.-.|--.++|
T Consensus 87 Ar~al~-----------------~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~ 149 (225)
T COG1842 87 AREALE-----------------EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQ 149 (225)
T ss_pred HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhhhhh--hhhHHHHHHHHHHHHH
Q 011939 429 IKLSEAKYQLE--EKNAAVDKLRSQLEAF 455 (474)
Q Consensus 429 MKL~eAk~~lE--eK~s~ldkL~~elE~F 455 (474)
.++...-.... .=+..++++..-++.+
T Consensus 150 ~~v~~~~~~~s~~sa~~~fer~e~kiee~ 178 (225)
T COG1842 150 EKVNRSLGGGSSSSAMAAFERMEEKIEER 178 (225)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHHHH
No 196
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.78 E-value=2e+02 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 011939 337 KLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 370 (474)
Q Consensus 337 K~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~E 370 (474)
-.-+..-....||.+++..+-..|.++.+.+..-
T Consensus 64 ~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~ 97 (102)
T PF14523_consen 64 SNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEK 97 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566788888888877777777766543
No 197
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=42.55 E-value=7e+02 Score=30.23 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 303 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~ 303 (474)
.-+.+|.+||+++|-.-++-..|++.-+++...+.
T Consensus 365 ~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 365 NQLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999998877777766666666555543
No 198
>PRK14153 heat shock protein GrpE; Provisional
Probab=42.48 E-value=3.2e+02 Score=26.87 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN 315 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs 315 (474)
+.++..|++..+.++.+|...-.....+++.+.|....|+...+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~ 79 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRK 79 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777766666667777777777777644333
No 199
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=42.15 E-value=3.3e+02 Score=26.40 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=95.9
Q ss_pred hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 011939 245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA 324 (474)
Q Consensus 245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa 324 (474)
+++.++=.-||.|= ..|+.+|+.|+.|+..-+.........-.....+...|..-|. ++..-
T Consensus 9 ~af~~iK~YYndIT------~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~------------~a~~e 70 (201)
T PF13851_consen 9 KAFQEIKNYYNDIT------LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK------------KAEEE 70 (201)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHH
Confidence 34566777777773 4789999999999988877665555444333333322222111 11122
Q ss_pred HHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 325 IESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 325 i~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
+..++.+|.. ..|.-..|..+|.-+...-++|..-+-.-++++.=|..+-.+-.+.....+..-.+...
T Consensus 71 ~~eL~k~L~~-----------y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 71 VEELRKQLKN-----------YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333332 33444455666666666666777777777888888877766654444333332222111
Q ss_pred HHH--HHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 405 ALE--EVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 405 ~re--E~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
--+ -+=-|++|--|.+.. |.-...|.+.-.+.-=.-+.++.+...|+.-|.+|.
T Consensus 140 k~~~kn~lLEkKl~~l~~~l--E~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 140 KTGLKNLLLEKKLQALSEQL--EKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 100 122355555555533 222222222222221223456666777777777765
No 200
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=41.90 E-value=1.3e+02 Score=26.60 Aligned_cols=63 Identities=30% Similarity=0.370 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 011939 277 ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAET 356 (474)
Q Consensus 277 EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~ 356 (474)
+|...+.+..++++++.....||+.|...|-+|- .. +| .++|+.|-.+|.-|..|.+.|.|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA-------N~----MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA-------NK----MV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888889999988887774 11 12 567888888888888888877775
Q ss_pred H
Q 011939 357 K 357 (474)
Q Consensus 357 K 357 (474)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 201
>PRK14155 heat shock protein GrpE; Provisional
Probab=41.75 E-value=1.5e+02 Score=29.37 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 272 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
..|..+|+..+.++.+|........-+++.+.|+...|+..
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888777666777777777777776633
No 202
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.44 E-value=6.6e+02 Score=29.64 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHH
Q 011939 267 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 308 (474)
Q Consensus 267 ~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaE 308 (474)
..+....|..+|+...+...+|+-+......+++.+.-+|.|
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E 628 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKE 628 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777777643
No 203
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.06 E-value=3.7e+02 Score=26.65 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhc
Q 011939 449 RSQLEAFSRNQK 460 (474)
Q Consensus 449 ~~elE~FL~sk~ 460 (474)
..||..|...++
T Consensus 237 ~~Di~~fv~~~~ 248 (261)
T cd07674 237 ENLIRKFAESKG 248 (261)
T ss_pred HHHHHHHHHhCC
Confidence 467888998876
No 204
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.40 E-value=6.6e+02 Score=29.33 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=22.2
Q ss_pred HHhHhhh-HHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 011939 417 QVADVLR-EERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 455 (474)
Q Consensus 417 qmAEvWR-EERVQMKL~eAk~~lEeK~s~ldkL~~elE~F 455 (474)
.+++.+. -+.+++.+.+....+++-...++++...+..+
T Consensus 397 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 397 ELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 35566666666666666666666655555443
No 205
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=40.37 E-value=1.1e+02 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHhhhHHHHhH
Q 011939 325 IESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 325 i~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
|++|..+|+.|.+.+.=+|.+=+
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~ 25 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQ 25 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555433
No 206
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=40.32 E-value=3.8e+02 Score=26.75 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 396 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe 396 (474)
-+.+...++.++...+.-...|..+..+-..++.++.........+-+.+...-+ .+...|-.++....+.-.+|.
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v~ 145 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEVS 145 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555544444444333333222 244455555555444444333
No 207
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.04 E-value=4.9e+02 Score=27.70 Aligned_cols=8 Identities=13% Similarity=0.169 Sum_probs=4.1
Q ss_pred HHHHhhhc
Q 011939 110 AATLWEMN 117 (474)
Q Consensus 110 aAtLWE~n 117 (474)
++-+|-+-
T Consensus 33 ~~~~WA~~ 40 (457)
T TIGR01000 33 FLVLFSLF 40 (457)
T ss_pred HHHHHHHh
Confidence 44456544
No 208
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=39.14 E-value=10 Score=34.34 Aligned_cols=39 Identities=38% Similarity=0.544 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 324 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 324 ai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
-++.+..+|..|+=.|+.+|.+|.-|++||+.+|..+-.
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l~ 104 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELLS 104 (108)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999876543
No 209
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=39.00 E-value=6.7e+02 Score=28.99 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 307 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla 307 (474)
.-++-+..|..+|.+.++.+.++..+..+.+.+.+.|-+++.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 344667888889999999999988888887777777766655
No 210
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.81 E-value=5.7e+02 Score=28.15 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=8.4
Q ss_pred hHHHHHHhhhHHHHhHHHHHH
Q 011939 332 LEVERKLRRRFESLNKKLGKE 352 (474)
Q Consensus 332 Le~ERK~Rrr~E~lN~KL~~E 352 (474)
||+|..-.++.|....||..-
T Consensus 155 iEFe~~e~kK~E~~k~Kl~~q 175 (561)
T KOG1103|consen 155 IEFEIEEKKKAEIAKDKLEMQ 175 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444333
No 211
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.02 E-value=4e+02 Score=26.17 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh--------hhchhHHHHHHHHhHHHHHHhhhhhHH
Q 011939 248 KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQ--------RSDQSEISYLMKCFAEEKAAWKNKERE 319 (474)
Q Consensus 248 ~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~--------~s~~~eie~l~KqlaEEK~awKsKE~e 319 (474)
++|.|.+.-.=.-| +.+|-.+|.. |.-+-+.|..+-+++ -.-=++...+.+++-++...|...
T Consensus 42 ~~fak~~~~la~~E-----~~~L~~~L~~-lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~a--- 112 (211)
T cd07598 42 DELAKSINAYADTE-----NPSLKQGLKN-FAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTA--- 112 (211)
T ss_pred HHHHHHHHHHHhcc-----CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 67777777764444 3455444443 444555555544433 111122222333333333222221
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHH---hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccH
Q 011939 320 VVEAAIESIAGELEVERKLRRRFESL---NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDK 392 (474)
Q Consensus 320 ki~aai~slk~ELe~ERK~Rrr~E~l---N~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edk 392 (474)
=+.|-+.+.++|.+ |.---.++.+++..+.+|-.|++ |-.+.|.|+|..==-..+.+.|
T Consensus 113 ------------r~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~--r~s~~l~ee~~rFe~~k~~d~K 174 (211)
T cd07598 113 ------------RNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDAN--RSTKELEEQMDNFEKQKIRDIK 174 (211)
T ss_pred ------------HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 12333344555555 21112277788888888887664 4555566665543333333333
No 212
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.81 E-value=4.1e+02 Score=26.17 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 011939 342 FESLNKKLGKELAETKHSLLKAVKDLDT 369 (474)
Q Consensus 342 ~E~lN~KL~~ELaE~Kss~~~alkelE~ 369 (474)
++.-|.+|..||.+++.-+..+-.+++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777766655444333333
No 213
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=37.75 E-value=12 Score=41.85 Aligned_cols=179 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred chhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHH
Q 011939 243 ALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 322 (474)
Q Consensus 243 ~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~ 322 (474)
...|=..|..++-.+=..........-....+...+..+-.++..+..++.........|-++++.-. .|.+.+.
T Consensus 139 d~~~Q~~im~~Iqev~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~-----~e~~~L~ 213 (713)
T PF05622_consen 139 DESTQHAIMEAIQEVTSNQQNVSLSQDSPEDLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQ-----EEKESLQ 213 (713)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHhh
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH---
Q 011939 323 AAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK--- 399 (474)
Q Consensus 323 aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LK--- 399 (474)
+-++.+...+. ..-.....-+.-++.++++++.-+...-.++++---++.-++.-|+++-++|.+.+.++++|.
T Consensus 214 ~e~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A 290 (713)
T PF05622_consen 214 SENEELQERLS---QLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA 290 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhhcccC---CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 011939 400 RESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 455 (474)
Q Consensus 400 res~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~F 455 (474)
++....++|++. |-++...+++|..+||.|
T Consensus 291 ~~a~~LrDElD~--------------------------lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 291 REARALRDELDE--------------------------LREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHhhhHHH--------------------------HHHHHHHHHHHHHHHHHH
No 214
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.74 E-value=3.3e+02 Score=25.08 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHH
Q 011939 267 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA 311 (474)
Q Consensus 267 ~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~ 311 (474)
+..-+..|..|+..-+.++.+|..+....+.++..|...++.+-+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 455689999999999999999999999999999999998887753
No 215
>PRK14161 heat shock protein GrpE; Provisional
Probab=37.19 E-value=2.3e+02 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhH
Q 011939 344 SLNKKLGKELAETKHSLLKAVKD 366 (474)
Q Consensus 344 ~lN~KL~~ELaE~Kss~~~alke 366 (474)
....+++++|..+--.|..|+.-
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~~ 88 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALAH 88 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhc
Confidence 34556666666666666666543
No 216
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=37.09 E-value=2.9e+02 Score=24.23 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=4.3
Q ss_pred HHHHHHHHhhhc
Q 011939 378 EQVCDELARDIN 389 (474)
Q Consensus 378 E~vCDELAkeI~ 389 (474)
+++-+.|...+.
T Consensus 136 ~~~~~~l~~~~~ 147 (202)
T PF01442_consen 136 EELSEELTERAE 147 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHhhhHH
Confidence 333333333333
No 217
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=37.07 E-value=1.2e+02 Score=33.93 Aligned_cols=55 Identities=29% Similarity=0.374 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHH
Q 011939 275 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGK 351 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ 351 (474)
++-|+.-|+||.||..=-.. |-++- .| -|.-|+.+||.|+++|-++|.--.||.+
T Consensus 568 k~s~delr~qi~el~~ive~-------lk~~~--------~k-------el~kl~~dleeek~mr~~lemei~~lkk 622 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEA-------LKKDH--------GK-------ELEKLRKDLEEEKTMRSNLEMEIEKLKK 622 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHH--------HH-------HHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 55688889999998653322 22111 11 2344777888888888877765555544
No 218
>PRK12704 phosphodiesterase; Provisional
Probab=36.71 E-value=6.3e+02 Score=28.06 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 011939 279 ERARLQVNQLI 289 (474)
Q Consensus 279 ~~AR~rI~eL~ 289 (474)
..|+...+++.
T Consensus 34 ~~Ae~eAe~I~ 44 (520)
T PRK12704 34 KEAEEEAKRIL 44 (520)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 219
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.68 E-value=3.3e+02 Score=26.34 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCCCCCC-cchh-HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhH
Q 011939 248 KELLKIINRMWGQEDRPS-SSMS-LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER 318 (474)
Q Consensus 248 ~ELlkVlnriw~leeq~~-s~~S-lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ 318 (474)
.+|-.+|.++= +|++- ..++ +-.-|+..|++|+.....|..+-+....+.+.+...+...-..|+..++
T Consensus 60 ~dLe~~l~rLe--EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 60 PDLEEALIRLE--EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred ccHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444788874 55543 3322 4455889999999999999999999999999999999988888886443
No 220
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=36.30 E-value=90 Score=27.00 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
|.-+.-||++.++.|+.|++|--..+=.|-||---||-||.+
T Consensus 28 vgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 677899999999999999999887777888887777777754
No 221
>PRK04654 sec-independent translocase; Provisional
Probab=36.29 E-value=2.6e+02 Score=28.21 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 011939 344 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 410 (474)
Q Consensus 344 ~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~E 410 (474)
.+=+.|++=+.+++..+..+..++++|=+.. ||-+.+.+.++++..++.+......|++
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~El~~~--------ELrk~l~~~~~~i~~~~~~lk~~~~el~ 85 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERELEAE--------ELKRSLQDVQASLREAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666665432 3333344444444444444444444444
No 222
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=36.24 E-value=3.8e+02 Score=25.35 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Q 011939 328 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKR--ARVVIEQVCDELARDINDDKSEVEELKRES 402 (474)
Q Consensus 328 lk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERK--aRellE~vCDELAkeI~edkaEVe~LKres 402 (474)
+.+.|+.=.+.+..++.+-...-..|.+++....+.+.+...+-. ..+++++.=.|.++.+.+-+++++..|.+.
T Consensus 67 I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a 143 (181)
T PRK13454 67 ITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGA 143 (181)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555566555555555544432221 234444444455555555555555555443
No 223
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.09 E-value=9.3e+02 Score=29.85 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH----HhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHH-
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMK----CFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL- 345 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~K----qlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~l- 345 (474)
|..|..+|+...+++.+|.+....-..+.+.|=. .=+.....-...+-+.....+.....+++.-++.-+..+.-
T Consensus 751 IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 751 LAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHHhHHHHH
Q 011939 346 ---------------NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL---ARDINDDKSEVEELKRESAIALE 407 (474)
Q Consensus 346 ---------------N~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL---AkeI~edkaEVe~LKres~k~re 407 (474)
+..+...|.+...++..+.-.++.=..+...+....+++ ...+.+.++++..+..+......
T Consensus 831 ~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~ 910 (1353)
T TIGR02680 831 ERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASL 910 (1353)
T ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 408 EVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 408 E~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
+++.=+..+... .+=|+.+|.+++..|++-...+..+..++-+
T Consensus 911 ~l~~l~e~l~~~----~eel~a~L~e~r~rL~~l~~el~~~~~~~~~ 953 (1353)
T TIGR02680 911 RLRTLEESVGAM----VDEIRARLAETRAALASGGRELPRLAEALAT 953 (1353)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.89 E-value=4.9e+02 Score=28.29 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 362 KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 362 ~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
-..+.|+.||-..+.||+.-+++... ...|+..||++..-
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTEL---HQNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 34556777888888888888888643 56777777777543
No 225
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=35.71 E-value=3.7e+02 Score=29.30 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=81.1
Q ss_pred HHHHHHHHhhcCCCCCCC-cchhHHHHHHHHHHHH--------HHHHHHHHHHhhhchhHHHHHHH----HhHHHHHHhh
Q 011939 248 KELLKIINRMWGQEDRPS-SSMSLVSALHAELERA--------RLQVNQLIQEQRSDQSEISYLMK----CFAEEKAAWK 314 (474)
Q Consensus 248 ~ELlkVlnriw~leeq~~-s~~SlvsaLk~EL~~A--------R~rI~eL~~E~~s~~~eie~l~K----qlaEEK~awK 314 (474)
....++|.=+.+|.+.++ .+-|=+..+-.+|.+. ..+|.+|++++.....||+.+-. -+.++.
T Consensus 100 ~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~---- 175 (478)
T PF11855_consen 100 PAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQ---- 175 (478)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH----
Confidence 456677777777777754 7778888888888775 46899999999988888888843 333333
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHH
Q 011939 315 NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK 357 (474)
Q Consensus 315 sKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~K 357 (474)
-.|++..+++-+.+=+.|=|+.+-..+.+|+.|-..+.+-.
T Consensus 176 --~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~~~ 216 (478)
T PF11855_consen 176 --ARERARQILQLARELPADFRRVEDNFRELDRALRERIIDWD 216 (478)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 37888888888888889999999999999999988776643
No 226
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=35.11 E-value=4.8e+02 Score=34.27 Aligned_cols=118 Identities=26% Similarity=0.279 Sum_probs=72.6
Q ss_pred hHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHhhhcccHHHHHHHHHH-
Q 011939 341 RFESLNKKL---GKELAETKHSLLKAVKDLDTEKRAR---------------VVIEQVCDELARDINDDKSEVEELKRE- 401 (474)
Q Consensus 341 r~E~lN~KL---~~ELaE~Kss~~~alkelE~ERKaR---------------ellE~vCDELAkeI~edkaEVe~LKre- 401 (474)
..|.+|+|+ -++.+.+|-++-.|.+-.-+=+|+- ..||+|||=|--+..+++.+-..||+.
T Consensus 2163 ~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrDD 2242 (3164)
T COG5245 2163 LEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRDD 2242 (3164)
T ss_pred hHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhhh
Confidence 334444444 3567777777777776666666652 349999987766666666555555532
Q ss_pred -----------------hHHHHHHHH-----------------------------HhHHHHHHhHhhhHHhhhhhhhHhh
Q 011939 402 -----------------SAIALEEVE-----------------------------KEREMIQVADVLREERAQIKLSEAK 435 (474)
Q Consensus 402 -----------------s~k~reE~E-----------------------------eER~MLqmAEvWREERVQMKL~eAk 435 (474)
..+-+|+-+ -=+++|..-+..|+|=-..++. |
T Consensus 2243 fi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E-~- 2320 (3164)
T COG5245 2243 FIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE-A- 2320 (3164)
T ss_pred HHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH-H-
Confidence 122222111 1256777778888885544444 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 436 YQLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 436 ~~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
+..|+....-..|..+|++|+.-.+
T Consensus 2321 ~~~e~~L~~~~~~s~dl~~~~l~~r 2345 (3164)
T COG5245 2321 FLVEDRLTLGKGLSSDLMTFKLRRR 2345 (3164)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2337777778889999999987544
No 227
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.04 E-value=9e+02 Score=29.36 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 390 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~e 390 (474)
.|..+=++...-+....|.+|.+..+-.=++++--+|+..|.+
T Consensus 435 ~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~ 477 (980)
T KOG0980|consen 435 ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEE 477 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444445555556666777777777766666666666655543
No 228
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.30 E-value=1.6e+02 Score=27.71 Aligned_cols=18 Identities=33% Similarity=0.435 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHhHHHHHH
Q 011939 391 DKSEVEELKRESAIALEE 408 (474)
Q Consensus 391 dkaEVe~LKres~k~reE 408 (474)
-+.++++||.+++....|
T Consensus 173 ~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677778888877766554
No 229
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.99 E-value=4.4e+02 Score=30.48 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhH
Q 011939 364 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD 420 (474)
Q Consensus 364 lkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAE 420 (474)
+|+|-.-+..|+.+++...-||+.|.+.+..-|.|.+...+++--.--+...|-+||
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AE 657 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAE 657 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHH
Confidence 344444455577888888888888888777777777776665543333334444444
No 230
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=33.87 E-value=1.2e+02 Score=34.81 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 011939 282 RLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKL 338 (474)
Q Consensus 282 R~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~ 338 (474)
|+++..|.+|++. |+..+..+..+-|.. ...|-++.+.+||. ||||||-
T Consensus 3 RdkL~~Lq~ek~~---E~~~l~~~~~~lk~~-~~~el~~Lk~~vqk----LEDEKKF 51 (654)
T PF09798_consen 3 RDKLELLQQEKQK---ERQALKSSVEELKES-HEEELNKLKSEVQK----LEDEKKF 51 (654)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH-hHHHHHHHHHHHHH----HHHHHHH
Confidence 6778888888864 555555555544433 23456677777777 7888873
No 231
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.73 E-value=5.1e+02 Score=26.08 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHh--hhcccHHHHHHHHHHhHHH
Q 011939 372 RARVVIEQVCDELAR--DINDDKSEVEELKRESAIA 405 (474)
Q Consensus 372 KaRellE~vCDELAk--eI~edkaEVe~LKres~k~ 405 (474)
|++.--+..|.|.-+ ..+--+.+|+.+..+..+.
T Consensus 134 KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka 169 (269)
T cd07673 134 KSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKA 169 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444555555554321 1122345555554444444
No 232
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.65 E-value=2.8e+02 Score=23.24 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESI 328 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~sl 328 (474)
..+--|..|++|++.-+.....|..+... +..--.++.+|+.+|.. +|++.+.-|
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~----L~~en~~L~~e~~~~~~----rl~~LL~kl 69 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEE----LKEENEQLKQERNAWQE----RLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 55667888999998888888888755544 44455566688888854 555555544
No 233
>PRK14144 heat shock protein GrpE; Provisional
Probab=33.51 E-value=2.9e+02 Score=27.36 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
+..|..+|+.....+.+|.........+.+.+.|....|+..
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~ 88 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVAN 88 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777776655555566666666666666533
No 234
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.45 E-value=4.7e+02 Score=29.67 Aligned_cols=47 Identities=32% Similarity=0.386 Sum_probs=31.0
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 379 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~ 379 (474)
..|+-|+-+||.+| |+|.+-|+.|..--+ .+-|.+.+|||.+..+.+
T Consensus 531 ~ELkmd~lrerelr---eslekql~~ErklR~----~~qkr~kkEkk~k~k~qe 577 (641)
T KOG3915|consen 531 TELKMDFLRERELR---ESLEKQLAMERKLRA----IVQKRLKKEKKAKRKLQE 577 (641)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35777888888888 566677887754432 334456668887765544
No 235
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.36 E-value=3.2e+02 Score=23.60 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939 274 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353 (474)
Q Consensus 274 Lk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL 353 (474)
+..+|+.-+..+..+.........+++.--.+|.++...... --....+-........+.|.+.+...+.-=.+|..+|
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~-flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDK-FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444444444433221110 0000011112233446778888888888888999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011939 354 AETKHSLLKAVKDLDTEKRARVVIEQVCDE 383 (474)
Q Consensus 354 aE~Kss~~~alkelE~ERKaRellE~vCDE 383 (474)
..+++-..+.-..++.=..=...|+.|.+.
T Consensus 91 ~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~ 120 (126)
T PF13863_consen 91 EELKSEISKLEEKLEEYKKYEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888888888888888888887653
No 236
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.33 E-value=7.9e+02 Score=29.26 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=61.9
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011939 300 SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 379 (474)
Q Consensus 300 e~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~ 379 (474)
+..+-++-||..+.-.++..++-....+++.+.-.+..+--..+. ..|.-+|++-|..+.+.-.++|+-.+.+-++|.
T Consensus 492 ~~~l~~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~--~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~ 569 (809)
T KOG0247|consen 492 KETLDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLES--QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEY 569 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 334444445555555555556666677777766666655555554 778888888888888877776666665555554
Q ss_pred HHHHHHhhhcccHHHHHHHHHHhH
Q 011939 380 VCDELARDINDDKSEVEELKRESA 403 (474)
Q Consensus 380 vCDELAkeI~edkaEVe~LKres~ 403 (474)
=-+=+-.. +++.+++.+..+.+
T Consensus 570 ~~~i~E~~--~~~~~i~~l~~el~ 591 (809)
T KOG0247|consen 570 SIEILEST--EYEEEIEALDQELE 591 (809)
T ss_pred hhhhhhcc--hhhhhhHHHHHHHH
Confidence 32222222 66777777776644
No 237
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=33.19 E-value=2.4e+02 Score=25.56 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=60.9
Q ss_pred hhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHH
Q 011939 244 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEA 323 (474)
Q Consensus 244 L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~a 323 (474)
|.=|++|+.+==-.=-|-|||-+ =+..|+.++-.+-.+|-+|+.... +...
T Consensus 6 LqISKeLVDLQIe~~rL~Eq~Ea---E~FELk~~vL~lE~rvleLel~~~--------------------------~~~~ 56 (108)
T PF14739_consen 6 LQISKELVDLQIETNRLREQHEA---EKFELKNEVLRLENRVLELELHGD--------------------------KAAP 56 (108)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcc--------------------------hhhH
Confidence 45566766541100113466653 477888888888888888877653 1122
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011939 324 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV 375 (474)
Q Consensus 324 ai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRe 375 (474)
.+.++.+.+. -++....+|+.|+.-.+..+...-++++.|....+
T Consensus 57 ~~~~~~~~~~-------~~~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~q 101 (108)
T PF14739_consen 57 QIADLRHRLA-------EAQEDRQELQEEYVSLKKNYQALPKAFEAEVAKNQ 101 (108)
T ss_pred HHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 2333333222 34556778999999999999999999988876543
No 238
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=33.15 E-value=5.6e+02 Score=26.41 Aligned_cols=101 Identities=30% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH--HHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 285 VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV--ERKLRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 285 I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~--ERK~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
+++|.+-+.+.+.|++.|-.-+..+...--++-+.+-+..+.++....-+ ...+++++ .-|..+.+|
T Consensus 126 ~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~-~~N~~m~ke---------- 194 (258)
T PF15397_consen 126 VRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRT-LENQVMQKE---------- 194 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHH----------
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 011939 363 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE 407 (474)
Q Consensus 363 alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~re 407 (474)
=..--+.-++|-.+|...++||+.|.......|+
T Consensus 195 -----------i~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 195 -----------IVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
No 239
>PRK00106 hypothetical protein; Provisional
Probab=33.12 E-value=7.5e+02 Score=27.88 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHH-HHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 011939 278 LERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIE-SIAGELEVERKLRRRFESLNKKLGKELAET 356 (474)
Q Consensus 278 L~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~-slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~ 356 (474)
+..|+...+++.++-...-++...-.+.=+++...-+..|.++--..=+ .+... |+++.++.+.|++|. .+|..-
T Consensus 48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qr---E~rL~qREE~LekRe-e~Lekr 123 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQI---ESRLTERATSLDRKD-ENLSSK 123 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH--HHHHHHHh
Q 011939 357 KHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI--ALEEVEKE 412 (474)
Q Consensus 357 Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k--~reE~EeE 412 (474)
+..+.+-.++|+...+.=+-.++-++++-.+....=.++-.|-.+-.| +.+.+++|
T Consensus 124 E~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~ 181 (535)
T PRK00106 124 EKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENK 181 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
No 240
>PRK14141 heat shock protein GrpE; Provisional
Probab=33.01 E-value=2.4e+02 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh
Q 011939 274 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK 316 (474)
Q Consensus 274 Lk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK 316 (474)
|..+|+..+.++.+|...-....-+++.|.|....|+...+.-
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666555556667777777777666444333
No 241
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.67 E-value=5.9e+02 Score=26.52 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011939 320 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV 375 (474)
Q Consensus 320 ki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRe 375 (474)
.+..-.+.|+.|+...+. ..+-++.-=..||..+|..+.....+++.-++.-.
T Consensus 176 ~l~~~~~~L~~e~~~L~~---~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 176 KLRDRKDALEEELRQLKQ---LEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHH---hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566655433 33333333356666777777766666666555533
No 242
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=32.61 E-value=8.1e+02 Score=28.07 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=74.7
Q ss_pred cchhHH-HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh--HHHHHHhhhhhH---HHHHHHHHHHHHHhHHHHHHh
Q 011939 266 SSMSLV-SALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKER---EVVEAAIESIAGELEVERKLR 339 (474)
Q Consensus 266 s~~Slv-saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~---eki~aai~slk~ELe~ERK~R 339 (474)
+..|-+ .+|+.|+.+-+..+..|....+..-.+.+.|..-. -++++.---+.- .--..-...|-+.++-+|-.=
T Consensus 76 a~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 76 AGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA 155 (617)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 334444 48899999888888888876665444444443322 222222100000 000112333444555566666
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 011939 340 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 399 (474)
Q Consensus 340 rr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LK 399 (474)
-|+-+-|+.|..-|.|...+|-+.-.+-=.-.-+-..-..|-.||++.+++++.++..|+
T Consensus 156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999998886655311122333333444455555555555555554
No 243
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=32.48 E-value=8.1e+02 Score=28.07 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=94.6
Q ss_pred cccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh
Q 011939 236 RLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN 315 (474)
Q Consensus 236 r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs 315 (474)
.+++.+|-|.+ ..+=+-+.++ .++-..+-++|..| |||.|..-+..+ +.+|+.|-..|.-|-.|.+.
T Consensus 240 ~m~~~gY~l~~-~~id~~~~~L---~~~l~~~~~~l~~L--eld~aeeel~~I-------~e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 240 DMKEEGYHLEH-VNIDSRLERL---KEQLVENSELLTQL--ELDEAEEELGLI-------QEKIESLYDLLEREVEAKNV 306 (570)
T ss_pred HHHHccCCccc-ccHHHHHHHH---HHHHHHHHhHHHHh--hhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 46666777766 3333333333 34434444555443 577777665543 33577777777777766655
Q ss_pred hh---------HHHHHHHHHHHHHHhHHHHHHhhhHHH---HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011939 316 KE---------REVVEAAIESIAGELEVERKLRRRFES---LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE 383 (474)
Q Consensus 316 KE---------~eki~aai~slk~ELe~ERK~Rrr~E~---lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDE 383 (474)
=+ -++++..-.-+++|.+.=+..=+=.|. --+++.+||.+.++.+...+..++....+=-.+.+--.+
T Consensus 307 V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~ 386 (570)
T COG4477 307 VEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEE 386 (570)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 33 356666666677777665554443332 347889999999999999999999888887777777777
Q ss_pred HHhhhcccHHHHHHH
Q 011939 384 LARDINDDKSEVEEL 398 (474)
Q Consensus 384 LAkeI~edkaEVe~L 398 (474)
+-+++.+-+.+-+.+
T Consensus 387 ~~~~l~~i~~~q~~~ 401 (570)
T COG4477 387 IEKALTDIEDEQEKV 401 (570)
T ss_pred HHHHHHHHhhhHHHH
Confidence 777666554444433
No 244
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.38 E-value=5.2e+02 Score=25.81 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=51.8
Q ss_pred HHHHhHHHHH---HHHHHHHHHHHHH---------hHHHHHHHHHHHH-HHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 011939 342 FESLNKKLGK---ELAETKHSLLKAV---------KDLDTEKRARVVI-EQVCDELARDINDDKSEVEELKRESAIALEE 408 (474)
Q Consensus 342 ~E~lN~KL~~---ELaE~Kss~~~al---------kelE~ERKaRell-E~vCDELAkeI~edkaEVe~LKres~k~reE 408 (474)
.+.+..|++. ||++.+..+..+. .+.+ +-++...- .+.-+.|-.++..+++|+...++..+.....
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~d-eak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLLSESD-EAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccc-hhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3446666655 6777776666650 1111 11111111 2334445555555555555555555555555
Q ss_pred HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 409 VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 409 ~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
.+.||. +|.||.=. ..-=.-+|...|-+|=+=-..||.
T Consensus 161 Fe~ER~------~W~eEKek--Vi~YQkQLQ~nYvqMy~rn~~LE~ 198 (202)
T PF06818_consen 161 FEQERR------TWQEEKEK--VIRYQKQLQQNYVQMYQRNQALER 198 (202)
T ss_pred HHHHHH------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667775 58887532 222333445555555444444443
No 245
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.32 E-value=4.7e+02 Score=25.20 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=10.3
Q ss_pred cccHHHHHHHHHHhHHHH
Q 011939 389 NDDKSEVEELKRESAIAL 406 (474)
Q Consensus 389 ~edkaEVe~LKres~k~r 406 (474)
..|-+.|+.|+++...+.
T Consensus 131 ~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 131 ENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 345566666666655444
No 246
>PF13514 AAA_27: AAA domain
Probab=31.83 E-value=9.7e+02 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHh
Q 011939 275 HAELERARLQVNQLIQEQRSDQSEISYLMKCF 306 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E~~s~~~eie~l~Kql 306 (474)
..+|+.++..+..+..........+...+..+
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 648 (1111)
T PF13514_consen 617 AEELRAARAELEALRARRAAARAALAAALAAL 648 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555555555555444
No 247
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.81 E-value=1e+03 Score=29.09 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=38.2
Q ss_pred hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 011939 245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA 324 (474)
Q Consensus 245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa 324 (474)
+|..+++.-|.|+| .+-.. +-.++..=|--.+....+. +-+-++--+++++++.-+.-...--|.+..+
T Consensus 713 ~~~~~vl~~Lara~-y~~~~-----~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~s~lr~~k~t~eev~~a 781 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAW-YEAGK-----LQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAESILRLEKRTLEEVLEA 781 (1018)
T ss_pred cCCHHHHHHHHHHH-HHhhh-----HHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 46789999999999 33221 2333322222222222221 1334566667777776655444455555555
Q ss_pred HHHHH
Q 011939 325 IESIA 329 (474)
Q Consensus 325 i~slk 329 (474)
++.++
T Consensus 782 ~~~le 786 (1018)
T KOG2002|consen 782 VKELE 786 (1018)
T ss_pred HHHHH
Confidence 55433
No 248
>PRK09039 hypothetical protein; Validated
Probab=31.73 E-value=6.2e+02 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=28.3
Q ss_pred HhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 425 ERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 425 ERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~s 458 (474)
..+|.-|.+++....+....++.|..+|+.-|..
T Consensus 154 a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 154 AALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888999999999999888854
No 249
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=31.66 E-value=1.1e+03 Score=29.54 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=52.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH-----------------HhHHHHHHhHhh
Q 011939 360 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE-----------------KEREMIQVADVL 422 (474)
Q Consensus 360 ~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~E-----------------eER~MLqmAEvW 422 (474)
+-.++.++|++.+.+...+.+..+.-..|.++....+..-.--......+. ..-++.-+.+-.
T Consensus 915 l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l 994 (1294)
T KOG0962|consen 915 LEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKI 994 (1294)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888887777777777777766665544332221111111 122233333344
Q ss_pred hHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 011939 423 REERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS 456 (474)
Q Consensus 423 REERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL 456 (474)
+.-..+-++.++-+.+-.-.+.+..+.-|+..|.
T Consensus 995 ~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld 1028 (1294)
T KOG0962|consen 995 RNQYQRERNLKDNLTLRNLERKLKELERELSELD 1028 (1294)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555665555444455555555554443
No 250
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.62 E-value=5.5e+02 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=22.7
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Q 011939 338 LRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-RVVIEQVCDEL 384 (474)
Q Consensus 338 ~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa-RellE~vCDEL 384 (474)
.++.+|.++.|+.+ ++.....+|+.|+..+.. -+-|..+||.|
T Consensus 155 t~k~leK~~~k~~k----a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 155 TQREIEKAAVKSKK----ATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777666655 344456666666544331 12344555544
No 251
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=31.38 E-value=1.4e+02 Score=30.52 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhh-hhhHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVE 322 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~ 322 (474)
+.-.+.|+++....|+.|..|......-.+..+++|.+++..|- +...+++.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 55677789999999999999999999999999999999999998 44555554
No 252
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.24 E-value=2.3e+02 Score=32.74 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=11.3
Q ss_pred HHhhhcccHHHHHHHHHHhHHHH
Q 011939 384 LARDINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 384 LAkeI~edkaEVe~LKres~k~r 406 (474)
|--+|.++...+|+||+...+.+
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q 127 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQ 127 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhH
Confidence 34445555555555555544433
No 253
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=30.88 E-value=5.7e+02 Score=25.77 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 011939 443 AAVDKLRSQLE 453 (474)
Q Consensus 443 s~ldkL~~elE 453 (474)
...+.|..||+
T Consensus 284 ~~~~~l~~ei~ 294 (297)
T PF02841_consen 284 EEAEKLQKEIQ 294 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444555554
No 254
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=30.81 E-value=9.6e+02 Score=28.40 Aligned_cols=68 Identities=26% Similarity=0.268 Sum_probs=37.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011939 306 FAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRAR 374 (474)
Q Consensus 306 laEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaR 374 (474)
+.+||..-+..+.+.-++ |-.=+++-..|+|+++..+.--++.-+|=..-|--..++-|+.|+++++.
T Consensus 270 ~leeKrlk~~~~~eek~~-~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 270 VLEEKRLKEKEQKEEKKA-IKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 455554433333333222 22233444556666666666666666666666666666667777776655
No 255
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.55 E-value=1.6e+02 Score=23.17 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYL 302 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l 302 (474)
+.-+..++.|+...+.+|.+|.++....+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777778888888888877777776666666
No 256
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.47 E-value=6e+02 Score=25.90 Aligned_cols=124 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 350 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~ 350 (474)
+.+++.|++--..+|..++.+-+..+..++..-.++ ..+-..+|.......++.+++.+..=..-=.++.-.-.+|.
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 397 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~ 397 (474)
+++.+.+..+.+.-+++...+.+=+.-...-++=-.++..-++++.+
T Consensus 124 ~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 124 KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 257
>PRK14163 heat shock protein GrpE; Provisional
Probab=30.40 E-value=5.7e+02 Score=25.63 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 333 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 333 (474)
+..|+.+|+..+..+.+|...-.....+++.|.|....|+..-+.--.+++-..|-.+-+.|+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLe 104 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVG 104 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 456778888888888888877788888999999999888866555555555555555555554
No 258
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=30.07 E-value=2.2e+02 Score=23.15 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERK 337 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK 337 (474)
.-+..++.++..++..+..++.-..-+...|+.+++.+.+-...- .......+-.+.+.|.-|-+
T Consensus 59 ~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l----~~~~~~~~~~~~~~LtpeQR 123 (125)
T PF13801_consen 59 QEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAEL----RQERLEHLLEIRAVLTPEQR 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCHHHh
Confidence 347788888888888888888887878888887777776654332 23333344445555554433
No 259
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=29.90 E-value=5.2e+02 Score=30.51 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhHHHH
Q 011939 321 VEAAIESIAGELEVER 336 (474)
Q Consensus 321 i~aai~slk~ELe~ER 336 (474)
+...|+-|+.|.+.|=
T Consensus 460 L~e~IeKLk~E~d~e~ 475 (762)
T PLN03229 460 LNEMIEKLKKEIDLEY 475 (762)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345666666666553
No 260
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=29.25 E-value=5.4e+02 Score=24.98 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh----hhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 275 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN----KEREVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs----KE~eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
=.||++.|.+|++.+.+-..+- +...|+++|...+-+.++ .-..-|-++=..|++.|....-.-..+...|.
T Consensus 71 F~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~k 146 (157)
T PF04778_consen 71 FNELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNK 146 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3689999999999999985554 566888888887765443 22233444444455555443333333333333
No 261
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.18 E-value=5.5e+02 Score=25.04 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=53.1
Q ss_pred hhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHH
Q 011939 244 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEA 323 (474)
Q Consensus 244 L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~a 323 (474)
+-+.-=|+-+|+.+. ++-+..=|+.=+..|..-+.+-...+.+.+.+..+..+.-..=+.+-++.+..
T Consensus 60 ~I~FliL~~lL~k~~------------~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 60 AITFGLFYLFMSRVI------------LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666776653 33344447777888888888888888888888888887776666666666665
Q ss_pred HHHHHHHHhHHH
Q 011939 324 AIESIAGELEVE 335 (474)
Q Consensus 324 ai~slk~ELe~E 335 (474)
+....+.+.+.+
T Consensus 128 Ar~ea~~~~e~~ 139 (204)
T PRK09174 128 AREAAKAKAEAE 139 (204)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 262
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.12 E-value=6.3e+02 Score=25.71 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=56.3
Q ss_pred hchhHHHHHHHHhHHH-HH-HhhhhhHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHhHHHHHHHHHHHHHH
Q 011939 294 SDQSEISYLMKCFAEE-KA-AWKNKEREVVEAAIESIAGELEVERKLRR-----------RFESLNKKLGKELAETKHSL 360 (474)
Q Consensus 294 s~~~eie~l~KqlaEE-K~-awKsKE~eki~aai~slk~ELe~ERK~Rr-----------r~E~lN~KL~~ELaE~Kss~ 360 (474)
..-++-++|-+++..| .. +.|..-.-| ++|++.|+..--+|..+-+ +.-.-|..+-.|...+=-..
T Consensus 32 mL~KKqe~Le~ki~~e~e~~A~k~~tkNK-R~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~ 110 (221)
T KOG1656|consen 32 MLEKKQEFLEKKIEQEVENNARKYGTKNK-RMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 3345567899999888 33 566555533 7899999888777776532 22222444555555555555
Q ss_pred HHHHhHH-------------HHHHHHHHHHHHHHHHHHhhhc
Q 011939 361 LKAVKDL-------------DTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 361 ~~alkel-------------E~ERKaRellE~vCDELAkeI~ 389 (474)
.+|||-. ..=+-..++.+++.|-+..-||
T Consensus 111 A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg 152 (221)
T KOG1656|consen 111 AKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVG 152 (221)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5555432 2234445666666666666555
No 263
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=28.76 E-value=5.7e+02 Score=25.14 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 397 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~ 397 (474)
..-+..++..+..+.+.-=. .|..++..|..+-.-+....+++|+.||. +.+-.-.+.+.+.+-.+.++.
T Consensus 60 ~gs~~~a~~~il~~~e~lA~-------~h~~~a~~L~~~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leK 129 (234)
T cd07652 60 QGSFSNAYHSSLEFHEKLAD-------NGLRFAKALNEMSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEK 129 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHH
Confidence 34455666777666554333 34455555555555567788888888886 344444667777777888888
Q ss_pred HHHHhHHHHHHHHHhHHH-------H----HHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 398 LKRESAIALEEVEKEREM-------I----QVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 398 LKres~k~reE~EeER~M-------L----qmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
-|..-...++|+|.=|.- . ...-.=-||-.+-|..+|+.+.-.+....+.++.++..
T Consensus 130 AK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~ 197 (234)
T cd07652 130 AKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYASKVNAAQALRQELLS 197 (234)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887632211 0 01111246677778889998888888888888877753
No 264
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.64 E-value=1.1e+02 Score=27.86 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=28.6
Q ss_pred cccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011939 236 RLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 293 (474)
Q Consensus 236 r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~ 293 (474)
++++.+.+|+..++++...... + .....+..+++.-..+|.+|++...
T Consensus 51 ~lr~~G~sL~eI~~~l~~~~~~----~------~~~~~~~~~~~~l~~~i~~Le~~l~ 98 (134)
T cd04779 51 HLKGQRLSLAEIKDQLEEVQRS----D------KEQREVAQEVQLVCDQIDGLEHRLK 98 (134)
T ss_pred HHHHCCCCHHHHHHHHHhhccc----c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888899888877654431 0 1233455556666666666655443
No 265
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.48 E-value=1.3e+02 Score=33.96 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhh------HH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRR------FE 343 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr------~E 343 (474)
.+..|..|+.++...|.++..........+..| |-+.+-=.||.|-+++.+.+.-.|...-=..-.- ++
T Consensus 372 ~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RL-----erq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~ 446 (722)
T PF05557_consen 372 EIQELEQEKEQLLKEIEELEASLEALKKLIRRL-----ERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIE 446 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHH-------HHHHHHHHhHHHHHHHHHhHHHH
Q 011939 344 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKS-------EVEELKRESAIALEEVEKEREMI 416 (474)
Q Consensus 344 ~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edka-------EVe~LKres~k~reE~EeER~ML 416 (474)
.+...+-..++++...+..+.+++..-+.....++.--.-+.....+... ++..|+.+...+..|++.=+.=+
T Consensus 447 ~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~ 526 (722)
T PF05557_consen 447 DLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQEL 526 (722)
T ss_dssp -----------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhhhHH------------hh-hhhhhHhhhhhhhhhHHHHHHHHHHHHHHh
Q 011939 417 QVADVLREE------------RA-QIKLSEAKYQLEEKNAAVDKLRSQLEAFSR 457 (474)
Q Consensus 417 qmAEvWREE------------RV-QMKL~eAk~~lEeK~s~ldkL~~elE~FL~ 457 (474)
.+.|...+- || ||+--=+-.+..-|-+.|+.|+.|.+.-+.
T Consensus 527 ~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 527 EELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHH
No 266
>PRK10698 phage shock protein PspA; Provisional
Probab=28.19 E-value=5.9e+02 Score=25.07 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-------------
Q 011939 321 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARD------------- 387 (474)
Q Consensus 321 i~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAke------------- 387 (474)
|.-.|+.|.+.|..=|+.--+.=...+++.+++.+....+.+ -+++++..|..==++||++
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~------~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE------WQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred -----hcccHHHHHHHHHHhHHHHHHHHH
Q 011939 388 -----INDDKSEVEELKRESAIALEEVEK 411 (474)
Q Consensus 388 -----I~edkaEVe~LKres~k~reE~Ee 411 (474)
+....+.++.|+....++...+++
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 267
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.19 E-value=4.8e+02 Score=24.02 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=18.3
Q ss_pred HHHHHhhhcccHHHHHHHHHHh-HHHHHHHHHhHHHHHHhH
Q 011939 381 CDELARDINDDKSEVEELKRES-AIALEEVEKEREMIQVAD 420 (474)
Q Consensus 381 CDELAkeI~edkaEVe~LKres-~k~reE~EeER~MLqmAE 420 (474)
-..++..+...++....++.+. ..+ +-|-|=.|+=|++
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~--q~EldDLL~ll~D 95 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEA--QSELDDLLVLLGD 95 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHh
Confidence 3444444555555555555443 112 2344556666665
No 268
>PLN02372 violaxanthin de-epoxidase
Probab=28.18 E-value=7.3e+02 Score=27.65 Aligned_cols=54 Identities=31% Similarity=0.394 Sum_probs=39.0
Q ss_pred HHHHHHHhHH-HHHHhhhHHHHhHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011939 325 IESIAGELEV-ERKLRRRFESLNKK--LGKELAETKHSLLKAVKDLDTEKRARVVIEQV 380 (474)
Q Consensus 325 i~slk~ELe~-ERK~Rrr~E~lN~K--L~~ELaE~Kss~~~alkelE~ERKaRellE~v 380 (474)
+..+..||+. -+++++..+.+=.+ |+..|.+++.-..+++++|-+|-+ ++++++
T Consensus 381 ~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~--~~l~~~ 437 (455)
T PLN02372 381 ARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEK--ELLEKL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHH
Confidence 3345555654 46788888888888 999999999999999997766543 444443
No 269
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.09 E-value=5.8e+02 Score=25.79 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 011939 375 VVIEQVCDELARDINDDKSEVEELKRESAIALE 407 (474)
Q Consensus 375 ellE~vCDELAkeI~edkaEVe~LKres~k~re 407 (474)
.=||+-...+-..|...+.||+.|+.+..+++|
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334554555566666777777777777766654
No 270
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.79 E-value=6.8e+02 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=10.7
Q ss_pred HHHHHHhhhcccHHHHHHHHHH
Q 011939 380 VCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 380 vCDELAkeI~edkaEVe~LKre 401 (474)
+-..+-++|.++.+|.+.+.+|
T Consensus 114 ~k~~~~~ei~k~r~e~~~ml~e 135 (230)
T PF03904_consen 114 LKNIAQNEIKKVREENKSMLQE 135 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555
No 271
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.64 E-value=6.3e+02 Score=25.23 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 322 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~ 322 (474)
+.+|+.+|......+.+|...-.....+.+.+.|..+.|+...+.--.+++-
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~ 114 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVL 114 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555556666666666665444443333333
No 272
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=27.30 E-value=3.3e+02 Score=27.40 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHH-HHHHHHHHHhHHH
Q 011939 333 EVERKLRRRFESLNKKLGKELAE-TKHSLLKAVKDLD 368 (474)
Q Consensus 333 e~ERK~Rrr~E~lN~KL~~ELaE-~Kss~~~alkelE 368 (474)
.+.+.+|+....+|.+|..|+.+ +..-+.++-+.|.
T Consensus 101 ~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~ 137 (234)
T cd07686 101 KDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYR 137 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33466666667777777776655 4444545444443
No 273
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.23 E-value=5.9e+02 Score=24.81 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=18.5
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 011939 338 LRRRFESLNKKLGKELAETKHSLLKAVKDLDT 369 (474)
Q Consensus 338 ~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ 369 (474)
.|+.++....|+.+.+...-..+.++-+.|+.
T Consensus 100 ~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~ 131 (239)
T cd07647 100 ERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQ 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665555555555555543
No 274
>PRK12704 phosphodiesterase; Provisional
Probab=27.21 E-value=9e+02 Score=26.91 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=5.0
Q ss_pred HHHHHHHHhHHH
Q 011939 324 AIESIAGELEVE 335 (474)
Q Consensus 324 ai~slk~ELe~E 335 (474)
-+...+.|++.|
T Consensus 65 E~~~~R~Ele~e 76 (520)
T PRK12704 65 EIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 275
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=27.20 E-value=5.4e+02 Score=24.33 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939 274 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353 (474)
Q Consensus 274 Lk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL 353 (474)
+..=|+.=+..|...+.+-...+.+.+.+..++.+.-..++..-.+.+..+......+.+.. .+..+....+.+
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~------~~~A~~e~~~~~ 129 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA------IAKADAEIAAKA 129 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 33346777778888888888888888888888888877777666666666654444443332 223344455555
Q ss_pred HHHHHHHHH
Q 011939 354 AETKHSLLK 362 (474)
Q Consensus 354 aE~Kss~~~ 362 (474)
++++.-+.+
T Consensus 130 aea~~~I~~ 138 (181)
T PRK13454 130 AESEKRIAE 138 (181)
T ss_pred HHHHHHHHH
Confidence 555544333
No 276
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=26.96 E-value=5.9e+02 Score=27.07 Aligned_cols=47 Identities=28% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHhHHHHHHHHHHHHH-HHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 011939 361 LKAVKDLDTEKRARVVIE-QVCDELARDINDDKSEVEELKRESAIALE 407 (474)
Q Consensus 361 ~~alkelE~ERKaRellE-~vCDELAkeI~edkaEVe~LKres~k~re 407 (474)
.++++.||+=-.+++-+| ++-..|+.=+++-|+.|+.|++....+.+
T Consensus 161 ~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 161 NKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 344444554444444443 46667777788888888888887666553
No 277
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.92 E-value=1.3e+02 Score=29.86 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVV 321 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki 321 (474)
+.+|..|+++-++. -...+...+.....|..|+..|.. |.|||
T Consensus 133 ~~~l~~e~erL~ae-------L~~er~~~e~q~~~Fe~ER~~W~e-EKekV 175 (202)
T PF06818_consen 133 LGSLRREVERLRAE-------LQRERQRREEQRSSFEQERRTWQE-EKEKV 175 (202)
T ss_pred chhHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55566666655543 344455678889999999999986 56665
No 278
>PRK01156 chromosome segregation protein; Provisional
Probab=26.78 E-value=1e+03 Score=27.42 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYL 302 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l 302 (474)
-++..+..+|..-...|.+|..+......+++.+
T Consensus 469 e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~ 502 (895)
T PRK01156 469 HIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777777777777776665555544443
No 279
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.72 E-value=9.3e+02 Score=26.90 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCD 382 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCD 382 (474)
+||.+-+..|.++.--|+.+++.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 56677777788877777777777777766655
No 280
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.65 E-value=1.4e+02 Score=22.91 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 011939 377 IEQVCDELARDINDDKSEVEELKRESAIALEEVEK 411 (474)
Q Consensus 377 lE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee 411 (474)
||.-||-|-......+++-+.|++|-.+++.|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777776666544
No 281
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.65 E-value=5e+02 Score=23.75 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFES 344 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~ 344 (474)
.=+.+|..+|+-.-..+.+|.+++. ++...+..|-.+..+.-.+ -.-+.+-|.++...|+.|+-.+-.++.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd----~L~~~l~~L~~q~~s~~qr-~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKD----QLRNALQSLQAQNASRNQR-IAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999977654 4777777777776654333 344677777777777776655534443
No 282
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=26.60 E-value=1.1e+03 Score=27.72 Aligned_cols=103 Identities=23% Similarity=0.320 Sum_probs=62.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---cccHHHHHHHHHHhHHHHHHHHH------
Q 011939 341 RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI---NDDKSEVEELKRESAIALEEVEK------ 411 (474)
Q Consensus 341 r~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI---~edkaEVe~LKres~k~reE~Ee------ 411 (474)
-+|.--.+|-.||.|.|..=.+.++||-.---... -|=|.| +.-.-|.|.||+|..++.||.+.
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi-------slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARLLQDYSELEEENI-------SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555567888999998888888888743222222 233443 34456888888888877666543
Q ss_pred -hHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 412 -EREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 412 -ER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~s 458 (474)
--+.=.||| -+|.||=-+|..=-.+=.-|+-||..|+..
T Consensus 146 e~~rLk~iae--------~qleEALesl~~EReqk~~LrkEL~~~~~~ 185 (717)
T PF09730_consen 146 EAARLKEIAE--------KQLEEALESLKSEREQKNALRKELDQHLNI 185 (717)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 222333444 345566555544445555677788777654
No 283
>PTZ00121 MAEBL; Provisional
Probab=26.51 E-value=1.5e+03 Score=29.42 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHH
Q 011939 279 ERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKH 358 (474)
Q Consensus 279 ~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Ks 358 (474)
+.+|....+-.+..+..+.+-..-.-...-+-.++|. ++--++-++--.+|.-..+..|+.=+..=..-++.+.+++
T Consensus 1112 ee~r~~ee~~~r~e~arr~eeARrae~~Rr~EeaRKr--EeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~R- 1188 (2084)
T PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA--EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR- 1188 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhh
Q 011939 359 SLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQ 437 (474)
Q Consensus 359 s~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~ 437 (474)
-..+++-.|.+|++.+.=.. |.++.+.+-+...++.+.+.++..+|....+.-...||.=|-..---++.+|+++
T Consensus 1189 -r~EElRraEEaRkaEEaRRl---EE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~Eear~a 1263 (2084)
T PTZ00121 1189 -KAEELRKAEDARKAEAARKA---EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263 (2084)
T ss_pred -HHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 284
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=26.47 E-value=6.8e+02 Score=25.28 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQE 291 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E 291 (474)
+..++++|+.+++++..+...
T Consensus 88 l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 88 VAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655433
No 285
>PRK04654 sec-independent translocase; Provisional
Probab=26.44 E-value=3.2e+02 Score=27.59 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011939 324 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK 371 (474)
Q Consensus 324 ai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ER 371 (474)
.+.++++|+++|=++.. +...-.++..++.+++..+++.+++++..-
T Consensus 42 ~~~~vk~El~~El~~~E-Lrk~l~~~~~~i~~~~~~lk~~~~el~q~a 88 (214)
T PRK04654 42 QWDSVKQELERELEAEE-LKRSLQDVQASLREAEDQLRNTQQQVEQGA 88 (214)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555543321 111112334456666666666666666433
No 286
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.15 E-value=9.5e+02 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHh
Q 011939 374 RVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKE 412 (474)
Q Consensus 374 RellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeE 412 (474)
++-|+.+-.=|-..|..++..|+.+-.+..+.+..+.++
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~q 173 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHE 173 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666655555555444443
No 287
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.06 E-value=1.5e+02 Score=36.06 Aligned_cols=63 Identities=24% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHhhhcccHHHHHHHHHHhHH-----H---HHH-HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHH
Q 011939 380 VCDELARDINDDKSEVEELKRESAI-----A---LEE-VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRS 450 (474)
Q Consensus 380 vCDELAkeI~edkaEVe~LKres~k-----~---reE-~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~ 450 (474)
=||+=|+-|+|.+.|||.|+..... + .|- -|-|+.|-+|.-.| |||.-.++.+..
T Consensus 358 NedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~tw----------------EEkl~ktE~in~ 421 (1714)
T KOG0241|consen 358 NEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTW----------------EEKLRKTEEINQ 421 (1714)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHH----------------HHHHHHHHHHHH
Confidence 3788888888888888877765443 1 111 12356666666555 566666666666
Q ss_pred HHHHHHhh
Q 011939 451 QLEAFSRN 458 (474)
Q Consensus 451 elE~FL~s 458 (474)
|+++-|..
T Consensus 422 erq~~L~~ 429 (1714)
T KOG0241|consen 422 ERQAQLES 429 (1714)
T ss_pred HHHHHHHH
Confidence 66666554
No 288
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.97 E-value=6.4e+02 Score=24.74 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
.++..+--..++.+...+++..+..+..+++++.+-.+ .....+-++.+..|++.=..-.++++..-.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e------------~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 13 ASSAAAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDE------------KQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDD 391 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~ed 391 (474)
.+-.|+++.+..+...-+- ++.-.-+|.+++|+|-.-|..|
T Consensus 81 ~q~~el~~L~~qi~~~~~~---~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 81 SQEQELASLEQQIEQIEET---RQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
No 289
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.80 E-value=2.3e+02 Score=29.81 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhccC
Q 011939 383 ELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGK 462 (474)
Q Consensus 383 ELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk~~~ 462 (474)
|--..+-|-+.||++||....+++ |-|-||=-. -+||+++|-|=-..+.+|+.=|||.=.+=..+
T Consensus 79 es~~~l~dRetEI~eLksQL~RMr-------------EDWIEEECH--RVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMR-------------EDWIEEECH--RVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q ss_pred Ccccc
Q 011939 463 RKRTQ 467 (474)
Q Consensus 463 ~~~~~ 467 (474)
+++-|
T Consensus 144 DkGiQ 148 (305)
T PF15290_consen 144 DKGIQ 148 (305)
T ss_pred hhhHH
No 290
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.68 E-value=6.5e+02 Score=24.78 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhh
Q 011939 349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQ 428 (474)
Q Consensus 349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQ 428 (474)
-+++++-+..+|...++|+...-..-+++...=.+|+..+++....-+.|..+. ++.|++-=+-|++|=++
T Consensus 31 ag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~---------~~~l~~~L~~F~k~dl~ 101 (200)
T cd07638 31 AGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQA---------QRSIKAQLQTFVKEDLR 101 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhH
Confidence 566666777777777777765545555666666667766665544444443322 23344444555555554
Q ss_pred hhhhHhhhh
Q 011939 429 IKLSEAKYQ 437 (474)
Q Consensus 429 MKL~eAk~~ 437 (474)
+.-|+|-.
T Consensus 102 -~vke~kk~ 109 (200)
T cd07638 102 -KFKDAKKQ 109 (200)
T ss_pred -HHHHHHHH
Confidence 34444433
No 291
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.58 E-value=1.1e+03 Score=27.25 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=34.1
Q ss_pred cccccccccccch--------hchHHHHHHHHhhcCCCCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 011939 232 GVKTRLKDVSNAL--------TTSKELLKIINRMWGQEDRPS---SSMSLVSALHAELERARLQVNQLIQEQRSDQS 297 (474)
Q Consensus 232 ~~k~r~~e~~~~L--------~TS~ELlkVlnriw~leeq~~---s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~ 297 (474)
+++++|.+...++ +|..+|.--|+- .+..+. +.==..++|+.-+...++-+.+++.-.+...+
T Consensus 221 Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e---~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 221 ELKHRLEKYFTSIANEIEDLKKTNRELEEMINE---REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 4888877766544 344566555553 333332 11122344666666777766666655554333
No 292
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.50 E-value=3.7e+02 Score=27.21 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK 310 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK 310 (474)
.|..+|...+.+|.+|...-....-+.+.+.|+...|+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~ 118 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQ 118 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776666666677777777777776
No 293
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.42 E-value=1e+03 Score=26.93 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=34.2
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHHhH
Q 011939 336 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARD---INDDKSEVEELKRESA 403 (474)
Q Consensus 336 RK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAke---I~edkaEVe~LKres~ 403 (474)
..++.+++.++..+..|+..+..++.. +++..+.....|+.--+++-.. +...+.|...|.|+.+
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~~~~~~~~---~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQKITKSLLM---QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence 346677777777777777766555433 3443333333344333333322 3344556666666543
No 294
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.41 E-value=7e+02 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.151 Sum_probs=7.6
Q ss_pred HHHHHHHhHHHHH
Q 011939 325 IESIAGELEVERK 337 (474)
Q Consensus 325 i~slk~ELe~ERK 337 (474)
.....++|..||.
T Consensus 37 ~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 37 YRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3344566777774
No 295
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.34 E-value=6.2e+02 Score=24.38 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=5.2
Q ss_pred hchHHHHHHH
Q 011939 245 TTSKELLKII 254 (474)
Q Consensus 245 ~TS~ELlkVl 254 (474)
.+-+|+|+.|
T Consensus 30 ~~VKdvlq~L 39 (188)
T PF03962_consen 30 MSVKDVLQSL 39 (188)
T ss_pred hhHHHHHHHH
Confidence 3445655555
No 296
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.98 E-value=6.2e+02 Score=24.26 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939 344 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 344 ~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~ 389 (474)
...+++.+|..+++. +-.+.=.+.||+ |+|-|-+.+.
T Consensus 50 N~rkR~~kE~e~~~~--------~a~~~~~~~lLp-v~DnlerAl~ 86 (172)
T PRK14147 50 NQRKRIARDVEQARK--------FANEKLLGELLP-VFDSLDAGLT 86 (172)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHhh-hhhHHHHHHh
Confidence 334455555554332 222333444443 6666666553
No 297
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=24.51 E-value=1.3e+03 Score=27.97 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=20.4
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939 305 CFAEEKAAWKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 305 qlaEEK~awKsKE~eki~aai~slk~ELe~ 334 (474)
++.+|+..|-..|+.+|.+++..-..-+.+
T Consensus 715 ~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~ 744 (988)
T KOG2072|consen 715 RQEEDRELYEAREKQRIEAAIAERESAVKD 744 (988)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888777655444444
No 298
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.50 E-value=6.2e+02 Score=24.10 Aligned_cols=75 Identities=21% Similarity=0.175 Sum_probs=46.4
Q ss_pred cchhch--HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhH
Q 011939 242 NALTTS--KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER 318 (474)
Q Consensus 242 ~~L~TS--~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ 318 (474)
|.|.++ +|+=+++.+-- . |--..=|++|=..-..|+-+.++-.+...|-..-+.+.+.|..+...+|...+..|.
T Consensus 2 y~lA~~Ig~EfE~lId~~G-~-e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 2 YDLASSIGKEFERLIDRYG-E-EAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEE 78 (158)
T ss_pred hHHHHHHHHHHHHHHHHhC-h-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 67777776652 2 222244566555556677777776666666666666777777777777777665554
No 299
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.04 E-value=1.5e+03 Score=28.25 Aligned_cols=181 Identities=24% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
+++..-+..|+..++++|+.|-.--.....++..|.-.+.++|-- .....-...-+...++.=+..--.+|.-|.
T Consensus 473 ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ-----~kt~~~qye~~~~k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 473 LSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQ-----YKTCDIQYELLSNKLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHH--------------------HHHHHHhHHHHHHHHHHHHHHH--HHHHHhhhcccHHHHHHHHHHhHHH
Q 011939 348 KLGKELAETKH--------------------SLLKAVKDLDTEKRARVVIEQV--CDELARDINDDKSEVEELKRESAIA 405 (474)
Q Consensus 348 KL~~ELaE~Ks--------------------s~~~alkelE~ERKaRellE~v--CDELAkeI~edkaEVe~LKres~k~ 405 (474)
-|-+++.-.+. -..+++.-|+..|+-++.||.- --+++-.=-.++.-|+.|+..-.+.
T Consensus 548 ~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kl 627 (1195)
T KOG4643|consen 548 HLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKL 627 (1195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhh
Q ss_pred HHHHHHhHHHHHHhHhhhH---HhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939 406 LEEVEKEREMIQVADVLRE---ERAQIKLSEAKYQLEEKNAAVDKLRSQLE 453 (474)
Q Consensus 406 reE~EeER~MLqmAEvWRE---ERVQMKL~eAk~~lEeK~s~ldkL~~elE 453 (474)
..+-..=-+-....=+--. |=+|-||..-.+.|.-++.++.-+...+.
T Consensus 628 l~~Kkdr~ree~kel~~ekl~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~l 678 (1195)
T KOG4643|consen 628 LKEKKDRNREETKELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNIL 678 (1195)
T ss_pred cchhHHHHHHHHhhccccchhHHHHHHHHHhCchhhccccchhhhhhhhhh
No 300
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.80 E-value=5e+02 Score=24.34 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHh
Q 011939 284 QVNQLIQEQRSDQSEISYLMKCF 306 (474)
Q Consensus 284 rI~eL~~E~~s~~~eie~l~Kql 306 (474)
++.-++.+.-..+.+++.+.++.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433344444444443
No 301
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.64 E-value=4.7e+02 Score=22.64 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=39.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH---HHHhHHHHHHhhhhhHHHHHHHHH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYL---MKCFAEEKAAWKNKEREVVEAAIE 326 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l---~KqlaEEK~awKsKE~eki~aai~ 326 (474)
..+--|.-|++|++.-.-.-+.|.+|.+..++..+.| -.++.+|-..| +|+|++.+-
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W----QerlrsLLG 74 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW----QERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 3445677788888877777777777777666655555 45788888888 566666553
No 302
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.61 E-value=8.2e+02 Score=25.63 Aligned_cols=70 Identities=31% Similarity=0.403 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHh
Q 011939 347 KKLGKELAETKHSLLKAVKD---LDTEKRA-----------RVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKE 412 (474)
Q Consensus 347 ~KL~~ELaE~Kss~~~alke---lE~ERKa-----------RellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeE 412 (474)
+-|-.+|+|+..-|.+||-- |.+||-+ =+-||+..-++=+++.+---+++.+|+....++.|+++=
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666655532 3344332 223444445555556555556677777666665555444
Q ss_pred HHHH
Q 011939 413 REMI 416 (474)
Q Consensus 413 R~ML 416 (474)
|.-|
T Consensus 160 re~L 163 (302)
T PF09738_consen 160 REQL 163 (302)
T ss_pred HHHH
Confidence 4333
No 303
>PRK01919 tatB sec-independent translocase; Provisional
Probab=23.55 E-value=3.6e+02 Score=26.31 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhHHH
Q 011939 320 VVEAAIESIAGELEVE 335 (474)
Q Consensus 320 ki~aai~slk~ELe~E 335 (474)
+++.++.++++|+++|
T Consensus 38 k~Rr~~~d~K~ev~~E 53 (169)
T PRK01919 38 RAQRYINDVKAEVSRE 53 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666666655
No 304
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.38 E-value=7.4e+02 Score=24.60 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011939 364 VKDLDTEKRARVVIEQVCDELARDIN 389 (474)
Q Consensus 364 lkelE~ERKaRellE~vCDELAkeI~ 389 (474)
-..|+...+..+=|-.+||||--.++
T Consensus 181 e~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 181 EESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777778899999976654
No 305
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=23.38 E-value=1e+03 Score=26.15 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=74.7
Q ss_pred ccccccccccchhchHHHHHHH----HhhcCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939 233 VKTRLKDVSNALTTSKELLKII----NRMWGQEDRPS-SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 307 (474)
Q Consensus 233 ~k~r~~e~~~~L~TS~ELlkVl----nriw~leeq~~-s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla 307 (474)
+|.++.++.--+++.+.-++-+ .++|.++.... -...-+..|+.-|..+..-|. .+.......+--|+++..
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~---~~~~~~~~~~~~fl~rtl 190 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK---REDGNAITAVVEFLKRTL 190 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHH
Confidence 4566777777777777777777 67764333211 001112666665555543332 222222223333333333
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHh
Q 011939 308 EEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD-TEKRARVVIEQVCDELAR 386 (474)
Q Consensus 308 EEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE-~ERKaRellE~vCDELAk 386 (474)
+-. .+...+......+. .+-.+.+....+..+..-+..++-..+.+|.. |. +..+.-..-|++-+.|=.
T Consensus 191 ~~e-----~~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~----Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 191 KKE-----IERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAELQQ----YKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHhcCHHHHHHHHHh
Confidence 322 22222332222222 23333333334444444444444444444433 33 222333333444444444
Q ss_pred hhcc--cH-----HHHHHHHHHhHHHHHHHHH
Q 011939 387 DIND--DK-----SEVEELKRESAIALEEVEK 411 (474)
Q Consensus 387 eI~e--dk-----aEVe~LKres~k~reE~Ee 411 (474)
+... .. .|++.|+.|..-+++|+..
T Consensus 261 ~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 261 GCLEEGFDSSTNSIELEELKQERDHLQEEIQL 292 (511)
T ss_pred cccccccccccchhcchhhHHHHHHHHHHHHH
Confidence 2111 11 4577888888877777543
No 306
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.28 E-value=1e+03 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHHH-HHH---HhHHHHHHhHhh
Q 011939 377 IEQVCDELARDINDDKSEVEELKRESAIALE-EVE---KEREMIQVADVL 422 (474)
Q Consensus 377 lE~vCDELAkeI~edkaEVe~LKres~k~re-E~E---eER~MLqmAEvW 422 (474)
+-.-|+.+.+++.+.+.-+..+|----|+|| |++ +|+..|.+-|-.
T Consensus 251 v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL 300 (424)
T PF03915_consen 251 VAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDL 300 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777777778888888888888887 554 688888777654
No 307
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=23.23 E-value=5.6e+02 Score=29.35 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=20.7
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 011939 336 RKLRRRFESLNKKLGKELAETKH----SLLKAVKDLDTEK 371 (474)
Q Consensus 336 RK~Rrr~E~lN~KL~~ELaE~Ks----s~~~alkelE~ER 371 (474)
.++|+..|.++..-.+||.+... .+..--+.||.+.
T Consensus 463 ~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~ 502 (588)
T KOG3612|consen 463 EKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKH 502 (588)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 36677777777777777754433 3334444454444
No 308
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.22 E-value=1.3e+03 Score=27.54 Aligned_cols=166 Identities=22% Similarity=0.253 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939 274 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353 (474)
Q Consensus 274 Lk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL 353 (474)
-+.|||..-.+|+.|..--.. ..-.-..-++.+|.+..-..-+..|=.-|+-.++.|.-|..|.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~lea----------------Reaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~ 407 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEA----------------REAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEY 407 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHH
Confidence 588999999898888654431 1111222344566666666667777777788888888888887
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhhcccH-HHHHHHHHHhHHHHHHHH-HhHHHHHHhHhhhHHhhhhh
Q 011939 354 AETKHSLLKAVKDLDTEKRA-RVVIEQVCDELARDINDDK-SEVEELKRESAIALEEVE-KEREMIQVADVLREERAQIK 430 (474)
Q Consensus 354 aE~Kss~~~alkelE~ERKa-RellE~vCDELAkeI~edk-aEVe~LKres~k~reE~E-eER~MLqmAEvWREERVQMK 430 (474)
-.-=+.+-+-++-+=+||-+ |.-|-.+-+|||-.|-.|+ +|-.++-+. +..|-| --+..||=+-.-+-=|.+.|
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~---lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQ---LMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777777764 4456667788887776643 333333222 222222 23556666665555555544
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 011939 431 LSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 460 (474)
Q Consensus 431 L~eAk~~lEeK~s~ldkL~~elE~FL~sk~ 460 (474)
-+ ...++.|+..+-+|..|++..=....
T Consensus 485 e~--etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 485 EA--ETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred hh--hHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 33 33344455588888887765444333
No 309
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=23.20 E-value=1.4e+02 Score=33.43 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=26.7
Q ss_pred hcccHHHHHHHH----HHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhh
Q 011939 388 INDDKSEVEELK----RESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQL 438 (474)
Q Consensus 388 I~edkaEVe~LK----res~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~l 438 (474)
|.|..-=||+|| +|..+++.++|||..|- -|+||-..+-|-++
T Consensus 578 i~el~~ive~lk~~~~kel~kl~~dleeek~mr--------~~lemei~~lkka~ 624 (627)
T KOG4348|consen 578 IIELLCIVEALKKDHGKELEKLRKDLEEEKTMR--------SNLEMEIEKLKKAV 624 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHhhHHHHHHHh
Confidence 333333455554 44567777899998883 36778777666554
No 310
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.12 E-value=7.8e+02 Score=24.74 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh-hHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK-EREVVEAAIESIAGELEVERKLRRRFESLNKK 348 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK-E~eki~aai~slk~ELe~ERK~Rrr~E~lN~K 348 (474)
++.+.|.=|..=..-.+++.+-++..+ .|+...+|.-++++ -.+|+..++++|.+-=..|.-+..+.+.+-.-
T Consensus 113 ~~~~vKealtnR~~~~re~~qAq~~~~------~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~n 186 (230)
T cd07625 113 DAYVVKEALTNRHLLMRELIQAQQNTK------SKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGN 186 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444444455554444332 36667788777654 36799999999988777788888888888777
Q ss_pred HHHHHHH
Q 011939 349 LGKELAE 355 (474)
Q Consensus 349 L~~ELaE 355 (474)
|-.|+..
T Consensus 187 m~~E~~r 193 (230)
T cd07625 187 MLIERKE 193 (230)
T ss_pred HHHHHHH
Confidence 7777643
No 311
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.99 E-value=1.1e+03 Score=26.22 Aligned_cols=46 Identities=26% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhh
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN 315 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKs 315 (474)
+-..|...+++.+.++..+++.......+++.++..+.|+.-..-.
T Consensus 78 l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~ 123 (448)
T COG1322 78 LKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLA 123 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555555556666566665656666666666666666544433
No 312
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=22.77 E-value=7.7e+02 Score=24.60 Aligned_cols=135 Identities=22% Similarity=0.333 Sum_probs=68.6
Q ss_pred cccccchhchHHHHHHHHhhcCCCCC-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh
Q 011939 238 KDVSNALTTSKELLKIINRMWGQEDR-PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK 316 (474)
Q Consensus 238 ~e~~~~L~TS~ELlkVlnriw~leeq-~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK 316 (474)
.|...+..+|+||-.+|-+|-..--. ...--...++|..|| |..|+..-....+.|..+-|.+.-|.
T Consensus 54 a~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~l------i~pLe~k~e~d~k~i~~~~K~y~~E~------ 121 (223)
T cd07605 54 GELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGEL------ILPLEKKLELDQKVINKFEKDYKKEY------ 121 (223)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHHH------
Confidence 33333333667777777776411000 011112234444444 45566666677777777777776662
Q ss_pred hHHHHHHHHHHHHHHhH-------------HHHHHhhhHHHHhHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939 317 EREVVEAAIESIAGELE-------------VERKLRRRFESLNKKLGKELAE-TKHSLLKAVKDLDTEKRARVVIEQVCD 382 (474)
Q Consensus 317 E~eki~aai~slk~ELe-------------~ERK~Rrr~E~lN~KL~~ELaE-~Kss~~~alkelE~ERKaRellE~vCD 382 (474)
...++.|+-...||. .+-+++.-+|.+|.|-. ||.+ .+.++..|| +|..|+=.-+++..|-
T Consensus 122 --K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~-ele~~~~~~lr~al--~EERrRyc~lv~~~c~ 196 (223)
T cd07605 122 --KQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQK-ELEAFVSQGLRDAL--LEERRRYCFLVDKHCS 196 (223)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 222333333333332 23334445777777653 2222 223344443 4556666789999997
Q ss_pred HHHhhhc
Q 011939 383 ELARDIN 389 (474)
Q Consensus 383 ELAkeI~ 389 (474)
=+=.++.
T Consensus 197 v~~~e~~ 203 (223)
T cd07605 197 VAKHEIA 203 (223)
T ss_pred HHHHHHH
Confidence 6554444
No 313
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.74 E-value=4.7e+02 Score=25.27 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHh
Q 011939 345 LNKKLGKELAETKHSLLKAVK 365 (474)
Q Consensus 345 lN~KL~~ELaE~Kss~~~alk 365 (474)
.+.+++.+|..+--.|..|+.
T Consensus 71 a~~~~~~~LLpV~DnlerAl~ 91 (176)
T PRK14159 71 ANESFAKDLLDVLDALEAAVN 91 (176)
T ss_pred HHHHHHHHHhhHHhHHHHHHh
Confidence 445566666666555555544
No 314
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=22.66 E-value=1.2e+03 Score=27.05 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=45.1
Q ss_pred ccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 011939 237 LKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 303 (474)
Q Consensus 237 ~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~ 303 (474)
+.-..--|.|+++|-|=+.---++.|+- |-.|++..+-||.+|+.|++-+.-..+.+-+|.
T Consensus 578 ~eRLkmElst~kDlekG~Aeki~~me~E------i~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLt 638 (790)
T PF07794_consen 578 IERLKMELSTSKDLEKGYAEKIGFMEME------IGGLQADKQTARNQIHRLEQRREELSKRVMDLT 638 (790)
T ss_pred hhhhheeeccccchhhhhHhhhhhhhhh------hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667889999988665433576654 678899999999999999998865555555443
No 315
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.18 E-value=3.6e+02 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 368 DTEKRARVVIEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 368 E~ERKaRellE~vCDELAkeI~edkaEVe~LKre 401 (474)
++-|.++|-++.-|..|-+.-++.|..+.+|-+|
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544444444444444443
No 316
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.12 E-value=6.9e+02 Score=25.07 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHH-HHHHHHHHHhHHHHHHhhhHHH
Q 011939 275 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE-AAIESIAGELEVERKLRRRFES 344 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~-aai~slk~ELe~ERK~Rrr~E~ 344 (474)
..+|+.|..++++|.. +.+.+...+-.|+..|-..-.+.++ +.+..+...++.||+.=+-.|+
T Consensus 163 ~~~l~eA~~~e~~l~~-------k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~ 226 (230)
T cd07625 163 IRQLEEATKHEHDLSL-------KLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLER 226 (230)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554443 4556666666666666544344444 4455677777777776444444
No 317
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.09 E-value=7.7e+02 Score=27.16 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=79.6
Q ss_pred HhhhhhcccCCCCCCCCCCCCCCCccccccCCCCCCccccccchhhhhhccccCCC----CCCcCCcccccccccccCCC
Q 011939 149 RERVTRSLHSGSLPPHLSDPSHSPVSERMDRSGTGSHHRRSSSISQRLRLTESNGG----VLDSVSNASLMEVETRSRAQ 224 (474)
Q Consensus 149 r~~~~r~~~~~~l~~~l~dps~sp~s~r~~~~~~~s~rr~~ssl~q~~r~~d~~~~----al~~~s~as~mev~~~~~~~ 224 (474)
+|-+.+.....+|..|.++|..-|++ |+++. .++ .- .+.+||.. ..|+.|.-..|+|..+.|..
T Consensus 149 rDml~~Ld~~l~Lr~~fs~~~~D~fs-Rl~~~-~~s-------~E---~l~~Yy~~~V~V~~D~~sGIi~l~V~AF~Ped 216 (434)
T PRK15178 149 KEMMDRMEKELGFLSYFAQDDIALFS-RFHAP-LGI-------ND---DPYRYYLSKVSVAVDIQQGMLRLNVKARSAKQ 216 (434)
T ss_pred HHHHHHHHhcCCHHHHhcCCCCChhh-cCCCC-CCC-------HH---HHHHHHHhceEEeecCCCCeEEEEEEecCHHH
Confidence 56666666666788888888766776 55331 111 11 12233322 34777766667777775542
Q ss_pred CCC--Ccccc--------------------ccccccccccchhchHHHHHHHHhhcCCCCC---CCcchhHHHHHHHHHH
Q 011939 225 TPS--GSTVG--------------------VKTRLKDVSNALTTSKELLKIINRMWGQEDR---PSSSMSLVSALHAELE 279 (474)
Q Consensus 225 tps--~s~~~--------------------~k~r~~e~~~~L~TS~ELlkVlnriw~leeq---~~s~~SlvsaLk~EL~ 279 (474)
.-. ..-++ .+.-+.++.-.|.....-|-.+-.-+++.|- -.+.+.+|..|+.||-
T Consensus 217 A~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa 296 (434)
T PRK15178 217 AEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLA 296 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 200 00000 0011233333344444444444444455553 3467788999999999
Q ss_pred HHHHHHHHHHHHhh-------hchhHHHHHHHHhHHH
Q 011939 280 RARLQVNQLIQEQR-------SDQSEISYLMKCFAEE 309 (474)
Q Consensus 280 ~AR~rI~eL~~E~~-------s~~~eie~l~KqlaEE 309 (474)
.++++...|..-.. ..+.+|+.|-+|+++|
T Consensus 297 ~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 297 EAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999888866422 2233444444444444
No 318
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=1.3e+03 Score=26.96 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHH
Q 011939 282 RLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLL 361 (474)
Q Consensus 282 R~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~ 361 (474)
..+..||+.+--..+.|||.+-.-|++=... |.+ ..++.++.|--+=+.+-+--.-+..-+.+...-++
T Consensus 49 kqq~eEleaeyd~~R~Eldqtkeal~q~~s~-----hkk------~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK 117 (772)
T KOG0999|consen 49 KQQLEELEAEYDLARTELDQTKEALGQYRSQ-----HKK------VARDGEEREESLLQESAAKEEYYLQKILELENELK 117 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH------hhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655555443322 111 12333444433333222222222223344555556
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh
Q 011939 362 KAVKDLDTEKRARVVIEQVCDELAR 386 (474)
Q Consensus 362 ~alkelE~ERKaRellE~vCDELAk 386 (474)
+.-++|.+-+-.++-|+.|..+|-.
T Consensus 118 q~r~el~~~q~E~erl~~~~sd~~e 142 (772)
T KOG0999|consen 118 QLRQELTNVQEENERLEKVHSDLKE 142 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666666666666666665543
No 319
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=21.96 E-value=8.3e+02 Score=24.65 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=44.0
Q ss_pred hchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011939 294 SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 373 (474)
Q Consensus 294 s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa 373 (474)
...++|..-|.++-.=.+-|+.+..++-. +..-+.+|+.| .+|-+-..+|-.+.=--.-|...|+++|+|.|-
T Consensus 121 ~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~------~~~~~k~rker-l~eEvre~fGy~vDprdprF~eml~~kEkeeKK 193 (217)
T PF10147_consen 121 AREKEIAKNMAKMPKWIAEWKAKIAKKEA------KAQAAKERKER-LIEEVREHFGYKVDPRDPRFQEMLQEKEKEEKK 193 (217)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHhCCcCCCCChHHHHHHHHHHHHHHH
Confidence 33556777777777777777776665521 11122333333 346666777766666666677777777776654
Q ss_pred H
Q 011939 374 R 374 (474)
Q Consensus 374 R 374 (474)
+
T Consensus 194 k 194 (217)
T PF10147_consen 194 K 194 (217)
T ss_pred H
Confidence 3
No 320
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.83 E-value=1.6e+03 Score=27.93 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 011939 277 ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAET 356 (474)
Q Consensus 277 EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~ 356 (474)
+|-+-.++|.++-.+--+...++..++.....+-..-..+-.+.-.. .++=...+++.+.+-+.++. -.+|-.+
T Consensus 221 qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki----~re~~~~Dk~i~~ke~~l~e--rp~li~~ 294 (1141)
T KOG0018|consen 221 ELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKI----RRELQKVDKKISEKEEKLAE--RPELIKV 294 (1141)
T ss_pred HHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh--hhHHhhc
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHH----HHHHhHhhhHHhhhhhhh
Q 011939 357 KHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE----MIQVADVLREERAQIKLS 432 (474)
Q Consensus 357 Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~----MLqmAEvWREERVQMKL~ 432 (474)
+-.....-+.++.+.+.=+-.+.--+.+...|...+-++.++-..-....+|+++.+. =|-|.+--.+|==+.|..
T Consensus 295 ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~e 374 (1141)
T KOG0018|consen 295 KENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEE 374 (1141)
T ss_pred chhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHh
Q 011939 433 EAKYQLEEKNAAVDKLRSQLEAFSR 457 (474)
Q Consensus 433 eAk~~lEeK~s~ldkL~~elE~FL~ 457 (474)
.-+.+ .++...+|.=....+.-|.
T Consensus 375 a~~~~-~~el~~ln~~~r~~~~~ld 398 (1141)
T KOG0018|consen 375 ACKEA-LEELEVLNRNMRSDQDTLD 398 (1141)
T ss_pred Hhhhh-HHHHHHHHHHHHHHHHHHh
No 321
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.42 E-value=2.2e+02 Score=25.69 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 309 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE 309 (474)
...|+.||++++.++.+-.++-...=.....||.+++++
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~ 65 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQD 65 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999998888877776655545555677777765
No 322
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.17 E-value=5.6e+02 Score=22.39 Aligned_cols=51 Identities=27% Similarity=0.518 Sum_probs=37.3
Q ss_pred HhhhHHHHhHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 338 LRRRFESLNKKLGKE-LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 338 ~Rrr~E~lN~KL~~E-LaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
-|+++|.+|+||-.+ |++ .+|+-||+--.+|-.-+..++.++..|++|..|
T Consensus 17 cr~~le~ve~rL~~~eLs~----------------e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 17 CRRRLEAVESRLRRRELSP----------------EARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHcccCCCh----------------HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 577888888888653 222 236667777777778888999999999987554
No 323
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.10 E-value=1.2e+03 Score=26.36 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=4.5
Q ss_pred cccHHHHHHHH
Q 011939 389 NDDKSEVEELK 399 (474)
Q Consensus 389 ~edkaEVe~LK 399 (474)
.+|+..+++|+
T Consensus 186 ~~yr~ki~aL~ 196 (508)
T PF00901_consen 186 EEYRQKIDALK 196 (508)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 324
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.00 E-value=2.5e+02 Score=25.71 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=49.4
Q ss_pred ccccccccccccchh-chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939 231 VGVKTRLKDVSNALT-TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 307 (474)
Q Consensus 231 ~~~k~r~~e~~~~L~-TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla 307 (474)
-.|+..+.+....|. +++.+=..++.+=+++.-...-+.-|..|..|+..+.....+.+.|.....+.|+.++..++
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777666654 45666666666533333233445678888888888888888887777766666666666554
No 325
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.90 E-value=1e+03 Score=29.29 Aligned_cols=102 Identities=25% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 283 LQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 283 ~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
+|-.++.+=+-+..++-..|++++..-+ ++.|+. -..+++.-+.||..|.=..+.-.+.+.|..-.+..+++
T Consensus 1075 aq~~Q~k~LK~~~e~e~kElk~~l~kkr-------~e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k 1146 (1189)
T KOG1265|consen 1075 AQTNQTKALKESLEKETKELKKKLDKKR-------MEDIKV-DKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSK 1146 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 011939 363 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 396 (474)
Q Consensus 363 alkelE~ERKaRellE~vCDELAkeI~edkaEVe 396 (474)
-...| .++--+.+|.+.++ ..--+.+++.+
T Consensus 1147 ~~e~L--~k~~~~~leql~e~--~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1147 RQEQL--VKKHLEVLEQLAEE--EKALDAEAEQE 1176 (1189)
T ss_pred HHHHH--HHHHHHHHHHHHHh--hHHHHHHHHHH
No 326
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.67 E-value=5.7e+02 Score=22.29 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHhHHHHHHhhhhhHHHHHHHH
Q 011939 266 SSMSLVSALHAELERARLQVNQLIQEQR---SDQSEISYLMKCFAEEKAAWKNKEREVVEAAI 325 (474)
Q Consensus 266 s~~SlvsaLk~EL~~AR~rI~eL~~E~~---s~~~eie~l~KqlaEEK~awKsKE~eki~aai 325 (474)
.++=-|.-|++|++.-...-..|.+|.+ +.+.++..=-.++.+|..+|. +++++.+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq----erLr~LL 73 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ----ERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3445577888988887777777776644 455667777889999999995 4555444
No 327
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=20.55 E-value=1.5e+03 Score=27.16 Aligned_cols=6 Identities=0% Similarity=-0.064 Sum_probs=2.4
Q ss_pred HhHhhh
Q 011939 418 VADVLR 423 (474)
Q Consensus 418 mAEvWR 423 (474)
|.+.|+
T Consensus 774 ~~~~~~ 779 (1047)
T PRK10246 774 LDEETL 779 (1047)
T ss_pred CCHHHH
Confidence 444443
No 328
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=20.52 E-value=7.5e+02 Score=23.56 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL 384 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDEL 384 (474)
....|+...+....+...++++|+..|.-.|.-+.++
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~ 83 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLEL 83 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555556666666666666555544
No 329
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.51 E-value=1.4e+03 Score=26.73 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=55.8
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHH-----
Q 011939 335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEV----- 409 (474)
Q Consensus 335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~----- 409 (474)
+...-.-+|.--.||-.||.|.|---.+.+.||-.--....-|-+...-| +.-.-|.|.||.+..++-||+
T Consensus 140 ~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L----R~sQVEyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 140 LKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL----RQSQVEYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH----hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444556666666666655555555533222223232222222 233445566666665554443
Q ss_pred --HHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 410 --EKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 410 --EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~s 458 (474)
|+.-..=-|||- +|.+|=.+|..-..+-+-|.-||+.|+..
T Consensus 216 q~ee~~~Lk~IAek--------QlEEALeTlq~EReqk~alkkEL~q~~n~ 258 (772)
T KOG0999|consen 216 QLEEAIRLKEIAEK--------QLEEALETLQQEREQKNALKKELSQYRNA 258 (772)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 344444456663 34445555544444445567777776654
No 330
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=1.4e+03 Score=26.83 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHH---HhHHHHHHhhhhhH--HHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQS--EISYLMK---CFAEEKAAWKNKER--EVVEAAIESIAGELEVERKLRRRFESL 345 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~--eie~l~K---qlaEEK~awKsKE~--eki~aai~slk~ELe~ERK~Rrr~E~l 345 (474)
.+++|++..+.++..+..+.++... ..+..++ ++++.+-.-+.++. .-+.+-++.+-...++ ++..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed-------~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED-------MQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 5677788888888887777776655 4555566 44444333222222 1122333333333333 7788
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 011939 346 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 346 N~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~r 406 (474)
|.+|.-||.+.--.--+.|.+..+-...-.++.+-=+.|...|-.+++-+..+.....++.
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~le 530 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLE 530 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777777777777666666666666666666666666666555554443
No 331
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=20.35 E-value=6.1e+02 Score=22.52 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 302 LMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 302 l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
+.++|..++..+-..+.+.....++....+|
T Consensus 62 ~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l 92 (158)
T PF03938_consen 62 LQQKLQSQKATLSEEERQKRQQELQQKEQEL 92 (158)
T ss_dssp HHHHHTTS----SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444433333
No 332
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.30 E-value=6.7e+02 Score=31.02 Aligned_cols=77 Identities=23% Similarity=0.220 Sum_probs=42.6
Q ss_pred hchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011939 294 SDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 373 (474)
Q Consensus 294 s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa 373 (474)
.+...+|.+.||+..+ ..--+.+.+-+.-..+...--+..-||.+++.|.. -+++.+...-+.++...++-|-+.
T Consensus 626 ~~~s~lE~~~kq~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~s----~~~~~~~~~~~l~~~~a~~~e~~k 700 (1221)
T KOG0245|consen 626 DYESKLESEQKQLETE-LREISEEEEEVQWTVKECELALWAKRKAKRHQEQS----LRDLLEGNAIFLAAAAALEVELKK 700 (1221)
T ss_pred HHHHHHHHHHHHHhhh-cccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHH----HHhhhhhhhHHHHHHHHHHHHhcc
Confidence 3445667777777666 11112223445555555666667778888888877 234444444555555555554443
Q ss_pred HH
Q 011939 374 RV 375 (474)
Q Consensus 374 Re 375 (474)
..
T Consensus 701 ~v 702 (1221)
T KOG0245|consen 701 KV 702 (1221)
T ss_pred ch
Confidence 33
No 333
>PRK10132 hypothetical protein; Provisional
Probab=20.25 E-value=6.3e+02 Score=22.64 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHhHHH
Q 011939 283 LQVNQLIQEQRSDQSEISYLMKCFAEE 309 (474)
Q Consensus 283 ~rI~eL~~E~~s~~~eie~l~KqlaEE 309 (474)
+++.+|..+-+.--.+++.|++..+++
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll~~~~~~ 38 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVLKSWGSD 38 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566666665556666666655544
No 334
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.19 E-value=1e+03 Score=24.90 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=36.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHH-HHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011939 310 KAAWKNKEREVVEAAIESIAGELEVE-RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVI 377 (474)
Q Consensus 310 K~awKsKE~eki~aai~slk~ELe~E-RK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRell 377 (474)
=.-|+.+-.+-++..++.-.+.|..+ ..+.+..+.+| .+.-+|.+-...+. .++...++...-|
T Consensus 134 WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~---~e~~~L~~~~~e~ 198 (312)
T smart00787 134 WYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLN-SIKPKLRDRKDALE---EELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHhHHHH
Confidence 34689998888888877777777554 34566666665 44444444443333 3444444443333
No 335
>PRK14149 heat shock protein GrpE; Provisional
Probab=20.19 E-value=5.8e+02 Score=25.12 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHh
Q 011939 345 LNKKLGKELAETKHSLLKAVK 365 (474)
Q Consensus 345 lN~KL~~ELaE~Kss~~~alk 365 (474)
.+.+++++|..+--.|..|+.
T Consensus 84 a~~~~~~~LLpVlDnLerAl~ 104 (191)
T PRK14149 84 AYEKIALDLLPVIDALLGALK 104 (191)
T ss_pred HHHHHHHHHhhHHhHHHHHHh
Confidence 344555555555555555544
No 336
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.06 E-value=2.9e+02 Score=22.28 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLM 303 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~ 303 (474)
+..+..++...+.++.++..|...-+.|+..|-
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777777777777777666666555553
No 337
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=20.02 E-value=5.7e+02 Score=22.01 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDD 391 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~ed 391 (474)
.|..|+..+..--++.-++|.+-...-.-+|.+|.|+...+..-
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333334444444444567889999988876643
No 338
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=20.02 E-value=7.3e+02 Score=23.26 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhHH
Q 011939 282 RLQVNQLIQEQRSDQSEISYLMKCFAE 308 (474)
Q Consensus 282 R~rI~eL~~E~~s~~~eie~l~KqlaE 308 (474)
+..|..-+.+-...+.+.+.+..+..+
T Consensus 57 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 83 (184)
T CHL00019 57 KQTILNTIRNSEERREEAIEKLEKARA 83 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444333
Done!