Query 011942
Match_columns 474
No_of_seqs 166 out of 1082
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vpe_A Phosphoglycerate kinase 100.0 1E-153 3E-158 1180.9 41.3 391 77-469 4-396 (398)
2 1php_A 3-phosphoglycerate kina 100.0 1E-153 3E-158 1179.6 40.3 388 77-468 5-393 (394)
3 3q3v_A Phosphoglycerate kinase 100.0 5E-153 2E-157 1176.2 42.4 391 75-469 7-400 (403)
4 1v6s_A Phosphoglycerate kinase 100.0 5E-153 2E-157 1172.9 40.3 388 76-468 2-390 (390)
5 16pk_A PGK, 3-phosphoglycerate 100.0 2E-152 7E-157 1175.1 40.4 389 77-468 4-414 (415)
6 1qpg_A PGK, 3-phosphoglycerate 100.0 5E-152 2E-156 1173.0 38.3 391 76-469 6-414 (415)
7 3oz7_A Phosphoglycerate kinase 100.0 1E-151 3E-156 1171.5 37.3 391 75-468 7-417 (417)
8 4fey_A Phosphoglycerate kinase 100.0 1E-151 5E-156 1162.8 37.0 386 74-469 5-392 (395)
9 2wzb_A Phosphoglycerate kinase 100.0 1E-151 4E-156 1171.0 34.5 390 76-468 6-415 (416)
10 1zmr_A Phosphoglycerate kinase 100.0 6E-150 2E-154 1148.2 35.0 378 77-470 5-385 (387)
11 2cun_A Phosphoglycerate kinase 100.0 1E-147 4E-152 1139.1 34.4 379 76-469 2-401 (410)
12 1fw8_A PGK P72, phosphoglycera 100.0 2E-124 7E-129 967.8 32.0 329 141-471 2-346 (416)
13 1fw8_A PGK P72, phosphoglycera 99.8 5.3E-21 1.8E-25 198.1 8.4 64 75-139 350-414 (416)
14 3tqq_A Methionyl-tRNA formyltr 73.6 11 0.00039 37.4 8.9 82 113-195 14-96 (314)
15 1fmt_A Methionyl-tRNA FMet for 67.5 18 0.0006 36.0 8.7 82 113-195 15-97 (314)
16 3q0i_A Methionyl-tRNA formyltr 67.4 15 0.00051 36.6 8.2 83 112-195 18-101 (318)
17 3rfo_A Methionyl-tRNA formyltr 67.4 11 0.00036 37.7 7.1 82 113-195 16-98 (317)
18 2bln_A Protein YFBG; transfera 62.0 26 0.00088 34.6 8.7 79 113-195 12-91 (305)
19 3nav_A Tryptophan synthase alp 58.5 47 0.0016 32.4 9.7 163 108-300 79-246 (271)
20 2ekc_A AQ_1548, tryptophan syn 50.9 63 0.0022 30.8 9.2 180 109-328 77-258 (262)
21 1xpj_A Hypothetical protein; s 45.0 20 0.00068 30.1 4.1 25 111-137 27-51 (126)
22 3vnd_A TSA, tryptophan synthas 45.0 1.1E+02 0.0038 29.6 9.9 160 108-299 77-243 (267)
23 2zos_A MPGP, mannosyl-3-phosph 35.7 23 0.00077 32.7 3.2 33 102-136 11-43 (249)
24 1vjr_A 4-nitrophenylphosphatas 34.7 27 0.00091 31.9 3.5 35 102-136 26-62 (271)
25 3kwp_A Predicted methyltransfe 33.7 1.5E+02 0.005 29.0 8.8 71 112-186 76-146 (296)
26 3cvo_A Methyltransferase-like 33.4 32 0.0011 32.1 3.8 62 133-194 95-160 (202)
27 2rbk_A Putative uncharacterize 33.3 34 0.0012 31.4 4.0 34 101-136 10-46 (261)
28 3umf_A Adenylate kinase; rossm 32.9 19 0.00064 33.8 2.1 51 368-429 14-64 (217)
29 1z7e_A Protein aRNA; rossmann 32.1 1E+02 0.0034 32.9 7.9 79 113-195 12-91 (660)
30 3ek6_A Uridylate kinase; UMPK 31.5 74 0.0025 30.0 6.1 52 84-135 8-59 (243)
31 3l49_A ABC sugar (ribose) tran 31.0 3E+02 0.01 24.8 16.7 50 244-293 20-70 (291)
32 1xvi_A MPGP, YEDP, putative ma 30.3 31 0.001 32.4 3.2 33 102-136 18-52 (275)
33 2pju_A Propionate catabolism o 30.0 35 0.0012 32.3 3.5 36 406-441 142-177 (225)
34 2obb_A Hypothetical protein; s 29.7 30 0.001 30.5 2.8 25 110-136 26-50 (142)
35 3h35_A Uncharacterized protein 29.1 20 0.00069 33.3 1.6 67 186-267 11-78 (185)
36 1apy_A Aspartylglucosaminidase 29.1 1.8E+02 0.0062 26.4 8.0 69 258-331 72-140 (162)
37 1hg3_A Triosephosphate isomera 28.8 1.2E+02 0.0041 28.7 7.0 64 116-189 80-146 (225)
38 3dao_A Putative phosphatse; st 27.9 45 0.0015 31.1 3.9 33 102-136 30-65 (283)
39 1jy2_P Fibrinogen gamma-B chai 27.6 19 0.00065 26.8 0.9 36 215-255 12-47 (48)
40 3nwy_A Uridylate kinase; allos 27.1 1E+02 0.0035 30.1 6.4 50 84-134 49-98 (281)
41 3pdw_A Uncharacterized hydrola 27.1 54 0.0019 29.8 4.2 49 102-159 15-65 (266)
42 3r4c_A Hydrolase, haloacid deh 26.3 48 0.0017 30.1 3.7 34 102-137 21-57 (268)
43 3l8h_A Putative haloacid dehal 25.6 79 0.0027 26.8 4.8 26 110-135 29-54 (179)
44 1u02_A Trehalose-6-phosphate p 25.4 38 0.0013 31.1 2.8 25 109-136 23-48 (239)
45 4a7w_A Uridylate kinase; trans 24.8 1.1E+02 0.0038 28.7 6.0 51 84-134 6-56 (240)
46 3hbm_A UDP-sugar hydrolase; PS 23.7 1.9E+02 0.0065 27.9 7.6 148 87-273 2-171 (282)
47 1rkq_A Hypothetical protein YI 23.4 62 0.0021 30.2 3.9 24 111-136 25-48 (282)
48 3gve_A YFKN protein; alpha-bet 23.3 1.3E+02 0.0045 29.7 6.5 52 111-163 194-247 (341)
49 3gg2_A Sugar dehydrogenase, UD 22.6 88 0.003 32.2 5.2 42 82-129 315-356 (450)
50 2z08_A Universal stress protei 22.4 1.6E+02 0.0054 23.8 5.8 45 117-163 92-136 (137)
51 1o6d_A Hypothetical UPF0247 pr 22.2 59 0.002 29.6 3.3 48 170-221 54-108 (163)
52 3vtf_A UDP-glucose 6-dehydroge 22.0 91 0.0031 32.5 5.1 64 82-165 330-393 (444)
53 1ybd_A Uridylate kinase; alpha 21.5 1.4E+02 0.0049 27.4 6.0 46 86-131 8-53 (239)
54 4a7p_A UDP-glucose dehydrogena 21.3 92 0.0031 32.3 5.0 43 82-130 319-361 (446)
55 2y0c_A BCEC, UDP-glucose dehyd 21.3 95 0.0032 32.3 5.1 42 82-129 325-366 (478)
56 1wr8_A Phosphoglycolate phosph 21.2 69 0.0024 28.8 3.7 33 102-136 12-46 (231)
57 2q3e_A UDP-glucose 6-dehydroge 20.1 1.1E+02 0.0036 31.5 5.2 42 82-129 326-367 (467)
58 2x7v_A Probable endonuclease 4 20.1 1.9E+02 0.0067 26.3 6.6 78 110-208 88-166 (287)
No 1
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=100.00 E-value=9.5e-154 Score=1180.91 Aligned_cols=391 Identities=58% Similarity=0.945 Sum_probs=381.3
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHHHH
Q 011942 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSEL 155 (474)
Q Consensus 77 ~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg-~~~~~SL~pva~~Ls~l 155 (474)
+|+|+|++||||||||||||||++ |+|+||+||++++|||+||+++||||||+||||||+| +++++||+|||++|+++
T Consensus 4 ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~a~lpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~l 82 (398)
T 1vpe_A 4 TIRDVDLKGKRVIMRVDFNVPVKD-GVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSEL 82 (398)
T ss_dssp BGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHH
T ss_pred cccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCcCCccCHHHHHHHHHHH
Confidence 455569999999999999999984 8999999999999999999999999999999999998 67899999999999999
Q ss_pred hCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccccc
Q 011942 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL 235 (474)
Q Consensus 156 L~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l 235 (474)
||++|+|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||||||||||||||+||||+||++|+
T Consensus 83 Lg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~l 162 (398)
T 1vpe_A 83 LGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI 162 (398)
T ss_dssp HTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGTS
T ss_pred HCCCceeCCCCCCHHHHHHHhcCCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc
Q 011942 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK 315 (474)
Q Consensus 236 ~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~ 315 (474)
|+||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|++.
T Consensus 163 -ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~ 241 (398)
T 1vpe_A 163 -PSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDK 241 (398)
T ss_dssp -CEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGG
T ss_pred -hhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhh
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEe-CCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcccc
Q 011942 316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVP-ATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGV 394 (474)
Q Consensus 316 ~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~-~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGv 394 (474)
++.|++||++|+++|++|+||+|++|+++|+.++++++++ .++||+|||++||||+|++.|+++|++||||||||||||
T Consensus 242 ~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmGv 321 (398)
T 1vpe_A 242 IDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGV 321 (398)
T ss_dssp HHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSC
T ss_pred HHHHHHHHHHHHhcCCEEECCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCCEEEEECCccc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccc
Q 011942 395 FEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA 469 (474)
Q Consensus 395 fE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 469 (474)
||+++|++||++++++++++++.+++||||||||++|++++|+.|+||||||||||||||||||+||||++|+++
T Consensus 322 FE~~~Fa~GT~~va~aia~~t~~~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 396 (398)
T 1vpe_A 322 FEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIK 396 (398)
T ss_dssp TTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBC
T ss_pred ccCchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCcCCccEEeCChHHHHHHHcCCCCcHHHHHHhc
Confidence 999999999999999999986556799999999999999999999999999999999999999999999999864
No 2
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=100.00 E-value=9.8e-154 Score=1179.58 Aligned_cols=388 Identities=60% Similarity=0.989 Sum_probs=378.9
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhhHHHHHHH
Q 011942 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSEL 155 (474)
Q Consensus 77 ~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg-~~~~~SL~pva~~Ls~l 155 (474)
+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+| +++++||+|||++|+++
T Consensus 5 ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~l 83 (394)
T 1php_A 5 TIRDVDVRGKRVFCRVDFNVPMEQ-GAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGEL 83 (394)
T ss_dssp BGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHH
T ss_pred cccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHHH
Confidence 445558999999999999999984 8999999999999999999999999999999999998 67899999999999999
Q ss_pred hCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccccc
Q 011942 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL 235 (474)
Q Consensus 156 L~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l 235 (474)
||++|+|++||+|++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++|+
T Consensus 84 Lg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~l 163 (394)
T 1php_A 84 LERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL 163 (394)
T ss_dssp HTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGTS
T ss_pred HCCCceECCCcCCHHHHHHHhcCCCCeEEEEcccCCCcchhhCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCc
Q 011942 236 KPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDK 315 (474)
Q Consensus 236 ~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~ 315 (474)
|+||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|++.
T Consensus 164 -p~~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~ 242 (394)
T 1php_A 164 -PAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDK 242 (394)
T ss_dssp -CEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGG
T ss_pred -hhhhcHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCccccchhh
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCccccc
Q 011942 316 LDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVF 395 (474)
Q Consensus 316 ~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvf 395 (474)
++.|++||++|+++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++|||||||||||||
T Consensus 243 ~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvF 322 (394)
T 1php_A 243 IELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVF 322 (394)
T ss_dssp HHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCT
T ss_pred HHHHHHHHHHHHhcCCEEECCcchhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 011942 396 EFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468 (474)
Q Consensus 396 E~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 468 (474)
|+++|++||++++++++++ .+++||||||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 323 E~~~Fa~GT~~va~aia~~--~~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 393 (394)
T 1php_A 323 EMDAFAHGTKAIAEALAEA--LDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393 (394)
T ss_dssp TSGGGCHHHHHHHHHHHHC--TTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCB
T ss_pred cCchHHHHHHHHHHHHHhc--CCCEEEECChHHHHHHHHcCCCCCccEEeCChHHHHHHHcCCCcchHHHhhc
Confidence 9999999999999999996 2569999999999999999999999999999999999999999999999986
No 3
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=100.00 E-value=4.6e-153 Score=1176.24 Aligned_cols=391 Identities=52% Similarity=0.860 Sum_probs=379.7
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHH
Q 011942 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSE 154 (474)
Q Consensus 75 i~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~ 154 (474)
+.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||+|.++++||+|||++|++
T Consensus 7 ~~ti~d~dl~gKrVlvRvD~NVP~~~~g~Itdd~RI~aalpTI~~ll~~GakVil~SHlGRP~g~~~~~SL~pva~~L~~ 86 (403)
T 3q3v_A 7 IISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLAR 86 (403)
T ss_dssp BCBGGGSCCTTCEEEEECCCCCCBCTTCCBSCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHH
T ss_pred CCchhhhccCCCEEEEEeccCCCcCCCCcccChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCcccCHHHHHHHHHH
Confidence 34555569999999999999999985589999999999999999999999999999999999987689999999999999
Q ss_pred HhCCceeeccCCCC-HHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccc
Q 011942 155 LLGIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233 (474)
Q Consensus 155 lL~~~V~f~~d~ig-~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~ 233 (474)
+||++|+|++||+| +++++ +++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++
T Consensus 87 lLg~~V~f~~d~~G~~~~~~-v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~Gi~~ 165 (403)
T 3q3v_A 87 LLDKEIVMAKDVIGEDAKTK-AMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITK 165 (403)
T ss_dssp HHTSCCEECSSSSSHHHHHH-HHHCCTTCEEECSCGGGSTTGGGTCHHHHHHHHHTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred HHCCCeEecCCCCCcHHHHH-HhcCCCCcEEEEeecccccchhhcHHHHHHHHHhhCCEEEECcchhhhhcCcchhhHHH
Confidence 99999999999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc--chhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCccc
Q 011942 234 YLKPS--VAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311 (474)
Q Consensus 234 ~l~~s--~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~Slv 311 (474)
|+|++ ||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+|++
T Consensus 166 ~lp~~~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~ 245 (403)
T 3q3v_A 166 FFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLL 245 (403)
T ss_dssp GSCTTSEEECHHHHHHHHHHHHHTTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSCC
T ss_pred hCCcchhhccHHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCcccc
Confidence 99657 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCc
Q 011942 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGP 391 (474)
Q Consensus 312 E~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGP 391 (474)
|++.++.|++||++|+++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++|||||||||
T Consensus 246 e~d~~~~a~~ll~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTIvWNGP 325 (403)
T 3q3v_A 246 EEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGP 325 (403)
T ss_dssp CGGGHHHHHHHHHHHHHTTCEEECCSEEEEESSSSTTSCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred chhhHHHHHHHHHHHHHcCCEEECCceEEEeeccCCCCceEEEecccCCCCCEeeecChHHHHHHHHHHHhCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccc
Q 011942 392 MGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA 469 (474)
Q Consensus 392 mGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 469 (474)
|||||+++|++||++++++++++ +++||+|||||++|++++|++|+||||||||||||||||||+||||++|+++
T Consensus 326 ~GvFE~~~Fa~GT~~va~aia~~---~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 400 (403)
T 3q3v_A 326 MGVFEIDKFSKGSIKMSHYISEG---HATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSK 400 (403)
T ss_dssp SSCTTSGGGCHHHHHHHHHHHHS---SSEEEEESHHHHHHHHHTTCGGGSSEECCCHHHHHHHHTTCCCHHHHTTBC-
T ss_pred CccccccchhHHHHHHHHHHHhc---CCEEEECCcHHHHHHHHcCCcCCccEEcCChHHHHHHHcCCCCcHHHHHhhh
Confidence 99999999999999999999997 4799999999999999999999999999999999999999999999999875
No 4
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=100.00 E-value=5.2e-153 Score=1172.95 Aligned_cols=388 Identities=52% Similarity=0.830 Sum_probs=378.7
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH
Q 011942 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL 155 (474)
Q Consensus 76 ~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~l 155 (474)
.+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+||||||+|+++++||+|||++|+++
T Consensus 2 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRPkg~~~~~SL~pva~~L~~l 80 (390)
T 1v6s_A 2 RTLLDLDPKGKRVLVRVDYNVPVQD-GKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH 80 (390)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred CChhhcCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 3566679999999999999999984 899999999999999999999999999999999999977899999999999999
Q ss_pred hCCceeeccCCCC-HHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccccc
Q 011942 156 LGIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKY 234 (474)
Q Consensus 156 L~~~V~f~~d~ig-~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~ 234 (474)
|| +|+|++||+| ++++++|++|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++|
T Consensus 81 Lg-~V~f~~d~~G~~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~ 159 (390)
T 1v6s_A 81 LP-EARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARL 159 (390)
T ss_dssp CT-TEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGT
T ss_pred hC-CceeccccCCcHHHHHHHhcCCCCeEEEEcccccccccccCCHHHHHHHHhhCCEEEEcCcccccccccchhhHhhh
Confidence 99 9999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 011942 235 LKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEED 314 (474)
Q Consensus 235 l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~ 314 (474)
+ |+||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|++
T Consensus 160 l-p~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d 238 (390)
T 1v6s_A 160 L-PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED 238 (390)
T ss_dssp S-CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG
T ss_pred h-HHhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchh
Confidence 8 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCcccc
Q 011942 315 KLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGV 394 (474)
Q Consensus 315 ~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmGv 394 (474)
.++.|++||++|+++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++||||||||||||
T Consensus 239 ~~~~a~~ll~~a~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGv 318 (390)
T 1v6s_A 239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGV 318 (390)
T ss_dssp GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSC
T ss_pred hHHHHHHHHHHHHHcCCEEECCcChhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 011942 395 FEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468 (474)
Q Consensus 395 fE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 468 (474)
||+++|++||+++++++++++ +++||||||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 319 FE~~~Fa~GT~~va~aia~~~--~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 390 (390)
T 1v6s_A 319 FEVPPFDEGTLAVGQAIAALE--GAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390)
T ss_dssp TTSTTTTHHHHHHHHHHHTCS--SCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred ccCchHHHHHHHHHHHHHhcC--CCEEEECChHHHHHHHHcCCccCceEEeCChHHHHHHHcCCCcchHHHhcC
Confidence 999999999999999999963 469999999999999999999999999999999999999999999999974
No 5
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=100.00 E-value=1.9e-152 Score=1175.11 Aligned_cols=389 Identities=49% Similarity=0.813 Sum_probs=378.4
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCC-----------------
Q 011942 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV----------------- 139 (474)
Q Consensus 77 ~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~----------------- 139 (474)
+|+|+|++||||||||||||||++ |+|+||+||++++|||+||+++||||||+||||||+|.
T Consensus 4 ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTI~~ll~~Gakvil~SHlGRPkg~~~~~~~~~~~~~~~~~~ 82 (415)
T 16pk_A 4 SINECDLKGKKVLIRVDFNVPVKN-GKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGF 82 (415)
T ss_dssp BGGGSCCTTCEEEEEECCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCTTC
T ss_pred cccccCcCCCEEEEEeccCCcccC-CccCchHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcccccccccccccccccC
Confidence 455569999999999999999984 89999999999999999999999999999999999985
Q ss_pred CCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCc----HHHHHHHhhcCCEEee
Q 011942 140 TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKND----PEFAKKLASLADLYVN 215 (474)
Q Consensus 140 ~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd----~~fak~LA~l~DiyVN 215 (474)
++++||+|||++|+++||++|+|++||+|++++ |++|++|||+||||+|||+||++|| ++|+++||+|||||||
T Consensus 83 ~~~~SL~pva~~Ls~lLg~~V~f~~d~~G~~~~--v~~l~~G~VlLLEN~RF~~~E~~nd~~e~~~fa~~LA~l~DvyVN 160 (415)
T 16pk_A 83 QQKATLKPVAKRLSELLLRPVTFAPDCLNAADV--VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS 160 (415)
T ss_dssp CGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHH--HHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred CcccCHHHHHHHHHHHhCCCCeeCCccCChHHH--hhcCCCCcEEEeccccCCcccccCCccccHHHHHHHHhhCCEEEE
Confidence 689999999999999999999999999999998 9999999999999999999999999 9999999999999999
Q ss_pred cccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHH
Q 011942 216 DAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMI 295 (474)
Q Consensus 216 DAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma 295 (474)
||||||||+||||+||++|++++||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||
T Consensus 161 DAFgtaHRahaS~~Gi~~~lp~~~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma 240 (415)
T 16pk_A 161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240 (415)
T ss_dssp ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred cccccccccccchhhhhhhcccccccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHH
Confidence 99999999999999999999669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHH
Q 011942 296 FTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKT 375 (474)
Q Consensus 296 ~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~ 375 (474)
||||+|+|++||+||+|++.++.|++||++|+++|++|+||+|++|+++|+.++++++++.++||+|||+|||||+|++.
T Consensus 241 ~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~ 320 (415)
T 16pk_A 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEK 320 (415)
T ss_dssp HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHH
T ss_pred HHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEECCceeehhhcccCCCceEEeehhcCCCCCEEeecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcC-CCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHh
Q 011942 376 FNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSG-KGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLEL 454 (474)
Q Consensus 376 ~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~-~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~ 454 (474)
|+++|++||||||||||||||+++|++||++++++++++++ .+++||||||||++|++++|+.|+||||||||||||||
T Consensus 321 ~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~~a~sIvGGGDt~aAv~~~G~~d~~shiSTGGGA~Le~ 400 (415)
T 16pk_A 321 YVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLEL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHH
T ss_pred HHHHHHhCCEEEEECCcccccCchHHHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHcCCccCceEEeCChHHHHHH
Confidence 99999999999999999999999999999999999999752 36799999999999999999999999999999999999
Q ss_pred hcCCCCchhhcccc
Q 011942 455 LEGKELPGVVALDE 468 (474)
Q Consensus 455 LeGk~LPgv~aL~~ 468 (474)
||||+||||++|++
T Consensus 401 LeGk~LPgv~aL~~ 414 (415)
T 16pk_A 401 LEGKTLPGVTVLDD 414 (415)
T ss_dssp HTTCCCHHHHTSCB
T ss_pred HcCCCcchHHHhhc
Confidence 99999999999986
No 6
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=100.00 E-value=5.3e-152 Score=1173.02 Aligned_cols=391 Identities=51% Similarity=0.860 Sum_probs=380.1
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhhHHHHH
Q 011942 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLVPRLS 153 (474)
Q Consensus 76 ~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg-~~~~~SL~pva~~Ls 153 (474)
.+|+|+|++||||||||||||||++ |+|+||+||++++|||+||+++||| |||+||||||+| +++++||+|||++|+
T Consensus 6 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTIk~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~L~ 84 (415)
T 1qpg_A 6 LSVQDLDLKDKRVFIRVDFNVPLDG-KKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQ 84 (415)
T ss_dssp CBGGGCCCTTCEEEEECCCCCCBSS-SSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHHHH
Confidence 3555569999999999999999984 8999999999999999999999999 999999999998 678999999999999
Q ss_pred HHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccc----------cCcHH----HHHHHhhcCCEEeecccc
Q 011942 154 ELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----------KNDPE----FAKKLASLADLYVNDAFG 219 (474)
Q Consensus 154 ~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~----------~nd~~----fak~LA~l~DiyVNDAFg 219 (474)
++||++|+|++||+|++++++|++|++|||+||||+|||+||+ +||++ |+++||+|||||||||||
T Consensus 85 ~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~g~~~~~~~~~knd~~~~~~fa~~LA~l~DvyVNDAFg 164 (415)
T 1qpg_A 85 SLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFG 164 (415)
T ss_dssp HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEECCGG
T ss_pred HHHCCCceeCCCcCCHHHHHHHhcCCCCeEEEeccCccChhhccccccccchhccCHHHHHHHHHHHHhhCCEEEecchh
Confidence 9999999999999999999999999999999999999999999 99999 999999999999999999
Q ss_pred cccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHH
Q 011942 220 TAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (474)
Q Consensus 220 taHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (474)
||||+||||+||++|+ | ||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||
T Consensus 165 taHRahaS~~gi~~~l-p-~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl 242 (415)
T 1qpg_A 165 TAHRAHSSMVGFDLPQ-R-AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFK 242 (415)
T ss_dssp GTTSCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred hchhhcCcccchhhcc-c-cccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHH
Confidence 9999999999999998 6 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCc-cCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeE-EeCCCCCCCCcccccChhHHHHHH
Q 011942 300 KAQGIS-VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV-VPATAIPDGWMGLDIGPDSVKTFN 377 (474)
Q Consensus 300 ~A~G~~-iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~-v~~~~Ip~~~~~lDIGp~Ti~~~~ 377 (474)
+|+|++ ||+||+|++.++.|++||++|+++|++|+||+|++|+++|+.++++++ ++.++||+|||+|||||+|++.|+
T Consensus 243 ~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~ 322 (415)
T 1qpg_A 243 KVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322 (415)
T ss_dssp HHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHH
T ss_pred HHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEEECCcchhhhhccCCCCCeEEecchhcCCCCCeeeccCHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999888 888999999999999999999999
Q ss_pred HHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcC
Q 011942 378 EALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEG 457 (474)
Q Consensus 378 ~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeG 457 (474)
++|.+||||||||||||||+++|++||++++++++++++.+++||||||||++|++++|++|+|||||||||||||||||
T Consensus 323 ~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LEG 402 (415)
T 1qpg_A 323 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEG 402 (415)
T ss_dssp HHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHHTS
T ss_pred HHHhhCCEEEEeCCccccccchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCCCCceEEeCChHHHHHHHcC
Confidence 99999999999999999999999999999999999986557899999999999999999999999999999999999999
Q ss_pred CCCchhhccccc
Q 011942 458 KELPGVVALDEA 469 (474)
Q Consensus 458 k~LPgv~aL~~~ 469 (474)
|+||||++|+++
T Consensus 403 k~LPgv~aL~~~ 414 (415)
T 1qpg_A 403 KELPGVAFLSEK 414 (415)
T ss_dssp CCCHHHHTSCBC
T ss_pred CCCchHHHhhcC
Confidence 999999999864
No 7
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=100.00 E-value=1e-151 Score=1171.49 Aligned_cols=391 Identities=48% Similarity=0.832 Sum_probs=378.5
Q ss_pred ccCccCC-CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CCCCCChhhhHHH
Q 011942 75 VGELSGA-DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLVPR 151 (474)
Q Consensus 75 i~~l~d~-dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg-~~~~~SL~pva~~ 151 (474)
..+|+|+ |++|||||||||||||+++ |+|+||+||++++|||+||+++||| |||+||||||+| +++++||+|||++
T Consensus 7 ~~ti~d~~dl~gKrVlvRvD~NVP~~~-g~Itdd~RI~aalpTI~~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~ 85 (417)
T 3oz7_A 7 KLSISDLKDIKNKKVLVRVDFNVPIEN-GIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVAET 85 (417)
T ss_dssp CCBGGGCSCCTTCEEEEECCCCCCEET-TEESCCHHHHTTHHHHHHHHHHTCSEEEEECCCSCCTTSCCGGGCSHHHHHH
T ss_pred CCchhHhhccCCCEEEEEeccCCCccC-CcCCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHH
Confidence 3455556 8999999999999999984 8999999999999999999999999 999999999998 6789999999999
Q ss_pred HHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccc---------------cCcHHHHHHHhhcCCEEeec
Q 011942 152 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE---------------KNDPEFAKKLASLADLYVND 216 (474)
Q Consensus 152 Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~---------------~nd~~fak~LA~l~DiyVND 216 (474)
|+++||++|+|++||+|+++++++++|++|||+||||+|||+||+ +|+++|+++||+||||||||
T Consensus 86 L~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~eE~~~~~~~~~~~~k~~~~n~~~fa~~LA~l~DvyVND 165 (417)
T 3oz7_A 86 LKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFIND 165 (417)
T ss_dssp HHHHHTSCCEEESCSSSHHHHHHHHHSCTTEEEEECCGGGSHHHHSEEECTTSCEEECCHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhCCCcEECCCCCCHHHHHHHhcCCCCcEEEEccccccccccccccccccccccCChhhhHHHHHHHHhhCCEEEEC
Confidence 999999999999999999999999999999999999999999999 45789999999999999999
Q ss_pred ccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHH
Q 011942 217 AFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIF 296 (474)
Q Consensus 217 AFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~ 296 (474)
|||||||+||||+||+ ++|+||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+|||
T Consensus 166 AFgtaHRahaS~~Gi~--~~~~~aG~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~ 243 (417)
T 3oz7_A 166 AFGTAHRAHSSMVGVK--LNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAY 243 (417)
T ss_dssp CGGGTTSCCHHHHCCC--CSCEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEETTHHH
T ss_pred cchhhhhccCcccccc--cccccccHHHHHHHHHHHHHHcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEeccHHHH
Confidence 9999999999999999 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-cCCccCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEE-eCCCCCCCCcccccChhHHH
Q 011942 297 TFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVV-PATAIPDGWMGLDIGPDSVK 374 (474)
Q Consensus 297 tFL~A-~G~~iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v-~~~~Ip~~~~~lDIGp~Ti~ 374 (474)
|||+| +|++||+|++|++.++.|++|+++|+++|++|+||+|++|+++|+.+++++++ +.++||+|||++||||+|++
T Consensus 244 tFl~A~~G~~iG~Sl~e~d~~~~a~~il~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~ 323 (417)
T 3oz7_A 244 TFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIE 323 (417)
T ss_dssp HHHHHHHCCCBTTSCCCTTTHHHHHHHHHHHHHTTCEEECCSEEEEESSSSTTSCEEEEESSSCBCTTCEEEEECHHHHH
T ss_pred HHHHHHcCCccCchhcCccChHHHHHHHHHHHHcCCEEECCceeEEeecccCCCCeEEecccccCCCCCeeeecCHHHHH
Confidence 99999 89999999999999999999999999999999999999999999999999998 68999999999999999999
Q ss_pred HHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHh
Q 011942 375 TFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLEL 454 (474)
Q Consensus 375 ~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~ 454 (474)
.|+++|++||||||||||||||+++|++||++++++++++++++++||+|||||++|++++|++|+||||||||||||||
T Consensus 324 ~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~ 403 (417)
T 3oz7_A 324 NYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLEL 403 (417)
T ss_dssp HHHHHHHTCSEEEEESCSBCTTSSTTTHHHHHHHHHHHHHHHHTCEEEECSHHHHHHHHHTTCGGGSSEECSCSHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCccccccchhHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCcCCccEEcCChHHHHHH
Confidence 99999999999999999999999999999999999999987668999999999999999999999999999999999999
Q ss_pred hcCCCCchhhcccc
Q 011942 455 LEGKELPGVVALDE 468 (474)
Q Consensus 455 LeGk~LPgv~aL~~ 468 (474)
||||+||||++|++
T Consensus 404 LeGk~LPgv~aL~~ 417 (417)
T 3oz7_A 404 LEGKELPGVLALSN 417 (417)
T ss_dssp HTTCCCHHHHTSCC
T ss_pred HcCCCCcceeeccC
Confidence 99999999999974
No 8
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Probab=100.00 E-value=1.4e-151 Score=1162.80 Aligned_cols=386 Identities=48% Similarity=0.763 Sum_probs=375.0
Q ss_pred cccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCC-CC-CCCCCChhhhHHH
Q 011942 74 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KG-VTPKFSLAPLVPR 151 (474)
Q Consensus 74 si~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRP-kg-~~~~~SL~pva~~ 151 (474)
++.+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+|||||| +| +++++||+|||++
T Consensus 5 ~~~ti~d~dl~gKrVlvRvD~NVP~~~-g~Itdd~RI~a~lpTI~~ll~~gakVil~SHlGRP~kg~~~~~~SL~pva~~ 83 (395)
T 4fey_A 5 SFLTLKDVDLKDKKVLVRVDFNVPVKD-GKVTSKVRIEAAIPTIQYILDQGGAVILMSHLGRPTEGEYDSQFSLEPVAKA 83 (395)
T ss_dssp CSCBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHTHHHHHHHHHHTCEEEEECCCSCCCTTSCCGGGCSHHHHHH
T ss_pred ccCchhhcCcCCCEEEEEeccCCCCcC-CcCCChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCcCcccCHHHHHHH
Confidence 556666679999999999999999984 89999999999999999999999999999999999 66 5789999999999
Q ss_pred HHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccc
Q 011942 152 LSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 231 (474)
Q Consensus 152 Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi 231 (474)
|+++||++|+|++||+|+ | +|++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||
T Consensus 84 L~~lLg~~V~f~~d~~~~-----v-~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~Gi 157 (395)
T 4fey_A 84 LSEIINKPVKFAKDWLDG-----V-DVKAGEIVMCENVRFNSGEKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGV 157 (395)
T ss_dssp HHHHHCSCEEEESSTTTC-----C-CCCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCTTTTHH
T ss_pred HHHHHCCCcEECcccccc-----c-CCCCCcEEEEeecccCchhhhcHHHHHHHHHhhCCEEEECcchhhhhhcccchhh
Confidence 999999999999999984 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCccc
Q 011942 232 TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLV 311 (474)
Q Consensus 232 ~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~Slv 311 (474)
++|+|++||||||||||++|++++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+|++
T Consensus 158 ~~~lp~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~ 237 (395)
T 4fey_A 158 AKYIPVACAGILLTNEIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLY 237 (395)
T ss_dssp HHHSSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCCC
T ss_pred hccCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCcccc
Confidence 99996599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCc
Q 011942 312 EEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGP 391 (474)
Q Consensus 312 E~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGP 391 (474)
|++.++.|++||++|+++|++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++|||||||||
T Consensus 238 E~d~~~~a~~il~~a~~~g~~i~LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGP 317 (395)
T 4fey_A 238 EQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAELLKSANTILWNGP 317 (395)
T ss_dssp CGGGHHHHHHHHHHHHHTTCBCCCCSEEEEESSSSTTCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEECC
T ss_pred chhhHHHHHHHHHHHHHcCCEEEccceEEEeccccCCCceEEEEcccCCCCCcceecChHHHHHHHHHHHhCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccccc
Q 011942 392 MGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA 469 (474)
Q Consensus 392 mGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 469 (474)
|||||+++|++||++++++++++ +++||+|||||++|++++|++|+||||||||||||||||||+||||++|+++
T Consensus 318 ~GvFE~~~Fa~GT~~va~aia~~---~a~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~ 392 (395)
T 4fey_A 318 VGVFEFDNFAEGTKALSLAIAQS---HAFSVAGGGDTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKEK 392 (395)
T ss_dssp SSCTTSGGGCHHHHHHHHHHHHH---CSEEEEESHHHHHHHHHTTCSTTSSEEECCSHHHHHHHTTCCCHHHHHHHHT
T ss_pred CCccccchhhHHHHHHHHHHHhc---CCeEEECCcHHHHHHHHcCCcCCceEEcCChHHHHHHHcCCCchHHHHHHhh
Confidence 99999999999999999999996 6799999999999999999999999999999999999999999999999875
No 9
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...
Probab=100.00 E-value=1.1e-151 Score=1171.00 Aligned_cols=390 Identities=50% Similarity=0.856 Sum_probs=377.4
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCC-CC-CCCChhhhHHHH
Q 011942 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VT-PKFSLAPLVPRL 152 (474)
Q Consensus 76 ~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg-~~-~~~SL~pva~~L 152 (474)
.+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||| |||+||||||+| ++ +++||+|||++|
T Consensus 6 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~aalpTIk~ll~~gak~Vil~SHlGRPkg~~~~~~~SL~pva~~L 84 (416)
T 2wzb_A 6 LTLDKLDVKGKRVVMRVDFNVPMKN-NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVEL 84 (416)
T ss_dssp CBGGGCCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCCHHHHCSHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCCCCCccccCHHHHHHHH
Confidence 3555569999999999999999984 8999999999999999999999999 999999999998 45 799999999999
Q ss_pred HHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccc-----------cCcHH----HHHHHhhcCCEEeecc
Q 011942 153 SELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE-----------KNDPE----FAKKLASLADLYVNDA 217 (474)
Q Consensus 153 s~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~-----------~nd~~----fak~LA~l~DiyVNDA 217 (474)
+++||++|+|++||+|++++++|++|++|||+||||+|||+||+ +||++ |+++||+|||||||||
T Consensus 85 ~~lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~~~~~~~~~~~knd~e~~~~fa~~LA~l~DvyVNDA 164 (416)
T 2wzb_A 85 KSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDA 164 (416)
T ss_dssp HHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTCC----------CHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHCCCCeeCCccCCHHHHHHHhcCCCCcEEEecccccchhhcccccccccccccCCHHHHHHHHHHHHhhCCEEEecc
Confidence 99999999999999999999999999999999999999999999 89999 9999999999999999
Q ss_pred cccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHH
Q 011942 218 FGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFT 297 (474)
Q Consensus 218 FgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~t 297 (474)
||||||+||||+||++|+ | ||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||
T Consensus 165 FgtaHRahaS~~gi~~~l-p-~aG~Lm~kEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~T 242 (416)
T 2wzb_A 165 FGTAHRAHSSMVGVNLPQ-K-AGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFT 242 (416)
T ss_dssp GGGTTCCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHH
T ss_pred cccchhhccchhhhhhcc-h-hhhHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHH
Confidence 999999999999999998 6 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCc-cCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeE-EeCCCCCCCCcccccChhHHHH
Q 011942 298 FYKAQGIS-VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV-VPATAIPDGWMGLDIGPDSVKT 375 (474)
Q Consensus 298 FL~A~G~~-iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~-v~~~~Ip~~~~~lDIGp~Ti~~ 375 (474)
||+|+|++ ||+||+|++.++.|++||++|+++|++|+||+|++|+++|+.++++++ ++.++||+|||+|||||+|++.
T Consensus 243 Fl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~ 322 (416)
T 2wzb_A 243 FLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKK 322 (416)
T ss_dssp HHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEEECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHH
T ss_pred HHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEEECCcchhhhhccCCCCCeEEecchhcCCCCCeeeecCHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999988 8889999999999999999999
Q ss_pred HHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhh
Q 011942 376 FNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELL 455 (474)
Q Consensus 376 ~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~L 455 (474)
|+++|++||||||||||||||+++|++||++++++++++++.+++||||||||++|++++|+.|+|||||||||||||||
T Consensus 323 ~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~t~~~a~sIvGGGDt~aav~~~g~~d~~shiSTGGGA~Le~L 402 (416)
T 2wzb_A 323 YAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELL 402 (416)
T ss_dssp HHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESTTHHHHHHHTTCTTSSSEEESCSHHHHHHH
T ss_pred HHHHHhhCCEEEEECCCcccccchHHHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCCCCceEEeCchHHHHHHH
Confidence 99999999999999999999999999999999999999875678999999999999999999999999999999999999
Q ss_pred cCCCCchhhcccc
Q 011942 456 EGKELPGVVALDE 468 (474)
Q Consensus 456 eGk~LPgv~aL~~ 468 (474)
|||+||||++|++
T Consensus 403 EGk~LPgv~aL~~ 415 (416)
T 2wzb_A 403 EGKVLPGVDALSN 415 (416)
T ss_dssp HTCCCHHHHTSCB
T ss_pred cCCCccHHHHHhc
Confidence 9999999999975
No 10
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.2e-150 Score=1148.21 Aligned_cols=378 Identities=48% Similarity=0.761 Sum_probs=366.4
Q ss_pred CccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCC-CC-CCCCCChhhhHHHHHH
Q 011942 77 ELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KG-VTPKFSLAPLVPRLSE 154 (474)
Q Consensus 77 ~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRP-kg-~~~~~SL~pva~~Ls~ 154 (474)
+|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++||||||+|||||| || +++++||+|||++|++
T Consensus 5 ti~d~dl~gKrVlvRvD~NVP~~~-g~Itdd~RI~aalpTI~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~~ 83 (387)
T 1zmr_A 5 KMTDLDLAGKRVFIRADLNVPVKD-GKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKD 83 (387)
T ss_dssp BGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHHH
T ss_pred cccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHHH
Confidence 445558999999999999999984 89999999999999999999999999999999999 77 5799999999999999
Q ss_pred HhCCceeeccCCC-CHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccccc
Q 011942 155 LLGIQVVKADDCI-GPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233 (474)
Q Consensus 155 lL~~~V~f~~d~i-g~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~ 233 (474)
+||++|+|++||+ | |+ |++|||+||||+|||+||++||++|+++||+|||+|||||||||||+||||+||++
T Consensus 84 lLg~~V~f~~d~~~G------v~-l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~ 156 (387)
T 1zmr_A 84 KLSNPVRLVKDYLDG------VD-VAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGK 156 (387)
T ss_dssp HCSSCEEEESCCTTC------CC-CCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCCCCCCHHH
T ss_pred HhCCCCEECcccccC------cc-CCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhhh
Confidence 9999999999999 8 88 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCccccc
Q 011942 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEE 313 (474)
Q Consensus 234 ~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~ 313 (474)
|++++||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||+|||||+||||||+|+|++||+||+|+
T Consensus 157 ~lp~~~aG~Lm~kEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~ 236 (387)
T 1zmr_A 157 FADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEA 236 (387)
T ss_dssp HSSEEEECHHHHHHHHHHHHHHSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCG
T ss_pred hCchhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCCCccccch
Confidence 99669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCCCCCCCcccccChhHHHHHHHHhccCCeEEEeCccc
Q 011942 314 DKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMG 393 (474)
Q Consensus 314 ~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~aktI~WNGPmG 393 (474)
+.++.|++||++ ++|+||+|++|+++|+.++++++++.++||+|||++||||+|++.|+++|++|||||||||||
T Consensus 237 d~~~~a~~ll~~-----~~i~lPvD~vva~~f~~~~~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmG 311 (387)
T 1zmr_A 237 DLVDEAKRLLTT-----CNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVG 311 (387)
T ss_dssp GGHHHHHHHHTT-----SCCCCCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSB
T ss_pred hhHHHHHHHHHh-----CCccCCccceeeeccCCCCceEEeehhhCCCCCEEeecCHHHHHHHHHHHhhCCEEEEECCcc
Confidence 999999999977 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccccC
Q 011942 394 VFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEAT 470 (474)
Q Consensus 394 vfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~ 470 (474)
|||+++|++||++++++++++ +++||||||||++|++++|+.|+||||||||||||||||||+||||++|++++
T Consensus 312 vFE~~~Fa~GT~~va~aia~~---~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~~~ 385 (387)
T 1zmr_A 312 VFEFPNFRKGTEIVANAIADS---EAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERA 385 (387)
T ss_dssp CTTSGGGCHHHHHHHHHHHHS---SSEEEECSHHHHHHHHHHTCGGGSSEECCCTHHHHHHHTTCCCHHHHHHHHHT
T ss_pred cccCchHHHHHHHHHHHHHhc---CCeEEECCHHHHHHHHHcCCccCceEEeCChHHHHHHHcCCCCchHHHHHhhh
Confidence 999999999999999999996 36999999999999999999999999999999999999999999999998653
No 11
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-147 Score=1139.12 Aligned_cols=379 Identities=36% Similarity=0.578 Sum_probs=367.5
Q ss_pred cCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHH
Q 011942 76 GELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSEL 155 (474)
Q Consensus 76 ~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~l 155 (474)
.+|+|+|++||||||||||||||++ |+|+||+||++++|||+||+++||||||+|||||| |.++++||+|||++|+++
T Consensus 2 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~a~lpTI~~ll~~gakVvl~SHlGRP-G~~~~~SL~pva~~L~~l 79 (410)
T 2cun_A 2 FRLEDFNFHNKTVFLRVDLNSPMKD-GKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKP-YSEDYTTTEEHARVLSEL 79 (410)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCT-TCTTCCCSHHHHHHHHHH
T ss_pred CchhhcCCCCCEEEEEecCCCcccC-CcCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCCCC-CCCCCcCHHHHHHHHHHH
Confidence 4677779999999999999999974 89999999999999999999999999999999999 768999999999999999
Q ss_pred hCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccccCcH-------HHHHHHhhcCCEEeecccccccccCccc
Q 011942 156 LGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP-------EFAKKLASLADLYVNDAFGTAHRAHAST 228 (474)
Q Consensus 156 L~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~-------~fak~LA~l~DiyVNDAFgtaHR~haS~ 228 (474)
||++|+|++||+|++++++|++|++|||+||||+|||+||++|++ +|+++||+|||+|||||||||||+||||
T Consensus 80 Lg~~V~f~~d~~G~~a~~~i~~l~~G~VlLLEN~RF~~eE~~nd~~e~~a~~~fa~~LA~l~DvyVNDAFgtaHRahaS~ 159 (410)
T 2cun_A 80 LDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSL 159 (410)
T ss_dssp HTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCHHH
T ss_pred HCCCCeeCCCcCCHHHHHHHhcCCCCeEEEEcccccccccccCCchhhhhHHHHHHHHHhhCCEEEecccccccccCCce
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred cccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHh--cCeEEEchHHHHHHHHHcCCcc
Q 011942 229 EGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLET--CDILLLGGGMIFTFYKAQGISV 306 (474)
Q Consensus 229 vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~k--vD~lliGG~ma~tFL~A~G~~i 306 (474)
+||++|+ |+||||||||||++|.+++++|+|||+||+||+||||||++|+||++| ||+|||||+||||||+|+|++|
T Consensus 160 ~Gi~~~l-ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~k~~vD~liiGGgma~tFl~A~G~~i 238 (410)
T 2cun_A 160 VGFARIK-PMIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDL 238 (410)
T ss_dssp HTTTTTS-CEEECHHHHHHHHHHHHHHTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCC
T ss_pred echhhhh-hhhhhHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHhcccCCCEEEEChHHHHHHHHHcCCCc
Confidence 9999998 789999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCc---cccc----CchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeEEeCCC-----CCCCCcccccChhHHH
Q 011942 307 GSS---LVEE----DKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATA-----IPDGWMGLDIGPDSVK 374 (474)
Q Consensus 307 G~S---lvE~----~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~v~~~~-----Ip~~~~~lDIGp~Ti~ 374 (474)
|+| ++|+ +.++.|++||+++ |++|+||+|++|+++ +++++++.++ || |||++||||+|++
T Consensus 239 G~S~~~l~E~~g~~d~~~~a~~ll~ka---g~~i~lPvD~vva~~----a~~~~~~~~~~~~~~ip-~~m~lDiGp~T~~ 310 (410)
T 2cun_A 239 GRKNVEFMKKKGLLDYVKHAEEILDEF---YPYIRTPVDFAVDYK----GERVEIDLLSENRGLLH-QYQIMDIGKRTAE 310 (410)
T ss_dssp CHHHHHHHHTTTGGGGHHHHHHHHHHH---GGGEECCSEEEEEET----TEEEEEESSSGGGGGGG-TSCEEEECHHHHH
T ss_pred CcchhhhhhcccchhhHHHHHHHHHhc---cCeEeCCceeEEecC----CCeEEEecccccccCCC-CCeeeeeCHHHHH
Confidence 999 9999 9999999999998 899999999999975 6677888888 99 9999999999999
Q ss_pred HHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHh
Q 011942 375 TFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLEL 454 (474)
Q Consensus 375 ~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shiSTGGGA~Le~ 454 (474)
.|+++|++||||||||||||||+++|++||++++++++++ +++||||||||++|++++|+ |+||||||||||||||
T Consensus 311 ~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia~~---~~~sivGGGDt~aav~~~g~-d~~shiSTGGGA~Le~ 386 (410)
T 2cun_A 311 KYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADS---PAFSVLGGGHSIASIQKYGI-TGITHISTGGGAMLSF 386 (410)
T ss_dssp HHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHS---SSEEEEECGGGGGGGGGSCC-CCCSEECSCSHHHHHH
T ss_pred HHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhc---CCeEEECChHHHHHHHHhCC-CCcEEEcCChHHHHHH
Confidence 9999999999999999999999999999999999999996 46999999999999999999 9999999999999999
Q ss_pred hcCCCCchhhccccc
Q 011942 455 LEGKELPGVVALDEA 469 (474)
Q Consensus 455 LeGk~LPgv~aL~~~ 469 (474)
||||+||||++|+++
T Consensus 387 LeGk~LPgv~aL~~~ 401 (410)
T 2cun_A 387 FAGEELPVLRALQIS 401 (410)
T ss_dssp HTTCCCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 999999999999864
No 12
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=100.00 E-value=2.1e-124 Score=967.84 Aligned_cols=329 Identities=51% Similarity=0.864 Sum_probs=322.2
Q ss_pred CCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCccccc----------cCcHH----HHHHH
Q 011942 141 PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----------KNDPE----FAKKL 206 (474)
Q Consensus 141 ~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF~~eE~----------~nd~~----fak~L 206 (474)
+++||+|||++|+++||++|+|++||+|++++++|++|++|||+||||+|||+||+ +||++ |+++|
T Consensus 2 ~~~SL~pva~~L~~lLg~~V~f~~d~vG~~~~~~v~~l~~G~VlLLEN~RF~~~E~g~~~~~~~~~knd~e~~~~fa~~L 81 (416)
T 1fw8_A 2 SKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHEL 81 (416)
T ss_dssp CTTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHCCCCEeCCCCCCHHHHHHHHcCCCCeEEEEcccccccccccccccccchhccCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999 89999 99999
Q ss_pred hhcCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHHhcC
Q 011942 207 ASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCD 286 (474)
Q Consensus 207 A~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD 286 (474)
|+|||||||||||||||+||||+||++|+ | ||||||||||++|.+++++|+|||+||+||+||||||++|+||++|||
T Consensus 82 A~l~DvyVNDAFgtAHRahaS~~Gi~~~l-p-~aG~LmekEl~~l~kal~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD 159 (416)
T 1fw8_A 82 SSLADVYINDAFGTAHRAHSSMVGFDLPQ-R-AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVD 159 (416)
T ss_dssp HTTCSEEEECCGGGTTSCCHHHHCCCCSC-E-EECHHHHHHHHHHHHHHHSCCSSEEEEEECSCSTTTHHHHHHHHTTCS
T ss_pred HhhCCEEEeccccccchhcCchhhhhhhh-c-cccHHHHHHHHHHHHHHcCCCCCeEEEEcCcchhhHHHHHHHHHHhhC
Confidence 99999999999999999999999999998 5 999999999999999999999999999999999999999999999999
Q ss_pred eEEEchHHHHHHHHHcCCc-cCCcccccCchHHHHHHHHHHhhCCCeEEccceEEEecccCCCCCeeE-EeCCCCCCCCc
Q 011942 287 ILLLGGGMIFTFYKAQGIS-VGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKV-VPATAIPDGWM 364 (474)
Q Consensus 287 ~lliGG~ma~tFL~A~G~~-iG~SlvE~~~~~~a~~il~~a~~~g~kIilPvD~vva~~~~~~~~~~~-v~~~~Ip~~~~ 364 (474)
+|||||+||||||+|+|++ ||+||+|++.++.|++||++|+++|++|+||+|++|+++|+.++++++ ++.++||+|||
T Consensus 160 ~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m 239 (416)
T 1fw8_A 160 SIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQ 239 (416)
T ss_dssp EEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTCCEEEEETTTCCCTTCE
T ss_pred eeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHhcCCEEECCceEEEeeccCCCCCeEEecchhcCCCCCE
Confidence 9999999999999999999 999999999999999999999999999999999999999999999988 88899999999
Q ss_pred ccccChhHHHHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCceEE
Q 011942 365 GLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHI 444 (474)
Q Consensus 365 ~lDIGp~Ti~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~shi 444 (474)
+|||||+|++.|+++|.+||||||||||||||+++|++||++++++++++++.+++||||||||++|++++|+.|+||||
T Consensus 240 ~lDIGp~T~~~~~~~i~~akTIvWNGPmGVFE~~~Fa~GT~~va~aia~~~~~~a~sIvGGGDt~aav~~~G~~d~~shi 319 (416)
T 1fw8_A 240 GLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHV 319 (416)
T ss_dssp EEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCGGGSSEE
T ss_pred EEecCHHHHHHHHHHHhhCCEEEEECCCccccCchHHHHHHHHHHHHHhhccCCCEEEEcCcHHHHHHHHcCCCCCccee
Confidence 99999999999999999999999999999999999999999999999997655789999999999999999999999999
Q ss_pred ecchhhHHHhhcCCCCchhhcccccCC
Q 011942 445 STGGGASLELLEGKELPGVVALDEATP 471 (474)
Q Consensus 445 STGGGA~Le~LeGk~LPgv~aL~~~~~ 471 (474)
||||||||||||||+||||++|+++++
T Consensus 320 STGGGA~LE~LEGk~LPgV~aL~~~~~ 346 (416)
T 1fw8_A 320 STGGGASLELLEGKELPGVAFLSEKKS 346 (416)
T ss_dssp CSCSHHHHHHHTTCCCHHHHTSCSSCS
T ss_pred ccccceehHhhcCCCChHHHHHHhccc
Confidence 999999999999999999999998764
No 13
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=99.83 E-value=5.3e-21 Score=198.08 Aligned_cols=64 Identities=50% Similarity=0.826 Sum_probs=59.6
Q ss_pred ccCccCCCCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCe-EEEEecCCCCCCC
Q 011942 75 VGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGV 139 (474)
Q Consensus 75 i~~l~d~dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~ 139 (474)
..+|+|+|++|||||+||||||||++ |+|+||+||++++||||||+++||| |||+||||||+|+
T Consensus 350 k~TIdD~d~~gk~vl~RvD~NvP~~~-g~i~d~~Ri~~~~pti~~l~~~gak~vvl~sH~grp~g~ 414 (416)
T 1fw8_A 350 KLSVQDLDLKDKRVFIRVDFNVPLDG-KKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGE 414 (416)
T ss_dssp SCBGGGSCCTTCEEEEECCCCCCBSS-SSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSS
T ss_pred cccccccccccccceeccccccCccC-CcccchHHHHHHhHHHHHHHHCCCceEEEeccCCCCCCC
Confidence 46778889999999999999999984 8999999999999999999999998 8999999999874
No 14
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=73.61 E-value=11 Score=37.38 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=49.6
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKv-VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
++|+++.|+++|..| .+++|-.||.|...+..-.|+. .+.+-.|.||.-..+.-.++..+.++++++-=+++.-.-|+
T Consensus 14 a~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~-~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i 92 (314)
T 3tqq_A 14 AVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVK-EIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLI 92 (314)
T ss_dssp GHHHHHHHHHSSSEEEEEECCCC----------CCHHH-HHHHHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHH-HHHHHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcCcccc
Confidence 679999999999985 5788889998643333334544 44555788876544554566777777777655555555566
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.+++
T Consensus 93 lp~~ 96 (314)
T 3tqq_A 93 LPKK 96 (314)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 6655
No 15
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=67.49 E-value=18 Score=35.97 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=48.6
Q ss_pred hhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV-L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
+.|+++.|+++|..|+ ++++-.||.|...+..-.|+.+ +.+-.|.||.-..+.-.++..+.++++++-=+++.-.-|+
T Consensus 15 a~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~-~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 93 (314)
T 1fmt_A 15 AARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKV-LAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLI 93 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHH-HHHHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHH-HHHHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEeecccc
Confidence 5799999999999864 7888788876434444456554 4455688885433433555666666665544444444455
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.+++
T Consensus 94 lp~~ 97 (314)
T 1fmt_A 94 LPKA 97 (314)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5544
No 16
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=67.39 E-value=15 Score=36.63 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEeccc
Q 011942 112 AAVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190 (474)
Q Consensus 112 a~lpTIk~L~~~gaKvV-L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlR 190 (474)
=+.|+++.|+++|..|+ ++++-.||.|...+..-.|+. .+.+-+|.||.-..+.-.++..+.++++++-=+++.-.-|
T Consensus 18 fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~-~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 18 FAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVK-TLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHHHHTSSSEEEEEECCCC---------CCCHHH-HHHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHH-HHHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeCccc
Confidence 36799999999999965 788889998643333334544 4555678888544444455666666666654444444555
Q ss_pred Ccccc
Q 011942 191 FYKEE 195 (474)
Q Consensus 191 F~~eE 195 (474)
+.+++
T Consensus 97 ilp~~ 101 (318)
T 3q0i_A 97 LLPKV 101 (318)
T ss_dssp CCCHH
T ss_pred cCCHH
Confidence 55544
No 17
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=67.38 E-value=11 Score=37.71 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=50.5
Q ss_pred hhHHHHHHHHCCCeEE-EEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKVI-LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKvV-L~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
++|+++.|+++|..|+ +++|-.||.|...++.-.|+.+ +.+-+|.||.-..+.-.++..+.++++++-=+++.-.-|+
T Consensus 16 a~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~-~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 94 (317)
T 3rfo_A 16 SVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKV-EAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQI 94 (317)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHH-HHHHTTCCEECCSCTTSHHHHHHHHHHCCSEEEESSCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHH-HHHHcCCCEEccccCCCHHHHHHHHhcCCCEEEEcCchhh
Confidence 6799999999999854 7888888877434444445544 4455688876544444555555555555433343334455
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.+++
T Consensus 95 lp~~ 98 (317)
T 3rfo_A 95 VPNE 98 (317)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 4433
No 18
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=61.97 E-value=26 Score=34.58 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=49.1
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKv-VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
+.|+++.|+++|..| .++++-.||.| +..-.|+.+ +.+-.|.||...++.-.++..+.++++++-=+++.-.-|+
T Consensus 12 a~~~L~~L~~~~~~i~~Vvt~~d~~~g---~~~~~~v~~-~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~i 87 (305)
T 2bln_A 12 GCLGIEALLAAGYEISAIFTHTDNPGE---KAFYGSVAR-LAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHL 87 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCC---------CCCCHHH-HHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEEESCCSC
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCCCC---CcCccHHHH-HHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEEeccccc
Confidence 578999999999995 57788777766 233334443 4455699988766655566666777776644444455566
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.+++
T Consensus 88 lp~~ 91 (305)
T 2bln_A 88 IYDE 91 (305)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 6555
No 19
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=58.50 E-value=47 Score=32.35 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=92.9
Q ss_pred hhHhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCC-C-c-
Q 011942 108 TRIRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPE-G-G- 182 (474)
Q Consensus 108 ~RI~a~lpTIk~L~~~--gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~-G-e- 182 (474)
.+++..+..++.+.++ ...+|+|+.+. | -..+.++.+++.+.+. |.+-..++|+--++..+.++.++. | +
T Consensus 79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n-~---v~~~g~~~f~~~~~~a-GvdGvIipDlp~ee~~~~~~~~~~~gl~~ 153 (271)
T 3nav_A 79 TTPDICFELIAQIRARNPETPIGLLMYAN-L---VYARGIDDFYQRCQKA-GVDSVLIADVPTNESQPFVAAAEKFGIQP 153 (271)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEEEECHH-H---HHHTCHHHHHHHHHHH-TCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCc-H---HHHHhHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHHcCCeE
Confidence 3455677788888775 46689997665 1 1234567777777665 777777788765555544444432 2 2
Q ss_pred EEEEecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCe
Q 011942 183 VLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPF 262 (474)
Q Consensus 183 VlLLENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~ 262 (474)
|.|. ... ..++..+++++.++-||- --+...++|...-+ ..-++..++.+.+. .+.|.
T Consensus 154 I~lv------ap~--t~~eri~~i~~~~~gfiY------~vs~~GvTG~~~~~-----~~~~~~~v~~vr~~---~~~Pv 211 (271)
T 3nav_A 154 IFIA------PPT--ASDETLRAVAQLGKGYTY------LLSRAGVTGAETKA-----NMPVHALLERLQQF---DAPPA 211 (271)
T ss_dssp EEEE------CTT--CCHHHHHHHHHHCCSCEE------ECCCC--------C-----CHHHHHHHHHHHHT---TCCCE
T ss_pred EEEE------CCC--CCHHHHHHHHHHCCCeEE------EEeccCCCCcccCC-----chhHHHHHHHHHHh---cCCCE
Confidence 3333 111 134677888888875551 00122233333211 11234444444443 35674
Q ss_pred EEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHH
Q 011942 263 AAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYK 300 (474)
Q Consensus 263 vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~ 300 (474)
+ + |--|++.-.+-+.+...+|.+++|.++...+-.
T Consensus 212 ~-v--GfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~ 246 (271)
T 3nav_A 212 L-L--GFGISEPAQVKQAIEAGAAGAISGSAVVKIIET 246 (271)
T ss_dssp E-E--CSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHH
T ss_pred E-E--ECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 3 3 555777777766777789999999999877643
No 20
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=50.87 E-value=63 Score=30.76 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=94.3
Q ss_pred hHhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEE
Q 011942 109 RIRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186 (474)
Q Consensus 109 RI~a~lpTIk~L~~~--gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLL 186 (474)
+++..+..++.+.++ +..+++|+-+. | -..+.++..++.+.+. |.+-..++|+-.++..+.++.++.-.+
T Consensus 77 ~~~~~~~~v~~ir~~~~~~Pi~~m~y~n-~---v~~~g~~~f~~~~~~a-G~dgvii~dl~~ee~~~~~~~~~~~gl--- 148 (262)
T 2ekc_A 77 RFEDVLELSETLRKEFPDIPFLLMTYYN-P---IFRIGLEKFCRLSREK-GIDGFIVPDLPPEEAEELKAVMKKYVL--- 148 (262)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEECCHH-H---HHHHCHHHHHHHHHHT-TCCEEECTTCCHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEecCc-H---HHHhhHHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHHHHHcCC---
Confidence 444566778888776 66788875443 1 1223455666665553 777566677766666666555543321
Q ss_pred ecccCccccccCcHHHHHHHhhcCCEEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCCCeEEEe
Q 011942 187 ENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIV 266 (474)
Q Consensus 187 ENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~vaIl 266 (474)
+.+.+... ..+.+..+.++..++-|+ -|-+...++|... + ..+.-+...++.+.+.. +-| +++=
T Consensus 149 ~~i~l~~p--~t~~~rl~~ia~~a~gfi------y~vs~~g~TG~~~---~-~~~~~~~~~v~~vr~~~---~~p-v~vG 212 (262)
T 2ekc_A 149 SFVPLGAP--TSTRKRIKLICEAADEMT------YFVSVTGTTGARE---K-LPYERIKKKVEEYRELC---DKP-VVVG 212 (262)
T ss_dssp EECCEECT--TCCHHHHHHHHHHCSSCE------EEESSCC-------------CHHHHHHHHHHHHHC---CSC-EEEE
T ss_pred cEEEEeCC--CCCHHHHHHHHHhCCCCE------EEEecCCccCCCC---C-cCcccHHHHHHHHHhhc---CCC-EEEe
Confidence 22222221 134456677777765332 1222233334332 1 11122344555555543 445 4554
Q ss_pred cCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhh
Q 011942 267 GGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKA 328 (474)
Q Consensus 267 GGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~ 328 (474)
|| |++.=.+-+ +..-+|.+++|.++-..+- ++..+.++++++..++
T Consensus 213 ~G--I~t~e~~~~-~~~gADgvIVGSai~~~~~-------------~~~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 213 FG--VSKKEHARE-IGSFADGVVVGSALVKLAG-------------QKKIEDLGNLVKELKE 258 (262)
T ss_dssp SS--CCSHHHHHH-HHTTSSEEEECHHHHHHHH-------------TTCHHHHHHHHHHHHH
T ss_pred CC--CCCHHHHHH-HHcCCCEEEECHHHHhhhh-------------hhhHHHHHHHHHHHHH
Confidence 44 555555555 6667999999999876641 1235667777766654
No 21
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=45.00 E-value=20 Score=30.08 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCCC
Q 011942 111 RAAVPTIKHLIQNGAKVILSSHLGRPK 137 (474)
Q Consensus 111 ~a~lpTIk~L~~~gaKvVL~SHlGRPk 137 (474)
.....+|+.|.++|.+++++| |||.
T Consensus 27 ~~~~~~l~~l~~~Gi~~~iaT--GR~~ 51 (126)
T 1xpj_A 27 LDVIEQLREYHQLGFEIVIST--ARNM 51 (126)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--CTTT
T ss_pred HHHHHHHHHHHhCCCeEEEEe--CCCh
Confidence 457788999999999999999 8874
No 22
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=45.00 E-value=1.1e+02 Score=29.58 Aligned_cols=160 Identities=11% Similarity=0.088 Sum_probs=89.8
Q ss_pred hhHhhhhHHHHHHHHC--CCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCC-C-c-
Q 011942 108 TRIRAAVPTIKHLIQN--GAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPE-G-G- 182 (474)
Q Consensus 108 ~RI~a~lpTIk~L~~~--gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~-G-e- 182 (474)
.+++..+..++.+.++ ...+++|+.+. | -..+.++.+++.+.+. |.+-..++|.--++..+.++.++. | +
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~n-p---v~~~g~e~f~~~~~~a-Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYAN-L---VFANGIDEFYTKAQAA-GVDSVLIADVPVEESAPFSKAAKAHGIAP 151 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHH-H---HHHHCHHHHHHHHHHH-TCCEEEETTSCGGGCHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCc-H---HHHhhHHHHHHHHHHc-CCCEEEeCCCCHhhHHHHHHHHHHcCCeE
Confidence 3455668888988875 45688996654 1 1234567777777775 788777788765555555444433 2 2
Q ss_pred EEEEecccCccccccCcHHHHHHHhhcCC--EEeecccccccccCccccccccccCccchhhhHHHHHHHHHhhhcCCCC
Q 011942 183 VLLLENVRFYKEEEKNDPEFAKKLASLAD--LYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKR 260 (474)
Q Consensus 183 VlLLENlRF~~eE~~nd~~fak~LA~l~D--iyVNDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~~~p~r 260 (474)
|.++ ... ...+..+.+++.++ +|+-..- -++|...-++ .-+..-++.+.+. .+.
T Consensus 152 i~li------aP~--t~~eri~~i~~~~~gfvY~vS~~--------GvTG~~~~~~-----~~~~~~v~~vr~~---~~~ 207 (267)
T 3vnd_A 152 IFIA------PPN--ADADTLKMVSEQGEGYTYLLSRA--------GVTGTESKAG-----EPIENILTQLAEF---NAP 207 (267)
T ss_dssp ECEE------CTT--CCHHHHHHHHHHCCSCEEESCCC--------CCC-------------CHHHHHHHHHTT---TCC
T ss_pred EEEE------CCC--CCHHHHHHHHHhCCCcEEEEecC--------CCCCCccCCc-----HHHHHHHHHHHHh---cCC
Confidence 2232 111 12467777887787 5552111 1122221011 1133344444443 345
Q ss_pred CeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHH
Q 011942 261 PFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFY 299 (474)
Q Consensus 261 P~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL 299 (474)
|.+ + |.-|++.=.+-+.+..-+|.+++|-++-..+-
T Consensus 208 pv~-v--GfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~ 243 (267)
T 3vnd_A 208 PPL-L--GFGIAEPEQVRAAIKAGAAGAISGSAVVKIIE 243 (267)
T ss_dssp CEE-E--CSSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred CEE-E--ECCcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 643 3 44577777776567778999999998866553
No 23
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=35.74 E-value=23 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=26.0
Q ss_pred CccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 102 QNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 102 g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
|.++++.++.+...+|+.|.++|.+++++| |||
T Consensus 11 GTLl~~~~~~~~~~~l~~l~~~g~~~~i~T--gr~ 43 (249)
T 2zos_A 11 KTLIPGYEPDPAKPIIEELKDMGFEIIFNS--SKT 43 (249)
T ss_dssp TTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC
T ss_pred CCccCCCCcHHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 555544456667889999999999999998 886
No 24
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=34.68 E-value=27 Score=31.90 Aligned_cols=35 Identities=6% Similarity=0.109 Sum_probs=26.1
Q ss_pred CccCcchh-HhhhhHHHHHHHHCCCeEEEEecC-CCC
Q 011942 102 QNITDDTR-IRAAVPTIKHLIQNGAKVILSSHL-GRP 136 (474)
Q Consensus 102 g~I~Dd~R-I~a~lpTIk~L~~~gaKvVL~SHl-GRP 136 (474)
|.++|+.+ +..+..+|+.|.++|.+++++|-. |||
T Consensus 26 GTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~ 62 (271)
T 1vjr_A 26 GTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLG 62 (271)
T ss_dssp TTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSC
T ss_pred CcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 55555544 345667899999999999999976 665
No 25
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=33.73 E-value=1.5e+02 Score=29.02 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEE
Q 011942 112 AAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186 (474)
Q Consensus 112 a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLL 186 (474)
+.++.|-..+.+|-+|+++|.-|-|.-++ .-..+++.+.+ -|.+|..+|-.-.-.+.-+...+...++.++
T Consensus 76 ~~~~~li~~l~~G~~Va~lsdaGdP~i~~---~g~~lv~~~~~-~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~ 146 (296)
T 3kwp_A 76 ERIPQLIAKLKQGMQIAQVSDAGMPSISD---PGHELVNACID-AHIPVVPLPGANAGLTALIASGLAPQPFYFY 146 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSBCTTSSH---HHHHHHHHHHH-TTCCEEECCCCCHHHHHHHHHSSCCSSEEEE
T ss_pred hHhHHHHHHHhcCceEEEeccCCCCCCCC---CchHHHHHHHH-cCCCeeeCCCcccchHHHHhccCCCCceeEE
Confidence 34456666667899999999999883221 11122333332 2788888887765555555666766665543
No 26
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=33.38 E-value=32 Score=32.08 Aligned_cols=62 Identities=15% Similarity=-0.017 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCChhhhHHHHHHHh---CCceeeccCCCC-HHHHHHHhcCCCCcEEEEecccCccc
Q 011942 133 LGRPKGVTPKFSLAPLVPRLSELL---GIQVVKADDCIG-PEVEKLVASLPEGGVLLLENVRFYKE 194 (474)
Q Consensus 133 lGRPkg~~~~~SL~pva~~Ls~lL---~~~V~f~~d~ig-~~v~~~i~~l~~GeVlLLENlRF~~e 194 (474)
||+|......-++...+..+-++- ..++.|+|--.. ......+..|++|.+|+++|+-+.+.
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DNv~~r~~ 160 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDDYSQRRW 160 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETTGGGCSS
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeCCcCCcc
Confidence 567765433334433332221222 247888865432 45666789999999999999755443
No 27
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=33.27 E-value=34 Score=31.38 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=26.3
Q ss_pred CCccCcchh--H-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 101 NQNITDDTR--I-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 101 ~g~I~Dd~R--I-~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
+|.++|+.+ | .+....|+.|.++|.+++++| |||
T Consensus 10 DGTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~ 46 (261)
T 2rbk_A 10 DGTLVSFETHRIPSSTIEALEAAHAKGLKIFIAT--GRP 46 (261)
T ss_dssp BTTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEC--CCh
Confidence 367776654 3 566778999999999999876 887
No 28
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=32.88 E-value=19 Score=33.79 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=28.0
Q ss_pred cChhHHHHHHHHhccCCeEEEeCcccccCccCchHHHHHHHHHHHhhcCCCcEEEEecchHH
Q 011942 368 IGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSV 429 (474)
Q Consensus 368 IGp~Ti~~~~~~i~~aktI~WNGPmGvfE~~~Fa~GT~~i~~aia~~~~~ga~sIvGGGDt~ 429 (474)
+-|.......+.+++++.||.-||.|. -+||. ++.|++.-+ +.-+--||-+
T Consensus 14 ~~p~~~~~~~~~~~k~kiI~llGpPGs------GKgTq--a~~L~~~~g---~~hIstGdll 64 (217)
T 3umf_A 14 LVPRGSHMTDQKLAKAKVIFVLGGPGS------GKGTQ--CEKLVQKFH---FNHLSSGDLL 64 (217)
T ss_dssp ----------CCTTSCEEEEEECCTTC------CHHHH--HHHHHHHHC---CEEECHHHHH
T ss_pred cCCCCccccchhccCCcEEEEECCCCC------CHHHH--HHHHHHHHC---CceEcHHHHH
Confidence 345556666778899999999999987 56664 566665432 4444455544
No 29
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=32.12 E-value=1e+02 Score=32.85 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=51.5
Q ss_pred hhHHHHHHHHCCCeE-EEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccC
Q 011942 113 AVPTIKHLIQNGAKV-ILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRF 191 (474)
Q Consensus 113 ~lpTIk~L~~~gaKv-VL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENlRF 191 (474)
+.|+++.|+++|+.| .++|+-.+|.+ +..-.|+. .+.+-.|.||...++.-.++..+.++++++-=|++.--.|+
T Consensus 12 ~~~~l~~l~~~~~~i~~v~t~~~~~~~---~~~~~~~~-~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~d~iv~~~~~~i 87 (660)
T 1z7e_A 12 GCLGIEALLAAGYEISAIFTHTDNPGE---KAFYGSVA-RLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHL 87 (660)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCC-----------CCHH-HHHHHHTCCEECCSCTTSHHHHHHHHHHCCSEEEEESCCSC
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCcc---CcCccHHH-HHHHHcCCCEeccCCCCcHHHHHHHHhcCCCEEEEcCcccc
Confidence 478899999999995 57787777765 33333443 34456699998776666677778888887755555556677
Q ss_pred cccc
Q 011942 192 YKEE 195 (474)
Q Consensus 192 ~~eE 195 (474)
.+++
T Consensus 88 l~~~ 91 (660)
T 1z7e_A 88 IYDE 91 (660)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 7766
No 30
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=31.47 E-value=74 Score=30.04 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCC
Q 011942 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGR 135 (474)
Q Consensus 84 ~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGR 135 (474)
+-|||+|.+=-++=.++++.-.|..+|++-...|+.|.++|.+|||++-=|.
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~ 59 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 4589999987777655444456889999999999999999999887754343
No 31
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.99 E-value=3e+02 Score=24.81 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEecCCcccchHHHHHHHHH-hcCeEEEchH
Q 011942 244 LQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLE-TCDILLLGGG 293 (474)
Q Consensus 244 mekEl~~L~~~~~~p~rP~vaIlGGaKvsdKI~vi~~Ll~-kvD~lliGG~ 293 (474)
+..=++.+.+....-.--++..-.+.....-...+++++. ++|.||+.+.
T Consensus 20 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 20 DLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3333444555444333333344444455555788888886 5999998654
No 32
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=30.34 E-value=31 Score=32.37 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=24.6
Q ss_pred CccCcc-hh-HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 102 QNITDD-TR-IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 102 g~I~Dd-~R-I~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
|.++++ .+ ..+....|+.|.++|.+++++| |||
T Consensus 18 GTLl~~~~~~~~~~~~~l~~l~~~G~~~~iaT--GR~ 52 (275)
T 1xvi_A 18 GTLLDSHSYDWQPAAPWLTRLREANVPVILCS--SKT 52 (275)
T ss_dssp TTTSCSSCCSCCTTHHHHHHHHHTTCCEEEEC--SSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHCCCeEEEEc--CCC
Confidence 455542 22 2556788999999999999998 886
No 33
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.95 E-value=35 Score=32.31 Aligned_cols=36 Identities=19% Similarity=0.502 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCcEEEEecchHHHHHHHcCCCCCc
Q 011942 406 AIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVM 441 (474)
Q Consensus 406 ~i~~aia~~~~~ga~sIvGGGDt~aAv~~~g~~d~~ 441 (474)
++-+.+.++.+.|+..||||+-++..++++|+..-+
T Consensus 142 e~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vl 177 (225)
T 2pju_A 142 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIF 177 (225)
T ss_dssp HHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEE
Confidence 334445555566899999999999999999986433
No 34
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=29.75 E-value=30 Score=30.49 Aligned_cols=25 Identities=44% Similarity=0.385 Sum_probs=21.3
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 110 IRAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
+..++.+|+.|.++|.+++|+| |||
T Consensus 26 ~~~~~~al~~l~~~G~~iii~T--gR~ 50 (142)
T 2obb_A 26 IPFAVETLKLLQQEKHRLILWS--VRE 50 (142)
T ss_dssp CTTHHHHHHHHHHTTCEEEECC--SCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEe--CCC
Confidence 4578899999999999999988 555
No 35
>3h35_A Uncharacterized protein ABO_0056; ubiquitous hydrocarbon degrading BA structural genomics, PSI-2, protein structure initiative; HET: MSE SRT; 2.15A {Alcanivorax borkumensis}
Probab=29.07 E-value=20 Score=33.32 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=33.1
Q ss_pred EecccCccccccCcHHHHHHHhhcCCEEeecccccccccCcccccc-ccccCccchhhhHHHHHHHHHhhhcCCCCCeEE
Q 011942 186 LENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV-TKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAA 264 (474)
Q Consensus 186 LENlRF~~eE~~nd~~fak~LA~l~DiyVNDAFgtaHR~haS~vGi-~~~l~~s~aG~LmekEl~~L~~~~~~p~rP~va 264 (474)
||.+||+-||+.-...|++-|++-.|.. .+.+|+|.+.+ -+-|.| .|-..|..+.....-|.+-
T Consensus 11 lE~~~y~~~~~~l~~m~a~LLa~s~d~~-------~~~~hp~f~~i~i~qLsp--------deA~iL~~l~~~~~~P~v~ 75 (185)
T 3h35_A 11 LEALHHPGELEGSPQNLHQLLGVSIEQS-------VPQAQTMLVERHLASLTG--------DEARLLAALSDGSAFALLT 75 (185)
T ss_dssp ----------------------CCCSSC-------CCCHHHHHHHHHTTTSCH--------HHHHHHHHHTTSCCEEEEE
T ss_pred HHHhcCcccchHHHHHHHHHHHHHhccC-------cccccHHHHHHHHHhcCh--------HHHHHHHHHhcCCCccEEE
Confidence 7999999888877888999999887763 35678888887 555544 6777888777788899999
Q ss_pred Eec
Q 011942 265 IVG 267 (474)
Q Consensus 265 IlG 267 (474)
+..
T Consensus 76 v~~ 78 (185)
T 3h35_A 76 LYS 78 (185)
T ss_dssp EES
T ss_pred EEe
Confidence 864
No 36
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=29.06 E-value=1.8e+02 Score=26.35 Aligned_cols=69 Identities=22% Similarity=0.222 Sum_probs=53.2
Q ss_pred CCCCeEEEecCCcccchHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccCchHHHHHHHHHHhhCCC
Q 011942 258 PKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGV 331 (474)
Q Consensus 258 p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~lliGG~ma~tFL~A~G~~iG~SlvE~~~~~~a~~il~~a~~~g~ 331 (474)
...-+=+|.|=..|..=|.+-+.++++-.++++.|-=|-.|-+.+|++. +.-.-+.+++..++.++..+
T Consensus 72 ~t~~~GAVa~v~~vknPI~vAr~Vme~t~HvlLvG~GA~~fA~~~G~~~-----~~l~t~~~~~~~~~~~~~~~ 140 (162)
T 1apy_A 72 TTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFIN-----EDLSTSASQALHSDWLARNC 140 (162)
T ss_dssp TTCCEEEEEEECSCSCHHHHHHHHHHHBSCSEEEHHHHHHHHHHTTCCC-----CCCCCHHHHHHHHHHHHTTS
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHhcCCCeEEEcHHHHHHHHHcCCCc-----cccCCHHHHHHHHHHHHhcc
Confidence 3445566666666888899999999999999999999999999999986 33335667777777777543
No 37
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=28.83 E-value=1.2e+02 Score=28.70 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=38.2
Q ss_pred HHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHH--HHhCCceeeccCCCCHHHHHH-HhcCCCCcEEEEecc
Q 011942 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLS--ELLGIQVVKADDCIGPEVEKL-VASLPEGGVLLLENV 189 (474)
Q Consensus 116 TIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls--~lL~~~V~f~~d~ig~~v~~~-i~~l~~GeVlLLENl 189 (474)
++..|.+-||+-||+-|--|.... ..+.+.+. .-+|..+.+ |+|+..+.. +..+. -+|+--||+
T Consensus 80 s~~~l~~~Ga~~VllghseRR~~~------~e~~~k~~~A~~~GL~~iv---cVge~~e~~~~~~~~-~~iIayep~ 146 (225)
T 1hg3_A 80 LPEAVKEAGAVGTLLNHSENRMIL------ADLEAAIRRAEEVGLMTMV---CSNNPAVSAAVAALN-PDYVAVEPP 146 (225)
T ss_dssp CHHHHHHTTCCEEEESCGGGCCBH------HHHHHHHHHHHHHTCEEEE---EESSHHHHHHHHTTC-CSEEEECCT
T ss_pred cHHHHHHcCCCEEEECcchhcCCH------HHHHHHHHHHHHCCCEEEE---EeCCHHHHHHHhcCC-CCEEEEeCh
Confidence 567888899999999999876432 11333333 234776665 667655432 23332 245555554
No 38
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=27.87 E-value=45 Score=31.06 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.4
Q ss_pred CccCcch--hH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 102 QNITDDT--RI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 102 g~I~Dd~--RI-~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
|.++|+. +| .+...+|+.|.++|.+++++| |||
T Consensus 30 GTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaT--GR~ 65 (283)
T 3dao_A 30 GTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCS--GRQ 65 (283)
T ss_dssp TTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 5555543 24 567789999999999999997 887
No 39
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=27.63 E-value=19 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=26.7
Q ss_pred ecccccccccCccccccccccCccchhhhHHHHHHHHHhhh
Q 011942 215 NDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAV 255 (474)
Q Consensus 215 NDAFgtaHR~haS~vGi~~~l~~s~aG~LmekEl~~L~~~~ 255 (474)
||.||. --+.|.||+.|+. .| =.-+.|+|+.|..++
T Consensus 12 d~rFGs---YCPTTCGiadfL~-~Y-q~~vd~dL~~lE~~L 47 (48)
T 1jy2_P 12 DERFGS---YCPTTCGIADFLN-NY-QTSVDKDLRTLEGIL 47 (48)
T ss_dssp BTTTBC---EEECHHHHHHHHH-HH-HHHHHHHHHHHHHHH
T ss_pred cccccC---cCCccccHHHHhc-cc-ccchhhHHHHHHHHh
Confidence 788885 4578899999883 33 345778999998775
No 40
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=27.14 E-value=1e+02 Score=30.08 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCC
Q 011942 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (474)
Q Consensus 84 ~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlG 134 (474)
+-|||+|.+=-++=.+++ .-+|..+|++....|+.|.++|.+|||++==|
T Consensus 49 ~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG 98 (281)
T 3nwy_A 49 GYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGG 98 (281)
T ss_dssp CCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred cCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCh
Confidence 468999998877755443 33688999999999999999999988877434
No 41
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=27.13 E-value=54 Score=29.82 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=33.2
Q ss_pred CccCcchh-HhhhhHHHHHHHHCCCeEEEEec-CCCCCCCCCCCChhhhHHHHHHHhCCc
Q 011942 102 QNITDDTR-IRAAVPTIKHLIQNGAKVILSSH-LGRPKGVTPKFSLAPLVPRLSELLGIQ 159 (474)
Q Consensus 102 g~I~Dd~R-I~a~lpTIk~L~~~gaKvVL~SH-lGRPkg~~~~~SL~pva~~Ls~lL~~~ 159 (474)
|.++|+.+ +.++...|+.|.++|.+|+|+|= -+|| ...+.++|.+ +|.+
T Consensus 15 GTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~--------~~~~~~~l~~-lg~~ 65 (266)
T 3pdw_A 15 GTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRT--------PKQVADKLVS-FDIP 65 (266)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSC--------HHHHHHHHHH-TTCC
T ss_pred CceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCC--------HHHHHHHHHH-cCCC
Confidence 66666544 46778899999999999999973 3333 4455566654 3544
No 42
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=26.30 E-value=48 Score=30.13 Aligned_cols=34 Identities=15% Similarity=0.552 Sum_probs=25.2
Q ss_pred CccCc-c-hhH-hhhhHHHHHHHHCCCeEEEEecCCCCC
Q 011942 102 QNITD-D-TRI-RAAVPTIKHLIQNGAKVILSSHLGRPK 137 (474)
Q Consensus 102 g~I~D-d-~RI-~a~lpTIk~L~~~gaKvVL~SHlGRPk 137 (474)
|.++| + .+| .+...+|+.|.++|.+++++| |||.
T Consensus 21 GTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~~ 57 (268)
T 3r4c_A 21 GTLLSFETHKVSQSSIDALKKVHDSGIKIVIAT--GRAA 57 (268)
T ss_dssp TTTBCTTTCSCCHHHHHHHHHHHHTTCEEEEEC--SSCT
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCCh
Confidence 56666 2 344 356679999999999999986 8874
No 43
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=25.56 E-value=79 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.9
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCC
Q 011942 110 IRAAVPTIKHLIQNGAKVILSSHLGR 135 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaKvVL~SHlGR 135 (474)
...+.++|++|.++|.++.|+|...+
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSG 54 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCc
Confidence 34577899999999999999997664
No 44
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=25.37 E-value=38 Score=31.06 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=20.9
Q ss_pred hH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 109 RI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 109 RI-~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
+| .+....|+.|.++| +++++| |||
T Consensus 23 ~i~~~~~~al~~l~~~g-~v~iaT--GR~ 48 (239)
T 1u02_A 23 YADAGLLSLISDLKERF-DTYIVT--GRS 48 (239)
T ss_dssp CCCHHHHHHHHHHHHHS-EEEEEC--SSC
T ss_pred CCCHHHHHHHHHHhcCC-CEEEEe--CCC
Confidence 45 45778899999999 999998 886
No 45
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=24.83 E-value=1.1e+02 Score=28.66 Aligned_cols=51 Identities=27% Similarity=0.225 Sum_probs=38.9
Q ss_pred CCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCC
Q 011942 84 KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134 (474)
Q Consensus 84 ~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlG 134 (474)
+-|+|+|.+=-++=.++++.-+|..+|++....|..|.+.|.+|||++-=|
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG 56 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGG 56 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 458999998777655432234688999999999999999999988765433
No 46
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=23.71 E-value=1.9e+02 Score=27.87 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=73.0
Q ss_pred eEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCC
Q 011942 87 KVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDC 166 (474)
Q Consensus 87 ~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ 166 (474)
+|++|+|-+.-+. .| =|.+++ ||-..+. .|..+.+.. + + . +-+.+|.+|...+.-
T Consensus 2 ki~ir~Da~~~IG-~G------HvmRcl-~LA~~l~---~v~F~~~~~-~-~--~----------~~~~~g~~v~~l~~~ 56 (282)
T 3hbm_A 2 KVLFRSDSSSQIG-FG------HIKRDL-VLAKQYS---DVSFACLPL-E-G--S----------LIDEIPYPVYELSSE 56 (282)
T ss_dssp CEEEEECCBTTTB-SH------HHHHHH-HHHTTCS---SEEEEECCC-T-T--C----------CGGGCCSCEEECSSS
T ss_pred EEEEEEecCCCcc-cc------HHHHHH-HHHHHHH---hCEEEEecC-c-H--h----------HHHHCCCeEEEcCcc
Confidence 5899999998774 35 345555 3333222 566665432 1 1 1 011126666665421
Q ss_pred CCHHHHHHHhcCCCCcEEEEecccCccccccCcHHHHHHHhh----------------cCCEEeecccccccccCcccc-
Q 011942 167 IGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLAS----------------LADLYVNDAFGTAHRAHASTE- 229 (474)
Q Consensus 167 ig~~v~~~i~~l~~GeVlLLENlRF~~eE~~nd~~fak~LA~----------------l~DiyVNDAFgtaHR~haS~v- 229 (474)
--++..+.++.+ +-|+++++.-.+-.+ +-+.|.+ .||+-+|=.++.- .+-+
T Consensus 57 d~~~~~~~l~~~-~~d~lIvD~Y~~~~~-------~~~~lk~~~~~~i~~iDD~~~~~~~Dllin~~~~~~----~~~Y~ 124 (282)
T 3hbm_A 57 SIYELINLIKEE-KFELLIIDHYGISVD-------DEKLIKLETGVKILSFDDEIKPHHCDILLNVNAYAK----ASDYE 124 (282)
T ss_dssp CHHHHHHHHHHH-TCSEEEEECTTCCHH-------HHHHHHHHHCCEEEEECSSCCCCCCSEEEECSTTCC----GGGGT
T ss_pred CHHHHHHHHHhC-CCCEEEEECCCCCHH-------HHHHHHHhcCcEEEEEecCCCcccCCEEEeCCcccc----hhhcc
Confidence 112333444443 447888888876433 2233322 3566666554431 1111
Q ss_pred -ccccccCccchhh---hHHHHHHHHHhhhcCCCCCeEEE-ecCCcccc
Q 011942 230 -GVTKYLKPSVAGF---LLQKELDYLVGAVSSPKRPFAAI-VGGSKVSS 273 (474)
Q Consensus 230 -Gi~~~l~~s~aG~---LmekEl~~L~~~~~~p~rP~vaI-lGGaKvsd 273 (474)
.++... .-..|. ++.+|.....+. ..++.|.+.| +||+-...
T Consensus 125 ~~~p~~~-~~l~G~~Y~~lR~eF~~~~~~-~r~~~~~ILv~~GG~d~~~ 171 (282)
T 3hbm_A 125 GLVPFKC-EVRCGFSYALIREEFYQEAKE-NRKKKYDFFICMGGTDIKN 171 (282)
T ss_dssp TTCC-CC-EEEESGGGCCCCHHHHHHTTC-CCCCCEEEEEECCSCCTTC
T ss_pred ccCCCCC-eEeeCCcccccCHHHHHhhhh-ccccCCeEEEEECCCchhh
Confidence 011100 124677 888887765543 2233455554 57764443
No 47
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=23.37 E-value=62 Score=30.22 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 111 RAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 111 ~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
.+....|+.|.++|.+++++| |||
T Consensus 25 ~~~~~aL~~l~~~Gi~vviaT--GR~ 48 (282)
T 1rkq_A 25 PAVKNAIAAARARGVNVVLTT--GRP 48 (282)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred HHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 345678999999999999999 887
No 48
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=23.32 E-value=1.3e+02 Score=29.74 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHCCCe-EEEEecCCCCCCCCCCCChhhhHHHHHHHh-CCceeec
Q 011942 111 RAAVPTIKHLIQNGAK-VILSSHLGRPKGVTPKFSLAPLVPRLSELL-GIQVVKA 163 (474)
Q Consensus 111 ~a~lpTIk~L~~~gaK-vVL~SHlGRPkg~~~~~SL~pva~~Ls~lL-~~~V~f~ 163 (474)
.++-..++.|.++|+. ||+++|+|-...... ...+.-+..|.+.+ |.++.+-
T Consensus 194 ~~~~~~v~~Lk~~g~D~II~l~H~G~~~d~~~-~~~e~~~~~lA~~v~giD~Iig 247 (341)
T 3gve_A 194 ESANETIPKMKAEGADVIIALAHTGIEKQAQS-SGAENAVFDLATKTKGIDAIIS 247 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCCCSSCCC-TTCSSCHHHHHHHCSCCCEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccccc-cccchhHHHHHhcCCCCcEEEE
Confidence 3334455667778998 789999998643211 12233333454333 5665553
No 49
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=22.55 E-value=88 Score=32.23 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=35.4
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEE
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL 129 (474)
+++||||.| +=.-.+++ +||.|=-.+++-|+.|.++|++|.+
T Consensus 315 ~~~~~~v~v---lGlafK~~---~dD~R~sp~~~i~~~L~~~g~~v~~ 356 (450)
T 3gg2_A 315 NVQGRCVAI---WGLSFKPG---TDDMREAPSLVLIEKLLEVGCRVRV 356 (450)
T ss_dssp CCTTCEEEE---ECCSSSTT---CCCCTTCHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCEEEE---EeeeeCCC---CcccccChHHHHHHHHHHCCCEEEE
Confidence 689999998 55555543 7999999999999999999999855
No 50
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=22.39 E-value=1.6e+02 Score=23.78 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=34.1
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeec
Q 011942 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKA 163 (474)
Q Consensus 117 Ik~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~ 163 (474)
+++.-+.++..|++.+.||.. -..+-+..+++++-+..++||-.+
T Consensus 92 ~~~a~~~~~dliV~G~~~~~~--~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 92 LQAARAEKADLIVMGTRGLGA--LGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHTTCSEEEEESSCTTC--CSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCCEEEECCCCCch--hhhhhhccHHHHHHhcCCCCEEEe
Confidence 466777899988888888753 233457788999988889998765
No 51
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=22.24 E-value=59 Score=29.62 Aligned_cols=48 Identities=29% Similarity=0.538 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCCc-EEEEecccCccccccCcHHHHHHHhhc----CC--EEeecccccc
Q 011942 170 EVEKLVASLPEGG-VLLLENVRFYKEEEKNDPEFAKKLASL----AD--LYVNDAFGTA 221 (474)
Q Consensus 170 ~v~~~i~~l~~Ge-VlLLENlRF~~eE~~nd~~fak~LA~l----~D--iyVNDAFgta 221 (474)
+.+...+.+++++ +++|+ -.+++-..++||+.|... .| ++|--++|.+
T Consensus 54 E~~~il~~i~~~~~vI~LD----~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGGa~Gl~ 108 (163)
T 1o6d_A 54 ETEDLTNRILPGSFVMVMD----KRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLN 108 (163)
T ss_dssp HHHHHHTTCCTTCEEEEEE----EEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCC
T ss_pred HHHHHHHhcCCCCEEEEEc----CCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCC
Confidence 4555678888888 78887 234555678999999876 34 4556666654
No 52
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=22.01 E-value=91 Score=32.55 Aligned_cols=64 Identities=31% Similarity=0.499 Sum_probs=45.5
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCcee
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVV 161 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~ 161 (474)
+++||||+| +=.-.+++ +||.|=-.+++-|+.|.++|++|.+. ++.. .+...+.++..+.
T Consensus 330 ~l~g~~V~v---lGlafK~~---tdD~ReSpa~~ii~~L~~~Ga~V~~~---------DP~~-----~~~~~~~~~~~~~ 389 (444)
T 3vtf_A 330 GLRGRHVGV---LGLAFKPN---TDDVRESRGVEVARLLLERGARVYVH---------DPMA-----MEKARAVLGDSVT 389 (444)
T ss_dssp CCTTCEEEE---ECCSSSSS---CCCCTTCHHHHHHHHHHHTTCEEEEE---------CSST-----HHHHHHHHGGGSE
T ss_pred ccCCCEEEE---EeeecCCC---CCccccCcHHHHHHHHHHCCCEEEEE---------CCCC-----ChHHHHhcCCCce
Confidence 589999998 55555543 69999999999999999999998653 2221 1233445566677
Q ss_pred eccC
Q 011942 162 KADD 165 (474)
Q Consensus 162 f~~d 165 (474)
+++|
T Consensus 390 ~~~~ 393 (444)
T 3vtf_A 390 YVED 393 (444)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7655
No 53
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=21.49 E-value=1.4e+02 Score=27.38 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=35.8
Q ss_pred CeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEEe
Q 011942 86 KKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131 (474)
Q Consensus 86 K~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~S 131 (474)
|+++|.+--++=.++++.-.|..++++....|..|.+.|.++||++
T Consensus 8 ~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~ 53 (239)
T 1ybd_A 8 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVV 53 (239)
T ss_dssp SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7888888877754432333577899999999999999999987664
No 54
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=21.27 E-value=92 Score=32.27 Aligned_cols=43 Identities=35% Similarity=0.464 Sum_probs=35.7
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEEE
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILS 130 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL~ 130 (474)
+++||||.| +=.-.+++ +||.|=-.+++-|+.|.++|++|.+.
T Consensus 319 ~~~~~~v~v---lGlafK~~---~dD~ReSp~~~i~~~L~~~g~~v~~~ 361 (446)
T 4a7p_A 319 DVRGKTVGI---LGLTFKPN---TDDMRDAPSLSIIAALQDAGATVKAY 361 (446)
T ss_dssp CCTTCEEEE---ECCSSSTT---SCCCTTCSHHHHHHHHHHTSCEEEEE
T ss_pred cCCCCEEEE---EEEEeCCC---CcccccChHHHHHHHHHHCCCEEEEE
Confidence 689999998 55555543 69999999999999999999998653
No 55
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=21.26 E-value=95 Score=32.26 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=35.0
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEE
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL 129 (474)
+++||||.| +=.-.+++ +||.|=-.+++-|+.|.++|++|.+
T Consensus 325 ~~~~~~v~v---lGlafK~~---~dD~R~Sp~~~i~~~L~~~g~~v~~ 366 (478)
T 2y0c_A 325 DLTGRTFAI---WGLAFKPN---TDDMREAPSRELIAELLSRGARIAA 366 (478)
T ss_dssp CCTTCEEEE---ECCSSSSS---CCCCTTCHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCEEEE---EecccCCC---CCccccChHHHHHHHHHHCCCEEEE
Confidence 589999988 44555543 6999999999999999999999865
No 56
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=21.21 E-value=69 Score=28.84 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=24.0
Q ss_pred CccCcc-hhH-hhhhHHHHHHHHCCCeEEEEecCCCC
Q 011942 102 QNITDD-TRI-RAAVPTIKHLIQNGAKVILSSHLGRP 136 (474)
Q Consensus 102 g~I~Dd-~RI-~a~lpTIk~L~~~gaKvVL~SHlGRP 136 (474)
|.++|+ .+| .+...+|+.|.++|.+++++| |||
T Consensus 12 GTLl~~~~~i~~~~~~al~~l~~~G~~v~i~T--GR~ 46 (231)
T 1wr8_A 12 GTITYPNRMIHEKALEAIRRAESLGIPIMLVT--GNT 46 (231)
T ss_dssp TTTBCTTSCBCHHHHHHHHHHHHTTCCEEEEC--SSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCC
Confidence 455543 234 456778999999999999987 675
No 57
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=20.13 E-value=1.1e+02 Score=31.51 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=34.7
Q ss_pred CCCCCeEEEEeccCCCCCCCCccCcchhHhhhhHHHHHHHHCCCeEEE
Q 011942 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129 (474)
Q Consensus 82 dl~gK~VlvRvD~NVPl~~~g~I~Dd~RI~a~lpTIk~L~~~gaKvVL 129 (474)
+++||||.| +=.-.+++ +||.|=-.+++-|+.|.++|++|.+
T Consensus 326 ~~~~~~v~v---lGlafK~~---~dD~R~sp~~~i~~~L~~~g~~v~~ 367 (467)
T 2q3e_A 326 TVTDKKIAI---LGFAFKKD---TGDTRESSSIYISKYLMDEGAHLHI 367 (467)
T ss_dssp CCTTCEEEE---ECCSSSTT---CCCCTTCHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCEEEE---EeeccCCC---CcchhhChHHHHHHHHHHCCCEEEE
Confidence 489999988 44555543 6999999999999999999999865
No 58
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=20.06 E-value=1.9e+02 Score=26.28 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=41.6
Q ss_pred HhhhhHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhhHHHHHHHhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecc
Q 011942 110 IRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENV 189 (474)
Q Consensus 110 I~a~lpTIk~L~~~gaKvVL~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~f~~d~ig~~v~~~i~~l~~GeVlLLENl 189 (474)
++.....|+...+=|++.|.+ |.|.+.+....-.++.+++.|.++.. -..|=.+.|||.
T Consensus 88 ~~~~~~~i~~A~~lG~~~v~~-~~g~~~~~~~~~~~~~~~~~l~~l~~--------------------~~~gv~l~lEn~ 146 (287)
T 2x7v_A 88 VELLKKEVEICRKLGIRYLNI-HPGSHLGTGEEEGIDRIVRGLNEVLN--------------------NTEGVVILLENV 146 (287)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE-CCEECTTSCHHHHHHHHHHHHHHHHT--------------------TCCSCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCCCCCCHHHHHHHHHHHHHHHHc--------------------ccCCCEEEEeCC
Confidence 444455666666679997654 76755322112234445555555431 125778999999
Q ss_pred cCccccccCcHH-HHHHHhh
Q 011942 190 RFYKEEEKNDPE-FAKKLAS 208 (474)
Q Consensus 190 RF~~eE~~nd~~-fak~LA~ 208 (474)
..+...-.++++ +.+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~ 166 (287)
T 2x7v_A 147 SQKGGNIGYKLEQLKKIRDL 166 (287)
T ss_dssp CCCTTEECSSHHHHHHHHHH
T ss_pred CCCCCccCCCHHHHHHHHHh
Confidence 654322233443 3444433
Done!