Query 011942
Match_columns 474
No_of_seqs 166 out of 1082
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03034 phosphoglycerate kina 100.0 6E-156 1E-160 1218.9 44.4 473 1-474 1-481 (481)
2 PLN02282 phosphoglycerate kina 100.0 6E-149 1E-153 1151.8 40.9 399 71-469 3-401 (401)
3 COG0126 Pgk 3-phosphoglycerate 100.0 2E-147 5E-152 1125.3 35.9 381 81-470 10-394 (395)
4 cd00318 Phosphoglycerate_kinas 100.0 8E-146 2E-150 1127.7 41.8 389 78-468 1-397 (397)
5 PRK00073 pgk phosphoglycerate 100.0 3E-145 6E-150 1121.3 40.3 388 76-468 2-389 (389)
6 PTZ00005 phosphoglycerate kina 100.0 1E-142 2E-147 1109.3 41.9 392 75-469 5-417 (417)
7 KOG1367 3-phosphoglycerate kin 100.0 1E-141 3E-146 1053.8 30.5 394 73-469 4-415 (416)
8 PRK13962 bifunctional phosphog 100.0 3E-140 6E-145 1139.6 41.1 391 75-469 3-394 (645)
9 PF00162 PGK: Phosphoglycerate 100.0 9E-140 2E-144 1081.0 35.8 378 77-458 1-384 (384)
10 TIGR01663 PNK-3'Pase polynucle 90.5 7.7 0.00017 43.1 15.3 200 110-334 199-450 (526)
11 TIGR03590 PseG pseudaminic aci 87.9 16 0.00034 36.7 14.3 174 87-283 1-195 (279)
12 cd04256 AAK_P5CS_ProBA AAK_P5C 67.7 11 0.00024 38.4 5.8 51 85-135 8-58 (284)
13 PRK06801 hypothetical protein; 65.8 1.1E+02 0.0023 31.6 12.4 153 114-302 87-244 (286)
14 PRK02006 murD UDP-N-acetylmura 65.2 20 0.00044 38.8 7.6 49 253-301 381-430 (498)
15 cd02068 radical_SAM_B12_BD B12 63.7 36 0.00077 29.8 7.5 73 381-460 38-116 (127)
16 PRK04302 triosephosphate isome 62.7 95 0.0021 30.1 11.0 43 116-162 77-119 (223)
17 PF10087 DUF2325: Uncharacteri 62.0 23 0.00049 30.0 5.8 39 277-334 41-79 (97)
18 PRK06988 putative formyltransf 61.7 36 0.00078 35.1 8.3 66 112-181 13-79 (312)
19 PRK00683 murD UDP-N-acetylmura 61.5 29 0.00064 36.7 7.8 51 249-299 302-353 (418)
20 TIGR00460 fmt methionyl-tRNA f 59.8 46 0.00099 34.3 8.6 82 113-195 12-94 (313)
21 COG0223 Fmt Methionyl-tRNA for 59.5 35 0.00077 35.6 7.7 76 113-220 13-90 (307)
22 COG0761 lytB 4-Hydroxy-3-methy 57.9 42 0.00092 34.9 7.8 191 74-283 57-283 (294)
23 PRK00005 fmt methionyl-tRNA fo 57.3 56 0.0012 33.5 8.8 83 112-195 11-94 (309)
24 PF13344 Hydrolase_6: Haloacid 57.3 40 0.00087 28.9 6.6 72 106-186 12-86 (101)
25 PRK14994 SAM-dependent 16S rib 53.5 67 0.0015 33.0 8.5 65 111-179 71-135 (287)
26 TIGR00290 MJ0570_dom MJ0570-re 49.1 1.8E+02 0.0039 29.0 10.5 38 355-392 143-191 (223)
27 PRK05826 pyruvate kinase; Prov 47.8 24 0.00053 38.7 4.6 300 113-436 18-394 (465)
28 cd04814 PA_M28_1 PA_M28_1: Pro 47.1 40 0.00086 31.4 5.2 58 74-133 37-99 (142)
29 PRK08187 pyruvate kinase; Vali 46.2 15 0.00034 40.5 2.8 107 107-217 134-264 (493)
30 PRK02705 murD UDP-N-acetylmura 46.0 74 0.0016 33.8 7.8 43 259-301 348-391 (459)
31 TIGR01486 HAD-SF-IIB-MPGP mann 45.8 25 0.00054 34.3 3.9 33 102-136 8-42 (256)
32 PF08645 PNK3P: Polynucleotide 45.8 37 0.00081 31.5 4.9 51 112-162 33-86 (159)
33 PRK04308 murD UDP-N-acetylmura 45.2 69 0.0015 34.1 7.4 41 259-299 342-383 (445)
34 cd04820 PA_M28_1_1 PA_M28_1_1: 44.8 45 0.00098 30.8 5.2 53 75-131 40-93 (137)
35 cd04822 PA_M28_1_3 PA_M28_1_3: 44.7 50 0.0011 31.0 5.6 59 75-135 38-101 (151)
36 PRK06247 pyruvate kinase; Prov 44.4 23 0.00049 39.1 3.7 208 114-339 20-277 (476)
37 TIGR02461 osmo_MPG_phos mannos 43.4 29 0.00062 33.8 3.9 33 102-136 8-41 (225)
38 TIGR03471 HpnJ hopanoid biosyn 43.1 95 0.0021 33.5 8.2 85 372-463 58-145 (472)
39 smart00732 YqgFc Likely ribonu 42.8 43 0.00093 27.5 4.4 59 109-168 35-95 (99)
40 PRK08125 bifunctional UDP-gluc 42.5 1.1E+02 0.0023 34.7 8.7 79 113-195 12-91 (660)
41 TIGR01656 Histidinol-ppas hist 42.2 41 0.00088 30.2 4.4 27 110-136 29-55 (147)
42 PLN02461 Probable pyruvate kin 41.7 37 0.0008 37.8 4.8 102 113-218 35-148 (511)
43 PRK04663 murD UDP-N-acetylmura 40.4 1.7E+02 0.0038 31.1 9.6 43 258-300 337-380 (438)
44 PF03808 Glyco_tran_WecB: Glyc 40.2 3.1E+02 0.0068 25.6 10.9 136 281-458 2-143 (172)
45 PRK05337 beta-hexosaminidase; 39.7 1.1E+02 0.0025 32.0 7.9 96 90-189 175-282 (337)
46 COG0647 NagD Predicted sugar p 39.5 77 0.0017 32.5 6.4 76 104-186 20-97 (269)
47 COG0626 MetC Cystathionine bet 38.3 85 0.0018 33.9 6.8 70 112-190 89-159 (396)
48 cd00311 TIM Triosephosphate is 38.1 4.1E+02 0.0089 26.7 11.2 52 116-172 76-129 (242)
49 PLN02716 nicotinate-nucleotide 36.7 57 0.0012 34.1 5.0 64 144-208 185-257 (308)
50 cd04821 PA_M28_1_2 PA_M28_1_2: 36.7 97 0.0021 29.2 6.2 62 73-136 38-104 (157)
51 cd04240 AAK_UC AAK_UC: Unchara 36.2 1.7E+02 0.0037 28.2 8.0 116 259-397 24-144 (203)
52 cd06259 YdcF-like YdcF-like. Y 35.8 1.8E+02 0.004 25.7 7.6 70 262-331 2-95 (150)
53 PRK03803 murD UDP-N-acetylmura 35.8 1.4E+02 0.0031 31.7 8.0 43 259-301 344-387 (448)
54 PLN02762 pyruvate kinase compl 35.7 38 0.00083 37.7 3.8 309 114-441 40-435 (509)
55 PRK12314 gamma-glutamyl kinase 34.8 81 0.0018 31.7 5.7 47 86-133 10-56 (266)
56 COG4100 Cystathionine beta-lya 34.5 61 0.0013 34.4 4.8 80 82-172 126-215 (416)
57 PF02310 B12-binding: B12 bind 34.3 1.7E+02 0.0037 24.7 6.9 67 382-454 51-120 (121)
58 TIGR01064 pyruv_kin pyruvate k 33.9 54 0.0012 36.0 4.6 205 114-337 16-277 (473)
59 COG0263 ProB Glutamate 5-kinas 33.8 74 0.0016 34.1 5.3 53 85-138 6-67 (369)
60 TIGR01092 P5CS delta l-pyrroli 33.7 69 0.0015 36.9 5.6 52 85-137 7-62 (715)
61 TIGR01460 HAD-SF-IIA Haloacid 33.4 1.3E+02 0.0028 29.3 6.7 76 102-186 7-87 (236)
62 cd07410 MPP_CpdB_N Escherichia 33.4 1E+02 0.0022 30.6 6.1 52 111-162 170-223 (277)
63 PRK10530 pyridoxal phosphate ( 33.2 46 0.001 32.2 3.6 23 112-136 24-46 (272)
64 TIGR00696 wecB_tagA_cpsF bacte 33.1 3.3E+02 0.0072 25.9 9.2 139 281-459 2-143 (177)
65 PRK06354 pyruvate kinase; Prov 32.8 44 0.00096 37.8 3.8 206 113-337 22-284 (590)
66 PF01902 ATP_bind_4: ATP-bindi 32.4 4.8E+02 0.01 25.8 10.5 38 355-392 143-191 (218)
67 COG1433 Uncharacterized conser 32.2 72 0.0016 29.0 4.3 77 84-183 33-109 (121)
68 PRK13111 trpA tryptophan synth 32.1 5.5E+02 0.012 26.0 13.0 160 110-299 73-236 (258)
69 COG0066 LeuD 3-isopropylmalate 31.9 14 0.0003 36.1 -0.3 54 185-244 42-103 (191)
70 PF04122 CW_binding_2: Putativ 31.4 2.7E+02 0.0059 23.0 7.5 79 104-190 3-83 (92)
71 KOG1014 17 beta-hydroxysteroid 31.3 96 0.0021 32.6 5.6 66 117-190 66-135 (312)
72 cd06556 ICL_KPHMT Members of t 30.9 2.1E+02 0.0045 28.8 7.7 100 87-210 127-232 (240)
73 PLN02765 pyruvate kinase 30.6 52 0.0011 36.8 3.8 100 114-217 43-153 (526)
74 PF13793 Pribosyltran_N: N-ter 30.3 1.2E+02 0.0027 26.9 5.5 65 82-154 44-114 (116)
75 PLN02285 methionyl-tRNA formyl 30.2 2.1E+02 0.0045 30.0 7.9 47 113-160 18-71 (334)
76 PRK09206 pyruvate kinase; Prov 30.1 73 0.0016 35.2 4.8 208 113-338 16-279 (470)
77 COG0112 GlyA Glycine/serine hy 29.4 3.4E+02 0.0073 29.7 9.4 101 187-289 90-197 (413)
78 PRK05581 ribulose-phosphate 3- 28.6 2.6E+02 0.0057 26.4 7.8 79 199-294 121-201 (220)
79 PTZ00114 Heat shock protein 60 28.5 6.2E+02 0.013 28.3 11.8 40 260-301 387-436 (555)
80 TIGR01664 DNA-3'-Pase DNA 3'-p 28.3 1.2E+02 0.0026 28.2 5.3 49 104-154 34-86 (166)
81 COG2054 Uncharacterized archae 27.0 99 0.0021 30.6 4.5 95 356-462 107-205 (212)
82 PRK07812 O-acetylhomoserine am 26.9 3.9E+02 0.0084 29.0 9.6 111 116-236 100-219 (436)
83 TIGR01087 murD UDP-N-acetylmur 26.4 2.1E+02 0.0046 30.1 7.4 54 248-301 320-374 (433)
84 TIGR01452 PGP_euk phosphoglyco 26.1 4.4E+02 0.0096 26.2 9.2 103 210-341 2-136 (279)
85 PRK10799 metal-binding protein 25.8 57 0.0012 32.5 2.8 45 116-165 199-243 (247)
86 PHA02530 pseT polynucleotide k 25.7 1.3E+02 0.0028 29.9 5.4 52 83-134 154-213 (300)
87 TIGR00730 conserved hypothetic 25.4 5.2E+02 0.011 24.6 9.1 54 361-414 98-151 (178)
88 PRK10017 colanic acid biosynth 25.3 5.6E+02 0.012 27.8 10.4 28 107-134 256-283 (426)
89 TIGR02463 MPGP_rel mannosyl-3- 25.3 79 0.0017 29.9 3.6 34 101-136 7-42 (221)
90 PRK01259 ribose-phosphate pyro 25.3 2.1E+02 0.0044 29.7 6.8 66 82-155 44-116 (309)
91 PF09587 PGA_cap: Bacterial ca 25.1 1.5E+02 0.0033 29.1 5.6 51 110-162 170-221 (250)
92 PLN02645 phosphoglycolate phos 25.1 4.4E+02 0.0096 26.8 9.2 111 201-334 20-135 (311)
93 PRK10834 vancomycin high tempe 24.8 2.1E+02 0.0046 28.9 6.6 69 254-322 39-129 (239)
94 PF00702 Hydrolase: haloacid d 24.8 1.9E+02 0.004 26.4 5.9 64 112-186 131-201 (215)
95 cd00408 DHDPS-like Dihydrodipi 24.6 3.1E+02 0.0068 27.1 7.8 54 96-157 7-64 (281)
96 PRK13402 gamma-glutamyl kinase 24.5 1.4E+02 0.0031 31.8 5.6 46 86-132 6-51 (368)
97 PLN02623 pyruvate kinase 24.3 94 0.002 35.3 4.4 203 114-337 125-383 (581)
98 PF00582 Usp: Universal stress 24.3 2.2E+02 0.0047 23.2 5.7 46 116-163 94-139 (140)
99 cd07381 MPP_CapA CapA and rela 24.3 1.1E+02 0.0025 29.6 4.5 30 106-136 157-187 (239)
100 PRK02472 murD UDP-N-acetylmura 24.0 2.4E+02 0.0052 29.8 7.2 40 259-299 342-382 (447)
101 TIGR01501 MthylAspMutase methy 23.9 2.7E+02 0.0059 25.6 6.6 89 361-455 28-128 (134)
102 PTZ00066 pyruvate kinase; Prov 23.9 1E+02 0.0022 34.5 4.5 207 114-338 53-316 (513)
103 PTZ00340 O-sialoglycoprotein e 23.8 94 0.002 33.0 4.1 39 287-344 267-305 (345)
104 PRK09424 pntA NAD(P) transhydr 23.8 88 0.0019 34.8 4.0 131 105-248 11-145 (509)
105 PRK14104 chaperonin GroEL; Pro 23.7 7.9E+02 0.017 27.5 11.5 151 146-301 231-424 (546)
106 PRK08227 autoinducer 2 aldolas 23.7 66 0.0014 32.8 2.8 51 249-313 182-232 (264)
107 cd08162 MPP_PhoA_N Synechococc 23.6 78 0.0017 32.7 3.4 23 112-134 195-218 (313)
108 cd07409 MPP_CD73_N CD73 ecto-5 23.6 80 0.0017 31.7 3.4 27 110-136 168-195 (281)
109 COG0370 FeoB Fe2+ transport sy 23.5 95 0.0021 35.7 4.3 78 103-183 87-167 (653)
110 KOG3350 Uncharacterized conser 23.5 81 0.0017 31.1 3.2 50 81-131 110-172 (217)
111 PF02421 FeoB_N: Ferrous iron 23.4 71 0.0015 30.0 2.8 67 104-174 85-152 (156)
112 PRK13982 bifunctional SbtC-lik 23.4 2.9E+02 0.0062 30.7 7.8 50 82-131 253-303 (475)
113 PRK12726 flagellar biosynthesi 23.3 6.2E+02 0.013 27.7 10.1 172 125-325 206-400 (407)
114 PF02875 Mur_ligase_C: Mur lig 22.8 1.1E+02 0.0023 25.1 3.5 35 258-292 39-79 (91)
115 PRK12849 groEL chaperonin GroE 22.4 9E+02 0.019 27.1 11.6 40 260-301 374-423 (542)
116 COG3199 Predicted inorganic po 22.4 1.1E+02 0.0025 32.6 4.3 53 236-293 56-109 (355)
117 TIGR02026 BchE magnesium-proto 22.0 2.9E+02 0.0063 30.2 7.6 70 373-449 52-124 (497)
118 cd01170 THZ_kinase 4-methyl-5- 21.9 90 0.002 30.9 3.3 56 221-294 4-59 (242)
119 PRK00553 ribose-phosphate pyro 21.7 3.7E+02 0.0081 28.2 8.0 81 82-171 53-140 (332)
120 PF06506 PrpR_N: Propionate ca 21.7 1E+02 0.0022 28.8 3.5 139 269-452 17-157 (176)
121 PRK13302 putative L-aspartate 21.5 2E+02 0.0043 29.0 5.7 25 316-340 102-126 (271)
122 PF04015 DUF362: Domain of unk 21.5 3.4E+02 0.0074 25.6 7.1 106 87-219 1-113 (206)
123 smart00854 PGA_cap Bacterial c 21.2 1.9E+02 0.0041 28.2 5.4 52 109-162 158-210 (239)
124 PRK14558 pyrH uridylate kinase 21.2 1.9E+02 0.004 28.2 5.3 49 86-134 1-49 (231)
125 KOG3420 Predicted RNA methylas 21.2 64 0.0014 31.0 2.0 33 363-395 74-127 (185)
126 PRK09250 fructose-bisphosphate 21.1 88 0.0019 33.3 3.2 72 248-330 267-344 (348)
127 PRK03958 tRNA 2'-O-methylase; 20.9 1.4E+02 0.0031 28.9 4.3 49 223-289 79-127 (176)
128 CHL00093 groEL chaperonin GroE 20.7 5.3E+02 0.011 28.7 9.3 41 259-301 372-423 (529)
129 TIGR03609 S_layer_CsaB polysac 20.7 2.8E+02 0.0062 27.5 6.7 27 107-133 187-214 (298)
130 cd02115 AAK Amino Acid Kinases 20.7 2.1E+02 0.0046 27.5 5.6 16 259-274 29-44 (248)
131 COG0469 PykF Pyruvate kinase [ 20.6 1.3E+02 0.0028 33.4 4.5 304 113-436 19-396 (477)
132 PRK03669 mannosyl-3-phosphogly 20.6 1E+02 0.0022 30.5 3.4 44 102-152 16-61 (271)
133 PRK08114 cystathionine beta-ly 20.3 5.3E+02 0.012 27.7 9.0 106 116-231 93-201 (395)
134 cd00288 Pyruvate_Kinase Pyruva 20.1 1.3E+02 0.0028 33.3 4.4 301 114-436 17-396 (480)
135 PRK13774 formimidoylglutamase; 20.1 2.4E+02 0.0053 29.0 6.1 68 362-430 62-133 (311)
136 cd07405 MPP_UshA_N Escherichia 20.0 1E+02 0.0022 31.1 3.4 26 110-135 159-185 (285)
No 1
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=6.2e-156 Score=1218.86 Aligned_cols=473 Identities=87% Similarity=1.245 Sum_probs=435.0
Q ss_pred CCCCCCccccccccccccc--------cccCCCcccccCCcccccccccCcCCcchhhhhhhhhhhcccccchhhhhccc
Q 011942 1 MASATAPTTLSLVKTAASS--------SLSSPRASFLRMPTSASRRLGFSAADPLLTCHVASRLSSIKTKGTRAVVSMAK 72 (474)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (474)
|+++++|+.+++...++.+ +..++++.+++..+++.++|. +++++..+.+.+.+++..+.........|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 79 (481)
T PLN03034 1 MASAAAPTALSLLKSTAAAASTAASRASLLPVPSTGLSATSLRRLGFS-AAADSRFSVHVASKVRSFRGKGSRGVVSMAK 79 (481)
T ss_pred CccccccchhhhhhhhhhhhhhccccccccccccccccccCccccchh-cccCccchhhhhhhhccchhcCcchhhhccc
Confidence 7787877777765333211 122234555555666665443 3578888888888877763333333335667
Q ss_pred ccccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHH
Q 011942 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRL 152 (474)
Q Consensus 73 ~si~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~L 152 (474)
++++|+++.|++|||||||||||||+|++|+|+||+||++++||||||+++||||||+||||||+++++++||+|||++|
T Consensus 80 ~tl~d~~~~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~L 159 (481)
T PLN03034 80 KSVGDLTSADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRL 159 (481)
T ss_pred CcHhhcchhhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHHH
Confidence 78888887899999999999999999866899999999999999999999999999999999999877799999999999
Q ss_pred HHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccc
Q 011942 153 SELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVT 232 (474)
Q Consensus 153 s~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~ 232 (474)
+++||++|.|++||+|++++++|++|++|||+||||+|||+||++||++|+|+||+++|||||||||++||+|||++|||
T Consensus 160 s~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~haS~vGi~ 239 (481)
T PLN03034 160 SELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVT 239 (481)
T ss_pred HHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCcHHHHHHHHhhCCEEEecchhhhHhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccc
Q 011942 233 KYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVE 312 (474)
Q Consensus 233 ~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE 312 (474)
+|++|+|+||||||||++|.+++++|+||+++|+||+||||||++|+||+++||+||+||+||||||+|+|++||+|++|
T Consensus 240 ~~l~ps~aG~LmekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE 319 (481)
T PLN03034 240 KFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVE 319 (481)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcc
Q 011942 313 EDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPM 392 (474)
Q Consensus 313 ~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPm 392 (474)
++.++.|++|+++++++|++|+||+||+|+++|+.++++++++.++||+|||++||||+|++.|+++|++|+||||||||
T Consensus 320 ~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WNGPm 399 (481)
T PLN03034 320 EDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPM 399 (481)
T ss_pred hhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCc
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred cccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccccCCC
Q 011942 393 GVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPV 472 (474)
Q Consensus 393 GvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~~~ 472 (474)
||||+++|+.||++|+++|++.++++++||||||||++|++++|+.++||||||||||+|||||||+||||++|+++|||
T Consensus 400 GvFE~~~Fa~GT~~l~~aia~~~~~~a~sIvGGGDt~aAi~~~g~~~~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~~~ 479 (481)
T PLN03034 400 GVFEFEKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDEATPV 479 (481)
T ss_pred ccccCCcchHHHHHHHHHHHHhhcCCCeEEEcCcHHHHHHHHcCCccceeEEeCcHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence 99999999999999999999987778999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011942 473 AV 474 (474)
Q Consensus 473 ~~ 474 (474)
+|
T Consensus 480 ~~ 481 (481)
T PLN03034 480 AV 481 (481)
T ss_pred cC
Confidence 86
No 2
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=5.6e-149 Score=1151.76 Aligned_cols=399 Identities=87% Similarity=1.297 Sum_probs=389.2
Q ss_pred ccccccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHH
Q 011942 71 AKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVP 150 (474)
Q Consensus 71 ~~~si~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~ 150 (474)
.|+++.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||+++++++||+|||+
T Consensus 3 ~~~~~~ti~d~d~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~ 82 (401)
T PLN02282 3 TKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVP 82 (401)
T ss_pred cccccCChhHhhccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHH
Confidence 46789999999999999999999999997558999999999999999999999999999999999998777899999999
Q ss_pred HHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccc
Q 011942 151 RLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230 (474)
Q Consensus 151 ~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vG 230 (474)
+|+++|+++|.|++||+|++++++|++|++|||+||||+|||+||++|+++|+|+||+++|||||||||+|||+|||++|
T Consensus 83 ~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~~~~~~a~~LA~l~DvyVNDAFg~aHR~haS~~g 162 (401)
T PLN02282 83 RLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEG 162 (401)
T ss_pred HHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEeccccCcccccCHHHHHHHHHHhCcEeeechhhhhhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcc
Q 011942 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310 (474)
Q Consensus 231 i~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~Sl 310 (474)
||+|++|+||||||||||++|.+++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|+
T Consensus 163 i~~~l~~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl 242 (401)
T PLN02282 163 VAKYLKPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSL 242 (401)
T ss_pred hhhhcCccccchHHHHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhh
Confidence 99999789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeC
Q 011942 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNG 390 (474)
Q Consensus 311 vE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNG 390 (474)
+|++.++.|++|+++++++|++|+||+||+|+++|+.++++++++.++||+|||++||||+|++.|+++|++|+||||||
T Consensus 243 ~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNG 322 (401)
T PLN02282 243 VEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIWNG 322 (401)
T ss_pred cChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEEC
Confidence 99999999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred cccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccc
Q 011942 391 PMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA 469 (474)
Q Consensus 391 PmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 469 (474)
||||||+++|+.||++|++++++.++++++||+|||||++|++++|+.|+||||||||||+|||||||+||||++|++.
T Consensus 323 P~GvfE~~~F~~GT~~l~~aia~~t~~~a~sivGGGdt~aA~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgi~aL~~~ 401 (401)
T PLN02282 323 PMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401 (401)
T ss_pred CcCCccCcchhHHHHHHHHHHHHhhcCCCEEEEeCcHHHHHHHHcCCcCCceEEeCchHHHHHHHcCCCcchHHHhhcC
Confidence 9999999999999999999999987778999999999999999999999999999999999999999999999999863
No 3
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-147 Score=1125.32 Aligned_cols=381 Identities=62% Similarity=0.970 Sum_probs=369.6
Q ss_pred CCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCce
Q 011942 81 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQV 160 (474)
Q Consensus 81 ~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V 160 (474)
.+++|||||||||||||+++ |+|+||+||++++||||||+++||||||+||||||+++++++||+|||++|+++||++|
T Consensus 10 ~~~~gK~VlvRvD~NvP~~d-G~I~dd~RI~a~lpTIk~l~~~ga~Vvl~SHlGRPk~~~~~~SL~pva~~Ls~ll~~~V 88 (395)
T COG0126 10 LDLAGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRPKEYSDKTSLEPVAKRLSELLGKEV 88 (395)
T ss_pred hcccCCEEEEEeccCCcccC-CeeCCcHHHHHhhHHHHHHHhCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHhcCCce
Confidence 46999999999999999986 99999999999999999999999999999999999887899999999999999999999
Q ss_pred eeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHH----HHHHHhhcCCEEeecccccccccCccccccccccC
Q 011942 161 VKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPE----FAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLK 236 (474)
Q Consensus 161 ~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~----fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l~ 236 (474)
+|++||+|++++++|++|++|||+||||+|||+||++|+++ |+|+||+|+|||||||||||||+|||++||++++
T Consensus 89 ~f~~d~~g~~a~~~v~~l~~GevlLLEN~RF~~~E~~~d~~~~~~l~k~la~l~DvfVnDAFgtAHRahaS~~g~~~~l- 167 (395)
T COG0126 89 KFVDDCVGPEARQAVAELKDGEVLLLENVRFYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTAHRAHASTVGFAKFL- 167 (395)
T ss_pred EecccccCHHHHHHHhccCCCcEEEEeeccccccccCcchhhHHHHHHHHHhhcCEEEechhHHHHhhccchhhhhhhc-
Confidence 99999999999999999999999999999999999988776 9999999999999999999999999999999998
Q ss_pred ccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCch
Q 011942 237 PSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKL 316 (474)
Q Consensus 237 ~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~ 316 (474)
|+||||||||||++|.+++++|+||+++|+||+||||||++|+||+++||+|+|||+||||||+|+|++||+|++|.+.+
T Consensus 168 ps~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~ 247 (395)
T COG0126 168 PSAAGFLMEKELDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLI 247 (395)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcccccC
Q 011942 317 DLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFE 396 (474)
Q Consensus 317 ~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvfE 396 (474)
+.|++||+++++ +|+||+|++|+++|+.+.....++ +||++||++||||+|++.|+++|++||||||||||||||
T Consensus 248 ~~Ak~ll~k~~~---~I~lPvD~~v~~~f~~~~~~~~~~--~i~~~~~~lDIGp~Ti~~~~~~i~~AktivwNGP~GVfE 322 (395)
T COG0126 248 DGAKELLEKAKD---KIVLPVDVVVAKEFSRDAPATVKL--EIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFE 322 (395)
T ss_pred HHHHHHHHHhCC---cEECcceeEEcccccccccccccc--CCCCCccccccCHHHHHHHHHHHhhCCEEEEeCCcccee
Confidence 999999999977 799999999999998887766655 999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccccC
Q 011942 397 FDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEAT 470 (474)
Q Consensus 397 ~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~ 470 (474)
+++|++||++++++++++ .++|||+|||||++|++++|+.|+||||||||||||||||||+||||++|++++
T Consensus 323 ~~~Fa~GT~~v~~aia~~--~~a~SiiGGGdt~aAi~~~G~~d~~shISTGGGAsLe~leGk~LPgv~aL~~~~ 394 (395)
T COG0126 323 FENFAKGTEEVAKAIAKS--SGAFSIIGGGDTAAAIDKLGLADKISHISTGGGASLEFLEGKELPGVEALEESA 394 (395)
T ss_pred cchhhhhHHHHHHHHHhc--CCCeEEECCcHHHHHHHHcCccccCceEecCchHHHHHhcCCCcchHHHHhhcc
Confidence 999999999999999997 368999999999999999999999999999999999999999999999999875
No 4
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=8.4e-146 Score=1127.72 Aligned_cols=389 Identities=65% Similarity=1.036 Sum_probs=378.7
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHHHHh
Q 011942 78 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELL 156 (474)
Q Consensus 78 l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg-~~~~~SL~pva~~Ls~lL 156 (474)
|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||++ .++++||+|||++|+++|
T Consensus 1 i~d~~~~gK~VlvRvD~NvPi~~-g~I~dd~RI~a~lpTI~~l~~~gakvvl~SHlGRP~g~~~~~~SL~~va~~L~~lL 79 (397)
T cd00318 1 IDDLDLKGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEQGAKVVLLSHLGRPKGEPNEKYSLAPVAKALSELL 79 (397)
T ss_pred CCccccCCCEEEEEeccCCCCcC-CeECChHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999975 8999999999999999999999999999999999987 567899999999999999
Q ss_pred CCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccC-------cHHHHHHHhhcCCEEeecccccccccCcccc
Q 011942 157 GIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN-------DPEFAKKLASLADLYVNDAFGTAHRAHASTE 229 (474)
Q Consensus 157 ~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~n-------d~~fak~LA~l~DiyVNDAFgtaHR~haS~v 229 (474)
|++|+|++||+|++++++|++|++||||||||+|||+||++| +++|+++||+++|||||||||+|||+|||++
T Consensus 80 ~~~V~f~~d~~g~~~~~~i~~l~~GeIlLLEN~RF~~~E~~~~~~e~~~~~~~a~~LA~l~DiyVNDAFg~aHR~haS~v 159 (397)
T cd00318 80 GQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEEGKRDDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMV 159 (397)
T ss_pred CCCcEECCCCCCHHHHHHHhcCCCCcEEEEeccCccccccccCCcchhhHHHHHHHHHHhCCEEEEcchhhhhhcccchh
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred ccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCc
Q 011942 230 GVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSS 309 (474)
Q Consensus 230 Gi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~S 309 (474)
||++++ |+|||+||||||++|.+++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|
T Consensus 160 gi~~~~-~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~s 238 (397)
T cd00318 160 GIALLL-PSAAGFLMEKELKYLAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKS 238 (397)
T ss_pred hhhhhh-hhhHHHHHHHHHHHHHHHHcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCcc
Confidence 999977 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEe
Q 011942 310 LVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWN 389 (474)
Q Consensus 310 lvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WN 389 (474)
++|++.++.|++|+++++++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++|+|||||
T Consensus 239 l~e~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wN 318 (397)
T cd00318 239 LFEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAKTIVWN 318 (397)
T ss_pred ccChhhHHHHHHHHHHhHhcCCEEECCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEE
Confidence 99999999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred CcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 011942 390 GPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468 (474)
Q Consensus 390 GPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 468 (474)
|||||||+++|++||++|++++++.++++++||||||||++|++++|+.|+||||||||||+|||||||+||||++|++
T Consensus 319 GP~GvfE~~~F~~GT~~l~~aia~~~~~~a~sivGGGdt~aa~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgi~aL~~ 397 (397)
T cd00318 319 GPMGVFEFPAFAKGTKAIADAIAAATKAGAFSIIGGGDTAAAAEKFGLADKISHVSTGGGASLELLEGKELPGVAALEE 397 (397)
T ss_pred CCCcCccCCcccHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCceEEcCchHHHHHHHcCCCCchHHhhcC
Confidence 9999999999999999999999998766899999999999999999999999999999999999999999999999974
No 5
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=2.8e-145 Score=1121.34 Aligned_cols=388 Identities=64% Similarity=1.011 Sum_probs=376.9
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH
Q 011942 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL 155 (474)
Q Consensus 76 ~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~l 155 (474)
.+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||++|+++
T Consensus 2 ~tl~d~d~~gK~VlvRvD~NvPi~~-g~I~dd~RI~~~lpTI~~l~~~gakvvl~sH~gRP~g~~~~~SL~~va~~L~~l 80 (389)
T PRK00073 2 KTLDDLDLKGKRVLVRVDFNVPVKD-GKITDDTRIRAALPTIKYLLEKGAKVILLSHLGRPKGEDPEFSLAPVAKRLSEL 80 (389)
T ss_pred CchHHcccCCCEEEEEeccCCCCcC-CcCCChHhHHHHHHHHHHHHHCCCeEEEEEecCCCCCCCCCcCHHHHHHHHHHH
Confidence 4566679999999999999999975 899999999999999999999999999999999998866689999999999999
Q ss_pred hCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccccc
Q 011942 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL 235 (474)
Q Consensus 156 L~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l 235 (474)
|+++|+|++||+|++++++|++|++|||+||||+|||+||++||++|+|+||++||+|||||||+|||+|||++|||+|+
T Consensus 81 L~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~Rf~~~E~~~d~~~a~~LA~l~DiyVNDAFg~aHR~haS~vgi~~~l 160 (389)
T PRK00073 81 LGKEVKFVDDCIGEEAREAIAALKDGEVLLLENVRFNKGEEKNDPELAKKLASLGDVFVNDAFGTAHRAHASTVGIAKFL 160 (389)
T ss_pred hCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCHHHHHHHHHHhCCEEEECchhhhhhcccchhchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc
Q 011942 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK 315 (474)
Q Consensus 236 ~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~ 315 (474)
+++|||+||||||++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.
T Consensus 161 p~~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~ 240 (389)
T PRK00073 161 KPAAAGFLMEKELEALGKALENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDL 240 (389)
T ss_pred chhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhh
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCccccc
Q 011942 316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVF 395 (474)
Q Consensus 316 ~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvf 395 (474)
++.|++|+++++++|++|+||+|++|+++|+ ++++.+++.++||+|||++||||+|++.|+++|++|+|||||||||||
T Consensus 241 i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~-~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~Gvf 319 (389)
T PRK00073 241 IDTAKELLEKAKEKGVKIPLPVDVVVAKEFS-DAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVF 319 (389)
T ss_pred HHHHHHHHHHHHhcCCEEECCCeeEEeeccC-CCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCCcc
Confidence 9999999999999999999999999999997 777788889999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 011942 396 EFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468 (474)
Q Consensus 396 E~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 468 (474)
|+++|++||+++++++++++ ++||||||||++|++++|+.++||||||||||+|||||||+||||++|++
T Consensus 320 E~~~F~~GT~~l~~aia~~~---a~sivGGGdt~aa~~~~g~~~~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 389 (389)
T PRK00073 320 EFENFAKGTKAVAKAIAEST---AFSIIGGGDTAAAVEKLGLADKFSHISTGGGASLEFLEGKELPGVAALEE 389 (389)
T ss_pred ccccchHHHHHHHHHHHhcC---CeEEEcCCHHHHHHHHcCCCCCccEEcCCcHHHHHHHcCCCcchHHHhcC
Confidence 99999999999999999864 69999999999999999999999999999999999999999999999974
No 6
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.2e-142 Score=1109.26 Aligned_cols=392 Identities=54% Similarity=0.900 Sum_probs=373.6
Q ss_pred ccCccCCC--CCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhhHH
Q 011942 75 VGELSGAD--LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLVP 150 (474)
Q Consensus 75 i~~l~d~d--l~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg-~~~~~SL~pva~ 150 (474)
+.+|+|+| ++|||||||||||||++ +|+|+||+||++++|||+||+++||| |||+||||||++ +++++||+|||+
T Consensus 5 ~~ti~d~~~~~~gK~VllRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~L~~~gak~vvl~SHlGRP~g~~~~~~SL~~va~ 83 (417)
T PTZ00005 5 KLGIDDVDDQLKGKRVLIRVDFNVPIK-EGVIKDATRIKATLPTIKYLLEQGAKSVVLMSHLGRPDGRRVEKYSLKPVVP 83 (417)
T ss_pred cCcHHHhhhccCCCEEEEEecCCCCCc-CCcCCChHhHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCcCcccCHHHHHH
Confidence 34555557 99999999999999997 58999999999999999999999997 999999999987 567899999999
Q ss_pred HHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCcccccc-----------CcHH----HHHHHhhcCCEEee
Q 011942 151 RLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEK-----------NDPE----FAKKLASLADLYVN 215 (474)
Q Consensus 151 ~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~-----------nd~~----fak~LA~l~DiyVN 215 (474)
+|+++|+++|+|++||+|+.++++|++|++||||||||||||+||++ |+++ |+++||+|||||||
T Consensus 84 ~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~GeVlLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVN 163 (417)
T PTZ00005 84 KLEELLGKKVTFLNDCVGPEVEEACANAKNGSVILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVN 163 (417)
T ss_pred HHHHHHCCCeEECCCCCCHHHHHHHHcCCCCCEEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEe
Confidence 99999999999999999999999999999999999999999999984 5554 99999999999999
Q ss_pred cccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHH
Q 011942 216 DAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMI 295 (474)
Q Consensus 216 DAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma 295 (474)
||||+|||+|||++|||+ +++||||||||||++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||
T Consensus 164 DAFg~aHR~haS~~gi~~--~~s~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma 241 (417)
T PTZ00005 164 DAFGTAHRAHSSMVGVDL--PVKVAGFLMKKELDYFSKALENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMA 241 (417)
T ss_pred cchhhhhhhcccccccCC--ccchhhHHHHHHHHHHHHHhcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHH
Confidence 999999999999999997 358999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEE-eCCCCCCCCcccccChhHH
Q 011942 296 FTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVV-PATAIPDGWMGLDIGPDSV 373 (474)
Q Consensus 296 ~tFL~A-~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v-~~~~Ip~~~~~lDIGp~Ti 373 (474)
||||+| +|++||+|++|++.++.|++|+++++++|++|+||+|++|+++|+.++++.++ +..+||+|||++||||+|+
T Consensus 242 ~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti 321 (417)
T PTZ00005 242 FTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSI 321 (417)
T ss_pred HHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHH
Confidence 999999 68999999999999999999999999999999999999999999888877666 5678999999999999999
Q ss_pred HHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHH
Q 011942 374 KTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLE 453 (474)
Q Consensus 374 ~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le 453 (474)
+.|+++|++||||||||||||||+++|+.||++|+++|++.++++++||+|||||++|++++|+.++||||||||||+||
T Consensus 322 ~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia~~t~~~a~sivGGGdt~aAi~~~g~~~~~shvSTGGGA~Le 401 (417)
T PTZ00005 322 EEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVVKATEKGAITIVGGGDTASLVEKTGAANKVSHVSTGGGASLE 401 (417)
T ss_pred HHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHHHhccCCCEEEEeCcHHHHHHHHcCCCCCCceEcCchHHHHH
Confidence 99999999999999999999999999999999999999997766899999999999999999999999999999999999
Q ss_pred hhcCCCCchhhccccc
Q 011942 454 LLEGKELPGVVALDEA 469 (474)
Q Consensus 454 ~LeGk~LPgv~aL~~~ 469 (474)
|||||+||||++|+++
T Consensus 402 ~LeGk~LPgv~aL~~~ 417 (417)
T PTZ00005 402 LLEGKELPGVVALSNK 417 (417)
T ss_pred HHcCCCcchHHHhhcC
Confidence 9999999999999863
No 7
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-141 Score=1053.83 Aligned_cols=394 Identities=62% Similarity=0.986 Sum_probs=380.3
Q ss_pred ccccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhhHH
Q 011942 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLVP 150 (474)
Q Consensus 73 ~si~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg-~~~~~SL~pva~ 150 (474)
.+..+|+++|++|||||+||||||||++ ++|+|++||++++|||||++++|+| |||+||||||+| ++++|||+|+|.
T Consensus 4 ~~klti~~~dl~GKrVf~RVDfNVPl~d-~~Itnn~RI~aalPtIky~l~~~~k~VvL~SHLGRP~G~~~~kySL~Pva~ 82 (416)
T KOG1367|consen 4 SSKLTIDNLDLKGKRVFIRVDFNVPLKD-NKITNNQRIVAALPTIKYLLSNGAKSVVLMSHLGRPKGVRNKKYSLAPVAP 82 (416)
T ss_pred ccccccccccccCcEEEEEEeccccccC-CeecccceeeecccHHHHHHhCCCcEEEEhhhcCCCCCCCCccccccchHH
Confidence 4556667779999999999999999985 6899999999999999999999999 999999999999 689999999999
Q ss_pred HHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcH--------------HHHHHHhhcCCEEeec
Q 011942 151 RLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP--------------EFAKKLASLADLYVND 216 (474)
Q Consensus 151 ~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~--------------~fak~LA~l~DiyVND 216 (474)
+|+++||++|.|.+||+|+++++++++..+|.|+||||||||.|||.+++ +|++.|++++||||||
T Consensus 83 eLk~lLg~~v~flddCvg~eVe~a~~~p~~G~viLLENlRfy~eEEg~~~~~~~~~~a~~~~v~~fr~~l~~l~DvyVnD 162 (416)
T KOG1367|consen 83 ELKSLLGKEVVFLDDCVGPEVEKAVASPAPGSVILLENLRFYVEEEGKGKDDSGKKVADPAKVKEFRASLASLGDVYVND 162 (416)
T ss_pred HHHHHhCcceeeecccccHHHHHHhcCCCCCcEEEeecceeehhhhcCCccccccccCCHHHHHHHHHHHHhhccEEeec
Confidence 99999999999999999999999999999999999999999999997654 7999999999999999
Q ss_pred ccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHH
Q 011942 217 AFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIF 296 (474)
Q Consensus 217 AFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~ 296 (474)
||||+||+|+||+|+.. +.+++||||+|||+|+.+++++|.|||+||+||+||+|||++|+||++|||.+||||||||
T Consensus 163 AFGtaHRahsSm~g~~~--~~~~aGfLl~KEL~yf~kalenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaf 240 (416)
T KOG1367|consen 163 AFGTAHRAHSSMVGVGL--PQSAAGFLLQKELDYFAKALENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAF 240 (416)
T ss_pred ccccchhccccccccCC--chhhhhHHHHHHHHHHHHHHcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceee
Confidence 99999999999999996 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCC-CCCCCCcccccChhHHH
Q 011942 297 TFYKAQ-GISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPAT-AIPDGWMGLDIGPDSVK 374 (474)
Q Consensus 297 tFL~A~-G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~-~Ip~~~~~lDIGp~Ti~ 374 (474)
|||+++ |++||+|++|++..+.+++|+++|+++|++|+||+||+++|+|+++++...++.. .||+|||+|||||+|++
T Consensus 241 tFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k 320 (416)
T KOG1367|consen 241 TFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRILLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIK 320 (416)
T ss_pred hHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEEEeeeeeeeeccccCccccceeccccCCCCCccccccChHHHH
Confidence 999996 6999999999999999999999999999999999999999999999988887765 79999999999999999
Q ss_pred HHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHh
Q 011942 375 TFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLEL 454 (474)
Q Consensus 375 ~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~ 454 (474)
.|++.+.+|||||||||+||||++.|++||+++++++.+++++|++||||||||++|++++|.+|++|||||||||+||+
T Consensus 321 ~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v~~t~~G~~tiiGGGDTata~~k~g~~dk~ShVSTGGGasLeL 400 (416)
T KOG1367|consen 321 MFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALVKLTGKGVTTIIGGGDTATACKKFGTEDKVSHVSTGGGASLEL 400 (416)
T ss_pred HHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHHHHhcCCcEEEEcCCcHHHHHHHhCcccceeeeecCCceehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhccccc
Q 011942 455 LEGKELPGVVALDEA 469 (474)
Q Consensus 455 LeGk~LPgv~aL~~~ 469 (474)
||||.||||.+|++.
T Consensus 401 LeGK~LPGv~aLs~~ 415 (416)
T KOG1367|consen 401 LEGKVLPGVDALSEA 415 (416)
T ss_pred hcCCcCcchhhhccC
Confidence 999999999999875
No 8
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=3e-140 Score=1139.59 Aligned_cols=391 Identities=66% Similarity=1.051 Sum_probs=379.3
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHH
Q 011942 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLS 153 (474)
Q Consensus 75 i~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg-~~~~~SL~pva~~Ls 153 (474)
+++|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||++ .++++||+|||++|+
T Consensus 3 ~~ti~d~d~~gK~VlvRvD~NvP~~~~g~i~dd~RI~~~lpTI~~l~~~gakvvl~SH~gRP~~~~~~~~SL~~va~~L~ 82 (645)
T PRK13962 3 KKTIRDIDVKGKRVIVRVDFNVPLDENGNITDDTRIRAALPTIKYLLDHGAKVILVSHLGRPKGEFDPKFSMAPVAKRLS 82 (645)
T ss_pred CCchhhhccCCCEEEEEecCCCCcCCCCcCCCcHhHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCccCCHHHHHHHHH
Confidence 4566677999999999999999997458999999999999999999999999999999999987 567899999999999
Q ss_pred HHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccc
Q 011942 154 ELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233 (474)
Q Consensus 154 ~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~ 233 (474)
++||++|.|++||+|++++++|++|++||||||||+|||+||++||++|+++||+|+|+|||||||+|||+|||++||++
T Consensus 83 ~~L~~~V~f~~d~~g~~~~~~i~~l~~GeilLLEN~Rf~~~E~~~d~~~~~~LA~l~DvyVNDAFg~aHR~haS~~gi~~ 162 (645)
T PRK13962 83 ELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENVRFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAHASTAGVAE 162 (645)
T ss_pred HHHCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcccccCHHHHHHHHHHhCCEEEechhhhhhhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCccccc
Q 011942 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEE 313 (474)
Q Consensus 234 ~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~ 313 (474)
|+ |+||||||||||++|++++++|+||+++|+||+||||||++|+||+++||+|++||+||||||+|+|++||+|++|+
T Consensus 163 ~l-p~~aG~lmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~ 241 (645)
T PRK13962 163 YL-PAVAGFLMEKEIEFLGKALANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEE 241 (645)
T ss_pred hh-hhhhhHHHHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcCh
Confidence 98 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCccc
Q 011942 314 DKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMG 393 (474)
Q Consensus 314 ~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmG 393 (474)
+.++.|++||++++++|++|+||+|++|+++|+.++++.+++.++||+|||++||||+|++.|+++|++|+|||||||||
T Consensus 242 ~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~G 321 (645)
T PRK13962 242 DKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPMG 321 (645)
T ss_pred hhHHHHHHHHHHHHhcCCEEECCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred ccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccc
Q 011942 394 VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA 469 (474)
Q Consensus 394 vfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 469 (474)
|||+++|+.||++|+++++++ +++||+|||||++|++++|+.|+||||||||||+|||||||+||||++|+++
T Consensus 322 vfE~~~F~~GT~~l~~aia~~---~~~svvGGGdt~aa~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgv~aL~~s 394 (645)
T PRK13962 322 VFEFDNFAEGTRAVAEAVAES---GAITIIGGGDSAAAVEKLGFADKMSHISTGGGASLEFLEGKVLPGIACLLDK 394 (645)
T ss_pred cccCCCchHHHHHHHHHHHhc---CCeEEECchHHHHHHHHcCCccCceEEcCChHHHHHHHcCCccHHHHHHhhc
Confidence 999999999999999999974 5799999999999999999999999999999999999999999999999764
No 9
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=8.8e-140 Score=1080.97 Aligned_cols=378 Identities=61% Similarity=0.990 Sum_probs=345.4
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCC--CCCCCCChhhhHHHHHH
Q 011942 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSE 154 (474)
Q Consensus 77 ~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPk--g~~~~~SL~pva~~Ls~ 154 (474)
||+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+ ++++++||+|||++|++
T Consensus 1 Ti~d~d~~gK~VlvRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~ 79 (384)
T PF00162_consen 1 TIDDLDLKGKRVLVRVDFNVPIK-NGKITDDTRIRAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSK 79 (384)
T ss_dssp BGGGS--TTEEEEEEE-----EE-TTEES-THHHHHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHH
T ss_pred CccccCcCCCEEEEEeCCCCCcC-CCcCCCcchHHHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHH
Confidence 57788999999999999999994 6999999999999999999999999999999999998 47789999999999999
Q ss_pred HhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccc----cCcHHHHHHHhhcCCEEeecccccccccCccccc
Q 011942 155 LLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230 (474)
Q Consensus 155 lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~----~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vG 230 (474)
+||++|.|++||+|++++++|++|++||||||||+|||+||+ +|++.|+++||+++|+|||||||+|||+|||++|
T Consensus 80 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLENlRf~~eE~~~~~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vg 159 (384)
T PF00162_consen 80 LLGKPVKFVDDCIGEEAEEAIESLKPGEILLLENLRFYPEEEGKKEKNDTEFARKLASLADVYVNDAFGTAHRAHASTVG 159 (384)
T ss_dssp HHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESSGGGSTTTTSEEHHTHHHHHHHHHTT-SEEEEESGGGTTS--TTTTT
T ss_pred HhCCCeeeccccCCHHHHHHHhccCCCCEEEEeeeccccccccccccccHHHHHHHHHhCCEEEEcCccchhcCCCCccc
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcc
Q 011942 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310 (474)
Q Consensus 231 i~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~Sl 310 (474)
||++++|+|||+||||||++|++++++|+||+++|+||+||||||++|++|+++||+|++||+||||||+|+|++||+|+
T Consensus 160 i~~~l~ps~aG~lmekEl~~L~~~~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~ 239 (384)
T PF00162_consen 160 IPKFLKPSAAGFLMEKELEALSKVLENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSL 239 (384)
T ss_dssp GGGTSSEEEE-HHHHHHHHHHHHHHHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSS
T ss_pred chhccchhhHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeC
Q 011942 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNG 390 (474)
Q Consensus 311 vE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNG 390 (474)
+|++.++.|++|+++++++|++|+||+||+|+++|+.+++.++++.++||+|||++||||+|++.|+++|++|+||||||
T Consensus 240 ~e~~~i~~a~~ll~~~~~~g~~i~lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktv~wNG 319 (384)
T PF00162_consen 240 VEEDLIEEAKELLEKAKDRGVKIVLPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAKTVFWNG 319 (384)
T ss_dssp CHGGGHHHHHHHHHHHHHTT-EEE--SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-SEEEEES
T ss_pred hhhhhHHHHHHHHHHHHhcCceEEEEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCCeEEEEC
Confidence 99999999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred cccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCC
Q 011942 391 PMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGK 458 (474)
Q Consensus 391 PmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk 458 (474)
|||+||+++|++||++|+++++++ +++||+|||||++|++++|+.|+||||||||||+|+|||||
T Consensus 320 P~GvfE~~~F~~GT~~l~~aia~~---~a~sivGGGdt~~a~~~~g~~~~~shvSTGGGA~L~~LeGk 384 (384)
T PF00162_consen 320 PMGVFEIENFAEGTRALAKAIAKS---GAFSIVGGGDTAAAIKKFGLADKFSHVSTGGGAFLEFLEGK 384 (384)
T ss_dssp -SS-TTSGGGCHHHHHHHHHHHHH---TSEEEEESHHHHHHHHHTTGGGGSSEEESSSHHHHHHHTTS
T ss_pred CcccCchhhhhHHHHHHHHHHHhc---CCeEEEcccHHHHHHHhcCcccceeEEecCcHHHHHHhcCC
Confidence 999999999999999999999998 67999999999999999999999999999999999999997
No 10
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.48 E-value=7.7 Score=43.11 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=108.2
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCCC-CCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEec
Q 011942 110 IRAAVPTIKHLIQNGAKVILSSHLGRPK-GVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaKvVL~SHlGRPk-g~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLEN 188 (474)
.....++|+.|.++|.+++|+|.|+... |+...-.+...++.+-+.+|.++.. ++++. +
T Consensus 199 ~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdv---iia~~-----------------~ 258 (526)
T TIGR01663 199 FPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQV---FIAIG-----------------A 258 (526)
T ss_pred ccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEE---EEeCC-----------------C
Confidence 3678889999999999999999998763 3322223333355555556766433 22211 0
Q ss_pred ccCccccccCcHHHHHHHhhcC----------CEEeeccc----------------ccccccCccccccccccCcc-chh
Q 011942 189 VRFYKEEEKNDPEFAKKLASLA----------DLYVNDAF----------------GTAHRAHASTEGVTKYLKPS-VAG 241 (474)
Q Consensus 189 lRF~~eE~~nd~~fak~LA~l~----------DiyVNDAF----------------gtaHR~haS~vGi~~~l~~s-~aG 241 (474)
. .-.|.++.+-..+..-. =+||-|+= +++-|.-|-++||.=|-|.. +.|
T Consensus 259 ~----~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~~~~D~s~~D~~FA~n~gi~F~tPee~Fl~ 334 (526)
T TIGR01663 259 G----FYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGKKKKDFSCADRLFAANLGIPFATPEEFFLG 334 (526)
T ss_pred C----CCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCCCcCCCChhhHHHHHHcCCcccChHHHhCC
Confidence 0 01144555444443322 24888873 34445556667775332211 111
Q ss_pred hh---HHH------HHHHHHh------hhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEE-----chHHHHHH-HH
Q 011942 242 FL---LQK------ELDYLVG------AVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLL-----GGGMIFTF-YK 300 (474)
Q Consensus 242 ~L---mek------El~~L~~------~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lli-----GG~ma~tF-L~ 300 (474)
.- +.+ .+..... ....+.+|.+.|+.|..=|-|=...+.++.....+++ |- -.... ..
T Consensus 335 ~~~~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~-~~~~~~~a 413 (526)
T TIGR01663 335 KPAAGFEKPAFDPRSVQDQGPLCDPDDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS-TQNCLTAC 413 (526)
T ss_pred CCcccccccCCCchhhcccccccCCcccccCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH-HHHHHHHH
Confidence 00 000 0100000 1124578999999999999999999999876444443 32 11101 11
Q ss_pred HcCCccCCcc-cccCc--hHHHHHHHHHHhhCCCeEE
Q 011942 301 AQGISVGSSL-VEEDK--LDLATTLLAKAKAKGVNLL 334 (474)
Q Consensus 301 A~G~~iG~Sl-vE~~~--~~~a~~il~~a~~~g~kIi 334 (474)
.+-+.-|+|. ++.-. .+.-+..++.|+++|+.+.
T Consensus 414 ~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~ 450 (526)
T TIGR01663 414 ERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCR 450 (526)
T ss_pred HHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1234455554 44333 4456777888999988764
No 11
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=87.88 E-value=16 Score=36.69 Aligned_cols=174 Identities=19% Similarity=0.222 Sum_probs=90.9
Q ss_pred eEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCC
Q 011942 87 KVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDC 166 (474)
Q Consensus 87 ~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ 166 (474)
+|++|+|-+.-+. -| -|.+++-=-+.|.++|..|+.+...... ...+.|+ .-|.+|...++.
T Consensus 1 ~i~ir~Da~~~iG-~G------Hv~Rcl~LA~~l~~~g~~v~f~~~~~~~----------~~~~~i~-~~g~~v~~~~~~ 62 (279)
T TIGR03590 1 KILFRADASSEIG-LG------HVMRCLTLARALHAQGAEVAFACKPLPG----------DLIDLLL-SAGFPVYELPDE 62 (279)
T ss_pred CEEEEecCCcccc-cc------HHHHHHHHHHHHHHCCCEEEEEeCCCCH----------HHHHHHH-HcCCeEEEecCC
Confidence 5899999998774 35 4677887777888899998887654311 1122332 234556555443
Q ss_pred CCH--H---HHHHHhcCCCCcEEEEecccCccccccCcH----------HHHHHHhhcCCEEeecccccccccCcccccc
Q 011942 167 IGP--E---VEKLVASLPEGGVLLLENVRFYKEEEKNDP----------EFAKKLASLADLYVNDAFGTAHRAHASTEGV 231 (474)
Q Consensus 167 ig~--~---v~~~i~~l~~GeVlLLENlRF~~eE~~nd~----------~fak~LA~l~DiyVNDAFgtaHR~haS~vGi 231 (474)
-++ + ..+.+++. .-|++++++-++..+..+.-. ++.. -.-.+|+++|-.++.-.-.+... +
T Consensus 63 ~~~~~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~-~~~~~D~vin~~~~~~~~~y~~~--~ 138 (279)
T TIGR03590 63 SSRYDDALELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD-RPHDCDLLLDQNLGADASDYQGL--V 138 (279)
T ss_pred CchhhhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC-CCcCCCEEEeCCCCcCHhHhccc--C
Confidence 221 2 23334433 236777777766544321100 1110 01267888887665221111110 1
Q ss_pred ccccCccchhh---hHHHHHHHHHhhhc-CC-CCCeEEEecCCcccc-hHHHHHHHHH
Q 011942 232 TKYLKPSVAGF---LLQKELDYLVGAVS-SP-KRPFAAIVGGSKVSS-KIGVIESLLE 283 (474)
Q Consensus 232 ~~~l~~s~aG~---LmekEl~~L~~~~~-~p-~rP~vaIlGGaKvsd-KI~vi~~Ll~ 283 (474)
+... .-+.|. ++.+|.....+... .+ .+..+..+||+-... ...+++.|.+
T Consensus 139 ~~~~-~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~ 195 (279)
T TIGR03590 139 PANC-RLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAE 195 (279)
T ss_pred cCCC-eEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhc
Confidence 2111 125676 88999876654322 21 234667777776654 2355555543
No 12
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=67.72 E-value=11 Score=38.43 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=43.3
Q ss_pred CCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCC
Q 011942 85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGR 135 (474)
Q Consensus 85 gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGR 135 (474)
-||++|.+=-++=.+++|.-.|..+|......|..|.++|-+|||+||=.-
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv 58 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAV 58 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcH
Confidence 389999998888666555467999999999999999999999999999443
No 13
>PRK06801 hypothetical protein; Provisional
Probab=65.77 E-value=1.1e+02 Score=31.64 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=87.4
Q ss_pred hHHHHHHHHCCCeEEEE--ecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 114 VPTIKHLIQNGAKVILS--SHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 114 lpTIk~L~~~gaKvVL~--SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
+.+|+..++.|..-|.+ ||+ | .++.+.+..-...+.+-.|.+|.-.-..+|. ..+++.+ ...
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l--~--~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg---------~e~~v~~-~~~-- 150 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTL--E--YEENVRQTREVVKMCHAVGVSVEAELGAVGG---------DEGGALY-GEA-- 150 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCC--C--HHHHHHHHHHHHHHHHHcCCeEEeecCcccC---------CCCCccc-CCc--
Confidence 56788899999997777 444 2 1122222222223334457766654444441 1122211 100
Q ss_pred ccccccCcHHHHHHHh--hcCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCC
Q 011942 192 YKEEEKNDPEFAKKLA--SLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGS 269 (474)
Q Consensus 192 ~~eE~~nd~~fak~LA--~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGa 269 (474)
......+|+-++... .-+|+.-- +||++|..+.. .|+ .+|-.-+|+.. .+ .-| +++.||+
T Consensus 151 -~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~---~~~------l~~e~l~~i~~---~~---~~P-LVlHGGS 212 (286)
T PRK06801 151 -DSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKG---EPK------LDFARLAAIHQ---QT---GLP-LVLHGGS 212 (286)
T ss_pred -ccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCC---CCC------CCHHHHHHHHH---hc---CCC-EEEECCC
Confidence 011234555444444 47787777 99999987753 222 23333334332 32 467 6889999
Q ss_pred cccchHHHHHHHHH-hcCeEEEchHHHHHHHHHc
Q 011942 270 KVSSKIGVIESLLE-TCDILLLGGGMIFTFYKAQ 302 (474)
Q Consensus 270 KvsdKI~vi~~Ll~-kvD~lliGG~ma~tFL~A~ 302 (474)
.+++-- ++.+++ -+++|=++-.+-..|..+.
T Consensus 213 gi~~e~--~~~~i~~Gi~KINv~T~~~~a~~~~~ 244 (286)
T PRK06801 213 GISDAD--FRRAIELGIHKINFYTGMSQAALAAV 244 (286)
T ss_pred CCCHHH--HHHHHHcCCcEEEehhHHHHHHHHHH
Confidence 999733 445554 4999999999999888774
No 14
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.17 E-value=20 Score=38.78 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=35.3
Q ss_pred hhhcCCCCCeEEEecCC-cccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 253 GAVSSPKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 253 ~~~~~p~rP~vaIlGGa-KvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
++++..+++.++|+||- |-.|+-.+.+.+.+++|.+++.|-.+..+...
T Consensus 381 ~al~~~~~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~ 430 (498)
T PRK02006 381 AALDGLAQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAA 430 (498)
T ss_pred HHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHH
Confidence 33333356899999996 55566667777777899999999776666554
No 15
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=63.67 E-value=36 Score=29.79 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=49.5
Q ss_pred ccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchh--hHHHhh---
Q 011942 381 DTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGG--ASLELL--- 455 (474)
Q Consensus 381 ~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGG--A~Le~L--- 455 (474)
.+.+.|.+... +. .+. .+.++++.+.+.. ..+.+|+||.+....-+..-....++||..|-| .+.+++
T Consensus 38 ~~pdiv~~S~~---~~--~~~-~~~~~~~~ik~~~-p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 38 LKPDVVGISLM---TS--AIY-EALELAKIAKEVL-PNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred cCCCEEEEeec---cc--cHH-HHHHHHHHHHHHC-CCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 58899988853 22 233 7888888887753 357888888887766565323457899998887 444444
Q ss_pred -cCCCC
Q 011942 456 -EGKEL 460 (474)
Q Consensus 456 -eGk~L 460 (474)
+|+.+
T Consensus 111 ~~g~~~ 116 (127)
T cd02068 111 EEGEDL 116 (127)
T ss_pred HcCCCc
Confidence 45555
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=62.68 E-value=95 Score=30.15 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=29.5
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f 162 (474)
+++.|.+.|+.-||+.|--|.... -.++...++..+ +|..+-+
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~---~e~~~~v~~a~~-~Gl~~I~ 119 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTL---ADIEAVVERAKK-LGLESVV 119 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCH---HHHHHHHHHHHH-CCCeEEE
Confidence 589999999999999998776322 125556666555 4664443
No 17
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.96 E-value=23 Score=30.00 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=24.8
Q ss_pred HHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEE
Q 011942 277 VIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (474)
Q Consensus 277 vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIi 334 (474)
-|++.++++|-||+ +.+--..+....+.+.|++++++++
T Consensus 41 ~l~~~i~~aD~VIv-------------------~t~~vsH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 41 RLPSKIKKADLVIV-------------------FTDYVSHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred HHHHhcCCCCEEEE-------------------EeCCcChHHHHHHHHHHHHcCCcEE
Confidence 37777777777766 2222335666667777888877654
No 18
>PRK06988 putative formyltransferase; Provisional
Probab=61.75 E-value=36 Score=35.13 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCC
Q 011942 112 AAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEG 181 (474)
Q Consensus 112 a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~G 181 (474)
-++|+++.|+++|.. +.+++|-.||.+ +....|+.++. +-.|.|+....+.-.++..+.++++++-
T Consensus 13 ~a~~~L~~L~~~~~~i~~Vvt~~d~~~~---~~~~~~v~~~A-~~~gip~~~~~~~~~~~~~~~l~~~~~D 79 (312)
T PRK06988 13 VGVRCLQVLLARGVDVALVVTHEDNPTE---NIWFGSVAAVA-AEHGIPVITPADPNDPELRAAVAAAAPD 79 (312)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCcc---CcCCCHHHHHH-HHcCCcEEccccCCCHHHHHHHHhcCCC
Confidence 478999999999988 457888888854 23334554444 4458887765555555555556655543
No 19
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.50 E-value=29 Score=36.69 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=35.9
Q ss_pred HHHHhhhcCCCCCeEEEecC-CcccchHHHHHHHHHhcCeEEEchHHHHHHH
Q 011942 249 DYLVGAVSSPKRPFAAIVGG-SKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (474)
Q Consensus 249 ~~L~~~~~~p~rP~vaIlGG-aKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (474)
+.+..+++.++++.++|+|| .|--|--.+++.+.+.+|.+++.|--+..+.
T Consensus 302 ~s~~~al~~~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G~~~~~i~ 353 (418)
T PRK00683 302 SAVEKALLAVGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEIA 353 (418)
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEECCCHHHHH
Confidence 34444554456789999998 6666665788888778999999886544443
No 20
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=59.78 E-value=46 Score=34.30 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=51.6
Q ss_pred hhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV-L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
++|+++.|+++|..|+ ++++-.+|.+...++...|+.++..+ .|.||...++.-.++..+.++++++-=+++.-.-++
T Consensus 12 a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~-~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i 90 (313)
T TIGR00460 12 SLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEE-KGIPVFQPEKQRQLEELPLVRELKPDVIVVVSFGKI 90 (313)
T ss_pred HHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHH-cCCCEEecCCCCcHHHHHHHHhhCCCEEEEccchhh
Confidence 6899999999998864 78888888764445555566555554 588886655544445555666666633333333344
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.+++
T Consensus 91 ip~~ 94 (313)
T TIGR00460 91 LPKE 94 (313)
T ss_pred CCHH
Confidence 4433
No 21
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=59.50 E-value=35 Score=35.60 Aligned_cols=76 Identities=37% Similarity=0.618 Sum_probs=52.4
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKv-VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
+.|+++.|+++|..| -+++|-.||.|...++...|+.+.- .-+|.||
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A-~~~~ipv------------------------------- 60 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLA-LELGIPV------------------------------- 60 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHH-HHcCCce-------------------------------
Confidence 678999999999885 4899999999865666666775433 3334443
Q ss_pred ccccccCcHHHHHHHhhc-CCEEeeccccc
Q 011942 192 YKEEEKNDPEFAKKLASL-ADLYVNDAFGT 220 (474)
Q Consensus 192 ~~eE~~nd~~fak~LA~l-~DiyVNDAFgt 220 (474)
|.-|.-+++++.+.++.+ +|+.|-=|||-
T Consensus 61 ~qP~~l~~~e~~~~l~~l~~D~ivvvayG~ 90 (307)
T COG0223 61 FQPEKLNDPEFLEELAALDPDLIVVVAYGQ 90 (307)
T ss_pred eccccCCcHHHHHHHhccCCCEEEEEehhh
Confidence 333444555666777664 68888777774
No 22
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=57.95 E-value=42 Score=34.87 Aligned_cols=191 Identities=23% Similarity=0.290 Sum_probs=108.3
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCC------CCCccCcchh--HhhhhHHHHHHHHCCCeEEEEecCCCCC--C----C
Q 011942 74 SVGELSGADLKGKKVFVRADLNVPLD------DNQNITDDTR--IRAAVPTIKHLIQNGAKVILSSHLGRPK--G----V 139 (474)
Q Consensus 74 si~~l~d~dl~gK~VlvRvD~NVPl~------~~g~I~Dd~R--I~a~lpTIk~L~~~gaKvVL~SHlGRPk--g----~ 139 (474)
.+.++++++ +|.+|++|.---.|-. .+-++.|.|- ....--+++...++|.++||+-|-|-|. | +
T Consensus 57 fve~l~e~p-~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~ 135 (294)
T COG0761 57 FVEELDEVP-DGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQY 135 (294)
T ss_pred eccccccCC-CCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeecccc
Confidence 456777777 8889999975544431 2236667664 3344457788889999999999999996 2 2
Q ss_pred CC-CCChhhhHHHHHHH---hCCceeeccCCC--CHHHHHHHhcCCCCcEEEEecccCcccc----------ccCcHHHH
Q 011942 140 TP-KFSLAPLVPRLSEL---LGIQVVKADDCI--GPEVEKLVASLPEGGVLLLENVRFYKEE----------EKNDPEFA 203 (474)
Q Consensus 140 ~~-~~SL~pva~~Ls~l---L~~~V~f~~d~i--g~~v~~~i~~l~~GeVlLLENlRF~~eE----------~~nd~~fa 203 (474)
.+ ...|-.-.+.+.++ +..++.|+.... =++..+.++.|+. ||-..| +.|..+=+
T Consensus 136 ~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~---------r~p~~~~~~~~~ICyAT~nRQ~Av 206 (294)
T COG0761 136 PEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKE---------RFPKIEVPPFNDICYATQNRQDAV 206 (294)
T ss_pred CCCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHH---------hCccccCCcccccchhhhhHHHHH
Confidence 22 34444444555555 333567765442 2345555555532 222111 34567889
Q ss_pred HHHhhcCCEEeecccccccccCcccc----ccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchH--HH
Q 011942 204 KKLASLADLYVNDAFGTAHRAHASTE----GVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKI--GV 277 (474)
Q Consensus 204 k~LA~l~DiyVNDAFgtaHR~haS~v----Gi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI--~v 277 (474)
+.||+-+|+++- -| -.|+|+. -+++- .+..-+|++.+=+.=...+. ..-.+.|-.||-..|.| .+
T Consensus 207 k~la~~~Dl~iV--VG---~~nSSNs~rL~eiA~~--~g~~aylId~~~ei~~~w~~--~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 207 KELAPEVDLVIV--VG---SKNSSNSNRLAEIAKR--HGKPAYLIDDAEEIDPEWLK--GVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HHHhhcCCEEEE--EC---CCCCccHHHHHHHHHH--hCCCeEEeCChHhCCHHHhc--CccEEEEecCCCCCHHHHHHH
Confidence 999999999873 11 2334442 11110 01112233322111122232 25568999999988887 55
Q ss_pred HHHHHH
Q 011942 278 IESLLE 283 (474)
Q Consensus 278 i~~Ll~ 283 (474)
|+.|-+
T Consensus 278 i~~l~~ 283 (294)
T COG0761 278 IAKLRE 283 (294)
T ss_pred HHHHHH
Confidence 555544
No 23
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=57.29 E-value=56 Score=33.48 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 011942 112 AAVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (474)
Q Consensus 112 a~lpTIk~L~~~gaKvV-L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlR 190 (474)
-++|+++.|+++|.+++ +++|-.+|.+...++...|+.++. +-.|.||.-..+.-.++..+.++++++-=+++.-.-+
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a-~~~~Ip~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 89 (309)
T PRK00005 11 FAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLA-LEHGIPVLQPEKLRDPEFLAELAALNADVIVVVAYGQ 89 (309)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHH-HHcCCCEECcCCCCCHHHHHHHHhcCcCEEEEehhhc
Confidence 46899999999888854 788887776543344444555444 4468887544444455666667776665455545555
Q ss_pred Ccccc
Q 011942 191 FYKEE 195 (474)
Q Consensus 191 F~~eE 195 (474)
+.+++
T Consensus 90 iip~~ 94 (309)
T PRK00005 90 ILPKA 94 (309)
T ss_pred ccCHH
Confidence 55544
No 24
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=57.25 E-value=40 Score=28.87 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=46.1
Q ss_pred cchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCC--CHHHHHHHhc-CCCCc
Q 011942 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI--GPEVEKLVAS-LPEGG 182 (474)
Q Consensus 106 Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~i--g~~v~~~i~~-l~~Ge 182 (474)
+++=|-.+...|++|.++|-+++++|--+ ..|-+.++++| +-+|.++.. ++++ +..+.+.++. .....
T Consensus 12 g~~~ipga~e~l~~L~~~g~~~~~lTNns-------~~s~~~~~~~L-~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~~~~ 82 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERGKPVVFLTNNS-------SRSREEYAKKL-KKLGIPVDE-DEIITSGMAAAEYLKEHKGGKK 82 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTTSEEEEEES-S-------SS-HHHHHHHH-HHTTTT--G-GGEEEHHHHHHHHHHHHTTSSE
T ss_pred CCCcCcCHHHHHHHHHHcCCCEEEEeCCC-------CCCHHHHHHHH-HhcCcCCCc-CEEEChHHHHHHHHHhcCCCCE
Confidence 35567788999999999999999998654 34667788888 448888766 5555 3344444554 33444
Q ss_pred EEEE
Q 011942 183 VLLL 186 (474)
Q Consensus 183 VlLL 186 (474)
|+++
T Consensus 83 v~vl 86 (101)
T PF13344_consen 83 VYVL 86 (101)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 25
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=53.45 E-value=67 Score=33.04 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCC
Q 011942 111 RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLP 179 (474)
Q Consensus 111 ~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~ 179 (474)
.+.++.|...+++|-+|+++|+.|-|.-.++.+ .+++++.+. |.+|..++-.-.-.+.-+...+.
T Consensus 71 ~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~---~Lv~~~~~~-gi~v~vIPGiSA~~aA~a~sG~~ 135 (287)
T PRK14994 71 QQKAETLLAKLQEGQNIALVSDAGTPLINDPGY---HLVRTCREA-GIRVVPLPGPCAAITALSAAGLP 135 (287)
T ss_pred HHHHHHHHHHHHCCCeEEEEccCCCCceeCCHH---HHHHHHHHC-CCCEEEeCCHHHHHHHHHHcCCC
Confidence 555678888888999999999999995343333 344455543 88898877654333333334444
No 26
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=49.10 E-value=1.8e+02 Score=28.96 Aligned_cols=38 Identities=16% Similarity=0.550 Sum_probs=30.3
Q ss_pred eCCCCCCCCcccccChhHHHHHHHH-----hccC------CeEEEeCcc
Q 011942 355 PATAIPDGWMGLDIGPDSVKTFNEA-----LDTT------KTVIWNGPM 392 (474)
Q Consensus 355 ~~~~Ip~~~~~lDIGp~Ti~~~~~~-----i~~a------ktI~WNGPm 392 (474)
....++.+|.|-.|..+.++.+.+. +.-| .|++++||+
T Consensus 143 ~a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~Pl 191 (223)
T TIGR00290 143 AAEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPI 191 (223)
T ss_pred ecCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCcc
Confidence 3456888999999999999998875 3333 599999996
No 27
>PRK05826 pyruvate kinase; Provisional
Probab=47.84 E-value=24 Score=38.70 Aligned_cols=300 Identities=18% Similarity=0.242 Sum_probs=158.8
Q ss_pred hhHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-----HhcCCCCcEEE
Q 011942 113 AVPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLL 185 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV--L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-----i~~l~~GeVlL 185 (474)
+..+|+.|++.|..+. =+||-.. +....+-...+.+++.+|++|...-|.-||+.+-- --.|+.||.+-
T Consensus 18 ~~e~l~~li~~G~~v~RiN~sHg~~----~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~~i~l~~G~~v~ 93 (465)
T PRK05826 18 SPENLEKLIEAGVNVVRLNFSHGSH----EEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKEGKITLKTGDKFT 93 (465)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccCCcEEecCCCEEE
Confidence 3579999999998864 5677542 22334444556677788999999889989876521 12367788777
Q ss_pred EecccCccccc----cCcHHHHHHHhhcCCEEeecccccccc-------cC---------ccccccccccCcc--chhhh
Q 011942 186 LENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHR-------AH---------ASTEGVTKYLKPS--VAGFL 243 (474)
Q Consensus 186 LENlRF~~eE~----~nd~~fak~LA~l~DiyVNDAFgtaHR-------~h---------aS~vGi~~~l~~s--~aG~L 243 (474)
|-+-+-..+++ -|.++|.+.+...-.||++|.-=...= .. .|--|+. +|.. -.-.|
T Consensus 94 l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn--lp~~~~~lp~l 171 (465)
T PRK05826 94 LDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN--IPGGGLSLPAL 171 (465)
T ss_pred EEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee--ccCcccCCCCC
Confidence 65432111111 135679999999999999995322210 00 0000111 0000 01113
Q ss_pred HHHHHHHHHhhhcCCCCCeEEE------------------ecC------CcccchHHH--HHHHHHhcCeEEEchHHHHH
Q 011942 244 LQKELDYLVGAVSSPKRPFAAI------------------VGG------SKVSSKIGV--IESLLETCDILLLGGGMIFT 297 (474)
Q Consensus 244 mekEl~~L~~~~~~p~rP~vaI------------------lGG------aKvsdKI~v--i~~Ll~kvD~lliGG~ma~t 297 (474)
=|++...+..+++..-. ++++ .|. +||.++-++ |+.++..+|.|++|=+
T Consensus 172 te~D~~~i~~ald~g~d-~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrg---- 246 (465)
T PRK05826 172 TEKDKADIKFAAEQGVD-YIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARG---- 246 (465)
T ss_pred ChhhHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcc----
Confidence 34555555444433211 1111 122 577776654 4444667999999643
Q ss_pred HHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccc--CCCCCeeEE-eC-CCCCCCCcccc------
Q 011942 298 FYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKF--APDANSKVV-PA-TAIPDGWMGLD------ 367 (474)
Q Consensus 298 FL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~--~~~~~~~~v-~~-~~Ip~~~~~lD------ 367 (474)
-.|.++| .++.-..-++|++.|+++|..++.-+... ++. .+--.|.++ ++ +.+-+| .|
T Consensus 247 ---DLg~elg----~~~v~~~qk~Ii~~c~~~gKpvi~ATqmL--eSM~~~p~PTRAEvsDVanav~dG---~D~vmLS~ 314 (465)
T PRK05826 247 ---DLGVEIP----DEEVPGLQKKIIRKAREAGKPVITATQML--ESMIENPRPTRAEVSDVANAVLDG---TDAVMLSG 314 (465)
T ss_pred ---hhhhhcC----cHhHHHHHHHHHHHHHHcCCCEEEECHHH--HHHhhCCCCchhhhhhHHHHHHcC---CcEEEecc
Confidence 2455666 34556677899999999998776543322 111 011111111 11 112222 23
Q ss_pred ---cCh---hHHHHHHHHhccCCeEEEeCcccc-cCccCchHHHHHHHHHHHhhcC-CC-c--EEEE-ecchHHHHHHHc
Q 011942 368 ---IGP---DSVKTFNEALDTTKTVIWNGPMGV-FEFDKFAVGTEAIAKKLADLSG-KG-V--TTII-GGGDSVAAVEKV 435 (474)
Q Consensus 368 ---IGp---~Ti~~~~~~i~~aktI~WNGPmGv-fE~~~Fa~GT~~i~~aia~~~~-~g-a--~sIv-GGGDt~aAv~~~ 435 (474)
+|. ++++...+++.++...+|. ..-. ...+.+...+.+++.+..+... -+ + ..+. -.|-|+..+.++
T Consensus 315 ETA~G~yPveaV~~m~~I~~~aE~~~~~-~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~ 393 (465)
T PRK05826 315 ETAAGKYPVEAVEAMARICKGAEKEFSI-NLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRF 393 (465)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHhccch-hhhhhhccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhh
Confidence 332 6777788888888766553 1000 0111223455666666554322 12 2 3222 266777777766
Q ss_pred C
Q 011942 436 G 436 (474)
Q Consensus 436 g 436 (474)
.
T Consensus 394 R 394 (465)
T PRK05826 394 R 394 (465)
T ss_pred C
Confidence 4
No 28
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=47.07 E-value=40 Score=31.35 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=32.5
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhh----hhHHHHHHHHCCCe-EEEEecC
Q 011942 74 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRA----AVPTIKHLIQNGAK-VILSSHL 133 (474)
Q Consensus 74 si~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a----~lpTIk~L~~~gaK-vVL~SHl 133 (474)
...|....|++||.|+|.-+ .|-+.++.-.-..+.++ .---.+++.++||+ ||++.+.
T Consensus 37 ~~dDYag~DVkGKIVlv~~g--~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 37 SWDDYAGLDVKGKVVVVLRN--DPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred ChhhcCCCCCCCcEEEEEcC--CCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 34566667999999999754 34221110000111111 12356789999999 6666554
No 29
>PRK08187 pyruvate kinase; Validated
Probab=46.22 E-value=15 Score=40.52 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=73.8
Q ss_pred chhHhhhhH--------HHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-H
Q 011942 107 DTRIRAAVP--------TIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V 175 (474)
Q Consensus 107 d~RI~a~lp--------TIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i 175 (474)
.+||..++| +|+.|+++|..| |=+||-+ | +....+-...+.+++.+|++|...-|.-||+++-- +
T Consensus 134 ~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~-~---e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRtG~l 209 (493)
T PRK08187 134 RTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDD-P---AAWQAMIGHLRQAERATGRRCKILMDLAGPKIRTGAV 209 (493)
T ss_pred CceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceeeccc
Confidence 355655553 899999999997 5678865 2 22234556667788889999999999999987631 2
Q ss_pred ------hcCCCCcEEEEecccCcc-cc-c-----cCcHHHHHHHhhcCCEEeecc
Q 011942 176 ------ASLPEGGVLLLENVRFYK-EE-E-----KNDPEFAKKLASLADLYVNDA 217 (474)
Q Consensus 176 ------~~l~~GeVlLLENlRF~~-eE-~-----~nd~~fak~LA~l~DiyVNDA 217 (474)
-.|+.||.+.|-.-+-.. .+ . -+-++|.+.+...--||++|.
T Consensus 210 ~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG 264 (493)
T PRK08187 210 AGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDG 264 (493)
T ss_pred CCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCC
Confidence 147888888774322111 10 1 134689999999999999985
No 30
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.04 E-value=74 Score=33.82 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=33.7
Q ss_pred CCCeEEEecC-CcccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 259 KRPFAAIVGG-SKVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 259 ~rP~vaIlGG-aKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
++|.++|+|| .|-.|.-.+++.+.+.+|.+++-|..+..+...
T Consensus 348 ~~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~~~~l~~~ 391 (459)
T PRK02705 348 PGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQR 391 (459)
T ss_pred CCCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCCHHHHHHH
Confidence 3578999998 667788888888878899999888877665443
No 31
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=45.84 E-value=25 Score=34.35 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.4
Q ss_pred CccCcch--hHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 102 QNITDDT--RIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 102 g~I~Dd~--RI~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
|.++++. .+......|+.|.++|.+++++| |||
T Consensus 8 GTll~~~~~~~~~~~~~i~~l~~~g~~~~~~T--gR~ 42 (256)
T TIGR01486 8 GTLLDPHGYDWGPAKEVLERLQELGIPVIPCT--SKT 42 (256)
T ss_pred CCCcCCCCcCchHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 6666665 46678899999999999999997 887
No 32
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=45.81 E-value=37 Score=31.51 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH---hCCceee
Q 011942 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL---LGIQVVK 162 (474)
Q Consensus 112 a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~l---L~~~V~f 162 (474)
...+.|++|.++|.+|||+|.|+--.......+++.+-+++..+ |+.|+.+
T Consensus 33 ~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~ 86 (159)
T PF08645_consen 33 GVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQV 86 (159)
T ss_dssp THHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEE
T ss_pred hHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEE
Confidence 47889999999999999999998543211345666666665555 4667654
No 33
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.24 E-value=69 Score=34.07 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=28.7
Q ss_pred CCCeEEEecCC-cccchHHHHHHHHHhcCeEEEchHHHHHHH
Q 011942 259 KRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (474)
Q Consensus 259 ~rP~vaIlGGa-KvsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (474)
.+|.++|+||- |-.|-=.+++.+.+.+|.+++-|--+..+.
T Consensus 342 ~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G~~~~~l~ 383 (445)
T PRK04308 342 QNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIR 383 (445)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEECCCHHHHH
Confidence 45799999987 665655566656667999988886544443
No 34
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=44.84 E-value=45 Score=30.79 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=31.2
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEe
Q 011942 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSS 131 (474)
Q Consensus 75 i~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~S 131 (474)
..|..+.|++||-||++- ..|-+..+. ..++....---++.+.++||+ ||+++
T Consensus 40 ~~Dy~~iDVkGKIVlv~~--g~p~~~~~~--~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 40 HDDYAGLDVKGKIVVVLS--GGPAGIPSE--EGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred HhhccCCCCCCeEEEEEc--CCCCccccc--cccccccHHHHHHHHHHCCCeEEEEEe
Confidence 446566799999999986 344321111 111111122357889999999 55554
No 35
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=44.70 E-value=50 Score=30.95 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=34.7
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCC-ccCcc---hhHhhhhHHHHHHHHCCCe-EEEEecCCC
Q 011942 75 VGELSGADLKGKKVFVRADLNVPLDDNQ-NITDD---TRIRAAVPTIKHLIQNGAK-VILSSHLGR 135 (474)
Q Consensus 75 i~~l~d~dl~gK~VlvRvD~NVPl~~~g-~I~Dd---~RI~a~lpTIk~L~~~gaK-vVL~SHlGR 135 (474)
..+....|++||-|||+-+ .|-+.++ .+... +|.-.--.-++...++||+ ||++.+...
T Consensus 38 ~~Dy~giDVkGKIVlv~~g--~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 38 YDDYAGLDVKGKIVLVLRH--EPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred hhhccCCCCCCeEEEEEcC--CcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3455556999999999644 3543221 11111 2222222357788999999 777776544
No 36
>PRK06247 pyruvate kinase; Provisional
Probab=44.44 E-value=23 Score=39.10 Aligned_cols=208 Identities=20% Similarity=0.273 Sum_probs=123.5
Q ss_pred hHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-H----hcCCCCcEEEE
Q 011942 114 VPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V----ASLPEGGVLLL 186 (474)
Q Consensus 114 lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i----~~l~~GeVlLL 186 (474)
..+|+.|+++|..| +=+||-... +...+-...+.+++.+|++|...-|.-||+++-- + -.|+.||.+.|
T Consensus 20 ~e~l~~li~aGm~v~RlN~SHg~~e----~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~~~i~l~~G~~~~l 95 (476)
T PRK06247 20 EDMIRKLVEAGADVFRLNFSHGDHD----DHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFADGKVQLANGQTFRL 95 (476)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCCCcEeccCCCEEEE
Confidence 46899999999887 457886532 2233445556777888999998889989887622 1 23777887766
Q ss_pred ecccCccccc---cCcHHHHHHHhhcCCEEeecccccccc--cC-c-------------cccccccccCcc--chhhhHH
Q 011942 187 ENVRFYKEEE---KNDPEFAKKLASLADLYVNDAFGTAHR--AH-A-------------STEGVTKYLKPS--VAGFLLQ 245 (474)
Q Consensus 187 ENlRF~~eE~---~nd~~fak~LA~l~DiyVNDAFgtaHR--~h-a-------------S~vGi~~~l~~s--~aG~Lme 245 (474)
---.+...++ -+.++|.+.+...--||++|.-=...= .. - |--|+. +|.. -.-.|=|
T Consensus 96 ~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn--~p~~~~~~p~lte 173 (476)
T PRK06247 96 DVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVS--LPGTVLSVSALTE 173 (476)
T ss_pred EecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCccc--cCCcccCCCCCCH
Confidence 4222211111 135678999988888999987422210 00 0 001111 1100 1122456
Q ss_pred HHHHHHHhhhcCCCCCeEEEe---------------cC-----CcccchHHH--HHHHHHhcCeEEEchHHHHHHHHHcC
Q 011942 246 KELDYLVGAVSSPKRPFAAIV---------------GG-----SKVSSKIGV--IESLLETCDILLLGGGMIFTFYKAQG 303 (474)
Q Consensus 246 kEl~~L~~~~~~p~rP~vaIl---------------GG-----aKvsdKI~v--i~~Ll~kvD~lliGG~ma~tFL~A~G 303 (474)
|.++.|.-++++. =-|+++- |. +|+.++-++ |+.++..+|.|++|=| -.|
T Consensus 174 kD~~di~f~~~~~-vD~ia~SFVr~a~Di~~~r~~l~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRG-------DLg 245 (476)
T PRK06247 174 KDRADLEFALELG-VDWVALSFVQRPEDVEEVRKIIGGRVPVMAKIEKPQAIDRLEAIVEASDAIMVARG-------DLG 245 (476)
T ss_pred HHHHHHHHHHHcC-CCEEEECCCCCHHHHHHHHHHhhhcCeEEEEECCHHHHHhHHHHHHHcCEEEEccc-------hhc
Confidence 6666665544432 2233321 22 566665443 5556777999999643 245
Q ss_pred CccCCcccccCchHHHHHHHHHHhhCCCeEEccceE
Q 011942 304 ISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDV 339 (474)
Q Consensus 304 ~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~ 339 (474)
.++|- ++....-+++++.|++.|+.++.-+-.
T Consensus 246 ve~g~----~~v~~~qk~ii~~~~~~gkpvI~ATQm 277 (476)
T PRK06247 246 VEVPL----EQVPLIQKRIIRAARRAGKPVVVATQM 277 (476)
T ss_pred cccCH----HHHHHHHHHHHHHHHHhCCCEEEECch
Confidence 56653 455668899999999999887665543
No 37
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=43.39 E-value=29 Score=33.82 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=26.5
Q ss_pred CccCc-chhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 102 QNITD-DTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 102 g~I~D-d~RI~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
|.+++ +..+.++..+|+.|.++|.+++++| |||
T Consensus 8 GTLl~~~~~~~~~~~ai~~l~~~G~~~vi~T--gR~ 41 (225)
T TIGR02461 8 GTLLPPGYEPGPAREALEELKDLGFPIVFVS--SKT 41 (225)
T ss_pred CCCcCCCCCchHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 55554 4456678999999999999999996 887
No 38
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=43.10 E-value=95 Score=33.54 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHH-cCCCCCceEEecchh-
Q 011942 372 SVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEK-VGVAGVMSHISTGGG- 449 (474)
Q Consensus 372 Ti~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~-~g~~d~~shiSTGGG- 449 (474)
+.+.+.+...+.+.|.++.= ... .....++++.+-+.. .++.+|+||.|....-+. +.....+++|-.|-|
T Consensus 58 ~~~~~~~~~~~~Dlv~is~~-----t~~-~~~~~~ia~~iK~~~-p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE 130 (472)
T TIGR03471 58 TIDDTLAIAKDYDLVVLHTS-----TPS-FPSDVKTAEALKEQN-PATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD 130 (472)
T ss_pred CHHHHHHHhcCCCEEEEECC-----Ccc-hHHHHHHHHHHHHhC-CCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH
Confidence 33445556778899988742 222 245777888876652 367899999995544443 222346889999886
Q ss_pred -hHHHhhcCCCCchh
Q 011942 450 -ASLELLEGKELPGV 463 (474)
Q Consensus 450 -A~Le~LeGk~LPgv 463 (474)
.+.++++|+.++.|
T Consensus 131 ~~l~~l~~g~~~~~i 145 (472)
T TIGR03471 131 YTIKEVAEGKPLAEI 145 (472)
T ss_pred HHHHHHHcCCChhcC
Confidence 67788888765433
No 39
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=42.77 E-value=43 Score=27.47 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=37.8
Q ss_pred hHhhhhHHHHHHHHC-CCeEEEEecCCCCCCC-CCCCChhhhHHHHHHHhCCceeeccCCCC
Q 011942 109 RIRAAVPTIKHLIQN-GAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIG 168 (474)
Q Consensus 109 RI~a~lpTIk~L~~~-gaKvVL~SHlGRPkg~-~~~~SL~pva~~Ls~lL~~~V~f~~d~ig 168 (474)
+....+..|+.++++ ....|.++=-|...|. ...+. .++.+.|++.++.||.+.+|...
T Consensus 35 ~~~~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~nDa~s 95 (99)
T smart00732 35 NKEADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE-EAFAELLKERFNLPVVLVDERLA 95 (99)
T ss_pred CcchHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEeCCcc
Confidence 344556777777765 3444555543333331 12234 88999999999999999998753
No 40
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=42.50 E-value=1.1e+02 Score=34.66 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=55.7
Q ss_pred hhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV-L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
++|+++.|+++|..|+ +++|-.||.+. ....|+. .+.+-.|.||.-..+.-.++..+.++++++-=+++.---++
T Consensus 12 a~~~l~~L~~~~~~i~~V~t~pd~~~~~---~~~~~v~-~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~i 87 (660)
T PRK08125 12 GCVGIEALLAAGYEIAAVFTHTDNPGEN---HFFGSVA-RLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFYYRNL 87 (660)
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCCcCC---CCcCHHH-HHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEcccccc
Confidence 6899999999998877 89998888652 2222543 35566789987666665677777788887755555555566
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.++|
T Consensus 88 i~~~ 91 (660)
T PRK08125 88 LSDE 91 (660)
T ss_pred CCHH
Confidence 6655
No 41
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=42.16 E-value=41 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 110 IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
.....++|++|.++|.++.|+|...|.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~ 55 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGI 55 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcc
Confidence 456678999999999999999988765
No 42
>PLN02461 Probable pyruvate kinase
Probab=41.66 E-value=37 Score=37.83 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=67.1
Q ss_pred hhHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-Hh-----cCCCCcEE
Q 011942 113 AVPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-VA-----SLPEGGVL 184 (474)
Q Consensus 113 ~lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i~-----~l~~GeVl 184 (474)
+..+|+.|+++|..| +=+||-.. +.-...-...+..++-+|++|...-|.-||+++-- ++ .|+.||.+
T Consensus 35 ~~e~l~~li~aGm~v~RlN~SHg~~----e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~~~~~~~i~l~~G~~v 110 (511)
T PLN02461 35 SVPMLEKLLRAGMNVARFNFSHGSH----EYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGFLKDGKPVQLKQGQEI 110 (511)
T ss_pred CHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccccCCCCceecCCCCEE
Confidence 457999999999987 45788432 11122333445666778999999999999988732 22 26778877
Q ss_pred EEecccCccccc----cCcHHHHHHHhhcCCEEeeccc
Q 011942 185 LLENVRFYKEEE----KNDPEFAKKLASLADLYVNDAF 218 (474)
Q Consensus 185 LLENlRF~~eE~----~nd~~fak~LA~l~DiyVNDAF 218 (474)
.|-.=.-+.+++ -+.++|.+.+...--||++|..
T Consensus 111 ~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~ 148 (511)
T PLN02461 111 TITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGT 148 (511)
T ss_pred EEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCE
Confidence 773210011111 1357899999999999999864
No 43
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.42 E-value=1.7e+02 Score=31.12 Aligned_cols=43 Identities=19% Similarity=-0.025 Sum_probs=26.7
Q ss_pred CCCCeEEEecCC-cccchHHHHHHHHHhcCeEEEchHHHHHHHH
Q 011942 258 PKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (474)
Q Consensus 258 p~rP~vaIlGGa-KvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (474)
+.+|.++|+||. |-.|--.+.+.+.++.+.+++-|-.+..+..
T Consensus 337 ~~~~~i~IlGg~~~~~~~~~l~~~~~~~~~~vi~~G~~~~~~~~ 380 (438)
T PRK04663 337 IEGKLYLLVGGVGKGADFSPLKPVLATLNLQLCCFGEDGDQFMP 380 (438)
T ss_pred cCCcEEEEECCccCCCCHHHHHHHHHhhCcEEEEECCCHHHHHH
Confidence 346799999997 4444333333333345588888877655544
No 44
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.17 E-value=3.1e+02 Score=25.56 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=84.6
Q ss_pred HHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCC
Q 011942 281 LLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIP 360 (474)
Q Consensus 281 Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip 360 (474)
+++.+|.++.-|.--....+..|.++.. .-...++..++++.+.+++.+| |++..+ |
T Consensus 2 ~~~~adlv~~DG~~i~~~~~~~g~~~~~---rv~g~dl~~~l~~~~~~~~~~i-----fllG~~---------------~ 58 (172)
T PF03808_consen 2 ALNSADLVLPDGMPIVWAARLLGRPLPE---RVTGSDLFPDLLRRAEQRGKRI-----FLLGGS---------------E 58 (172)
T ss_pred hHHhCCEEecCCHHHHHHHHHcCCCCCc---ccCHHHHHHHHHHHHHHcCCeE-----EEEeCC---------------H
Confidence 5678999999998888888877877642 2245788899999998888877 455321 0
Q ss_pred CCCcccccChhHHHHHHHHhccCCeE-EEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchH----HHHHHHc
Q 011942 361 DGWMGLDIGPDSVKTFNEALDTTKTV-IWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS----VAAVEKV 435 (474)
Q Consensus 361 ~~~~~lDIGp~Ti~~~~~~i~~aktI-~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt----~aAv~~~ 435 (474)
++..+..+.+++.-.+-+.+ ..+||+.-. --.++.+.|.++.. .+.++|=|-- ..+-.+
T Consensus 59 ------~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-------~~~~i~~~I~~~~p--div~vglG~PkQE~~~~~~~- 122 (172)
T PF03808_consen 59 ------EVLEKAAANLRRRYPGLRIVGYHHGYFDEE-------EEEAIINRINASGP--DIVFVGLGAPKQERWIARHR- 122 (172)
T ss_pred ------HHHHHHHHHHHHHCCCeEEEEecCCCCChh-------hHHHHHHHHHHcCC--CEEEEECCCCHHHHHHHHHH-
Confidence 12224445555555555555 466776221 23667777776532 3666665532 222111
Q ss_pred CCCCCceE-EecchhhHHHhhcCC
Q 011942 436 GVAGVMSH-ISTGGGASLELLEGK 458 (474)
Q Consensus 436 g~~d~~sh-iSTGGGA~Le~LeGk 458 (474)
+.... +.-|-|+++.|++|+
T Consensus 123 ---~~l~~~v~i~vG~~~d~~aG~ 143 (172)
T PF03808_consen 123 ---QRLPAGVIIGVGGAFDFLAGK 143 (172)
T ss_pred ---HHCCCCEEEEECchhhhhccC
Confidence 12222 777889999999997
No 45
>PRK05337 beta-hexosaminidase; Provisional
Probab=39.71 E-value=1.1e+02 Score=31.99 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=57.8
Q ss_pred EEeccCCCCCCCCccCcchhH-hhhhHHHHHHHHCCCeEEEEecCCCCC-CCC-CCCChhhhHHHHHHHhCCceeeccCC
Q 011942 90 VRADLNVPLDDNQNITDDTRI-RAAVPTIKHLIQNGAKVILSSHLGRPK-GVT-PKFSLAPLVPRLSELLGIQVVKADDC 166 (474)
Q Consensus 90 vRvD~NVPl~~~g~I~Dd~RI-~a~lpTIk~L~~~gaKvVL~SHlGRPk-g~~-~~~SL~pva~~Ls~lL~~~V~f~~d~ 166 (474)
.+-+++.|+++. +...+ +..++--+.++++|+.-|+++|.--|. +.. -.+|=.-+-+.|.+-+|.+=..+.|+
T Consensus 175 ~dsh~~~~~~~~----~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~ 250 (337)
T PRK05337 175 ADSHVETPVDER----PLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDD 250 (337)
T ss_pred CCCCCCCCCCCC----CHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecc
Confidence 344566665421 12233 346888888999999999999988886 222 22444445568888888775555666
Q ss_pred CC--------HHHHHHHhcCCCC-cEEEEecc
Q 011942 167 IG--------PEVEKLVASLPEG-GVLLLENV 189 (474)
Q Consensus 167 ig--------~~v~~~i~~l~~G-eVlLLENl 189 (474)
.+ ...+..++.++.| |++|+-|-
T Consensus 251 l~m~a~~~~~~~~~~~~~al~AG~Dl~l~~~~ 282 (337)
T PRK05337 251 LSMEGAAVAGDYAERAQAALDAGCDMVLVCNN 282 (337)
T ss_pred hhhhhhhhcCCHHHHHHHHHHcCCCEEeeCCC
Confidence 52 2223334555555 66666544
No 46
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=39.54 E-value=77 Score=32.45 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=55.1
Q ss_pred cCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCC-CHHHHHHHhcCCC-C
Q 011942 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI-GPEVEKLVASLPE-G 181 (474)
Q Consensus 104 I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~i-g~~v~~~i~~l~~-G 181 (474)
+.+.+.|-.+..+|+.|.++|-++++++--+++ |=+-++++|+++.+.++..-.=+. |......++...+ +
T Consensus 20 ~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~-------s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~ 92 (269)
T COG0647 20 YRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTR-------SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGK 92 (269)
T ss_pred EeCCccCchHHHHHHHHHHcCCeEEEEeCCCCC-------CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCC
Confidence 345678899999999999999999999977654 445689999999998888743333 4444555665444 4
Q ss_pred cEEEE
Q 011942 182 GVLLL 186 (474)
Q Consensus 182 eVlLL 186 (474)
.|.++
T Consensus 93 kv~vi 97 (269)
T COG0647 93 KVYVI 97 (269)
T ss_pred EEEEE
Confidence 55555
No 47
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=38.32 E-value=85 Score=33.93 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=50.1
Q ss_pred hhhHH-HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 011942 112 AAVPT-IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (474)
Q Consensus 112 a~lpT-Ik~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlR 190 (474)
+++-| +-.+++.|-+||+.... .-...-+.+.+-+.+|.+|.|+++-.+++..+++.. ++-.+++||---
T Consensus 89 aAI~~~~l~ll~~GD~vl~~~~~--------YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPs 159 (396)
T COG0626 89 AAISTALLALLKAGDHVLLPDDL--------YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPS 159 (396)
T ss_pred HHHHHHHHHhcCCCCEEEecCCc--------cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCC
Confidence 44444 77888889888776552 223445666666669999999999888787776665 567899998654
No 48
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=38.13 E-value=4.1e+02 Score=26.66 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=37.0
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHh--CCceeeccCCCCHHHH
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELL--GIQVVKADDCIGPEVE 172 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL--~~~V~f~~d~ig~~v~ 172 (474)
+-+.|.+-|++-||+-|--|.+-. .-+-+-+++.+...+ |..+.+ |+|+..+
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f--~Et~~~i~~Kv~~a~~~gl~pIv---CiGE~~~ 129 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYF--GETDEDVAKKVKAALEAGLTPIL---CVGETLE 129 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcC--CCCcHHHHHHHHHHHHCCCEEEE---EeCCCHH
Confidence 567788889999999999998632 235667777777777 443333 7776554
No 49
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=36.75 E-value=57 Score=34.14 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=39.8
Q ss_pred ChhhhHHHHHHHhC-----CceeeccCCCCHHHHHHHhcC----CCCcEEEEecccCccccccCcHHHHHHHhh
Q 011942 144 SLAPLVPRLSELLG-----IQVVKADDCIGPEVEKLVASL----PEGGVLLLENVRFYKEEEKNDPEFAKKLAS 208 (474)
Q Consensus 144 SL~pva~~Ls~lL~-----~~V~f~~d~ig~~v~~~i~~l----~~GeVlLLENlRF~~eE~~nd~~fak~LA~ 208 (474)
+++...++..+.+. ++|..--+. =+++.++++.+ ..-|++||+|.|+-+||.+.+++-.++..+
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~ 257 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVE 257 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHH
Confidence 66777777777433 234332232 23555555411 134999999999999998888775555443
No 50
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=36.73 E-value=97 Score=29.23 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=35.7
Q ss_pred ccccCccCCCCCCCeEEEEeccCCCCCCCC--ccCc---chhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQ--NITD---DTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 73 ~si~~l~d~dl~gK~VlvRvD~NVPl~~~g--~I~D---d~RI~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
....|..++|++||.|++- .|-|-..++ .... -++--+----.+++.++||+=||+=|.-.+
T Consensus 38 ~~~dDy~g~DVkGKiVvvl--~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~~ 104 (157)
T cd04821 38 YGWDDYKGLDVKGKTVVIL--VNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETEP 104 (157)
T ss_pred cCcccccCCCcCCcEEEEE--cCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 3456777789999999875 345632211 0011 111112223567899999996666665433
No 51
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=36.21 E-value=1.7e+02 Score=28.24 Aligned_cols=116 Identities=16% Similarity=0.279 Sum_probs=71.4
Q ss_pred CCCeEEEecCCcccchHHHHHHHHH----hcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEE
Q 011942 259 KRPFAAIVGGSKVSSKIGVIESLLE----TCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (474)
Q Consensus 259 ~rP~vaIlGGaKvsdKI~vi~~Ll~----kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIi 334 (474)
..+++.|.||.++.|.+.=+..-.. .+|.+=+-...-|-+|.+ +...... ......+... .+...+.|+
T Consensus 24 ~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~---~~~~~~~-~~~~~~~~~~---~~~g~ipV~ 96 (203)
T cd04240 24 GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLA---DLEPRLV-ARTLAELTDV---LERGKIAIL 96 (203)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh---ccCCccc-cCCHHHHHHH---HHCCCcEEE
Confidence 6799999999999988866653221 367665555555555543 1222222 2223344443 344567788
Q ss_pred ccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCC-eEEEeCcccccCc
Q 011942 335 LPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTK-TVIWNGPMGVFEF 397 (474)
Q Consensus 335 lPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~ak-tI~WNGPmGvfE~ 397 (474)
.|..+..+ .++++.+| ++-.+|+..+-...-+|+ .|+..-.-|+|..
T Consensus 97 ~P~~~~~~-------------~~~~~~~~---~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~ 144 (203)
T cd04240 97 LPYRLLLD-------------TDPLPHSW---EVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEK 144 (203)
T ss_pred eCchhhcc-------------cCCCCccc---ccCHHHHHHHHHHHcCCCEEEEEeCCccccCC
Confidence 88876542 23456666 777788777555444555 7777888999974
No 52
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=35.84 E-value=1.8e+02 Score=25.74 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=38.5
Q ss_pred eEEEecCCccc--------chHHHHHHHHH--hcCeEEEchH-----------HHHHHHHHcCCccCCcccccCc---hH
Q 011942 262 FAAIVGGSKVS--------SKIGVIESLLE--TCDILLLGGG-----------MIFTFYKAQGISVGSSLVEEDK---LD 317 (474)
Q Consensus 262 ~vaIlGGaKvs--------dKI~vi~~Ll~--kvD~lliGG~-----------ma~tFL~A~G~~iG~SlvE~~~---~~ 317 (474)
.+.|+||..-. ..+.---.|.+ .+..|++.|+ +...++..+|++-..-++|+.. .+
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~e 81 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYE 81 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHH
Confidence 45677776654 23333333333 2667777666 3345555667654444566654 55
Q ss_pred HHHHHHHHHhhCCC
Q 011942 318 LATTLLAKAKAKGV 331 (474)
Q Consensus 318 ~a~~il~~a~~~g~ 331 (474)
.|....+.+++++.
T Consensus 82 na~~~~~~~~~~~~ 95 (150)
T cd06259 82 NARFSAELLRERGI 95 (150)
T ss_pred HHHHHHHHHHhcCC
Confidence 55555566666654
No 53
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.79 E-value=1.4e+02 Score=31.72 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=30.6
Q ss_pred CCCeEEEecC-CcccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 259 KRPFAAIVGG-SKVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 259 ~rP~vaIlGG-aKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
+++.++|+|| .|=.|--.+.+.+.+.+|.+++-|.-+..+...
T Consensus 344 ~~~iilI~Gg~~k~~d~~~l~~~l~~~~~~vil~G~~~~~i~~~ 387 (448)
T PRK03803 344 QGKLVLIAGGDGKGADFSPLREPVAKYVRAVVLIGRDADKIAAA 387 (448)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 4678999999 465555566666667799999988766555543
No 54
>PLN02762 pyruvate kinase complex alpha subunit
Probab=35.73 E-value=38 Score=37.71 Aligned_cols=309 Identities=16% Similarity=0.174 Sum_probs=157.7
Q ss_pred hHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-H-----hcCCCCcEEE
Q 011942 114 VPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V-----ASLPEGGVLL 185 (474)
Q Consensus 114 lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i-----~~l~~GeVlL 185 (474)
..+|+.|++.|..| +=+||-.. ++....-...+.+++.+|++|...-|.-||+.+-- + -.|++||.+.
T Consensus 40 ~e~l~~li~aGm~v~RlNfSHg~~----e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~~i~l~~G~~v~ 115 (509)
T PLN02762 40 FEQLEALAMGGMNVARLNMCHGTR----EWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWT 115 (509)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCCccEEecCCCEEE
Confidence 46899999999987 45787552 22234445556777888999999999999887621 1 1367888877
Q ss_pred EecccCcccc---c---cCcHHHHHHHhhcCCEEeecccccccc---cCc-------------cccccccc----cCcc-
Q 011942 186 LENVRFYKEE---E---KNDPEFAKKLASLADLYVNDAFGTAHR---AHA-------------STEGVTKY----LKPS- 238 (474)
Q Consensus 186 LENlRF~~eE---~---~nd~~fak~LA~l~DiyVNDAFgtaHR---~ha-------------S~vGi~~~----l~~s- 238 (474)
|-.-.+ .++ + -+-++|.+.+.+--.||++|..=...= ... |--|+.-+ ..|.
T Consensus 116 lt~~~~-~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~KgvNl~~~g~~~p~~ 194 (509)
T PLN02762 116 FTVRKF-DGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANLTFWRDGSLVRER 194 (509)
T ss_pred EeCCcc-CCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCceeeccccCCCCCC
Confidence 753221 121 1 134679999999999999987433210 000 00111100 0010
Q ss_pred --chhhhHHHHHHHHHhhhcCCCCCeEEE------------------ecC-------CcccchHHH--HHHHHHhcCeEE
Q 011942 239 --VAGFLLQKELDYLVGAVSSPKRPFAAI------------------VGG-------SKVSSKIGV--IESLLETCDILL 289 (474)
Q Consensus 239 --~aG~LmekEl~~L~~~~~~p~rP~vaI------------------lGG-------aKvsdKI~v--i~~Ll~kvD~ll 289 (474)
-.-.|=||..+.|.-.+++. =-|+|. -|+ +||..+-++ |+.+++.+|.|+
T Consensus 195 ~~~lp~ltekD~~di~f~~~~~-vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiM 273 (509)
T PLN02762 195 NAMLPTISSKDWLDIDFGISEG-VDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAM 273 (509)
T ss_pred ccCCCCCCHHHHHHHHHHHHcC-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEE
Confidence 11234566666554433322 223332 121 566555443 455577799999
Q ss_pred EchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccC--CCCCeeEEe--CCCCCCCCcc
Q 011942 290 LGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFA--PDANSKVVP--ATAIPDGWMG 365 (474)
Q Consensus 290 iGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~--~~~~~~~v~--~~~Ip~~~~~ 365 (474)
+ |+| ++|-.+=-++.-..=|+|+.+|++.|..++.-+-.. +... +--.|-+++ .+.|-+|.-.
T Consensus 274 V----------ARG-DLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmL--eSMi~np~PTRAEvsDVaNAVlDGtDa 340 (509)
T PLN02762 274 V----------ARG-DLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLL--ESMIEYPTPTRAEVADVSEAVRQRADA 340 (509)
T ss_pred E----------ecC-ccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchH--HhhhhCCCCCchhHHHHHHHHHhCCCE
Confidence 8 543 333222123334556889999999988776544322 1110 111111111 0112222211
Q ss_pred cc------cC---hhHHHHHHHHhccCCeE-EEeCcccccCccCchH-----HHHHHHHHHHhhcC-CCc---EEEEecc
Q 011942 366 LD------IG---PDSVKTFNEALDTTKTV-IWNGPMGVFEFDKFAV-----GTEAIAKKLADLSG-KGV---TTIIGGG 426 (474)
Q Consensus 366 lD------IG---p~Ti~~~~~~i~~aktI-~WNGPmGvfE~~~Fa~-----GT~~i~~aia~~~~-~ga---~sIvGGG 426 (474)
+= +| -++++...+++.++..- .|.-+.-.|+.+.+.. =+.+++.+..+... -++ .+.--.|
T Consensus 341 vMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG 420 (509)
T PLN02762 341 LMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHG 420 (509)
T ss_pred EEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCc
Confidence 00 22 26777788888777753 2211111122112211 12455555443221 122 2333578
Q ss_pred hHHHHHHHcCCCCCc
Q 011942 427 DSVAAVEKVGVAGVM 441 (474)
Q Consensus 427 Dt~aAv~~~g~~d~~ 441 (474)
.|+..+.++--.-.+
T Consensus 421 ~tA~~iSk~RP~~pI 435 (509)
T PLN02762 421 HMASLLSRNRPDCPI 435 (509)
T ss_pred HHHHHHHhhCCCCCE
Confidence 888888887544333
No 55
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=34.77 E-value=81 Score=31.75 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=37.6
Q ss_pred CeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecC
Q 011942 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHL 133 (474)
Q Consensus 86 K~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHl 133 (474)
|++++.+=-++=-+++|. .|..||++....|..+.++|-+|||+||=
T Consensus 10 ~~iViK~Ggs~l~~~~~~-~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 10 KRIVIKVGSSTLSYENGK-INLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred CEEEEEeCCCeeeCCCCC-cCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 567777666665554443 58899999999999999999999999995
No 56
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=34.53 E-value=61 Score=34.37 Aligned_cols=80 Identities=29% Similarity=0.457 Sum_probs=51.2
Q ss_pred CCCCCeEEEEeccCC-----CCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCC--CCCCChhhhHHHHHH
Q 011942 82 DLKGKKVFVRADLNV-----PLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV--TPKFSLAPLVPRLSE 154 (474)
Q Consensus 82 dl~gK~VlvRvD~NV-----Pl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~--~~~~SL~pva~~Ls~ 154 (474)
-++|+.+===.||++ |+..+|+| | .+|++.-+...-|+|. ..|-+|+ .+.++++.+++.+.-
T Consensus 126 G~rg~~~gSL~dfgi~Y~~v~Lt~~gki-D-------~~~v~~~i~~~tkli~---IQRS~GY~~RpS~~I~eI~~~i~~ 194 (416)
T COG4100 126 GLRGEGQGSLKDFGIKYKAVPLTADGKI-D-------IQAVKTAISDRTKLIG---IQRSKGYAWRPSLSIAEIEEMITF 194 (416)
T ss_pred ccCCCCcccHHHhCcceeecccccCCcc-c-------HHHHHHhcCccceEEE---EEeccCcCCCCcccHHHHHHHHHH
Confidence 345544433346665 77666776 3 4566666667788764 4677774 356777777665544
Q ss_pred Hh---CCceeeccCCCCHHHH
Q 011942 155 LL---GIQVVKADDCIGPEVE 172 (474)
Q Consensus 155 lL---~~~V~f~~d~ig~~v~ 172 (474)
+- ..-+.|+|+|.|+=++
T Consensus 195 vk~inpn~ivFVDNCYGEFvE 215 (416)
T COG4100 195 VKEINPNVIVFVDNCYGEFVE 215 (416)
T ss_pred HHhcCCCEEEEEeccchhhhh
Confidence 43 3458999999997665
No 57
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.34 E-value=1.7e+02 Score=24.73 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=40.9
Q ss_pred cCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHH-cCCCCCceEEecchh--hHHHh
Q 011942 382 TTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEK-VGVAGVMSHISTGGG--ASLEL 454 (474)
Q Consensus 382 ~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~-~g~~d~~shiSTGGG--A~Le~ 454 (474)
+.+.|.+..++.- -.....++++.+.+. ..+...|+||.+....-+. +.....++|+-.|-| ++.++
T Consensus 51 ~pd~V~iS~~~~~-----~~~~~~~l~~~~k~~-~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE~~~~~l 120 (121)
T PF02310_consen 51 RPDVVGISVSMTP-----NLPEAKRLARAIKER-NPNIPIVVGGPHATADPEEILREYPGIDYVVRGEGEEAFPEL 120 (121)
T ss_dssp TCSEEEEEESSST-----HHHHHHHHHHHHHTT-CTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTSSHHHH-
T ss_pred CCcEEEEEccCcC-----cHHHHHHHHHHHHhc-CCCCEEEEECCchhcChHHHhccCcCcceecCCChHHhhccc
Confidence 6799999876432 345567788875443 3467899999883322222 110156889888877 44444
No 58
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=33.94 E-value=54 Score=36.03 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=114.3
Q ss_pred hHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-H----hcCCCCcEEEE
Q 011942 114 VPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V----ASLPEGGVLLL 186 (474)
Q Consensus 114 lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i----~~l~~GeVlLL 186 (474)
..+|+.|++.|..+ +=+||-. .++...+-...+.+++.+|+++...-|.-||+.+-- + -.|+.||.+.|
T Consensus 16 ~e~l~~l~~~G~~~~R~N~shg~----~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~~~~~l~~g~~v~l 91 (473)
T TIGR01064 16 PEMLKKLLDAGMNVARLNFSHGS----HEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKGGPVKLKKGDKVII 91 (473)
T ss_pred HHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCCCceecCCCCEEEE
Confidence 35889999999886 4567755 223344555566777778888888888888877521 1 23677887766
Q ss_pred ecccCc-cccc----cCcHHHHHHHhhcCCEEeecccccccc--cC-----c---------cccccccccCcc--chhhh
Q 011942 187 ENVRFY-KEEE----KNDPEFAKKLASLADLYVNDAFGTAHR--AH-----A---------STEGVTKYLKPS--VAGFL 243 (474)
Q Consensus 187 ENlRF~-~eE~----~nd~~fak~LA~l~DiyVNDAFgtaHR--~h-----a---------S~vGi~~~l~~s--~aG~L 243 (474)
-.-..+ .+++ -+.++|.+.+...--||++|..=...= .+ + |--|+. ++.. -.-.|
T Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn--~p~~~~~~~~l 169 (473)
T TIGR01064 92 TTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVN--LPGADVDLPAL 169 (473)
T ss_pred ecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceee--cCCCccCCCCC
Confidence 322111 0111 135678888888888999986432210 00 0 001111 1000 11223
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEe------------------c------CCcccchHHHHHHH---HHhcCeEEEchHHHH
Q 011942 244 LQKELDYLVGAVSSPKRPFAAIV------------------G------GSKVSSKIGVIESL---LETCDILLLGGGMIF 296 (474)
Q Consensus 244 mekEl~~L~~~~~~p~rP~vaIl------------------G------GaKvsdKI~vi~~L---l~kvD~lliGG~ma~ 296 (474)
=||+.+-|.-++...-. ++++- + -+||.++-++ +|+ +.-+|.|++|.+
T Consensus 170 tekD~~Dl~~~~~~~~d-~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av-~nl~eI~~~~dgi~iG~g--- 244 (473)
T TIGR01064 170 SEKDKKDLKFGVEQGVD-MVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGV-DNIDEIAEASDGIMVARG--- 244 (473)
T ss_pred CHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHH-HhHHHHHhhCCcEEEchH---
Confidence 45665555544433211 11110 0 0355444433 344 334588888776
Q ss_pred HHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccc
Q 011942 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPS 337 (474)
Q Consensus 297 tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPv 337 (474)
-.+.++| .++....-++++..|++.|+..+...
T Consensus 245 ----DL~~~lg----~~~l~~~~~~ii~aaraag~pvi~at 277 (473)
T TIGR01064 245 ----DLGVEIP----AEEVPIAQKKMIRKCNRAGKPVITAT 277 (473)
T ss_pred ----HHHhhcC----cHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3455555 24556677888999999999876655
No 59
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=33.82 E-value=74 Score=34.13 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=44.9
Q ss_pred CCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEe---------cCCCCCC
Q 011942 85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS---------HLGRPKG 138 (474)
Q Consensus 85 gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~S---------HlGRPkg 138 (474)
-||+.|.+=-++=.+.+|. +|-.+|.....+|..|.++|.+|||+| |||.|+.
T Consensus 6 ~~riVvKiGSs~Lt~~~g~-l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~r 67 (369)
T COG0263 6 ARRIVVKIGSSSLTDGTGG-LDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKR 67 (369)
T ss_pred ceEEEEEECcceeeCCCCC-cCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCC
Confidence 3899999999887776554 699999999999999999999999987 4776654
No 60
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=33.70 E-value=69 Score=36.93 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEec----CCCCC
Q 011942 85 GKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH----LGRPK 137 (474)
Q Consensus 85 gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SH----lGRPk 137 (474)
-|+++|.+=-++=.+++|. .|..+|......|..|.++|.+|||+|| .|++.
T Consensus 7 ~~~iViKiGss~lt~~~~~-~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~ 62 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGR-LALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQR 62 (715)
T ss_pred CCEEEEEeCcceeECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHH
Confidence 4889999888776565454 6888999999999999999999999999 55553
No 61
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=33.37 E-value=1.3e+02 Score=29.34 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=48.5
Q ss_pred CccCcc-hhHhhhhHHHHHHHHCCCeEEEEecCC-CCCCCCCCCChhhhHHHHHHHhCCceeeccCCC--CHHHHHHHhc
Q 011942 102 QNITDD-TRIRAAVPTIKHLIQNGAKVILSSHLG-RPKGVTPKFSLAPLVPRLSELLGIQVVKADDCI--GPEVEKLVAS 177 (474)
Q Consensus 102 g~I~Dd-~RI~a~lpTIk~L~~~gaKvVL~SHlG-RPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~i--g~~v~~~i~~ 177 (474)
|.+.|. .-|..+..+|+.|.++|-+++++|.-+ | |-+.++++|.+++|.++.. ++++ +..+...+++
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~--------~~~~~~~~l~~~~g~~~~~-~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSR--------SEEDYAEKLSSLLGVDVSP-DQIITSGSVTKDLLRQ 77 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCC--------CHHHHHHHHHHhcCCCCCH-HHeeeHHHHHHHHHHH
Confidence 444433 336678899999999999999998765 4 4457789999988887654 3333 3334444443
Q ss_pred CCCC-cEEEE
Q 011942 178 LPEG-GVLLL 186 (474)
Q Consensus 178 l~~G-eVlLL 186 (474)
..+| .|++|
T Consensus 78 ~~~~~~v~v~ 87 (236)
T TIGR01460 78 RFEGEKVYVI 87 (236)
T ss_pred hCCCCEEEEE
Confidence 3333 34444
No 62
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=33.37 E-value=1e+02 Score=30.62 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHh-CCceee
Q 011942 111 RAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELL-GIQVVK 162 (474)
Q Consensus 111 ~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL-~~~V~f 162 (474)
.+.-..++.|.++++. ||+++|+|......+....+..+..|.+.+ +.++.+
T Consensus 170 ~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~Il 223 (277)
T cd07410 170 ETAKKYVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAIL 223 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEE
Confidence 3455567777777888 899999997643222333444455555543 555554
No 63
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=33.21 E-value=46 Score=32.23 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 112 AAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 112 a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
+....|+.|.++|.+++|+| |||
T Consensus 24 ~~~~ai~~~~~~G~~~~iaT--GR~ 46 (272)
T PRK10530 24 ESLEALARAREAGYKVIIVT--GRH 46 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEc--CCC
Confidence 44577999999999999997 887
No 64
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=33.12 E-value=3.3e+02 Score=25.94 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=82.4
Q ss_pred HHHhcCeEEEchHHHHHHHHHcCCccCCccccc-CchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCC
Q 011942 281 LLETCDILLLGGGMIFTFYKAQGISVGSSLVEE-DKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAI 359 (474)
Q Consensus 281 Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~-~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~I 359 (474)
+++.+|.++.=|.-.--..+..|... .|. ...++..++++.+.+++.++ |.+.. +
T Consensus 2 ~~~~ad~v~~DG~~iv~~~r~~g~~~----~~Rv~G~dl~~~l~~~~~~~~~~v-----fllG~------~--------- 57 (177)
T TIGR00696 2 VINQAELVTPDGIGVVWGLKLLGYPQ----QSRVAGPDLMEELCQRAGKEKLPI-----FLYGG------K--------- 57 (177)
T ss_pred hHHhCCEEecCcHHHHHHHHHcCCCC----CCccChHHHHHHHHHHHHHcCCeE-----EEECC------C---------
Confidence 56788988887766666666666543 222 25899999999998887666 44421 1
Q ss_pred CCCCcccccChhHHHHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHH--HHHcCC
Q 011942 360 PDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAA--VEKVGV 437 (474)
Q Consensus 360 p~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aA--v~~~g~ 437 (474)
| ++--+..+.+++....-+.+-++|| |..+ =..++++.|.++.. -+.+||=|---.- +.+. .
T Consensus 58 ~------~v~~~~~~~l~~~yP~l~i~g~~g~---f~~~----~~~~i~~~I~~s~~--dil~VglG~PkQE~~~~~~-~ 121 (177)
T TIGR00696 58 P------DVLQQLKVKLIKEYPKLKIVGAFGP---LEPE----ERKAALAKIARSGA--GIVFVGLGCPKQEIWMRNH-R 121 (177)
T ss_pred H------HHHHHHHHHHHHHCCCCEEEEECCC---CChH----HHHHHHHHHHHcCC--CEEEEEcCCcHhHHHHHHh-H
Confidence 1 1122455556665555565544444 4311 12568888887542 4788886632211 1111 0
Q ss_pred CCCceEEecchhhHHHhhcCCC
Q 011942 438 AGVMSHISTGGGASLELLEGKE 459 (474)
Q Consensus 438 ~d~~shiSTGGGA~Le~LeGk~ 459 (474)
...-..+..|-|+++++++|..
T Consensus 122 ~~~~~~v~~gvGg~fd~~aG~~ 143 (177)
T TIGR00696 122 HLKPDAVMIGVGGSFDVFSGLV 143 (177)
T ss_pred HhCCCcEEEEeceeeeecccCc
Confidence 1112457778899999999974
No 65
>PRK06354 pyruvate kinase; Provisional
Probab=32.81 E-value=44 Score=37.82 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=116.9
Q ss_pred hhHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-----HhcCCCCcEEE
Q 011942 113 AVPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLL 185 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV--L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-----i~~l~~GeVlL 185 (474)
+..+|+.|++.|..+. =+||-. + +....+-...+.+++.++++|...-|.-||+.+-- --.|+.||.+.
T Consensus 22 ~~e~l~~li~aG~~v~RlN~sHg~-~---e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~i~l~~G~~~~ 97 (590)
T PRK06354 22 SPEKLRQLIEAGATTARLNFSHGD-H---EEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFEDGPIELKTGDEFI 97 (590)
T ss_pred CHHHHHHHHHcCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCCCcEEecCCCEEE
Confidence 3469999999999874 567754 1 12223334445667778999998889989887521 12367777766
Q ss_pred EecccCccccc----cCcHHHHHHHhhcCCEEeecccccccc--cC-------c---------cccccccccCcc--chh
Q 011942 186 LENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHR--AH-------A---------STEGVTKYLKPS--VAG 241 (474)
Q Consensus 186 LENlRF~~eE~----~nd~~fak~LA~l~DiyVNDAFgtaHR--~h-------a---------S~vGi~~~l~~s--~aG 241 (474)
|-.-.. .+++ -+-++|.+.+...-.||++|.-=...= .. + |--|+. +|.. -.-
T Consensus 98 l~~~~~-~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kgvn--~p~~~~~~p 174 (590)
T PRK06354 98 LTSREV-LGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGVN--FPGVSLSLP 174 (590)
T ss_pred EEeccc-CCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCccc--ccCCccCCC
Confidence 632111 1111 134689999999999999996221110 00 0 001111 1100 112
Q ss_pred hhHHHHHHHHHhhhcCCCCCeEEEe------------------cC------CcccchHHH--HHHHHHhcCeEEEchHHH
Q 011942 242 FLLQKELDYLVGAVSSPKRPFAAIV------------------GG------SKVSSKIGV--IESLLETCDILLLGGGMI 295 (474)
Q Consensus 242 ~LmekEl~~L~~~~~~p~rP~vaIl------------------GG------aKvsdKI~v--i~~Ll~kvD~lliGG~ma 295 (474)
.|=||+.+.|.-.+++. =-|+++- +| +||.++-++ |+.+++.+|.|++|=+
T Consensus 175 ~ltekD~~di~f~~~~~-vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRG-- 251 (590)
T PRK06354 175 AITEKDREDLIFGLEQG-VDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARG-- 251 (590)
T ss_pred CCCHHHHHHHHHHHHcC-CCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccc--
Confidence 34455555444333211 1122211 11 466665433 5555667999999643
Q ss_pred HHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccc
Q 011942 296 FTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPS 337 (474)
Q Consensus 296 ~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPv 337 (474)
-.|.++| -++.-..-++++++|++.|..++.-+
T Consensus 252 -----DLgve~g----~e~v~~~qk~ii~~~~~~gkpvI~AT 284 (590)
T PRK06354 252 -----DLGVEIP----AEEVPLLQKRLIKKANRLGKPVITAT 284 (590)
T ss_pred -----hhhcccC----cHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 2466666 44455678899999999998876544
No 66
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=32.38 E-value=4.8e+02 Score=25.83 Aligned_cols=38 Identities=18% Similarity=0.529 Sum_probs=25.3
Q ss_pred eCCCCCCCCcccccChhHHHHHHHH-----hccC------CeEEEeCcc
Q 011942 355 PATAIPDGWMGLDIGPDSVKTFNEA-----LDTT------KTVIWNGPM 392 (474)
Q Consensus 355 ~~~~Ip~~~~~lDIGp~Ti~~~~~~-----i~~a------ktI~WNGPm 392 (474)
....+++.|.|-.+..+.++.+.+. +.-| .|.+++||+
T Consensus 143 ~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEfhT~V~dgPl 191 (218)
T PF01902_consen 143 DADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGEFHTFVVDGPL 191 (218)
T ss_dssp ESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTTEEEEEEE-TT
T ss_pred eccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCeeEEEEEEEccc
Confidence 4567889999999999999999987 6555 599999995
No 67
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=72 Score=28.99 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=51.2
Q ss_pred CCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 011942 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (474)
Q Consensus 84 ~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~ 163 (474)
+|+...+++=.|.=-.. .=.+-+-..+.|.++|+.+||++..|++ .+ ..|+. .|.+|...
T Consensus 33 ~g~i~~vev~~np~~~~--------~~g~G~~~a~~l~~~gvdvvi~~~iG~~-a~----------~~l~~-~GIkv~~~ 92 (121)
T COG1433 33 DGEIKNVEVIENPAASA--------EKGAGIRIAELLVDEGVDVVIASNIGPN-AY----------NALKA-AGIKVYVA 92 (121)
T ss_pred CCcEEEEEEeecccccc--------cCcchHHHHHHHHHcCCCEEEECccCHH-HH----------HHHHH-cCcEEEec
Confidence 67777777777652210 0112233578899999999999999965 11 23333 36778776
Q ss_pred cCCCCHHHHHHHhcCCCCcE
Q 011942 164 DDCIGPEVEKLVASLPEGGV 183 (474)
Q Consensus 164 ~d~ig~~v~~~i~~l~~GeV 183 (474)
+- ..++++|+++..|+.
T Consensus 93 ~~---~~V~e~i~~~~~g~l 109 (121)
T COG1433 93 PG---GTVEEAIKAFLEGEL 109 (121)
T ss_pred CC---CCHHHHHHHHhcCCc
Confidence 55 478888888888764
No 68
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.12 E-value=5.5e+02 Score=25.97 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=88.6
Q ss_pred HhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEe
Q 011942 110 IRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187 (474)
Q Consensus 110 I~a~lpTIk~L~~~--gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLE 187 (474)
++..+.-++.+.++ ...+|+|+=+. | -..+.++.+.+.+++. |..=..++|.--++.++.++.++.-. |+
T Consensus 73 ~~~~~~~~~~~r~~~~~~p~vlm~Y~N-~---i~~~G~e~f~~~~~~a-GvdGviipDLp~ee~~~~~~~~~~~g---l~ 144 (258)
T PRK13111 73 LADVFELVREIREKDPTIPIVLMTYYN-P---IFQYGVERFAADAAEA-GVDGLIIPDLPPEEAEELRAAAKKHG---LD 144 (258)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeccc-H---HhhcCHHHHHHHHHHc-CCcEEEECCCCHHHHHHHHHHHHHcC---Cc
Confidence 33456667777644 34578888766 2 1345777788888776 77766778876666666665554322 34
Q ss_pred cccCccccccCcHHHHHHHhhcCC--EEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEE
Q 011942 188 NVRFYKEEEKNDPEFAKKLASLAD--LYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAI 265 (474)
Q Consensus 188 NlRF~~eE~~nd~~fak~LA~l~D--iyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaI 265 (474)
++-|..... .++-.+.++++++ ||+--- ..++|...-. -..++..++.+.+ ..+.|.++
T Consensus 145 ~I~lvap~t--~~eri~~i~~~s~gfIY~vs~--------~GvTG~~~~~-----~~~~~~~i~~vk~---~~~~pv~v- 205 (258)
T PRK13111 145 LIFLVAPTT--TDERLKKIASHASGFVYYVSR--------AGVTGARSAD-----AADLAELVARLKA---HTDLPVAV- 205 (258)
T ss_pred EEEEeCCCC--CHHHHHHHHHhCCCcEEEEeC--------CCCCCcccCC-----CccHHHHHHHHHh---cCCCcEEE-
Confidence 444444322 1234455555554 454111 1223332211 1223334444444 44677543
Q ss_pred ecCCcccchHHHHHHHHHhcCeEEEchHHHHHHH
Q 011942 266 VGGSKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (474)
Q Consensus 266 lGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (474)
|.-|+++-.+-+ +++.+|.+++|-++...+-
T Consensus 206 --GfGI~~~e~v~~-~~~~ADGviVGSaiv~~~~ 236 (258)
T PRK13111 206 --GFGISTPEQAAA-IAAVADGVIVGSALVKIIE 236 (258)
T ss_pred --EcccCCHHHHHH-HHHhCCEEEEcHHHHHHHH
Confidence 555766666554 4466999999999876653
No 69
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=31.88 E-value=14 Score=36.13 Aligned_cols=54 Identities=30% Similarity=0.614 Sum_probs=41.6
Q ss_pred EEecccCccccccCcHHHHHHHhhc--CCEEe-eccccc-ccccCccc----cccccccCccchhhhH
Q 011942 185 LLENVRFYKEEEKNDPEFAKKLASL--ADLYV-NDAFGT-AHRAHAST----EGVTKYLKPSVAGFLL 244 (474)
Q Consensus 185 LLENlRF~~eE~~nd~~fak~LA~l--~DiyV-NDAFgt-aHR~haS~----vGi~~~l~~s~aG~Lm 244 (474)
+.|..||.+ |+|+.+..+| +||-| .+-||| |.|-||-. +||...+.+|+|---.
T Consensus 42 ~f~~~r~~~------PdF~~n~~~yq~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy 103 (191)
T COG0066 42 LFEDWRYLD------PDFVLNVPPYQGGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFY 103 (191)
T ss_pred ccccccccC------cchhhcCCccCCccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHh
Confidence 567788765 8999999987 99988 999998 56899876 5777666666665433
No 70
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=31.42 E-value=2.7e+02 Score=22.96 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=56.3
Q ss_pred cCcchhHhhhhHHHHHHHH-CCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCC
Q 011942 104 ITDDTRIRAAVPTIKHLIQ-NGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEG 181 (474)
Q Consensus 104 I~Dd~RI~a~lpTIk~L~~-~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~G 181 (474)
|.-..|.+=++--++++.. .+.+ ++|.+=.. ..|-++-.++|. ..+.||.++++.+.+.+.+.++.+...
T Consensus 3 i~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~----~~Dalsa~~~a~----~~~~PIll~~~~l~~~~~~~l~~~~~~ 74 (92)
T PF04122_consen 3 ISGADRYETSAKVAKKFYPDNKSDKVYIASGDN----FADALSASPLAA----KNNAPILLVNNSLPSSVKAFLKSLNIK 74 (92)
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCEEEEEeCcc----hhhhhhhHHHHH----hcCCeEEEECCCCCHHHHHHHHHcCCC
Confidence 4456788888888888654 2444 66664333 235556555554 478999999999999999999999888
Q ss_pred cEEEEeccc
Q 011942 182 GVLLLENVR 190 (474)
Q Consensus 182 eVlLLENlR 190 (474)
.|+++-...
T Consensus 75 ~v~iiGg~~ 83 (92)
T PF04122_consen 75 KVYIIGGEG 83 (92)
T ss_pred EEEEECCCC
Confidence 888885443
No 71
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=31.34 E-value=96 Score=32.62 Aligned_cols=66 Identities=27% Similarity=0.344 Sum_probs=47.7
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec-cCCCCHH--HHHHHhcCCCCcE-EEEeccc
Q 011942 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA-DDCIGPE--VEKLVASLPEGGV-LLLENVR 190 (474)
Q Consensus 117 Ik~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~-~d~ig~~--v~~~i~~l~~GeV-lLLENlR 190 (474)
.++|.++|-+|+|+| |- .--|+.+++.+.+.-+.+|+++ -|+..++ -++.-+.|...|| +|.-|+=
T Consensus 66 A~eLAkrG~nvvLIs---Rt-----~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 66 ARELAKRGFNVVLIS---RT-----QEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred HHHHHHcCCEEEEEe---CC-----HHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEeccc
Confidence 578999999999987 32 2348899999999999988885 4665444 3444466777777 5556654
No 72
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=30.86 E-value=2.1e+02 Score=28.75 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=70.1
Q ss_pred eEEEEeccCCCC-----C-CCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCce
Q 011942 87 KVFVRADLNVPL-----D-DNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQV 160 (474)
Q Consensus 87 ~VlvRvD~NVPl-----~-~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V 160 (474)
.|.-|.|.. |. + ..+...+...+++++.--+.+.+.||..|++.+. | ...++++.+.+..|+
T Consensus 127 ~ViaRtd~~-pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~---------~e~~~~i~~~~~~P~ 194 (240)
T cd06556 127 PVIAHTGLT-PQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--P---------VELAKQITEALAIPL 194 (240)
T ss_pred eEEEEeCCc-hhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--C---------HHHHHHHHHhCCCCE
Confidence 677799983 21 1 0123445667888888889999999999999765 3 256778888888888
Q ss_pred eeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcC
Q 011942 161 VKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLA 210 (474)
Q Consensus 161 ~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~ 210 (474)
.+. +-|+ .-.|++|.+..+.=+.++ .-|.|+|+...+.
T Consensus 195 ~~~--gag~--------~~dgq~lv~~d~lg~~~~--~~p~f~~~~~~~~ 232 (240)
T cd06556 195 AGI--GAGS--------GTDGQFLVLADAFGITGG--HIPKFAKNFHAET 232 (240)
T ss_pred EEE--ecCc--------CCCceEEeHHhhhcccCC--CCCchHHHHhhhH
Confidence 774 2232 358899999998655433 3678888877654
No 73
>PLN02765 pyruvate kinase
Probab=30.64 E-value=52 Score=36.84 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=66.8
Q ss_pred hHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-----HhcCCCCcEEEE
Q 011942 114 VPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-----VASLPEGGVLLL 186 (474)
Q Consensus 114 lpTIk~L~~~gaKvV--L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-----i~~l~~GeVlLL 186 (474)
..+|+.|+++|..|. =+||-.. +.....-...+.+++.++++|...-|.-||+++-- --.|+.|+.+.|
T Consensus 43 ~e~l~~li~aGm~v~RlNfSHg~~----e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~~i~l~~G~~~~l 118 (526)
T PLN02765 43 VEVIEACLKAGMSVARFDFSWGDA----EYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTEKPISLKAGNTVTL 118 (526)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCCCcEecCCCCEEEE
Confidence 479999999999975 4788663 22233334445667778999999999999987721 123667777766
Q ss_pred ecccCccccc----cCcHHHHHHHhhcCCEEeecc
Q 011942 187 ENVRFYKEEE----KNDPEFAKKLASLADLYVNDA 217 (474)
Q Consensus 187 ENlRF~~eE~----~nd~~fak~LA~l~DiyVNDA 217 (474)
-.=.-..+++ -+-++|.+.+...--||++|.
T Consensus 119 ~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG 153 (526)
T PLN02765 119 TPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQY 153 (526)
T ss_pred ecccccCCCCCEEeechHHHHhhcCCCCEEEECCc
Confidence 3211101111 134689999999999999984
No 74
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=30.35 E-value=1.2e+02 Score=26.93 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC----CCCCCChhhhHHHHHH
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG----VTPKFSLAPLVPRLSE 154 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK--vVL~SHlGRPkg----~~~~~SL~pva~~Ls~ 154 (474)
+++||.|++=.++.-|. +..+.+-+=+|..+.+.||+ ++++|+++--.. .-+-+|.+-+|+-|+.
T Consensus 44 ~v~g~dv~iiqs~~~~~--------nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 44 SVRGKDVFIIQSTSPPV--------NDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAKLLSA 114 (116)
T ss_dssp --TTSEEEEE---SSSH--------HHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHHHHHH
T ss_pred cccCCceEEEEecCCch--------hHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHHHHHh
Confidence 57788888766665443 34778888899999999998 568888764332 2234677777777654
No 75
>PLN02285 methionyl-tRNA formyltransferase
Probab=30.18 E-value=2.1e+02 Score=30.00 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=31.2
Q ss_pred hhHHHHHHHHC------CCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCce
Q 011942 113 AVPTIKHLIQN------GAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQV 160 (474)
Q Consensus 113 ~lpTIk~L~~~------gaKv-VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V 160 (474)
++++++.|+++ +..| .++++-.+|.|...+..-.|+.++. +..|.|.
T Consensus 18 a~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A-~~~gIp~ 71 (334)
T PLN02285 18 AATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLA-LDRGFPP 71 (334)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHH-HHcCCCc
Confidence 67899999984 6775 4678888887643444444665554 4457773
No 76
>PRK09206 pyruvate kinase; Provisional
Probab=30.15 E-value=73 Score=35.19 Aligned_cols=208 Identities=18% Similarity=0.241 Sum_probs=118.7
Q ss_pred hhHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-H-----hcCCCCcEE
Q 011942 113 AVPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V-----ASLPEGGVL 184 (474)
Q Consensus 113 ~lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i-----~~l~~GeVl 184 (474)
+..+|+.|++.|..| +=+||-.. ++-..+-...+.+++.+|++|...-|.-||+++-- + -.|+.|+.+
T Consensus 16 ~~e~l~~li~aGm~v~RlN~sHg~~----~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~~~i~l~~G~~~ 91 (470)
T PRK09206 16 SEEMLTKLLDAGMNVMRLNFSHGDY----AEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGGNDVSLKAGQTF 91 (470)
T ss_pred CHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCCCeeeecCCCEE
Confidence 346899999999887 45677541 11122333346677778999998889989887521 1 125566666
Q ss_pred EEecccCccccc----cCcHHHHHHHhhcCCEEeeccccccc-------ccC---------ccccccccccCcc--chhh
Q 011942 185 LLENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAH-------RAH---------ASTEGVTKYLKPS--VAGF 242 (474)
Q Consensus 185 LLENlRF~~eE~----~nd~~fak~LA~l~DiyVNDAFgtaH-------R~h---------aS~vGi~~~l~~s--~aG~ 242 (474)
.|-.-+=+.+++ -+.++|.+.+.+.--||++|..=... ..+ .|--|+. +|.. -.-.
T Consensus 92 ~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn--~p~~~~~lp~ 169 (470)
T PRK09206 92 TFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN--LPGVSIALPA 169 (470)
T ss_pred EEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee--ccCcccCCCC
Confidence 553211011111 13467889888888899998543211 000 0111222 1110 1122
Q ss_pred hHHHHHHHHHhhhcCCCCCeEEE------------------ecC------CcccchHHH--HHHHHHhcCeEEEchHHHH
Q 011942 243 LLQKELDYLVGAVSSPKRPFAAI------------------VGG------SKVSSKIGV--IESLLETCDILLLGGGMIF 296 (474)
Q Consensus 243 LmekEl~~L~~~~~~p~rP~vaI------------------lGG------aKvsdKI~v--i~~Ll~kvD~lliGG~ma~ 296 (474)
|=||.++.|.-.+++. =-|+|. .|| +||.++-++ |+.++.-+|.|++|=|
T Consensus 170 ltekD~~di~f~~~~~-vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVaRG--- 245 (470)
T PRK09206 170 LAEKDKQDLIFGCEQG-VDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARG--- 245 (470)
T ss_pred CCHHHHHHHHHHHHcC-CCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEECcc---
Confidence 4456655554444221 122222 122 677776544 5666778999999643
Q ss_pred HHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccce
Q 011942 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSD 338 (474)
Q Consensus 297 tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD 338 (474)
-.|.++| -++....-+++++.|++.|+.++.-+-
T Consensus 246 ----DLgvelg----~e~vp~~qk~ii~~~~~~gkpvI~ATq 279 (470)
T PRK09206 246 ----DLGVEIP----VEEVIFAQKMMIEKCNRARKVVITATQ 279 (470)
T ss_pred ----hhhhhcC----HHHHHHHHHHHHHHHHHcCCCEEEEch
Confidence 2466666 344456789999999999988766443
No 77
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=29.39 E-value=3.4e+02 Score=29.70 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=55.8
Q ss_pred ecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccccccCccchhhhHHHH-----HHHHHhhhcCCCCC
Q 011942 187 ENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKE-----LDYLVGAVSSPKRP 261 (474)
Q Consensus 187 ENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekE-----l~~L~~~~~~p~rP 261 (474)
=|++=|++-..|-.-|.--|.+.--|--.|--.=-|-.|.|-+.+.-.+-. ..-+-+.+| .+.+.+.. ...||
T Consensus 90 anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~-~v~Y~vd~et~~IDyD~~~k~a-~e~kP 167 (413)
T COG0112 90 ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFN-VVSYGVDPETGLIDYDEVEKLA-KEVKP 167 (413)
T ss_pred cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEE-eEecccccccCccCHHHHHHHH-HHhCC
Confidence 356656655555555554444544455567777789999976666533211 111112222 33444422 24689
Q ss_pred eEEEecCCcccchHH--HHHHHHHhcCeEE
Q 011942 262 FAAIVGGSKVSSKIG--VIESLLETCDILL 289 (474)
Q Consensus 262 ~vaIlGGaKvsdKI~--vi~~Ll~kvD~ll 289 (474)
.+.|.|+|-.+-.+. -++.+.+.|...+
T Consensus 168 K~ii~G~SaY~r~id~~~~reIad~VGA~L 197 (413)
T COG0112 168 KLIIAGGSAYSRPIDFKRFREIADEVGAYL 197 (413)
T ss_pred CEEEECccccccccCHHHHHHHHHHhCceE
Confidence 999999987776663 3444455444333
No 78
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.60 E-value=2.6e+02 Score=26.38 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=40.8
Q ss_pred cHHHHHHHhhcCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCC-CCeEEEecCCcccchHHH
Q 011942 199 DPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPK-RPFAAIVGGSKVSSKIGV 277 (474)
Q Consensus 199 d~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~-rP~vaIlGGaKvsdKI~v 277 (474)
..+..+.+...+|++. |++.|. .+.|- .+- + .+ .+.++.+.+...... .|.+++.||-+.. -
T Consensus 121 ~~e~~~~~~~~~d~i~---~~~~~~---g~tg~-~~~-~--~~---~~~i~~~~~~~~~~~~~~~i~v~GGI~~~----n 183 (220)
T PRK05581 121 PLEPLEDVLDLLDLVL---LMSVNP---GFGGQ-KFI-P--EV---LEKIRELRKLIDERGLDILIEVDGGINAD----N 183 (220)
T ss_pred CHHHHHHHHhhCCEEE---EEEECC---CCCcc-ccc-H--HH---HHHHHHHHHHHHhcCCCceEEEECCCCHH----H
Confidence 3456777888899433 343332 33331 111 1 12 223333333332210 1667888998774 3
Q ss_pred HHHHH-HhcCeEEEchHH
Q 011942 278 IESLL-ETCDILLLGGGM 294 (474)
Q Consensus 278 i~~Ll-~kvD~lliGG~m 294 (474)
+..++ .-+|.+++|..+
T Consensus 184 v~~l~~~GaD~vvvgSai 201 (220)
T PRK05581 184 IKECAEAGADVFVAGSAV 201 (220)
T ss_pred HHHHHHcCCCEEEEChhh
Confidence 33344 348999988665
No 79
>PTZ00114 Heat shock protein 60; Provisional
Probab=28.50 E-value=6.2e+02 Score=28.33 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCeEEEecCCc----------ccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 260 RPFAAIVGGSK----------VSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 260 rP~vaIlGGaK----------vsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
+-.+.++||+- +.|-+.++++.++ +.++-|||.++.-+..
T Consensus 387 ~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~--~gvVpGGGa~e~~~s~ 436 (555)
T PTZ00114 387 GVAVIKVGGASEVEVNEKKDRIEDALNATRAAVE--EGIVPGGGVALLRASK 436 (555)
T ss_pred CeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh--cCcccCCcHHHHHHHH
Confidence 44566788864 6788888888887 7799999998877753
No 80
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=28.31 E-value=1.2e+02 Score=28.22 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=32.5
Q ss_pred cCcchhH----hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH
Q 011942 104 ITDDTRI----RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE 154 (474)
Q Consensus 104 I~Dd~RI----~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~ 154 (474)
+++..++ ....++|+.|.++|.++.|+|+..++. ...++.+.+.+++.+
T Consensus 34 ~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~--~~~~~~~~~~~~i~~ 86 (166)
T TIGR01664 34 PTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIG--RGKLSAESFKNKIEA 86 (166)
T ss_pred cCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccc--cCcccHHHHHHHHHH
Confidence 3455555 458899999999999999999976542 123455444333333
No 81
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=26.98 E-value=99 Score=30.57 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=60.6
Q ss_pred CCCCCCCCcccccChhHHHHHHHHhccC-CeEEEeCcccccCccCchHHHHHHHHHHHhhcCC-CcEEEEecchHHHHHH
Q 011942 356 ATAIPDGWMGLDIGPDSVKTFNEALDTT-KTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGK-GVTTIIGGGDSVAAVE 433 (474)
Q Consensus 356 ~~~Ip~~~~~lDIGp~Ti~~~~~~i~~a-ktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~-ga~sIvGGGDt~aAv~ 433 (474)
.+..|+.| +|=.+|+..|-....++ ..|+-.---|+||. +..| .+.+.|..+.=+ |-++|=+ =.=--+.
T Consensus 107 ~DplpHSW---~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~--~~~~--kLv~eI~A~dl~~~~t~vD~--~~P~Ll~ 177 (212)
T COG2054 107 TDPLPHSW---EVTSDSISVWIAAKAGATEVVKATDVDGIYEE--DPKG--KLVREIRASDLKTGETSVDP--YLPKLLV 177 (212)
T ss_pred CCCCCcce---eecccHHHHHHHHHcCCcEEEEEecCCccccc--CCcc--hhhhhhhHhhcccCcccccc--hhhHHHH
Confidence 35678999 88999999999999999 88899999999996 5555 677766544311 1111111 0111233
Q ss_pred HcCCCCCceEEecchh--hHHHhhcCCCCch
Q 011942 434 KVGVAGVMSHISTGGG--ASLELLEGKELPG 462 (474)
Q Consensus 434 ~~g~~d~~shiSTGGG--A~Le~LeGk~LPg 462 (474)
++++. .+|-.|+- =.|..|.|++-+|
T Consensus 178 k~~m~---~~Vvng~~pervi~~lrGk~~v~ 205 (212)
T COG2054 178 KYKMN---CRVVNGKEPERVILALRGKEVVG 205 (212)
T ss_pred HcCCc---eEEECCCCHHHHHHHHhccccce
Confidence 44321 36666653 4577777777665
No 82
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.88 E-value=3.9e+02 Score=28.95 Aligned_cols=111 Identities=21% Similarity=0.198 Sum_probs=63.4
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCC-CCcEEEEecccCccc
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLP-EGGVLLLENVRFYKE 194 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~-~GeVlLLENlRF~~e 194 (474)
+|..|++.|-+||+..+. + ..........-+..|.+|.+++|.. +.++..+.+. +-.++++|++-.-.+
T Consensus 100 al~all~~Gd~Vv~~~~~-----y---~~t~~~~~~~l~~~Gi~v~~vdd~~--d~e~l~~ai~~~tklV~ie~~sNp~G 169 (436)
T PRK07812 100 AILNLAGAGDHIVSSPRL-----Y---GGTYNLFHYTLPKLGIEVSFVEDPD--DLDAWRAAVRPNTKAFFAETISNPQI 169 (436)
T ss_pred HHHHHhCCCCEEEEeCCc-----c---hHHHHHHHHHhhcCeEEEEEECCCC--CHHHHHHhCCCCCeEEEEECCCCCCC
Confidence 456667888887665421 1 1111112222233688999997543 2323233343 446899999987666
Q ss_pred cccCcHHHHHHHhhcCCEEeecc-ccc-------ccccCccccccccccC
Q 011942 195 EEKNDPEFAKKLASLADLYVNDA-FGT-------AHRAHASTEGVTKYLK 236 (474)
Q Consensus 195 E~~nd~~fak~LA~l~DiyVNDA-Fgt-------aHR~haS~vGi~~~l~ 236 (474)
+..+=+++++...++.=++|.|+ |++ .|-+.-.+...+|++.
T Consensus 170 ~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lg 219 (436)
T PRK07812 170 DVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLG 219 (436)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccC
Confidence 66665666665556555666777 554 3445555556666653
No 83
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=26.40 E-value=2.1e+02 Score=30.13 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHhhhcCCCCCeEEEecCC-cccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 248 LDYLVGAVSSPKRPFAAIVGGS-KVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 248 l~~L~~~~~~p~rP~vaIlGGa-KvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
++....+++.-+++.++|+||. |-.|--.+.+.+.+.++.+++-|.-+..+...
T Consensus 320 ~~a~~~al~~~~~~ii~I~Gg~~~~~d~~~~~~~l~~~~~~v~~~G~~~~~l~~~ 374 (433)
T TIGR01087 320 VHATLAALSAFDNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIGEDAAKIAPL 374 (433)
T ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 3333444443345799999985 22222234454555678898888777666554
No 84
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=26.08 E-value=4.4e+02 Score=26.19 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHH-----h
Q 011942 210 ADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLE-----T 284 (474)
Q Consensus 210 ~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~-----k 284 (474)
.++++.|..||.|+..-.+-|..+++ +.+.....|++++-+.+ -..+...++.|-. .
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l-----------------~~L~~~g~~~~~~Tnns-~~~~~~~~~~l~~~G~~~~ 63 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELL-----------------DRLARAGKAALFVTNNS-TKSRAEYALKFARLGFNGL 63 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHH-----------------HHHHHCCCeEEEEeCCC-CCCHHHHHHHHHHcCCCCC
Q ss_pred cCeEEEchHHHHHHHHHcCCc------cCCcccccCchHHHHHHHHHHhhCCCeEEc---------------------cc
Q 011942 285 CDILLLGGGMIFTFYKAQGIS------VGSSLVEEDKLDLATTLLAKAKAKGVNLLL---------------------PS 337 (474)
Q Consensus 285 vD~lliGG~ma~tFL~A~G~~------iG~SlvE~~~~~~a~~il~~a~~~g~kIil---------------------Pv 337 (474)
.|.++..|..+-.||+.+... +|. ..+.+..++.|.+++- ++
T Consensus 64 ~~~i~ts~~~~~~~l~~~~~~~~~v~~iG~-----------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (279)
T TIGR01452 64 AEQLFSSALCAARLLRQPPDAPKAVYVIGE-----------EGLRAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENV 132 (279)
T ss_pred hhhEecHHHHHHHHHHhhCcCCCEEEEEcC-----------HHHHHHHHHCCCEEecCcccccccchhhcccccccCCCC
Q ss_pred eEEE
Q 011942 338 DVVI 341 (474)
Q Consensus 338 D~vv 341 (474)
|.|+
T Consensus 133 ~~Vv 136 (279)
T TIGR01452 133 GAVV 136 (279)
T ss_pred CEEE
No 85
>PRK10799 metal-binding protein; Provisional
Probab=25.82 E-value=57 Score=32.47 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccC
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 165 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d 165 (474)
+.....++|-.+|.+.|.. .+.+-++.++++|++.++.+|.|++.
T Consensus 199 ~~~~A~~~gl~li~~GH~~-----sE~~~~~~la~~L~~~~~~~~~~i~~ 243 (247)
T PRK10799 199 TIHSAREQGLHFYAAGHHA-----TERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_pred HHHHHHHCCCeEEEcCchH-----HHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 4566677777777777765 35667889999999999999999864
No 86
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=25.68 E-value=1.3e+02 Score=29.86 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=36.3
Q ss_pred CCCCeEEEEeccCCCCCCC-C-------ccCcchhHhhhhHHHHHHHHCCCeEEEEecCC
Q 011942 83 LKGKKVFVRADLNVPLDDN-Q-------NITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (474)
Q Consensus 83 l~gK~VlvRvD~NVPl~~~-g-------~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlG 134 (474)
..+|.=.+.+|++-++... + ...|+.-+..+..+|++|.++|.+++++||-.
T Consensus 154 ~~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~ 213 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD 213 (300)
T ss_pred CCCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence 3444445566888777531 1 12256667888899999999999999999644
No 87
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=25.37 E-value=5.2e+02 Score=24.64 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=39.4
Q ss_pred CCCcccccChhHHHHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhh
Q 011942 361 DGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADL 414 (474)
Q Consensus 361 ~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~ 414 (474)
+...++==|.-|++++.+++...++=.-+-|.+++-...|-++-.+..+.+.+.
T Consensus 98 da~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~ 151 (178)
T TIGR00730 98 DAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQE 151 (178)
T ss_pred CEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHC
Confidence 334445557799999999997655545567888887778888888887777654
No 88
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=25.35 E-value=5.6e+02 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.5
Q ss_pred chhHhhhhHHHHHHHHCCCeEEEEecCC
Q 011942 107 DTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (474)
Q Consensus 107 d~RI~a~lpTIk~L~~~gaKvVL~SHlG 134 (474)
.........+|++|+++|.+|+++||..
T Consensus 256 ~~Y~~~la~~i~~Li~~g~~Vv~lp~~~ 283 (426)
T PRK10017 256 QAYEKAFAGVVNRIIDEGYQVIALSTCT 283 (426)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3344666788999999999999999974
No 89
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=25.34 E-value=79 Score=29.86 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=27.2
Q ss_pred CCccCcchh--HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 101 NQNITDDTR--IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 101 ~g~I~Dd~R--I~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
+|.++++.+ +.....+|+.|.++|-+++++| |||
T Consensus 7 DGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~T--gR~ 42 (221)
T TIGR02463 7 DGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCT--SKT 42 (221)
T ss_pred CCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 377777644 5667899999999999999998 676
No 90
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.28 E-value=2.1e+02 Score=29.69 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC-----CCCCCChhhhHHHHHH
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG-----VTPKFSLAPLVPRLSE 154 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK--vVL~SHlGRPkg-----~~~~~SL~pva~~Ls~ 154 (474)
++.||.|++-.+++-|.| ..+.+-+=.+..|.+.||| ++++|.++--.. ..+-+|.+-+|+.|+.
T Consensus 44 ~v~g~~V~ii~s~~~~~n--------d~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~ 115 (309)
T PRK01259 44 NVRGKDVFIIQSTCAPTN--------DNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLET 115 (309)
T ss_pred CCCCCEEEEECCCCCCCc--------HHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhh
Confidence 578999999877665543 2578888899999999998 467887664321 1235677777777766
Q ss_pred H
Q 011942 155 L 155 (474)
Q Consensus 155 l 155 (474)
.
T Consensus 116 ~ 116 (309)
T PRK01259 116 A 116 (309)
T ss_pred c
Confidence 4
No 91
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=25.09 E-value=1.5e+02 Score=29.08 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=34.0
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 011942 110 IRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f 162 (474)
++.....|+.+. +++. ||++.|||......+.-..+.+|+.|-+ -|.++.+
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lid-aGaDiIi 221 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGIEYENYPTPEQRELARALID-AGADIII 221 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHH-cCCCEEE
Confidence 477788888887 5666 8999999976443344445556666555 3666655
No 92
>PLN02645 phosphoglycolate phosphatase
Probab=25.06 E-value=4.4e+02 Score=26.84 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=63.5
Q ss_pred HHHHHHhhcCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHH
Q 011942 201 EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIES 280 (474)
Q Consensus 201 ~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~ 280 (474)
++.+ |..-.|.|+.|..||.|+..-- + |. -.+.|.++. +..+|++.+-+.+. ...-.+++.
T Consensus 20 ~~~~-~~~~~~~~~~D~DGtl~~~~~~-------~-~g--------a~e~l~~lr-~~g~~~~~~TN~~~-~~~~~~~~~ 80 (311)
T PLN02645 20 NADE-LIDSVETFIFDCDGVIWKGDKL-------I-EG--------VPETLDMLR-SMGKKLVFVTNNST-KSRAQYGKK 80 (311)
T ss_pred HHHH-HHHhCCEEEEeCcCCeEeCCcc-------C-cC--------HHHHHHHHH-HCCCEEEEEeCCCC-CCHHHHHHH
Confidence 4444 4445899999999999986421 1 21 123333332 34778877777662 223333444
Q ss_pred HHH-----hcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEE
Q 011942 281 LLE-----TCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLL 334 (474)
Q Consensus 281 Ll~-----kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIi 334 (474)
|-+ ..|.|+..+..+-.+|+..++.=++..+-=+. ..+.+.+++.|++++
T Consensus 81 l~~lGi~~~~~~I~ts~~~~~~~l~~~~~~~~~~V~viG~----~~~~~~l~~~Gi~~~ 135 (311)
T PLN02645 81 FESLGLNVTEEEIFSSSFAAAAYLKSINFPKDKKVYVIGE----EGILEELELAGFQYL 135 (311)
T ss_pred HHHCCCCCChhhEeehHHHHHHHHHhhccCCCCEEEEEcC----HHHHHHHHHCCCEEe
Confidence 422 37889999999999998766532222111111 133445566777653
No 93
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.82 E-value=2.1e+02 Score=28.94 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=41.5
Q ss_pred hhcCCCCCeEEEecCCccc----------chHHHHHHHHH--hcCeEEEchH----------HHHHHHHHcCCccCCccc
Q 011942 254 AVSSPKRPFAAIVGGSKVS----------SKIGVIESLLE--TCDILLLGGG----------MIFTFYKAQGISVGSSLV 311 (474)
Q Consensus 254 ~~~~p~rP~vaIlGGaKvs----------dKI~vi~~Ll~--kvD~lliGG~----------ma~tFL~A~G~~iG~Slv 311 (474)
+-+.|+++.+.|+|+++.. +.+..--.|.+ ++.+|++.|+ ..--.|.++|++-..=++
T Consensus 39 ~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~ 118 (239)
T PRK10834 39 LQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVL 118 (239)
T ss_pred HhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEe
Confidence 3446889999999998752 22322233333 5788888886 123345567776665567
Q ss_pred ccCchHHHHHH
Q 011942 312 EEDKLDLATTL 322 (474)
Q Consensus 312 E~~~~~~a~~i 322 (474)
|+...+.-+++
T Consensus 119 e~~s~nT~en~ 129 (239)
T PRK10834 119 DYAGFRTLDSI 129 (239)
T ss_pred cCCCCCHHHHH
Confidence 76554433333
No 94
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.79 E-value=1.9e+02 Score=26.45 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCC-ceeeccCC--CCHHH--HHHHhcCC--CCcEE
Q 011942 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGI-QVVKADDC--IGPEV--EKLVASLP--EGGVL 184 (474)
Q Consensus 112 a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~-~V~f~~d~--ig~~v--~~~i~~l~--~GeVl 184 (474)
.+..+|++|.++|.++.|+| |.. ...+..+.+.+|. +..+..++ ....- .+.++.|+ +++|+
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~T--GD~---------~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAILT--GDN---------ESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp THHHHHHHHHHTTEEEEEEE--SSE---------HHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEE
T ss_pred hhhhhhhhhhccCcceeeee--ccc---------cccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEE
Confidence 46789999999999999998 422 2455666777776 32222233 22222 56666665 45666
Q ss_pred EE
Q 011942 185 LL 186 (474)
Q Consensus 185 LL 186 (474)
+.
T Consensus 200 ~v 201 (215)
T PF00702_consen 200 MV 201 (215)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 95
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.62 E-value=3.1e+02 Score=27.14 Aligned_cols=54 Identities=17% Similarity=0.421 Sum_probs=35.8
Q ss_pred CCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhh---hHHHHHHHhC
Q 011942 96 VPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAP---LVPRLSELLG 157 (474)
Q Consensus 96 VPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~p---va~~Ls~lL~ 157 (474)
.|++++|+| |...++++ |++|+++|.+ ++++.+-|. -..+|.+. +.+...+..+
T Consensus 7 TPf~~dg~i-D~~~~~~~---i~~l~~~Gv~gi~~~GstGE----~~~ls~~Er~~l~~~~~~~~~ 64 (281)
T cd00408 7 TPFTADGEV-DLDALRRL---VEFLIEAGVDGLVVLGTTGE----APTLTDEERKEVIEAVVEAVA 64 (281)
T ss_pred CCcCCCCCc-CHHHHHHH---HHHHHHcCCCEEEECCCCcc----cccCCHHHHHHHHHHHHHHhC
Confidence 588877774 77777775 6899999998 777888773 24455543 3344444444
No 96
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=24.50 E-value=1.4e+02 Score=31.76 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=38.6
Q ss_pred CeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEec
Q 011942 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132 (474)
Q Consensus 86 K~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SH 132 (474)
||+++.+=-++=-+.+| -+|..+|......|..|.++|-+|||++-
T Consensus 6 kriVIKiGgs~L~~~~~-~l~~~~i~~la~~I~~l~~~G~~vvlVsS 51 (368)
T PRK13402 6 KRIVVKVGSSLLTPHHQ-GCSSHYLLGLVQQIVYLKDQGHQVVLVSS 51 (368)
T ss_pred cEEEEEEchhhccCCCC-CcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 78888888777655444 36889999999999999999999888887
No 97
>PLN02623 pyruvate kinase
Probab=24.30 E-value=94 Score=35.31 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=114.1
Q ss_pred hHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHh-CCceeeccCCCCHHHHHH-H---hcCCCCcEEEE
Q 011942 114 VPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELL-GIQVVKADDCIGPEVEKL-V---ASLPEGGVLLL 186 (474)
Q Consensus 114 lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL-~~~V~f~~d~ig~~v~~~-i---~~l~~GeVlLL 186 (474)
..+|+.|++.|..| +=+||-.. +.-..+-...+.+++.+ +++|...-|.-||+++-- + -.|++||.+.|
T Consensus 125 ~e~l~~li~aGmnv~RlNfSHg~~----e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~l 200 (581)
T PLN02623 125 REMIWKLAEAGMNVARLNMSHGDH----ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTF 200 (581)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEE
Confidence 47999999999997 45677542 11112222333344444 588888889989887521 1 24788888877
Q ss_pred ecccCccccc---cCcHHHHHHHhhcCCEEeeccccccc-------ccC---------ccccccccccCcc--chhhhHH
Q 011942 187 ENVRFYKEEE---KNDPEFAKKLASLADLYVNDAFGTAH-------RAH---------ASTEGVTKYLKPS--VAGFLLQ 245 (474)
Q Consensus 187 ENlRF~~eE~---~nd~~fak~LA~l~DiyVNDAFgtaH-------R~h---------aS~vGi~~~l~~s--~aG~Lme 245 (474)
-+-+-...|+ -+-++|.+.+..---||++|.-=... ..+ .|--|+. ++.. -.-.|=|
T Consensus 201 t~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgvN--lpg~~~~lp~lTe 278 (581)
T PLN02623 201 TIKRGVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLN--VRGKSATLPSITE 278 (581)
T ss_pred ecCccCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCCCCC--CCCCcCCCCCCCH
Confidence 5432111111 13478999999999999999521110 000 0000111 0000 0112334
Q ss_pred HHHHHH-------------------------HhhhcCCC-CCeEEEecCCcccchHHH--HHHHHHhcCeEEEchHHHHH
Q 011942 246 KELDYL-------------------------VGAVSSPK-RPFAAIVGGSKVSSKIGV--IESLLETCDILLLGGGMIFT 297 (474)
Q Consensus 246 kEl~~L-------------------------~~~~~~p~-rP~vaIlGGaKvsdKI~v--i~~Ll~kvD~lliGG~ma~t 297 (474)
|.++.| .+.+..-. ++. | -+||.++-++ |+.++.-+|.|++|=+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~--i--iakIEt~eaVeNldeIl~g~DgImIgrg---- 350 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIH--V--IVKIESADSIPNLHSIITASDGAMVARG---- 350 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcce--E--EEEECCHHHHHhHHHHHHhCCEEEECcc----
Confidence 444443 33332211 211 1 2577766544 5566777999999743
Q ss_pred HHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccc
Q 011942 298 FYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPS 337 (474)
Q Consensus 298 FL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPv 337 (474)
-.|.++|- ++....-++|++.|++.|+.++...
T Consensus 351 ---DLgvelg~----~~v~~~qk~Ii~~~~~~gKpvivaT 383 (581)
T PLN02623 351 ---DLGAELPI----EEVPLLQEEIIRRCRSMGKPVIVAT 383 (581)
T ss_pred ---hhhhhcCc----HHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 23455553 5556788999999999999776544
No 98
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=24.29 E-value=2.2e+02 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~ 163 (474)
-+++..+.++..|++.+.+++.- ..+-+..++++|-+...+||-.+
T Consensus 94 i~~~~~~~~~dliv~G~~~~~~~--~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 94 IIEFAEEHNADLIVMGSRGRSGL--ERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHTTCSEEEEESSSTTST--TTSSSHHHHHHHHHHTSSEEEEE
T ss_pred hhhccccccceeEEEeccCCCCc--cCCCcCCHHHHHHHcCCCCEEEe
Confidence 46677788999888888886532 34668899999999999998765
No 99
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=24.27 E-value=1.1e+02 Score=29.58 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=22.4
Q ss_pred cchhHhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 011942 106 DDTRIRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (474)
Q Consensus 106 Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRP 136 (474)
+...+.+....|+.|.++ +. ||+++|||..
T Consensus 157 ~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e 187 (239)
T cd07381 157 NPLDLERIAADIAEAKKK-ADIVIVSLHWGVE 187 (239)
T ss_pred CccCHHHHHHHHHHHhhc-CCEEEEEecCccc
Confidence 334456677788888777 76 8899999964
No 100
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.96 E-value=2.4e+02 Score=29.82 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=25.9
Q ss_pred CCCeEEEecCCcc-cchHHHHHHHHHhcCeEEEchHHHHHHH
Q 011942 259 KRPFAAIVGGSKV-SSKIGVIESLLETCDILLLGGGMIFTFY 299 (474)
Q Consensus 259 ~rP~vaIlGGaKv-sdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (474)
+++.++|+||..- .|--.+++.+. ++|.+++-|.=+..+.
T Consensus 342 ~~~ii~I~g~~~~~~~~~~l~~~l~-~~~~v~~~G~~~~~l~ 382 (447)
T PRK02472 342 NQPVVLLAGGLDRGNEFDELVPYLK-NVKAMVVFGETAEKLA 382 (447)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHh-ccCEEEEECCCHHHHH
Confidence 4678999998642 23234555555 4999988776554443
No 101
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.92 E-value=2.7e+02 Score=25.59 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=48.3
Q ss_pred CCCcccccCh-hHHHHHHHHhcc--CCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchH---------
Q 011942 361 DGWMGLDIGP-DSVKTFNEALDT--TKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS--------- 428 (474)
Q Consensus 361 ~~~~~lDIGp-~Ti~~~~~~i~~--aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt--------- 428 (474)
.||..+|.|. .|.++|-+...+ ++.|-...=||--.. .-.++.+.+.+..-.+...++||+-.
T Consensus 28 ~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~-----~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~ 102 (134)
T TIGR01501 28 AGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEI-----DCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDV 102 (134)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHH-----HHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHH
Confidence 4677777787 455777776654 778888877764331 22345555554322234555666421
Q ss_pred HHHHHHcCCCCCceEEecchhhHHHhh
Q 011942 429 VAAVEKVGVAGVMSHISTGGGASLELL 455 (474)
Q Consensus 429 ~aAv~~~g~~d~~shiSTGGGA~Le~L 455 (474)
...++++|+ +.+..=+|.--..++||
T Consensus 103 ~~~l~~~Gv-~~vF~pgt~~~~iv~~l 128 (134)
T TIGR01501 103 EKRFKEMGF-DRVFAPGTPPEVVIADL 128 (134)
T ss_pred HHHHHHcCC-CEEECcCCCHHHHHHHH
Confidence 234788883 32322233334455554
No 102
>PTZ00066 pyruvate kinase; Provisional
Probab=23.91 E-value=1e+02 Score=34.55 Aligned_cols=207 Identities=16% Similarity=0.198 Sum_probs=106.9
Q ss_pred hHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHH-hCCceeeccCCCCHHHHHH-H-----hcCCCCcEE
Q 011942 114 VPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSEL-LGIQVVKADDCIGPEVEKL-V-----ASLPEGGVL 184 (474)
Q Consensus 114 lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~l-L~~~V~f~~d~ig~~v~~~-i-----~~l~~GeVl 184 (474)
..+|+.|++.|..| +=+||-.. +.....-...+..++. .+++|...-|.-||+.+-- + -.|+.|+.+
T Consensus 53 ~e~l~~mi~aGm~v~RlN~SHg~~----e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~~~~~~i~l~~G~~~ 128 (513)
T PTZ00066 53 VETLVKLIDAGMNICRFNFSHGDH----ESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFLKNHKPITLKEGQTL 128 (513)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeecccCCCCeEEeCCCCEE
Confidence 46899999999886 45677542 1112222223333444 4788888888888887621 1 125556665
Q ss_pred EEecccCccccc----cCcHHHHHHHhhcCCEEeeccccccccc--C-cccc-------------ccccccCcc--chhh
Q 011942 185 LLENVRFYKEEE----KNDPEFAKKLASLADLYVNDAFGTAHRA--H-ASTE-------------GVTKYLKPS--VAGF 242 (474)
Q Consensus 185 LLENlRF~~eE~----~nd~~fak~LA~l~DiyVNDAFgtaHR~--h-aS~v-------------Gi~~~l~~s--~aG~ 242 (474)
.|-.=.-+.+++ -+-++|.+.+...--||++|.-=...=. . -.+. |+. +|.. -.-.
T Consensus 129 ~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kgvn--lpg~~~~lp~ 206 (513)
T PTZ00066 129 KITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKNMN--LPGVKVELPV 206 (513)
T ss_pred EEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCcccc--cCCCccCCCC
Confidence 553210011111 1346788888888889998864332100 0 0000 111 0000 0112
Q ss_pred hHHHHHHHH-HhhhcCCCCCeEEE------------------ecC-----CcccchHHH--HHHHHHhcCeEEEchHHHH
Q 011942 243 LLQKELDYL-VGAVSSPKRPFAAI------------------VGG-----SKVSSKIGV--IESLLETCDILLLGGGMIF 296 (474)
Q Consensus 243 LmekEl~~L-~~~~~~p~rP~vaI------------------lGG-----aKvsdKI~v--i~~Ll~kvD~lliGG~ma~ 296 (474)
|=||..+.| .-.+++. =.|++. .|+ +|+.++-++ |+.+++-+|.|++.=|
T Consensus 207 ltekD~~dI~~f~~~~~-vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARG--- 282 (513)
T PTZ00066 207 IGEKDKNDILNFAIPMG-CDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARG--- 282 (513)
T ss_pred CCHHHHHHHHHHHHhcC-CCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEcc---
Confidence 345666554 2333222 123332 122 566665443 4555677999999211
Q ss_pred HHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccce
Q 011942 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSD 338 (474)
Q Consensus 297 tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD 338 (474)
..|.+++- ++.-..=|+|+++|++.|..++.-+-
T Consensus 283 ----DLGvEip~----e~vp~~QK~II~~c~~~gkPVIvATQ 316 (513)
T PTZ00066 283 ----DLGMEIPP----EKVFLAQKMMISKCNVAGKPVITATQ 316 (513)
T ss_pred ----ccccccCh----HHcchHHHHHHHHHHHhCCCEEEech
Confidence 12444432 22334457889999999887765443
No 103
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=23.82 E-value=94 Score=32.96 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.7
Q ss_pred eEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecc
Q 011942 287 ILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADK 344 (474)
Q Consensus 287 ~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~ 344 (474)
-++.||..||.+|+. .+-+.++++|.++++|---.|+|+
T Consensus 267 lvv~GGVAaN~~LR~-------------------~l~~~~~~~~~~~~~p~~~~ctDN 305 (345)
T PTZ00340 267 VLIVGGVGCNLRLQE-------------------MMQQMAKERGGKLFAMDERYCIDN 305 (345)
T ss_pred EEEcCCHHHHHHHHH-------------------HHHHHHHHcCCEEEeCChHhhhhh
Confidence 456677778888862 233456678899999987778765
No 104
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=23.77 E-value=88 Score=34.84 Aligned_cols=131 Identities=22% Similarity=0.345 Sum_probs=75.8
Q ss_pred CcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCC-CC--hhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCC
Q 011942 105 TDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPK-FS--LAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEG 181 (474)
Q Consensus 105 ~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~-~S--L~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~G 181 (474)
.+++|+-.+=.+.+.|.+.|.+|++=+.-|-.-+..|. |. =..+.+. .++++.+|.+- +.+...+.++.|++|
T Consensus 11 ~~E~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~v~~~diilk---V~~P~~~e~~~l~~g 86 (509)
T PRK09424 11 PGETRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDG-AAVWQSDIILK---VNAPSDDEIALLREG 86 (509)
T ss_pred CCCeEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecC-cccccCCEEEE---eCCCCHHHHHhcCCC
Confidence 34666666666899999999999999998865553332 21 0111111 12334444431 222233457889999
Q ss_pred cEEEEecccCccccccCcHHHHHHHh-hcCCEEeecccccccccCccccccccccCccchhhhHHHHH
Q 011942 182 GVLLLENVRFYKEEEKNDPEFAKKLA-SLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248 (474)
Q Consensus 182 eVlLLENlRF~~eE~~nd~~fak~LA-~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl 248 (474)
.+|+= . +|+ ..++++.+.|+ +-.-.|-.|...-.-|++ |+-.+... ...||+.---|-
T Consensus 87 ~~li~-~--l~p---~~~~~l~~~l~~~~it~ia~e~vpr~sraq-~~d~lssm--a~IAGy~Av~~a 145 (509)
T PRK09424 87 ATLVS-F--IWP---AQNPELLEKLAARGVTVLAMDAVPRISRAQ-SLDALSSM--ANIAGYRAVIEA 145 (509)
T ss_pred CEEEE-E--eCc---ccCHHHHHHHHHcCCEEEEeecccccccCC-Ccccccch--hhhhHHHHHHHH
Confidence 98742 1 333 23566777665 667888888887555655 44444431 357776544443
No 105
>PRK14104 chaperonin GroEL; Provisional
Probab=23.70 E-value=7.9e+02 Score=27.51 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=83.8
Q ss_pred hhhHHHHHHHh--CCceeeccCCCCHHHHHHHh--cCCCC-cEEEEecccCccccccCcHHHHHHHhhcCCEEee-----
Q 011942 146 APLVPRLSELL--GIQVVKADDCIGPEVEKLVA--SLPEG-GVLLLENVRFYKEEEKNDPEFAKKLASLADLYVN----- 215 (474)
Q Consensus 146 ~pva~~Ls~lL--~~~V~f~~d~ig~~v~~~i~--~l~~G-eVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVN----- 215 (474)
+.+.+.|+++. |+|+.++.+-|.+++...+. .++.| .|+.+...-|-.-...+-..++... .+.++.+
T Consensus 231 ~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~t--G~~~i~~~~~~~ 308 (546)
T PRK14104 231 NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILT--GGQAISEDLGIK 308 (546)
T ss_pred HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHh--CCEEEecCCCCC
Confidence 44444455443 78888888888888887654 55553 5788877766432222222232221 1233322
Q ss_pred ------cccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCC-----------------CCeEEEecCCc--
Q 011942 216 ------DAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPK-----------------RPFAAIVGGSK-- 270 (474)
Q Consensus 216 ------DAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~-----------------rP~vaIlGGaK-- 270 (474)
+-+|.+.+..-|-.-+. ++..+----.++..+++|.+-+++.. +-.+.++||+-
T Consensus 309 l~~~~~~~LG~a~~v~~~~~~~~-~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~ 387 (546)
T PRK14104 309 LENVTLQMLGRAKKVMIDKENTT-IVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV 387 (546)
T ss_pred cCcCCHHHCCceeEEEEcCCEEE-EEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 12455444332221111 12111112345555666666555543 33477789973
Q ss_pred --------ccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 271 --------VSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 271 --------vsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
+.|-+.++++.++. .++-|||.++.-+..
T Consensus 388 ~l~e~~r~i~Dal~a~~~ai~~--g~VpGGGa~e~~~s~ 424 (546)
T PRK14104 388 EVKERKDRVDDAMHATRAAVEE--GIVPGGGVALLRASE 424 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CcCcCchHHHHHHHH
Confidence 77788888888775 699999998776653
No 106
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.68 E-value=66 Score=32.84 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=32.4
Q ss_pred HHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCccccc
Q 011942 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEE 313 (474)
Q Consensus 249 ~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~ 313 (474)
+.|.++++..+.|++ |.||.|.+| -..|+.+-+-.+ +| |.|..+|+.....
T Consensus 182 ~~f~~vv~a~~vPVv-iaGG~k~~~-~~~L~~v~~ai~----aG--------a~Gv~~GRNIfQ~ 232 (264)
T PRK08227 182 EGFERITAGCPVPIV-IAGGKKLPE-RDALEMCYQAID----EG--------ASGVDMGRNIFQS 232 (264)
T ss_pred HHHHHHHHcCCCcEE-EeCCCCCCH-HHHHHHHHHHHH----cC--------Cceeeechhhhcc
Confidence 567778887778865 999999966 334433322211 33 4678888876554
No 107
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=23.64 E-value=78 Score=32.69 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHCCCe-EEEEecCC
Q 011942 112 AAVPTIKHLIQNGAK-VILSSHLG 134 (474)
Q Consensus 112 a~lpTIk~L~~~gaK-vVL~SHlG 134 (474)
+.-.+++.|.++|+. ||++||+|
T Consensus 195 ~~~~~v~~Lr~~gvD~II~LsH~g 218 (313)
T cd08162 195 QIQPSIDALTAQGINKIILLSHLQ 218 (313)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccc
Confidence 345678888889998 88999996
No 108
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=23.63 E-value=80 Score=31.74 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.3
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCCC
Q 011942 110 IRAAVPTIKHLIQNGAK-VILSSHLGRP 136 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaK-vVL~SHlGRP 136 (474)
+.+.-..++.|.++|+. ||+++|+|..
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~l~H~G~~ 195 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIALSHSGYE 195 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCch
Confidence 34455567777778988 7899999975
No 109
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=23.50 E-value=95 Score=35.73 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=53.0
Q ss_pred ccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHH---HHHHHhcCC
Q 011942 103 NITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPE---VEKLVASLP 179 (474)
Q Consensus 103 ~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~---v~~~i~~l~ 179 (474)
+|.|.+.+++.+.=-=.|+|-|.++|+.=-+- +.-.+.-.+--.++|++.||.||....-.-|+. ..+++-.+.
T Consensus 87 nVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~---D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 87 NVVDATNLERNLYLTLQLLELGIPMILALNMI---DEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELA 163 (653)
T ss_pred EEcccchHHHHHHHHHHHHHcCCCeEEEeccH---hhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 48899999999995556778999976654332 111234455667899999999999976655543 444454555
Q ss_pred CCcE
Q 011942 180 EGGV 183 (474)
Q Consensus 180 ~GeV 183 (474)
+++.
T Consensus 164 ~~~~ 167 (653)
T COG0370 164 ESKT 167 (653)
T ss_pred cccc
Confidence 5554
No 110
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.49 E-value=81 Score=31.10 Aligned_cols=50 Identities=36% Similarity=0.435 Sum_probs=34.8
Q ss_pred CCCCCCeEEEEeccCCCCCCC----C----cc-----CcchhHhhhhHHHHHHHHCCCeEEEEe
Q 011942 81 ADLKGKKVFVRADLNVPLDDN----Q----NI-----TDDTRIRAAVPTIKHLIQNGAKVILSS 131 (474)
Q Consensus 81 ~dl~gK~VlvRvD~NVPl~~~----g----~I-----~Dd~RI~a~lpTIk~L~~~gaKvVL~S 131 (474)
+.+.| +=|+--|+|.|+|.- + .| +...-+..+-.||++|....-|||+++
T Consensus 110 Fe~yg-~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 110 FELYG-TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred HHhcc-ceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEec
Confidence 45778 678899999999721 1 11 233455677778888887777888775
No 111
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=23.45 E-value=71 Score=29.98 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=45.2
Q ss_pred cCcchhHhhhhHHHHHHHHCCCeEEEEec-CCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH
Q 011942 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSH-LGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174 (474)
Q Consensus 104 I~Dd~RI~a~lpTIk~L~~~gaKvVL~SH-lGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~ 174 (474)
+.|.+++++.+-=...|++.|-.+|++-. ...- .+..+..-.+.|++.||.||..+.-.-|+.+++.
T Consensus 85 VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a----~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 85 VVDATNLERNLYLTLQLLELGIPVVVVLNKMDEA----ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHH----HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHH----HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence 56778888888878888888877555433 2211 1223444578999999999999877777666554
No 112
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.37 E-value=2.9e+02 Score=30.72 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCCCeEEEEeccCC-CCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 011942 82 DLKGKKVFVRADLNV-PLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (474)
Q Consensus 82 dl~gK~VlvRvD~NV-Pl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~S 131 (474)
||+||+|||-.==.. |+|+=--|++.+.=+--.---+.+..+||+|.|++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 699999998643322 44421123333332333444577888999999998
No 113
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.30 E-value=6.2e+02 Score=27.73 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=89.3
Q ss_pred CeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec-cCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHH
Q 011942 125 AKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA-DDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFA 203 (474)
Q Consensus 125 aKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~-~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fa 203 (474)
.++|++.- |.|.-...++.-+|.++.+ -|.+|.++ -|+....+.++.+...+ ..++.|+.. .+..++.
T Consensus 206 ~~ii~lvG---ptGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae-----~lgvpv~~~--~dp~dL~ 274 (407)
T PRK12726 206 HRIISLIG---QTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYAD-----KLDVELIVA--TSPAELE 274 (407)
T ss_pred CeEEEEEC---CCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhh-----cCCCCEEec--CCHHHHH
Confidence 44444433 3443234567777777644 37788886 46665444443333222 123444321 2333555
Q ss_pred HHHhh-----cCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHH
Q 011942 204 KKLAS-----LADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVI 278 (474)
Q Consensus 204 k~LA~-----l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi 278 (474)
+.|.. -+|+-+-|-=|..|+. ..+| .|+..+.+.+ .|.--++++-.|.+-.|-..++
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr~~~d----------------~~~l-~EL~~l~~~~-~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNYLA----------------EESV-SEISAYTDVV-HPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCccC----------------HHHH-HHHHHHhhcc-CCceEEEECCCcccHHHHHHHH
Confidence 54443 4799999988877643 1122 3555554433 2332233333567766766666
Q ss_pred HHHHH-hcCeEEEc-------hHHHHHHHHHcCCcc---------CCcccccCchHHHHHHHHH
Q 011942 279 ESLLE-TCDILLLG-------GGMIFTFYKAQGISV---------GSSLVEEDKLDLATTLLAK 325 (474)
Q Consensus 279 ~~Ll~-kvD~lliG-------G~ma~tFL~A~G~~i---------G~SlvE~~~~~~a~~il~~ 325 (474)
+..-. ..|.+|+. ||.++.+....|.+| ...+...+...+++.++..
T Consensus 337 ~~f~~l~i~glI~TKLDET~~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~~ 400 (407)
T PRK12726 337 PKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGT 400 (407)
T ss_pred HhcCcCCCCEEEEEcccCCCCccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhcc
Confidence 55332 26777763 555566666666544 2234444445666666543
No 114
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.81 E-value=1.1e+02 Score=25.14 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.2
Q ss_pred CCCCeEEEecC--C---cccchHHHHHHHHHh-cCeEEEch
Q 011942 258 PKRPFAAIVGG--S---KVSSKIGVIESLLET-CDILLLGG 292 (474)
Q Consensus 258 p~rP~vaIlGG--a---KvsdKI~vi~~Ll~k-vD~lliGG 292 (474)
+.++.++|+|. . |-.+....+..++.. +|.+++.|
T Consensus 39 ~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~ 79 (91)
T PF02875_consen 39 PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTG 79 (91)
T ss_dssp TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEET
T ss_pred cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcC
Confidence 58999999995 3 555666788888887 88888754
No 115
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=22.40 E-value=9e+02 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCeEEEecCCc----------ccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 260 RPFAAIVGGSK----------VSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 260 rP~vaIlGGaK----------vsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
+-...++||+- +.|-+.++++.++. .++-|||.++.-+..
T Consensus 374 ~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~--g~VpGGGa~e~~ls~ 423 (542)
T PRK12849 374 GVAVIKVGAATEVELKERKDRVEDALNATRAAVEE--GIVPGGGVALLRAAK 423 (542)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc--CeecCCCHHHHHHHH
Confidence 34567788865 67778888888875 699999998777653
No 116
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=22.37 E-value=1.1e+02 Score=32.56 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=33.0
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHH-hcCeEEEchH
Q 011942 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLE-TCDILLLGGG 293 (474)
Q Consensus 236 ~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~-kvD~lliGG~ 293 (474)
+|.++|-..-.+-..-.+.. +|--.++=.-..|-+...+++.+ -||-|++-||
T Consensus 56 ~p~~mG~~~~~~~~~~~~v~-----~~~~~~~~tTa~DT~~~~r~~~~~gVdlIvfaGG 109 (355)
T COG3199 56 PPGPMGESLAEASGFKYRVI-----RFQESTPRTTAEDTINAVRRMVERGVDLIVFAGG 109 (355)
T ss_pred CCcccchhHHHhhcCcceEE-----eecccCCCccHHHHHHHHHHHHhcCceEEEEeCC
Confidence 56677765544332222222 12222234557899999999999 5999999776
No 117
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.98 E-value=2.9e+02 Score=30.25 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHhc--cCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHH-cCCCCCceEEecchh
Q 011942 373 VKTFNEALD--TTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEK-VGVAGVMSHISTGGG 449 (474)
Q Consensus 373 i~~~~~~i~--~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~-~g~~d~~shiSTGGG 449 (474)
.+.+.+.|. +.+.|....- ........++++.+-+. ..++.+|+||.+....-+. +.....+++|..|-|
T Consensus 52 ~~~~~~~l~~~~pdvVgis~~------t~~~~~a~~~~~~~k~~-~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEG 124 (497)
T TIGR02026 52 DEKLVERLRAHCPDLVLITAI------TPAIYIACETLKFARER-LPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEG 124 (497)
T ss_pred HHHHHHHHHhcCcCEEEEecC------cccHHHHHHHHHHHHHH-CCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCc
Confidence 345555553 5688877542 12334566777766554 2468999999985443333 222356899999998
No 118
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=21.86 E-value=90 Score=30.85 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=36.8
Q ss_pred ccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHH
Q 011942 221 AHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGM 294 (474)
Q Consensus 221 aHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~m 294 (474)
.||.|+=+.-|+.+++ +-++..=+ .++=|...+++....+..+++++|.+++|-||
T Consensus 4 ~~~~~~~~~~~~~~~~----~~~~a~~~--------------~~~g~~~~~~~~~e~~~~~l~~~d~vvi~~G~ 59 (242)
T cd01170 4 LREKKPLVHCITNYVV----MNFVANVL--------------LAIGASPIMSDAPEEVEELAKIAGALVINIGT 59 (242)
T ss_pred hhhCCCeEEEccchhh----HhHHHHHH--------------HHhCCchhhcCCHHHHHHHHHHcCcEEEeCCC
Confidence 5788888888887663 22222211 23334444667788888999999999997544
No 119
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.72 E-value=3.7e+02 Score=28.23 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=53.4
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe--EEEEecCCCCCC-----CCCCCChhhhHHHHHH
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK--VILSSHLGRPKG-----VTPKFSLAPLVPRLSE 154 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK--vVL~SHlGRPkg-----~~~~~SL~pva~~Ls~ 154 (474)
+++||.|++--++.-|.++ .|-+-+=.+..|.+.||| .+++|.++--.. ..+-.|.+-+|+.|+.
T Consensus 53 ~vrg~dV~ivqs~~~p~nd--------~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~ 124 (332)
T PRK00553 53 SVRNKDVVIFQSTCSPVND--------SLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTK 124 (332)
T ss_pred CCCCCEEEEEcCCCCCCch--------HHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHh
Confidence 5789999998887767542 578888899999999998 478888764432 1234677777777765
Q ss_pred HhCCceeeccCCCCHHH
Q 011942 155 LLGIQVVKADDCIGPEV 171 (474)
Q Consensus 155 lL~~~V~f~~d~ig~~v 171 (474)
. |.+-...-|.-.+.+
T Consensus 125 ~-g~d~vit~DlH~~~i 140 (332)
T PRK00553 125 A-GVTRVTLTDIHSDQT 140 (332)
T ss_pred c-CCCEEEEEeCChHHH
Confidence 3 333222234444433
No 120
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=21.67 E-value=1e+02 Score=28.84 Aligned_cols=139 Identities=25% Similarity=0.400 Sum_probs=72.0
Q ss_pred CcccchHHHHHHHH--HhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccC
Q 011942 269 SKVSSKIGVIESLL--ETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFA 346 (474)
Q Consensus 269 aKvsdKI~vi~~Ll--~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~ 346 (474)
+..++-+..++.++ +.+|.||..|+.|...=+.. +++=--++-...+.. +.+.+|++++-+| .++.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~--~iPVV~I~~s~~Dil-~al~~a~~~~~~I-----avv~---- 84 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAELLRKHV--SIPVVEIPISGFDIL-RALAKAKKYGPKI-----AVVG---- 84 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC---SS-EEEE---HHHHH-HHHHHCCCCTSEE-----EEEE----
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhC--CCCEEEECCCHhHHH-HHHHHHHhcCCcE-----EEEe----
Confidence 34777888888884 46999999999877664322 222112333334443 3445566655444 2222
Q ss_pred CCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecc
Q 011942 347 PDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGG 426 (474)
Q Consensus 347 ~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGG 426 (474)
..++..+ ...+.+++. -+..+.. ... ..++-..+.+....|+..||||+
T Consensus 85 ---------~~~~~~~----------~~~~~~ll~-~~i~~~~-------~~~----~~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 85 ---------YPNIIPG----------LESIEELLG-VDIKIYP-------YDS----EEEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp ---------ESS-SCC----------HHHHHHHHT--EEEEEE-------ESS----HHHHHHHHHHHHHTT--EEEESH
T ss_pred ---------cccccHH----------HHHHHHHhC-CceEEEE-------ECC----HHHHHHHHHHHHHcCCcEEECCH
Confidence 1111111 556666663 2332221 111 34555666665556899999999
Q ss_pred hHHHHHHHcCCCCCceEEecchhhHH
Q 011942 427 DSVAAVEKVGVAGVMSHISTGGGASL 452 (474)
Q Consensus 427 Dt~aAv~~~g~~d~~shiSTGGGA~L 452 (474)
-++..++++|+.- -++-+|--+..
T Consensus 134 ~~~~~A~~~gl~~--v~i~sg~esi~ 157 (176)
T PF06506_consen 134 VVCRLARKLGLPG--VLIESGEESIR 157 (176)
T ss_dssp HHHHHHHHTTSEE--EESS--HHHHH
T ss_pred HHHHHHHHcCCcE--EEEEecHHHHH
Confidence 9999999999752 34444443333
No 121
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=21.49 E-value=2e+02 Score=29.03 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhCCCeEEccceEE
Q 011942 316 LDLATTLLAKAKAKGVNLLLPSDVV 340 (474)
Q Consensus 316 ~~~a~~il~~a~~~g~kIilPvD~v 340 (474)
+..++++++.++++|+++++|..++
T Consensus 102 l~~~~~L~~~A~~~g~~l~v~sGa~ 126 (271)
T PRK13302 102 LLRNEDLIDLARQNGGQIIVPTGAL 126 (271)
T ss_pred HHhHHHHHHHHHHcCCEEEEcchHH
Confidence 4467999999999999999998776
No 122
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=21.45 E-value=3.4e+02 Score=25.64 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=60.5
Q ss_pred eEEEEeccCCCCCC-CCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeecc
Q 011942 87 KVFVRADLNVPLDD-NQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKAD 164 (474)
Q Consensus 87 ~VlvRvD~NVPl~~-~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~ 164 (474)
||+|...++-|-.. .+..|+..=+++. |++|.++|++ |++.-+-+-+ -.+..+.+ +..|..
T Consensus 1 ~V~IKpN~~~~~~~~~~~~T~P~vv~av---v~~l~~~g~~~i~i~e~~~~~--------~~~~~~~~-~~~G~~----- 63 (206)
T PF04015_consen 1 RVLIKPNFVNPGPPESGATTHPEVVRAV---VEMLKEAGAKEIIIAESPGSG--------AADTREVF-KRSGYE----- 63 (206)
T ss_pred CEEEEeCCCCCCCCCCCccCCHHHHHHH---HHHHHHcCCCceEEEeCCCcc--------hHhHHHHH-HHcchh-----
Confidence 68899999888763 3567777766664 4666678888 7776655532 01111111 112210
Q ss_pred CCCCHHHHHHHhcCCCCcEEEEecccCcccccc-----CcHHHHHHHhhcCCEEeecccc
Q 011942 165 DCIGPEVEKLVASLPEGGVLLLENVRFYKEEEK-----NDPEFAKKLASLADLYVNDAFG 219 (474)
Q Consensus 165 d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~-----nd~~fak~LA~l~DiyVNDAFg 219 (474)
+ .+ .-...+++-+++.+++..... ..-.+.+.+.. +|++||=+==
T Consensus 64 ~----~~-----~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~e-aD~iInvp~l 113 (206)
T PF04015_consen 64 E----IA-----EEYGAELVDLDDEPWVEVPLPGGEHLKEFKVPRILLE-ADVIINVPKL 113 (206)
T ss_pred h----HH-----HhcCCcEEEccCCcccceeccCCeeeeeEEhhHHHHh-CCEEEEecCc
Confidence 0 00 011236666777776665543 12358888888 8999984433
No 123
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=21.22 E-value=1.9e+02 Score=28.18 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=29.5
Q ss_pred hHhhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceee
Q 011942 109 RIRAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK 162 (474)
Q Consensus 109 RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f 162 (474)
.+.+....|++|.+ ++. ||+++|||......+.-....+|+.|-+ -|.++.+
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~-~G~DvIi 210 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEPTDEQRELAHALID-AGADVVI 210 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCCCHHHHHHHHHHHH-cCCCEEE
Confidence 35566667777765 476 7899999975321121122344544433 2555555
No 124
>PRK14558 pyrH uridylate kinase; Provisional
Probab=21.20 E-value=1.9e+02 Score=28.25 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=34.9
Q ss_pred CeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCC
Q 011942 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (474)
Q Consensus 86 K~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlG 134 (474)
||++|.+=-++=-++++.-.|..+|+.....|+.+.++|-+|||++==|
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgG 49 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAG 49 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECcc
Confidence 4566665444433433345788999999999999999999988875334
No 125
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.18 E-value=64 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=23.9
Q ss_pred CcccccChhHHHHHHHHh---------------------ccCCeEEEeCccccc
Q 011942 363 WMGLDIGPDSVKTFNEAL---------------------DTTKTVIWNGPMGVF 395 (474)
Q Consensus 363 ~~~lDIGp~Ti~~~~~~i---------------------~~aktI~WNGPmGvf 395 (474)
-.|+||-|+.+|.|+.-. ...+|.+||=|.|--
T Consensus 74 vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 74 VLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGTK 127 (185)
T ss_pred EEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCcc
Confidence 347899998888876422 234799999999863
No 126
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.09 E-value=88 Score=33.34 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHhhhcCC---CCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC---chHHHHH
Q 011942 248 LDYLVGAVSSP---KRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEED---KLDLATT 321 (474)
Q Consensus 248 l~~L~~~~~~p---~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~---~~~~a~~ 321 (474)
.+-+..++... ++| |.|.||.|.+| -.+++.+-+-+=+ +=+| |.|.-+|+...... .+++.+.
T Consensus 267 ~~~~~~~V~ac~ag~vp-VviAGG~k~~~-~e~L~~v~~a~~~-i~aG--------a~Gv~iGRNIfQ~~~~ea~~~~~~ 335 (348)
T PRK09250 267 IDLVRYQVANCYMGRRG-LINSGGASKGE-DDLLDAVRTAVIN-KRAG--------GMGLIIGRKAFQRPMAEGVKLLNA 335 (348)
T ss_pred HHHHHHHHHhhccCCce-EEEeCCCCCCH-HHHHHHHHHHHHh-hhcC--------CcchhhchhhhcCCcHHHHHHHHH
Confidence 34445556654 555 78999999854 3334333222000 2244 46788898877654 3667777
Q ss_pred HHHHHhhCC
Q 011942 322 LLAKAKAKG 330 (474)
Q Consensus 322 il~~a~~~g 330 (474)
|.+...+..
T Consensus 336 i~~i~~~~~ 344 (348)
T PRK09250 336 IQDVYLDKK 344 (348)
T ss_pred HHHHhcCCC
Confidence 776665543
No 127
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=20.90 E-value=1.4e+02 Score=28.90 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=34.3
Q ss_pred ccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEE
Q 011942 223 RAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILL 289 (474)
Q Consensus 223 R~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~ll 289 (474)
+.|=.++|... .+ -+..+.+.+.+ ++|++.|+||-|+.. .+.+.||..+
T Consensus 79 vvhLtmyga~~--~~---------~~~~ir~~~~~-~~p~LIvvGg~gvp~------evye~aDynl 127 (176)
T PRK03958 79 VVHLTMYGENI--QD---------VEPEIREAHRK-GEPLLIVVGAEKVPR------EVYELADWNV 127 (176)
T ss_pred EEEEEEecCCc--cc---------hHHHHHHhhcc-CCcEEEEEcCCCCCH------HHHhhCCEEe
Confidence 35566677664 22 22334444555 899999999999885 5788999988
No 128
>CHL00093 groEL chaperonin GroEL
Probab=20.72 E-value=5.3e+02 Score=28.67 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCeE-EEecCC----------cccchHHHHHHHHHhcCeEEEchHHHHHHHHH
Q 011942 259 KRPFA-AIVGGS----------KVSSKIGVIESLLETCDILLLGGGMIFTFYKA 301 (474)
Q Consensus 259 ~rP~v-aIlGGa----------KvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A 301 (474)
..+.. .++||+ .+.|-+.+++++++. .++-|||.+..-+..
T Consensus 372 ~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~--gvVpGGGa~e~~~s~ 423 (529)
T CHL00093 372 SGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE--GIVPGGGATLVHLSE 423 (529)
T ss_pred cCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc--CcccCCcHHHHHHHH
Confidence 33455 568883 488899999999885 799999998777653
No 129
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.68 E-value=2.8e+02 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=17.8
Q ss_pred chhHhhhhHHHHHHHHC-CCeEEEEecC
Q 011942 107 DTRIRAAVPTIKHLIQN-GAKVILSSHL 133 (474)
Q Consensus 107 d~RI~a~lpTIk~L~~~-gaKvVL~SHl 133 (474)
+..++.....|+++.++ |.+|+++||+
T Consensus 187 ~~~~~~l~~~l~~l~~~~g~~v~~i~~~ 214 (298)
T TIGR03609 187 VSRLLRLLRALDRLQRDTGAFVLFLPFQ 214 (298)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 44556666667777666 7777777775
No 130
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=20.66 E-value=2.1e+02 Score=27.47 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=9.4
Q ss_pred CCCeEEEecCCcccch
Q 011942 259 KRPFAAIVGGSKVSSK 274 (474)
Q Consensus 259 ~rP~vaIlGGaKvsdK 274 (474)
.++.+.|.||..--++
T Consensus 29 ~~~~viV~ggg~~~~~ 44 (248)
T cd02115 29 GGRVVVVHGAGPQITD 44 (248)
T ss_pred CCCEEEEECCCCCcCH
Confidence 4566777776554433
No 131
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=20.61 E-value=1.3e+02 Score=33.39 Aligned_cols=304 Identities=20% Similarity=0.234 Sum_probs=163.6
Q ss_pred hhHHHHHHHHCCCeEE--EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEec--
Q 011942 113 AVPTIKHLIQNGAKVI--LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN-- 188 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV--L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLEN-- 188 (474)
+-+.|+.|+++|..|+ =+||-.. ++--..-...+..++.+|++|...-|.-||+.+ +..+++|.+-|-..
T Consensus 19 s~e~l~~li~aG~nV~RlNfSHG~~----e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR--~g~~~~~~~~l~~G~~ 92 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRLNFSHGDH----EEHKKRIDNVREAAEKLGRPVAILLDLKGPKIR--TGKFKGGAVELEKGEK 92 (477)
T ss_pred CHHHHHHHHHccCcEEEEecCCCCh----HHHHHHHHHHHHHHHHhCCceEEEEcCCCCcce--eEecCCCcEEeecCCE
Confidence 5689999999999985 5677442 222334455677788899999999999999876 33444432221111
Q ss_pred ccCccccc----------cCcHHHHHHHhhcCCEEeecccccc----------c-c-----cCccccccccccCcc--ch
Q 011942 189 VRFYKEEE----------KNDPEFAKKLASLADLYVNDAFGTA----------H-R-----AHASTEGVTKYLKPS--VA 240 (474)
Q Consensus 189 lRF~~eE~----------~nd~~fak~LA~l~DiyVNDAFgta----------H-R-----~haS~vGi~~~l~~s--~a 240 (474)
++|...+. .+.+.|.+.+.+--.|++.|..=.. + | .-.|--|++- |-. -.
T Consensus 93 ~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~KgvN~--pg~~l~~ 170 (477)
T COG0469 93 FTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKGVNL--PGVDLSL 170 (477)
T ss_pred EEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCceec--CCCCCCC
Confidence 22222222 2345789999999999999864211 0 0 1112223331 111 23
Q ss_pred hhhHHHHHHHHHhhhcCCCCCeEEEe------------------cCC--cccchH------HHHHHHHHhcCeEEEchHH
Q 011942 241 GFLLQKELDYLVGAVSSPKRPFAAIV------------------GGS--KVSSKI------GVIESLLETCDILLLGGGM 294 (474)
Q Consensus 241 G~LmekEl~~L~~~~~~p~rP~vaIl------------------GGa--KvsdKI------~vi~~Ll~kvD~lliGG~m 294 (474)
+.|=||..+.|.-.++. .=.|+|+- ||. +|=.|| .=|+.+++..|.|.+.=|
T Consensus 171 palteKD~~dl~f~~~~-gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~SDGIMVARG- 248 (477)
T COG0469 171 PALTEKDKEDLKFGLEQ-GVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARG- 248 (477)
T ss_pred CCCCccCHHHHHHHHhc-CCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhcCceEEEec-
Confidence 44555555555444433 33344431 442 343443 235555777999988211
Q ss_pred HHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEe--CCCCCCCC-cccccC--
Q 011942 295 IFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVP--ATAIPDGW-MGLDIG-- 369 (474)
Q Consensus 295 a~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~--~~~Ip~~~-~~lDIG-- 369 (474)
-.|.+||- ++..-.=|+|+++|++.|..++.-+-..-+=...+-..|-+++ .+.|-+|. -.|.-|
T Consensus 249 ------DLGVEip~----e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ET 318 (477)
T COG0469 249 ------DLGVEIPL----EEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGET 318 (477)
T ss_pred ------ccccccCH----HHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhh
Confidence 13566663 2333444778899999888765444332100001111222221 11121221 111111
Q ss_pred ------hhHHHHHHHHhccCCeEE-EeCcccccCccCchHHHHHHHHHHHhhcCC-CcE---EEEecchHHHHHHHcC
Q 011942 370 ------PDSVKTFNEALDTTKTVI-WNGPMGVFEFDKFAVGTEAIAKKLADLSGK-GVT---TIIGGGDSVAAVEKVG 436 (474)
Q Consensus 370 ------p~Ti~~~~~~i~~aktI~-WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~-ga~---sIvGGGDt~aAv~~~g 436 (474)
-++++...++..++..-+ ||.=+-.....++...|.+|+.+..+.... .+. +.---|.|+-.+.++.
T Consensus 319 A~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~R 396 (477)
T COG0469 319 AAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYR 396 (477)
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCC
Confidence 367788888888886655 455455556677788888998887765431 111 2223456666665553
No 132
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.58 E-value=1e+02 Score=30.45 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=31.6
Q ss_pred CccCcchh-H-hhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHH
Q 011942 102 QNITDDTR-I-RAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRL 152 (474)
Q Consensus 102 g~I~Dd~R-I-~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~L 152 (474)
|.++|+.+ + .....+|+.|.++|.+++++| |||- .++.++++.|
T Consensus 16 GTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaT--GR~~-----~~i~~~~~~l 61 (271)
T PRK03669 16 GTLLDSHTYDWQPAAPWLTRLREAQVPVILCS--SKTA-----AEMLPLQQTL 61 (271)
T ss_pred cCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEc--CCCH-----HHHHHHHHHh
Confidence 66666544 4 567889999999999999998 7762 3455555444
No 133
>PRK08114 cystathionine beta-lyase; Provisional
Probab=20.35 E-value=5.3e+02 Score=27.66 Aligned_cols=106 Identities=18% Similarity=0.306 Sum_probs=62.6
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCcccc
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEE 195 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE 195 (474)
++.-|++.|-+||+..+. + -++.-+.+.+-+..|.+|.+++-.-.+.++++++. +-.++.+|..-.--.+
T Consensus 93 ~~~~ll~~GD~Vv~~~~~-----Y---g~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~--~TrlV~~EtpsNp~~~ 162 (395)
T PRK08114 93 AILAFVEQGDHVLMTGTA-----Y---EPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQP--NTKVVFLESPGSITME 162 (395)
T ss_pred HHHHHcCCCCEEEEeCCC-----c---HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCC--CceEEEEECCCCCCCE
Confidence 355567778776654221 1 12222233333447999999875545666666542 3468888877655555
Q ss_pred ccCcHHHHHHHhhc---CCEEeecccccccccCcccccc
Q 011942 196 EKNDPEFAKKLASL---ADLYVNDAFGTAHRAHASTEGV 231 (474)
Q Consensus 196 ~~nd~~fak~LA~l---~DiyVNDAFgtaHR~haS~vGi 231 (474)
..+=+++++..-+. +-++|-..|++.+-.++.-.|.
T Consensus 163 v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~Ga 201 (395)
T PRK08114 163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGI 201 (395)
T ss_pred eecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCC
Confidence 55545555555554 5577777888877655554443
No 134
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=20.12 E-value=1.3e+02 Score=33.33 Aligned_cols=301 Identities=22% Similarity=0.241 Sum_probs=152.5
Q ss_pred hHHHHHHHHCCCeE--EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHH-H-----hcCCCCcEEE
Q 011942 114 VPTIKHLIQNGAKV--ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL-V-----ASLPEGGVLL 185 (474)
Q Consensus 114 lpTIk~L~~~gaKv--VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~-i-----~~l~~GeVlL 185 (474)
..+|+.|++.|..| +=+||-.. ++...+-...+.+++.+|++|...-|.-||+.+-- + -.|+.||.+.
T Consensus 17 ~e~l~~li~aG~~v~RiN~sHg~~----~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~~~i~l~~G~~~~ 92 (480)
T cd00288 17 VENLKKLIKAGMNVARMNFSHGSH----EYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGGKDISLKAGDKFL 92 (480)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCH----HHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCCCceecCCCCEEE
Confidence 35888888888886 34677542 12223334445667777888888778888876511 1 1256666655
Q ss_pred Eeccc-Cccccc----cCcHHHHHHHhhcCCEEeeccccccc--ccCcc--c-------------cccccccCcc--chh
Q 011942 186 LENVR-FYKEEE----KNDPEFAKKLASLADLYVNDAFGTAH--RAHAS--T-------------EGVTKYLKPS--VAG 241 (474)
Q Consensus 186 LENlR-F~~eE~----~nd~~fak~LA~l~DiyVNDAFgtaH--R~haS--~-------------vGi~~~l~~s--~aG 241 (474)
|-.-. -..+++ -+-++|.+.+.+.-.||++|..=... +.+.. + -|+. +|.. -.-
T Consensus 93 lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kgin--~p~~~~~~p 170 (480)
T cd00288 93 VTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGVN--LPGTDVDLP 170 (480)
T ss_pred EEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCceE--eeCcccCCC
Confidence 53111 001111 13467888888888888888632221 00111 1 1221 1000 112
Q ss_pred hhHHHHHHHHHhhhcCCCCCeEEEe-----------------cC------CcccchHHH--HHHHHHhcCeEEEchHHHH
Q 011942 242 FLLQKELDYLVGAVSSPKRPFAAIV-----------------GG------SKVSSKIGV--IESLLETCDILLLGGGMIF 296 (474)
Q Consensus 242 ~LmekEl~~L~~~~~~p~rP~vaIl-----------------GG------aKvsdKI~v--i~~Ll~kvD~lliGG~ma~ 296 (474)
.|=||.++.|.-++++. =-|+++- .| +||.++-.+ |+.+++.+|.|++|=+
T Consensus 171 ~ltekD~~di~f~~~~~-vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIarg--- 246 (480)
T cd00288 171 ALSEKDKADLRFGVEQG-VDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARG--- 246 (480)
T ss_pred CCCHHHHHHHHHHHHcC-CCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcc---
Confidence 23466666555444331 1222221 01 466665443 4555667999999743
Q ss_pred HHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEeccc--CCCCCeeEEe--CCCCCCCCcc--c----
Q 011942 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKF--APDANSKVVP--ATAIPDGWMG--L---- 366 (474)
Q Consensus 297 tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~--~~~~~~~~v~--~~~Ip~~~~~--l---- 366 (474)
-.|.++| -++....-++|++.|+++|+.++.-+-.. +.. .+--.|-+++ .+.+-+|.-+ |
T Consensus 247 ----DLg~e~g----~~~v~~~qk~ii~~~~~~gkpvi~ATqmL--eSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ET 316 (480)
T cd00288 247 ----DLGVEIP----AEEVFLAQKMLIAKCNLAGKPVITATQML--ESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGET 316 (480)
T ss_pred ----hhhhhcC----hHHHHHHHHHHHHHHHHcCCCEEEEchhH--HHHhhCCCCCchhhHHHHHHHHhCCcEEEEechh
Confidence 2455555 35667788999999999998776544332 111 0111111111 1112222211 1
Q ss_pred ccC---hhHHHHHHHHhccCCeEEEe-----CcccccCccCchHHHHHHHHHHHhhcC-CCcEEEE---ecchHHHHHHH
Q 011942 367 DIG---PDSVKTFNEALDTTKTVIWN-----GPMGVFEFDKFAVGTEAIAKKLADLSG-KGVTTII---GGGDSVAAVEK 434 (474)
Q Consensus 367 DIG---p~Ti~~~~~~i~~aktI~WN-----GPmGvfE~~~Fa~GT~~i~~aia~~~~-~ga~sIv---GGGDt~aAv~~ 434 (474)
-+| -++++...+++.++...+++ .... ..+....-|.+++++..+... -++..|| =-|.|+..+.+
T Consensus 317 a~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~ 394 (480)
T cd00288 317 AKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRR--LTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSK 394 (480)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhc--ccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHh
Confidence 223 26777888888877764432 1110 000111246777777665432 1333333 45677777766
Q ss_pred cC
Q 011942 435 VG 436 (474)
Q Consensus 435 ~g 436 (474)
+-
T Consensus 395 ~R 396 (480)
T cd00288 395 YR 396 (480)
T ss_pred hC
Confidence 53
No 135
>PRK13774 formimidoylglutamase; Provisional
Probab=20.09 E-value=2.4e+02 Score=29.03 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=42.9
Q ss_pred CCcccccChhHHHHHHHHhcc---CCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcE-EEEecchHHH
Q 011942 362 GWMGLDIGPDSVKTFNEALDT---TKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVT-TIIGGGDSVA 430 (474)
Q Consensus 362 ~~~~lDIGp~Ti~~~~~~i~~---aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~-sIvGGGDt~a 430 (474)
+..+.--||+.+..-...+.. ...|++-|..=+ .......=.++|.+.+.+.-++|.+ .++||+||++
T Consensus 62 ~r~G~~~gP~aIR~as~~l~~~~~~~~i~D~Gdv~~-~~~~~~~~~~~i~~~v~~i~~~g~~pivlGGdHsit 133 (311)
T PRK13774 62 GRIGAKEGPDAIKQAFAGLPDLNQCETLVDYGNVYH-DHEELIDTQKEFAMLAAKSIANHRQTFLLGGGHDIA 133 (311)
T ss_pred CCcCHhHhHHHHHHHhhcCCcccccCeEEECCCCCC-CccHHHHHHHHHHHHHHHHHHCCCeEEEEcCchHHH
Confidence 445778999999987665542 226888887632 1112344456677777665555655 6677887765
No 136
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=20.02 E-value=1e+02 Score=31.14 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=18.8
Q ss_pred HhhhhHHHHHHHHCCCe-EEEEecCCC
Q 011942 110 IRAAVPTIKHLIQNGAK-VILSSHLGR 135 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaK-vVL~SHlGR 135 (474)
++++-..++.|.++|+. ||+++|+|-
T Consensus 159 ~~~~~~~v~~lk~~~~D~VI~lsH~G~ 185 (285)
T cd07405 159 IHEAKEVVPELKQEKPDIVIAATHMGH 185 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccc
Confidence 34444556677767888 889999995
Done!