RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011942
(474 letters)
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 719 bits (1858), Expect = 0.0
Identities = 204/402 (50%), Positives = 268/402 (66%), Gaps = 5/402 (1%)
Query: 69 SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
S A + + DL KKVF+R D NVP DD NITDD RIR+A+PTI++ + NG VI
Sbjct: 1 SNAMSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60
Query: 129 LSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
L+SHLGRPK ++ K+SL P+ RL+ LL ++V A D IG + + +L G +LLLEN
Sbjct: 61 LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLEN 120
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYL--KPSVAGFLLQK 246
+RF K E KND AK+LAS+ +Y+NDAFG HRAH+S E +TK+ K AGFLLQK
Sbjct: 121 LRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180
Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
E+D+ + P RPF A+VGGSKVS K+ + +LL D L++GGGM FTF KA G +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDI 240
Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGL 366
G+SL+EE+ L+ A +L K K GV + LP DVV A + D K VPA IP+GWMGL
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGL 300
Query: 367 DIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGG 426
DIGP SV+ F E + +T+ WNGPMGVFE DKF+ G+ ++ +++ T+++GGG
Sbjct: 301 DIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISE---GHATSVVGGG 357
Query: 427 DSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
D+ V + G A M+ ISTGGGASLEL+EGKELPGV AL
Sbjct: 358 DTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRS 399
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 712 bits (1841), Expect = 0.0
Identities = 237/400 (59%), Positives = 299/400 (74%), Gaps = 8/400 (2%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M KK++ ++ D++GK+VF R D NVP++ ITDDTRIRAA+PTI++LI++GAKVIL
Sbjct: 1 MNKKTIRDV---DVRGKRVFCRVDFNVPMEQG-AITDDTRIRAALPTIRYLIEHGAKVIL 56
Query: 130 SSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
+SHLGRPKG V + L + RL ELL V K ++ +G EV+ V L EG VLLLEN
Sbjct: 57 ASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLEN 116
Query: 189 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKEL 248
VRFY EEKNDPE AK A LADLYVNDAFG AHRAHASTEG+ YL P+VAGFL++KEL
Sbjct: 117 VRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEL 175
Query: 249 DYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGS 308
+ L A+S+P RPF AI+GG+KV KIGVI++LLE D L++GGG+ +TF KA G VG
Sbjct: 176 EVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGK 235
Query: 309 SLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDI 368
SL+EEDK++LA + + KAK KGV +P DVV+AD+FA DAN+KVVP AIP W LDI
Sbjct: 236 SLLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDI 295
Query: 369 GPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS 428
GP + + + + + +K V+WNGPMGVFE D FA GT+AIA+ LA+ ++IGGGDS
Sbjct: 296 GPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEAL--DTYSVIGGGDS 353
Query: 429 VAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
AAVEK G+A M HISTGGGASLE +EGK+LPGVVAL++
Sbjct: 354 AAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 710 bits (1836), Expect = 0.0
Identities = 227/399 (56%), Positives = 290/399 (72%), Gaps = 7/399 (1%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
K ++ ++ DLKGK+V +R D NVP+ D + DDTRIRAA+PTIK+ ++ GAKVIL S
Sbjct: 2 KMTIRDV---DLKGKRVIMRVDFNVPVKDG-VVQDDTRIRAALPTIKYALEQGAKVILLS 57
Query: 132 HLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 190
HLGRPKG +P+FSLAP+ RLSELLG +V +G EV+K V L EG VLLLEN R
Sbjct: 58 HLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTR 117
Query: 191 FYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDY 250
F+ E KNDPE AK ASLAD++VNDAFGTAHRAHAS G+ +++ PSVAGFL++KE+ +
Sbjct: 118 FHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKF 176
Query: 251 LVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSL 310
L +P++P+ ++GG+KVS KIGVI +L+E D +L+GG M+FTF KA G VGSS
Sbjct: 177 LSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSR 236
Query: 311 VEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPAT-AIPDGWMGLDIG 369
VEEDK+DLA L+ KAK KGV ++LP D VIA K P KVV IP+GWMGLDIG
Sbjct: 237 VEEDKIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIG 296
Query: 370 PDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSV 429
P++++ F + L KTV+WNGPMGVFE D FA GT+ +A +A L+ KG T++GGGDS
Sbjct: 297 PETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSA 356
Query: 430 AAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
AAV K G+ SH+STGGGASLE LEGKELPG+ ++
Sbjct: 357 AAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRI 395
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 706 bits (1824), Expect = 0.0
Identities = 199/395 (50%), Positives = 259/395 (65%), Gaps = 7/395 (1%)
Query: 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132
+++ +L D KGK+V VR D NVP+ D + D+TRI ++PT++HL+ GA ++L SH
Sbjct: 2 RTLLDL---DPKGKRVLVRVDYNVPVQDG-KVQDETRILESLPTLRHLLAGGASLVLLSH 57
Query: 133 LGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFY 192
LGRPKG PK+SLAP+ L L E + +L G VLLLENVRF
Sbjct: 58 LGRPKGPDPKYSLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFE 117
Query: 193 KEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLV 252
EEKNDPE + + A L + +V DAFG+AHRAHAS GV + L P+ AGFL++KE+ L
Sbjct: 118 PGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEVRALS 176
Query: 253 GAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSSLVE 312
+ P+RP+A ++GG+KVS KIGVIESLL D LL+GG M FTF KA G VG SLVE
Sbjct: 177 RLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVE 236
Query: 313 EDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDIGPDS 372
ED+LDLA LL +A+A GV + LP DVV A++ ++V PA AIP +MGLDIGP +
Sbjct: 237 EDRLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKT 296
Query: 373 VKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAV 432
+ F AL+ +TV WNGPMGVFE F GT A+ + +A L G T++GGGDSVAAV
Sbjct: 297 REAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALE--GAFTVVGGGDSVAAV 354
Query: 433 EKVGVAGVMSHISTGGGASLELLEGKELPGVVALD 467
++G+ H+STGGGASLE LE LPG+ L+
Sbjct: 355 NRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 688 bits (1779), Expect = 0.0
Identities = 194/419 (46%), Positives = 261/419 (62%), Gaps = 28/419 (6%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSS 131
KKS+ E DLKGKKV +R D NVP+ + IT+D RIR+A+PT+K ++ G +L S
Sbjct: 2 KKSINEC---DLKGKKVLIRVDFNVPVKN-GKITNDYRIRSALPTLKKVLTEGGSCVLMS 57
Query: 132 HLGRPKG-----------------VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174
HLGRPKG K +L P+ RLSELL V A DC+ +
Sbjct: 58 HLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLN--AADV 115
Query: 175 VASLPEGGVLLLENVRFYKEE----EKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEG 230
V+ + G V+LLENVRFYKEE K+ AK LAS D+Y++DAFGTAHR A+ G
Sbjct: 116 VSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTG 175
Query: 231 VTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLL 290
+ K L AG+L++KE+ Y + +P RP AIVGG+KVS KI +++++L+ D LL+
Sbjct: 176 IPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLI 235
Query: 291 GGGMIFTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDAN 350
GG M +TF KAQG S+G S EE KL+ A +LL KA+ + V ++LP D V +F +
Sbjct: 236 GGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDS 295
Query: 351 SKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKK 410
+ IP+G M LDIGP +++ + + + K+ IWNGPMGVFE ++ GT AIAK
Sbjct: 296 PLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKA 355
Query: 411 LADLSGK-GVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
+ + + G+ +IIGGGDS +A E G A MSH+STGGGASLELLEGK LPGV LD+
Sbjct: 356 MGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDD 414
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 687 bits (1775), Expect = 0.0
Identities = 192/417 (46%), Positives = 266/417 (63%), Gaps = 24/417 (5%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGA-KVI 128
K S+ +L D+K KKV VR D NVP+++ I D RI A +PTI HL + GA K+I
Sbjct: 5 GNKLSISDLK--DIKNKKVLVRVDFNVPIENG-IIKDTNRITATLPTINHLKKEGASKII 61
Query: 129 LSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187
L SH GRP G K++L P+ L LLG +V+ +DC+G EVE + + E V+LLE
Sbjct: 62 LISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLE 121
Query: 188 NVRFYKEEE---------------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVT 232
N+RF+ EEE ++ +F L LAD+++NDAFGTAHRAH+S GV
Sbjct: 122 NLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGVK 181
Query: 233 KYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGG 292
+K +GFL++KEL+Y A+ +P+RP AI+GG+KVS KI +I++LL+ D +++GG
Sbjct: 182 LNVK--ASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGG 239
Query: 293 GMIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANS 351
GM +TF K + +G+SL +E + ++ KAKAK V + LP D IAD F +AN+
Sbjct: 240 GMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANT 299
Query: 352 KVVP-ATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKK 410
K V IPD WMGLD GP S++ + + + T+KTVIWNGP GVFE FA G+
Sbjct: 300 KFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNL 359
Query: 411 LADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALD 467
+ +++ KG TI+GGGD+ + VE+ +SH+STGGGASLELLEGKELPGV+AL
Sbjct: 360 VVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKELPGVLALS 416
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 684 bits (1768), Expect = 0.0
Identities = 183/402 (45%), Positives = 260/402 (64%), Gaps = 15/402 (3%)
Query: 69 SMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVI 128
+M+ ++ ++ DLK KKV VR D NVP+ D +T RI AA+PTI++++ G VI
Sbjct: 3 AMSFLTLKDV---DLKDKKVLVRVDFNVPVKDG-KVTSKVRIEAAIPTIQYILDQGGAVI 58
Query: 129 LSSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 186
L SHLGRP +FSL P+ LSE++ V A D + + G +++
Sbjct: 59 LMSHLGRPTEGEYDSQFSLEPVAKALSEIINKPVKFAKDWLDG------VDVKAGEIVMC 112
Query: 187 ENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQK 246
ENVRF E+K+ + +KK+ASL D++V DAF TAHRA AST GV KY+ + AG LL
Sbjct: 113 ENVRFNSGEKKSTDDLSKKIASLGDVFVMDAFATAHRAQASTYGVAKYIPVACAGILLTN 172
Query: 247 ELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISV 306
E+ L A+ SPK+P AAIVGGSKVS+K+ V+ +LL+ +IL++GGG+ TF KA+G V
Sbjct: 173 EIQALEKALKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDV 232
Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGL 366
G+SL E+D + AT +LAKAKA GVN+ +P DV +A +F+ +A + + + + M L
Sbjct: 233 GNSLYEQDLVAEATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMIL 292
Query: 367 DIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGG 426
DIGP+S K E L + T++WNGP+GVFEFD FA GT+A++ +A ++ GGG
Sbjct: 293 DIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLAIAQ---SHAFSVAGGG 349
Query: 427 DSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
D++AA+EK G+ +S+IST GGA LE LEGK+LP + L E
Sbjct: 350 DTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKE 391
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 683 bits (1764), Expect = 0.0
Identities = 204/417 (48%), Positives = 275/417 (65%), Gaps = 24/417 (5%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VI 128
+K SV +L DLK K+VF+R D NVPLD IT + RI AA+PTIK+++++ + V+
Sbjct: 3 SSKLSVQDL---DLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEHHPRYVV 58
Query: 129 LSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187
L+SHLG+P G K+SLAP+ L LLG V +DC+GPEVE V + G V+LLE
Sbjct: 59 LASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLE 118
Query: 188 NVRFYKEEE--------------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
N+R++ EEE ++ +F +L+SLAD+Y+NDAFGTAHRAH+S G
Sbjct: 119 NLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD- 177
Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
L AGFLL+KEL Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGG
Sbjct: 178 -LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGG 236
Query: 294 MIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSK 352
M FTF K + +G S+ ++ ++ L+ KAKAKGV ++LP D +IAD F+ DAN+K
Sbjct: 237 MAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTK 296
Query: 353 VVP-ATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKL 411
V IP GW GLD GP+S K F + KT++WNGP GVFEF+KFA GT+A+ ++
Sbjct: 297 TVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEV 356
Query: 412 ADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
S G T IIGGGD+ +K GV +SH+STGGGASLELLEGKELPGV L E
Sbjct: 357 VKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 413
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 670 bits (1731), Expect = 0.0
Identities = 180/401 (44%), Positives = 246/401 (61%), Gaps = 20/401 (4%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVIL 129
M+ + +L DL GK+VF+RADLNVP+ D +T D RIRA++PTI+ ++ GAKV++
Sbjct: 1 MSVIKMTDL---DLAGKRVFIRADLNVPVKDG-KVTSDARIRASLPTIELALKQGAKVMV 56
Query: 130 SSHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLE 187
+SHLGRP +FSL P+V L + L V D + + EG +++LE
Sbjct: 57 TSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLE 110
Query: 188 NVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKE 247
NVRF K E+K+D +KK A+L D++V DAFGTAHRA AST G+ K+ + AG LL E
Sbjct: 111 NVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAE 170
Query: 248 LDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVG 307
LD L A+ P RP AIVGGSKVS+K+ V++SL + D L++GGG+ TF AQG VG
Sbjct: 171 LDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVG 230
Query: 308 SSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLD 367
SL E D +D A LL + +PSDV +A +F+ A + + + LD
Sbjct: 231 KSLYEADLVDEAKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQILD 285
Query: 368 IGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGD 427
IG S + E L KT++WNGP+GVFEF F GTE +A +AD +I GGGD
Sbjct: 286 IGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGD 342
Query: 428 SVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDE 468
++AA++ G+A +S+ISTGGGA LE +EGK LP V L+E
Sbjct: 343 TLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 668 bits (1727), Expect = 0.0
Identities = 195/416 (46%), Positives = 267/416 (64%), Gaps = 26/416 (6%)
Query: 72 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILS 130
K ++ +L D+KGK+V +R D NVP+ +N IT++ RI+AAVP+IK + NGAK V+L
Sbjct: 5 KLTLDKL---DVKGKRVVMRVDFNVPMKNN-QITNNQRIKAAVPSIKFCLDNGAKSVVLM 60
Query: 131 SHLGRPKG--VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLEN 188
SHLGRP G + K+SL P+ L LLG V+ DC+GPEVEK A+ G V+LLEN
Sbjct: 61 SHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLEN 120
Query: 189 VRFYKEEEKND---------------PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
+RF+ EEE F L+ L D+YVNDAFGTAHRAH+S GV
Sbjct: 121 LRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN- 179
Query: 234 YLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGG 293
L GFL++KEL+Y A+ SP+RPF AI+GG+KV+ KI +I ++L+ + +++GGG
Sbjct: 180 -LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGG 238
Query: 294 MIFTFYKA-QGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSK 352
M FTF K + +G+SL +E+ + L++KA+ GV + LP D V ADKF +A +
Sbjct: 239 MAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTG 298
Query: 353 -VVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKL 411
A+ IP GWMGLD GP+S K + EA+ K ++WNGP+GVFE++ FA GT+A+ ++
Sbjct: 299 QATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEV 358
Query: 412 ADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALD 467
+ +G TIIGGGD+ K +SH+STGGGASLELLEGK LPGV AL
Sbjct: 359 VKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALS 414
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 659 bits (1702), Expect = 0.0
Identities = 137/401 (34%), Positives = 210/401 (52%), Gaps = 20/401 (4%)
Query: 82 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTP 141
+ K VF+R DLN P+ D I D R +A +PTI++LI++GAKV++ +H G+P
Sbjct: 8 NFHNKTVFLRVDLNSPMKDG-KIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYS-ED 65
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDP- 200
+ LSELL V +D G + + L G V +LEN+RF EE KN P
Sbjct: 66 YTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPI 125
Query: 201 ------EFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGA 254
KKL+ + D VNDAF TAHR+ S G + P + GFL++KE++ L+ A
Sbjct: 126 EECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIK-PMIMGFLMEKEIEALMRA 184
Query: 255 VSSPKRPFAAIVGGSKVSSKIGVIESLL--ETCDILLLGGGMIFTFYKAQGISVGSSLVE 312
S P ++GG+KV + V+E++L E D++L GG + F A+G +G VE
Sbjct: 185 YYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVE 244
Query: 313 EDKLDLATTLLAKAKAK----GVNLLLPSDVVIADKFAPDANSKVVPATAIPDGWMGLDI 368
K + A+ + P D + K + + + +DI
Sbjct: 245 FMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDI 304
Query: 369 GPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDS 428
G + + + E L + ++ NGPMGVFE ++FA+GT + K +AD +++GGG S
Sbjct: 305 GKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADSPA---FSVLGGGHS 361
Query: 429 VAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA 469
+A+++K G+ G ++HISTGGGA L G+ELP + AL +
Sbjct: 362 IASIQKYGITG-ITHISTGGGAMLSFFAGEELPVLRALQIS 401
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 570 bits (1471), Expect = 0.0
Identities = 169/347 (48%), Positives = 226/347 (65%), Gaps = 18/347 (5%)
Query: 142 KFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEE----- 196
K+SLAP+ L LLG V +DC+GPEVE V + G V+LLEN+R++ EEE
Sbjct: 3 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKV 62
Query: 197 ---------KNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKE 247
++ +F +L+SLAD+Y+NDAFGTAHRAH+S G L AGFLL+KE
Sbjct: 63 DGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFD--LPQRAAGFLLEKE 120
Query: 248 LDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDILLLGGGMIFTFYKA-QGISV 306
L Y A+ +P RPF AI+GG+KV+ KI +I++LL+ D +++GGGM FTF K + +
Sbjct: 121 LKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEI 180
Query: 307 GSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDVVIADKFAPDANSKVVP-ATAIPDGWMG 365
G S+ ++ ++ L+ KAKAKGV ++LP D +IAD F+ DAN+K V IP GW G
Sbjct: 181 GDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQG 240
Query: 366 LDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGG 425
LD GP+S K F + KT++WNGP GVFEF+KFA GT+A+ ++ S G T IIGG
Sbjct: 241 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGG 300
Query: 426 GDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPV 472
GD+ +K GV +SH+STGGGASLELLEGKELPGV L E +
Sbjct: 301 GDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKKSL 347
Score = 105 bits (264), Expect = 7e-25
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 64 TRAVVSMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQN 123
+ +K SV +L DLK K+VF+R D NVPLD IT + RI AA+PTIK+++++
Sbjct: 342 SEKKSLSSKLSVQDL---DLKDKRVFIRVDFNVPLDGK-KITSNQRIVAALPTIKYVLEH 397
Query: 124 GAK-VILSSHLGRPKG 138
+ V+L+SHLGRP G
Sbjct: 398 HPRYVVLASHLGRPNG 413
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 1e-08
Identities = 105/592 (17%), Positives = 169/592 (28%), Gaps = 209/592 (35%)
Query: 2 ASATAPTTLS--------LVKTAASSSLSSPRASFLRMPTSASRRLGFSAADP------L 47
A +T P TLS LV TA+ S + F ++ + GF+A D L
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE--GFAADDEPTTPAEL 60
Query: 48 LT---CHVASRLSSIKTKGTRAVVSMAKKSVGELSGADLKGKKV--FVRADLNVPLDDNQ 102
+ +V+S + K V+ + E L+G + L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVL---NLCLTEFENCYLEGNDIHALA-----AKLLQEN 112
Query: 103 NITDDTR---IRA---AVPTIKHLIQNGAKVILSSHLGRPK----------GV------- 139
+ T I+ A K + L +G G
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 140 ------TPKFSLAPLVPRLSELL----------------GIQVVK----ADDCIGPEVEK 173
T + L+ +E L G+ +++ + P+ +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--PDKDY 230
Query: 174 LVA---SLPEGGVLLLEN-VRFYKEEEKNDPEFAKKLASL-------------------A 210
L++ S P GV+ L + V K E L
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 211 DLYVND------AF--GT-AHRAHAST--------------EGVTKYLKPS----VAGFL 243
+V+ F G + A+ +T EGV PS ++ L
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-----PSPMLSISN-L 344
Query: 244 LQKELDYLVGAVSS--P--KRPFAAIVGGSK---VSSKIGVIESLLETCDILLLGGGMIF 296
Q+++ V +S P K+ ++V G+K VS G +SL G+
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLY----------GLNL 391
Query: 297 TFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLP----------SDVVIADKFA 346
T KA+ LD + ++ K K N LP D
Sbjct: 392 TLRKAKA---------PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS--DLIN 440
Query: 347 PDANSKVVPATA----IP--DGWMGLDI---GPDSVKTFNEALDTTKTVIWN-------- 389
D V A IP D + G D+ + + + V W
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI-IRLPVKWETTTQFKAT 499
Query: 390 -----GPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVG 436
GP G G + + D G GV I+ G + + G
Sbjct: 500 HILDFGPGGAS-------GLGVLTHRNKD--GTGVRVIVAGTLDINPDDDYG 542
Score = 46.2 bits (109), Expect = 2e-05
Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 51/198 (25%)
Query: 302 QGI-SVGSSLVEEDKLDLATTLLAKAKAK-----GVNLLLPSDVV------IADKFAPDA 349
QG G + A + +A G ++L D+V + F
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSIL---DIVINNPVNLTIHFGG-E 1679
Query: 350 NSKVVPATAIPDGWMGL------DIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKF--- 400
K I + + + D + K F E + + + + G+ +F
Sbjct: 1680 KGK-----RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 401 AVGTEAIAKKLADLSGKGVTTIIGGGDSVA--------AVEKVGVAGVMSHISTGGGASL 452
A+ A DL KG +I + A A+ +A VMS I + +
Sbjct: 1735 ALTLMEKA-AFEDLKSKG---LIPADATFAGHSLGEYAAL--ASLADVMS-IESL----V 1783
Query: 453 ELLE--GKELPGVVALDE 468
E++ G + V DE
Sbjct: 1784 EVVFYRGMTMQVAVPRDE 1801
Score = 42.0 bits (98), Expect = 5e-04
Identities = 47/300 (15%), Positives = 80/300 (26%), Gaps = 91/300 (30%)
Query: 80 GADL-----KGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLG 134
G DL + V+ RAD H IL +
Sbjct: 1632 GMDLYKTSKAAQDVWNRAD------------------------NHFKDTYGFSILDIVIN 1667
Query: 135 RPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKE 194
P +T F R+ E + + + EK+ + E + F E
Sbjct: 1668 NPVNLTIHFG-GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE----HSTSYTFRSE 1722
Query: 195 EEK-NDPEF---AKKLASLADLYV---------NDAF-GTAH-----RAHASTEGVTKYL 235
+ + +F A L A + F G H A AS V +
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG--HSLGEYAALASLADV---M 1777
Query: 236 KPSVA-------GFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLETCDIL 288
G +Q + S+ + +V++ E+L + +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQ-EALQYVVERV 1833
Query: 289 LLGGGMIFTFYKAQGISV--------GSSLV---EEDKLDLATTLLAKAKAKGVNLL-LP 336
K G V V + LD T +L K + ++++ L
Sbjct: 1834 G----------KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 36.6 bits (84), Expect = 0.022
Identities = 77/428 (17%), Positives = 121/428 (28%), Gaps = 148/428 (34%)
Query: 129 LSSHLGRPKGVTPKFSLAP-------LVPRLSELLGIQVVKADDCIG--PEVEKLVA--- 176
+ ++ RP +L+ LVP S + Q+ + PE + A
Sbjct: 1 MDAYSTRP------LTLSHGSLEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADD 52
Query: 177 ---SLPEGGVLLLENVRF-----YKEEEKNDPEFAKKL-ASLAD-----LYVND--AFGT 220
+ E L+ +F E +F + L L + L ND A
Sbjct: 53 EPTTPAE---LVG---KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-A 105
Query: 221 AHRAHASTEGVTK-------YLKPSVAGFLLQKELDY-----LVGAVSSPKRPFAAIVGG 268
A + + K Y+ A + ++ D L AV AI GG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 269 -------------------SKVSSKIGVIESLLETCDILLLGGGMIFTFYKAQGISVGSS 309
V I L L+ + QG+++
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE----LIRTTLDAEKVFTQGLNILEW 218
Query: 310 LVEE----DKLDLAT----------TLLAK----AKAKGVNLLLPSDVVIADKFAPDANS 351
L DK L + LA AK G P ++ K A +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQ 275
Query: 352 KVVPATAI--PDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEA-IA 408
+V A AI D W ++F ++ TV+ F +G A
Sbjct: 276 GLVTAVAIAETDSW----------ESFFVSVRKAITVL------------FFIGVRCYEA 313
Query: 409 KKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEG------KELPG 462
L + DS+ E GV M IS + E ++ LP
Sbjct: 314 YPNTSLPPSILE------DSLENNE--GVPSPMLSIS---NLTQEQVQDYVNKTNSHLPA 362
Query: 463 ----VVAL 466
++L
Sbjct: 363 GKQVEISL 370
Score = 35.8 bits (82), Expect = 0.034
Identities = 67/336 (19%), Positives = 101/336 (30%), Gaps = 117/336 (34%)
Query: 22 SSP--RASFLRMPTSASRRLGFSAAD-----PL-LTCHVASRLSSIKTKGTRA-VVSMAK 72
+S + + R GFS D P+ LT H K K R +M
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH----FGGEKGKRIRENYSAMIF 1693
Query: 73 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSH 132
+++ + LK +K+F + K +LS+
Sbjct: 1694 ETIVD---GKLKTEKIFKEIN---------------------EHSTSYTFRSEKGLLSA- 1728
Query: 133 LGRPKGVT----PKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVA--SLPEGGVLLL 186
T P A L L E + +K+ I P + A SL G
Sbjct: 1729 -------TQFTQP----A-LT--LMEKAAFEDLKSKGLI-PA-DATFAGHSL--G----- 1765
Query: 187 ENVRFYKEEEKNDPEF-AKKLASLAD-LYVNDAFGTAH-RAHASTE-------GVTKY-- 234
E+ A LASLAD + + R G + Y
Sbjct: 1766 --------------EYAA--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 235 --LKPS-VAGFLLQKELDYLVGAVSSPKRPFAAIV-----GGSKVSSKIGVIESLLETCD 286
+ P VA Q+ L Y+V V IV V++ G + +L +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GDLRALDTVTN 1867
Query: 287 ILLLGGGMIFTFYKAQGISV----GSSLVEEDKLDL 318
+L F K Q I + S +EE + L
Sbjct: 1868 VL--------NFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 1e-06
Identities = 59/393 (15%), Positives = 103/393 (26%), Gaps = 132/393 (33%)
Query: 21 LSSPRASFLRMPTSASRRLGFSAADPLLTC-------HVASR----------LSSIKTKG 63
L SP + R P S R+ D L +V SR L ++
Sbjct: 94 LMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAK 151
Query: 64 TRAVVSMAK--KSVGELSGADLKGKKVFVRADLNVP-LDDNQNITDDTRIRAAVPTIKHL 120
+ + K+ ++ KV + D + L+ + +T + +
Sbjct: 152 NVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------M 201
Query: 121 IQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLP 179
+Q I + R K + + L LL + + L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------------KSKPYENCL- 247
Query: 180 EGGVLLLENVRFYKEEEKNDPE----FA---KKLASLADLYVNDAFGTAHRAHASTEGVT 232
L+L NV+ + + F K L + V D A H S + +
Sbjct: 248 ----LVLLNVQ--------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 233 KYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESL-LETCDILLLG 291
L P K L + + L E
Sbjct: 296 MTLTPDEV-----KSL-------------LLKYLDCR--------PQDLPREVLTTNPRR 329
Query: 292 GGMI----------FTFYKAQGISVGSSLVEEDKLDLATTLLAKAKAKGVNLLLPSDV-- 339
+I + +K V DKL +N+L P++
Sbjct: 330 LSIIAESIRDGLATWDNWK---------HVNCDKLT-------TIIESSLNVLEPAEYRK 373
Query: 340 -----VIADKFAPDANSKVVPATAIPDGWMGLD 367
+ F P A+ +P + W +
Sbjct: 374 MFDRLSV---FPPSAH---IPTILLSLIWFDVI 400
Score = 41.8 bits (97), Expect = 4e-04
Identities = 43/289 (14%), Positives = 83/289 (28%), Gaps = 100/289 (34%)
Query: 3 SATAPTTLSLVKTAASSSLSSPR-----ASFLRMPTSASRRLGFSAAD--PLLTCHVA-- 53
SA T +SL S +L+ +L R P +A
Sbjct: 282 SAATTTHISLDHH--SMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAES 336
Query: 54 -----SRLSSIKTKGTRAVVSMAKKSVGELSGADLKGK----KVFVRADLNVPL------ 98
+ + K + ++ + S+ L A+ + VF ++P
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSLI 395
Query: 99 ------DDNQNITDDTRIRAAV------PTIK-HLIQ--------NGA---KVILS---- 130
D + + + V TI I N + I+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 131 -------------------SHLG---RPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIG 168
SH+G + + +L +V L + ++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQ----- 505
Query: 169 PEVEKL----VASLPEGGVL-LLENVRFYKEE-EKNDPEFAKKLASLAD 211
K+ A G +L L+ ++FYK NDP++ + + ++ D
Sbjct: 506 ----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 33.7 bits (78), Expect = 0.10
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
+ + I+ R T+ + + G +++L+S GRP G+ P
Sbjct: 17 TNSKKEISSRNRE-----TLIRIQEQGIRLVLAS--GRPTYGIVP 54
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 33.3 bits (77), Expect = 0.15
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L + +T + T+K L G + ++ GR V
Sbjct: 33 LSPDHFLTPYAKE-----TLKLLTARGINFVFAT--GRHYIDVGQ 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.16
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 196 EKNDPEFAKKLASLADLYVNDAFGTAHRAHASTE 229
EK KKL + LY +D+ A A+ E
Sbjct: 18 EKQA---LKKLQASLKLYADDS-APALAIKATME 47
Score = 31.5 bits (70), Expect = 0.31
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 4/15 (26%)
Query: 345 FAPDANSKVVPATAI 359
+A D+ PA AI
Sbjct: 32 YADDS----APALAI 42
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 32.8 bits (74), Expect = 0.25
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 141 PKFSLA----PL--VPRLSELLGIQV-VKADDCIGPEV 171
P+ PL +PRLS+ LG ++ +K DD +
Sbjct: 24 PRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAM 61
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 32.5 bits (75), Expect = 0.26
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L++ + T ++ G KV+L + GRP GV P
Sbjct: 17 LNEKNELAQATID-----AVQAAKAQGIKVVLCT--GRPLTGVQP 54
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 32.5 bits (75), Expect = 0.28
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L + I+ + I G V+L++ GRP GV
Sbjct: 17 LLPDHTISPAVKN-----AIAAARARGVNVVLTT--GRPYAGVHN 54
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 32.2 bits (74), Expect = 0.28
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L N I T+ I+++ + G V L + R +
Sbjct: 18 LRSNGKIHQATKD-----AIEYVKKKGIYVTLVT--NRHFRSAQK 55
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 32.3 bits (74), Expect = 0.30
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
L+ ++ + ++ ++G +V++S+ GR V
Sbjct: 16 LNSKHQVSLENEN-----ALRQAQRDGIEVVVST--GRAHFDVMS 53
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 31.3 bits (72), Expect = 0.46
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
N+ I + I+ G ++L + G
Sbjct: 15 TYPNRMIHEKALE-----AIRRAESLGIPIMLVT--GNT 46
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 31.0 bits (71), Expect = 0.64
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK-GVTP 141
D+ I + + I+ +N V++ + GR +
Sbjct: 17 RDEVYGIPESAKH-----AIRLCQKNHCSVVICT--GRSMGTIQD 54
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
structural genomics, structural genomics consortium,
SGC, protein transport; 2.20A {Cryptosporidium parvum}
SCOP: d.159.1.7
Length = 215
Score = 31.0 bits (70), Expect = 0.70
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 21/135 (15%)
Query: 117 IKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVK--ADDCIGPEVEKL 174
+ L + +L G V + + L + +V D I +
Sbjct: 48 RELLATDKINYVL--CTG---NVCSQEYVEMLKNITKN---VYIVSGDLDSAIFNPDPES 99
Query: 175 VASLPEGGVLLLENVRFY-----KEEEKNDPEFAKKLASL--ADLYVNDAFGTAHRAHAS 227
PE V+ + + + +DP ++ D+ V G H+
Sbjct: 100 NGVFPEYVVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRRLDCDILV---TGHTHKLRVF 156
Query: 228 TEGVTKYLKP-SVAG 241
+ +L P + G
Sbjct: 157 EKNGKLFLNPGTATG 171
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 31.0 bits (71), Expect = 0.73
Identities = 27/154 (17%), Positives = 43/154 (27%), Gaps = 34/154 (22%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLG 157
D ++ I+ +I+ + G V L S G P+V L LG
Sbjct: 17 TDRDRLISTKAIE-----SIRSAEKKGLTVSLLS--GNVI---------PVVYALKIFLG 60
Query: 158 I----------QVVKADDCI-----GPEVEKLVASLPEGGVL---LLENVRFYKEEEKND 199
I + D I K + + + + L R D
Sbjct: 61 INGPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDID 120
Query: 200 PEFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 233
PE + A+ F + + H G K
Sbjct: 121 PEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDK 154
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 31.2 bits (70), Expect = 0.73
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
LD + P + L + VIL S +
Sbjct: 21 LDSHSYDWQPAA-----PWLTRLREANVPVILCS--SKT 52
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 31.0 bits (71), Expect = 0.87
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 17/63 (26%)
Query: 70 MAKKSVGELSGADLKGKKVFV-----RADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNG 124
A + + L + KK+ + + D T DTR +++ K+L+ G
Sbjct: 315 FASRIIDSLFN-TVTDKKIAILGFAFKKD-----------TGDTRESSSIYISKYLMDEG 362
Query: 125 AKV 127
A +
Sbjct: 363 AHL 365
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 31.0 bits (71), Expect = 0.91
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 70 MAKKSVGELSGADLKGKKVFV-----RADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNG 124
A K + EL + KK+ + + + T DTR +A+ IKHL++
Sbjct: 321 FADKIIAELFN-TVTDKKIAIFGFAFKKN-----------TGDTRESSAIHVIKHLMEEH 368
Query: 125 AKV 127
AK+
Sbjct: 369 AKL 371
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 30.3 bits (68), Expect = 1.0
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 104 ITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK 137
+ + + A ++ L G V+ + + +
Sbjct: 12 LDERGELGPAREALERLRALGVPVVPVT--AKTR 43
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 30.6 bits (70), Expect = 1.2
Identities = 23/98 (23%), Positives = 29/98 (29%), Gaps = 20/98 (20%)
Query: 342 ADKFAPDA--NSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDK 399
KF V DG NE +KTVI G F+ K
Sbjct: 77 MAKFDQTICLEQAVESVEKQADGVF--------KLVTNEETHYSKTVIITAGNGAFKPRK 128
Query: 400 FAVGTEA---------IAKKLADLSGKGVTTIIGGGDS 428
+ L +G+ V I+GGGDS
Sbjct: 129 LELENAEQYEGKNLHYFVDDLQKFAGRRVA-ILGGGDS 165
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 30.2 bits (69), Expect = 1.4
Identities = 24/98 (24%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 342 ADKFAPDA--NSKVVPATAIPDGWMGLDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDK 399
F P + D + V T T K VI +G FE +
Sbjct: 75 VAPFNPVYSLGERAETLEREGDLFK--------VTTSQGNAYTAKAVIIAAGVGAFEPRR 126
Query: 400 FAV-GTEAIA--------KKLADLSGKGVTTIIGGGDS 428
G K A+ GK V I+GGGDS
Sbjct: 127 IGAPGEREFEGRGVYYAVKSKAEFQGKRVL-IVGGGDS 163
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus,
phosphorylation, ribonucleoprotein, ribosome biogenesis,
RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Length = 111
Score = 28.6 bits (64), Expect = 1.8
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 60 KTKGTRAVVSM-----AKKSVGELSGADLKGKKVFVRADLNVP 97
+ + +++ L+ + +G + V D N P
Sbjct: 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces
olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A*
2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A
3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A*
1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Length = 386
Score = 29.8 bits (66), Expect = 2.0
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 398 DKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGVMSH 443
D+F G + + D G + ++V + ++G GV H
Sbjct: 8 DRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFH 53
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 29.4 bits (67), Expect = 2.0
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 98 LDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
LD+ + + T ++ L Q+G V +++ GR
Sbjct: 15 LDEQKQLPLSTIE-----AVRRLKQSGVYVAIAT--GRAPFMFEH 52
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 29.4 bits (67), Expect = 2.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 16/59 (27%)
Query: 100 DNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGI 158
+ I T ++ G K+ +++ GRPK ++ LSEL
Sbjct: 17 ETHRIPSSTIE-----ALEAAHAKGLKIFIAT--GRPK---------AIINNLSELQDR 59
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET:
DNA; 2.00A {Bacillus subtilis}
Length = 135
Score = 28.3 bits (63), Expect = 2.4
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 174
++ IQ G I K+SL PL +L E + + + + +KL
Sbjct: 71 RLRMFIQKGFLFIEECEDQNGI-KFEKYSLQPLWGKLYEYIQLAQNQTQERKAEGEQKL 128
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication,
primosome; 2.3A {Geobacillus kaustophilus HTA426}
Length = 128
Score = 28.3 bits (63), Expect = 2.9
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 116 TIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 165
++ L+Q G + + H K++L PL +L L Q + +
Sbjct: 71 MVRRLLQKGM-IAIEEHTDEQGIRNEKYTLEPLWEKLVHHLYTQAAQQGE 119
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 29.0 bits (64), Expect = 3.2
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 106 DDTRIRAAVPTIKHLIQNGAKVILSSHLGRP 136
A P I+ L G ++I +S +
Sbjct: 15 PGYEPDPAKPIIEELKDMGFEIIFNS--SKT 43
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 28.7 bits (65), Expect = 3.6
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 99 DDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGVTP 141
D + + + IK I+ G V + + GR G+
Sbjct: 41 DKDIKVPSENID-----AIKEAIEKGYMVSICT--GRSKVGILS 77
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 1.90A {Acinetobacter baumannii}
PDB: 3pol_A
Length = 253
Score = 28.2 bits (64), Expect = 5.7
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD RI G V+L+S
Sbjct: 49 TDDERIAEIC------RAEGVDVVLTS 69
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2dh9_A
Length = 92
Score = 26.4 bits (59), Expect = 6.3
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 71 AKKSVGELSGADLKGKKVFVRAD 93
A+++ ++G L G+++ VR D
Sbjct: 61 AERACRMMNGMKLSGREIDVRID 83
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 27.8 bits (63), Expect = 6.5
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD R+ AV G V ++S
Sbjct: 49 TDDERVEQAV------QAFGGVVCMTS 69
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope;
1.80A {Coxiella burnetii}
Length = 256
Score = 27.9 bits (63), Expect = 6.6
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TDD RIR GA V ++S
Sbjct: 56 TDDKRIRQVA------EDFGAVVCMTS 76
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13
PDB: 1vh3_A 3duv_A*
Length = 262
Score = 27.9 bits (63), Expect = 7.0
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TD+ + GA+V ++S
Sbjct: 49 TDNENVADVA------KSFGAEVCMTS 69
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 27.8 bits (63), Expect = 7.4
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 36/88 (40%)
Query: 366 LDIGPDSVKTFNEALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKL-----ADLSGKGVT 420
++ G ++T + A+ +++I V T A + + KGVT
Sbjct: 87 VEGGLHQIETASGAVLKARSII--------------VATGAKWRNMNVPGEDQYRTKGVT 132
Query: 421 T---------------IIGGGDSVAAVE 433
+IGGG+S VE
Sbjct: 133 YCPHCDGPLFKGKRVAVIGGGNS--GVE 158
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 27.9 bits (63), Expect = 8.2
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 402 VGTEAI--AKKLADLSGKGVTTIIGGGDSVAAVEKVGVAGV 440
V E I A L V + G + A V + V GV
Sbjct: 17 VSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGV 57
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family;
structural genomics, oxidoreductase, PSI-2; HET: UGA;
1.70A {Porphyromonas gingivalis}
Length = 450
Score = 27.8 bits (63), Expect = 8.6
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 70 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKV 127
+ K G +++G+ V + + TDD R ++ I+ L++ G +V
Sbjct: 304 LFDKFSTYYKG-NVQGRCVAI---WGLSFKPG---TDDMREAPSLVLIEKLLEVGCRV 354
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 27.5 bits (62), Expect = 8.8
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 6/27 (22%)
Query: 105 TDDTRIRAAVPTIKHLIQNGAKVILSS 131
TD + AV G +V ++
Sbjct: 65 TDHEDVARAV------EAAGGEVCMTR 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.367
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,009,197
Number of extensions: 451020
Number of successful extensions: 1209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 70
Length of query: 474
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 377
Effective length of database: 3,993,456
Effective search space: 1505532912
Effective search space used: 1505532912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.3 bits)