BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011943
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D952|EVPL_MOUSE Envoplakin OS=Mus musculus GN=Evpl PE=2 SV=3
Length = 2035
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 48/254 (18%)
Query: 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRM 148
I+EE VK ++K+ LE + + L+ E D K +V L Q LQ Q DL +
Sbjct: 1462 IMEEVVK---------LEKDPDLERSTEALRRELDQEKNRV-TELHRECQGLQVQVDL-L 1510
Query: 149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW--LQKEAALEQKISQLRDE 206
QK + E+TI + + ++++ LE A + W L +E A + R+E
Sbjct: 1511 QKTKSQEKTI----YKEVIRVEKDPVLEGERARV------WEILNRERAARKG----REE 1556
Query: 207 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 266
SL+ER+ EA + SW++ E+ + S D +L+ Q+ ELE+ +
Sbjct: 1557 DVR------SLQERIDRAEALRRSWSREEAELQRARDQASQDCGRLQRQLRELEQQKQ-- 1608
Query: 267 LQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEK-- 324
Q+ RQL+E L SQ + E +K A Q TQ+EAA ++ E ++ EK
Sbjct: 1609 -QKARQLQEE-GRLLSQKTESERQKAAQRSQA--VTQLEAA------ILQEKDKIYEKER 1658
Query: 325 -VNDLSVKLDRQSV 337
+ DL K+ R+ +
Sbjct: 1659 TLRDLHTKVSREEL 1672
>sp|Q09778|TSC1_SCHPO Tuberous sclerosis 1 protein homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tsc1 PE=1 SV=1
Length = 899
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 35/235 (14%)
Query: 47 ASEPADI---QNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILE--ETVKHLRNER 101
ASEP I QN + H + + A L+ E + + E ++ ++ ER
Sbjct: 469 ASEPFSISWPQNPSISGSVHSATTFDKAQLSNTEDSYDNISHGTSYSEGVSSIHMVKGER 528
Query: 102 ESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQL 161
S N +L E + +T +TI++LQR + L +Q E E+ ++Q
Sbjct: 529 GS----------------NNLELTSESLSST-NDTIRRLQR-DLLFLQNELRFEKFVRQQ 570
Query: 162 RNQNDLHIQREGGLEMNIAN-----LQSEKEFWLQKEAALEQKISQLRDES-AALNMKRA 215
QN + RE L+M + + L + K + Q E L +I + R ES AALN +R
Sbjct: 571 HLQNIGKLHREHILDMAVESERQKLLLTNKRYKAQIEL-LNSEIDKHRSESQAALN-RRV 628
Query: 216 SLEE----RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 266
E ++K L +K +W ES K +I L + +R +++ S+N L
Sbjct: 629 KWENDFNNKIKALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQL 683
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 83/212 (39%), Gaps = 44/212 (20%)
Query: 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL-----------------KENVSSL 280
S+ + L +I L +V+EL +N L++EN +L K+ + L
Sbjct: 1143 SRSNLFQLKNEICSLTTEVMELNNKKNELIEENNKLNLVDQGKKKLKKDVEKQKKEIEKL 1202
Query: 281 RSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG 340
QL+ + QI+ ++KL ENIEL+ NDL+ K D +
Sbjct: 1203 NKQLTK-------------CNKQIDELNEEVEKLNNENIELITYSNDLNNKFDMKENNLM 1249
Query: 341 LSSAIGSDAVTALTSDTEPM--------SESSDNMSSLNNRLETQGVVAVKEDRNGINGV 392
+ D + + S + M E N++ +NN + + +K N +N
Sbjct: 1250 MKLDENEDNIKKMKSKIDDMEKEIKYREDEKKRNLNEINNLKKKNEDMCIK--YNEMNIK 1307
Query: 393 HAD----PPPLVLSSSEAEYSGEIVQIPLDDK 420
+ D + L+ E E +++ D+K
Sbjct: 1308 YGDICVKYEEMSLTYKETSLKYEQIKVKYDEK 1339
>sp|A6NC98|CC88B_HUMAN Coiled-coil domain-containing protein 88B OS=Homo sapiens GN=CCDC88B
PE=1 SV=1
Length = 1476
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 162 RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221
R D H QR GLE + LQSE + + +++L E L +R L RL
Sbjct: 1143 RLMQDGHRQR--GLEEELRRLQSEHDR-------AQMLLAELSRERGELQGERGELRGRL 1193
Query: 222 KLLEADKDSWTQMESVS---KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278
LE ++ Q+E S +E+ L + +L Q L + R+ +ENRQL V
Sbjct: 1194 ARLELER---AQLEMQSQQLRESNQQLDLSACRLTTQCELLTQLRSAQEEENRQLLAEVQ 1250
Query: 279 SL----RSQL-SSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 327
+L R L S ES+ H EQ+++ Q+ A L E +LVEK+ D
Sbjct: 1251 ALSRENRELLERSLESRDHLHREQREYLDQLNA-------LRREKQKLVEKIMD 1297
>sp|Q4QRL3|CC88B_MOUSE Coiled-coil domain-containing protein 88B OS=Mus musculus GN=Ccdc88b
PE=1 SV=2
Length = 1481
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 162 RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221
R D H QR GLE + LQ+E E + L ++S+ R E L +R L RL
Sbjct: 1148 RLMQDGHRQR--GLEEELRRLQNEHE----RAQMLLAEVSRERGE---LQGERGELRSRL 1198
Query: 222 KLLEADKDSWTQMESVS---KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278
LE ++ Q+E S +E+ L + +L Q L + R+ +ENRQL V
Sbjct: 1199 ARLELER---AQLEIQSQQLRESNQQLDLSACRLTTQCELLTQLRSAQEEENRQLLAEVQ 1255
Query: 279 SL----RSQL-SSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 327
+L R L S ES+ H EQ+++ Q+ A L E +LVEK+ D
Sbjct: 1256 ALSRENRELLERSLESRDHLHREQREYLDQLNA-------LRREKQKLVEKIMD 1302
>sp|Q9Y592|CCD41_HUMAN Coiled-coil domain-containing protein 41 OS=Homo sapiens GN=CCDC41
PE=2 SV=2
Length = 693
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 24/218 (11%)
Query: 175 LEMNIANLQS---EKEFWLQKEAALEQKISQLRDESAALNMKRASLEE-RLKLLEADKDS 230
LE +A+L+ E + W Q E +Q +LR A + R L+ RLKL +
Sbjct: 393 LENRLADLEKMKVEHDVWRQSEK--DQYEEKLRASQMAEEITRKELQSVRLKL----QQQ 446
Query: 231 WTQMESVSKETI--AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL-------R 281
+E+ KE + L I+ L++QV L +S N+LL N+ LKE V L R
Sbjct: 447 IVTIENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFR 506
Query: 282 SQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGL 341
SQ + + T E+K +E L +++ EK N KL R ++A
Sbjct: 507 SQAEKAQLEAEKTLEEKQIQW-LEEKHKLHERITDRE----EKYNQAKEKLQRAAIAQKK 561
Query: 342 SSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGV 379
++ + + L E + + + + N L Q V
Sbjct: 562 RKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNV 599
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.122 0.314
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,232,781
Number of Sequences: 539616
Number of extensions: 6154366
Number of successful extensions: 37543
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 2599
Number of HSP's that attempted gapping in prelim test: 29348
Number of HSP's gapped (non-prelim): 7064
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)