Query 011939
Match_columns 474
No_of_seqs 89 out of 109
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 18:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.1 0.013 4.4E-07 53.6 15.0 131 247-400 5-136 (154)
2 3oja_B Anopheles plasmodium-re 96.6 0.031 1.1E-06 56.9 14.2 126 273-406 453-578 (597)
3 2eqb_B RAB guanine nucleotide 96.2 0.062 2.1E-06 46.0 11.7 91 274-390 3-94 (97)
4 1c1g_A Tropomyosin; contractIl 95.4 1.3 4.3E-05 38.6 26.3 32 272-303 9-40 (284)
5 1i84_S Smooth muscle myosin he 93.8 0.011 3.7E-07 66.8 0.0 16 104-119 746-761 (1184)
6 1i84_S Smooth muscle myosin he 93.7 0.14 4.9E-06 57.9 8.8 11 106-116 616-626 (1184)
7 1c1g_A Tropomyosin; contractIl 93.5 3.5 0.00012 35.8 26.3 12 445-456 267-278 (284)
8 2dfs_A Myosin-5A; myosin-V, in 93.4 1.5 5.3E-05 49.8 16.2 128 289-423 920-1054(1080)
9 2dfs_A Myosin-5A; myosin-V, in 93.0 1.9 6.5E-05 49.0 16.1 80 319-402 924-1007(1080)
10 2e7s_A RAB guanine nucleotide 92.7 0.5 1.7E-05 42.5 8.9 108 273-396 12-120 (135)
11 3oja_B Anopheles plasmodium-re 92.6 2.7 9.1E-05 42.8 15.3 65 318-382 472-540 (597)
12 3u59_A Tropomyosin beta chain; 90.3 4.6 0.00016 33.6 11.9 75 271-349 11-95 (101)
13 2hg7_A Phage-like element PBSX 90.0 0.057 2E-06 46.7 0.0 39 324-362 64-102 (110)
14 3u1c_A Tropomyosin alpha-1 cha 88.8 6.9 0.00024 32.8 11.9 75 271-349 11-95 (101)
15 2v71_A Nuclear distribution pr 84.8 26 0.00089 32.9 14.8 33 269-301 42-74 (189)
16 2w6b_A RHO guanine nucleotide 82.9 3.6 0.00012 32.2 6.5 24 328-351 29-52 (56)
17 3vkg_A Dynein heavy chain, cyt 82.7 31 0.0011 43.9 17.9 53 352-404 1949-2001(3245)
18 3oja_A Leucine-rich immune mol 81.8 13 0.00045 37.1 12.1 67 335-401 412-478 (487)
19 3na7_A HP0958; flagellar bioge 81.0 37 0.0013 31.9 20.0 47 361-407 93-139 (256)
20 3vkg_A Dynein heavy chain, cyt 79.5 1.5E+02 0.0052 38.0 26.2 39 381-419 2037-2075(3245)
21 2w6b_A RHO guanine nucleotide 78.7 5.6 0.00019 31.1 6.3 38 349-386 15-52 (56)
22 3ol1_A Vimentin; structural ge 77.8 33 0.0011 29.4 12.6 49 295-344 18-69 (119)
23 2p22_C Protein SRN2; endosome, 76.4 43 0.0015 31.2 12.9 28 374-401 137-166 (192)
24 2ocy_A RAB guanine nucleotide 73.6 54 0.0019 29.9 17.2 91 350-454 50-140 (154)
25 3oja_A Leucine-rich immune mol 73.3 66 0.0023 32.1 14.3 30 377-406 433-462 (487)
26 3o0z_A RHO-associated protein 72.6 61 0.0021 30.0 14.5 27 318-344 64-90 (168)
27 2fxo_A Myosin heavy chain, car 72.2 47 0.0016 28.6 14.9 111 317-453 14-124 (129)
28 2v4h_A NF-kappa-B essential mo 71.7 23 0.00078 31.0 9.1 36 359-401 70-105 (110)
29 2eqb_B RAB guanine nucleotide 69.4 48 0.0016 28.3 10.4 79 271-356 7-95 (97)
30 3iyk_A VP5; icosahedral virus; 69.4 43 0.0015 35.8 12.2 37 253-296 74-110 (526)
31 2v0o_A FCHO2, FCH domain only 69.0 68 0.0023 29.2 18.1 21 348-368 126-146 (276)
32 3i00_A HIP-I, huntingtin-inter 69.0 40 0.0014 29.4 10.1 66 269-356 15-80 (120)
33 3swk_A Vimentin; cytoskeleton, 67.3 50 0.0017 27.0 10.8 56 346-401 16-78 (86)
34 3l4f_A RHO guanine nucleotide 64.9 16 0.00056 29.0 6.1 43 348-390 11-53 (61)
35 2e7s_A RAB guanine nucleotide 64.4 32 0.0011 30.9 8.8 88 351-452 39-126 (135)
36 3ol1_A Vimentin; structural ge 62.6 73 0.0025 27.2 14.5 73 275-352 19-98 (119)
37 1cii_A Colicin IA; bacteriocin 62.1 57 0.0019 35.0 11.4 54 278-331 358-413 (602)
38 2b5u_A Colicin E3; high resolu 59.7 1.4E+02 0.0047 32.2 13.8 70 318-397 344-427 (551)
39 3na7_A HP0958; flagellar bioge 59.6 1.2E+02 0.004 28.5 20.9 34 378-411 124-157 (256)
40 3tnu_A Keratin, type I cytoske 57.1 92 0.0031 26.8 10.2 62 270-332 32-93 (131)
41 2i1j_A Moesin; FERM, coiled-co 56.1 24 0.0008 37.5 7.5 101 289-401 292-399 (575)
42 3ghg_A Fibrinogen alpha chain; 54.4 92 0.0031 33.6 11.5 33 321-353 62-94 (562)
43 4ani_A Protein GRPE; chaperone 53.6 55 0.0019 31.1 8.9 64 269-332 59-122 (213)
44 3haj_A Human pacsin2 F-BAR; pa 51.4 2.1E+02 0.0072 29.1 20.4 34 339-372 131-164 (486)
45 3cl3_D NF-kappa-B essential mo 49.9 48 0.0016 29.8 7.3 92 271-369 4-101 (130)
46 2fxo_A Myosin heavy chain, car 49.1 1.3E+02 0.0043 25.9 16.2 68 326-400 51-118 (129)
47 3ghg_A Fibrinogen alpha chain; 48.7 67 0.0023 34.7 9.4 26 225-258 45-70 (562)
48 1f5n_A Interferon-induced guan 48.6 98 0.0034 33.1 10.8 93 363-458 485-582 (592)
49 2b5u_A Colicin E3; high resolu 48.0 2.9E+02 0.01 29.8 15.5 50 409-459 383-432 (551)
50 1k1f_A Breakpoint cluster regi 47.7 20 0.00067 29.2 4.0 43 270-312 27-69 (72)
51 3a7p_A Autophagy protein 16; c 47.7 1.7E+02 0.0057 26.8 12.6 70 284-358 69-138 (152)
52 3jsv_C NF-kappa-B essential mo 45.8 1.4E+02 0.0048 25.4 9.3 75 307-406 14-88 (94)
53 3o0z_A RHO-associated protein 45.7 1.9E+02 0.0064 26.8 16.2 58 341-405 59-116 (168)
54 1deq_A Fibrinogen (alpha chain 45.4 2.7E+02 0.0092 28.9 12.9 29 282-310 90-118 (390)
55 3ok8_A Brain-specific angiogen 43.4 2.3E+02 0.0078 27.1 15.9 125 246-391 69-203 (222)
56 1ic2_A Tropomyosin alpha chain 43.2 1.2E+02 0.0042 24.0 10.5 24 271-294 8-31 (81)
57 3tnu_B Keratin, type II cytosk 41.6 1.7E+02 0.0056 25.0 11.1 62 270-332 30-91 (129)
58 3hnw_A Uncharacterized protein 41.2 1.6E+02 0.0054 26.0 9.3 70 321-405 60-129 (138)
59 3u06_A Protein claret segregat 39.9 57 0.0019 33.3 7.1 38 271-308 5-42 (412)
60 3ghg_C Fibrinogen gamma chain; 37.0 52 0.0018 34.1 6.3 74 233-306 43-128 (411)
61 2q12_A DIP13 alpha, DCC-intera 36.4 2.6E+02 0.0088 25.7 13.3 50 363-413 184-244 (265)
62 1m1j_B Fibrinogen beta chain; 35.6 1.3E+02 0.0044 31.6 9.1 57 248-307 103-159 (464)
63 2j1d_G DAAM1, disheveled-assoc 35.4 2E+02 0.007 29.5 10.5 16 103-118 109-124 (483)
64 4etp_A Kinesin-like protein KA 35.0 78 0.0027 32.1 7.2 39 271-309 5-43 (403)
65 3bas_A Myosin heavy chain, str 34.2 1.9E+02 0.0064 23.5 11.6 65 320-398 18-82 (89)
66 4e61_A Protein BIM1; EB1-like 31.7 68 0.0023 27.8 5.2 34 268-301 3-36 (106)
67 3okq_A BUD site selection prot 31.3 3E+02 0.01 24.9 10.9 78 288-387 59-136 (141)
68 4b9q_A Chaperone protein DNAK; 29.8 3.7E+02 0.013 28.1 11.4 15 374-388 562-576 (605)
69 3s84_A Apolipoprotein A-IV; fo 29.0 4E+02 0.014 25.7 19.1 174 270-456 82-273 (273)
70 4dyl_A Tyrosine-protein kinase 28.9 4.4E+02 0.015 26.2 13.8 28 372-399 168-195 (406)
71 1go4_E MAD1 (mitotic arrest de 28.7 91 0.0031 26.7 5.4 61 387-454 13-86 (100)
72 3hnw_A Uncharacterized protein 28.7 1.7E+02 0.0058 25.8 7.4 20 439-458 116-135 (138)
73 3mq7_A Bone marrow stromal ant 28.3 3.1E+02 0.011 24.3 10.7 41 272-312 28-68 (121)
74 3s9g_A Protein hexim1; cyclin 27.8 2.3E+02 0.0079 24.5 7.7 27 381-407 60-86 (104)
75 3vem_A Helicase protein MOM1; 26.9 3.2E+02 0.011 24.0 8.9 38 327-370 61-98 (115)
76 2j69_A Bacterial dynamin-like 26.8 6.1E+02 0.021 27.1 12.7 66 296-377 598-663 (695)
77 1m1j_C Fibrinogen gamma chain; 26.8 93 0.0032 32.1 6.1 34 233-266 43-76 (409)
78 3l4f_A RHO guanine nucleotide 26.5 1.3E+02 0.0045 23.8 5.6 28 328-355 26-53 (61)
79 2yy0_A C-MYC-binding protein; 25.4 69 0.0024 24.3 3.7 32 267-298 17-48 (53)
80 1nfn_A Apolipoprotein E3; lipi 25.2 3.9E+02 0.013 24.3 13.1 25 338-362 93-117 (191)
81 3q8t_A Beclin-1; autophagy, AT 24.7 3E+02 0.01 22.8 11.8 65 349-420 9-74 (96)
82 1h7c_A Tubulin-specific chaper 24.1 3.2E+02 0.011 23.2 8.0 30 278-307 9-38 (108)
83 3mq9_A Bone marrow stromal ant 21.8 5.8E+02 0.02 25.1 15.6 72 342-413 395-470 (471)
84 4dk0_A Putative MACA; alpha-ha 21.8 3.7E+02 0.013 25.3 8.9 32 271-302 72-103 (369)
85 1h7c_A Tubulin-specific chaper 21.2 3.2E+02 0.011 23.2 7.4 75 376-459 11-85 (108)
86 3m91_A Proteasome-associated A 20.9 2E+02 0.0068 21.8 5.4 28 342-369 21-48 (51)
87 3m48_A General control protein 20.9 64 0.0022 22.9 2.5 23 377-399 5-27 (33)
88 3lay_A Zinc resistance-associa 20.7 2.5E+02 0.0085 25.7 7.2 57 271-335 87-143 (175)
89 3ni0_A Bone marrow stromal ant 20.6 4.1E+02 0.014 22.8 8.5 41 272-312 21-61 (99)
90 2hg7_A Phage-like element PBSX 20.4 21 0.00073 30.9 0.0 35 365-399 70-104 (110)
91 3iv1_A Tumor susceptibility ge 20.3 3.6E+02 0.012 22.1 8.7 57 270-334 12-71 (78)
92 2jee_A YIIU; FTSZ, septum, coi 20.3 2.8E+02 0.0095 22.9 6.6 50 267-316 18-70 (81)
93 4b9q_A Chaperone protein DNAK; 20.2 5.6E+02 0.019 26.7 10.6 22 367-388 581-602 (605)
94 2j69_A Bacterial dynamin-like 20.1 8.1E+02 0.028 26.1 13.9 56 409-464 599-658 (695)
95 3mxz_A Tubulin-specific chaper 20.1 3.5E+02 0.012 23.3 7.5 72 379-459 15-86 (116)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.14 E-value=0.013 Score=53.62 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=100.8
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q 011939 247 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIE 326 (474)
Q Consensus 247 S~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~ 326 (474)
|+.|+..+|+.=.|+|. +..++.+|..++.+|+.|+..+. +++.+. .+ ..-+.+-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~----~~--------~~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLK----RE--------LSDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHH----TH--------HHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HH--------HhhhhHHHH
Confidence 67899999998766664 67788999999999999998764 333332 22 223566777
Q ss_pred HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 011939 327 SIAGELEVERKLRRRFESLNKKLGKELAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 400 (474)
Q Consensus 327 slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss-~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKr 400 (474)
.+.++|..|+..|..+|.-..++-.||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..++|-+.-++.|-.
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997655 45555555678999999988888888888776666655443
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.57 E-value=0.031 Score=56.93 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 352 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E 352 (474)
.|..|+.+-+..|+.|+.+.......+..+-..+.+.+..+.....+. . ..++.|+ +..++++..+..+..+
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-~----~~~~~l~---~~~~~~~~~~~~~~~~ 524 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL-A----RSSDNLN---KVFTHLKERQAFKLRE 524 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-S----CHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc-C----CHHHHHH---HHHHHHHhhhhhhHHH
Confidence 345566666666666666655544444444444444333332100000 0 0001111 1122333355555666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 011939 353 LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 353 LaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~r 406 (474)
+...+.++..-.++|+..++.++.||..+++.-+.+.+.+.|+..++.+.....
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666777777777777777777776666666666666665544443
No 3
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.21 E-value=0.062 Score=45.99 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939 274 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353 (474)
Q Consensus 274 Lk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL 353 (474)
|..+|+.+|.+|++|+.+... +.+-+..|.++|..|+..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888866543 334445588889999999999999999999999
Q ss_pred HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939 354 AETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDIND 390 (474)
Q Consensus 354 aE~Kss-~~~alkelE~ERKaRellE~vCDELAkeI~e 390 (474)
.+.-.| |..|=+=.-.+|+.+..+|.--+.|...|+|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886655 4455555556677777777766666665544
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.37 E-value=1.3 Score=38.63 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 011939 272 SALHAELERARLQVNQLIQEQRSDQSEISYLM 303 (474)
Q Consensus 272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~ 303 (474)
.+|+.+++.+...+.+|..+......+++.+-
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 40 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLE 40 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444444443333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.81 E-value=0.011 Score=66.83 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=9.0
Q ss_pred ccHHHHHHHHhhhcCC
Q 011939 104 VSARKLAATLWEMNEM 119 (474)
Q Consensus 104 vSARKLaAtLWE~n~~ 119 (474)
+..++.|..|-.-..+
T Consensus 746 ~d~k~~~~~lL~~l~l 761 (1184)
T 1i84_S 746 MDGKQACILMIKALEL 761 (1184)
T ss_dssp CCHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHcCC
Confidence 4567776666554333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.75 E-value=0.14 Score=57.91 Aligned_cols=11 Identities=36% Similarity=0.755 Sum_probs=6.3
Q ss_pred HHHHHHHHhhh
Q 011939 106 ARKLAATLWEM 116 (474)
Q Consensus 106 ARKLaAtLWE~ 116 (474)
--.+.+.||.-
T Consensus 616 ~~~~~~~lf~~ 626 (1184)
T 1i84_S 616 SDKFVADLWKD 626 (1184)
T ss_dssp SCHHHHHHHSC
T ss_pred chHHHHHHhcc
Confidence 34566667653
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.50 E-value=3.5 Score=35.81 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 011939 445 VDKLRSQLEAFS 456 (474)
Q Consensus 445 ldkL~~elE~FL 456 (474)
+.++..+++.++
T Consensus 267 ~~~~~~~~~~~~ 278 (284)
T 1c1g_A 267 YKAISEELDHAL 278 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.37 E-value=1.5 Score=49.76 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=49.0
Q ss_pred HHHhhhchhHHHHHHHHhHHHHHHhh------hhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 289 IQEQRSDQSEISYLMKCFAEEKAAWK------NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 289 ~~E~~s~~~eie~l~KqlaEEK~awK------sKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
.........+|..|-.++.++...++ ....++...-+..|+.++++..+.-...+.+. .++.+...-+..
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~----~~v~~L~~e~~~ 995 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT----NRVLSLQEEIAK 995 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33344444555555555554333222 11223445556666666666555433333222 222222223333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH-hHHHHHHhHhhh
Q 011939 363 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK-EREMIQVADVLR 423 (474)
Q Consensus 363 alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~Ee-ER~MLqmAEvWR 423 (474)
.-++|++..+..+.+|+-++++-. +.+..|..|+.+-.+++.++++ |..++..++-|.
T Consensus 996 l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666655542 4445555566655555554433 335555555554
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.96 E-value=1.9 Score=49.03 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHH----HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Q 011939 319 EVVEAAIESIAGELEVERKLRRRFES----LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSE 394 (474)
Q Consensus 319 eki~aai~slk~ELe~ERK~Rrr~E~----lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaE 394 (474)
.+....|..|...|+++.+....+.. +..++..|.++. .+.+.++|...+...-+++...+|-.+|.+.+.+
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L----~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL----RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666554443333322 233444444433 2233334443333333344444444444444444
Q ss_pred HHHHHHHh
Q 011939 395 VEELKRES 402 (474)
Q Consensus 395 Ve~LKres 402 (474)
+..+..+.
T Consensus 1000 ~~~~~ke~ 1007 (1080)
T 2dfs_A 1000 LHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 10
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.71 E-value=0.5 Score=42.50 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 011939 273 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 352 (474)
Q Consensus 273 aLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~E 352 (474)
.++.+|.-.+++|++|+..+. +++.+.+.+ ..+..-+..+..+|..|+..|..+|.-..++-.|
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 75 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 75 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888887664 333333333 2334446669999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 011939 353 LAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 396 (474)
Q Consensus 353 LaE~Kss-~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe 396 (474)
|.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..++|-+.-++
T Consensus 76 lE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 76 VEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997655 4555555666788888888887777777766544333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.61 E-value=2.7 Score=42.81 Aligned_cols=65 Identities=9% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhh----hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRR----RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD 382 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rr----r~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCD 382 (474)
.+...+.++.++.+++..+..-+ .++....+|.+++..++.-......++.+.+++-.-..+.++
T Consensus 472 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 34456677777777776655433 222333556666555555555555555544444433333333
No 12
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.33 E-value=4.6 Score=33.63 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh------hHHHHHHHHHHHHHHhHHHHHHhh----
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK------EREVVEAAIESIAGELEVERKLRR---- 340 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERK~Rr---- 340 (474)
|.+|+.|.+.|..++.+++....... .-..++.+|-.+.+.| +.|++...+......|+...+.+-
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e----~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAE----DRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988877754332 2222333333222222 356777777778888888887777
Q ss_pred hHHHHhHHH
Q 011939 341 RFESLNKKL 349 (474)
Q Consensus 341 r~E~lN~KL 349 (474)
.+.+||+|+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445566665
No 13
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=90.03 E-value=0.057 Score=46.66 Aligned_cols=39 Identities=46% Similarity=0.663 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 324 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 324 ai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
-|+.+..||..|+=+|+++|.+|.-|++||+.+|..+..
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~ 102 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS 102 (110)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999987643
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.82 E-value=6.9 Score=32.80 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhh------hHHHHHHHHHHHHHHhHHHHHHhh----
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK------EREVVEAAIESIAGELEVERKLRR---- 340 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERK~Rr---- 340 (474)
|.+|+.|.+.|..++.+++...+... .-..++.+|-.+...| +-|++...+......|+...+..-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e----~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAE----ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999988888876654322 2222223332222211 356777777778888888887777
Q ss_pred hHHHHhHHH
Q 011939 341 RFESLNKKL 349 (474)
Q Consensus 341 r~E~lN~KL 349 (474)
.+.+||+|+
T Consensus 87 ev~~L~Rri 95 (101)
T 3u1c_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666665
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.83 E-value=26 Score=32.90 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISY 301 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~ 301 (474)
-|=..|..||+++..++++|.......+.+++.
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443333333
No 16
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=82.86 E-value=3.6 Score=32.20 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=19.6
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHH
Q 011939 328 IAGELEVERKLRRRFESLNKKLGK 351 (474)
Q Consensus 328 lk~ELe~ERK~Rrr~E~lN~KL~~ 351 (474)
|+.-||.|.++|+++|.+=+|+.+
T Consensus 29 m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 29 MKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555688899999999999888843
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.71 E-value=31 Score=43.95 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 011939 352 ELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 404 (474)
Q Consensus 352 ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k 404 (474)
+|.+....+.+.|++++.+...-+--.+++.+....+..-.+|+.+.|.++++
T Consensus 1949 ~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~ 2001 (3245)
T 3vkg_A 1949 ELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444444444444444444444555555554443
No 18
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.85 E-value=13 Score=37.11 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=51.7
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 335 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 335 ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKre 401 (474)
..+..++.|.+-.++-.|...++.-....-.+.++.++..+.++.+-+|+-..|.+.++.+-.+.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 5566666777777777777777777777777788888888888888889988888888887776654
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.98 E-value=37 Score=31.91 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=24.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 011939 361 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE 407 (474)
Q Consensus 361 ~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~re 407 (474)
....++++.-.+....+|+-=.++...|.+.+++++.++.+......
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566665555555555555555555544443333
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.49 E-value=1.5e+02 Score=38.04 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHh
Q 011939 381 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVA 419 (474)
Q Consensus 381 CDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmA 419 (474)
-+++-..|..++++.++..+|.+++..|++.=..=|.-|
T Consensus 2037 L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2037 ITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666665555555555554433333333
No 21
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=78.69 E-value=5.6 Score=31.12 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 011939 349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELAR 386 (474)
Q Consensus 349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 386 (474)
|..|+.+.+.-+++.-+-||.|.|||.-||.+-..+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666667777777899999999999998877744
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=77.77 E-value=33 Score=29.40 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=24.9
Q ss_pred chhHHHHHHHHhHH---HHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 011939 295 DQSEISYLMKCFAE---EKAAWKNKEREVVEAAIESIAGELEVERKLRRRFES 344 (474)
Q Consensus 295 ~~~eie~l~KqlaE---EK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~ 344 (474)
+..+|+.|.++|.+ |++. =--|-+.++.++++++...|.|-..|..+|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~-l~leldn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKAR-VEVERDNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34456666665532 2211 1123455556666666666666666555543
No 23
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=76.37 E-value=43 Score=31.16 Aligned_cols=28 Identities=4% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhccc--HHHHHHHHHH
Q 011939 374 RVVIEQVCDELARDINDD--KSEVEELKRE 401 (474)
Q Consensus 374 RellE~vCDELAkeI~ed--kaEVe~LKre 401 (474)
=.-.|++|++++....+. +-+|..+-++
T Consensus 137 ~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 137 TKKLDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 344678899999998875 7888877765
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.58 E-value=54 Score=29.90 Aligned_cols=91 Identities=22% Similarity=0.332 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhh
Q 011939 350 GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQI 429 (474)
Q Consensus 350 ~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQM 429 (474)
..+++++...+.+...+|..|+..|.-.|..++.+-.++.+.-+-+ - ++=-.|+--| ----..++-
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL----------F---eEAN~MVa~a-r~~~~~~e~ 115 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL----------F---DEANNMVADA-RKEKYAIEI 115 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----------H---HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H---HHHHHHHHHH-HHHHHHHHH
Confidence 3456677778888888999999999999999998887777664422 1 2223343222 000122344
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHH
Q 011939 430 KLSEAKYQLEEKNAAVDKLRSQLEA 454 (474)
Q Consensus 430 KL~eAk~~lEeK~s~ldkL~~elE~ 454 (474)
|...-+..+.+|...++.|+.+|..
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777766643
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.30 E-value=66 Score=32.05 Aligned_cols=30 Identities=17% Similarity=-0.017 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 011939 377 IEQVCDELARDINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 377 lE~vCDELAkeI~edkaEVe~LKres~k~r 406 (474)
++..+++...+|...+.|-+.++.+...+-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 666677776666666666666555544443
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.63 E-value=61 Score=30.04 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRRFES 344 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr~E~ 344 (474)
.+.+..-+..|...|+.||+.|.+.+-
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555554443
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.24 E-value=47 Score=28.58 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 011939 317 EREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 396 (474)
Q Consensus 317 E~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe 396 (474)
|-.+...-|..+++.|+.+-+.|+.+|.-|.+|..|..+... .|+.|+-.-.=.|+.|+.|...=.+.+..+.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~-------qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL-------QVQAEQDNLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344456667789999999999999999999999999877554 4555766666678888888877666666666
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939 397 ELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLE 453 (474)
Q Consensus 397 ~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE 453 (474)
.|... +++ +|-.--.|..++--++...+.+.+-..++|
T Consensus 87 el~~r-------lee------------eee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 87 EMNKR-------LED------------EEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHH-------HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55322 222 122223455566666665555555444444
No 28
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=71.71 E-value=23 Score=30.97 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 359 SLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 359 s~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKre 401 (474)
-+.=+-.|.+.||-+|+- ++-++.+++.+++.|.++
T Consensus 70 Qv~IY~~DF~aERadREk-------l~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 70 QADIYKADFQAERHAREK-------LVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhHHH-------HHhHHHHHHHHHHHHHHH
Confidence 334456688888888873 344455555555655554
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.44 E-value=48 Score=28.34 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHH--HHHHHHHHHHHHh--------HHHHHHhh
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE--VVEAAIESIAGEL--------EVERKLRR 340 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~e--ki~aai~slk~EL--------e~ERK~Rr 340 (474)
...|+.+|.++..++.....|. ..|+..+.+|+..+..-|.+ +|..-|.+|-.-| -.+|+.|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~-------~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEV-------KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766654 34666677777665554433 2333333333322 35688899
Q ss_pred hHHHHhHHHHHHHHHH
Q 011939 341 RFESLNKKLGKELAET 356 (474)
Q Consensus 341 r~E~lN~KL~~ELaE~ 356 (474)
.+|.-|.+|...|.|.
T Consensus 80 ~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 80 AIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988874
No 30
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=69.38 E-value=43 Score=35.81 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=22.4
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 011939 253 IINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ 296 (474)
Q Consensus 253 Vlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~ 296 (474)
+||=. |-.|-....+|-. =..-+..|+||+.|++.++
T Consensus 74 ilNV~-G~~~~~pDPLsPg------E~~~~~Kl~eLE~e~k~d~ 110 (526)
T 3iyk_A 74 LLNVL-GSGEEIPDPLSPG------ERGIQAKLKELEDEQRNEL 110 (526)
T ss_pred HHHhc-ccCCCCCCCCCHh------HHHHHHHHHHHHHHHhhHH
Confidence 34433 4555544444432 2468899999999987643
No 31
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=69.02 E-value=68 Score=29.17 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 011939 348 KLGKELAETKHSLLKAVKDLD 368 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE 368 (474)
++.+++.++...+.++.+.|+
T Consensus 126 ~~~~~~~~~~~~l~Kak~~Y~ 146 (276)
T 2v0o_A 126 EAVQTIQSITQALQKSKENYN 146 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444555444443
No 32
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.96 E-value=40 Score=29.39 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK 348 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~K 348 (474)
.+|-.|+.|++.-+..+..+..|.+.. |..| +..|-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~---v~ql-------------------~~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV---VLQL-------------------KGHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999998888653 3333 344555778888888887777777777
Q ss_pred HHHHHHHH
Q 011939 349 LGKELAET 356 (474)
Q Consensus 349 L~~ELaE~ 356 (474)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 33
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.25 E-value=50 Score=26.97 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-------cccHHHHHHHHHH
Q 011939 346 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI-------NDDKSEVEELKRE 401 (474)
Q Consensus 346 N~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI-------~edkaEVe~LKre 401 (474)
|.+|.-|+-.++.++-.+-.-||.|-..|.-+|.-..-|-+.+ -+.++.|+.|+.|
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888888888888888888887776555444444 4566666666544
No 34
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=64.87 E-value=16 Score=28.99 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011939 348 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 390 (474)
Q Consensus 348 KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~e 390 (474)
-|-.|+.+.+.-..+.-+=+|.|.++|.-||.+|-.+.+...|
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455666666666777777888999999999998888776543
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.41 E-value=32 Score=30.86 Aligned_cols=88 Identities=22% Similarity=0.342 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 011939 351 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK 430 (474)
Q Consensus 351 ~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMK 430 (474)
.+|+.+..-+.+...+|..|+..|.-.|..++.+-.++.+.-+- +- ++=-.|+--|-. --..++-|
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas----------LF---eEAN~MVa~ar~-~~~~~e~r 104 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS----------LF---DEANNLVADARM-EKYAIEIL 104 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH----------HH---HHHHHHHHHTTH-HHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH---HHHHHHHHHHHH-HHHHHHHH
Confidence 45567777778888889999999999999999887777666442 21 233344433311 11233445
Q ss_pred hhHhhhhhhhhhHHHHHHHHHH
Q 011939 431 LSEAKYQLEEKNAAVDKLRSQL 452 (474)
Q Consensus 431 L~eAk~~lEeK~s~ldkL~~el 452 (474)
....+.++.+|...++.|+.+|
T Consensus 105 ~~~L~~ql~e~e~ll~~lq~QL 126 (135)
T 2e7s_A 105 NKRLTEQLREKDMLLDTLTLQL 126 (135)
T ss_dssp HHHHHHTTTHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666655554
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.59 E-value=73 Score=27.21 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 011939 275 HAELERARLQVNQLIQE-------QRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 347 (474)
Q Consensus 275 k~EL~~AR~rI~eL~~E-------~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~ 347 (474)
..+|...|.+|..+..+ ....+..++.|-.++.+|-..+ ..+.+.|..++..++++==.|--+|.--.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-----~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-----EEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 44555555555555544 4555666677777777776543 33455666777777665544444443333
Q ss_pred HHHHH
Q 011939 348 KLGKE 352 (474)
Q Consensus 348 KL~~E 352 (474)
-|..|
T Consensus 94 sL~eE 98 (119)
T 3ol1_A 94 SLQEE 98 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 37
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=62.11 E-value=57 Score=35.00 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHH--HHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 011939 278 LERARLQVNQLIQEQRSDQSEISYL--MKCFAEEKAAWKNKEREVVEAAIESIAGE 331 (474)
Q Consensus 278 L~~AR~rI~eL~~E~~s~~~eie~l--~KqlaEEK~awKsKE~eki~aai~slk~E 331 (474)
|+.||+.|..++....+-+..+... -.|-+++.+.-+-+|.+.++.++-.++..
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444444444433333333322 13334444444445555565566555555
No 38
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=59.70 E-value=1.4e+02 Score=32.19 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHH------------HhHH--HHHHHHHHHHHHHHHH
Q 011939 318 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKA------------VKDL--DTEKRARVVIEQVCDE 383 (474)
Q Consensus 318 ~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~a------------lkel--E~ERKaRellE~vCDE 383 (474)
+.+...++++++.+|+. +|..|+.-+++++.-...+ +.-| .+-.-.=..++..-|+
T Consensus 344 ~~~t~~~~~~~~~~~~~----------~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~ 413 (551)
T 2b5u_A 344 QAKAVQVYNSRKSELDA----------ANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413 (551)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHh----------hhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHH
Confidence 35666889999999954 8888888877654311000 0011 1111112356777888
Q ss_pred HHhhhcccHHHHHH
Q 011939 384 LARDINDDKSEVEE 397 (474)
Q Consensus 384 LAkeI~edkaEVe~ 397 (474)
+++++.++++++-.
T Consensus 414 ~~~~~s~~~~~ls~ 427 (551)
T 2b5u_A 414 AAKEKSDADAALSS 427 (551)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhh
Confidence 88888888886653
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.59 E-value=1.2e+02 Score=28.53 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 011939 378 EQVCDELARDINDDKSEVEELKRESAIALEEVEK 411 (474)
Q Consensus 378 E~vCDELAkeI~edkaEVe~LKres~k~reE~Ee 411 (474)
+...+++...+.+.++++..++.+......+++.
T Consensus 124 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 124 SEKQEDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333333
No 40
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.13 E-value=92 Score=26.76 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
.+...+.|+-..|..|+.|..|-.+.+..-..|-..++|=. .+-..+...+.+.|..+..+|
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e-~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK-GRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 36667788888888888888887777766666666666433 233334444555555554444
No 41
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.11 E-value=24 Score=37.45 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=38.1
Q ss_pred HHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 011939 289 IQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD 368 (474)
Q Consensus 289 ~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE 368 (474)
...++.+--+|..+-.|-.|||.. |-.|++ -|..|+.+|..+|.--.-|-.-|...+..+.++-.+|+
T Consensus 292 ~~~r~~d~~e~qqm~~~a~e~~~~-~~~e~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (575)
T 2i1j_A 292 MRRRKPDTIDVQQMKAQAREEKLA-KQAQRE-----------KLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLL 359 (575)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHH-HHHHHT-----------TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCcHHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665555555533 222332 24456666666665555555556666666665555554
Q ss_pred HH-HHHHHH------HHHHHHHHHhhhcccHHHHHHHHHH
Q 011939 369 TE-KRARVV------IEQVCDELARDINDDKSEVEELKRE 401 (474)
Q Consensus 369 ~E-RKaRel------lE~vCDELAkeI~edkaEVe~LKre 401 (474)
+- .+++.| .|+-...|++.-.+.+++...|+..
T Consensus 360 ~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 360 EAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HHHHC-----------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222222 2233444444444444444444444
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.39 E-value=92 Score=33.65 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 011939 321 VEAAIESIAGELEVERKLRRRFESLNKKLGKEL 353 (474)
Q Consensus 321 i~aai~slk~ELe~ERK~Rrr~E~lN~KL~~EL 353 (474)
+...|..|+.+|++=.+.++-++..-+-+..+|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 455666777777776777777766654444443
No 43
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=53.59 E-value=55 Score=31.06 Aligned_cols=64 Identities=6% Similarity=0.095 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
.-+..|..+|...+.++.+|...-....-+++.+.|....|+...+.---+++-..|-.+-+-|
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnl 122 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNF 122 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4467888899999999999988888888888888888888876555544444444333444433
No 44
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=51.45 E-value=2.1e+02 Score=29.08 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=20.5
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011939 339 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKR 372 (474)
Q Consensus 339 Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERK 372 (474)
||.++.--.|+.++|.+.-..+.++.+.|+..-+
T Consensus 131 rK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~ck 164 (486)
T 3haj_A 131 TKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACK 164 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666654433
No 45
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=49.87 E-value=48 Score=29.75 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH---HHHHHh---hhhhHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA---EEKAAW---KNKEREVVEAAIESIAGELEVERKLRRRFES 344 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla---EEK~aw---KsKE~eki~aai~slk~ELe~ERK~Rrr~E~ 344 (474)
|.+|-.||..|+....+-+.++++.....-.+-+++. .|.-.- -.=.-|+++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 5678889999999999999998887766555443332 222111 1223467777888999999888764 222
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHH
Q 011939 345 LNKKLGKELAETKHSLLKAVKDLDT 369 (474)
Q Consensus 345 lN~KL~~ELaE~Kss~~~alkelE~ 369 (474)
--+| |+..+.+..+..+||.+
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHH
Confidence 2333 56678888888888877
No 46
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.14 E-value=1.3e+02 Score=25.85 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 011939 326 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 400 (474)
Q Consensus 326 ~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKr 400 (474)
..|...|..|+-+-.-.|-...+|...-.+...-+.-+-..+|. .|+.+++|...-...+.++..|+.
T Consensus 51 ~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee-------eee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 51 NDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED-------EEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665544444444443333333 344444554444444555555444
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.74 E-value=67 Score=34.67 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=17.0
Q ss_pred CCCCccccccccccccccchhchHHHHHHHHhhc
Q 011939 225 TPSGSTVGVKTRLKDVSNALTTSKELLKIINRMW 258 (474)
Q Consensus 225 tps~s~~~~k~r~~e~~~~L~TS~ELlkVlnriw 258 (474)
=|++| ||+..= +++-.+|.++||.|.
T Consensus 45 CPSGC------rLQglL--dkqErDltkrINELK 70 (562)
T 3ghg_A 45 CPSGC------RMKGLI--DEVNQDFTNRINKLK 70 (562)
T ss_dssp EECHH------HHHHHH--HHHHHHHHHHHHHHH
T ss_pred CCccc------chhhhH--HhhcCcHHHHHHHHH
Confidence 37888 555432 566677777777775
No 48
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=48.60 E-value=98 Score=33.07 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH----hHHHHHHHHHhHHHH-HHhHhhhHHhhhhhhhHhhhh
Q 011939 363 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE----SAIALEEVEKEREMI-QVADVLREERAQIKLSEAKYQ 437 (474)
Q Consensus 363 alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKre----s~k~reE~EeER~ML-qmAEvWREERVQMKL~eAk~~ 437 (474)
.-|+++.|+..++.+|.-...|..-..+.++-++.-++. -..+.+.||+||+.+ +=-|.-.+.++|.+-.-.+..
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g 564 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888876666655555543332 223444477777744 333344455555544444555
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 011939 438 LEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 438 lEeK~s~ldkL~~elE~FL~s 458 (474)
|.+|... |..||+.+=+.
T Consensus 565 ~~~~~~~---~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRI---MKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHh
Confidence 6666554 44555554443
No 49
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=48.03 E-value=2.9e+02 Score=29.75 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=34.1
Q ss_pred HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 011939 409 VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ 459 (474)
Q Consensus 409 ~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~sk 459 (474)
++-...|-||+- |--.|-|-.|-.++.+|..=....+.-.++|-.-|..+
T Consensus 383 ~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 383 MAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 455689999977 88888888777776666554445555556666555554
No 50
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=47.74 E-value=20 Score=29.22 Aligned_cols=43 Identities=33% Similarity=0.473 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
-|--+..||+.+++.|+.|++|--..+=.|=||--.||-||.+
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3778899999999999999999988777888888777777644
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.67 E-value=1.7e+02 Score=26.82 Aligned_cols=70 Identities=24% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHH
Q 011939 284 QVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKH 358 (474)
Q Consensus 284 rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Ks 358 (474)
.|..|..|....+.+|..+--- ..=|+|--+.+.+.+.++.-++..=-.-.++++.-|..|+.=+-.-|.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeee-----l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEV-----IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444433333211 222456677788888888888776666667777778777765554443
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.80 E-value=1.4e+02 Score=25.41 Aligned_cols=75 Identities=21% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 011939 307 AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELAR 386 (474)
Q Consensus 307 aEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAk 386 (474)
+||.++-|..+-++++..|.-.+..++. ++- .+.-+.=+-.|.+.||.+|+- ++.
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~~~~E~-------i~v-----------Lk~Qv~IY~~DF~aERadREk-------l~~ 68 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHKIVMET-------VPV-----------LKAQADIYKADFQAERHAREK-------LVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-----------HHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHH-----------HHHHHHHHHHHHHHHHHHHHH-------HHh
Confidence 5666666655555555544444444322 221 123334456789999999984 566
Q ss_pred hhcccHHHHHHHHHHhHHHH
Q 011939 387 DINDDKSEVEELKRESAIAL 406 (474)
Q Consensus 387 eI~edkaEVe~LKres~k~r 406 (474)
++.++...++.|.++..++-
T Consensus 69 eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp TTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777655443
No 53
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.75 E-value=1.9e+02 Score=26.81 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=44.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 011939 341 RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 405 (474)
Q Consensus 341 r~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~ 405 (474)
.++..--.|-+|++.+.+ .|+.||+.|-..++.-.||=..|.....|++.+|..-.++
T Consensus 59 ~L~~~k~~Leke~~~LQa-------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQA-------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666 4677999999999999999998988888888888765544
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.39 E-value=2.7e+02 Score=28.90 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHhHHHH
Q 011939 282 RLQVNQLIQEQRSDQSEISYLMKCFAEEK 310 (474)
Q Consensus 282 R~rI~eL~~E~~s~~~eie~l~KqlaEEK 310 (474)
=..|.++.++.+...++.+..+-++++|-
T Consensus 90 ~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 90 TKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33445555555555556666666666664
No 55
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=43.38 E-value=2.3e+02 Score=27.15 Aligned_cols=125 Identities=22% Similarity=0.166 Sum_probs=65.4
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH-HHH----HHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHH
Q 011939 246 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELER-ARL----QVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREV 320 (474)
Q Consensus 246 TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~-AR~----rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ek 320 (474)
+|+||-.||-+|- -.-..|.++|+. .++ =|.+|+.--..+.+-|....|++.-|- |. +
T Consensus 69 ~skeLG~vL~qis----------~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~---k~----~ 131 (222)
T 3ok8_A 69 TSQILGEILVQMS----------DTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEY---RH----R 131 (222)
T ss_dssp SCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----H
T ss_pred chhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hH----H
Confidence 5688888888884 334556666655 333 355555555566666666677666552 22 2
Q ss_pred HHHHHHHHHHHhHHH-HHHh----hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011939 321 VEAAIESIAGELEVE-RKLR----RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDD 391 (474)
Q Consensus 321 i~aai~slk~ELe~E-RK~R----rr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~ed 391 (474)
. +.+.-.+.||..= ||.. +-.|.++.+=..=-+=+..++..|| +|..||=+-|+|.-|- |++-+-.|
T Consensus 132 ~-~~leK~~~elkK~~rksqk~~~k~~e~v~~~q~el~~f~~~s~r~Al--~EErRRYcFL~ekhc~-~~~~~~~~ 203 (222)
T 3ok8_A 132 A-ANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAE--LEEKRRYRFLAEKHLL-LSNTFLQF 203 (222)
T ss_dssp H-HHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred H-HHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1 2233334444322 2211 1144444332211111223333333 6778888899999995 55555444
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.22 E-value=1.2e+02 Score=24.02 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 011939 271 VSALHAELERARLQVNQLIQEQRS 294 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s 294 (474)
|.+|+.|++.|..++.++......
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~ 31 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKA 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999888877654
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.60 E-value=1.7e+02 Score=25.02 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 332 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 332 (474)
-+.+-+.|+-..+..|+.|..|-.+.+.....|-..++|=.. +-..+-..+.+.|..+..+|
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-RGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhH
Confidence 355667788888888888888887777777777777765432 33344445555555555554
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.16 E-value=1.6e+02 Score=25.97 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 011939 321 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 400 (474)
Q Consensus 321 i~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKr 400 (474)
|=+||. +.+||-..+.--..++.....+.+|+.+.|.-+..+--.+| ++-+++.+++.++.+|..
T Consensus 60 VLaALN-iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e--------------~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 60 DMMYLN-IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE--------------SSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 334442 66677766666666666666677777777765555444433 334444455555555555
Q ss_pred HhHHH
Q 011939 401 ESAIA 405 (474)
Q Consensus 401 es~k~ 405 (474)
+-.++
T Consensus 125 ~~~~l 129 (138)
T 3hnw_A 125 NIVKL 129 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 59
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.92 E-value=57 Score=33.33 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 308 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaE 308 (474)
...|..||+..+.++++|+++.+..+.+++.+-.++.+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999988887666666665555443
No 60
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=37.04 E-value=52 Score=34.14 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=45.2
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCcc------------hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 011939 233 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSS------------MSLVSALHAELERARLQVNQLIQEQRSDQSEIS 300 (474)
Q Consensus 233 ~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~------------~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie 300 (474)
++..|.++++.=.+..++++.|..+|...+.+..+ +.-+..|..=|......|.+|..--.++...|.
T Consensus 43 L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~ 122 (411)
T 3ghg_C 43 LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIV 122 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55577788888888899999999999655555543 233333444444445555666555544444444
Q ss_pred HHHHHh
Q 011939 301 YLMKCF 306 (474)
Q Consensus 301 ~l~Kql 306 (474)
.|...+
T Consensus 123 ~L~~~v 128 (411)
T 3ghg_C 123 NLKEKV 128 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 61
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=36.37 E-value=2.6e+02 Score=25.74 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhh----------hc-ccHHHHHHHHHHhHHHHHHHHHhH
Q 011939 363 AVKDLDTEKRARVVIEQVCDELARD----------IN-DDKSEVEELKRESAIALEEVEKER 413 (474)
Q Consensus 363 alkelE~ERKaRellE~vCDELAke----------I~-edkaEVe~LKres~k~reE~EeER 413 (474)
.+.++. .|+.-++++.++.=+--. +. +.+.-+..|..+..+++.+.++++
T Consensus 184 ~l~~l~-~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~ 244 (265)
T 2q12_A 184 ALNTLQ-YKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDI 244 (265)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 466778888886532211 12 344445555555555555544443
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.64 E-value=1.3e+02 Score=31.64 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939 248 KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 307 (474)
Q Consensus 248 ~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~Kqla 307 (474)
.+|-..|..| ++.-.+.--+|.+|+..|...+.+|.+++.--..+..+|+...+.+.
T Consensus 103 qeLe~~l~~l---sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 103 RDLKDRVAKF---SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4444555544 22222334478888899988888888888766666666665555553
No 63
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=35.41 E-value=2e+02 Score=29.49 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.3
Q ss_pred cccHHHHHHHHhhhcC
Q 011939 103 PVSARKLAATLWEMNE 118 (474)
Q Consensus 103 ~vSARKLaAtLWE~n~ 118 (474)
.+|.-.++.++-.++.
T Consensus 109 k~~~~ei~~aIl~~D~ 124 (483)
T 2j1d_G 109 KLSNDEIKRAILTMDE 124 (483)
T ss_dssp CCCHHHHHHHHHTTST
T ss_pred CCCHHHHHHHHHccCc
Confidence 4677788888888775
No 64
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.05 E-value=78 Score=32.06 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 309 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE 309 (474)
|.+|+.||...+..+.+|+++....+.+++.+-.++.+|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777766665555555554444444
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.18 E-value=1.9e+02 Score=23.49 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 011939 320 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL 398 (474)
Q Consensus 320 ki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~L 398 (474)
....-+..+++.|+.+-+.|+.+|.-+.+|..|-.+.... -.=+|+.|+.|...-.+.+..+..|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567789999999999999999999999987765443 2335677777777655666655554
No 66
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.68 E-value=68 Score=27.80 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 011939 268 MSLVSALHAELERARLQVNQLIQEQRSDQSEISY 301 (474)
Q Consensus 268 ~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~ 301 (474)
++-+.||..||..++.+|.+|.++-...+-.++.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999888876544433333
No 67
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=31.31 E-value=3e+02 Score=24.92 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=38.7
Q ss_pred HHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 011939 288 LIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDL 367 (474)
Q Consensus 288 L~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkel 367 (474)
+..+-.....+++.|-..|..||..||.-=..-+..++ + |+..=.. ..-|...|-| ||
T Consensus 59 v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vc----e----EQqfl~~----QedL~~DL~e----------DL 116 (141)
T 3okq_A 59 VSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVC----E----EQQFLTL----QEELILDLKE----------DL 116 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHH----HHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH----H----HHHHHHH----HHHHHHHHHH----------HH
Confidence 33333344445555555667899999974333322222 2 2222222 2334444444 66
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 011939 368 DTEKRARVVIEQVCDELARD 387 (474)
Q Consensus 368 E~ERKaRellE~vCDELAke 387 (474)
++--..=.++|.+|.|-.+.
T Consensus 117 ~ka~etf~lVeq~~~eq~k~ 136 (141)
T 3okq_A 117 GKALETFDLIKLCCEEQEKN 136 (141)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666677888888877654
No 68
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=29.75 E-value=3.7e+02 Score=28.09 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhh
Q 011939 374 RVVIEQVCDELARDI 388 (474)
Q Consensus 374 RellE~vCDELAkeI 388 (474)
++-+++.|+++-.-+
T Consensus 562 ~~~~~~~~~~~~~~l 576 (605)
T 4b9q_A 562 KTAIESALTALETAL 576 (605)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555554433
No 69
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=29.01 E-value=4e+02 Score=25.65 Aligned_cols=174 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHh-----HHHHHHhh
Q 011939 270 LVSALHAELERARLQV----NQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-----EVERKLRR 340 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI----~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL-----e~ERK~Rr 340 (474)
|-..|...++..|+++ .+|..--..+-.++...+--++++- +++|...++.|++-| +.--++..
T Consensus 82 l~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eel-------r~k~~~~leeLr~~l~P~ae~~~~kl~~ 154 (273)
T 3s84_A 82 MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEF-------KVKIDQTVEELRRSLAPYAQDTQEKLNH 154 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHGGGCSSCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH--------HHHHHHhHHHHHHHHHh
Q 011939 341 RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV--------EELKRESAIALEEVEKE 412 (474)
Q Consensus 341 r~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEV--------e~LKres~k~reE~EeE 412 (474)
+++.|..+|..-..+++..+...+.+| |.-|+-..++|-..+...-.++ ..|++.....+.-++--
T Consensus 155 ~~e~L~~ql~~~a~~L~~~l~~~~eeL------r~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~ 228 (273)
T 3s84_A 155 QLEGLTFQMKKNAEELKARISASAEEL------RQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPY 228 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q ss_pred HHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHH-HHHHHHHHHH
Q 011939 413 REMIQVADVLREERAQIKLSEAKYQLEEKNAAVD-KLRSQLEAFS 456 (474)
Q Consensus 413 R~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ld-kL~~elE~FL 456 (474)
=.-++=+=+-..|-||-||.=-=.+++++.+.++ .|+.-+-+|+
T Consensus 229 ~e~~~~~l~~~~e~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 273 (273)
T 3s84_A 229 GENFNKALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLRDKVNSFF 273 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHhhhhHHHHHHHHHhhccC
No 70
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=28.89 E-value=4.4e+02 Score=26.16 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 011939 372 RARVVIEQVCDELARDINDDKSEVEELK 399 (474)
Q Consensus 372 KaRellE~vCDELAkeI~edkaEVe~LK 399 (474)
|++.-++..+.++.+-=.+|..-|....
T Consensus 168 K~~~k~~k~~~~~~~a~neY~~~l~~~N 195 (406)
T 4dyl_A 168 KAKDKYVRSLWKLFAHHNRYVLGVRAAQ 195 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666667766666554
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.75 E-value=91 Score=26.68 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHh-------------hhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 011939 387 DINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREER-------------AQIKLSEAKYQLEEKNAAVDKLRSQLE 453 (474)
Q Consensus 387 eI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREER-------------VQMKL~eAk~~lEeK~s~ldkL~~elE 453 (474)
++...+.+|+.|.+|..+++++.+ +-|.|.|-| |+|..-=|-.+.+..-..+++|+.|+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~-------~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR-------MLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 011939 454 A 454 (474)
Q Consensus 454 ~ 454 (474)
.
T Consensus 86 r 86 (100)
T 1go4_E 86 R 86 (100)
T ss_dssp H
T ss_pred H
No 72
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.74 E-value=1.7e+02 Score=25.80 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHHHhh
Q 011939 439 EEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 439 EeK~s~ldkL~~elE~FL~s 458 (474)
.+++..+.+=..+||+=|..
T Consensus 116 ~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 116 KSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555655543
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.31 E-value=3.1e+02 Score=24.26 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 272 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
.-|+.+|-+|+.-..+-+.+--+-.+-+..|+.-|.+||+.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888887777777778888888888888754
No 74
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.75 E-value=2.3e+02 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHH
Q 011939 381 CDELARDINDDKSEVEELKRESAIALE 407 (474)
Q Consensus 381 CDELAkeI~edkaEVe~LKres~k~re 407 (474)
..++-..|.+..+||+.|+.|...++.
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344467788899999999988776543
No 75
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.93 E-value=3.2e+02 Score=23.97 Aligned_cols=38 Identities=11% Similarity=0.268 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 011939 327 SIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 370 (474)
Q Consensus 327 slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~E 370 (474)
-|+.|+|.| +|.+.+|.-.-|-|+.+++.+-.++++.-
T Consensus 61 qLkse~e~E------~ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 61 ILKAELERK------MAEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666655 77777777777777777777766666544
No 76
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=26.77 E-value=6.1e+02 Score=27.08 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011939 296 QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV 375 (474)
Q Consensus 296 ~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRe 375 (474)
+.+++.-+.+++.|. .+.|..+|...-++.+.| ++.||-..+..++.++.+++.+.+......+
T Consensus 598 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 661 (695)
T 2j69_A 598 KKELVKHLPQVAHEQ-------SQVVYNAVKECFDSYERE---------VSKRINDDIVSRKSELDNLVKQKQTREINRE 661 (695)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 556666666666665 445555555555555443 5667777778888888877777666544444
Q ss_pred HH
Q 011939 376 VI 377 (474)
Q Consensus 376 ll 377 (474)
..
T Consensus 662 ~~ 663 (695)
T 2j69_A 662 SE 663 (695)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 77
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.76 E-value=93 Score=32.07 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=27.6
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCc
Q 011939 233 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSS 266 (474)
Q Consensus 233 ~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s 266 (474)
++..++++.+.-.+..+|++.+...|...+.+..
T Consensus 43 LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~ 76 (409)
T 1m1j_C 43 IEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLP 76 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 5567888999999999999999999976554443
No 78
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=26.51 E-value=1.3e+02 Score=23.84 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=22.7
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHH
Q 011939 328 IAGELEVERKLRRRFESLNKKLGKELAE 355 (474)
Q Consensus 328 lk~ELe~ERK~Rrr~E~lN~KL~~ELaE 355 (474)
++.=|+.|.+.|+++|.+=+|+.+...|
T Consensus 26 ~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 26 MKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5555889999999999999999876543
No 79
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.43 E-value=69 Score=24.26 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Q 011939 267 SMSLVSALHAELERARLQVNQLIQEQRSDQSE 298 (474)
Q Consensus 267 ~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~e 298 (474)
+.+=|-+|+.|++..+.+|.+|.++....+.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34669999999999999999999887654443
No 80
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=25.18 E-value=3.9e+02 Score=24.31 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=13.9
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 338 LRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 338 ~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
+-+.++.+..+|.++|.+++.-+.-
T Consensus 93 l~~~~e~lr~~l~kdlEelr~kL~P 117 (191)
T 1nfn_A 93 LSKELQAAQARLGADMEDVCGRLVQ 117 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4445556666666666665554433
No 81
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.71 E-value=3e+02 Score=22.78 Aligned_cols=65 Identities=25% Similarity=0.364 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHH-HHhHHHHHHhH
Q 011939 349 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEV-EKEREMIQVAD 420 (474)
Q Consensus 349 L~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe~LKres~k~reE~-EeER~MLqmAE 420 (474)
|-.+|..++..=..++++|+. +|.-..+++.+|...++|.+.|..+-.+.|.+. ...+.++..-+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~-------lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELED-------VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444432 344456788889999999999888877777663 44555555443
No 82
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=24.07 E-value=3.2e+02 Score=23.17 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHhH
Q 011939 278 LERARLQVNQLIQEQRSDQSEISYLMKCFA 307 (474)
Q Consensus 278 L~~AR~rI~eL~~E~~s~~~eie~l~Kqla 307 (474)
|--.-.-|+.|.+|..+|++|++..-.++.
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~rie 38 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKIE 38 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888887766554443
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.85 E-value=5.8e+02 Score=25.11 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHH---hhhcccHHHHHHHHHHhHHHHHHHHHhH
Q 011939 342 FESLNKKLGKELAETKHSLLKAVKDLDTEKRA-RVVIEQVCDELA---RDINDDKSEVEELKRESAIALEEVEKER 413 (474)
Q Consensus 342 ~E~lN~KL~~ELaE~Kss~~~alkelE~ERKa-RellE~vCDELA---keI~edkaEVe~LKres~k~reE~EeER 413 (474)
.+..+.=|-+.|.+++..|.++-+.--.--.. --|++-+-.+.+ +.|.|.+.||-.|.++....+.|+++-|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455556666666666655532221111000 011222222222 3577777777777777666666665543
No 84
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.79 E-value=3.7e+02 Score=25.30 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYL 302 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l 302 (474)
+..++++|..+++++....++....+.+++.+
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666655555555555555444
No 85
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=21.20 E-value=3.2e+02 Score=23.17 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 011939 376 VIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 455 (474)
Q Consensus 376 llE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~F 455 (474)
+--.+|..|.|+-.-|+.|+........++..+-.+|. +|.-.+.- |.|.+.-|-+=..-|.....+|+.|
T Consensus 11 Ikt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey-~iKkq~ev--------l~Et~~mipd~~~Rl~~a~~~L~~~ 81 (108)
T 1h7c_A 11 IKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENY-DIKKQAEI--------LQESRMMIPDCQRRLEAAYLDLQRI 81 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT-HHHHHHHH--------HHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33456777777777788887777777666665532232 22222222 2233334444445566667777888
Q ss_pred Hhhh
Q 011939 456 SRNQ 459 (474)
Q Consensus 456 L~sk 459 (474)
|.+.
T Consensus 82 l~~e 85 (108)
T 1h7c_A 82 LENE 85 (108)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8643
No 86
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.89 E-value=2e+02 Score=21.80 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 011939 342 FESLNKKLGKELAETKHSLLKAVKDLDT 369 (474)
Q Consensus 342 ~E~lN~KL~~ELaE~Kss~~~alkelE~ 369 (474)
+-.-|.||+..|.+++.-+.+.-.++++
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334888888888777666655555443
No 87
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.86 E-value=64 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhcccHHHHHHHH
Q 011939 377 IEQVCDELARDINDDKSEVEELK 399 (474)
Q Consensus 377 lE~vCDELAkeI~edkaEVe~LK 399 (474)
||+=++||-.+-.+.++||..||
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 56667777777777777777766
No 88
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.71 E-value=2.5e+02 Score=25.72 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 011939 271 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 335 (474)
Q Consensus 271 vsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~E 335 (474)
+..|+.+|...|..++.|.....-+...|+.|.+++++= +.++...--.++.||..|
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~L--------r~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESL--------GQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHh
No 89
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.64 E-value=4.1e+02 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHH
Q 011939 272 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 312 (474)
Q Consensus 272 saLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~a 312 (474)
.-|+.+|-+|+.-..+-+.+--.-.+-+..|+--|..||+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq 61 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQ 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999888888888788888899999999988865
No 90
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=20.38 E-value=21 Score=30.88 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 011939 365 KDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 399 (474)
Q Consensus 365 kelE~ERKaRellE~vCDELAkeI~edkaEVe~LK 399 (474)
++|-+|+-+|.-||++|+-|..++.+.|-++=.|.
T Consensus 70 qels~eklarkqleeln~~Lg~Els~iKl~lL~~~ 104 (110)
T 2hg7_A 70 QELSQEKLARKQLEELNKTLGNELSDIKLSLLSLE 104 (110)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556888999999999999999998887765543
No 91
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.27 E-value=3.6e+02 Score=22.11 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchh---HHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQS---EISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 334 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~---eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 334 (474)
|=..|+.++.++++.|.-|.+-+.--++ .|+.++.++..| +..+...|..+++..+.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E--------~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE--------VAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.26 E-value=2.8e+02 Score=22.94 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchh---HHHHHHHHhHHHHHHhhhh
Q 011939 267 SMSLVSALHAELERARLQVNQLIQEQRSDQS---EISYLMKCFAEEKAAWKNK 316 (474)
Q Consensus 267 ~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~---eie~l~KqlaEEK~awKsK 316 (474)
.+-.|.-|++|++.-+..-..|.++.+..+. .++.=..++.+|..+|..+
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777776666666666665554333 3455567788899998653
No 93
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=20.22 E-value=5.6e+02 Score=26.73 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 011939 367 LDTEKRARVVIEQVCDELARDI 388 (474)
Q Consensus 367 lE~ERKaRellE~vCDELAkeI 388 (474)
.+.-+.+.+-|+++|+.|+..+
T Consensus 581 ~~~~~~~~~~l~~~~~~~~~~~ 602 (605)
T 4b9q_A 581 KAAIEAKMQELAQVSQKLMEIA 602 (605)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777888876543
No 94
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.11 E-value=8.1e+02 Score=26.12 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=34.7
Q ss_pred HHHhHHHHHHhHhhh---HHhhhhhhhHhhhhhhhhh-HHHHHHHHHHHHHHhhhccCCc
Q 011939 409 VEKEREMIQVADVLR---EERAQIKLSEAKYQLEEKN-AAVDKLRSQLEAFSRNQKGKRK 464 (474)
Q Consensus 409 ~EeER~MLqmAEvWR---EERVQMKL~eAk~~lEeK~-s~ldkL~~elE~FL~sk~~~~~ 464 (474)
-+-++..-||+.-.. ..||.--+..-+..+++|. ..++..+.+|+.-+.-|+..+.
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 658 (695)
T 2j69_A 599 KELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREI 658 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355677777774333 4566666666666666663 4566677777776666654443
No 95
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=20.05 E-value=3.5e+02 Score=23.35 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 011939 379 QVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 458 (474)
Q Consensus 379 ~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL~s 458 (474)
.+|..|.|+-.-|+.|+..-.....++..+-..+-.+=+--+| |.|.+.-|-+=..-|.....+|+.||..
T Consensus 15 g~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~ev---------L~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 15 STCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENV---------LGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444444321111111111111 2223333334444555566677777775
Q ss_pred h
Q 011939 459 Q 459 (474)
Q Consensus 459 k 459 (474)
.
T Consensus 86 ~ 86 (116)
T 3mxz_A 86 L 86 (116)
T ss_dssp H
T ss_pred h
Confidence 4
Done!