Query 011939
Match_columns 474
No_of_seqs 89 out of 109
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 18:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 60.5 30 0.0022 27.7 9.9 31 337-367 71-101 (144)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 44.7 11 0.00081 28.5 4.0 40 270-309 27-66 (67)
3 d2efla1 a.238.1.4 (A:1-288) Fo 44.2 81 0.0059 26.0 23.3 43 328-370 102-144 (288)
4 d1gs9a_ a.24.1.1 (A:) Apolipop 31.0 20 0.0015 28.8 3.9 55 340-396 63-117 (144)
5 d1h7ca_ a.7.5.1 (A:) Tubulin c 27.1 1E+02 0.0074 24.2 7.5 75 377-460 9-83 (103)
6 d2efka1 a.238.1.4 (A:10-288) C 26.5 1.6E+02 0.011 24.0 24.9 11 450-460 254-264 (279)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 23.2 43 0.0031 25.7 4.4 33 269-301 8-40 (107)
8 d1j1ja_ a.118.16.1 (A:) Transl 22.2 2.1E+02 0.016 24.0 10.0 42 321-362 3-44 (217)
9 d2p90a1 c.56.8.1 (A:6-274) Hyp 18.4 1.1E+02 0.0081 26.4 6.7 58 245-309 207-264 (269)
10 d1lwma_ a.21.1.1 (A:) NHP6a {B 17.1 47 0.0034 24.7 3.3 58 232-316 34-91 (93)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=60.52 E-value=30 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.455 Sum_probs=19.3
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 011939 337 KLRRRFESLNKKLGKELAETKHSLLKAVKDL 367 (474)
Q Consensus 337 K~Rrr~E~lN~KL~~ELaE~Kss~~~alkel 367 (474)
++.+.+|.|-.+|..+|.|++.-+..++.++
T Consensus 71 ~l~~~~e~lr~~l~~~lee~r~kl~~~~eel 101 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDVRGRLVQYRGEV 101 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777666555544333
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.67 E-value=11 Score=28.47 Aligned_cols=40 Identities=33% Similarity=0.476 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH
Q 011939 270 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 309 (474)
Q Consensus 270 lvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE 309 (474)
-|-.+..||+++++.|+.|+++--..+=.+-||---||-|
T Consensus 27 sV~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA~e 66 (67)
T d1k1fa_ 27 SVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKE 66 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3888999999999999999999877666666666555543
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.22 E-value=81 Score=25.98 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 011939 328 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 370 (474)
Q Consensus 328 lk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~alkelE~E 370 (474)
+..-+.+-++.|+.+...-.++.+++......+.++.+.|..-
T Consensus 102 l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~ 144 (288)
T d2efla1 102 LARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERD 144 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555556555555555555555433
No 4
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=30.99 E-value=20 Score=28.79 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=28.8
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 011939 340 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 396 (474)
Q Consensus 340 rr~E~lN~KL~~ELaE~Kss~~~alkelE~ERKaRellE~vCDELAkeI~edkaEVe 396 (474)
.-++.+-.+|..++.+++..+...+.++... --..+++|-..+...+.+++..+.
T Consensus 63 p~~~e~~~~l~~~~e~lr~~l~~~lee~r~k--l~~~~eel~~~~~~~~ee~r~~l~ 117 (144)
T d1gs9a_ 63 PVAEETRARLSKELQAAQARLGADMEDVRGR--LVQYRGEVQAMLGQSTEELRVRLA 117 (144)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777776666665322 122233333333333445555544
No 5
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.12 E-value=1e+02 Score=24.15 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 011939 377 IEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS 456 (474)
Q Consensus 377 lE~vCDELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~eAk~~lEeK~s~ldkL~~elE~FL 456 (474)
--.+|..|.|+-.-|+.|+..-.....++..+-..|..+=+--+|.-| .+.-+-+=..-|.....+|+.||
T Consensus 9 ktgvvkRL~KE~~~Y~kE~~~q~~k~ek~k~~~~dey~iKkq~~vl~E---------s~~mipd~~~Rl~~a~~~L~~~l 79 (103)
T d1h7ca_ 9 KTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQE---------SRMMIPDCQRRLEAAYLDLQRIL 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHH---------HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHH
Confidence 345677777777778887777777766666554444444444444332 22333333344555677788888
Q ss_pred hhhc
Q 011939 457 RNQK 460 (474)
Q Consensus 457 ~sk~ 460 (474)
..-.
T Consensus 80 ~~e~ 83 (103)
T d1h7ca_ 80 ENEK 83 (103)
T ss_dssp HHCG
T ss_pred HHCC
Confidence 7633
No 6
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.55 E-value=1.6e+02 Score=24.01 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=8.0
Q ss_pred HHHHHHHhhhc
Q 011939 450 SQLEAFSRNQK 460 (474)
Q Consensus 450 ~elE~FL~sk~ 460 (474)
.|++.|+...+
T Consensus 254 ~D~~~f~~~~~ 264 (279)
T d2efka1 254 NDSHVLIELHK 264 (279)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHHHcC
Confidence 67788887654
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.22 E-value=43 Score=25.70 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 011939 269 SLVSALHAELERARLQVNQLIQEQRSDQSEISY 301 (474)
Q Consensus 269 SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~ 301 (474)
.-+..|+.+|.....++.+|+.+.+-...-++.
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999887755444443
No 8
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.21 E-value=2.1e+02 Score=24.00 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 011939 321 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 362 (474)
Q Consensus 321 i~aai~slk~ELe~ERK~Rrr~E~lN~KL~~ELaE~Kss~~~ 362 (474)
+.++..+++++|+.+-..|.++-.+-+.+...-..+-.++.+
T Consensus 3 ~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr 44 (217)
T d1j1ja_ 3 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQG 44 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998888887776666665554
No 9
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=18.35 E-value=1.1e+02 Score=26.37 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHH
Q 011939 245 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 309 (474)
Q Consensus 245 ~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEE 309 (474)
+++..|+.+|+.+.+++=. ++.|..+-+..+.+|++|.++-....+-|+.|-+++-..
T Consensus 207 ~AA~~lL~~l~~~~gl~id-------~~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~yD~~ 264 (269)
T d2p90a1 207 AATLKLLQSIADSADLNLP-------LLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSE 264 (269)
T ss_dssp HHHHHHHHHHHHHHTCCCC-------CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC-------hHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhHhhh
No 10
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.07 E-value=47 Score=24.73 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=0.0
Q ss_pred cccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHH
Q 011939 232 GVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA 311 (474)
Q Consensus 232 ~~k~r~~e~~~~L~TS~ELlkVlnriw~leeq~~s~~SlvsaLk~EL~~AR~rI~eL~~E~~s~~~eie~l~KqlaEEK~ 311 (474)
+++..++.-+.++ +.+|+.+.|..+| .++| ..|+.-+....+....++.+|..
T Consensus 34 e~r~~ik~~~p~~-~~~ei~k~l~~~W-------~~ls-------------------~~eK~~y~~~a~~~k~~y~~e~~ 86 (93)
T d1lwma_ 34 ENRDIVRSENPDI-TFGQVGKKLGEKW-------KALT-------------------PEEKQPYEAKAQADKKRYESEKE 86 (93)
T ss_dssp HHHHHHHHHCTTS-CHHHHHHHHHHHH-------HTSC-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-cHHHHHHHHHHHH-------HhCC-------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhh
Q 011939 312 AWKNK 316 (474)
Q Consensus 312 awKsK 316 (474)
.|+..
T Consensus 87 ~y~~~ 91 (93)
T d1lwma_ 87 LYNAT 91 (93)
T ss_dssp HHHHH
T ss_pred HHHhc
Done!