Query 011943
Match_columns 474
No_of_seqs 61 out of 63
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0964 Structural maintenance 99.9 9.2E-20 2E-24 201.4 26.4 310 111-445 263-603 (1200)
2 TIGR02169 SMC_prok_A chromosom 98.7 2.8E-05 6E-10 88.4 32.8 35 294-328 447-481 (1164)
3 COG1196 Smc Chromosome segrega 98.7 6.8E-06 1.5E-10 95.9 28.4 177 150-332 296-483 (1163)
4 COG1196 Smc Chromosome segrega 98.6 0.00025 5.3E-09 83.2 35.6 117 216-338 804-927 (1163)
5 TIGR02168 SMC_prok_B chromosom 98.5 0.00023 4.9E-09 80.7 33.4 13 409-421 570-582 (1179)
6 TIGR02169 SMC_prok_A chromosom 98.5 0.00045 9.7E-09 78.8 34.5 53 139-191 291-343 (1164)
7 PF07888 CALCOCO1: Calcium bin 98.5 0.0026 5.6E-08 69.7 37.6 97 237-335 361-457 (546)
8 PF00038 Filament: Intermediat 98.4 0.002 4.4E-08 64.3 31.4 180 108-287 49-249 (312)
9 PF00038 Filament: Intermediat 98.1 0.0047 1E-07 61.7 28.4 98 86-186 48-151 (312)
10 PRK02224 chromosome segregatio 98.1 0.0032 7E-08 71.2 29.8 86 237-328 353-438 (880)
11 PF07888 CALCOCO1: Calcium bin 98.1 0.0092 2E-07 65.5 31.0 167 95-269 146-319 (546)
12 KOG0161 Myosin class II heavy 98.1 0.0091 2E-07 73.3 33.7 109 90-199 906-1014(1930)
13 PF09726 Macoilin: Transmembra 98.0 0.0048 1E-07 69.5 28.0 102 81-183 414-515 (697)
14 PRK11637 AmiB activator; Provi 97.9 0.011 2.3E-07 62.4 27.5 83 111-201 45-127 (428)
15 KOG0161 Myosin class II heavy 97.9 0.026 5.7E-07 69.5 33.4 192 139-331 891-1084(1930)
16 PHA02562 46 endonuclease subun 97.9 0.014 3E-07 62.5 27.8 26 139-164 217-242 (562)
17 PRK02224 chromosome segregatio 97.9 0.021 4.5E-07 64.8 30.2 14 440-453 814-828 (880)
18 PF00261 Tropomyosin: Tropomyo 97.8 0.015 3.3E-07 56.9 25.4 51 237-287 145-195 (237)
19 KOG4643 Uncharacterized coiled 97.8 0.01 2.2E-07 68.5 26.8 128 196-330 413-558 (1195)
20 PRK11637 AmiB activator; Provi 97.8 0.019 4E-07 60.6 26.7 14 115-128 56-69 (428)
21 TIGR00606 rad50 rad50. This fa 97.8 0.016 3.5E-07 69.2 28.9 96 114-210 823-921 (1311)
22 PF15070 GOLGA2L5: Putative go 97.8 0.031 6.6E-07 62.4 28.8 166 90-270 2-183 (617)
23 TIGR00606 rad50 rad50. This fa 97.7 0.055 1.2E-06 64.7 32.3 34 296-329 1048-1081(1311)
24 KOG0977 Nuclear envelope prote 97.7 0.02 4.4E-07 62.9 26.3 59 109-168 109-167 (546)
25 PF00261 Tropomyosin: Tropomyo 97.7 0.018 4E-07 56.4 23.5 46 242-287 171-216 (237)
26 PHA02562 46 endonuclease subun 97.7 0.016 3.5E-07 62.0 24.9 52 156-207 213-264 (562)
27 PF14915 CCDC144C: CCDC144C pr 97.6 0.031 6.6E-07 57.4 23.7 159 97-256 68-258 (305)
28 PF15070 GOLGA2L5: Putative go 97.6 0.027 5.9E-07 62.8 25.0 162 112-287 3-179 (617)
29 KOG4674 Uncharacterized conser 97.6 0.057 1.2E-06 66.1 29.2 194 78-278 1154-1363(1822)
30 PF09726 Macoilin: Transmembra 97.6 0.038 8.3E-07 62.5 26.3 92 237-328 542-655 (697)
31 COG1579 Zn-ribbon protein, pos 97.5 0.03 6.6E-07 55.9 21.7 161 114-317 11-171 (239)
32 KOG4674 Uncharacterized conser 97.5 0.18 3.8E-06 62.1 31.5 107 179-285 138-255 (1822)
33 KOG0250 DNA repair protein RAD 97.5 0.094 2E-06 61.4 27.9 87 138-224 231-328 (1074)
34 PF14915 CCDC144C: CCDC144C pr 97.5 0.13 2.9E-06 52.9 26.1 54 182-235 121-178 (305)
35 PRK03918 chromosome segregatio 97.4 0.25 5.4E-06 56.0 31.0 7 76-82 145-151 (880)
36 COG1340 Uncharacterized archae 97.4 0.24 5.2E-06 51.0 27.0 71 138-208 30-100 (294)
37 KOG0250 DNA repair protein RAD 97.3 0.32 7E-06 57.1 30.5 38 91-128 220-257 (1074)
38 KOG0996 Structural maintenance 97.3 0.14 2.9E-06 60.5 27.4 23 409-431 666-688 (1293)
39 KOG0976 Rho/Rac1-interacting s 97.3 0.2 4.4E-06 57.4 27.9 135 77-213 256-408 (1265)
40 KOG0996 Structural maintenance 97.3 0.19 4.1E-06 59.4 27.8 72 255-326 501-573 (1293)
41 PF14662 CCDC155: Coiled-coil 97.3 0.12 2.7E-06 50.2 22.2 174 91-284 14-188 (193)
42 PF08317 Spc7: Spc7 kinetochor 97.2 0.34 7.4E-06 49.8 28.6 113 171-287 150-263 (325)
43 PRK09039 hypothetical protein; 97.2 0.049 1.1E-06 56.6 20.2 122 158-287 62-184 (343)
44 PRK03918 chromosome segregatio 97.2 0.67 1.5E-05 52.6 32.4 29 138-166 196-224 (880)
45 COG1579 Zn-ribbon protein, pos 97.2 0.09 1.9E-06 52.6 20.9 87 235-327 84-174 (239)
46 PF15619 Lebercilin: Ciliary p 97.2 0.23 5E-06 48.1 23.1 88 114-209 13-100 (194)
47 KOG0980 Actin-binding protein 97.1 0.29 6.3E-06 56.5 26.8 197 111-317 363-562 (980)
48 PF09730 BicD: Microtubule-ass 97.1 0.092 2E-06 59.6 22.9 61 247-316 121-181 (717)
49 KOG0946 ER-Golgi vesicle-tethe 97.0 0.22 4.8E-06 57.1 24.6 55 111-166 662-716 (970)
50 PF12128 DUF3584: Protein of u 97.0 0.96 2.1E-05 54.1 31.3 71 189-266 723-797 (1201)
51 PRK01156 chromosome segregatio 97.0 0.96 2.1E-05 51.9 32.4 32 297-328 411-442 (895)
52 KOG0971 Microtubule-associated 97.0 0.49 1.1E-05 55.0 27.2 75 138-212 265-353 (1243)
53 KOG0971 Microtubule-associated 97.0 0.6 1.3E-05 54.3 27.2 48 115-163 306-353 (1243)
54 PF15066 CAGE1: Cancer-associa 96.9 0.54 1.2E-05 51.2 25.3 189 77-286 304-503 (527)
55 KOG0976 Rho/Rac1-interacting s 96.9 1.3 2.9E-05 51.1 32.2 193 105-305 84-308 (1265)
56 KOG0964 Structural maintenance 96.9 0.78 1.7E-05 53.7 27.2 184 105-307 299-486 (1200)
57 KOG0999 Microtubule-associated 96.9 0.48 1E-05 52.6 24.5 194 112-313 7-226 (772)
58 KOG0977 Nuclear envelope prote 96.8 0.21 4.5E-06 55.2 21.9 166 148-313 84-267 (546)
59 PF05667 DUF812: Protein of un 96.8 0.77 1.7E-05 51.4 26.6 116 156-271 394-529 (594)
60 PF12128 DUF3584: Protein of u 96.8 1.2 2.5E-05 53.4 29.6 97 94-191 609-706 (1201)
61 PF13851 GAS: Growth-arrest sp 96.8 0.58 1.2E-05 45.4 24.4 142 113-273 27-169 (201)
62 PRK09039 hypothetical protein; 96.8 0.18 3.8E-06 52.5 19.8 142 110-274 43-185 (343)
63 PF05622 HOOK: HOOK protein; 96.7 0.00036 7.9E-09 78.0 0.0 176 150-329 240-425 (713)
64 PF12718 Tropomyosin_1: Tropom 96.7 0.26 5.7E-06 45.5 18.6 30 138-167 3-32 (143)
65 PF13851 GAS: Growth-arrest sp 96.7 0.54 1.2E-05 45.6 21.5 105 92-215 27-131 (201)
66 KOG0612 Rho-associated, coiled 96.7 1 2.3E-05 53.7 27.3 19 195-213 585-603 (1317)
67 PF10174 Cast: RIM-binding pro 96.7 1.9 4.1E-05 49.8 28.5 28 108-135 240-267 (775)
68 PF08317 Spc7: Spc7 kinetochor 96.6 1.1 2.3E-05 46.2 24.6 47 179-225 151-197 (325)
69 PF04849 HAP1_N: HAP1 N-termin 96.6 0.33 7.1E-06 50.3 19.7 177 117-306 94-287 (306)
70 KOG0946 ER-Golgi vesicle-tethe 96.5 0.84 1.8E-05 52.6 24.2 171 107-286 644-824 (970)
71 PRK04863 mukB cell division pr 96.5 3.5 7.6E-05 50.8 31.2 137 150-287 349-489 (1486)
72 PRK04778 septation ring format 96.5 1.9 4.1E-05 47.6 26.3 125 159-286 379-508 (569)
73 PF14662 CCDC155: Coiled-coil 96.4 1 2.2E-05 44.0 24.0 129 189-325 58-188 (193)
74 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.26 5.6E-06 44.5 16.1 121 177-306 3-130 (132)
75 PRK04863 mukB cell division pr 96.4 4 8.7E-05 50.3 33.5 136 88-224 317-475 (1486)
76 PRK04778 septation ring format 96.3 2.3 5E-05 47.0 26.8 246 87-332 114-427 (569)
77 KOG0978 E3 ubiquitin ligase in 96.3 2.8 6.1E-05 47.9 31.2 210 117-333 397-618 (698)
78 KOG1029 Endocytic adaptor prot 96.3 3 6.5E-05 48.2 27.7 96 189-284 484-579 (1118)
79 PF05667 DUF812: Protein of un 96.2 2.7 5.8E-05 47.2 26.0 40 290-329 514-553 (594)
80 PF05483 SCP-1: Synaptonemal c 96.2 3 6.6E-05 47.5 32.5 222 113-335 310-560 (786)
81 KOG0612 Rho-associated, coiled 96.2 2.5 5.5E-05 50.6 26.3 26 313-338 746-771 (1317)
82 COG1340 Uncharacterized archae 96.2 1.9 4.1E-05 44.6 28.7 73 91-164 12-84 (294)
83 PF05483 SCP-1: Synaptonemal c 96.2 3.3 7.2E-05 47.2 31.4 70 136-205 493-562 (786)
84 PF05622 HOOK: HOOK protein; 96.1 0.0015 3.2E-08 73.2 0.0 107 118-224 313-424 (713)
85 KOG0018 Structural maintenance 96.1 1.8 3.9E-05 51.2 24.3 240 91-339 198-481 (1141)
86 KOG0933 Structural maintenance 96.0 4.8 0.0001 47.7 31.6 18 112-129 707-724 (1174)
87 KOG4643 Uncharacterized coiled 96.0 4.8 0.0001 47.7 30.6 48 237-284 513-560 (1195)
88 KOG4673 Transcription factor T 95.9 4.4 9.4E-05 46.4 29.2 98 104-208 407-505 (961)
89 KOG1853 LIS1-interacting prote 95.9 2.3 5E-05 43.5 21.2 121 160-297 35-156 (333)
90 COG4372 Uncharacterized protei 95.9 3.3 7.1E-05 44.6 25.7 160 121-287 103-264 (499)
91 PF05010 TACC: Transforming ac 95.9 2.1 4.5E-05 42.2 24.9 134 130-284 64-205 (207)
92 smart00787 Spc7 Spc7 kinetocho 95.8 2.8 6.1E-05 43.4 26.1 109 175-287 149-258 (312)
93 PF08614 ATG16: Autophagy prot 95.8 0.07 1.5E-06 50.9 9.7 72 247-324 109-180 (194)
94 PF09789 DUF2353: Uncharacteri 95.8 1.3 2.7E-05 46.3 19.4 33 248-280 190-222 (319)
95 KOG0963 Transcription factor/C 95.7 4.8 0.0001 45.4 26.2 79 104-188 136-214 (629)
96 TIGR03185 DNA_S_dndD DNA sulfu 95.7 4.7 0.0001 45.1 27.4 72 113-188 209-280 (650)
97 PF12718 Tropomyosin_1: Tropom 95.6 1.3 2.9E-05 40.8 17.0 39 240-278 101-139 (143)
98 KOG0933 Structural maintenance 95.6 7.1 0.00015 46.4 32.2 26 304-329 908-933 (1174)
99 KOG4593 Mitotic checkpoint pro 95.6 5.8 0.00013 45.3 30.8 160 112-273 107-270 (716)
100 KOG0978 E3 ubiquitin ligase in 95.5 6 0.00013 45.3 28.0 177 110-287 405-599 (698)
101 PF01576 Myosin_tail_1: Myosin 95.5 0.0038 8.2E-08 71.7 0.0 101 237-337 261-370 (859)
102 PRK01156 chromosome segregatio 95.4 6.7 0.00014 45.2 32.0 26 75-100 148-181 (895)
103 KOG1899 LAR transmembrane tyro 95.4 6.4 0.00014 44.7 25.1 24 89-112 108-132 (861)
104 KOG4673 Transcription factor T 95.4 6.8 0.00015 44.9 29.2 24 78-103 404-427 (961)
105 COG4942 Membrane-bound metallo 95.4 5.1 0.00011 43.4 25.3 45 234-278 171-216 (420)
106 smart00787 Spc7 Spc7 kinetocho 95.3 1.5 3.2E-05 45.5 18.1 114 110-224 141-258 (312)
107 PF10174 Cast: RIM-binding pro 95.3 7.7 0.00017 45.0 30.4 97 210-317 303-400 (775)
108 KOG1029 Endocytic adaptor prot 95.3 4.1 8.8E-05 47.2 22.4 61 225-285 435-496 (1118)
109 PF01576 Myosin_tail_1: Myosin 95.3 0.0049 1.1E-07 70.8 0.0 177 147-329 262-446 (859)
110 PF10473 CENP-F_leu_zip: Leuci 95.2 2 4.3E-05 40.0 16.9 102 171-287 4-106 (140)
111 PF10473 CENP-F_leu_zip: Leuci 95.2 2.7 6E-05 39.1 18.3 105 158-262 12-116 (140)
112 PF09730 BicD: Microtubule-ass 95.2 3.5 7.6E-05 47.3 21.9 86 107-193 28-113 (717)
113 PF04111 APG6: Autophagy prote 95.1 0.3 6.4E-06 50.4 12.4 51 174-224 40-90 (314)
114 PF08614 ATG16: Autophagy prot 95.1 0.16 3.5E-06 48.4 9.9 33 178-210 145-177 (194)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.9 2.8 6.1E-05 37.8 18.9 31 249-279 100-130 (132)
116 PF05701 WEMBL: Weak chloropla 94.9 7.7 0.00017 42.7 32.4 18 66-83 45-62 (522)
117 COG4942 Membrane-bound metallo 94.8 7.4 0.00016 42.2 25.5 77 97-184 50-126 (420)
118 KOG0979 Structural maintenance 94.7 9.7 0.00021 45.2 24.0 46 244-289 315-360 (1072)
119 COG3883 Uncharacterized protei 94.7 5.8 0.00013 40.6 23.9 67 137-203 33-99 (265)
120 PF05557 MAD: Mitotic checkpoi 94.7 0.0087 1.9E-07 67.2 0.0 66 215-280 308-383 (722)
121 PF10168 Nup88: Nuclear pore c 94.6 3 6.4E-05 47.8 19.6 25 256-280 687-711 (717)
122 PF10226 DUF2216: Uncharacteri 94.5 1.9 4.2E-05 42.1 15.4 90 242-337 57-146 (195)
123 PF04111 APG6: Autophagy prote 94.5 0.76 1.6E-05 47.4 13.4 96 107-203 37-132 (314)
124 PRK15422 septal ring assembly 94.4 0.24 5.2E-06 42.0 8.0 54 234-287 18-72 (79)
125 COG4372 Uncharacterized protei 94.3 9.2 0.0002 41.4 29.0 168 118-286 79-249 (499)
126 COG3074 Uncharacterized protei 94.3 0.27 5.9E-06 41.1 7.9 51 237-287 22-72 (79)
127 PF04849 HAP1_N: HAP1 N-termin 94.2 8.2 0.00018 40.3 21.6 126 194-328 163-288 (306)
128 KOG0999 Microtubule-associated 93.8 14 0.00031 41.5 27.3 24 109-132 46-69 (772)
129 PF09789 DUF2353: Uncharacteri 93.6 11 0.00023 39.6 21.0 18 312-329 192-209 (319)
130 PF15294 Leu_zip: Leucine zipp 93.4 7.7 0.00017 40.0 18.0 82 97-188 118-208 (278)
131 TIGR01843 type_I_hlyD type I s 93.3 11 0.00023 38.7 22.8 22 325-346 262-283 (423)
132 KOG0804 Cytoplasmic Zn-finger 93.3 2.4 5.3E-05 46.2 14.8 38 248-285 415-452 (493)
133 KOG0979 Structural maintenance 93.3 23 0.00049 42.3 25.0 84 77-161 616-704 (1072)
134 PRK10929 putative mechanosensi 93.3 22 0.00049 42.9 24.0 43 237-279 191-233 (1109)
135 TIGR03007 pepcterm_ChnLen poly 93.2 13 0.00027 39.9 20.2 26 107-132 162-187 (498)
136 PF05557 MAD: Mitotic checkpoi 93.1 0.097 2.1E-06 59.0 4.5 32 296-327 504-535 (722)
137 PF09728 Taxilin: Myosin-like 93.1 12 0.00027 38.6 32.4 120 89-215 54-177 (309)
138 PF05911 DUF869: Plant protein 93.0 8.6 0.00019 44.6 19.6 189 138-336 519-714 (769)
139 PF04012 PspA_IM30: PspA/IM30 93.0 9 0.00019 36.8 22.3 100 107-207 24-128 (221)
140 KOG1103 Predicted coiled-coil 92.9 7.3 0.00016 41.7 17.3 174 92-287 118-292 (561)
141 PF05701 WEMBL: Weak chloropla 92.7 18 0.0004 39.8 31.7 36 141-176 210-245 (522)
142 PF10168 Nup88: Nuclear pore c 92.7 13 0.00028 42.8 20.4 29 133-161 563-591 (717)
143 PF13870 DUF4201: Domain of un 92.6 8.9 0.00019 35.9 20.8 106 110-215 17-122 (177)
144 PF11559 ADIP: Afadin- and alp 92.5 5.6 0.00012 36.2 14.3 53 151-203 54-106 (151)
145 TIGR01005 eps_transp_fam exopo 92.4 23 0.0005 40.1 22.5 30 138-167 197-226 (754)
146 KOG0980 Actin-binding protein 92.4 28 0.00061 41.1 26.5 128 180-316 413-543 (980)
147 KOG0249 LAR-interacting protei 92.4 5.4 0.00012 45.8 16.4 49 254-308 209-257 (916)
148 COG5185 HEC1 Protein involved 92.3 22 0.00047 39.5 20.6 132 154-285 293-427 (622)
149 KOG0994 Extracellular matrix g 92.3 34 0.00074 41.7 24.2 72 116-188 1566-1637(1758)
150 KOG0018 Structural maintenance 92.0 34 0.00075 41.1 27.8 109 73-188 649-757 (1141)
151 PLN03229 acetyl-coenzyme A car 91.9 29 0.00064 40.3 22.1 77 89-165 459-544 (762)
152 PF12325 TMF_TATA_bd: TATA ele 91.8 7.4 0.00016 35.3 13.9 44 244-287 65-108 (120)
153 KOG1853 LIS1-interacting prote 91.7 18 0.00038 37.3 18.0 82 127-211 44-125 (333)
154 PRK11281 hypothetical protein; 91.6 39 0.00084 41.0 23.8 48 84-132 59-106 (1113)
155 PF06005 DUF904: Protein of un 91.5 3.3 7.2E-05 34.5 10.4 67 135-201 4-70 (72)
156 PF06160 EzrA: Septation ring 91.4 27 0.00059 38.8 21.6 83 111-203 250-332 (560)
157 TIGR03185 DNA_S_dndD DNA sulfu 91.4 29 0.00062 39.0 27.3 23 179-201 264-286 (650)
158 COG4717 Uncharacterized conser 91.4 36 0.00079 40.2 26.7 231 78-322 556-838 (984)
159 PLN03229 acetyl-coenzyme A car 91.2 34 0.00075 39.7 23.2 78 110-188 433-522 (762)
160 TIGR01005 eps_transp_fam exopo 91.0 14 0.00031 41.8 18.4 23 109-131 197-219 (754)
161 PF10146 zf-C4H2: Zinc finger- 91.0 5.7 0.00012 39.7 13.5 61 220-280 33-93 (230)
162 PF06160 EzrA: Septation ring 90.9 30 0.00065 38.5 28.4 248 85-332 108-423 (560)
163 KOG0963 Transcription factor/C 90.7 35 0.00075 38.9 31.4 43 421-465 541-592 (629)
164 PF05911 DUF869: Plant protein 90.7 39 0.00085 39.4 23.1 85 189-276 90-177 (769)
165 KOG0804 Cytoplasmic Zn-finger 90.7 9.6 0.00021 41.8 15.6 19 138-156 328-346 (493)
166 PF06005 DUF904: Protein of un 90.6 2.1 4.6E-05 35.6 8.5 33 245-277 37-69 (72)
167 COG0419 SbcC ATPase involved i 90.6 40 0.00088 39.4 28.2 21 111-131 230-250 (908)
168 PF06705 SF-assemblin: SF-asse 90.5 19 0.00041 35.6 31.1 224 87-331 7-237 (247)
169 PF15619 Lebercilin: Ciliary p 90.3 19 0.00041 35.1 21.3 88 93-188 13-100 (194)
170 COG1842 PspA Phage shock prote 90.1 21 0.00046 35.5 18.5 52 234-285 92-144 (225)
171 PF12329 TMF_DNA_bd: TATA elem 90.0 4.1 8.8E-05 33.9 9.7 65 146-210 2-66 (74)
172 PF09738 DUF2051: Double stran 90.0 20 0.00044 37.3 16.9 77 119-210 83-159 (302)
173 PF09304 Cortex-I_coil: Cortex 90.0 8.4 0.00018 34.6 12.2 65 144-208 11-75 (107)
174 KOG0995 Centromere-associated 89.9 39 0.00085 38.1 28.8 108 104-219 257-367 (581)
175 TIGR01843 type_I_hlyD type I s 89.6 27 0.00058 35.8 21.0 23 263-285 248-270 (423)
176 PRK10929 putative mechanosensi 89.5 58 0.0013 39.6 28.0 47 83-130 43-89 (1109)
177 COG3074 Uncharacterized protei 89.5 5.1 0.00011 33.7 9.8 67 137-203 6-72 (79)
178 PF11932 DUF3450: Protein of u 89.4 15 0.00032 36.3 15.0 40 302-344 128-167 (251)
179 PF05010 TACC: Transforming ac 89.2 24 0.00053 34.8 26.7 70 134-206 29-98 (207)
180 KOG1003 Actin filament-coating 88.9 26 0.00056 34.8 22.2 95 112-207 52-153 (205)
181 PF09755 DUF2046: Uncharacteri 88.8 34 0.00073 36.0 20.9 39 296-334 164-203 (310)
182 KOG0962 DNA repair protein RAD 88.5 71 0.0015 39.4 26.2 63 225-287 849-911 (1294)
183 PRK10361 DNA recombination pro 88.5 44 0.00096 36.9 23.7 64 182-260 97-160 (475)
184 TIGR03007 pepcterm_ChnLen poly 88.4 39 0.00086 36.2 24.7 68 136-203 162-230 (498)
185 COG3883 Uncharacterized protei 88.3 33 0.00072 35.3 21.9 49 111-160 50-98 (265)
186 PRK10698 phage shock protein P 88.2 28 0.00061 34.3 21.6 107 108-215 26-137 (222)
187 PF07111 HCR: Alpha helical co 88.0 58 0.0013 37.7 29.5 80 90-170 336-415 (739)
188 KOG0995 Centromere-associated 87.5 56 0.0012 37.0 31.9 92 142-233 259-360 (581)
189 PLN03188 kinesin-12 family pro 87.4 55 0.0012 40.2 20.0 83 104-194 875-957 (1320)
190 COG5185 HEC1 Protein involved 87.4 53 0.0012 36.6 23.2 88 93-181 272-362 (622)
191 TIGR02449 conserved hypothetic 87.1 4.2 9.1E-05 33.5 7.8 57 250-312 3-59 (65)
192 PF02090 SPAM: Salmonella surf 86.8 28 0.00062 32.9 15.7 118 138-261 26-145 (147)
193 TIGR02680 conserved hypothetic 86.6 91 0.002 38.5 23.9 68 58-147 708-775 (1353)
194 TIGR02977 phageshock_pspA phag 86.5 34 0.00073 33.4 20.2 108 107-215 25-137 (219)
195 PF11932 DUF3450: Protein of u 86.4 36 0.00079 33.6 17.8 25 138-162 45-69 (251)
196 PF15066 CAGE1: Cancer-associa 86.3 60 0.0013 36.1 24.0 36 89-128 342-377 (527)
197 PF12329 TMF_DNA_bd: TATA elem 86.2 6.9 0.00015 32.5 8.8 59 220-278 13-71 (74)
198 KOG4302 Microtubule-associated 86.2 42 0.00092 38.5 17.6 141 184-332 54-197 (660)
199 KOG4360 Uncharacterized coiled 86.0 24 0.00052 39.4 15.0 126 79-205 153-303 (596)
200 PF09403 FadA: Adhesion protei 85.8 27 0.00058 32.1 13.1 64 173-236 23-91 (126)
201 PF09787 Golgin_A5: Golgin sub 85.5 62 0.0013 35.6 24.9 26 256-281 357-382 (511)
202 PF04012 PspA_IM30: PspA/IM30 85.4 36 0.00078 32.7 21.1 126 137-285 18-143 (221)
203 PRK10698 phage shock protein P 85.3 41 0.00088 33.2 19.3 115 90-207 36-150 (222)
204 PRK15422 septal ring assembly 85.3 9.6 0.00021 32.6 9.2 63 137-199 6-75 (79)
205 PLN02939 transferase, transfer 85.0 96 0.0021 37.3 28.4 69 248-318 325-399 (977)
206 PF10234 Cluap1: Clusterin-ass 85.0 34 0.00074 35.1 14.8 51 237-287 166-216 (267)
207 PF11559 ADIP: Afadin- and alp 84.9 16 0.00036 33.2 11.5 15 311-325 135-149 (151)
208 PF14197 Cep57_CLD_2: Centroso 84.9 10 0.00022 31.4 9.0 56 111-167 3-58 (69)
209 KOG4603 TBP-1 interacting prot 84.6 20 0.00043 35.0 12.2 66 222-287 71-142 (201)
210 PF09755 DUF2046: Uncharacteri 84.5 57 0.0012 34.3 31.7 62 88-149 30-98 (310)
211 COG0419 SbcC ATPase involved i 84.5 91 0.002 36.6 34.4 17 112-128 500-516 (908)
212 PF06785 UPF0242: Uncharacteri 84.5 62 0.0013 34.7 20.9 19 85-103 68-86 (401)
213 KOG0249 LAR-interacting protei 84.4 87 0.0019 36.7 18.7 55 220-274 203-257 (916)
214 PRK10884 SH3 domain-containing 84.2 12 0.00026 36.7 10.9 78 237-323 90-167 (206)
215 PF10146 zf-C4H2: Zinc finger- 83.0 39 0.00085 33.9 14.0 40 244-283 64-103 (230)
216 PF07989 Microtub_assoc: Micro 82.1 9 0.0002 32.1 7.8 69 195-263 4-73 (75)
217 PRK03947 prefoldin subunit alp 82.1 37 0.00079 30.6 12.4 33 175-207 11-43 (140)
218 PF10481 CENP-F_N: Cenp-F N-te 81.5 72 0.0016 33.3 19.5 156 147-317 16-184 (307)
219 PF07106 TBPIP: Tat binding pr 81.4 33 0.00073 31.9 12.3 35 176-210 71-105 (169)
220 PF10186 Atg14: UV radiation r 81.3 57 0.0012 31.9 17.4 25 179-203 22-46 (302)
221 PF09728 Taxilin: Myosin-like 81.3 72 0.0016 33.1 30.2 67 102-169 25-91 (309)
222 KOG2991 Splicing regulator [RN 81.1 74 0.0016 33.1 23.2 97 106-210 101-203 (330)
223 PF06705 SF-assemblin: SF-asse 81.0 61 0.0013 32.1 28.8 122 87-208 36-163 (247)
224 KOG0994 Extracellular matrix g 80.8 1.5E+02 0.0033 36.6 25.8 17 113-129 1511-1527(1758)
225 KOG4360 Uncharacterized coiled 80.5 1.1E+02 0.0023 34.6 19.5 21 193-213 161-181 (596)
226 PF14197 Cep57_CLD_2: Centroso 80.5 19 0.00041 29.8 9.1 59 134-192 4-62 (69)
227 KOG3091 Nuclear pore complex, 80.4 77 0.0017 35.3 16.1 32 189-224 409-440 (508)
228 TIGR01000 bacteriocin_acc bact 80.4 88 0.0019 33.6 22.3 19 328-346 310-328 (457)
229 PF05384 DegS: Sensor protein 80.2 55 0.0012 31.2 18.5 96 184-279 27-123 (159)
230 PF08581 Tup_N: Tup N-terminal 79.9 37 0.00079 28.9 10.9 72 112-187 3-74 (79)
231 KOG2398 Predicted proline-seri 79.9 1.2E+02 0.0026 34.7 19.4 68 190-257 149-217 (611)
232 COG2433 Uncharacterized conser 79.7 24 0.00051 40.1 12.2 33 175-207 427-459 (652)
233 PF00769 ERM: Ezrin/radixin/mo 79.2 73 0.0016 31.9 16.0 23 138-160 15-37 (246)
234 KOG0982 Centrosomal protein Nu 79.2 1.1E+02 0.0023 33.9 19.7 48 156-203 339-386 (502)
235 PF09787 Golgin_A5: Golgin sub 79.0 1.1E+02 0.0023 33.8 29.4 129 88-225 126-259 (511)
236 KOG0239 Kinesin (KAR3 subfamil 78.1 1.4E+02 0.003 34.5 18.6 87 138-224 178-267 (670)
237 KOG0288 WD40 repeat protein Ti 78.0 1.1E+02 0.0023 33.8 15.9 36 245-280 74-109 (459)
238 PF08581 Tup_N: Tup N-terminal 77.9 16 0.00035 31.0 8.1 66 239-306 10-75 (79)
239 PF13514 AAA_27: AAA domain 77.2 1.7E+02 0.0038 35.1 26.6 62 249-314 891-952 (1111)
240 PF15397 DUF4618: Domain of un 76.9 94 0.002 31.9 26.2 12 269-280 187-198 (258)
241 PRK11519 tyrosine kinase; Prov 76.4 1.1E+02 0.0024 35.0 16.7 34 134-167 266-299 (719)
242 KOG1899 LAR transmembrane tyro 76.3 25 0.00055 40.2 11.2 86 217-308 109-194 (861)
243 PF06156 DUF972: Protein of un 76.2 8.4 0.00018 34.3 6.2 50 238-287 6-55 (107)
244 PF10186 Atg14: UV radiation r 75.8 83 0.0018 30.8 17.0 19 115-133 29-47 (302)
245 PF09304 Cortex-I_coil: Cortex 74.9 65 0.0014 29.1 12.4 71 215-285 19-89 (107)
246 PF02841 GBP_C: Guanylate-bind 74.6 1E+02 0.0022 31.3 18.8 25 209-233 233-261 (297)
247 KOG0240 Kinesin (SMY1 subfamil 74.4 1.6E+02 0.0036 33.5 17.2 43 60-106 240-282 (607)
248 PRK06975 bifunctional uroporph 73.9 1.4E+02 0.003 34.1 16.5 50 194-243 381-430 (656)
249 PF07106 TBPIP: Tat binding pr 73.8 8.9 0.00019 35.7 6.1 21 241-261 80-100 (169)
250 TIGR01000 bacteriocin_acc bact 73.2 1.4E+02 0.003 32.1 22.9 10 409-418 393-402 (457)
251 PF09738 DUF2051: Double stran 73.0 54 0.0012 34.2 12.0 26 311-336 221-246 (302)
252 PF00769 ERM: Ezrin/radixin/mo 72.9 1.1E+02 0.0023 30.8 15.9 75 133-207 38-112 (246)
253 PLN02939 transferase, transfer 72.8 2.2E+02 0.0049 34.4 26.6 73 251-323 355-453 (977)
254 PF04582 Reo_sigmaC: Reovirus 72.0 6.7 0.00015 41.2 5.3 8 411-418 252-259 (326)
255 KOG1850 Myosin-like coiled-coi 72.0 1.5E+02 0.0032 31.8 28.7 235 91-334 55-331 (391)
256 KOG0240 Kinesin (SMY1 subfamil 71.1 1.9E+02 0.0042 33.0 20.4 26 77-102 347-372 (607)
257 PF01920 Prefoldin_2: Prefoldi 71.1 54 0.0012 27.4 9.8 42 237-278 59-100 (106)
258 PF02403 Seryl_tRNA_N: Seryl-t 71.0 28 0.0006 29.9 8.1 29 245-273 34-62 (108)
259 KOG1003 Actin filament-coating 71.0 1.2E+02 0.0025 30.3 22.9 43 237-279 113-155 (205)
260 PF08647 BRE1: BRE1 E3 ubiquit 70.8 69 0.0015 27.6 11.7 32 196-227 8-39 (96)
261 PF07889 DUF1664: Protein of u 70.7 88 0.0019 28.8 11.7 54 237-290 72-125 (126)
262 cd00584 Prefoldin_alpha Prefol 70.4 44 0.00095 29.5 9.5 100 175-285 4-125 (129)
263 PF04912 Dynamitin: Dynamitin 70.3 1.5E+02 0.0033 31.4 15.6 139 145-287 205-362 (388)
264 KOG4603 TBP-1 interacting prot 70.3 30 0.00064 33.9 8.8 66 235-306 74-141 (201)
265 PF12325 TMF_TATA_bd: TATA ele 70.2 87 0.0019 28.5 14.6 14 175-188 21-34 (120)
266 KOG3990 Uncharacterized conser 70.2 52 0.0011 34.0 10.8 84 59-155 208-294 (305)
267 PF03962 Mnd1: Mnd1 family; I 69.8 65 0.0014 31.1 11.1 85 114-203 77-161 (188)
268 PRK09841 cryptic autophosphory 69.3 2.2E+02 0.0047 32.8 18.0 87 108-198 243-332 (726)
269 PF06818 Fez1: Fez1; InterPro 69.1 1.3E+02 0.0027 30.0 16.8 95 115-210 12-106 (202)
270 COG1382 GimC Prefoldin, chaper 69.0 88 0.0019 28.7 11.1 40 173-212 73-112 (119)
271 PF06156 DUF972: Protein of un 68.2 19 0.00041 32.1 6.6 35 294-328 21-55 (107)
272 PF05529 Bap31: B-cell recepto 68.0 24 0.00053 33.4 7.8 15 220-234 94-108 (192)
273 PRK10803 tol-pal system protei 67.7 25 0.00054 35.4 8.2 62 154-215 38-99 (263)
274 PF12761 End3: Actin cytoskele 67.6 50 0.0011 32.6 9.9 38 237-274 157-194 (195)
275 PRK11281 hypothetical protein; 67.5 3E+02 0.0066 33.8 26.3 30 250-279 223-252 (1113)
276 KOG2751 Beclin-like protein [S 67.2 2E+02 0.0044 31.7 15.2 67 186-259 199-265 (447)
277 KOG4302 Microtubule-associated 66.4 2.5E+02 0.0055 32.5 20.8 190 137-333 56-264 (660)
278 PF05700 BCAS2: Breast carcino 66.0 63 0.0014 31.7 10.4 81 111-202 141-221 (221)
279 COG5293 Predicted ATPase [Gene 65.9 2.3E+02 0.005 31.8 23.6 146 141-287 227-405 (591)
280 PRK10246 exonuclease subunit S 65.9 3E+02 0.0065 33.1 28.2 10 25-34 505-514 (1047)
281 PF08826 DMPK_coil: DMPK coile 65.8 36 0.00078 27.7 7.2 44 238-281 16-59 (61)
282 PF12240 Angiomotin_C: Angiomo 65.6 1.5E+02 0.0033 29.6 15.4 131 148-286 27-168 (205)
283 COG4026 Uncharacterized protei 65.6 44 0.00095 34.1 9.2 14 296-309 192-205 (290)
284 PF04871 Uso1_p115_C: Uso1 / p 65.6 1.1E+02 0.0024 28.1 12.9 30 299-328 81-110 (136)
285 PF13166 AAA_13: AAA domain 65.3 2.4E+02 0.0051 31.7 23.4 22 444-465 632-654 (712)
286 PRK00409 recombination and DNA 65.1 1.6E+02 0.0034 34.5 14.9 74 181-254 517-591 (782)
287 PF15254 CCDC14: Coiled-coil d 64.9 3E+02 0.0064 32.7 18.1 73 241-313 428-512 (861)
288 PF07111 HCR: Alpha helical co 64.2 2.9E+02 0.0063 32.4 23.6 167 155-332 136-322 (739)
289 TIGR02977 phageshock_pspA phag 64.0 1.5E+02 0.0032 28.9 19.6 53 140-192 22-74 (219)
290 KOG4807 F-actin binding protei 63.7 2.4E+02 0.0051 31.2 17.0 168 111-286 296-481 (593)
291 PF06785 UPF0242: Uncharacteri 63.6 2.2E+02 0.0047 30.7 19.3 52 234-285 127-179 (401)
292 TIGR01069 mutS2 MutS2 family p 63.2 1.3E+02 0.0028 35.1 13.7 55 182-236 513-567 (771)
293 KOG0993 Rab5 GTPase effector R 62.5 2.5E+02 0.0055 31.1 20.0 27 96-122 303-329 (542)
294 KOG2751 Beclin-like protein [S 62.2 2.1E+02 0.0046 31.6 14.2 74 239-318 196-269 (447)
295 PF07889 DUF1664: Protein of u 62.1 1.3E+02 0.0029 27.7 11.4 64 141-204 60-123 (126)
296 KOG4809 Rab6 GTPase-interactin 62.1 2.9E+02 0.0062 31.6 20.4 58 151-208 354-411 (654)
297 PF11802 CENP-K: Centromere-as 61.9 2E+02 0.0044 29.8 16.1 160 139-323 20-182 (268)
298 COG4026 Uncharacterized protei 61.9 61 0.0013 33.1 9.4 24 305-328 180-203 (290)
299 PRK13169 DNA replication intia 60.6 36 0.00079 30.6 6.9 46 240-285 8-53 (110)
300 TIGR02338 gimC_beta prefoldin, 60.5 1.2E+02 0.0025 26.6 11.0 38 173-210 70-107 (110)
301 TIGR02338 gimC_beta prefoldin, 60.4 1.2E+02 0.0025 26.6 11.7 38 248-285 68-105 (110)
302 COG2433 Uncharacterized conser 60.3 2.5E+02 0.0053 32.4 14.6 8 68-75 318-325 (652)
303 PF15397 DUF4618: Domain of un 60.2 2.1E+02 0.0046 29.5 25.6 50 238-287 177-226 (258)
304 TIGR02449 conserved hypothetic 60.1 68 0.0015 26.5 7.9 35 138-172 17-51 (65)
305 PF03915 AIP3: Actin interacti 60.0 2.7E+02 0.0058 30.6 15.5 63 246-314 245-308 (424)
306 PF09744 Jnk-SapK_ap_N: JNK_SA 60.0 1.6E+02 0.0035 28.0 15.0 96 97-193 41-140 (158)
307 PRK10920 putative uroporphyrin 59.7 2.6E+02 0.0056 30.3 14.5 57 189-245 90-147 (390)
308 KOG2150 CCR4-NOT transcription 59.6 3.1E+02 0.0068 31.3 15.6 187 138-338 4-212 (575)
309 PF03962 Mnd1: Mnd1 family; I 59.5 84 0.0018 30.4 9.8 49 237-285 73-127 (188)
310 PRK04406 hypothetical protein; 58.6 71 0.0015 26.8 7.9 51 112-163 3-53 (75)
311 PF06103 DUF948: Bacterial pro 58.6 98 0.0021 25.8 8.9 42 238-279 24-65 (90)
312 KOG4593 Mitotic checkpoint pro 58.5 3.6E+02 0.0078 31.6 28.9 46 232-277 184-230 (716)
313 PRK13169 DNA replication intia 58.5 36 0.00077 30.7 6.6 35 294-328 21-55 (110)
314 PF10211 Ax_dynein_light: Axon 58.3 1.8E+02 0.0039 28.1 13.8 60 136-201 128-187 (189)
315 PF01920 Prefoldin_2: Prefoldi 58.2 1.1E+02 0.0024 25.5 10.8 39 170-208 62-100 (106)
316 PF08647 BRE1: BRE1 E3 ubiquit 58.1 1.2E+02 0.0027 26.1 11.0 43 237-279 28-70 (96)
317 KOG0243 Kinesin-like protein [ 58.1 4.3E+02 0.0093 32.3 25.0 94 113-206 404-512 (1041)
318 TIGR03752 conj_TIGR03752 integ 58.0 84 0.0018 34.9 10.5 28 357-384 232-261 (472)
319 PF03148 Tektin: Tektin family 57.5 2.6E+02 0.0057 29.7 28.4 106 225-330 233-370 (384)
320 KOG0239 Kinesin (KAR3 subfamil 57.1 3.6E+02 0.0079 31.2 19.1 26 297-323 289-314 (670)
321 PF04582 Reo_sigmaC: Reovirus 57.1 15 0.00032 38.7 4.5 45 241-285 57-101 (326)
322 PF13870 DUF4201: Domain of un 56.9 1.7E+02 0.0037 27.4 18.9 40 237-276 95-134 (177)
323 TIGR03752 conj_TIGR03752 integ 56.9 83 0.0018 34.9 10.2 39 247-285 59-97 (472)
324 PRK03947 prefoldin subunit alp 56.7 1.5E+02 0.0033 26.6 14.0 45 169-213 93-137 (140)
325 PRK10361 DNA recombination pro 55.8 3.3E+02 0.0072 30.4 22.7 7 218-224 146-152 (475)
326 TIGR02231 conserved hypothetic 55.8 1.3E+02 0.0029 32.8 11.7 40 239-278 130-169 (525)
327 PRK04406 hypothetical protein; 55.5 60 0.0013 27.2 7.0 29 252-280 9-37 (75)
328 COG4477 EzrA Negative regulato 55.2 3.7E+02 0.0079 30.7 23.0 33 175-207 279-314 (570)
329 TIGR02231 conserved hypothetic 54.6 1.4E+02 0.0031 32.6 11.7 12 443-454 377-388 (525)
330 PF10481 CENP-F_N: Cenp-F N-te 54.2 2.8E+02 0.0062 29.1 19.3 102 231-332 64-192 (307)
331 cd00632 Prefoldin_beta Prefold 53.8 1.5E+02 0.0032 25.6 12.6 29 178-206 7-35 (105)
332 PF02183 HALZ: Homeobox associ 53.7 34 0.00075 26.1 4.9 40 293-332 3-42 (45)
333 PF08232 Striatin: Striatin fa 53.4 74 0.0016 29.2 7.9 35 216-250 8-42 (134)
334 PF10267 Tmemb_cc2: Predicted 52.6 3.4E+02 0.0074 29.5 13.9 27 115-142 214-240 (395)
335 PF02090 SPAM: Salmonella surf 52.5 2.1E+02 0.0046 27.2 14.1 92 175-280 21-113 (147)
336 KOG0962 DNA repair protein RAD 52.1 5.8E+02 0.013 32.0 30.6 31 105-135 818-848 (1294)
337 TIGR00634 recN DNA repair prot 51.7 3.8E+02 0.0082 29.8 18.4 24 438-461 463-486 (563)
338 TIGR01010 BexC_CtrB_KpsE polys 51.7 2.9E+02 0.0064 28.5 18.1 34 134-167 169-202 (362)
339 KOG4677 Golgi integral membran 51.4 4E+02 0.0086 29.9 24.4 67 158-224 311-381 (554)
340 KOG1937 Uncharacterized conser 51.2 4E+02 0.0086 29.9 22.2 32 298-329 399-430 (521)
341 PF12252 SidE: Dot/Icm substra 50.8 5.8E+02 0.013 31.7 17.5 82 219-302 1222-1312(1439)
342 KOG0247 Kinesin-like protein [ 50.8 4.9E+02 0.011 30.8 15.3 23 302-324 623-645 (809)
343 PF05278 PEARLI-4: Arabidopsis 50.8 3.1E+02 0.0067 28.5 15.4 60 165-224 202-261 (269)
344 TIGR00293 prefoldin, archaeal 50.8 1.7E+02 0.0038 25.6 10.3 36 175-210 4-39 (126)
345 KOG1962 B-cell receptor-associ 50.3 1.6E+02 0.0035 29.6 10.2 48 237-284 162-209 (216)
346 PRK09343 prefoldin subunit bet 50.0 1.9E+02 0.0042 25.9 13.3 76 138-213 24-114 (121)
347 PF12709 Kinetocho_Slk19: Cent 49.8 1.8E+02 0.0039 25.5 10.2 69 133-213 2-71 (87)
348 KOG4809 Rab6 GTPase-interactin 49.5 4.6E+02 0.0099 30.1 24.5 58 260-317 517-575 (654)
349 PF12777 MT: Microtubule-bindi 49.4 49 0.0011 34.4 6.9 106 232-343 212-318 (344)
350 COG1730 GIM5 Predicted prefold 49.2 2.3E+02 0.005 26.7 10.6 113 171-285 7-132 (145)
351 PF02183 HALZ: Homeobox associ 49.2 69 0.0015 24.5 5.9 41 245-285 3-43 (45)
352 PF09486 HrpB7: Bacterial type 49.2 2.5E+02 0.0053 26.9 15.2 84 217-306 55-139 (158)
353 PF01486 K-box: K-box region; 48.6 96 0.0021 26.6 7.5 23 254-276 75-97 (100)
354 PF02994 Transposase_22: L1 tr 48.3 43 0.00092 35.5 6.3 23 146-168 95-117 (370)
355 PRK10803 tol-pal system protei 48.3 92 0.002 31.4 8.4 41 237-277 58-98 (263)
356 PF07798 DUF1640: Protein of u 48.2 2.5E+02 0.0053 26.6 16.3 129 158-307 8-150 (177)
357 PF15450 DUF4631: Domain of un 47.6 4.7E+02 0.01 29.7 29.0 18 114-131 194-211 (531)
358 PF06548 Kinesin-related: Kine 47.3 4.5E+02 0.0098 29.4 20.4 86 95-188 101-186 (488)
359 PRK04325 hypothetical protein; 47.2 96 0.0021 25.8 7.0 27 254-280 9-35 (74)
360 PF05377 FlaC_arch: Flagella a 46.8 62 0.0014 26.0 5.5 34 252-285 5-38 (55)
361 TIGR02680 conserved hypothetic 46.4 6.9E+02 0.015 31.3 29.2 61 60-122 719-779 (1353)
362 PF10212 TTKRSYEDQ: Predicted 46.4 4.9E+02 0.011 29.5 18.8 19 110-128 306-324 (518)
363 PF04912 Dynamitin: Dynamitin 46.1 3.9E+02 0.0084 28.3 19.7 21 168-188 207-227 (388)
364 PF12777 MT: Microtubule-bindi 45.7 1.5E+02 0.0032 30.9 9.7 78 118-203 233-310 (344)
365 PF10805 DUF2730: Protein of u 45.6 1.6E+02 0.0035 25.8 8.6 37 251-287 39-77 (106)
366 TIGR03319 YmdA_YtgF conserved 45.3 4.8E+02 0.01 29.1 21.4 150 116-272 21-174 (514)
367 PF10211 Ax_dynein_light: Axon 45.3 2.9E+02 0.0064 26.7 15.3 17 233-249 169-186 (189)
368 PF03148 Tektin: Tektin family 45.0 4.1E+02 0.0089 28.3 20.7 18 89-106 205-222 (384)
369 PF13945 NST1: Salt tolerance 44.8 1.6E+02 0.0036 28.9 9.2 11 104-114 124-134 (190)
370 KOG0288 WD40 repeat protein Ti 44.5 4.8E+02 0.01 28.9 14.8 58 153-210 10-67 (459)
371 PF14073 Cep57_CLD: Centrosome 44.4 3.2E+02 0.0069 26.8 19.6 84 133-216 9-103 (178)
372 cd00632 Prefoldin_beta Prefold 44.4 2.1E+02 0.0045 24.7 11.1 33 175-207 68-100 (105)
373 PF14992 TMCO5: TMCO5 family 43.7 4E+02 0.0088 27.8 15.3 30 237-266 106-135 (280)
374 PRK00736 hypothetical protein; 43.6 90 0.0019 25.6 6.2 17 251-267 9-25 (68)
375 PRK00295 hypothetical protein; 43.6 1.1E+02 0.0024 25.1 6.7 25 243-267 15-39 (68)
376 PF08172 CASP_C: CASP C termin 43.5 2.4E+02 0.0051 28.7 10.4 37 293-329 98-134 (248)
377 PF09602 PhaP_Bmeg: Polyhydrox 42.9 3.2E+02 0.007 26.5 14.6 106 93-207 35-159 (165)
378 PF10212 TTKRSYEDQ: Predicted 42.9 5.5E+02 0.012 29.1 14.6 24 237-260 491-514 (518)
379 PRK01203 prefoldin subunit alp 42.7 2.8E+02 0.0061 25.8 10.2 39 174-212 4-42 (130)
380 PRK09841 cryptic autophosphory 42.5 5.9E+02 0.013 29.3 16.3 25 75-102 88-112 (726)
381 PF11544 Spc42p: Spindle pole 42.2 1.3E+02 0.0029 25.7 7.1 34 252-285 3-36 (76)
382 PF15254 CCDC14: Coiled-coil d 42.1 6.7E+02 0.015 29.9 18.7 33 178-210 428-460 (861)
383 PF08826 DMPK_coil: DMPK coile 41.9 1.9E+02 0.0042 23.6 8.4 28 136-163 33-60 (61)
384 PF08172 CASP_C: CASP C termin 41.5 3.4E+02 0.0074 27.5 11.2 42 172-213 88-129 (248)
385 KOG0247 Kinesin-like protein [ 41.3 6.8E+02 0.015 29.7 14.8 73 138-215 530-602 (809)
386 PF05266 DUF724: Protein of un 41.2 3.5E+02 0.0076 26.4 12.9 14 89-102 54-67 (190)
387 KOG2264 Exostosin EXT1L [Signa 41.1 1.5E+02 0.0032 34.2 9.1 71 242-318 81-151 (907)
388 PF14282 FlxA: FlxA-like prote 41.0 83 0.0018 27.7 6.0 21 241-261 20-40 (106)
389 PF04977 DivIC: Septum formati 40.8 74 0.0016 25.3 5.3 33 248-280 18-50 (80)
390 TIGR00414 serS seryl-tRNA synt 40.6 1.4E+02 0.0031 32.1 8.9 32 241-272 31-62 (418)
391 PF02994 Transposase_22: L1 tr 40.5 83 0.0018 33.4 7.0 48 238-285 142-189 (370)
392 PRK00736 hypothetical protein; 40.2 1.2E+02 0.0025 24.9 6.3 25 256-280 7-31 (68)
393 PF12795 MscS_porin: Mechanose 40.2 3.7E+02 0.0081 26.4 22.4 122 84-209 17-138 (240)
394 PF09731 Mitofilin: Mitochondr 40.2 5.5E+02 0.012 28.4 25.2 24 107-130 245-268 (582)
395 PF04102 SlyX: SlyX; InterPro 40.0 84 0.0018 25.6 5.5 37 243-279 14-50 (69)
396 PF09744 Jnk-SapK_ap_N: JNK_SA 39.8 3.4E+02 0.0074 25.8 17.5 28 297-324 126-153 (158)
397 PF05266 DUF724: Protein of un 39.8 3.7E+02 0.008 26.2 13.9 48 239-286 137-184 (190)
398 PF14988 DUF4515: Domain of un 39.4 3.9E+02 0.0083 26.4 24.2 14 175-188 83-96 (206)
399 TIGR03017 EpsF chain length de 39.2 4.9E+02 0.011 27.4 20.8 32 136-167 172-203 (444)
400 PF00170 bZIP_1: bZIP transcri 39.0 1.2E+02 0.0026 23.9 6.1 26 256-281 28-53 (64)
401 PF13514 AAA_27: AAA domain 38.9 7.9E+02 0.017 29.8 29.1 25 260-284 807-831 (1111)
402 TIGR03017 EpsF chain length de 38.7 4.9E+02 0.011 27.4 25.0 22 109-130 174-195 (444)
403 PF13094 CENP-Q: CENP-Q, a CEN 38.7 1.5E+02 0.0033 27.3 7.7 44 237-280 31-74 (160)
404 PF02841 GBP_C: Guanylate-bind 38.4 4.4E+02 0.0096 26.8 15.8 24 138-161 158-181 (297)
405 PRK00846 hypothetical protein; 38.3 1.6E+02 0.0035 25.1 7.0 41 240-280 20-60 (77)
406 PF05546 She9_MDM33: She9 / Md 38.2 3.1E+02 0.0068 27.5 10.1 98 158-258 34-131 (207)
407 TIGR02894 DNA_bind_RsfA transc 38.2 1.2E+02 0.0025 29.3 6.9 40 247-286 104-143 (161)
408 PRK11546 zraP zinc resistance 38.2 1.9E+02 0.0041 27.3 8.2 49 176-224 46-94 (143)
409 COG1382 GimC Prefoldin, chaper 38.2 3.2E+02 0.007 25.1 12.3 28 179-206 15-42 (119)
410 PRK01203 prefoldin subunit alp 38.0 3.4E+02 0.0073 25.3 10.2 37 294-330 86-122 (130)
411 PF10805 DUF2730: Protein of u 37.9 2.6E+02 0.0056 24.6 8.6 24 253-276 64-87 (106)
412 PF15450 DUF4631: Domain of un 37.6 6.6E+02 0.014 28.5 24.3 38 225-262 439-477 (531)
413 PF05529 Bap31: B-cell recepto 37.6 2.4E+02 0.0051 26.7 9.0 37 246-282 153-189 (192)
414 PF06103 DUF948: Bacterial pro 37.4 2.4E+02 0.0052 23.4 8.4 44 242-285 21-64 (90)
415 PF04728 LPP: Lipoprotein leuc 37.4 1.6E+02 0.0036 23.8 6.5 12 294-305 37-48 (56)
416 PF10498 IFT57: Intra-flagella 37.3 5.5E+02 0.012 27.5 14.8 134 120-256 223-358 (359)
417 KOG4460 Nuclear pore complex, 36.4 7.3E+02 0.016 28.7 22.0 80 84-163 525-616 (741)
418 PF04880 NUDE_C: NUDE protein, 36.4 43 0.00093 32.2 3.8 22 158-179 2-23 (166)
419 PF08232 Striatin: Striatin fa 36.3 2E+02 0.0043 26.4 7.9 59 248-312 5-63 (134)
420 PF03961 DUF342: Protein of un 36.2 2.5E+02 0.0054 30.3 9.9 32 177-208 375-406 (451)
421 PRK02119 hypothetical protein; 36.2 1.8E+02 0.0039 24.2 6.9 26 175-200 28-53 (73)
422 COG4487 Uncharacterized protei 36.1 6.4E+02 0.014 28.0 25.9 123 68-200 18-144 (438)
423 PRK11546 zraP zinc resistance 35.9 99 0.0022 29.2 6.0 62 221-282 49-110 (143)
424 PRK02793 phi X174 lysis protei 35.9 1.5E+02 0.0033 24.5 6.4 28 253-280 7-34 (72)
425 PF14073 Cep57_CLD: Centrosome 35.8 4.3E+02 0.0094 25.9 11.6 55 133-187 118-172 (178)
426 smart00338 BRLZ basic region l 35.7 1.3E+02 0.0028 23.7 5.9 27 257-283 29-55 (65)
427 PF05791 Bacillus_HBL: Bacillu 35.4 4E+02 0.0088 25.4 10.7 40 246-285 141-180 (184)
428 KOG4687 Uncharacterized coiled 35.4 5.7E+02 0.012 27.1 18.2 41 174-214 34-74 (389)
429 PF06810 Phage_GP20: Phage min 35.2 1.3E+02 0.0027 28.4 6.6 48 238-285 18-68 (155)
430 PF05600 DUF773: Protein of un 35.0 2E+02 0.0042 32.1 9.0 69 237-311 429-497 (507)
431 KOG1850 Myosin-like coiled-coi 34.9 6.1E+02 0.013 27.4 30.1 33 276-314 230-262 (391)
432 COG3206 GumC Uncharacterized p 34.8 6E+02 0.013 27.3 19.5 28 252-279 340-367 (458)
433 PF10779 XhlA: Haemolysin XhlA 34.6 2E+02 0.0043 23.4 6.9 21 296-316 35-55 (71)
434 PRK05431 seryl-tRNA synthetase 34.5 2.1E+02 0.0046 30.9 9.0 30 243-272 31-60 (425)
435 TIGR02894 DNA_bind_RsfA transc 34.5 4.4E+02 0.0095 25.5 10.4 8 118-125 59-66 (161)
436 PF08580 KAR9: Yeast cortical 34.4 8E+02 0.017 28.6 21.7 122 143-264 96-266 (683)
437 PRK14011 prefoldin subunit alp 34.2 4E+02 0.0086 25.0 10.5 43 243-285 84-126 (144)
438 PF13874 Nup54: Nucleoporin co 34.2 2.2E+02 0.0048 26.1 7.9 88 238-331 35-122 (141)
439 PRK00888 ftsB cell division pr 34.1 1.1E+02 0.0023 27.1 5.6 35 248-282 28-62 (105)
440 PF07851 TMPIT: TMPIT-like pro 33.7 2.9E+02 0.0063 29.4 9.6 51 237-287 8-58 (330)
441 PF07058 Myosin_HC-like: Myosi 33.6 3.1E+02 0.0068 29.3 9.6 75 244-318 4-82 (351)
442 PF12004 DUF3498: Domain of un 33.6 14 0.0003 40.9 0.0 56 176-231 375-434 (495)
443 PF05377 FlaC_arch: Flagella a 33.4 1.4E+02 0.0031 24.0 5.6 35 239-273 6-40 (55)
444 KOG4438 Centromere-associated 33.0 7.2E+02 0.016 27.6 28.0 81 175-260 228-313 (446)
445 PF14712 Snapin_Pallidin: Snap 32.9 2.9E+02 0.0062 23.0 9.9 77 87-163 9-92 (92)
446 PF10234 Cluap1: Clusterin-ass 32.9 5.8E+02 0.012 26.5 13.9 21 144-164 185-205 (267)
447 PF14992 TMCO5: TMCO5 family 32.8 4.7E+02 0.01 27.3 10.7 34 134-167 10-43 (280)
448 PF12711 Kinesin-relat_1: Kine 32.7 3.4E+02 0.0073 23.7 9.5 14 248-261 52-65 (86)
449 TIGR01010 BexC_CtrB_KpsE polys 32.6 5.8E+02 0.013 26.4 15.7 45 241-285 215-259 (362)
450 COG1842 PspA Phage shock prote 32.6 5.2E+02 0.011 25.9 23.0 55 109-164 27-81 (225)
451 KOG0982 Centrosomal protein Nu 32.5 7.5E+02 0.016 27.7 22.7 26 303-328 404-429 (502)
452 PF04949 Transcrip_act: Transc 32.4 4.7E+02 0.01 25.2 15.3 19 232-250 82-101 (159)
453 KOG3433 Protein involved in me 32.0 3E+02 0.0064 27.4 8.6 25 297-321 149-173 (203)
454 KOG2010 Double stranded RNA bi 32.0 3.5E+02 0.0076 29.2 9.7 79 124-203 123-201 (405)
455 cd00890 Prefoldin Prefoldin is 31.4 3.4E+02 0.0074 23.4 11.3 41 245-285 85-125 (129)
456 PF07989 Microtub_assoc: Micro 31.3 2.4E+02 0.0052 23.6 7.0 24 241-264 8-31 (75)
457 KOG1760 Molecular chaperone Pr 31.3 4.4E+02 0.0096 24.7 10.7 39 174-215 85-123 (131)
458 PRK04325 hypothetical protein; 30.9 1.9E+02 0.004 24.1 6.2 33 245-277 21-53 (74)
459 TIGR02209 ftsL_broad cell divi 30.2 1.4E+02 0.0031 24.3 5.5 34 247-280 24-57 (85)
460 PHA01750 hypothetical protein 30.1 1.6E+02 0.0034 24.9 5.5 38 225-262 33-71 (75)
461 PRK09343 prefoldin subunit bet 29.9 4.1E+02 0.0089 23.8 12.0 39 295-333 71-109 (121)
462 PF10368 YkyA: Putative cell-w 29.8 5.5E+02 0.012 25.2 18.3 64 217-280 124-190 (204)
463 PF15290 Syntaphilin: Golgi-lo 29.8 6.9E+02 0.015 26.4 12.4 11 59-69 47-57 (305)
464 KOG2264 Exostosin EXT1L [Signa 29.7 2.3E+02 0.0049 32.7 8.3 51 237-287 83-133 (907)
465 PLN02678 seryl-tRNA synthetase 29.5 2.6E+02 0.0056 30.8 8.7 11 451-461 255-265 (448)
466 PRK13729 conjugal transfer pil 29.5 1.6E+02 0.0035 32.8 7.1 33 176-208 82-114 (475)
467 COG4467 Regulator of replicati 29.4 1.8E+02 0.004 26.5 6.3 46 241-286 9-54 (114)
468 PHA02414 hypothetical protein 29.2 3.4E+02 0.0073 24.5 7.8 62 265-326 33-95 (111)
469 COG1256 FlgK Flagellar hook-as 29.1 8.9E+02 0.019 27.5 14.1 81 232-322 132-214 (552)
470 KOG4001 Axonemal dynein light 29.1 6.3E+02 0.014 25.7 10.7 25 255-279 229-253 (259)
471 PF11544 Spc42p: Spindle pole 28.9 2.6E+02 0.0056 24.0 6.7 53 265-323 2-54 (76)
472 PF01519 DUF16: Protein of unk 28.9 3.2E+02 0.0069 24.6 7.6 30 244-273 64-93 (102)
473 PF15290 Syntaphilin: Golgi-lo 28.8 7.2E+02 0.016 26.3 12.1 14 228-241 102-116 (305)
474 PRK11020 hypothetical protein; 28.6 2.9E+02 0.0062 25.5 7.4 58 112-172 4-61 (118)
475 PF10779 XhlA: Haemolysin XhlA 28.5 2.5E+02 0.0054 22.9 6.5 41 148-188 5-45 (71)
476 PF05384 DegS: Sensor protein 28.4 5.3E+02 0.012 24.6 20.2 41 89-129 3-43 (159)
477 PF11180 DUF2968: Protein of u 28.3 6E+02 0.013 25.3 11.0 73 138-210 108-180 (192)
478 PF14282 FlxA: FlxA-like prote 28.0 2.4E+02 0.0053 24.7 6.8 11 251-261 23-33 (106)
479 PF04871 Uso1_p115_C: Uso1 / p 27.8 4.9E+02 0.011 24.0 14.5 32 158-189 43-74 (136)
480 PRK13729 conjugal transfer pil 27.7 1.8E+02 0.0038 32.5 7.1 7 457-463 327-333 (475)
481 KOG3816 Cell differentiation r 27.7 67 0.0014 35.1 3.8 14 1-14 178-191 (526)
482 PF04065 Not3: Not1 N-terminal 27.7 6.6E+02 0.014 25.5 16.1 166 138-305 4-207 (233)
483 PF10482 CtIP_N: Tumour-suppre 27.7 4.9E+02 0.011 24.0 9.1 87 239-325 13-119 (120)
484 PF09766 FimP: Fms-interacting 27.4 7.6E+02 0.016 26.1 12.9 131 97-228 3-146 (355)
485 PF10224 DUF2205: Predicted co 27.4 2.9E+02 0.0063 23.7 6.9 51 260-316 15-65 (80)
486 KOG3859 Septins (P-loop GTPase 27.4 7.8E+02 0.017 26.5 11.3 93 56-155 309-404 (406)
487 PLN02372 violaxanthin de-epoxi 27.3 8.4E+02 0.018 27.1 11.8 83 173-273 364-447 (455)
488 PF12795 MscS_porin: Mechanose 27.2 6.1E+02 0.013 24.9 21.9 183 113-307 18-211 (240)
489 PF10224 DUF2205: Predicted co 27.1 2.8E+02 0.0061 23.8 6.7 49 232-280 13-63 (80)
490 KOG2077 JNK/SAPK-associated pr 27.0 9.6E+02 0.021 28.0 12.5 123 120-243 301-423 (832)
491 TIGR03319 YmdA_YtgF conserved 26.8 9.3E+02 0.02 26.9 23.1 162 108-276 20-185 (514)
492 KOG3990 Uncharacterized conser 26.8 2.8E+02 0.006 28.9 7.7 67 131-197 228-294 (305)
493 cd02426 Pol_gamma_b_Cterm C-te 26.6 15 0.00032 33.1 -1.0 14 442-455 76-89 (128)
494 KOG0998 Synaptic vesicle prote 26.5 1.9E+02 0.004 34.3 7.4 146 158-312 430-578 (847)
495 PF02050 FliJ: Flagellar FliJ 26.4 3.6E+02 0.0079 22.1 14.7 105 201-323 1-111 (123)
496 PF10205 KLRAQ: Predicted coil 26.0 4.9E+02 0.011 23.4 10.3 69 111-187 3-71 (102)
497 PF09602 PhaP_Bmeg: Polyhydrox 25.9 6.2E+02 0.013 24.6 16.0 130 122-254 24-165 (165)
498 PRK00846 hypothetical protein; 25.4 3.2E+02 0.007 23.3 6.8 53 251-309 10-62 (77)
499 PF05120 GvpG: Gas vesicle pro 25.4 43 0.00093 28.5 1.6 19 442-462 1-19 (79)
500 KOG4466 Component of histone d 25.0 8.3E+02 0.018 25.7 12.9 99 107-231 36-135 (291)
No 1
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=9.2e-20 Score=201.36 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH--
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-- 188 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~-- 188 (474)
-++.+.+|..++.++..+|..+..++ .|++.+.+..+++.+.+|++|++|++.+....|.+......+..|.++|..
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ek-eq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~ 341 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEK-EQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKK 341 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999 999999999999999999999999999999999999988888888888876
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--Hhhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011943 189 ------------WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMES-VSKETIAGLSVDITQLR 253 (474)
Q Consensus 189 ------------llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF--KaERDsWLkkEI-sLke~Issl~~~~~sLq 253 (474)
+..+|..+..+|..|+++...|++||| |.+|| +.|||.|+++|| .++.-|.........|+
T Consensus 342 ~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg----r~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq 417 (1200)
T KOG0964|consen 342 DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG----RYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQ 417 (1200)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc----cccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 889999999999999999999999999 99999 999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh-
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL- 332 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l- 332 (474)
.++..++..+....++++.|...|.+...++.++ ..++..++..++++.+.|+.||||+..|.-..--+---|
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~------~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~ 491 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRMEEF------DAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLS 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 889999999999999999999999998887555444333
Q ss_pred ---hhhhhhhcccccccCcccccc------ccCCCCCCCCCCCccccccccccccccccccCCCCc---cCCCCCCCccc
Q 011943 333 ---DRQSVAAGLSSAIGSDAVTAL------TSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGI---NGVHADPPPLV 400 (474)
Q Consensus 333 ---~~~~~~~~~ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~ 400 (474)
+...++-+-+-++|-++...| .+++.|+.+-- .+.+.---..++ .-+|+. |--+++.+..+
T Consensus 492 ~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~---~v~~~f~tavEv----taGNsLF~iVVdndevATkI 564 (1200)
T KOG0964|consen 492 RAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELI---KVPNKFKTAVEV----TAGNSLFNIVVDNDEVATKI 564 (1200)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhh---cCCHHHHhHHhh----hcccceEEEEecccHHHHHH
Confidence 223333444444555554444 23333333211 000000011111 122322 22233333322
Q ss_pred -cCCcccccCCceeeccCCccccchhhhhccccccccccCccCCCC
Q 011943 401 -LSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA 445 (474)
Q Consensus 401 -~~~~~~~~~~eiv~~~ld~~~~~~~~~q~~~~~~d~~~~vp~~da 445 (474)
.-|-.-. .|+|--+||+-.-.++++ |.+.+++.|+++-
T Consensus 565 l~~~n~m~-~GrVTF~PLNrl~~r~v~------yp~~sdaiPli~k 603 (1200)
T KOG0964|consen 565 LRKLNKMK-GGRVTFMPLNRLKARDVE------YPKDSDAIPLISK 603 (1200)
T ss_pred HHHHHhcc-CCeeEEeecccCchhhcc------CCCCCCccchHHH
Confidence 2344443 489999999988776544 3355777888764
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=2.8e-05 Score=88.44 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=17.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
..++..++.+++.+......++.+-..+..+.+.+
T Consensus 447 ~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l 481 (1164)
T TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444433
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.71 E-value=6.8e-06 Score=95.95 Aligned_cols=177 Identities=22% Similarity=0.266 Sum_probs=108.5
Q ss_pred HHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------
Q 011943 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK------- 222 (474)
Q Consensus 150 keA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERis------- 222 (474)
..+.++.+|..++........+...+.+++..++..+....+........+..+......+......++.+..
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~ 375 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5566666666666666666666666666666666666664444444322233333333333333333333333
Q ss_pred -Hh--Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011943 223 -LL--EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQK 298 (474)
Q Consensus 223 -QF--KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~ 298 (474)
.| ..++-.|+..++ .+...+..++.++.++......+...+..+..++..+..++..+..++..+ ..++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 449 (1163)
T COG1196 376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEEL------NEELE 449 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH------HHHHH
Confidence 22 233444555555 666666666666666666666666666666666677766666666666666 77888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 299 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 299 dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
.|..+++.+.+.+..+|++-..+.++.-.+.-.+
T Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (1163)
T COG1196 450 ELEEQLEELRDRLKELERELAELQEELQRLEKEL 483 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999777776555554433
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.57 E-value=0.00025 Score=83.25 Aligned_cols=117 Identities=26% Similarity=0.355 Sum_probs=74.0
Q ss_pred hHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhh
Q 011943 216 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN-------LLQENRQLKENVSSLRSQLSSDE 288 (474)
Q Consensus 216 ~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~s-------L~eEiq~LkeqIseL~~~iqtle 288 (474)
.++.++..+..++..|...-..+...+..+...+..+..++..+...+.. +..+...++..+..+...+..+
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~- 882 (1163)
T COG1196 804 EAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL- 882 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33446666677777776554455555555555555444444444444444 4444444444444444444444
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhh
Q 011943 289 SKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 338 (474)
Q Consensus 289 ~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~~~~~~ 338 (474)
..+..++..++..+.+.+..+-.+...+.++.+.|+.++......
T Consensus 883 -----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 927 (1163)
T COG1196 883 -----EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVE 927 (1163)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888899999999999988888888888887666555433
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.54 E-value=0.00023 Score=80.68 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=8.7
Q ss_pred CCceeeccCCccc
Q 011943 409 SGEIVQIPLDDKE 421 (474)
Q Consensus 409 ~~eiv~~~ld~~~ 421 (474)
.|-+.++|||...
T Consensus 570 ~g~~~~l~l~~i~ 582 (1179)
T TIGR02168 570 LGRVTFLPLDSIK 582 (1179)
T ss_pred CCcEEEeeccccc
Confidence 5666678877654
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.50 E-value=0.00045 Score=78.82 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011943 139 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191 (474)
Q Consensus 139 QLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llq 191 (474)
.++.+...+-.....++..+..++.......+....+..++..++.++..+..
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~ 343 (1164)
T TIGR02169 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555555544444333
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.47 E-value=0.0026 Score=69.67 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=59.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
.|...+...+..+..|..++..+++.+..--.+.+.|..++......-. + .......++.+|++.+--++.+++.|-+
T Consensus 361 ~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~-v-qlsE~~rel~Elks~lrv~qkEKEql~~ 438 (546)
T PF07888_consen 361 ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR-V-QLSENRRELQELKSSLRVAQKEKEQLQE 438 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555555555555542221111 0 0111256777899999999999999999
Q ss_pred HHHHHHhhhhhhhHhhhhh
Q 011943 317 ENIELVEKVNDLSVKLDRQ 335 (474)
Q Consensus 317 EnakL~ekvneL~~~l~~~ 335 (474)
|...|++-+-.|--.|+.-
T Consensus 439 EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 439 EKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999888887777654
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.36 E-value=0.002 Score=64.30 Aligned_cols=180 Identities=22% Similarity=0.271 Sum_probs=123.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLE------ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 181 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lle------EkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~Ikq 181 (474)
..+++..|..|+..|+.+......+.. ..+..++..+....+....++..|..|+...+........++.+|..
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 556788888888888777665322222 22345555555567778889999999999999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHH-HHHHHHH---------HHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhH
Q 011943 182 LQSEKEFW----LQKEAALEQKIS-QLRDESA---------ALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLS 246 (474)
Q Consensus 182 Lq~EI~~l----lqKEa~LeeeL~-~L~~e~~---------~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~ 246 (474)
|+.++..+ .++-..+..++. ....+.+ +|.-=..-.+..+.+++.+=+.|.+..+ .+........
T Consensus 129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence 99999983 233333333331 1111111 1111122234455666788899999999 8888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.....+..++..+...+..+..++..|+.....|..++..+
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 88888888888888888888888888888887777777755
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.14 E-value=0.0047 Score=61.71 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhHHHHHH
Q 011943 86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLE------ETIQQLQRQNDLRMQKEATLEETIK 159 (474)
Q Consensus 86 ~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lle------EkikQLe~E~~~~lQkeA~lE~kIk 159 (474)
.+.+++.+|+.|+...|.....-+-++-.+..|..++..++.+++.... ..|..|..+.+........++..|.
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 4778999999999999998888899999999999999999887776543 4455566777777778888888888
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHH
Q 011943 160 QLRNQNDLHIQREGGLEMNIANLQSEK 186 (474)
Q Consensus 160 dLq~~~~s~~QkEa~LEe~IkqLq~EI 186 (474)
.|+.+.....+ .++++|..|+..+
T Consensus 128 ~L~eEl~fl~~---~heeEi~~L~~~~ 151 (312)
T PF00038_consen 128 SLKEELEFLKQ---NHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTSTT-
T ss_pred HHHHHHHHHHh---hhhhhhhhhhhcc
Confidence 88887654322 2444555555444
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.0032 Score=71.17 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=45.6
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
.+...+..++.....+..++..++..+..+..++..+...+..+..++... ..++.++...++.+......++.
T Consensus 353 ~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~------~~~~~~~e~~l~~l~~~~~~l~~ 426 (880)
T PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA------PVDLGNAEDFLEELREERDELRE 426 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hhhhhhhHHHHHHHHHHHHHHHH
Confidence 444444444444444555555555555555555555555555555544433 23455666666666666666666
Q ss_pred HHHHHHhhhhhh
Q 011943 317 ENIELVEKVNDL 328 (474)
Q Consensus 317 EnakL~ekvneL 328 (474)
+-..+...+..+
T Consensus 427 ~~~~~~~~~~~~ 438 (880)
T PRK02224 427 REAELEATLRTA 438 (880)
T ss_pred HHHHHHHHHHHH
Confidence 655555444433
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.07 E-value=0.0092 Score=65.51 Aligned_cols=167 Identities=21% Similarity=0.285 Sum_probs=96.6
Q ss_pred HHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhh
Q 011943 95 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG 174 (474)
Q Consensus 95 ~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~ 174 (474)
.....|+.-..+.-..|++.+.+|+.++..+...|.....+- .+|.............+..+...| ....+.
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~-e~L~~~~kel~~~~e~l~~E~~~L-------~~q~~e 217 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEM-EQLKQQQKELTESSEELKEERESL-------KEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 344455555666667777777888888888777775544444 666666665555544444444444 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHhHh--hhhhhhhhhh-chHHHHhhhHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL----KLLEA--DKDSWTQMES-VSKETIAGLSV 247 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERi----sQFKa--ERDsWLkkEI-sLke~Issl~~ 247 (474)
+.++|.+|+.+|..+.++....+..+..+......+.+.++-|.+|+ .+++. .+..-++.|+ .|++.+..++.
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe 297 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE 297 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665555555555444444444443333333 33311 1122345566 77777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEESRNNLLQE 269 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eE 269 (474)
.+.+.+.++.-|.+++..+..-
T Consensus 298 ~lqaSqq~~~~L~~EL~~~~~~ 319 (546)
T PF07888_consen 298 QLQASQQEAELLRKELSDAVNV 319 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776655443
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.06 E-value=0.0091 Score=73.35 Aligned_cols=109 Identities=26% Similarity=0.293 Sum_probs=54.8
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
++.-++.+..+.+-.-.+...++..-+.++.++..++..++..-... ..++.+....-.++-.+++.|..+++.+....
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~-~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTL-QKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544445555555555555555555555544422222 45555555555555555555555555555555
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 170 QREGGLEMNIANLQSEKEFWLQKEAALEQK 199 (474)
Q Consensus 170 QkEa~LEe~IkqLq~EI~~llqKEa~Leee 199 (474)
.....+++.+.+|.+.+.....+-..+...
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~ 1014 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKA 1014 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555533333333333
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.00 E-value=0.0048 Score=69.52 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011943 81 LLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQ 160 (474)
Q Consensus 81 ~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkd 160 (474)
.-..++..-||-.||+|+.|.-.-.|-|.=|.-.|..|...-..++..|..+..+- ++|+.....+.+..-.-...|..
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~en-e~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQEN-EQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666788899999999888878777777776655554444444444433333 44444444333333333333333
Q ss_pred HHhhhhHHHHhhhhHHHHHHHHH
Q 011943 161 LRNQNDLHIQREGGLEMNIANLQ 183 (474)
Q Consensus 161 Lq~~~~s~~QkEa~LEe~IkqLq 183 (474)
|+.+......+++.+|.+|...+
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555444433
No 14
>PRK11637 AmiB activator; Provisional
Probab=97.92 E-value=0.011 Score=62.35 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ll 190 (474)
+++.+++++.+|..+..++ .+++.+.+...+.+..++..|..+........+.-..++.+|..++.+|..+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i--------~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSV--------RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444 33334444444444444444444444444444444444444555555554444
Q ss_pred HHHHHHHHHHH
Q 011943 191 QKEAALEQKIS 201 (474)
Q Consensus 191 qKEa~LeeeL~ 201 (474)
.+....+..|.
T Consensus 117 ~~l~~~~~~l~ 127 (428)
T PRK11637 117 QQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.89 E-value=0.026 Score=69.52 Aligned_cols=192 Identities=20% Similarity=0.196 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 011943 139 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLE 218 (474)
Q Consensus 139 QLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LE 218 (474)
..+..+.........+|..++++.+.......+...++.+...++.++..+......++..+.+++.++..+-.+--.|+
T Consensus 891 ~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~ 970 (1930)
T KOG0161|consen 891 EAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLE 970 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666667778888888888888888888888888888888877777777778888888888777777777777
Q ss_pred HHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhhh
Q 011943 219 ERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES-KKHATSE 296 (474)
Q Consensus 219 ERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~-~~~~~~E 296 (474)
+++..+.. +.+=|.+|- .+.+.+..+..++.....++..|.+....++..++.+...+..-+.....+|- +..+..+
T Consensus 971 ~e~~~~~e-~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~e 1049 (1930)
T KOG0161|consen 971 EEINSLDE-NISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGE 1049 (1930)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777432 222233333 44555555555555555555554444444444444444444433333333321 1222333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHh
Q 011943 297 QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVK 331 (474)
Q Consensus 297 ~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~ 331 (474)
...++..+..+...+..|-..-.+.-.....|..+
T Consensus 1050 l~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1050 LKDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333333
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.88 E-value=0.014 Score=62.48 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011943 139 QLQRQNDLRMQKEATLEETIKQLRNQ 164 (474)
Q Consensus 139 QLe~E~~~~lQkeA~lE~kIkdLq~~ 164 (474)
.++.+.+.+......++..+..|++.
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~ 242 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDE 242 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=97.85 E-value=0.021 Score=64.75 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=9.5
Q ss_pred ccCCCCCcCCC-chh
Q 011943 440 VPLTDAPLIGA-PFR 453 (474)
Q Consensus 440 vp~~dap~iga-pfr 453 (474)
+.|.|.|..|- |.|
T Consensus 814 ~~ilDEp~~~lD~~~ 828 (880)
T PRK02224 814 PLILDEPTVFLDSGH 828 (880)
T ss_pred ceEecCCcccCCHHH
Confidence 35778888776 454
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.85 E-value=0.015 Score=56.93 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=28.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.|...|......+.+|.............+...|..|..++.+...+....
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555666666666555555544
No 19
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.01 Score=68.53 Aligned_cols=128 Identities=22% Similarity=0.253 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhh-----------------HHHHHHHHHHHH
Q 011943 196 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGL-----------------SVDITQLRMQVV 257 (474)
Q Consensus 196 LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl-----------------~~~~~sLq~QV~ 257 (474)
|..+...|+.+...+.+--+.||.+...++-|++.++. |+ +......+. ..+...|..+++
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~-e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik 491 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE-ETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK 491 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666677777777777776543 33 444443333 233334555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 011943 258 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 330 (474)
Q Consensus 258 ~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~ 330 (474)
.|.++++.-..++..|...++.+..+++++ ......+..+.+.+....-.|=++|+.|-.++..||+
T Consensus 492 nlnk~L~~r~~elsrl~a~~~elkeQ~kt~------~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 492 NLNKSLNNRDLELSRLHALKNELKEQYKTC------DIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666655 4455555566666666666666666666666666665
No 20
>PRK11637 AmiB activator; Provisional
Probab=97.79 E-value=0.019 Score=60.62 Aligned_cols=14 Identities=0% Similarity=0.107 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 011943 115 VQQLQNECDLYKEK 128 (474)
Q Consensus 115 IkqLqeEi~~lkqk 128 (474)
|++++.++..+..+
T Consensus 56 i~~~~~~i~~~~~~ 69 (428)
T PRK11637 56 IAAKEKSVRQQQQQ 69 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.78 E-value=0.016 Score=69.17 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 011943 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATL---EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~l---E~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ll 190 (474)
++.+|+.++..+..+++.+..+- ..+..+...+-+.+..+ ...+...+.......+....|+.+|..|..++..+.
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~-e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~ 901 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKI-ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554432222 44455555555555555 222333333334455566677777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011943 191 QKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 191 qKEa~LeeeL~~L~~e~~~L 210 (474)
.....++.+|.-+..+...+
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~ 921 (1311)
T TIGR00606 902 REIKDAKEQDSPLETFLEKD 921 (1311)
T ss_pred HHHHHHHHHhhhhhHHHHHH
Confidence 65555555555554444433
No 22
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.76 E-value=0.031 Score=62.45 Aligned_cols=166 Identities=26% Similarity=0.373 Sum_probs=104.1
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
+.|+|++|+-|.|-. ..+|+.+...+.+++.- +.+.+..|..++...+..+-.+|-.|.+|++....-.
T Consensus 2 l~e~l~qlq~Erd~y----------a~~lk~e~a~~qqr~~q-mseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 2 LMESLKQLQAERDQY----------AQQLKEESAQWQQRMQQ-MSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 468899999998873 33455555555555443 3333377777778888888888888888886554322
Q ss_pred ---------HhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHh---Hhhhhhhhhh
Q 011943 170 ---------QREGGLEMNIANLQSEKEFWLQKEAALE---QKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQM 234 (474)
Q Consensus 170 ---------QkEa~LEe~IkqLq~EI~~llqKEa~Le---eeL~~L~~e~~~L~qKQ~~LEERisQF---KaERDsWLkk 234 (474)
..+..|..++.+|+.+++.|..+-...- +.|..|..+. ..+-..||+++..+ ..++..+|-
T Consensus 71 ~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~Eq---EerL~ELE~~le~~~e~~~D~~kLLe- 146 (617)
T PF15070_consen 71 PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQ---EERLAELEEELERLQEQQEDRQKLLE- 146 (617)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3334566777777777777654433332 2333332221 22223455566666 445555443
Q ss_pred hh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 235 ES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 270 (474)
Q Consensus 235 EI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEi 270 (474)
.+ +=+..+++.-..|..|..++.+|+..+-.|..++
T Consensus 147 ~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 147 QLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred hhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45 7777788888888889999998888777777666
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.055 Score=64.73 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 296 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 296 E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
....+...+..+...+..|....+.+...+..|.
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666655554444443
No 24
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.73 E-value=0.02 Score=62.92 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011943 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 168 (474)
Q Consensus 109 ~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~ 168 (474)
+-++..|..|.++++.++.+++-+.... ...+.+.++++.....+|.++.-++..+...
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~-~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKER-RGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 4466677777777777777766654444 4444555555554444444444444443333
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.71 E-value=0.018 Score=56.42 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=26.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 242 Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.......+..|..+++..+.+....+..+..|...|+.|...+...
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666655555555555544
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.70 E-value=0.016 Score=62.02 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 156 ~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
..+.+|+.+.+........++.++.+|+.++..+...-..+...|..+....
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~ 264 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAA 264 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3455555555555555566666666666666555444344444444444444
No 27
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.60 E-value=0.031 Score=57.45 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=102.1
Q ss_pred hhhhhhhh-------hhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011943 97 LRNERESH-------IQKEATLEGTVQQLQNECDLYKEKVQATLEET---IQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (474)
Q Consensus 97 l~~e~d~~-------~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEk---ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~ 166 (474)
|+-||-|. -|....||..|.-+.--+....+..+-....+ =.-++..++.|+.-.-.|-..+..|++.++
T Consensus 68 L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne 147 (305)
T PF14915_consen 68 LKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNE 147 (305)
T ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhH
Confidence 55566553 45555666666655555555444443333332 012345566677777777777777777777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 011943 167 LHIQREGGLEMNIANLQSEKEF---------------------WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (474)
Q Consensus 167 s~~QkEa~LEe~IkqLq~EI~~---------------------llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFK 225 (474)
...|+-...+-+++.|+.+..- ...+..+++.-...-+.+......|+.++|||+.|++
T Consensus 148 ~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlq 227 (305)
T PF14915_consen 148 ILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQ 227 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666555433 4455555666666667778888899999999999998
Q ss_pred hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011943 226 ADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (474)
Q Consensus 226 aERDsWLkkEI-sLke~Issl~~~~~sLq~QV 256 (474)
++ +.||.+.. ............+..++.+.
T Consensus 228 sE-N~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 228 SE-NMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 75 78888888 66666666665555555444
No 28
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.57 E-value=0.027 Score=62.84 Aligned_cols=162 Identities=22% Similarity=0.314 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH---
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF--- 188 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~--- 188 (474)
-+.|++|+.+-+.+-.. |+.+...|-++.+.|-..+..|+.+......+-..|+..|..|+..+..
T Consensus 3 ~e~l~qlq~Erd~ya~~-----------lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~ 71 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQ-----------LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP 71 (617)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 46778888887776655 6668888999999999999999999999999999999999999988876
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHhHhhhhhhhhhhhchHHHHhhhH---HHHHHHHHHH
Q 011943 189 ------WLQKEAALEQKISQLRDESAALNMKRAS---LEERLKLLEADKDSWTQMESVSKETIAGLS---VDITQLRMQV 256 (474)
Q Consensus 189 ------llqKEa~LeeeL~~L~~e~~~L~qKQ~~---LEERisQFKaERDsWLkkEIsLke~Issl~---~~~~sLq~QV 256 (474)
-...|..+..++..|..++..|..+-.. =.+.++.+..+.+.-|. .+.+.+..+. .+..+|..++
T Consensus 72 ~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~---ELE~~le~~~e~~~D~~kLLe~l 148 (617)
T PF15070_consen 72 PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLA---ELEEELERLQEQQEDRQKLLEQL 148 (617)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhh
Confidence 2233445555555565555544422111 12244444222222221 2222332222 3345666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 257 VELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 257 ~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
..=+..++-....|.+|+.++.+++..+-.+
T Consensus 149 qsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~l 179 (617)
T PF15070_consen 149 QSDKATASRALSQNRELKEQLAELQDAFVKL 179 (617)
T ss_pred cccchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6666777778889999999999999877766
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.57 E-value=0.057 Score=66.09 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH--
Q 011943 78 RQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLE-- 155 (474)
Q Consensus 78 ~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE-- 155 (474)
-=++|-|| +.|++--+--|+-|+.+.+|+=+++..+|..|+..++...-+-+.... -..+....+.+.+.+-
T Consensus 1154 iv~~LR~E-kei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~-----s~~e~~~i~~~v~~vNll 1227 (1822)
T KOG4674|consen 1154 IVSFLRKE-KEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAV-----SDDEHKEILEKVEEVNLL 1227 (1822)
T ss_pred HHHHHHhH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----hhhhhhHHHHHHHHHHHH
Confidence 34566666 578888888899999999999999999999999888876655322111 1123444555555444
Q ss_pred -HHHHHHHhhhhHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-Hh
Q 011943 156 -ETIKQLRNQNDLHIQREGGLEMNIAN-------LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EA 226 (474)
Q Consensus 156 -~kIkdLq~~~~s~~QkEa~LEe~Ikq-------Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF-Ka 226 (474)
+.=+-|+.++.....+-..+.+.|.. |+.++..+.-+......++..|+.+...|.+.-..|.+.+... .+
T Consensus 1228 ~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~ 1307 (1822)
T KOG4674|consen 1228 RESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKN 1307 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 33444555554444444444444333 4444444555555666666677777777777777666664444 33
Q ss_pred hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 011943 227 DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE----ESRNNLLQENRQLKENVS 278 (474)
Q Consensus 227 ERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LE----esl~sL~eEiq~LkeqIs 278 (474)
+...+ ..|| .|++.+......+..|.+....++ ..++.+..+++.+..++.
T Consensus 1308 ~~~kL-~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ 1363 (1822)
T KOG4674|consen 1308 DYEKL-KSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE 1363 (1822)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 3366 666666666655555555555544 333344444444444443
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.56 E-value=0.038 Score=62.47 Aligned_cols=92 Identities=26% Similarity=0.252 Sum_probs=59.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhh---------------hhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN-------VSSLRSQLSSDES---------------KKHAT 294 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lkeq-------IseL~~~iqtle~---------------~~~~~ 294 (474)
.++.....++.++..|+.+.+..++.+..++.++++|+.. ...|-..++.+.. +..|=
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6777888888888888888888888888888888777653 3345555554421 22222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 295 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 295 ~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
+-.-+.+.|+|.+...+..-=+|=.+|+-|+.+|
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555544444445556677776
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.49 E-value=0.03 Score=55.91 Aligned_cols=161 Identities=20% Similarity=0.331 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011943 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 193 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKE 193 (474)
.|+.|+.+++.+.+... -....++.++.+.+.+-+....++..+.+|++. +.+++.+|.....+.
T Consensus 11 ~iq~lD~e~~rl~~~~~-~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~q--------------v~~~e~ei~~~r~r~ 75 (239)
T COG1579 11 AIQKLDLEKDRLEPRIK-EIRKALKKAKAELEALNKALEALEIELEDLENQ--------------VSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 34556666666655533 344444555555555555555555555555444 555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 194 a~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
...+.++....+.+ .++.|..|-+ .+++.+.+++.++..|...+..++..+..+...+..+
T Consensus 76 ~~~e~kl~~v~~~~------------e~~aL~~E~~-------~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 76 KRAEEKLSAVKDER------------ELRALNIEIQ-------IAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHhccccHH------------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443333 3333332222 3444444444444444444444444444444444444
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 011943 274 KENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITE 317 (474)
Q Consensus 274 keqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrE 317 (474)
...+.+....+. .++..++.+..+....|..|..+
T Consensus 137 e~~~~e~~~~~e---------~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 137 EKNLAEAEARLE---------EEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443333222 23444444444444444444433
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.47 E-value=0.18 Score=62.06 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhh------hhhhhhhh-chHHHHhhhHHH---
Q 011943 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK------DSWTQMES-VSKETIAGLSVD--- 248 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaER------DsWLkkEI-sLke~Issl~~~--- 248 (474)
|..++.++..+..+-..+...+..++...+-+....++++-+...+..++ ..||..|. +..+.+..+..+
T Consensus 138 le~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~ 217 (1822)
T KOG4674|consen 138 LEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSI 217 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444445555555555555555555555555555555555553332 45777776 666665555555
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 249 -ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 249 -~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
+..|..++..++..+..+...++.|+.+...|...+.
T Consensus 218 ~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie 255 (1822)
T KOG4674|consen 218 EVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIE 255 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555444
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.46 E-value=0.094 Score=61.39 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-----------LEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~-----------LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
.++........++...++..+..+......+.+-+.. -..+++.+..+|.....+...+.++++....+
T Consensus 231 ~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k 310 (1074)
T KOG0250|consen 231 DLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGK 310 (1074)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555444433333322221 22333444444444555555555555555555
Q ss_pred HHHHHHhhhhHHHHHHHh
Q 011943 207 SAALNMKRASLEERLKLL 224 (474)
Q Consensus 207 ~~~L~qKQ~~LEERisQF 224 (474)
+....+|-...|.++..+
T Consensus 311 ~~~~r~k~teiea~i~~~ 328 (1074)
T KOG0250|consen 311 IEEARQKLTEIEAKIGEL 328 (1074)
T ss_pred HHHHhhhhhHHHHHHHHH
Confidence 555555444444455555
No 34
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.46 E-value=0.13 Score=52.93 Aligned_cols=54 Identities=17% Similarity=0.415 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh----Hhhhhhhhhhh
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADKDSWTQME 235 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF----KaERDsWLkkE 235 (474)
++..-+.|.---..|...+..|.+.+..|.++-..-|-+++.| -..||++--+-
T Consensus 121 fqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKt 178 (305)
T PF14915_consen 121 FQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKT 178 (305)
T ss_pred HHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444777777788888999999999999888888888887 45677764443
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=97.44 E-value=0.25 Score=55.96 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 011943 76 AERQHLL 82 (474)
Q Consensus 76 ~~~~~~~ 82 (474)
++|..+|
T Consensus 145 ~~r~~~~ 151 (880)
T PRK03918 145 ESREKVV 151 (880)
T ss_pred HHHHHHH
Confidence 3554444
No 36
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.35 E-value=0.24 Score=51.02 Aligned_cols=71 Identities=13% Similarity=0.278 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
..|..+.+.+..+.-.+-.+.+++.+...++...+..+.+++.+|+..-+.+..+-..+-..+..+....+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444445555555566666666666666666666666666655555555555555544444
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.35 E-value=0.32 Score=57.14 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 011943 91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128 (474)
Q Consensus 91 eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqk 128 (474)
.+++.+.++..+.+--.=.-+++.|..++..+..+.+.
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~ 257 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL 257 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444545544444444444455555555555544443
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.14 Score=60.54 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=16.2
Q ss_pred CCceeeccCCccccchhhhhccc
Q 011943 409 SGEIVQIPLDDKEVQDLELQVVE 431 (474)
Q Consensus 409 ~~eiv~~~ld~~~~~~~~~q~~~ 431 (474)
-|----|+||-+..|.-.++++-
T Consensus 666 LgraTFi~LDki~~~~~~l~~i~ 688 (1293)
T KOG0996|consen 666 LGRATFIILDKIKDHQKKLAPIT 688 (1293)
T ss_pred CCceeEEehHhhhhhhhccCCCC
Confidence 34455689999887777776644
No 39
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.34 E-value=0.2 Score=57.37 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHH
Q 011943 77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQAT----LEETIQQLQRQNDLRMQKEA 152 (474)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~l----leEkikQLe~E~~~~lQkeA 152 (474)
|..|+||-.| ++++|+.+.|+--|...-..-.-.|..++.|+.+++.+++..-.. -+.+ +=|..++..+...++
T Consensus 256 E~d~~lq~sa-k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqat-kylh~enmkltrqka 333 (1265)
T KOG0976|consen 256 EQDMDLQASA-KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQAT-KYLHLENMKLTRQKA 333 (1265)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHH
Confidence 7899999998 788999999988887766555666777888888888888774332 3344 556777788888888
Q ss_pred hHHHHHHHHHhhhhHHHHhh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 153 TLEETIKQLRNQNDLHIQRE--------------GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (474)
Q Consensus 153 ~lE~kIkdLq~~~~s~~QkE--------------a~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qK 213 (474)
.+.|.+++-+-+.++--.+. ..+.+.+..++.+..+++...+...++|+.+.+..-.|.+-
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 88777766554443333222 23444555666677778888888888888887777666554
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.19 Score=59.39 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSD-ESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 326 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl-e~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvn 326 (474)
++...+.++.-|...-.+....+..++..+.+. +..+....++.+++..+..+-.+.+..-.+-++++.+.-
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 333333444444444444444444444444433 223333444444444444444444444444444444333
No 41
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.27 E-value=0.12 Score=50.18 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=103.7
Q ss_pred HHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011943 91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 170 (474)
Q Consensus 91 eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Q 170 (474)
+--=++|..|+-..-+.=.++++.-.+|.++|..+...+..+ ..+++.--.++..+.+|+....+...
T Consensus 14 ~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~------------Qqal~~aK~l~eEledLk~~~~~lEE 81 (193)
T PF14662_consen 14 QLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL------------QQALQKAKALEEELEDLKTLAKSLEE 81 (193)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666667777777777777777776442 14566666778888888888777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHH
Q 011943 171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI 249 (474)
Q Consensus 171 kEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~ 249 (474)
....|..+-.+++.|+..+..+...|..+-..+..+.+ +|..|+.+|..+... |+..+ .-+.-+......+
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~-------~lk~~~~eL~~~~~~-Lq~Ql~~~e~l~~~~da~l 153 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD-------GLKKRSKELATEKAT-LQRQLCEFESLICQRDAIL 153 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-------hHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766666665555555544443 344455555332222 33333 3333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~i 284 (474)
..-..++..|...+..+..-++.|+-.++.|+.++
T Consensus 154 ~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 154 SERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555556655555555554
No 42
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.21 E-value=0.34 Score=49.80 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHH
Q 011943 171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI 249 (474)
Q Consensus 171 kEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~ 249 (474)
-...|++.+..|+.+...+.+..+.+..-+..+......|..+-..|+...... ..-=+.++ .++..|..+...+
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~----~~~D~~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI----ESCDQEELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhcCHHHHHHHHHHHHHHHHHH
Confidence 334455555556666555555555555555555555554444444333222222 22222444 5555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
...+.++..++..+..+...+..+..++..+..+|+.+
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554444433
No 43
>PRK09039 hypothetical protein; Validated
Probab=97.20 E-value=0.049 Score=56.62 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=66.1
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES- 236 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI- 236 (474)
|.+|-+-.....+....++..|..|+..+..+...-+.++..+..+... ...++.++.++..+-+. .+.+.
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~-------~~~~~~~~~~l~~~L~~-~k~~~s 133 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGA-------GAAAEGRAGELAQELDS-EKQVSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------cchHHHHHHHHHHHHHH-HHHHHH
Confidence 3445555555556666666666666666665555555544444422111 11223344444211111 12333
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.....|..++.++..|+.|+..++..+...+......+.+|..+..++...
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777777766666666665543
No 44
>PRK03918 chromosome segregation protein; Provisional
Probab=97.18 E-value=0.67 Score=52.58 Aligned_cols=29 Identities=7% Similarity=0.260 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQND 166 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~ 166 (474)
.+++.+.....+....++..+..++....
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~~~~ 224 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELREELE 224 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.17 E-value=0.09 Score=52.64 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=49.0
Q ss_pred hhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh----hhHHHHHHHHHH
Q 011943 235 ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQK----DFSTQIEAAGAL 310 (474)
Q Consensus 235 EIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~----dLksQiEal~d~ 310 (474)
-++....+..++.++..+..+...|+.++..+..++..|...+..+..++... ...+. .+...+..+-..
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~------e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL------EKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555544 33333 444445556666
Q ss_pred HHHHHHHHHHHHhhhhh
Q 011943 311 IDKLITENIELVEKVND 327 (474)
Q Consensus 311 RK~LwrEnakL~ekvne 327 (474)
+..+-.+-..|+++.+.
T Consensus 158 ~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 158 GQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHhcCH
Confidence 77788888999997765
No 46
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.17 E-value=0.23 Score=48.10 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011943 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 193 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKE 193 (474)
.|..|+.++..+..++ ..+..|+.-+=+--..-+--|..|.+.....-|--..+.+++..|+...-....++
T Consensus 13 ki~~L~n~l~elq~~l--------~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 13 KIKELQNELAELQRKL--------QELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777775 33444555444444445555566666655555666666666777777666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 011943 194 AALEQKISQLRDESAA 209 (474)
Q Consensus 194 a~LeeeL~~L~~e~~~ 209 (474)
..++.+|.....+.-.
T Consensus 85 r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 85 RELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677666666555543
No 47
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.14 E-value=0.29 Score=56.46 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kI---kdLq~~~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
++-.+..|+.++....+..+--.++- .||+.+..++.......|--. .+..++.-....+=..+.+.+.+|..+..
T Consensus 363 ~~~ql~~le~~~~e~q~~~qe~~~e~-eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~ 441 (980)
T KOG0980|consen 363 YENQLLALEGELQEQQREAQENREEQ-EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHA 441 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666555555555 666666666666666555544 66666666666666677777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (474)
Q Consensus 188 ~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~ 267 (474)
.++.|-...-.++.-.+.-.....-+.+-|...+.+++.+++.|..+=-+....+.+++.+..-|+.++..|+..+.++.
T Consensus 442 ~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~ 521 (980)
T KOG0980|consen 442 DLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLA 521 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 77777777776666655555555555566667777778888888888778888888888888888888888888877666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 011943 268 QENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITE 317 (474)
Q Consensus 268 eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrE 317 (474)
++-.....++..+..+-.. +.+.+..+.++..++|.++-+-
T Consensus 522 qs~~~~~~~l~~~l~~KD~---------~~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 522 QSHNNQLAQLEDLLKQKDR---------LAAELVAREEEREALRLEAERS 562 (980)
T ss_pred HHHHHHHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHhh
Confidence 6655555555544222221 2444555555455555544443
No 48
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.13 E-value=0.092 Score=59.65 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
.+..++.+++..|++++..|......+. ++..+-+ +.+.+-...|+..+|+..++||.|=.
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee~~--------rLk~iae-~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEEAA--------RLKEIAE-KQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555544444331 1121101 11233355677888888888887644
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.22 Score=57.08 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~ 166 (474)
+...|+.++-++..+++..+.+..+. ++|+.+..+.+-..+.++.....|+...+
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~-eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVEN-EELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677777777777777766666666 77777776666666666666666666655
No 50
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.04 E-value=0.96 Score=54.12 Aligned_cols=71 Identities=30% Similarity=0.444 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh---ch-HHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES---VS-KETIAGLSVDITQLRMQVVELEESRN 264 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI---sL-ke~Issl~~~~~sLq~QV~~LEesl~ 264 (474)
|...++.+..++..+...... .....++++ .+-+.|.+.|+ .. ...|..++..+..|..++...+....
T Consensus 723 ~~~~~~~~d~~i~~i~~~i~~---~~~~~~~~~----~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 723 WQELEAELDEQIEQIKQEIAA---AKQEAKEQL----KELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 555555555555555443332 223222333 34445555554 22 33666666666666666666665554
Q ss_pred HH
Q 011943 265 NL 266 (474)
Q Consensus 265 sL 266 (474)
..
T Consensus 796 ~V 797 (1201)
T PF12128_consen 796 EV 797 (1201)
T ss_pred HH
Confidence 33
No 51
>PRK01156 chromosome segregation protein; Provisional
Probab=97.04 E-value=0.96 Score=51.89 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 297 QKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 297 ~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
+.+++..++.+...+..|-.+=..|....++|
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el 442 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDEL 442 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544555444444
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.03 E-value=0.49 Score=55.01 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHH---------HHHHHHH-----HHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN---------LQSEKEF-----WLQKEAALEQKISQL 203 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~Ikq---------Lq~EI~~-----llqKEa~LeeeL~~L 203 (474)
+||+.=+..++++.|.++-.|.+-+-+-.-.......+...+.- |..|+.. +.+....+++++++|
T Consensus 265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777776655444333222222222222222 2222222 555566666677777
Q ss_pred HHHHHHHHH
Q 011943 204 RDESAALNM 212 (474)
Q Consensus 204 ~~e~~~L~q 212 (474)
+..+..|..
T Consensus 345 etdlEILKa 353 (1243)
T KOG0971|consen 345 ETDLEILKA 353 (1243)
T ss_pred HHHHHHHHH
Confidence 666666644
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.97 E-value=0.6 Score=54.31 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 115 IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
..++.+.|.+++.. +-+.+|+-.-|+.+...+--+.-.+|..+.=|+.
T Consensus 306 mad~ad~iEmaTld-KEmAEERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 306 MADTADAIEMATLD-KEMAEERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544 3444555455555555555555555554444443
No 54
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.94 E-value=0.54 Score=51.16 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh---hh----hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011943 77 ERQHLLQREAMAILEETVKHLRNERESH---IQ----KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ 149 (474)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~---~~----~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQ 149 (474)
|..+-| .|+|| |-|+|++|+..|--. || .-..||+.|+.|+..+..-.. ..+-|+.|+.-...++-
T Consensus 304 Eslqpl-eedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv-----fvDiinkLk~niEeLIe 376 (527)
T PF15066_consen 304 ESLQPL-EEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQV-----FVDIINKLKENIEELIE 376 (527)
T ss_pred hccCCc-HHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHH
Confidence 555666 46665 788999999877542 22 334566666666655432211 22223333333333332
Q ss_pred HHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhh
Q 011943 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (474)
Q Consensus 150 keA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERD 229 (474)
-.-.+=+.- ...+.++..|+.-..-..+.-.+-+.+=..|+-+.......=+.|+||+.-=-..||
T Consensus 377 dKY~viLEK--------------nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 377 DKYRVILEK--------------NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred hHhHhhhhh--------------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 222222222 223333333333333322222222222233333444445555677888877766788
Q ss_pred hhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhh
Q 011943 230 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN----LLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 230 sWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~s----L~eEiq~LkeqIseL~~~iqt 286 (474)
..+..=+.+...++.....+..|+.--.+|+....+ |..|-......+=+|+..++.
T Consensus 443 ksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 443 KSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887788888888888888888777777765532 222333333333355555553
No 55
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.88 E-value=1.3 Score=51.07 Aligned_cols=193 Identities=17% Similarity=0.188 Sum_probs=107.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q 011943 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 184 (474)
Q Consensus 105 ~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~ 184 (474)
.|.+.++...+-.|++.+..++..+-.+. -+...++.+...+--.++.++..+++-+.+.+....+--.+++.|.--..
T Consensus 84 tqetriyRrdv~llEddlk~~~sQiriLQ-n~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 84 TQETRIYRRDVNLLEDDLKHHESQIRILQ-NKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 56677777777777777777766654432 22355555555555555555555555555555555544445555544444
Q ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhH-----hhhhhh-------hhhhh-----
Q 011943 185 EKEF-----------WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE-----ADKDSW-------TQMES----- 236 (474)
Q Consensus 185 EI~~-----------llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFK-----aERDsW-------LkkEI----- 236 (474)
+|-+ +...+.++...+...-.++. -|++++.+|+ .++-++ +.++|
T Consensus 163 eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~-------~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~ 235 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKK-------ALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVM 235 (1265)
T ss_pred HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 33333333333333333332 2455666661 112122 11222
Q ss_pred ---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhhhhhhhHHHHH
Q 011943 237 ---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES-KKHATSEQKDFSTQIE 305 (474)
Q Consensus 237 ---sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~-~~~~~~E~~dLksQiE 305 (474)
+-+..+..++.+...+.+++..|+-+...+++.-.+++..-+.|...++..+. ++.+..+..+|++-+.
T Consensus 236 QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t 308 (1265)
T KOG0976|consen 236 QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRT 308 (1265)
T ss_pred HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455666777888888888888888888888887777777777775533 5566666666665543
No 56
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.78 Score=53.73 Aligned_cols=184 Identities=18% Similarity=0.219 Sum_probs=114.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Q 011943 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 184 (474)
Q Consensus 105 ~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~ 184 (474)
+++.+.|+-.|++|+++|..-.+.-...++.- ..+.+....--+....++=+-..|.+ .+..+-.+|..|+.
T Consensus 299 ~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l-~~~~~ki~e~~~EL~~I~Pky~~l~~-------ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 299 SKKKTKLELKIKDLQDQITGNEQQRNLALHVL-QKVKDKIEEKKDELSKIEPKYNSLVD-------EEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHh-------HHHHHHHHHHHHHH
Confidence 55667777778888888777777743333322 44444444443333333333333333 34445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHH
Q 011943 185 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE 260 (474)
Q Consensus 185 EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF---KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LE 260 (474)
....++.+-....+ +. ..++++-|..++- +++.+. ..++...+++|+ +++..+......+..|...+.+.+
T Consensus 371 ~~~~l~~Kqgr~sq-Fs-sk~eRDkwir~ei---~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~ 445 (1200)
T KOG0964|consen 371 KQRDLLAKQGRYSQ-FS-SKEERDKWIRSEI---EKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETK 445 (1200)
T ss_pred HHHHHHHhhccccc-cC-cHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 55554444332211 11 1234444544443 334433 556777888999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHH
Q 011943 261 ESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAA 307 (474)
Q Consensus 261 esl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal 307 (474)
.+.+.+..++-.++...+++....+.+ -.+-..|++.++.+
T Consensus 446 ~r~~~~~~~~~~~k~~~del~~~Rk~l------WREE~~l~~~i~~~ 486 (1200)
T KOG0964|consen 446 GRMEEFDAENTELKRELDELQDKRKEL------WREEKKLRSLIANL 486 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 999999999999999999999888877 55566666655443
No 57
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.48 Score=52.58 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH---
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF--- 188 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~--- 188 (474)
+..+..|+.+|.-++++++....++|+-.+-=.. .+...-.++....+|+..-++..+--..+.+.+.++++-...
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~-lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~ 85 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLE-LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR 85 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666666666666555555433222111 122222233333333333333333333444444444433222
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchH-------HHHhhhHHHH
Q 011943 189 ------------WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK-------ETIAGLSVDI 249 (474)
Q Consensus 189 ------------llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLk-------e~Issl~~~~ 249 (474)
--.+|..+-.+|-.|+++.. |+.. .+..-++|++.+.+.=-.++ ..-..++.++
T Consensus 86 ~g~e~EesLLqESaakE~~yl~kI~eleneLK---q~r~----el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~el 158 (772)
T KOG0999|consen 86 DGEEREESLLQESAAKEEYYLQKILELENELK---QLRQ----ELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDEL 158 (772)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 22344444445555544432 1122 23333555555543322333 3334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----hhhhhhhhhhhHHHHHHHHHHHHH
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES----KKHATSEQKDFSTQIEAAGALIDK 313 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~----~~~~~~E~~dLksQiEal~d~RK~ 313 (474)
..+.--.+.|=.+.+.|+++|=.|+.+++.|....=.+|. .+.+.+++.-|++|++++.-+++-
T Consensus 159 Ke~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~I 226 (772)
T KOG0999|consen 159 KEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEI 226 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566667788888888888888877654433332 344566777788888887777653
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.85 E-value=0.21 Score=55.23 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=89.8
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhh
Q 011943 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (474)
Q Consensus 148 lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaE 227 (474)
-.-.+.+|..|..++...+......++++..|..|+.+++.+.++-....+...-.......+...-+.|+..+..|++.
T Consensus 84 s~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr 163 (546)
T KOG0977|consen 84 SGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRR 163 (546)
T ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 34456778888888888888888888888888888888888666655554444444444333333333333366666554
Q ss_pred hhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh-------------h----h
Q 011943 228 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS-SD-------------E----S 289 (474)
Q Consensus 228 RDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq-tl-------------e----~ 289 (474)
+..+--....|+.....+...+..+..++..----...+...+|.|++.|.-+..... .+ + =
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F 243 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYF 243 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHH
Confidence 4443222224444444444444433332222222223344455555555553332222 00 0 0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 011943 290 KKHATSEQKDFSTQIEAAGALIDK 313 (474)
Q Consensus 290 ~~~~~~E~~dLksQiEal~d~RK~ 313 (474)
...|+.-+.+++.++++-...-+.
T Consensus 244 ~~eL~~Ai~eiRaqye~~~~~nR~ 267 (546)
T KOG0977|consen 244 KNELALAIREIRAQYEAISRQNRK 267 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334456677777777776665554
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.84 E-value=0.77 Score=51.39 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhHHHHhhhh-----------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011943 156 ETIKQLRNQNDLHIQREGG-----------LEMNIANLQSEKEF-------WLQKEAALEQKISQLRDESAALNMKRASL 217 (474)
Q Consensus 156 ~kIkdLq~~~~s~~QkEa~-----------LEe~IkqLq~EI~~-------llqKEa~LeeeL~~L~~e~~~L~qKQ~~L 217 (474)
.-|++|+.-.++..++... |.+++..|+..... .+++-..++.+++.+..+.......-..|
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL 473 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQL 473 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555444444 44444444443332 44444455555555554443332222222
Q ss_pred HHHHHHh--HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 218 EERLKLL--EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 271 (474)
Q Consensus 218 EERisQF--KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq 271 (474)
...+..+ ..-|-.++++=..+-..|.-++.+|.....+...|+.+++.+.....
T Consensus 474 ~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 474 VKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333 22334444433344444555555555555555555555555544433
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.83 E-value=1.2 Score=53.42 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=47.6
Q ss_pred HHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh-HHHHhh
Q 011943 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND-LHIQRE 172 (474)
Q Consensus 94 i~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~-s~~QkE 172 (474)
+..+......+.-...-+|+.+++....+..+...+.....+. ++.+.+...+......++.++......-. ....+-
T Consensus 609 l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 687 (1201)
T PF12128_consen 609 LEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL-KQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQL 687 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334456666666666666666544333333 55555555555555555555555444332 223333
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQ 191 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llq 191 (474)
..++..+++++.++..|+.
T Consensus 688 ~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 688 NELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
No 61
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.78 E-value=0.58 Score=45.42 Aligned_cols=142 Identities=19% Similarity=0.269 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011943 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqK 192 (474)
..|+.|.+++...+.. +....-.+..+..++..+..-.+.++..+..|+.. +..+...+.++.
T Consensus 27 ~lIksLKeei~emkk~-e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~--------------L~~y~kdK~~L~-- 89 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKK-EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ--------------LKNYEKDKQSLQ-- 89 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH--
Confidence 4577777777777776 33344444555555655555555555555555544 444444444421
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 193 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 271 (474)
Q Consensus 193 Ea~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq 271 (474)
.++.++..++.+...|......|+.|+.+++.|||.|..+-. .+.+.-.--...+.-|...+..|.+.+.....+..
T Consensus 90 --~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 90 --NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333333333334567788888888888887766 66666666666666677777766666665555555
Q ss_pred HH
Q 011943 272 QL 273 (474)
Q Consensus 272 ~L 273 (474)
+.
T Consensus 168 ev 169 (201)
T PF13851_consen 168 EV 169 (201)
T ss_pred HH
Confidence 44
No 62
>PRK09039 hypothetical protein; Validated
Probab=96.77 E-value=0.18 Score=52.53 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 011943 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~l 189 (474)
.|..+|..++.+++.+..++. +|-.-...-...-+.++..|.+|+.........++.++..+..........
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa--------~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~ 114 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIA--------ELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchH
Confidence 455555556666666555542 233333334445566666677777666655555555555444222212222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (474)
Q Consensus 190 lqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~e 268 (474)
..+.+.+..+|......-..-+. .=.+|+.|| .|+..+..++..+..+..+....+..+..+..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~---------------~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALA---------------QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333222211111 122344555 55555555555555555555555555555544
Q ss_pred HHHHHH
Q 011943 269 ENRQLK 274 (474)
Q Consensus 269 Eiq~Lk 274 (474)
.++...
T Consensus 180 ~L~~a~ 185 (343)
T PRK09039 180 RLNVAL 185 (343)
T ss_pred HHHHHH
Confidence 444443
No 63
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.74 E-value=0.00036 Score=77.95 Aligned_cols=176 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHhHh
Q 011943 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE---QKISQLRDESAALNMKRASLEERLKLLEA 226 (474)
Q Consensus 150 keA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Le---eeL~~L~~e~~~L~qKQ~~LEERisQFKa 226 (474)
..+.+.-.+..|+++..-.......+..++..++.++..+.++-..+. .+...|.++.+.|..+-. |+.++.+
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~----r~~klE~ 315 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKAD----RADKLEN 315 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHH
Confidence 344455555555555544333334344444444444444333332222 455666666666655544 3333321
Q ss_pred hhhhh--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhh-hhhhhhhhhhhh
Q 011943 227 DKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNN---LLQENRQLKENVSSLRSQLSSD-ESKKHATSEQKD 299 (474)
Q Consensus 227 ERDsW--LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~s---L~eEiq~LkeqIseL~~~iqtl-e~~~~~~~E~~d 299 (474)
+=..+ =-.++ .++..+..++..|..+......|++.+.. +..++..++.+|..+...+... .....+..++..
T Consensus 316 ~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~ 395 (713)
T PF05622_consen 316 EVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQ 395 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 01344 66777777777777777777776666543 4444455555555555554432 112334566777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 300 FSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 300 LksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
|..++.++...++.|..+-..|.+.+.+|.
T Consensus 396 L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 396 LEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888888888888888788888777774
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.74 E-value=0.26 Score=45.47 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
..|..+.+.+.-+...++.++++|...+..
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~ 32 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQ 32 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777766655433
No 65
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.72 E-value=0.54 Score=45.59 Aligned_cols=105 Identities=23% Similarity=0.280 Sum_probs=70.5
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHh
Q 011943 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 171 (474)
Q Consensus 92 eti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Qk 171 (474)
+.|+.|+++..-.-.++.-.++.+..+..++..+..-|+.+..+. ..|+.+...+-+-...+..
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~-~eL~k~L~~y~kdK~~L~~--------------- 90 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEV-EELRKQLKNYEKDKQSLQN--------------- 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------------
Confidence 579999999999999999999999999999999999987766666 6666665555554443322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 172 Ea~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
+..++..++.++..+...-..++.++.+++.+++.|+.+-.
T Consensus 91 ---~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 91 ---LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444444444444445555555555566655555444
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.72 E-value=1 Score=53.70 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011943 195 ALEQKISQLRDESAALNMK 213 (474)
Q Consensus 195 ~LeeeL~~L~~e~~~L~qK 213 (474)
.++..+..++.....|...
T Consensus 585 ~~~d~l~~le~~k~~ls~~ 603 (1317)
T KOG0612|consen 585 DLEDKLSLLEESKSKLSKE 603 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444333
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.66 E-value=1.9 Score=49.83 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLEE 135 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lleE 135 (474)
=.-+|+.|+.|+.+|..+...+.....+
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~ 267 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEAD 267 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3567888888888888887766544443
No 68
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.60 E-value=1.1 Score=46.17 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhH
Q 011943 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFK 225 (474)
+..|+.....+.+-.+.|...+..+..-...+..+...|+.++.+++
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555554
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.55 E-value=0.33 Score=50.31 Aligned_cols=177 Identities=17% Similarity=0.215 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHhhhhH-----------HHHhhhhHHHHHHHH
Q 011943 117 QLQNECDLYKEKVQATLEETIQQLQRQ---NDLRMQKEATLEETIKQLRNQNDL-----------HIQREGGLEMNIANL 182 (474)
Q Consensus 117 qLqeEi~~lkqkLE~lleEkikQLe~E---~~~~lQkeA~lE~kIkdLq~~~~s-----------~~QkEa~LEe~IkqL 182 (474)
.|...+..+...|.. ..+.|.||+.+ +++++|..+........-.+.... +.-.-.-|..+++.|
T Consensus 94 ~L~~~~~~le~~L~~-~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~L 172 (306)
T PF04849_consen 94 DLSERNEALEEQLGA-ALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSL 172 (306)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHH
Confidence 344444444444433 22333555544 456666666555433222222110 111123477778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhh--hhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHH
Q 011943 183 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD--KDSWTQMES-VSKETIAGLSVDITQLRMQVVEL 259 (474)
Q Consensus 183 q~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaE--RDsWLkkEI-sLke~Issl~~~~~sLq~QV~~L 259 (474)
+.|+..+..+-+.|...-...+.+-..|..-- +.||-.. .=.-|..|+ .-.+....+..++.+|..+|..+
T Consensus 173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc------v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivdl 246 (306)
T PF04849_consen 173 EEENEQLRSEASQLKTETDTYEEKEQQLVLDC------VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDL 246 (306)
T ss_pred HHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH------HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777766666655554443222 2445221 223355666 55566677777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHH
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEA 306 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEa 306 (474)
+..+..+..++..|...+.........+ ..++.+|+.++.+
T Consensus 247 Q~r~k~~~~EnEeL~q~L~~ske~Q~~L------~aEL~elqdkY~E 287 (306)
T PF04849_consen 247 QQRCKQLAAENEELQQHLQASKESQRQL------QAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 8888888888888777777665555555 5566666666544
No 70
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.84 Score=52.58 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=87.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI 186 (474)
++-+.++...+|+.-+..++-- |+.++.+...+-|..-.|++..++|+++.......-..+.++..-|+.+.
T Consensus 644 ~~~~~~k~~e~l~~~~~kyK~l--------I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 644 QTQLAEKYHEELDDIQQKYKGL--------IRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666555444 46677777777777777777777777665555555555555555555444
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHH
Q 011943 187 E----------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQV 256 (474)
Q Consensus 187 ~----------~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV 256 (474)
. +....-....+++..+..+...|..++..|.+.++.-.+.+.+|=..--+-... ..--..+.+.++||
T Consensus 716 g~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~-~~~~~~~~~~qeqv 794 (970)
T KOG0946|consen 716 GIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELS-QGSLNDNLGDQEQV 794 (970)
T ss_pred cccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc-cchhhhhhhhHHHH
Confidence 3 122222234455666666666666666655555544433333332111100000 11112223445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 257 VELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 257 ~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
.++...+......++++..++..++.++++
T Consensus 795 ~El~~~l~e~~~~l~~~q~e~~~~keq~~t 824 (970)
T KOG0946|consen 795 IELLKNLSEESTRLQELQSELTQLKEQIQT 824 (970)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555444555555555555555555555443
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.49 E-value=3.5 Score=50.80 Aligned_cols=137 Identities=7% Similarity=0.088 Sum_probs=72.2
Q ss_pred HHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhh
Q 011943 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (474)
Q Consensus 150 keA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERD 229 (474)
....+...+.+|........+.-..+.+++..++.++..+..+...++.++..+....+.+-++...++..+..+... .
T Consensus 349 ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~-~ 427 (1486)
T PRK04863 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA-K 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 333444444444444444444444444444444444444444444444444444444444444434334444444222 2
Q ss_pred hhhh-hhh---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 230 SWTQ-MES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 230 sWLk-kEI---sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.|.. -.. .|...+.........++.++..++..++.+....+.+......+......+
T Consensus 428 ~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv 489 (1486)
T PRK04863 428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV 489 (1486)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2332 111 466777777777777777777777777777777777777777665555543
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.46 E-value=1.9 Score=47.60 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=69.6
Q ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHh-Hhhhhhh--hhh
Q 011943 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER-LKLL-EADKDSW--TQM 234 (474)
Q Consensus 159 kdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEER-isQF-KaERDsW--Lkk 234 (474)
..++........+...++.....++..+..+.+.|...+.+|..+......+...-. .+ +.-+ ..=.+.+ +..
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~---k~~lpgip~~y~~~~~~~~~ 455 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE---KSNLPGLPEDYLEMFFEVSD 455 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCcHHHHHHHHHHHH
Confidence 333344444444444444444444444444555555555555555444432211000 00 0000 0001111 356
Q ss_pred hh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 235 ES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 235 EI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
+| .|...+..-..+...+..++.....++..|..+...|......++..|+-
T Consensus 456 ~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 456 EIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77778877777777888888888888888888888888888888777774
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.44 E-value=1 Score=44.02 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~ 267 (474)
+++....+++++..|..... +|||...+|.+ ...-+-+|. +|-..|..++..+..+..+...++.....|.
T Consensus 58 al~~aK~l~eEledLk~~~~-------~lEE~~~~L~a-q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 58 ALQKAKALEEELEDLKTLAK-------SLEEENRSLLA-QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 45555555555555544443 34444444421 122344667 7888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 268 QENRQLKENVSSLRSQLSSDES-KKHATSEQKDFSTQIEAAGALIDKLITENIELVEKV 325 (474)
Q Consensus 268 eEiq~LkeqIseL~~~iqtle~-~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekv 325 (474)
.++..|+.+|-.+..-+..-+. ...-...+.+|...+++.......|..+=..|-+.+
T Consensus 130 ~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 130 TEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888544443331100 000022355566666666666666666655555543
No 74
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.40 E-value=0.26 Score=44.46 Aligned_cols=121 Identities=17% Similarity=0.268 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--Hhhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011943 177 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMES-VSKETIAGLSVDITQLR 253 (474)
Q Consensus 177 e~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF--KaERDsWLkkEI-sLke~Issl~~~~~sLq 253 (474)
.++..|+.++..+......+..++..+.........--...+.++.+= ++..+. +++ .++..+..++..+..|+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~---~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDI---KELQQLREELQELQQEINELK 79 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544333222222232221 222221 333 44444444444444444
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHH
Q 011943 254 MQVVELEES----RNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEA 306 (474)
Q Consensus 254 ~QV~~LEes----l~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEa 306 (474)
.++...... ..+|..+-..|...+..+..++..+ ...+.-|-.|++.
T Consensus 80 ~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL------~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 80 AEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL------NEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhh
Confidence 444333322 2345555555555555665555555 4455555555543
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.39 E-value=4 Score=50.33 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhHh------hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011943 88 AILEETVKHLRNERESHIQKEA------TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQL 161 (474)
Q Consensus 88 ~~~eeti~~l~~e~d~~~~~e~------~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdL 161 (474)
+-++..+++|+.+...-.+.-. .....+..+...+..+...++. ..+++.+++.+...+-.....++..+..+
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee-~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEE-QNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555554322111 1234555556666666666544 33334666667777777777777777777
Q ss_pred HhhhhHHHHhhhhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 162 RNQNDLHIQREGGLEMNIANLQSEKEF-----------------WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 162 q~~~~s~~QkEa~LEe~IkqLq~EI~~-----------------llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
+.......+....++.++.+++..+.. |...-..+..++.+++.+...+.++-..++..+++|
T Consensus 396 qeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 396 KSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666666666666666666654 334444445555555555555555555555555555
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.33 E-value=2.3 Score=46.97 Aligned_cols=246 Identities=15% Similarity=0.220 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHH-------
Q 011943 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA----------TLEETIQQLQRQNDLRMQ------- 149 (474)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~----------lleEkikQLe~E~~~~lQ------- 149 (474)
++-.++.|+.+..+.+-....|.--...|.+|.+.-..+++.+-+ .++..|..++.++..+..
T Consensus 114 l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~ 193 (569)
T PRK04778 114 LDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDY 193 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 445555666666666666666666666666666666666655422 233444444444433221
Q ss_pred -----HHHhHHHHHHHHHhhhhHH----HHhhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q 011943 150 -----KEATLEETIKQLRNQNDLH----IQREGGLEMNIANLQSEKEF------------WLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 150 -----keA~lE~kIkdLq~~~~s~----~QkEa~LEe~IkqLq~EI~~------------llqKEa~LeeeL~~L~~e~~ 208 (474)
-...++..+..|+....-- ..-...+=++|..|+..+.. .-.+-..++.+|.....-..
T Consensus 194 ~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~ 273 (569)
T PRK04778 194 VEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLE 273 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222222111 11111123334444444444 33344444444444332222
Q ss_pred H-----HHHhhhhHHHHHHHh----Hhhhhhh--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHH----------HHHH
Q 011943 209 A-----LNMKRASLEERLKLL----EADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEES----------RNNL 266 (474)
Q Consensus 209 ~-----L~qKQ~~LEERisQF----KaERDsW--LkkEI-sLke~Issl~~~~~sLq~QV~~LEes----------l~sL 266 (474)
. ...+-..++++|.+| ..|..+- +.+.. .+...+......+..|..++..+..+ ...+
T Consensus 274 ~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~l 353 (569)
T PRK04778 274 ELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQL 353 (569)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHH
Confidence 2 223444566666666 2222221 33444 67777777777777888887777777 5556
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 267 LQENRQLKENVSSLRSQLSSD--------ESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 267 ~eEiq~LkeqIseL~~~iqtl--------e~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
..++..+...+..+...+... +.-..+......+..+...+......|...+....+++..+.-+|
T Consensus 354 ekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 354 EKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555554444422 001111233333333344444444444444544444555554333
No 77
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=2.8 Score=47.88 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHH---HHHHHHHHHHHHHH
Q 011943 117 QLQNECDLYKEKVQATLEETIQQLQ-RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMN---IANLQSEKEFWLQK 192 (474)
Q Consensus 117 qLqeEi~~lkqkLE~lleEkikQLe-~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~---IkqLq~EI~~llqK 192 (474)
.+..|...+.+.+.++..+.+..+. -..+++.++....+..+..|+.....+.--.+.++.. ...+|..|..+.++
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~e 476 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQE 476 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777766666 5677778877777777777777776666222222211 11122223222222
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011943 193 EAALEQ-------KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN 264 (474)
Q Consensus 193 Ea~Lee-------eL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~ 264 (474)
-..-.. +......+...|..+-..|++.+.++++- +..++..| .|.+....+......+..+.+.+...+.
T Consensus 477 l~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~-~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le 555 (698)
T KOG0978|consen 477 LREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS-VDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLE 555 (698)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Confidence 111111 11112222222333333344444444222 22233333 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 011943 265 NLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 333 (474)
Q Consensus 265 sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~ 333 (474)
.....+..+...+..|+..+... .....++..++.++....+.+....-.|-|+...|-++|-
T Consensus 556 ~~kk~~~e~~~~~~~Lq~~~ek~------~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 556 MLKKKAQEAKQSLEDLQIELEKS------EAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544 3444555555555555555555555555566666665653
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=3 Score=48.22 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~e 268 (474)
-+-....+..+|.+++..+..|......|..++.+-+...--=..+-..|+.........+..|..++-.|..+..+-..
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ 563 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN 563 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666655532111000111134444444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHhhh
Q 011943 269 ENRQLKENVSSLRSQL 284 (474)
Q Consensus 269 Eiq~LkeqIseL~~~i 284 (474)
++..+..++++|...+
T Consensus 564 eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDV 579 (1118)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 5555555555554333
No 79
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.25 E-value=2.7 Score=47.22 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=24.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 290 KKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 290 ~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
...+..+++.+..+++.-.+..+.++-.+|+=-+-+-..|
T Consensus 514 Tr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaY 553 (594)
T PF05667_consen 514 TRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAY 553 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHH
Confidence 3344667777777777777777777777766333333333
No 80
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.24 E-value=3 Score=47.48 Aligned_cols=222 Identities=18% Similarity=0.147 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH-
Q 011943 113 GTVQQLQNECDLYKEKVQATLEETIQQL---QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF- 188 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkLE~lleEkikQL---e~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~- 188 (474)
.+.+.|+..+......+-.+..++-.++ ..-...+...++.++.+|-.|++-.....|+-..++++|+.|-.+...
T Consensus 310 ~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkk 389 (786)
T PF05483_consen 310 STQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKK 389 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445566666666665555555553343 444556777899999999999999999999999999999887776655
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhh------hhhhh-chHHHHhhhHHHHHH
Q 011943 189 ----------WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW------TQMES-VSKETIAGLSVDITQ 251 (474)
Q Consensus 189 ----------llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsW------LkkEI-sLke~Issl~~~~~s 251 (474)
-..++-+++. |.....+.+.|+-....++.=...|+.--..+ ..+++ .|+..+.+.......
T Consensus 390 s~eleEmtk~k~~ke~elee-L~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ 468 (786)
T PF05483_consen 390 SSELEEMTKQKNNKEVELEE-LKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQH 468 (786)
T ss_pred hHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHH
Confidence 2233333333 44444555555554444444444443222222 34566 788888888777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE--------SKKHATSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle--------~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
...||..|+.++..=.-.+..|......|...-.++. +.+.+...+...+.+-+.+.-..+.|-..+..|..
T Consensus 469 yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrn 548 (786)
T PF05483_consen 469 YSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRN 548 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777655555555555554444333220 11222344455555555666666666666666655
Q ss_pred hhhhhhHhhhhh
Q 011943 324 KVNDLSVKLDRQ 335 (474)
Q Consensus 324 kvneL~~~l~~~ 335 (474)
.++.++-++.+.
T Consensus 549 eles~~eel~~k 560 (786)
T PF05483_consen 549 ELESVKEELKQK 560 (786)
T ss_pred HHHHHHHHHHHH
Confidence 555554444433
No 81
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.21 E-value=2.5 Score=50.65 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhh
Q 011943 313 KLITENIELVEKVNDLSVKLDRQSVA 338 (474)
Q Consensus 313 ~LwrEnakL~ekvneL~~~l~~~~~~ 338 (474)
.|-+....+.+.|-.|...|.+-.-+
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~ 771 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISK 771 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566667788888777765444
No 82
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.20 E-value=1.9 Score=44.62 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011943 91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (474)
Q Consensus 91 eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~ 164 (474)
+.-+..|+...+-|+.+-..+...+..+..+.+.+..++.-+.... +.+...++..+..+..+-.+-.++...
T Consensus 12 e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~-~elr~~rdeineev~elK~kR~ein~k 84 (294)
T COG1340 12 ELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKA-QELREERDEINEEVQELKEKRDEINAK 84 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466666777777777777777777777777766655533333 666666666665555555544444443
No 83
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.16 E-value=3.3 Score=47.16 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~ 205 (474)
.+..|..++..+.|....+-..++.++........++..+-.+|..|......+...-..++.++..--+
T Consensus 493 ~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~ 562 (786)
T PF05483_consen 493 NCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE 562 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555666655555555555555555555555555444444444444444333
No 84
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.11 E-value=0.0015 Score=73.22 Aligned_cols=107 Identities=27% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011943 118 LQNECDLYKEKVQAT--LEETIQQLQRQNDLRMQKEATLEETIKQ---LRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (474)
Q Consensus 118 LqeEi~~lkqkLE~l--leEkikQLe~E~~~~lQkeA~lE~kIkd---Lq~~~~s~~QkEa~LEe~IkqLq~EI~~llqK 192 (474)
|+.++..++++|+.+ +..+++.|++++..+++..+.+|..++. ++...+...+.-..++.++.....+++.|...
T Consensus 313 lE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e 392 (713)
T PF05622_consen 313 LENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFE 392 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444332 2334455666666666666666666655 33344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 193 EAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 193 Ea~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
-..+.+++..+..++..|......|++....|
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555554444455444333
No 85
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=1.8 Score=51.22 Aligned_cols=240 Identities=17% Similarity=0.214 Sum_probs=128.8
Q ss_pred HHHHH--HhhhhhhhhhhhHhh------HHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHhHHH
Q 011943 91 EETVK--HLRNERESHIQKEAT------LEGTVQQLQNECDLYKEKVQATL------EETIQQLQRQNDLRMQKEATLEE 156 (474)
Q Consensus 91 eeti~--~l~~e~d~~~~~e~~------~Ee~IkqLqeEi~~lkqkLE~ll------eEkikQLe~E~~~~lQkeA~lE~ 156 (474)
+++-+ .|+++... .|++-. .+..|..+.+++..++..+..+. ...|.-...+...+++..+.+.-
T Consensus 198 ~eaeky~~lkde~~~-~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk 276 (1141)
T KOG0018|consen 198 EEAEKYQRLKDEKGK-AQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDK 276 (1141)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 45555544 222222 24444444444444444332221 12223344455677777788887
Q ss_pred HHHHHHhhhhH------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh------
Q 011943 157 TIKQLRNQNDL------HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL------ 224 (474)
Q Consensus 157 kIkdLq~~~~s------~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF------ 224 (474)
.|++....... -.++-+....+|...+..+......-......|..++...-.+..+..-+++++..-
T Consensus 277 ~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~ 356 (1141)
T KOG0018|consen 277 KISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGS 356 (1141)
T ss_pred HHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77777776555 122233333445555555555444444444445544444444444333333333222
Q ss_pred -----------------Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 225 -----------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 225 -----------------KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
++.+.. ..|+ .++....+-+.....+..-...++++++.+...+..+..+...|-..+.+
T Consensus 357 ~lnl~d~~~~ey~rlk~ea~~~~--~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s 434 (1141)
T KOG0018|consen 357 ELNLKDDQVEEYERLKEEACKEA--LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITS 434 (1141)
T ss_pred cCCcchHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 4555 66666666666666666666777777777766666666666666555555
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhh
Q 011943 287 DESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAA 339 (474)
Q Consensus 287 le~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~~~~~~~ 339 (474)
+ ......+......+...+-.+-.+.+.+.++..+.-.+|...++.+
T Consensus 435 ~------~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr 481 (1141)
T KOG0018|consen 435 L------SRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADR 481 (1141)
T ss_pred H------HHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 5 5556666666677777777777777777776666655554444443
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.02 E-value=4.8 Score=47.69 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011943 112 EGTVQQLQNECDLYKEKV 129 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkL 129 (474)
-..+..|..+++...+++
T Consensus 707 ~~kf~~l~~ql~l~~~~l 724 (1174)
T KOG0933|consen 707 SQKFRDLKQQLELKLHEL 724 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666555554
No 87
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.01 E-value=4.8 Score=47.66 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=38.4
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~i 284 (474)
.+++.+........-+..+...|+..+-.++++|..|..+|..|...-
T Consensus 513 elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~ 560 (1195)
T KOG4643|consen 513 ELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTS 560 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 677777777777777788888888888888888888888888887753
No 88
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.92 E-value=4.4 Score=46.41 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=51.6
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Q 011943 104 HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-KEATLEETIKQLRNQNDLHIQREGGLEMNIANL 182 (474)
Q Consensus 104 ~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQ-keA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqL 182 (474)
-.|+=+.+|+.++-+-.+-+.+++.++.+..+- -..+.+ ..+..-+.|+.|..+.+-.-.+......-|+.|
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~el-------a~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKL 479 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKEL-------AAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKL 479 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 378888888888888888888777765322221 011111 234444555555555555444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 183 QSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 183 q~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
+..+...-.-++...+.|..|+.+..
T Consensus 480 RAk~ke~etl~~K~ge~i~~L~sE~~ 505 (961)
T KOG4673|consen 480 RAKIKEAETLEEKKGELITKLQSEEN 505 (961)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHH
Confidence 55544433333333444444444443
No 89
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.89 E-value=2.3 Score=43.54 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=70.9
Q ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchH
Q 011943 160 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK 239 (474)
Q Consensus 160 dLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLk 239 (474)
+|.+=+.....-++.|+.+|.+++..+-.+......|.-++..+..+. ..-|-.+-+++-.|.
T Consensus 35 El~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~-----------------e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 35 ELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ-----------------EDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 333334456667777777777776666555444444443333332222 122333444555777
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhhhh
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS-SDESKKHATSEQ 297 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq-tle~~~~~~~E~ 297 (474)
..++.......+|++=|-+|+..-.-|+..-..-.-.+..+..++. .+|-+++|.++.
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777777777666665555556667777776 455555554433
No 90
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.87 E-value=3.3 Score=44.62 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 121 ECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 200 (474)
Q Consensus 121 Ei~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL 200 (474)
|-+....+++..-.|+ +..+.+.+.+-|+.++..-.++.+...-....++-..+.++-.+|..+.+++...-..|....
T Consensus 103 er~~~~~El~~~r~e~-~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~ 181 (499)
T COG4372 103 EREAARSELQKARQER-EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASA 181 (499)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666 666666666666666666666666665555555555566666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh--chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 201 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 201 ~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI--sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
.+|..+...|+......|.+-..+ -...+- .+.+.+.+.......+...+..+...++++..+|-.--++|-
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~~~l------a~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~ 255 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEAQNL------ATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIR 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666666555333333333 222222 455555555555555555555555555555555555555555
Q ss_pred HHHhhhhhh
Q 011943 279 SLRSQLSSD 287 (474)
Q Consensus 279 eL~~~iqtl 287 (474)
....+++.+
T Consensus 256 ~re~~lq~l 264 (499)
T COG4372 256 ERERQLQRL 264 (499)
T ss_pred HHHHHHHHH
Confidence 555555544
No 91
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.86 E-value=2.1 Score=42.20 Aligned_cols=134 Identities=22% Similarity=0.286 Sum_probs=83.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 130 QATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (474)
Q Consensus 130 E~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~ 209 (474)
.......|..+..+++.+..-.+++|-...+|... -..++..+.-+.+-|..|+..+.........
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~r--------------yek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~ 129 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKR--------------YEKQKEVIEGYKKNEETLKKCIEEYEERLKK 129 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445556778888888888888888887766655 3344444444555555555444444333322
Q ss_pred HHHhhhhHHHHHHHhHhhh-h--hhhhhhh-----chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 210 LNMKRASLEERLKLLEADK-D--SWTQMES-----VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 210 L~qKQ~~LEERisQFKaER-D--sWLkkEI-----sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
+ +.|+..|++-= . .-...|| .....+..++..+...+.++..|++++.....+|+.|..--++|.
T Consensus 130 ~-------eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 130 E-------EQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22444441100 0 0122333 445567788888889999999999999999999999987777775
Q ss_pred hhh
Q 011943 282 SQL 284 (474)
Q Consensus 282 ~~i 284 (474)
...
T Consensus 203 ~k~ 205 (207)
T PF05010_consen 203 SKM 205 (207)
T ss_pred HHh
Confidence 543
No 92
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.81 E-value=2.8 Score=43.43 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR 253 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq 253 (474)
|...+..|+.+...+.+.++.+..-+-.+......|..+-. .+.+.+.+-+..=..|. .+++.|.....++....
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~----~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELR----QLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444444433333 11111222222223444 56666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.++..++..+..+...|+....+...+..+|++.
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655555555555544
No 93
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.77 E-value=0.07 Score=50.87 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEK 324 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ek 324 (474)
..+......+..|+..+..|...+..|...+.+....++.+ ..|+..|+-++..+......|=.||..||++
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l------~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL------QDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444 6666677778888888888888888888874
No 94
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.76 E-value=1.3 Score=46.35 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
++.+|-++-.-|.+.+..+.+|...++..|+..
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554444433
No 95
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.72 E-value=4.8 Score=45.38 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=38.4
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q 011943 104 HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183 (474)
Q Consensus 104 ~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq 183 (474)
-++-.-..+-+|+.|.+.++.+.+.+.......+.-.+.... -..-.+-+.|.+.......+-..++.+|..++
T Consensus 136 el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~------q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq 209 (629)
T KOG0963|consen 136 ELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLE------QEWAEREAGLKDEEQNLQEQLEELEKKISSLQ 209 (629)
T ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677777777777777665544422111111111 11112333444444444444445555555555
Q ss_pred HHHHH
Q 011943 184 SEKEF 188 (474)
Q Consensus 184 ~EI~~ 188 (474)
.-|..
T Consensus 210 ~a~~~ 214 (629)
T KOG0963|consen 210 SAIED 214 (629)
T ss_pred HHHHh
Confidence 55554
No 96
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.69 E-value=4.7 Score=45.10 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 011943 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ 188 (474)
+.+..|+.++..+..+.+.+..+ +.+++.+.+.+-+++..++..+.. ..+...+.+..++.++..++.+...
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~-i~~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQE-IAHLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544443332222 244444444444444433332222 3344444455555555555555444
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.59 E-value=1.3 Score=40.85 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
..+.........+..+|..|+.....|+..+..+..+..
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444445555566666666666666666666655544
No 98
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=7.1 Score=46.35 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 304 IEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 304 iEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
+..+.-....+-++.+....+|+.|-
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLL 933 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence 33333333333444444444444443
No 99
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=5.8 Score=45.28 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH---
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF--- 188 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~--- 188 (474)
...+..+++.++.....++-.++.-+.+.+.-.+-.++-...++.++.++.+......+.-..+..+....+..-.+
T Consensus 107 ~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s 186 (716)
T KOG4593|consen 107 LTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHS 186 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666665677777777777777777777777666555555444444443333333222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 -WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (474)
Q Consensus 189 -llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~ 267 (474)
+...+..+.....++..+......+++.|++|....+. .+-.-+..+....+..++.....-..+.+.++.+...+-
T Consensus 187 ~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq--~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ 264 (716)
T KOG4593|consen 187 ELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQ--NAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLR 264 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888888888877777665522 111112223344445555555544444445555555555
Q ss_pred HHHHHH
Q 011943 268 QENRQL 273 (474)
Q Consensus 268 eEiq~L 273 (474)
++...+
T Consensus 265 ee~~~~ 270 (716)
T KOG4593|consen 265 EELATL 270 (716)
T ss_pred HHHHHH
Confidence 554433
No 100
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=6 Score=45.30 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHH-----
Q 011943 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS----- 184 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~----- 184 (474)
++.+.+.-.+++......---....-+|+++......+-+++....+-+.++.....++..-+...-.-+.+|..
T Consensus 405 l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~n 484 (698)
T KOG0978|consen 405 LLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKN 484 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444444442222333444455665666666666666666666666555555433222222222211
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHH
Q 011943 185 ------------EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQ 251 (474)
Q Consensus 185 ------------EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~s 251 (474)
.+..+.++...|...+.++.+..+.+.++-+.|||+..-+++-... +.+|+ .++..+...+.....
T Consensus 485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~-l~~el~~~~~~le~~kk~~~e 563 (698)
T KOG0978|consen 485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK-LIKELTTLTQSLEMLKKKAQE 563 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 1111667777777778888888888878888777777777543332 33445 666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
+......|+...+.......++..++.+....+..+
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666555555433
No 101
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.47 E-value=0.0038 Score=71.68 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------h-hhhhhhhhhhhhhHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS--------D-ESKKHATSEQKDFSTQIEAA 307 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt--------l-e~~~~~~~E~~dLksQiEal 307 (474)
.|...+..+..++..|..++..-.+....|...+..+...+..|...+.+ + +.++.+...+.++..+++++
T Consensus 261 ~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~ 340 (859)
T PF01576_consen 261 ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEA 340 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666555555555555555555555555555442 3 23556666777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhhhhhh
Q 011943 308 GALIDKLITENIELVEKVNDLSVKLDRQSV 337 (474)
Q Consensus 308 ~d~RK~LwrEnakL~ekvneL~~~l~~~~~ 337 (474)
......|=+.-.+|...+.+|.+.|+..+.
T Consensus 341 ~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 341 NAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777654443
No 102
>PRK01156 chromosome segregation protein; Provisional
Probab=95.45 E-value=6.7 Score=45.20 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=13.2
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHhhhh
Q 011943 75 EAERQHLLQR--------EAMAILEETVKHLRNE 100 (474)
Q Consensus 75 e~~~~~~~q~--------e~~~~~eeti~~l~~e 100 (474)
..+|..||-+ .+|+-+.++++.++.+
T Consensus 148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~e 181 (895)
T PRK01156 148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRAE 181 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3466666643 2344445555555544
No 103
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.40 E-value=6.4 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhhhhh-hhHhhHH
Q 011943 89 ILEETVKHLRNERESHI-QKEATLE 112 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~-~~e~~~E 112 (474)
.++|.+.+|+..+++.+ |--++.+
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLte 132 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTE 132 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHH
Confidence 57899999999999864 4444433
No 104
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.39 E-value=6.8 Score=44.93 Aligned_cols=24 Identities=42% Similarity=0.583 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 78 RQHLLQREAMAILEETVKHLRNERES 103 (474)
Q Consensus 78 ~~~~~q~e~~~~~eeti~~l~~e~d~ 103 (474)
+.-|-||=| .+|.-+.-+-.|.|.
T Consensus 404 ~~e~~QRva--~lEkKvqa~~kERDa 427 (961)
T KOG4673|consen 404 REEYHQRVA--TLEKKVQALTKERDA 427 (961)
T ss_pred HHHHHHHHH--HHHHHHHHHHHhHHH
Confidence 344556655 555555545445443
No 105
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.37 E-value=5.1 Score=43.40 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=30.0
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
+++ .++..|...+.+...+..+....+..+.-+..|.+++..++.
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~ 216 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 666677777777776666666666666666666666666555
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.31 E-value=1.5 Score=45.47 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH----hhhhHHHHHHHHHHH
Q 011943 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ----REGGLEMNIANLQSE 185 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Q----kEa~LEe~IkqLq~E 185 (474)
+++.....|...+..++...+. +...+..+..=...+..+.+.+..++..|+....--.. --..+.++|+.+..+
T Consensus 141 llegLk~~L~~~~~~l~~D~~~-L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~e 219 (312)
T smart00787 141 LLEGLKEGLDENLEGLKEDYKL-LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQE 219 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555333 22333555555555555555555555555443322111 111122333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 186 I~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
+....++-..++.++..+.+.......+-..+.+.|+..
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333333333
No 107
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.29 E-value=7.7 Score=45.01 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=67.1
Q ss_pred HHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 210 LNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (474)
Q Consensus 210 L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle 288 (474)
|+..+..|+..-+++. |. +.=| .|+..+.+......-|+.+|..|...+..-...+.+...++..++.....+
T Consensus 303 ~~~~qt~l~~~~~~~~---d~--r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~- 376 (775)
T PF10174_consen 303 LEALQTRLETLEEQDS---DM--RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL- 376 (775)
T ss_pred HHHHHHHHHHHHhhHH---HH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444554444444442 22 4556 777888888888888888888888888777777777777777777777766
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 011943 289 SKKHATSEQKDFSTQIEAAGALIDKLITE 317 (474)
Q Consensus 289 ~~~~~~~E~~dLksQiEal~d~RK~LwrE 317 (474)
..++.+|+..++........|.+.
T Consensus 377 -----~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 377 -----QGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766666666
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=4.1 Score=47.20 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=30.8
Q ss_pred Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 225 EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 225 KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
..+|..-|+.|. .|+.++..+...+...+-.++..+..+..+.....-....++.|+.+|+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344455556666 6666666666555555555555555555544443333333333333333
No 109
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.25 E-value=0.0049 Score=70.77 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHhH
Q 011943 147 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK-ISQLRDESAALNMKRASLEERLKLLE 225 (474)
Q Consensus 147 ~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Leee-L~~L~~e~~~L~qKQ~~LEERisQFK 225 (474)
+......++..+..|++..+-.......++.+|..+..++..|..+....-.. +..+...+..|..+-.-+++.+...+
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~ 341 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666555666666666667777777766665553332 44444444444444333344444443
Q ss_pred hhhhhh------hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011943 226 ADKDSW------TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQK 298 (474)
Q Consensus 226 aERDsW------LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~ 298 (474)
...+.| |..|+ .+...+...+..+..|......+...+..|......+....+.++.....+ ..++.
T Consensus 342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~------~te~~ 415 (859)
T PF01576_consen 342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREAREL------ETELF 415 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHH
Confidence 333333 33444 444444444443333333333333333333333333333333332222223 66777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 299 DFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 299 dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
.|+.+++++.+....|-+++..|...+.+|.
T Consensus 416 ~Lk~~lee~~e~~e~lere~k~L~~El~dl~ 446 (859)
T PF01576_consen 416 KLKNELEELQEQLEELERENKQLQDELEDLT 446 (859)
T ss_dssp -------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhccch
Confidence 7777777777777777777777777666663
No 110
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.24 E-value=2 Score=40.04 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHH
Q 011943 171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI 249 (474)
Q Consensus 171 kEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~ 249 (474)
+.-....+|+..+++.+.+..+...|+..|..++..+..+.. .+|. -+.|| +|+..++.+...+
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~------------daEn---~k~eie~L~~el~~lt~el 68 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL------------DAEN---SKAEIETLEEELEELTSEL 68 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH------------HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999999999999988888776653311 1111 24677 8888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
..|..+...+.+....|....+..+.+|++|.....++
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888888888888888888888888888887777655
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.16 E-value=2.7 Score=39.10 Aligned_cols=105 Identities=20% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhc
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV 237 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIs 237 (474)
++..+...++....-..++..|..++.....+.......+..+.+|..+...+..+-..|+..+.-+..+++.|.+.=-.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334333334444444444444444444444444443344444444444443322114
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVELEES 262 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEes 262 (474)
.+..|+.+..-+.++..-+..++..
T Consensus 92 ~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 92 KQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555555555555544444444
No 112
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.16 E-value=3.5 Score=47.32 Aligned_cols=86 Identities=23% Similarity=0.241 Sum_probs=55.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI 186 (474)
+|+-+-..|..|+.++..+++.+.-...|. ..|...+..+.+....+|...+.|+++..-...++..+-.....|+.|+
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~-~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN 106 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAEN-ERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 566677777888888888888776666666 6666666666666666777666666665555555555555555555554
Q ss_pred HHHHHHH
Q 011943 187 EFWLQKE 193 (474)
Q Consensus 187 ~~llqKE 193 (474)
-++.+..
T Consensus 107 islQKqv 113 (717)
T PF09730_consen 107 ISLQKQV 113 (717)
T ss_pred HHHHHHH
Confidence 4444433
No 113
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.13 E-value=0.3 Score=50.37 Aligned_cols=51 Identities=33% Similarity=0.386 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
.....+..++.++..+.++|..+.++|..|+.+...+.+-...|+.....+
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888888888888888877766666666665555
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.13 E-value=0.16 Score=48.37 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 178 ~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
.+..|++|+..+.=.-..++.++..|+.++..|
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.88 E-value=2.8 Score=37.81 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 249 ITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 249 ~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
-..|..++..++.++..|..+|.-|-.+|..
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556666666666666666555543
No 116
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.86 E-value=7.7 Score=42.68 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=10.7
Q ss_pred CCccccchHHHHHHHHHH
Q 011943 66 NGAESANLAEAERQHLLQ 83 (474)
Q Consensus 66 ~~~~~~~~~e~~~~~~~q 83 (474)
.-++.-+..|.++...|.
T Consensus 45 ~~k~~l~~~E~~k~~~l~ 62 (522)
T PF05701_consen 45 KLKEQLEAAEREKAQALS 62 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555666777666654
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.78 E-value=7.4 Score=42.17 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHH
Q 011943 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 176 (474)
Q Consensus 97 l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LE 176 (474)
+..+....-+.-.-|++.|+.++.+|..+...| .+...+.+..-+.++.++-.|..|+... .+++..|.
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql--------~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La 118 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQL--------IETADDLKKLRKQIADLNARLNALEVQE---REQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 333333344445556666777777776666664 6666777777777777777777777765 45555566
Q ss_pred HHHHHHHH
Q 011943 177 MNIANLQS 184 (474)
Q Consensus 177 e~IkqLq~ 184 (474)
..|.-++.
T Consensus 119 ~~L~A~~r 126 (420)
T COG4942 119 EQLAALQR 126 (420)
T ss_pred HHHHHHHh
Confidence 66555544
No 118
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.74 E-value=9.7 Score=45.20 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011943 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (474)
Q Consensus 244 sl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~ 289 (474)
........+..+...++....-....+...++.|..++..+++.+.
T Consensus 315 ~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 315 EIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3333444444444455555555666666666667777777765433
No 119
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=5.8 Score=40.57 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
|..-+...+..-+.+..++-+|..|....+....+...+.+++.+++.+|..+.++-..+++.|...
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677777777777777777777777777777777777777777777777777777777654
No 120
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.69 E-value=0.0087 Score=67.16 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHhhhhhhhh--hh----h----chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 215 ASLEERLKLLEADKDSWTQ--ME----S----VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 215 ~~LEERisQFKaERDsWLk--kE----I----sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+.|+=+...|+.++.+|.. +. + .+-..|..++.....|..+...+..++..+...++.|...+..+
T Consensus 308 ~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l 383 (722)
T PF05557_consen 308 AELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQL 383 (722)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344466777888999932 11 1 23334444444444444444444444444444444444433333
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.58 E-value=3 Score=47.80 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 256 VVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 256 V~~LEesl~sL~eEiq~LkeqIseL 280 (474)
....++-+...-++|..+..+|+.+
T Consensus 687 ~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 687 KRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 122
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=94.54 E-value=1.9 Score=42.09 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=54.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011943 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIEL 321 (474)
Q Consensus 242 Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL 321 (474)
|..++..|..|+.+=++|..-+-.|.-.-++-+.=-.+|+.= .-. .-.....++..+..++-++....+.|.++|..|
T Consensus 57 IR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrF-Gry-ta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRF-GRY-TASVMRQEVAQYQQKLKELEDKQEELIRENLEL 134 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHh-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344445555555555555555555544433333211123210 000 011225678888888999999999999999999
Q ss_pred HhhhhhhhHhhhhhhh
Q 011943 322 VEKVNDLSVKLDRQSV 337 (474)
Q Consensus 322 ~ekvneL~~~l~~~~~ 337 (474)
+| ||+-||....
T Consensus 135 KE----lcl~LDeer~ 146 (195)
T PF10226_consen 135 KE----LCLYLDEERP 146 (195)
T ss_pred HH----HHHHHhcccc
Confidence 95 9999998883
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.48 E-value=0.76 Score=47.42 Aligned_cols=96 Identities=16% Similarity=0.313 Sum_probs=63.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI 186 (474)
.+......+.+++.++..++++ +..+...++.|+.++..+.+....++...+.|.......-.....+.-++-+++.+.
T Consensus 37 ~~~~~~~~~~~~~~el~~le~E-e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 37 EESDSEEDIEELEEELEKLEQE-EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp -----HH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344566677888888888887 455556668888888888888888888888887776666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011943 187 EFWLQKEAALEQKISQL 203 (474)
Q Consensus 187 ~~llqKEa~LeeeL~~L 203 (474)
+++..+-.-+..+|..|
T Consensus 116 ~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555555555
No 124
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.44 E-value=0.24 Score=42.05 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=46.7
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
..| -|+..|..++..+..|..++..+......|..+|++|+..-..|+.++..+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 677778888888889999999999999999999999999999999998876
No 125
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.35 E-value=9.2 Score=41.36 Aligned_cols=168 Identities=10% Similarity=0.106 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (474)
Q Consensus 118 LqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Le 197 (474)
+...|..++-+|+....++ .+.+.+++..-+.....-.+-+..+.+.....++..+....+.++......+..+-..+-
T Consensus 79 i~~qlr~~rtel~~a~~~k-~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 79 IRPQLRALRTELGTAQGEK-RAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556656666 777777777766666666666667777777777777777778888887777888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhHhhh-hhhhhhh-h-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 198 QKISQLRDESAALNMKRASLEERLKLLEADK-DSWTQME-S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (474)
Q Consensus 198 eeL~~L~~e~~~L~qKQ~~LEERisQFKaER-DsWLkkE-I-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lk 274 (474)
.+-.+|....++|+.-+.-|.--.+|++.++ |..+..+ | --...+....+...++.++...+....-.+..+|+++-
T Consensus 158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd 237 (499)
T COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777777778885443 3323222 2 22334455566666677777777777777777777777
Q ss_pred HHHHHHHhhhhh
Q 011943 275 ENVSSLRSQLSS 286 (474)
Q Consensus 275 eqIseL~~~iqt 286 (474)
.+|+.+..++..
T Consensus 238 ~~i~q~~q~iaa 249 (499)
T COG4372 238 AQISQKAQQIAA 249 (499)
T ss_pred HHHHHHHHHHHh
Confidence 777666666553
No 126
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=0.27 Score=41.13 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=44.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
-|...|..++..+.+|+.++..+...+..|..++++|+..-..|+.++.++
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788899999999999999999999999999999999998876
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.21 E-value=8.2 Score=40.26 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 194 a~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
..|.++++.|+.++..|...-..|-.....+... ...|-. .-=..++.-+..+..|..++....++....-++|-+|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek-EqqLv~--dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEK-EQQLVL--DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH-HHHHHH--HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665544333222222222110 111111 2234566777777888888888888888888888888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 274 KENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 274 keqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
..+|-.++.+.+.+ ..+.++|...+.+..+---.|-.+-..|.+|--|.
T Consensus 240 lsqivdlQ~r~k~~------~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 240 LSQIVDLQQRCKQL------AAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877 78899999998888888888888888888765554
No 128
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=14 Score=41.52 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 011943 109 ATLEGTVQQLQNECDLYKEKVQAT 132 (474)
Q Consensus 109 ~~~Ee~IkqLqeEi~~lkqkLE~l 132 (474)
-.|+..|..|+.+.+.+.++|+.+
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqt 69 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQT 69 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888887553
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.63 E-value=11 Score=39.61 Aligned_cols=18 Identities=44% Similarity=0.562 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 011943 312 DKLITENIELVEKVNDLS 329 (474)
Q Consensus 312 K~LwrEnakL~ekvneL~ 329 (474)
..|.-||-.|.|+++.+.
T Consensus 192 DaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 192 DALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444444
No 130
>PF15294 Leu_zip: Leucine zipper
Probab=93.37 E-value=7.7 Score=39.97 Aligned_cols=82 Identities=28% Similarity=0.388 Sum_probs=64.4
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh---------H
Q 011943 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND---------L 167 (474)
Q Consensus 97 l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~---------s 167 (474)
|.-.++.... .++-+.|..|+.|+..++-.+ ..++.....++...+.++-.|++|+...+ .
T Consensus 118 L~pl~e~g~~--~ll~kEi~rLq~EN~kLk~rl--------~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~ 187 (278)
T PF15294_consen 118 LEPLNESGGS--ELLNKEIDRLQEENEKLKERL--------KSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSF 187 (278)
T ss_pred cccccccchH--HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 6667776433 788899999999999888775 77888999999999999999999999333 3
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 011943 168 HIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 168 ~~QkEa~LEe~IkqLq~EI~~ 188 (474)
..|.-..|+.++..++.+...
T Consensus 188 ~~q~l~dLE~k~a~lK~e~ek 208 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSELEK 208 (278)
T ss_pred cccchhhHHHHHHHHHHHHHH
Confidence 344445578888888777666
No 131
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.35 E-value=11 Score=38.70 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=11.3
Q ss_pred hhhhhHhhhhhhhhhccccccc
Q 011943 325 VNDLSVKLDRQSVAAGLSSAIG 346 (474)
Q Consensus 325 vneL~~~l~~~~~~~~~ss~~~ 346 (474)
+..+...++....-++.++-+.
T Consensus 262 l~~~~~~l~~~~i~AP~dG~V~ 283 (423)
T TIGR01843 262 LNKARDRLQRLIIRSPVDGTVQ 283 (423)
T ss_pred HHHHHHHHhhcEEECCCCcEEE
Confidence 3344334444445566666553
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.29 E-value=2.4 Score=46.15 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
-...|.+....+++.+.+.++.|+.|++|+.++==.+.
T Consensus 415 w~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 415 WRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 33445555666666666777777777777776643333
No 133
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.28 E-value=23 Score=42.29 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011943 77 ERQHLLQREAM-----AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKE 151 (474)
Q Consensus 77 ~~~~~~q~e~~-----~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQke 151 (474)
....+++.+.+ -+.+|+|..|+.+.+..--....+++.++.+..++.....++..+..++ .++..+...+.+.+
T Consensus 616 k~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er-~~~~~~~~~~~~r~ 694 (1072)
T KOG0979|consen 616 KSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRER-TKLNSELKSYQQRK 694 (1072)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence 34455555551 2445667777777777777777788888888888888888888888888 88888888888888
Q ss_pred HhHHHHHHHH
Q 011943 152 ATLEETIKQL 161 (474)
Q Consensus 152 A~lE~kIkdL 161 (474)
+.+|-.+.+|
T Consensus 695 ~~ie~~~~~l 704 (1072)
T KOG0979|consen 695 ERIENLVVDL 704 (1072)
T ss_pred HHHHHHHHHH
Confidence 8888765544
No 134
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.25 E-value=22 Score=42.91 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=23.6
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
.++..+.+...-..-++.+...+...+..++.+++.|++.++.
T Consensus 191 ~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 191 ELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555666666666666666666664
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.20 E-value=13 Score=39.91 Aligned_cols=26 Identities=4% Similarity=0.227 Sum_probs=14.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHh
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQAT 132 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~l 132 (474)
.-..++..+.+++.++.....++...
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655443
No 136
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.13 E-value=0.097 Score=58.97 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 296 EQKDFSTQIEAAGALIDKLITENIELVEKVND 327 (474)
Q Consensus 296 E~~dLksQiEal~d~RK~LwrEnakL~ekvne 327 (474)
.+..|+.++..+......|-++...|..++-.
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566655555555555555544443
No 137
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.06 E-value=12 Score=38.65 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011943 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 168 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~ 168 (474)
.+.--..+++.|..-.+..-.-||..|+.|+..+..++-.-.....+. ..-+.+. .+.+..+|.+++...+-+
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee-e~kR~el------~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREE-EEKRKEL------SEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHhc
Confidence 333344556777777788888999999999999998887643332222 2222222 234455566655555544
Q ss_pred HHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 169 IQREGGLEMNIAN----LQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 169 ~QkEa~LEe~Ikq----Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
......+-+.-.. |+.-++.+-.+|..+...+....-+...+.+|-.
T Consensus 127 ~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~ 177 (309)
T PF09728_consen 127 SERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLE 177 (309)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444333333222 3333444556666777777776666666655544
No 138
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.04 E-value=8.6 Score=44.61 Aligned_cols=189 Identities=20% Similarity=0.223 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~L 217 (474)
.++=..+.+.+...+.++..|.+|....+--......|.. +..-.++|.............+.... ..-......|
T Consensus 519 ekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD-v~s~~sEIK~~f~~~ss~e~E~~~~d---ea~~~~~~el 594 (769)
T PF05911_consen 519 EKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD-VSSMRSEIKKNFDGDSSSEAEINSED---EADTSEKKEL 594 (769)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHhhhhcccccccccchH---HHHHHHHHHH
Confidence 4556778888889999999999999998888888877766 33333333332222111111111110 1122223344
Q ss_pred HHHHHHhHhhhhhh------hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011943 218 EERLKLLEADKDSW------TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (474)
Q Consensus 218 EERisQFKaERDsW------LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~ 290 (474)
++++..++.++..+ ....+ .++..+...+..+..|+.+...++++....+.+++..++....+..++..+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~--- 671 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL--- 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---
Confidence 45555555444433 12344 556666666666666666666666666666666666666666666666655
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhh
Q 011943 291 KHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 336 (474)
Q Consensus 291 ~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~~~~ 336 (474)
..++..|..++..|...-..=..--..+--|-.+|+-+|....
T Consensus 672 ---e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 672 ---EAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 4556666666665555544433334444445556665554433
No 139
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.99 E-value=9 Score=36.83 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=62.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh-----HHHHhhhhHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND-----LHIQREGGLEMNIAN 181 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~-----s~~QkEa~LEe~Ikq 181 (474)
.+.+++..|+++++.+...+..+-...... .+++.+.+.+....+..+.....-=.... ...++...++..+..
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999987777777 77777777777777777776655422221 122333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
|+..++........|+..|..+..+.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444444444444443333
No 140
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.92 E-value=7.3 Score=41.68 Aligned_cols=174 Identities=22% Similarity=0.236 Sum_probs=96.8
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHh
Q 011943 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 171 (474)
Q Consensus 92 eti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Qk 171 (474)
.-|+.|..+.+.|+|--+-=......|+.+-..+++.++--.+++ +.. |..-++| ++....
T Consensus 118 Kli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~-kK~--------------E~~k~Kl----~~qLee 178 (561)
T KOG1103|consen 118 KLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEK-KKA--------------EIAKDKL----EMQLEE 178 (561)
T ss_pred HHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH-HHH--------------HHHHHHH----HHHHHH
Confidence 347778888888888777666666666666666666665544444 222 1111111 111122
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHH
Q 011943 172 EGGLEMNIAN-LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT 250 (474)
Q Consensus 172 Ea~LEe~Ikq-Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~ 250 (474)
+-..+++|.. |--|-...+.+.++...+-.++--++..-...-..+++ .+-+||.--|+.|.-....|+....+..
T Consensus 179 Ek~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~ee---e~aaERerglqteaqvek~i~EfdiEre 255 (561)
T KOG1103|consen 179 EKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEE---EAAAERERGLQTEAQVEKLIEEFDIERE 255 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChH---HHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 2222222221 11111112222233222222221111000000000111 1246777778888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
-|+.+...++.+-.-+.+++.+|++.+..++-.++-+
T Consensus 256 ~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 256 FLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9999999999999999999999999999888777744
No 141
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.75 E-value=18 Score=39.80 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHH
Q 011943 141 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 176 (474)
Q Consensus 141 e~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LE 176 (474)
+.++..|-......+.++..|+........-+..|.
T Consensus 210 ~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~ 245 (522)
T PF05701_consen 210 EQDAEEWEKELEEAEEELEELKEELEAAKDLESKLA 245 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666677777777777755555555444
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.71 E-value=13 Score=42.80 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011943 133 LEETIQQLQRQNDLRMQKEATLEETIKQL 161 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE~kIkdL 161 (474)
++.+++.|..+....++....++.+++.|
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 143
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.64 E-value=8.9 Score=35.93 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 011943 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~l 189 (474)
.+.-++..++..+.....-=+.+-.-.+.||+-++..+..++..-...+..|+.......+.-...-+++.-+..++..+
T Consensus 17 ~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l 96 (177)
T PF13870_consen 17 TLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544433555566779999999999999999999999999999998888888877777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 190 LQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 190 lqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
...-......+..+..+.........
T Consensus 97 ~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 97 KQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555544433333
No 144
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.48 E-value=5.6 Score=36.25 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 151 eA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
...+..++..+...+......-..|.+++..++.++..+..++..+..++..+
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.40 E-value=23 Score=40.15 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
.-|+.+...+-++....|..+..|+.++..
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556666666777777777777777776554
No 146
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.37 E-value=28 Score=41.05 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhh--hhhhh-chHHHHhhhHHHHHHHHHHH
Q 011943 180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQV 256 (474)
Q Consensus 180 kqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsW--LkkEI-sLke~Issl~~~~~sLq~QV 256 (474)
...+..+-.|.++-+.+++++.++..+-..|..|-+ .+..|+...+-+- +.+++ .|...|..+......+...-
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~---di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYD---DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555888888888888888888887877776 3333442222221 22223 44444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 257 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 257 ~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
.....-++++..|...|..++..++..+..+ .+.......+++.+...+..+..
T Consensus 490 e~~~~~le~l~~El~~l~~e~~~lq~~~~~~------~qs~~~~~~~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 490 ESQAKALESLRQELALLLIELEELQRTLSNL------AQSHNNQLAQLEDLLKQKDRLAA 543 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444444555555555555555555555444 44444444455555544444443
No 147
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.37 E-value=5.4 Score=45.83 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAG 308 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~ 308 (474)
.+.+..-++.+.|.++..+++.++..+.-.-..+ ...+.+|+.++++++
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl------~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKL------RTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHH
Confidence 3344444555556666666666665554444444 777888888888888
No 148
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.29 E-value=22 Score=39.52 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--Hhhhhhh
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSW 231 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF--KaERDsW 231 (474)
+-..|+.|+.+-.....-...++.-.+.++.....|......|...+...+.+..+|..+..+|--.+..- --+-=..
T Consensus 293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~ 372 (622)
T COG5185 293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFEL 372 (622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHH
Confidence 34455555555555555566666677777777777888888888888888888877777777665554433 1111122
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 232 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
+..|- .|.+.+..++-+...|...|...+-...+.-.+...+..+.++|..+|.
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444 6778888888888888888887766666666665555555555555444
No 149
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.26 E-value=34 Score=41.73 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 011943 116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 116 kqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ 188 (474)
..+.+.+....+. ....++.|++...+....-+.+++++....--+....+..|+-.+|+..+..|+..+..
T Consensus 1566 e~V~eaL~~Ad~A-q~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1566 EDVVEALEEADVA-QGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444 34456677777777777777777777777777777777777777777777777776665
No 150
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.96 E-value=34 Score=41.12 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 011943 73 LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEA 152 (474)
Q Consensus 73 ~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA 152 (474)
-+|-+-+.|-++-- -|.+-|+.|.. .-+ ...--+-.|.-|+..|..+...++.+. -.+.+++.+..-+.-...
T Consensus 649 wdek~~~~L~~~k~--rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k-~~l~~~~~El~~~~~~i~ 721 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKE--RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLK-RSLEQNELELQRTESEID 721 (1141)
T ss_pred cCHHHHHHHHHHHH--HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45666666655544 56777777766 333 334445566777777777777766655 344555555554444444
Q ss_pred hHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 011943 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 153 ~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ 188 (474)
.+--+|-.+....+........|+++++.+++.|=.
T Consensus 722 ~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 722 EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555566666666655533
No 151
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=91.93 E-value=29 Score=40.27 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhhhhhhhHhh---HHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHH---HHhHHHHHH
Q 011943 89 ILEETVKHLRNERESHIQKEAT---LEGTVQQLQNECDLYKE---KVQATLEETIQQLQRQNDLRMQK---EATLEETIK 159 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~---~Ee~IkqLqeEi~~lkq---kLE~lleEkikQLe~E~~~~lQk---eA~lE~kIk 159 (474)
+|.|+|.+|++|.|..+-.-.. |.....-|+.|+...+- -+--.+.+++.+|..+.+.-+.. ...+..++.
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 6888899999888876543322 33344444444433210 01112455666777776665554 223444444
Q ss_pred HHHhhh
Q 011943 160 QLRNQN 165 (474)
Q Consensus 160 dLq~~~ 165 (474)
-|+...
T Consensus 539 ~Lk~~~ 544 (762)
T PLN03229 539 MLNEFS 544 (762)
T ss_pred HHHHHH
Confidence 444443
No 152
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.80 E-value=7.4 Score=35.33 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 244 sl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.....+..|+.++..|+.+...+.+=.=.--+.+.+|+..+..+
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33344445555555555555554444444444444444444433
No 153
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.73 E-value=18 Score=37.34 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=39.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 127 EKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 127 qkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
+++++.++..+.|++..++++.-..-.+-.....++++++ ...+..-.++.+|+.+...+...-.++.+-|++|+..
T Consensus 44 rE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e---~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE---DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555555444333333333333333322 1223344455556666666555556666666666666
Q ss_pred HHHHH
Q 011943 207 SAALN 211 (474)
Q Consensus 207 ~~~L~ 211 (474)
++.|.
T Consensus 121 NDdLE 125 (333)
T KOG1853|consen 121 NDDLE 125 (333)
T ss_pred ccHHH
Confidence 66553
No 154
>PRK11281 hypothetical protein; Provisional
Probab=91.62 E-value=39 Score=41.01 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 011943 84 REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQAT 132 (474)
Q Consensus 84 ~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~l 132 (474)
+.+.+.++.|+..|. +.+.+-++-..+.+.+.+...++....+.++.+
T Consensus 59 k~~~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 59 KLVQQDLEQTLALLD-KIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444556677766654 344455555566677777777777776666543
No 155
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.50 E-value=3.3 Score=34.46 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (474)
Q Consensus 135 EkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~ 201 (474)
+-+.+|+.....++-.++.++.++.+|+.++....+....|..+..+|+.+...|..+-..+=.+|+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4467788888888888899999999999888888877777777777777777666665555444443
No 156
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.38 E-value=27 Score=38.80 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ll 190 (474)
+++.|.++++++......|+.+-.+. .-.....+...|..|-+..+.-...+...+..+..+..-+....
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~l~~----------~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~ 319 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLELDE----------VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAK 319 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555555555555555543333222 22333344455555555555555555555555555555444444
Q ss_pred HHHHHHHHHHHHH
Q 011943 191 QKEAALEQKISQL 203 (474)
Q Consensus 191 qKEa~LeeeL~~L 203 (474)
..-..+..++..+
T Consensus 320 ~~~~~l~~e~~~v 332 (560)
T PF06160_consen 320 EQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 157
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.35 E-value=29 Score=39.03 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011943 179 IANLQSEKEFWLQKEAALEQKIS 201 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~ 201 (474)
..+|+.++..+..+-...+.++.
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 158
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=36 Score=40.21 Aligned_cols=231 Identities=20% Similarity=0.190 Sum_probs=114.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHhH
Q 011943 78 RQHLLQ-REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK--VQATLEETIQQLQRQNDLRMQKEATL 154 (474)
Q Consensus 78 ~~~~~q-~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqk--LE~lleEkikQLe~E~~~~lQkeA~l 154 (474)
||+|.| |-+|++++.-+..|... .-+-|+--..-+.++++=++++=-+ +.--....|-.+=.+....+|+++.+
T Consensus 556 rq~~~~~r~~ld~leaa~e~lE~r---~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL 632 (984)
T COG4717 556 RQHWQQLRKALDQLEAAYEALEGR---FAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAEL 632 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667764 78899999888887654 2222333333333333333332111 11111222233344566667777777
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 011943 155 EETIKQLRNQNDLHIQREGGLEMNIAN-----------------LQSEKEFWLQKEAALEQKIS----QLRDESAALNMK 213 (474)
Q Consensus 155 E~kIkdLq~~~~s~~QkEa~LEe~Ikq-----------------Lq~EI~~llqKEa~LeeeL~----~L~~e~~~L~qK 213 (474)
...+..|.....+...+-+.+-.-+.. ....++.|...-..+....+ .|.++...+
T Consensus 633 ~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~--- 709 (984)
T COG4717 633 THQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELH--- 709 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH---
Confidence 777777776666655555544333321 11111112221111222222 333333322
Q ss_pred hhhHHHHHHHh-----Hhhhhhhhh--hhh-chHHHHhhhHHHHHHH--------------------HHHHHHHHHHHHH
Q 011943 214 RASLEERLKLL-----EADKDSWTQ--MES-VSKETIAGLSVDITQL--------------------RMQVVELEESRNN 265 (474)
Q Consensus 214 Q~~LEERisQF-----KaERDsWLk--kEI-sLke~Issl~~~~~sL--------------------q~QV~~LEesl~s 265 (474)
..++..| -.++|.+.. .+- .++...+.+......| ..+...+++.+..
T Consensus 710 ----~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~ 785 (984)
T COG4717 710 ----RKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDA 785 (984)
T ss_pred ----HHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1233443 233343311 111 2222222222222222 2566677788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 266 LLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELV 322 (474)
Q Consensus 266 L~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ 322 (474)
+.+++..+..++..+..++..+|.. ..++.|+.+++-+-...+.--++=++|+
T Consensus 786 ~~ee~~el~a~v~~~~~qi~~lE~g----~~~a~lr~~~~slk~~l~e~ar~Wasl~ 838 (984)
T COG4717 786 LDEEVEELHAQVAALSRQIAQLEGG----GTVAELRQRRESLKEDLEEKARKWASLR 838 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889899999999888888888442 3455666666655555555555544444
No 159
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=91.24 E-value=34 Score=39.73 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHhhhhHHHHhhh-----hHHH
Q 011943 110 TLEGTVQQLQNECDLYK----EKVQATLEETIQQLQRQNDLRMQ---KEATLEETIKQLRNQNDLHIQREG-----GLEM 177 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lk----qkLE~lleEkikQLe~E~~~~lQ---keA~lE~kIkdLq~~~~s~~QkEa-----~LEe 177 (474)
=|+..+..|+.+|-..+ +=++-.+.++|++|..+.+.-+- +-..++.++.-|+.++.-.. ... .|-+
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~-~~~~~~~~~L~e 511 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN-SQDQLMHPVLME 511 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-cccccccHHHHH
Confidence 36677777777776665 44555677888888888876543 34456667777775443321 000 1556
Q ss_pred HHHHHHHHHHH
Q 011943 178 NIANLQSEKEF 188 (474)
Q Consensus 178 ~IkqLq~EI~~ 188 (474)
++..|+.|+..
T Consensus 512 K~~kLk~Efnk 522 (762)
T PLN03229 512 KIEKLKDEFNK 522 (762)
T ss_pred HHHHHHHHHHH
Confidence 67777777777
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.02 E-value=14 Score=41.77 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 011943 109 ATLEGTVQQLQNECDLYKEKVQA 131 (474)
Q Consensus 109 ~~~Ee~IkqLqeEi~~lkqkLE~ 131 (474)
..++..+..|+.++.....+++.
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555444444444433
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.98 E-value=5.7 Score=39.66 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 220 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 220 RisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
.+..+..+++.++..-...-+.|...+.++..|..-++.++.+.+.....++.+.+.+.-|
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555444455555555555666666666655555555555555554444433
No 162
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.91 E-value=30 Score=38.47 Aligned_cols=248 Identities=15% Similarity=0.221 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHH----
Q 011943 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA----------TLEETIQQLQRQNDLRMQK---- 150 (474)
Q Consensus 85 e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~----------lleEkikQLe~E~~~~lQk---- 150 (474)
+.++-.++.|+.+.++.+-.+..|.--...|.+|.+....+++.+-. .++..+..++.++..+-.-
T Consensus 108 ~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 108 EQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33555666777777777777777777777777777776666666432 1223333333333222111
Q ss_pred --------HHhHHHHHHHHHhhhhHHHHh----hhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 011943 151 --------EATLEETIKQLRNQNDLHIQR----EGGLEMNIANLQSEKEF------------WLQKEAALEQKISQLRDE 206 (474)
Q Consensus 151 --------eA~lE~kIkdLq~~~~s~~Qk----Ea~LEe~IkqLq~EI~~------------llqKEa~LeeeL~~L~~e 206 (474)
...++..+..|+...+.--.- ...+-.+|..|+..+.. ...+-..++.++..+...
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 112222222222222211111 11223333444444433 333334444444444333
Q ss_pred HHHHHHhh-----hhHHHHHHHh----Hhhhhh--hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 011943 207 SAALNMKR-----ASLEERLKLL----EADKDS--WTQMES-VSKETIAGLSVDITQLRMQVVELEESRN---NLLQENR 271 (474)
Q Consensus 207 ~~~L~qKQ-----~~LEERisQF----KaERDs--WLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~---sL~eEiq 271 (474)
...|.... ..+.++|.+| ..|-++ .+.+.. .+...|......+..|..++.++..+.. +......
T Consensus 268 L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~ 347 (560)
T PF06160_consen 268 LKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVR 347 (560)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 33322222 2344455555 222221 134444 6677777777777778777777776653 2233344
Q ss_pred HHHHHHHHHHhhhhhh---------------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 272 QLKENVSSLRSQLSSD---------------ESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 272 ~LkeqIseL~~~iqtl---------------e~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
.+..++..+..++..+ +.-..+...+..+..+..++......|..++..-.+++..|..+|
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444321 112333455666666677777777778888877777777776555
No 163
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.73 E-value=35 Score=38.86 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=26.3
Q ss_pred ccchhhhhccccccccccCccCCCC---------CcCCCchhHhHHHHhhcccc
Q 011943 421 EVQDLELQVVESYTDKVAAVPLTDA---------PLIGAPFRLVSFVAKYVSGA 465 (474)
Q Consensus 421 ~~~~~~~q~~~~~~d~~~~vp~~da---------p~igapfrlisfva~yvsga 465 (474)
+--|+++|.+..|++... ||.-. -..|+-||+..-.+||+.|-
T Consensus 541 ~~~d~e~~y~~~yee~l~--p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~n 592 (629)
T KOG0963|consen 541 ESSDVESQYSAAYEESIS--PFASFRKKERERKYKRLGSFERITLSLGRTLLFN 592 (629)
T ss_pred CCcchhhhhhhHHHhhcC--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445667777777666432 33221 23567778888888887763
No 164
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.67 E-value=39 Score=39.41 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNN 265 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF--KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~s 265 (474)
+..+-..+..+|..+..++..|.. .|.+|-.-+ -.+.-+-.-.|+ .|..++.+...+|.+|+.++-.+.+++.-
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~---~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSK---ALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554421 122232222 222333445677 88888999999999999999888888876
Q ss_pred HHHHHHHHHHH
Q 011943 266 LLQENRQLKEN 276 (474)
Q Consensus 266 L~eEiq~Lkeq 276 (474)
...|-.--+..
T Consensus 167 r~~E~~~~~~~ 177 (769)
T PF05911_consen 167 RNEEREYSRRA 177 (769)
T ss_pred HHHHHHHhHHH
Confidence 66554433333
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.67 E-value=9.6 Score=41.76 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 011943 138 QQLQRQNDLRMQKEATLEE 156 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~ 156 (474)
.||+..+..+.+....++-
T Consensus 328 sqleSqr~y~e~~~~e~~q 346 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQ 346 (493)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 5677777777766555554
No 166
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.63 E-value=2.1 Score=35.61 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
+...+..|..+...|+...+.|...+..|..++
T Consensus 37 L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 37 LKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444455555555555554443
No 167
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.57 E-value=40 Score=39.38 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQA 131 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~ 131 (474)
+...+..+...+..+....+.
T Consensus 230 l~~e~e~l~~~~~el~~~~~~ 250 (908)
T COG0419 230 LEQEIEALEERLAELEEEKER 250 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444433
No 168
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.53 E-value=19 Score=35.56 Aligned_cols=224 Identities=14% Similarity=0.189 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011943 87 MAILEETVKHLRNERESH-IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 165 (474)
Q Consensus 87 ~~~~eeti~~l~~e~d~~-~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~ 165 (474)
++.+.+++..|.....-. -++....+..++.+.+.+..+...|+.-...+ .+....+|. .++..|..+.+..
T Consensus 7 L~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R-----~E~~~~lq~--~~e~~i~~~~~~v 79 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRR-----VESNKKLQS--KFEEQINNMQERV 79 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHHHH
Confidence 445666666665554333 34555666677777777777776655433333 222222222 4555555555554
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHh----HhhhhhhhhhhhchHH
Q 011943 166 DLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA-ALNMKRASLEERLKLL----EADKDSWTQMESVSKE 240 (474)
Q Consensus 166 ~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~-~L~qKQ~~LEERisQF----KaERDsWLkkEIsLke 240 (474)
... +.....+++.-++.+..+-..+...|..-...+. .+.....+|...+..| ..||..|..+|-.+-.
T Consensus 80 ~~~------~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k 153 (247)
T PF06705_consen 80 ENQ------ISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILK 153 (247)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2223333333344444444444443333333332 2333344455566655 8899999999985555
Q ss_pred HHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLS-VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENI 319 (474)
Q Consensus 241 ~Issl~-~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEna 319 (474)
.+.... .....+..+....+..+..+..++..+..........++.+ ...|++.++.-+......| -..+.
T Consensus 154 rl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~-----v~~Ei~~lk~~l~~e~~~R---~~~Dd 225 (247)
T PF06705_consen 154 RLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNF-----VLEEIAALKNALALESQER---EQSDD 225 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHH---Hhhhh
Confidence 554333 33345556666667777777777777776666666666653 1345555554444444444 45677
Q ss_pred HHHhhhhhhhHh
Q 011943 320 ELVEKVNDLSVK 331 (474)
Q Consensus 320 kL~ekvneL~~~ 331 (474)
..|.-+|...-.
T Consensus 226 ~Iv~aln~yt~~ 237 (247)
T PF06705_consen 226 DIVQALNHYTKA 237 (247)
T ss_pred HHHHHHHHHHHH
Confidence 778777776533
No 169
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.28 E-value=19 Score=35.09 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhh
Q 011943 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 172 (474)
Q Consensus 93 ti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkE 172 (474)
.|+.|+++..- +...+..|..|+..+++- ..-..-.|...+....++-|-++.....|+-|+....-.....
T Consensus 13 ki~~L~n~l~e-------lq~~l~~l~~ENk~Lk~l-q~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 13 KIKELQNELAE-------LQRKLQELRKENKTLKQL-QKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555432 233445555555555443 3334444556666667777777777777777777766666666
Q ss_pred hhHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEF 188 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~ 188 (474)
-.++.+|+....++-.
T Consensus 85 r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 85 RELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555555443
No 170
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=90.14 E-value=21 Score=35.53 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=38.7
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.++ ++...+......+..+...+..|+..+..|...|.+++.+...+.-+..
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 7777777777778888888888888888888888777777776665555
No 171
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.03 E-value=4.1 Score=33.87 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=52.2
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 146 LRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 146 ~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
++.++++.....|+.|..+......++..+..+|+.|+..+......-..+..++..+..+...|
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999999999999998888888887777777777777776666544
No 172
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.98 E-value=20 Score=37.27 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 119 QNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ 198 (474)
Q Consensus 119 qeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Lee 198 (474)
.+++.+...+..-.+..- .||++++..++..+-.+..+|.++++. +.+++.++......-..++.
T Consensus 83 k~~l~evEekyrkAMv~n-aQLDNek~~l~yqvd~Lkd~lee~eE~--------------~~~~~re~~eK~~elEr~K~ 147 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSN-AQLDNEKSALMYQVDLLKDKLEELEET--------------LAQLQREYREKIRELERQKR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555556 889999999988888888877776554 55555555544444455555
Q ss_pred HHHHHHHHHHHH
Q 011943 199 KISQLRDESAAL 210 (474)
Q Consensus 199 eL~~L~~e~~~L 210 (474)
.+..|+.++..|
T Consensus 148 ~~d~L~~e~~~L 159 (302)
T PF09738_consen 148 AHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 173
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.95 E-value=8.4 Score=34.63 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 144 ~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
+..+--..+.++..|...+..++-....+..|...+.+|+....+..+.-+.+..+|..+.....
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444445555555555555555555555555555544443
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.88 E-value=39 Score=38.14 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=49.0
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q 011943 104 HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183 (474)
Q Consensus 104 ~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq 183 (474)
.=+++..+++..+.|+.-+..++--+ .++..-...+.++++.+...|..-.++++...+....|...|..=.
T Consensus 257 ~~~~~eslre~~~~L~~D~nK~~~y~--------~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 257 DPGKEESLREKKARLQDDVNKFQAYV--------SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666666666666555555554 3333344444444444444444444443333333333322221100
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 011943 184 ---SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 219 (474)
Q Consensus 184 ---~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEE 219 (474)
.+...-...-..+.+.|..++.+.+.|.++-..++=
T Consensus 329 iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 329 ISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 001113344445556666666666666555444433
No 175
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.59 E-value=27 Score=35.82 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 011943 263 RNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 263 l~sL~eEiq~LkeqIseL~~~iq 285 (474)
+..+..++..++..+..++..+.
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433
No 176
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.52 E-value=58 Score=39.59 Aligned_cols=47 Identities=9% Similarity=0.275 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011943 83 QREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQ 130 (474)
Q Consensus 83 q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE 130 (474)
|+++.+.++.|+.-|.+= +-.-++-.-+.+.|.+.-.++..+.++++
T Consensus 43 ~k~~~~~l~~tl~~l~~~-~~~~~~~~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 43 QAEIVEALQSALNWLEER-KGSLERAKQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566677777777766543 33335555666666666666666666655
No 177
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.47 E-value=5.1 Score=33.75 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
+.+|+......+-.++-+.+.|.+|++++.+..|....+......|+.++.++.++-..-.++|+.|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777788888888888888877766666666666666666666665555555555544
No 178
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.43 E-value=15 Score=36.33 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhccccc
Q 011943 302 TQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSA 344 (474)
Q Consensus 302 sQiEal~d~RK~LwrEnakL~ekvneL~~~l~~~~~~~~~ss~ 344 (474)
.+...+..++..+=+-+..+.||..-+ +.--..+...++.
T Consensus 128 eR~~Rl~~L~~~l~~~dv~~~ek~r~v---lea~~~E~~yg~~ 167 (251)
T PF11932_consen 128 ERQERLARLRAMLDDADVSLAEKFRRV---LEAYQIEMEYGRT 167 (251)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHH---HHHHHHHHHhCCc
Confidence 345566666666666677777766655 2333444444443
No 179
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.18 E-value=24 Score=34.83 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 134 eEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
..++..+...+.....-+..+|.+|.++=.. ..+........|..+..+.+.+..--..++..+..|+..
T Consensus 29 ~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~r 98 (207)
T PF05010_consen 29 KKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKR 98 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Confidence 3344666677777778888888888886655 333344556667777777777777766777666655443
No 180
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.91 E-value=26 Score=34.75 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH---
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF--- 188 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~--- 188 (474)
+..-.++++.+..+..+|+-..+=- ...+..+..-.++.+-+|-.+.....+-+....+=..|++.+..+.+...+
T Consensus 52 enr~~kdEE~~e~~e~qLkEAk~ia-E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 52 ENRAQKLEEKMEAQEAQLKEAKHIA-EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 3344445555555444443332222 345557778889999999999988888888888888899998888888777
Q ss_pred ----HHHHHHHHHHHHHHHHHHH
Q 011943 189 ----WLQKEAALEQKISQLRDES 207 (474)
Q Consensus 189 ----llqKEa~LeeeL~~L~~e~ 207 (474)
+.+++..++.+|+.+.++.
T Consensus 131 ~ee~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 131 KEEKLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 181
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.81 E-value=34 Score=35.95 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhHhhhh
Q 011943 296 EQKDFSTQIEAAG-ALIDKLITENIELVEKVNDLSVKLDR 334 (474)
Q Consensus 296 E~~dLksQiEal~-d~RK~LwrEnakL~ekvneL~~~l~~ 334 (474)
+.-+|...++.-+ ..+..||..=.+|-..=--|..+|++
T Consensus 164 EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 164 EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444444333 35666676665555544455555554
No 182
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.54 E-value=71 Score=39.36 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=42.6
Q ss_pred HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 225 KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
+-+....+...+.++..+......+......+..+++++..+.+++..+...+.++..+++.+
T Consensus 849 ~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 849 VIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPL 911 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcch
Confidence 444445555556666666666666666667777777777777777777777777777777654
No 183
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.50 E-value=44 Score=36.95 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHH
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 260 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LE 260 (474)
.+..+..+.+-...|..++..|-++. ||++..+|..-+.. +|..-+.=++..+..++.+|....
T Consensus 97 ~~ek~~~l~~~~~~L~~~F~~LA~~i---------le~k~~~f~~~~~~------~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 97 ADDKIRQMINSEQRLSEQFENLANRI---------FEHSNRRVDEQNRQ------SLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444456666677777777775543 56666677422211 334444555555555555555444
No 184
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.36 E-value=39 Score=36.18 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-QREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~-QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
.+.-++.+....-++....|..+.+|+.++.... .....+..+|..++........+....+.++..+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777777777788888888877665421 1112233444444444444333333333333333
No 185
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.29 E-value=33 Score=35.25 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQ 160 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkd 160 (474)
++..|..|+.++..+..++.. +.++|.+++.+...+=++++.++..|.+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~-~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDE-LQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555322 2333344444444444444444443333
No 186
>PRK10698 phage shock protein PspA; Provisional
Probab=88.23 E-value=28 Score=34.34 Aligned_cols=107 Identities=15% Similarity=0.199 Sum_probs=51.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHh-----hhhHHHHHHHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR-----EGGLEMNIANL 182 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Qk-----Ea~LEe~IkqL 182 (474)
+.+++-.|+++++.+...++.+-...... +.++.+...+-...+..+.+..--=....-..-+ .....+++..|
T Consensus 26 ~k~l~q~i~em~~~l~~~r~alA~~~A~~-k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l 104 (222)
T PRK10698 26 QKLVRLMIQEMEDTLVEVRSTSARALAEK-KQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATL 104 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766665555555 5555555555555555554443322221111111 12234444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 183 QSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 183 q~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
+.++.........|+..+..|+.+...+..|+.
T Consensus 105 ~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 105 EHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444444444444444433333333
No 187
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.05 E-value=58 Score=37.73 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=49.0
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
+-..|..|+++.-.+-|..+||-..+++=.++++.=.-.-+. +...+...+..+..+-++-+..|..++-+.+...+..
T Consensus 336 L~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~skt-LQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q 414 (739)
T PF07111_consen 336 LRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKT-LQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQ 414 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677777777777777776665555555433333222 3333366666666777777777777777777766655
Q ss_pred H
Q 011943 170 Q 170 (474)
Q Consensus 170 Q 170 (474)
+
T Consensus 415 ~ 415 (739)
T PF07111_consen 415 Q 415 (739)
T ss_pred H
Confidence 5
No 188
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.51 E-value=56 Score=36.96 Aligned_cols=92 Identities=16% Similarity=0.279 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q 011943 142 RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES----------AALN 211 (474)
Q Consensus 142 ~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~----------~~L~ 211 (474)
.....+-++.+.++..+..+++-.....++...++..|..|+.||..-.-+-..+..+.+.|+... ...-
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn 338 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMN 338 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 334444455556666666666666666666666666666666666553333333333333332221 1112
Q ss_pred HhhhhHHHHHHHhHhhhhhhhh
Q 011943 212 MKRASLEERLKLLEADKDSWTQ 233 (474)
Q Consensus 212 qKQ~~LEERisQFKaERDsWLk 233 (474)
+-...|..-+...+.++|.|.+
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2223344455555667777643
No 189
>PLN03188 kinesin-12 family protein; Provisional
Probab=87.44 E-value=55 Score=40.21 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=63.2
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Q 011943 104 HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183 (474)
Q Consensus 104 ~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq 183 (474)
-|.+|..+++.|.+--.+|..+.+-+..-.+|+ ++...+-. +-|.+|..|+.-.+.-.-.+.-+++++..|.
T Consensus 875 a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~------~~~~~~~~--~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~ 946 (1320)
T PLN03188 875 AIRREMALEEFCTKQASEITQLNRLVQQYKHER------ECNAIIGQ--TREDKIIRLESLMDGVLSKEDFLEEELASLM 946 (1320)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh------hhhHHHhh--hhhhhHHHHhhhcccccchhhhhhhhhhhhh
Confidence 478888999999999999988888765544544 44444433 7788898888888888788888888888888
Q ss_pred HHHHHHHHHHH
Q 011943 184 SEKEFWLQKEA 194 (474)
Q Consensus 184 ~EI~~llqKEa 194 (474)
.+...+.+++.
T Consensus 947 ~~~~~~~~~y~ 957 (1320)
T PLN03188 947 HEHKLLKEKYE 957 (1320)
T ss_pred hhHHHHHHHhh
Confidence 88877766554
No 190
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.42 E-value=53 Score=36.63 Aligned_cols=88 Identities=11% Similarity=0.199 Sum_probs=62.1
Q ss_pred HHHHhhhhhhhh---hhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 93 TVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 93 ti~~l~~e~d~~---~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
-|-.|+.+||-. ||.---+-..|+.|++.-..++.. ....+.-..+++.....|.-+...+...|..-++++.+..
T Consensus 272 ~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D-~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 272 DIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSD-SNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 345566666653 454445556677777777777777 5566666678888888888888888777777777777777
Q ss_pred HhhhhHHHHHHH
Q 011943 170 QREGGLEMNIAN 181 (474)
Q Consensus 170 QkEa~LEe~Ikq 181 (474)
.++..|..+|..
T Consensus 351 ~~~d~L~~q~~k 362 (622)
T COG5185 351 SNIDELHKQLRK 362 (622)
T ss_pred hhHHHHHHHHHh
Confidence 777777766544
No 191
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=87.11 E-value=4.2 Score=33.49 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALID 312 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK 312 (474)
..|..+|..|=.....|..+|..|+.++..|......+ .+.+...+++++++...-+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L------~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQL------LEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhh
Confidence 45556666666666666666666666666666666655 5555555666666555443
No 192
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=86.82 E-value=28 Score=32.86 Aligned_cols=118 Identities=24% Similarity=0.252 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~L 217 (474)
-++..+..-+.++++.++..++-|+.-..++.-.-..+ -..++=.++.+-+.+..+|..|.-+...+..|.-.|
T Consensus 26 ~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl------~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l 99 (147)
T PF02090_consen 26 LQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVL------SREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQL 99 (147)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777776665554431111 122344478889999999999999999999999999
Q ss_pred HHHHHHhHhhhhhhhhhhhchHHHHhhhHH--HHHHHHHHHHHHHH
Q 011943 218 EERLKLLEADKDSWTQMESVSKETIAGLSV--DITQLRMQVVELEE 261 (474)
Q Consensus 218 EERisQFKaERDsWLkkEIsLke~Issl~~--~~~sLq~QV~~LEe 261 (474)
+.....++..|.-|+.++-.-..-+.+++. .+..|+.+.+++++
T Consensus 100 ~ke~~~~~~~r~~wlrK~dkY~rw~~~~kr~~r~~~l~qeE~E~EE 145 (147)
T PF02090_consen 100 EKEKQEQQEQRKHWLRKEDKYDRWQQRQKRLRRLQQLRQEETEQEE 145 (147)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998865555544433 34466666666553
No 193
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.62 E-value=91 Score=38.52 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=40.4
Q ss_pred cccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 011943 58 VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETI 137 (474)
Q Consensus 58 ~~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEki 137 (474)
|+.||+-..|+=.--.. -....||=..| ++..=...|..|+.+|..+...+..+ .+.+
T Consensus 708 v~~dG~~r~G~l~G~~~-k~~a~~IG~~a--------------------R~~~R~~ri~el~~~IaeL~~~i~~l-~~~l 765 (1353)
T TIGR02680 708 IDVDGRFRLGVLRGAWA-KPAAEYIGAAA--------------------RERARLRRIAELDARLAAVDDELAEL-AREL 765 (1353)
T ss_pred ECCCCceeeeeeecccC-CcchhHhhHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 67788777775321111 22255555555 45667889999999999999887442 2222
Q ss_pred HHHHHHHHHH
Q 011943 138 QQLQRQNDLR 147 (474)
Q Consensus 138 kQLe~E~~~~ 147 (474)
..|......+
T Consensus 766 ~~l~~r~~~L 775 (1353)
T TIGR02680 766 RALGARQRAL 775 (1353)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 194
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.50 E-value=34 Score=33.40 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=61.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH-----hhhhHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ-----REGGLEMNIAN 181 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Q-----kEa~LEe~Ikq 181 (474)
-+.+++..|+++++.+...++.+-...... +.++.+...+-...+..+.+...-=....-..- .....++++..
T Consensus 25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~-k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~ 103 (219)
T TIGR02977 25 PEKMIRLIIQEMEDTLVEVRTTSARTIADK-KELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEA 103 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888876666666 666666666666666666555443332222222 22234444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
|+..+..+......++.+|..|+.+...+..|..
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444444444444
No 195
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.38 E-value=36 Score=33.65 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLR 162 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq 162 (474)
.++.++...+......++..+..|+
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 196
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.32 E-value=60 Score=36.07 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 011943 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqk 128 (474)
.|+-.|+.|+ |.|-|+-.+=+.|.+|+.-+.+|...
T Consensus 342 yLe~kvkeLQ----~k~~kQqvfvDiinkLk~niEeLIed 377 (527)
T PF15066_consen 342 YLEKKVKELQ----MKITKQQVFVDIINKLKENIEELIED 377 (527)
T ss_pred HHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4555555544 56777777777777777776666543
No 197
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.18 E-value=6.9 Score=32.51 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 220 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 220 RisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
.|.+|..|-..|-++|..+...|..++..+..+..++..+...+...+.++..|+..+.
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777766777777777777777777777777777777777777777777776665543
No 198
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.16 E-value=42 Score=38.53 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011943 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESR 263 (474)
Q Consensus 184 ~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl 263 (474)
.-++......+.+.+.|...+++...|.+--+ ...-+. + ...+.+.+|+..+.++...+..|+.+-.+...++
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~----~~~~~~--~-~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef 126 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALG----EPSIIG--E-ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEF 126 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Cccccc--c-cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555554433222 111110 0 2334566999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh---hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 264 NNLLQENRQLKENVSSLRSQLSSD---ESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 264 ~sL~eEiq~LkeqIseL~~~iqtl---e~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
..+-.+++.|-..|.+...-...+ +..-. ....+.|+.++..|...+-.=..+...+++.+..||=.|
T Consensus 127 ~el~~qie~l~~~l~g~~~~~~~~~~D~~dls-l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 127 KELYHQIEKLCEELGGPEDLPSFLIADESDLS-LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHhcCCccCCcccccCccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988888661111110 11111 156778888888888888888888888888888888444
No 199
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.98 E-value=24 Score=39.43 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh------hhhHhhH---------HHHHHHHHHHH---HHHHHHHHHhhHHHHHHH
Q 011943 79 QHLLQREAMAILEETVKHLRNERESH------IQKEATL---------EGTVQQLQNEC---DLYKEKVQATLEETIQQL 140 (474)
Q Consensus 79 ~~~~q~e~~~~~eeti~~l~~e~d~~------~~~e~~~---------Ee~IkqLqeEi---~~lkqkLE~lleEkikQL 140 (474)
-..+|++-...|.+.+|-+++||... +..|++. -.-+++|++-+ ...+..|+.+..+- .++
T Consensus 153 ~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el-~~q 231 (596)
T KOG4360|consen 153 RSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKEL-SRQ 231 (596)
T ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 35688888889999999999998763 3223221 12233333333 33333333333333 455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh-------hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 141 QRQNDLRMQKEATLEETIKQLRNQN-------DLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205 (474)
Q Consensus 141 e~E~~~~lQkeA~lE~kIkdLq~~~-------~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~ 205 (474)
..++..++-.++.+..+|+-+.=++ ....+....+.+++..++.......+...+.+++|++|..
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566666666666666665554332 2233444556666777777777777777777777777754
No 200
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=85.81 E-value=27 Score=32.12 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHh-Hhhhhhhhhhhh
Q 011943 173 GGLEMNIANLQSEKEFWLQKEAALEQKI----SQLRDESAALNMKRASLEERLKLL-EADKDSWTQMES 236 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKEa~LeeeL----~~L~~e~~~L~qKQ~~LEERisQF-KaERDsWLkkEI 236 (474)
+..+.++++|+.+...+.++|.+...+. ..+...+..+.....++++++..+ ....-.|-+.|-
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eY 91 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEY 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHH
Confidence 4566778888888888888887766544 345667778888888999999999 444445666544
No 201
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.54 E-value=62 Score=35.59 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 256 VVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 256 V~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
-..+.-.+..-..|++.|+.++...-
T Consensus 357 ~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 357 KSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455567788888888877654
No 202
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.36 E-value=36 Score=32.71 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~ 216 (474)
+..+++=...+=|.+..++..|.+++............++.++..++..+..|..+-..- |...+..|..
T Consensus 18 ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A------l~~g~edLAr---- 87 (221)
T PF04012_consen 18 LDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA------LAAGREDLAR---- 87 (221)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHH----
Confidence 344444556666667777777777777777777777777777777777777765543211 1111111100
Q ss_pred HHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 217 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 217 LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.+|.+-..+...+..+...+..+..++..|+..+..+...+..++.+...+..+..
T Consensus 88 -------------~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 88 -------------EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111114444555555555555555555555555555555555555554444443
No 203
>PRK10698 phage shock protein PspA; Provisional
Probab=85.32 E-value=41 Score=33.24 Aligned_cols=115 Identities=14% Similarity=0.194 Sum_probs=87.8
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
+++++..++...-..|-.+..++..+.+++..+.....+-+..+..= -++=-...+......+..+..|+.......
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G---~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~ 112 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKE---KEDLARAALIEKQKLTDLIATLEHEVTLVD 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776667788888999999999999999998865544422 122334556667778888899999888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 170 QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
..-..|...+..|+..+..+..+-..|..+....++..
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888777777666554
No 204
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.27 E-value=9.6 Score=32.61 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG-------GLEMNIANLQSEKEFWLQKEAALEQK 199 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa-------~LEe~IkqLq~EI~~llqKEa~Leee 199 (474)
+.||+.....++-.++-+..+|.+|+.++....+.-. .|..+..+|+.+...|..+-..|=.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777788888888888888777666533 35555566666666565554444333
No 205
>PLN02939 transferase, transferring glycosyl groups
Probab=85.03 E-value=96 Score=37.32 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEESRNNLL------QENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITEN 318 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~------eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEn 318 (474)
++..|+.+|-.|++++.... .-++-+++++.-++.+++.. .......+.-....+++.++.-+.|..|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (977)
T PLN02939 325 QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS--DHEIHSYIQLYQESIKEFQDTLSKLKEES 399 (977)
T ss_pred cchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34467777777777765432 22344557777777777754 11112233334444555555555544443
No 206
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.02 E-value=34 Score=35.13 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=32.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.++..|.....++.+++.++..+..+-.+|+..|+..+..+.-.+.+++++
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666555555555554
No 207
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.92 E-value=16 Score=33.23 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhh
Q 011943 311 IDKLITENIELVEKV 325 (474)
Q Consensus 311 RK~LwrEnakL~ekv 325 (474)
.++-=+|-.+|++++
T Consensus 135 ~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 135 LRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333334444454443
No 208
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.89 E-value=10 Score=31.35 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
|+..|..|+..++.+.+++++.-.+- +.|..+++..+......=..+.+|+.+++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~-k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIEN-KRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433333 555555555555555554444444444433
No 209
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=84.63 E-value=20 Score=35.03 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=56.8
Q ss_pred HHh---Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhh
Q 011943 222 KLL---EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN--NLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 222 sQF---KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~--sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.|| -.+-+.-|..+| .|++.+.++..++.....++..|...++ .+.++|++|+..+.....++..+
T Consensus 71 DqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 71 DQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 346677788999 9999999999999999999999998765 78899999999999998888877
No 210
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.52 E-value=57 Score=34.30 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHH
Q 011943 88 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA-------TLEETIQQLQRQNDLRMQ 149 (474)
Q Consensus 88 ~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~-------lleEkikQLe~E~~~~lQ 149 (474)
+.|+..-+.|+-|.++.-.+-..|...++.|....-.+..+.|. .+.-+|.+|..+...++.
T Consensus 30 ~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~ 98 (310)
T PF09755_consen 30 ESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLAL 98 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777777777777777777776665555444332 334455666666666543
No 211
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.50 E-value=91 Score=36.58 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011943 112 EGTVQQLQNECDLYKEK 128 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqk 128 (474)
...+..|..++..+...
T Consensus 500 ~~e~~~l~~~l~~~~~~ 516 (908)
T COG0419 500 REEIEELEKELRELEEE 516 (908)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 212
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.46 E-value=62 Score=34.66 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 011943 85 EAMAILEETVKHLRNERES 103 (474)
Q Consensus 85 e~~~~~eeti~~l~~e~d~ 103 (474)
-|-..++.-||++.+.++-
T Consensus 68 aa~~llq~kirk~~e~~eg 86 (401)
T PF06785_consen 68 AAGQLLQTKIRKITEKDEG 86 (401)
T ss_pred HHHHHHHHHHHHHHhccHH
Confidence 3444677777777655543
No 213
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.40 E-value=87 Score=36.65 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 220 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (474)
Q Consensus 220 RisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lk 274 (474)
|+.-...+|-.-|.+=..|...+.+.++.+..+++....|...++.|-.++.+|+
T Consensus 203 rlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 203 RLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444433333355555555555555555555555555555555555555
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.23 E-value=12 Score=36.75 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=39.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
++...+..++.++..|+.+...+..+.+ +....+...+......+..+ ..++..|+.++..+...+..|-.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L------~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGL------KEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655555555444333 33333333344444444444 55555555555555555555555
Q ss_pred HHHHHHh
Q 011943 317 ENIELVE 323 (474)
Q Consensus 317 EnakL~e 323 (474)
++..+..
T Consensus 161 ~~~~~~~ 167 (206)
T PRK10884 161 QLDDKQR 167 (206)
T ss_pred HHHHHHH
Confidence 5555543
No 215
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.00 E-value=39 Score=33.86 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (474)
Q Consensus 244 sl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~ 283 (474)
.++..+.++..+-...+..+.-+-.+..-|+.+|+.+...
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455555555555544333
No 216
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=82.11 E-value=9 Score=32.06 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011943 195 ALEQKISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESR 263 (474)
Q Consensus 195 ~LeeeL~~L~~e~~~L~qKQ~~LEERisQF-KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl 263 (474)
..+..|+.|..++=.|..+--.|++|+.++ -......++.-|.|+..+.++..++..++..+..++.++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888888888877 333333344444777777777777776666666666554
No 217
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=82.08 E-value=37 Score=30.58 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
+...+.+|+.+++.+.+.-..+...+.++..-.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544443333
No 218
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.54 E-value=72 Score=33.29 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=75.8
Q ss_pred HHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHh
Q 011943 147 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 226 (474)
Q Consensus 147 ~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKa 226 (474)
.+|++..+|-.+..|+-+. .|+.. +|..|+.-.....++...-+.+...|.-++..|. |-...+..
T Consensus 16 aLqKIqelE~QldkLkKE~---qQrQf----QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~-------e~c~~lek 81 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKER---QQRQF----QLESLEAALQKQKQKVEEEKNEYSALKRENQSLM-------ESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH----hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH-------HHHHHHHH
Confidence 4566666666666665442 22222 2344444444455555555555555555554332 22233322
Q ss_pred hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------------hhhh
Q 011943 227 DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES------------KKHA 293 (474)
Q Consensus 227 ERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~------------~~~~ 293 (474)
-|+ ||.-++ .-.-.|..+...+.+...++..|+.++.-+..+....+.........+.-+.- .-..
T Consensus 82 ~rq-Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~ 160 (307)
T PF10481_consen 82 TRQ-KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYS 160 (307)
T ss_pred HHH-HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhh
Confidence 232 333444 44445555555555555555555555555544444443333322222220000 0112
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITE 317 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrE 317 (474)
...+.+|+.++..-...||.|=.|
T Consensus 161 ~sk~e~L~ekynkeveerkrle~e 184 (307)
T PF10481_consen 161 DSKYEELQEKYNKEVEERKRLEAE 184 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHH
Confidence 256777777777777777777555
No 219
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.38 E-value=33 Score=31.86 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 176 Ee~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
.+++..+..+|..+..+-..++..+..|..+...|
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544
No 220
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.29 E-value=57 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 179 IANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
|..++..+..+...-..+..++..+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 221
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.28 E-value=72 Score=33.13 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=52.8
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 102 ESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 102 d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
+..+++-+=+....+.++..+..+......+..++ .++..++..++-....+|.-=++|+-.|....
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek-~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEK-DQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777778888888888888888888888 88999999888888888888777777665444
No 222
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.07 E-value=74 Score=33.09 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=62.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHH--H
Q 011943 106 QKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL--Q 183 (474)
Q Consensus 106 ~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqL--q 183 (474)
+.-.++...|..|..+-..+++..+. ....-.-++...|+.|-...++.+.+....+..+--..++.++ .
T Consensus 101 ~~~rll~d~i~nLk~se~~lkqQ~~~--------a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD 172 (330)
T KOG2991|consen 101 KYTRLLSDDITNLKESEEKLKQQQQE--------AARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD 172 (330)
T ss_pred cccchhHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence 44567777788777777777766432 3334567888889999988888888887777665544443331 1
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 011943 184 SEKEF----WLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 184 ~EI~~----llqKEa~LeeeL~~L~~e~~~L 210 (474)
--|.. +...-.+.+.+|.+++++.++|
T Consensus 173 PAinl~F~rlK~ele~tk~Klee~QnelsAw 203 (330)
T KOG2991|consen 173 PAINLFFLRLKGELEQTKDKLEEAQNELSAW 203 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 11222 5556666677777777777655
No 223
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.00 E-value=61 Score=32.07 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011943 87 MAILEETVKHLRNERESHIQKEATLEGTV-QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 165 (474)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ee~I-kqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~ 165 (474)
+..+.+.|.+|.....+.+++-+=..+.+ +.+...+..+...++.....++.++....+.+..+...++..|.+.+...
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999998888877665554444 45777888888888888888989999999999999999999888888776
Q ss_pred hHHHHhh-hhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 011943 166 DLHIQRE-GGLEMNIANLQSEKEF----WLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 166 ~s~~QkE-a~LEe~IkqLq~EI~~----llqKEa~LeeeL~~L~~e~~ 208 (474)
....... ..+...|..|...++. +..+|..+-.+|........
T Consensus 116 ~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~ 163 (247)
T PF06705_consen 116 PQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQ 163 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544333 3355556665544444 88888888888877755553
No 224
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.80 E-value=1.5e+02 Score=36.61 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011943 113 GTVQQLQNECDLYKEKV 129 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkL 129 (474)
++|.+|-.+|.+...+|
T Consensus 1511 eqi~~L~~~I~e~v~sL 1527 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASL 1527 (1758)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45666666666555443
No 225
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.55 E-value=1.1e+02 Score=34.61 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011943 193 EAALEQKISQLRDESAALNMK 213 (474)
Q Consensus 193 Ea~LeeeL~~L~~e~~~L~qK 213 (474)
...|..+|..+..++..|.+|
T Consensus 161 ~EaL~ekLk~~~een~~lr~k 181 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSK 181 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHH
Confidence 344555555555555544443
No 226
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.48 E-value=19 Score=29.76 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011943 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (474)
Q Consensus 134 eEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqK 192 (474)
+..|.-|++..+.+..+....+..++.|..+.++....-...-.++..|+.+++.+.++
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888889999999999999888888888888888888888887777666
No 227
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.39 E-value=77 Score=35.35 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
+..-|++|+.+|+.|........+=.+ |+..|
T Consensus 409 L~~~EE~Lr~Kldtll~~ln~Pnq~k~----Rl~~L 440 (508)
T KOG3091|consen 409 LTPDEEELRAKLDTLLAQLNAPNQLKA----RLDEL 440 (508)
T ss_pred CCccHHHHHHHHHHHHHHhcChHHHHH----HHHHH
Confidence 555688888888888888877755555 55555
No 228
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.37 E-value=88 Score=33.56 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=10.5
Q ss_pred hhHhhhhhhhhhccccccc
Q 011943 328 LSVKLDRQSVAAGLSSAIG 346 (474)
Q Consensus 328 L~~~l~~~~~~~~~ss~~~ 346 (474)
+...|+....-++.++-+.
T Consensus 310 a~~~l~~~~I~AP~dG~V~ 328 (457)
T TIGR01000 310 LKEDSQKGVIKAPEDGVLH 328 (457)
T ss_pred HHHHHhCCEEECCCCeEEE
Confidence 3334444455577777654
No 229
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.25 E-value=55 Score=31.16 Aligned_cols=96 Identities=21% Similarity=0.305 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHH
Q 011943 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEES 262 (474)
Q Consensus 184 ~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEes 262 (474)
.+...+.++-..++.++...-++.+.|..+.-..--|+..--..-+.+...+| .-.+....++..+..++.++..|...
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~r 106 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRER 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555555444443333333333444455677888 88888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011943 263 RNNLLQENRQLKENVSS 279 (474)
Q Consensus 263 l~sL~eEiq~LkeqIse 279 (474)
++.|+.....|...|.-
T Consensus 107 RD~LErrl~~l~~tier 123 (159)
T PF05384_consen 107 RDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888887773
No 230
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=79.93 E-value=37 Score=28.88 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
.+.+..++.|++.+.+.+......+ ..++......++-...+--++-+|... |..-+..-+++|.+|+.+++
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~-~e~e~ki~~Qi~Em~~ir~~v~eLE~~---h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQK-DEYEHKINSQIQEMQQIRQKVYELEQA---HRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777666666655 666777777777777777777777665 44444455677777766654
No 231
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.91 E-value=1.2e+02 Score=34.73 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011943 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 257 (474)
Q Consensus 190 lqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~ 257 (474)
..-..++..-+..+..-+..|.++...+.++++.+...|..||+.++ .-...++..-..+...-+++.
T Consensus 149 ~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k 217 (611)
T KOG2398|consen 149 KEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFK 217 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 34445667777777778889999999999999999999999999999 777777666666555544444
No 232
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.74 E-value=24 Score=40.14 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
++.++..|+.+|..|..+-.+|+..+..|.++.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 233
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.21 E-value=73 Score=31.94 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQ 160 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkd 160 (474)
.|++.+....-+.....+.++..
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~ 37 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEE 37 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 234
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.21 E-value=1.1e+02 Score=33.88 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 156 ~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
..|..++......++......+.|.+++.++.....-...+..++..+
T Consensus 339 d~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehl 386 (502)
T KOG0982|consen 339 DLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHL 386 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555554444444444444444
No 235
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=78.96 E-value=1.1e+02 Score=33.76 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhhHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 88 AILEETVKHLRNERESHIQKEATLE----GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 88 ~~~eeti~~l~~e~d~~~~~e~~~E----e~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
..+...+..++.++....+-+.... ..++.|++.+..+...+..-. .....-...++++....+.....|..
T Consensus 126 ~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~----~~~~~~~~~fl~rtl~~e~~~~~L~~ 201 (511)
T PF09787_consen 126 RRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKRED----GNAITAVVEFLKRTLKKEIERQELEE 201 (511)
T ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444433322222222 223555555555544432221 22333445666666677766666666
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHhH
Q 011943 164 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE-SAALNMKRASLEERLKLLE 225 (474)
Q Consensus 164 ~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e-~~~L~qKQ~~LEERisQFK 225 (474)
......+ -...-.+...++..++.+...-...+.+|.+-..+ ...|..|+. ++..||
T Consensus 202 ~~~A~~~-~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEk----lI~~LK 259 (511)
T PF09787_consen 202 RPKALRH-YIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEK----LIESLK 259 (511)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHH----HHHHHH
Confidence 5552222 22222233333344444433334444444444322 223444444 555553
No 236
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.10 E-value=1.4e+02 Score=34.50 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA---NLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~Ik---qLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ 214 (474)
.++..+...+.+.......++...-........-...|++.+. .++..+..+.......++++..|+.+...|.++.
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333332222233333322 3444444455555555555555555555555554
Q ss_pred hhHHHHHHHh
Q 011943 215 ASLEERLKLL 224 (474)
Q Consensus 215 ~~LEERisQF 224 (474)
..|......|
T Consensus 258 ~~l~~~~~~~ 267 (670)
T KOG0239|consen 258 KELNDQVSLL 267 (670)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 237
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=77.97 E-value=1.1e+02 Score=33.76 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
...+..-+..++..++...--...++..++++-.+.
T Consensus 74 ~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~ 109 (459)
T KOG0288|consen 74 EEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEF 109 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444555555555555555555555555555554443
No 238
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=77.87 E-value=16 Score=31.02 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEA 306 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEa 306 (474)
+.....+......+..+-..++..+++-..|++.++..|.+|+.+..++ ++.-.+++..|+.+++.
T Consensus 10 r~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km--K~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 10 RQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM--KQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 3334444555556666777888888889999999999999998888876 44445666777766654
No 239
>PF13514 AAA_27: AAA domain
Probab=77.17 E-value=1.7e+02 Score=35.15 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011943 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKL 314 (474)
Q Consensus 249 ~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~L 314 (474)
...+..++..++..+..+..++..+...+..++.++..++.. ..+..+..+++.+.+.-..+
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~----~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEALEGD----DDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777777766322 23344455544444443333
No 240
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.88 E-value=94 Score=31.93 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 011943 269 ENRQLKENVSSL 280 (474)
Q Consensus 269 Eiq~LkeqIseL 280 (474)
+|+.++..+..+
T Consensus 187 ~N~~m~kei~~~ 198 (258)
T PF15397_consen 187 ENQVMQKEIVQF 198 (258)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 241
>PRK11519 tyrosine kinase; Provisional
Probab=76.36 E-value=1.1e+02 Score=35.00 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 134 eEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
..++.-|+.+...+-++....|..+.+|+.++..
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444667777777888888888888888887754
No 242
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.27 E-value=25 Score=40.19 Aligned_cols=86 Identities=24% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011943 217 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSE 296 (474)
Q Consensus 217 LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E 296 (474)
++||+.+|..+|+++..+=-.|.+++..+...|..|.-=+..-...++..++-.|+-.=++.+|+++-=.+ -.+
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDL------mae 182 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDL------MAE 182 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHH------HHH
Confidence 56788888888898877666888888888888888876666665556555555554433333443332222 334
Q ss_pred hhhhHHHHHHHH
Q 011943 297 QKDFSTQIEAAG 308 (474)
Q Consensus 297 ~~dLksQiEal~ 308 (474)
+-.|+-.+.++.
T Consensus 183 vSeLKLkltalE 194 (861)
T KOG1899|consen 183 VSELKLKLTALE 194 (861)
T ss_pred HHHhHHHHHHHH
Confidence 445554444443
No 243
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=76.16 E-value=8.4 Score=34.30 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=30.6
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
|-..+..+...+..|..++..|+..+..+.+||..|+-.-..|..++..+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666655555555555443
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.77 E-value=83 Score=30.79 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 011943 115 VQQLQNECDLYKEKVQATL 133 (474)
Q Consensus 115 IkqLqeEi~~lkqkLE~ll 133 (474)
|.++..+.+.+..+++..+
T Consensus 29 l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 29 LQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 245
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.90 E-value=65 Score=29.12 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=34.3
Q ss_pred hhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 215 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 215 ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
++|+.-+...|..++.|.++=-.|+..+..++.++.++..-+.+|+..++.+...+..-+..--.++.++.
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556666332224555555555555555555555555555555444443333224433333
No 246
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=74.62 E-value=1e+02 Score=31.30 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=14.2
Q ss_pred HHHHhhhhHHHHHHHh----Hhhhhhhhh
Q 011943 209 ALNMKRASLEERLKLL----EADKDSWTQ 233 (474)
Q Consensus 209 ~L~qKQ~~LEERisQF----KaERDsWLk 233 (474)
.+..+..++++++.+| +.+|..|+.
T Consensus 233 ~le~~~~~~ee~~~~L~ekme~e~~~~~~ 261 (297)
T PF02841_consen 233 MLEQQERSYEEHIKQLKEKMEEEREQLLQ 261 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665 444555444
No 247
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=74.35 E-value=1.6e+02 Score=33.51 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=26.4
Q ss_pred cCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011943 60 ADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQ 106 (474)
Q Consensus 60 ~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~ 106 (474)
+-.-.+.|++-..++||-+ |-++ +..|--+|.-|-+-.-+||-
T Consensus 240 SEkvsKtga~g~vleEaK~---INkS-LsaLgnvI~aLa~g~~ship 282 (607)
T KOG0240|consen 240 SEKVSKTGAEGAVLEEAKN---INKS-LSALGNVINALAEGPKSHIP 282 (607)
T ss_pred ccccCCCCccchhHHHHhh---hhhh-HHHHHHHHHHHhcCCCCCCc
Confidence 3445677888777777732 1111 34566777778777666653
No 248
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=73.85 E-value=1.4e+02 Score=34.13 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHh
Q 011943 194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA 243 (474)
Q Consensus 194 a~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Is 243 (474)
.++..++..|+.+.......+..|++.+..|...|+.|+.-|+.-=-.+.
T Consensus 381 ~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA 430 (656)
T PRK06975 381 HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSA 430 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence 33444444454555555555677888898898889999999993333333
No 249
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.84 E-value=8.9 Score=35.68 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=7.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEE 261 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEe 261 (474)
.|..++.++..|..++..|+.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 250
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.17 E-value=1.4e+02 Score=32.11 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=5.1
Q ss_pred CCceeeccCC
Q 011943 409 SGEIVQIPLD 418 (474)
Q Consensus 409 ~~eiv~~~ld 418 (474)
.|.|..|.-|
T Consensus 393 ~G~V~~Is~~ 402 (457)
T TIGR01000 393 DGTITSISSA 402 (457)
T ss_pred EEEEEEEcCC
Confidence 4555555444
No 251
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.96 E-value=54 Score=34.23 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhh
Q 011943 311 IDKLITENIELVEKVNDLSVKLDRQS 336 (474)
Q Consensus 311 RK~LwrEnakL~ekvneL~~~l~~~~ 336 (474)
-++|.-+...|.+.|-.|..+|++..
T Consensus 221 LkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777775543
No 252
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.92 E-value=1.1e+02 Score=30.76 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
+.++.+.++.+...+-++...++..+..|+.........+..|+.++..++.+|..+......-..+...++.+.
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344447777777777778888888888888888877777777888888888888776655555555555554443
No 253
>PLN02939 transferase, transferring glycosyl groups
Probab=72.77 E-value=2.2e+02 Score=34.38 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhh-hh-hhh-hhhhhhhhH--------HH-----------H
Q 011943 251 QLRMQVVELEESRNNLLQEN----RQLKENVSSLRSQLSSD-ES-KKH-ATSEQKDFS--------TQ-----------I 304 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEi----q~LkeqIseL~~~iqtl-e~-~~~-~~~E~~dLk--------sQ-----------i 304 (474)
-++.+|+.+++.+.....++ +--...+.+++..+..+ ++ ++. +..-..++- -+ .
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~ 434 (977)
T PLN02939 355 LLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISN 434 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCCh
Confidence 46678887777776555444 44455666777666654 11 111 111111111 11 5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011943 305 EAAGALIDKLITENIELVE 323 (474)
Q Consensus 305 Eal~d~RK~LwrEnakL~e 323 (474)
+++..+|+..|+-+..+.+
T Consensus 435 ~~a~~lr~~~~~~~~~~~~ 453 (977)
T PLN02939 435 NDAKLLREMVWKRDGRIRE 453 (977)
T ss_pred hhHHHHHHHHHhhhhhHHH
Confidence 7788999999999876665
No 254
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=71.97 E-value=6.7 Score=41.21 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=2.2
Q ss_pred ceeeccCC
Q 011943 411 EIVQIPLD 418 (474)
Q Consensus 411 eiv~~~ld 418 (474)
-|.|.|-|
T Consensus 252 ~it~~p~D 259 (326)
T PF04582_consen 252 YITPPPSD 259 (326)
T ss_dssp GEES--S-
T ss_pred hccCCccc
Confidence 34444444
No 255
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=71.96 E-value=1.5e+02 Score=31.85 Aligned_cols=235 Identities=18% Similarity=0.162 Sum_probs=114.0
Q ss_pred HHHHHHhhhhhhhhhh---hHhhHHHHHHHHHHHHHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHHHhHHHHH
Q 011943 91 EETVKHLRNERESHIQ---KEATLEGTVQQLQNECDLYKEKVQATLEET---------IQQLQRQNDLRMQKEATLEETI 158 (474)
Q Consensus 91 eeti~~l~~e~d~~~~---~e~~~Ee~IkqLqeEi~~lkqkLE~lleEk---------ikQLe~E~~~~lQkeA~lE~kI 158 (474)
..|+++++.-+-.|.. -..-|++.|+.|+.-+...+-. ..+.-+ ..|++-..++.-+..|.=-.+-
T Consensus 55 ~~t~~kek~~~Q~l~kt~larsKLeelCRelQr~nk~~keE--~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n 132 (391)
T KOG1850|consen 55 DLTEKKEKRNNQILLKTELARSKLEELCRELQRANKQTKEE--ACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKN 132 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhh
Confidence 4788888777776633 3456899999999888776544 211111 1222222233333333333333
Q ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHhHhhhhhhhhhhh-
Q 011943 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES-AALNMKRASLEERLKLLEADKDSWTQMES- 236 (474)
Q Consensus 159 kdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~-~~L~qKQ~~LEERisQFKaERDsWLkkEI- 236 (474)
..|++.|.-..++--.|-++......-|+...++-. +..++.....-. ..|.+++..+-.+-.+|.-++|.+.+.=+
T Consensus 133 ~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e 211 (391)
T KOG1850|consen 133 DKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLE 211 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444443334434444444444444444444433 444443333222 24445555444455555444555433322
Q ss_pred chHHHHhhh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 237 VSKETIAGL----------------------------SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (474)
Q Consensus 237 sLke~Issl----------------------------~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle 288 (474)
.++..-..+ +.++..+...++.++.+--.|-..-..-...+=.+ -+
T Consensus 212 ~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~l------a~ 285 (391)
T KOG1850|consen 212 EMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQL------AE 285 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------HH
Confidence 222221111 22222223333333332222211111111111111 12
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 011943 289 SKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 334 (474)
Q Consensus 289 ~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~~ 334 (474)
++..-..+++.|.-+|..|.-+-.+|..+...|++++-.|.+.+.-
T Consensus 286 ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 286 EKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 2333356778888889999999999999999999999888654444
No 256
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=71.12 E-value=1.9e+02 Score=32.96 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 77 ERQHLLQREAMAILEETVKHLRNERE 102 (474)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d 102 (474)
.|.+..+++.....-+++++|.++..
T Consensus 347 ~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 347 KRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 67778888887788888888877743
No 257
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.10 E-value=54 Score=27.44 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=23.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
+..+.+..+......+..++..++..+..+..+...++..+.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556666666666666656555555555444
No 258
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.98 E-value=28 Score=29.89 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
+......++.++..|....+.+..+|..+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444444444444444444
No 259
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=70.98 E-value=1.2e+02 Score=30.33 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=23.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
.|.+.+..+..++.+|......+..+......++..+-..+.+
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 4444555555555556555555555555555555555554443
No 260
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.78 E-value=69 Score=27.63 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhh
Q 011943 196 LEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (474)
Q Consensus 196 LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaE 227 (474)
++.....+......++..-..+|+++.++..|
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~E 39 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAE 39 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555333
No 261
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.73 E-value=88 Score=28.83 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~ 290 (474)
.+..++..+.......+.+|..+...+..+-..++.+...+..|+..+..+|.+
T Consensus 72 ~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 72 RVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556666667777777788888888888888888888888888887777766443
No 262
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=70.38 E-value=44 Score=29.52 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHh-----------hhhhhhhhhh-chHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA-----------DKDSWTQMES-VSKETI 242 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKa-----------ERDsWLkkEI-sLke~I 242 (474)
+...+.+|+.++..+.++-..+...+..+..-...| ..|+. ..+.|+..++ ..++.+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l-----------~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~ 72 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETL-----------ETLKKADEGKETLVPLGAGVFVKAKVKDTDKVL 72 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEE
Confidence 445566666666666666666666666655444433 22211 1133344444 222222
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 243 ----------AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 243 ----------ssl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.+....+.-+...+..|++.+..+...+..++.++..+...++
T Consensus 73 v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 73 VDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred EEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777777777777776665554
No 263
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=70.33 E-value=1.5e+02 Score=31.35 Aligned_cols=139 Identities=16% Similarity=0.225 Sum_probs=76.0
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHH---------hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 011943 145 DLRMQKEATLEETIKQLRNQNDLHIQ---------REGGLEMNIANLQSEKEFWLQ-KEAALEQKISQLRDESAALNMKR 214 (474)
Q Consensus 145 ~~~lQkeA~lE~kIkdLq~~~~s~~Q---------kEa~LEe~IkqLq~EI~~llq-KEa~LeeeL~~L~~e~~~L~qKQ 214 (474)
...+.+.|.+|-+|..|+...+.... .-.-+-..|..|...+..+-. .-..++.+|..|..+...+..+.
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~ 284 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKR 284 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34688999999999999999998322 123355667777777666422 23444444444444443333322
Q ss_pred hh------HHHHHHHhHhhhhhh--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 215 AS------LEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 215 ~~------LEERisQFKaERDsW--LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.. .+.+|..|=.=-..| +..=+ .+=.++ ..+..|=.+....-..+..|+.....+...+..|...+.
T Consensus 285 ~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL----~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~ 360 (388)
T PF04912_consen 285 KEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERL----KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN 360 (388)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 122333220000111 11111 111122 234455666667777777777777788778887777777
Q ss_pred hh
Q 011943 286 SD 287 (474)
Q Consensus 286 tl 287 (474)
.+
T Consensus 361 ~v 362 (388)
T PF04912_consen 361 KV 362 (388)
T ss_pred HH
Confidence 66
No 264
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.31 E-value=30 Score=33.87 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=48.2
Q ss_pred hhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhhhhhhhhhhhhHHHHHH
Q 011943 235 ESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS--SLRSQLSSDESKKHATSEQKDFSTQIEA 306 (474)
Q Consensus 235 EIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs--eL~~~iqtle~~~~~~~E~~dLksQiEa 306 (474)
++...+.+.-+.-.|..|++++..|...++..+.||..|...+. +++..+++| ..+....+.++.-
T Consensus 74 ~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L------~kev~~~~erl~~ 141 (201)
T KOG4603|consen 74 DMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQEL------KKEVAGYRERLKN 141 (201)
T ss_pred cCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 45666777888888888888899988888888888888876655 777777766 4455544444433
No 265
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.21 E-value=87 Score=28.53 Aligned_cols=14 Identities=21% Similarity=0.295 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEF 188 (474)
Q Consensus 175 LEe~IkqLq~EI~~ 188 (474)
+..+|.+++.|+..
T Consensus 21 L~s~lr~~E~E~~~ 34 (120)
T PF12325_consen 21 LQSQLRRLEGELAS 34 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 266
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.19 E-value=52 Score=33.98 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=45.4
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011943 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLR---NERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEE 135 (474)
Q Consensus 59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~---~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleE 135 (474)
|-|++.|-| +.+-.+--=+..+ ++|.|..|+ .+.|-.|- --++.|..|... .+....++-+-.+
T Consensus 208 NG~~f~P~~-D~~~~dh~V~i~~--------lkeeia~Lkk~L~qkdq~il---eKdkqisnLKad-~e~~~~~ek~Hke 274 (305)
T KOG3990|consen 208 NGDGFPPFG-DRDPGDHMVKIQK--------LKEEIARLKKLLHQKDQLIL---EKDKQISNLKAD-KEYQKELEKKHKE 274 (305)
T ss_pred CCCcCCCCC-CCCCcchHHHHHH--------HHHHHHHHHHHHhhhHHHHH---hhhhhhhccCcc-hhHHHHHHHHHHH
Confidence 567788865 4444443333333 445555544 34333221 113455555443 2222445555666
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 011943 136 TIQQLQRQNDLRMQKEATLE 155 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE 155 (474)
++.||+....+.++..+.|.
T Consensus 275 ~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 275 RVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888777654
No 267
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.75 E-value=65 Score=31.13 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011943 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 193 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKE 193 (474)
.|..++.++..++.+++.....+ .-..+|...+.....++.+++.|+.+...... -.-+.|..++.++..+....
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r--~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGR--EESEEREELLEELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433322 22356777777777777777777777652221 23345555555555544444
Q ss_pred HHHHHHHHHH
Q 011943 194 AALEQKISQL 203 (474)
Q Consensus 194 a~LeeeL~~L 203 (474)
.....-|-.|
T Consensus 152 nrwTDNI~~l 161 (188)
T PF03962_consen 152 NRWTDNIFSL 161 (188)
T ss_pred HHHHhhHHHH
Confidence 4444444333
No 268
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.26 E-value=2.2e+02 Score=32.75 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH---HHHhhhhHHHHHHHHHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL---HIQREGGLEMNIANLQS 184 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s---~~QkEa~LEe~IkqLq~ 184 (474)
..++...+..+-++.-..+.. . ...++.-|+.+...+-++....|..+.+|+.+++. ..+.+..+ .++..|+.
T Consensus 243 a~ilN~la~~Yi~~~l~~k~~--~-a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l-~~~~~l~~ 318 (726)
T PRK09841 243 TRILNSIANNYLQQNIARQAA--Q-DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVL-EQIVNVDN 318 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHHHH
Confidence 344444444444442222222 2 23344778888888888888889999999888743 23333333 34555555
Q ss_pred HHHHHHHHHHHHHH
Q 011943 185 EKEFWLQKEAALEQ 198 (474)
Q Consensus 185 EI~~llqKEa~Lee 198 (474)
.+..+..+++.+..
T Consensus 319 ql~~l~~~~~~l~~ 332 (726)
T PRK09841 319 QLNELTFREAEISQ 332 (726)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444433
No 269
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=69.15 E-value=1.3e+02 Score=30.01 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 011943 115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (474)
Q Consensus 115 IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa 194 (474)
|.-|...+.++.-++-.... .|-.|.....+.--.....+..+..|+....+........+.+|.+..++++.+..+-.
T Consensus 12 IsLLKqQLke~q~E~~~K~~-Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDS-EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 33344444444444322222 24677777777777777777777777776666555555566667777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 011943 195 ALEQKISQLRDESAAL 210 (474)
Q Consensus 195 ~LeeeL~~L~~e~~~L 210 (474)
.++.++..|......+
T Consensus 91 ~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 91 QLEAELAELREELACA 106 (202)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 7777777776666544
No 270
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.99 E-value=88 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~q 212 (474)
..|++++..|+..+..+.+++..+..+|..|+.+....+.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666666777777777777777666654443
No 271
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.20 E-value=19 Score=32.12 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=24.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
..++..|+.++.++..+-..|-.||..|.+.+.++
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677777777777888887777666
No 272
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.98 E-value=24 Score=33.40 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=11.4
Q ss_pred HHHHhHhhhhhhhhh
Q 011943 220 RLKLLEADKDSWTQM 234 (474)
Q Consensus 220 RisQFKaERDsWLkk 234 (474)
..+.|.++||.||-.
T Consensus 94 ~~~~fraQRN~YIsG 108 (192)
T PF05529_consen 94 LAKKFRAQRNMYISG 108 (192)
T ss_pred HHHHHHHHHhHHHHH
Confidence 477888999998643
No 273
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=67.71 E-value=25 Score=35.43 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
.+.++..|.....++.+....|..+|..|+.|+..+...-+.+..+|++++..+..+|+---
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888999999999999999999999999999999888888876544
No 274
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.58 E-value=50 Score=32.62 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=28.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lk 274 (474)
.-...+.++..++..+..||..|+.=+.+-..+.++|+
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33446677888888888888888888887777777764
No 275
>PRK11281 hypothetical protein; Provisional
Probab=67.46 E-value=3e+02 Score=33.75 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
.-++.+...+...+..++.+++.|++.++.
T Consensus 223 ~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 223 DLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555553
No 276
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=67.20 E-value=2e+02 Score=31.70 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHH
Q 011943 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 259 (474)
Q Consensus 186 I~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~L 259 (474)
+..+++++..+...|.+++.+...+.++.+ +|..+......+++..+..+.+++..+.--+.|...|
T Consensus 199 lk~le~~~~~l~~~l~e~~~~~~~~~e~~~-------~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL 265 (447)
T KOG2751|consen 199 LEELEKEEAELDHQLKELEFKAERLNEEED-------QYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKL 265 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666655555555 4444444445555566666655555555444444443
No 277
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.44 E-value=2.5e+02 Score=32.51 Aligned_cols=190 Identities=15% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-------QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~-------QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~ 209 (474)
+.++...+..+++.+|..|.++.+|-...+-.. +.+..|-+.+..|...+..+.++-.+=..++..+......
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~ 135 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEK 135 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777888888888888888776543221 2222344444444444444333333333344444333332
Q ss_pred HHHhhhhHHHHHHHhHhhhhhhhhhhhchH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhh
Q 011943 210 LNMKRASLEERLKLLEADKDSWTQMESVSK-ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS-SLRSQLSSD 287 (474)
Q Consensus 210 L~qKQ~~LEERisQFKaERDsWLkkEIsLk-e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs-eL~~~iqtl 287 (474)
|-.--|+- ...-..++-.+-.|- +.+..++..+..|+.+....-+....+..+|..|-..+. .+...+..+
T Consensus 136 l~~~l~g~-------~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~ 208 (660)
T KOG4302|consen 136 LCEELGGP-------EDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDV 208 (660)
T ss_pred HHHHhcCC-------ccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhh
Confidence 22222200 000122333333222 444444444444444444444444444444444443333 122111011
Q ss_pred h----------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 011943 288 E----------SKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 333 (474)
Q Consensus 288 e----------~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~ 333 (474)
+ ..-...+.+..|...+..+.+.++.....=..|..++-+|--.+|
T Consensus 209 ~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ 264 (660)
T KOG4302|consen 209 EPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLD 264 (660)
T ss_pred hhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 011122455667777777777777777777777777777754443
No 278
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=66.03 E-value=63 Score=31.72 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ll 190 (474)
|+..++.|+.++..+++.++.....| -......-.+|+.|+.+-.....+-..++..+..|+.+|..+.
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~R-----------K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRER-----------KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 011943 191 QKEAALEQKISQ 202 (474)
Q Consensus 191 qKEa~LeeeL~~ 202 (474)
++....+....+
T Consensus 210 ~~~~~~~~~~~~ 221 (221)
T PF05700_consen 210 RKAAELKENQQQ 221 (221)
T ss_pred HHHHHHhccccC
No 279
>COG5293 Predicted ATPase [General function prediction only]
Probab=65.94 E-value=2.3e+02 Score=31.83 Aligned_cols=146 Identities=13% Similarity=0.126 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 011943 141 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI-----------SQLRDESAA 209 (474)
Q Consensus 141 e~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL-----------~~L~~e~~~ 209 (474)
++....-+++.+.+-.+-+ +=++...+.|.=+.+++.++.++++|..+..+--.+.... ----+....
T Consensus 227 ee~e~~e~~~~~~v~~k~~-tln~f~~~a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~ 305 (591)
T COG5293 227 EEIETTELRKQDEVNKKQA-TLNTFDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQV 305 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHH
Confidence 3333334444444433322 2345667788888899999999999988333322222111 111122333
Q ss_pred HHHhhhhH-H-------H---HHHHh-Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH---------HHH
Q 011943 210 LNMKRASL-E-------E---RLKLL-EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN---------NLL 267 (474)
Q Consensus 210 L~qKQ~~L-E-------E---RisQF-KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~---------sL~ 267 (474)
+|-.-|.+ . | -+.++ -++|-.+++.|| .++..+..++..+..|.++..+.=+-+. -+-
T Consensus 306 ~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ 385 (591)
T COG5293 306 LYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLC 385 (591)
T ss_pred HHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 44322211 0 1 22333 889999999999 9999999999999998888776544332 334
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 011943 268 QENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 268 eEiq~LkeqIseL~~~iqtl 287 (474)
+++-.++-.+.+++-++..+
T Consensus 386 ee~~~~~~elae~~~rie~l 405 (591)
T COG5293 386 EEIIALRGELAELEYRIEPL 405 (591)
T ss_pred HHHHHHhhhHHHHHHhhhHH
Confidence 44444444455555555433
No 280
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=65.92 E-value=3e+02 Score=33.15 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.8
Q ss_pred ceeecCCCCC
Q 011943 25 DVAVGADPNH 34 (474)
Q Consensus 25 ~~~~~~~~~~ 34 (474)
...|-|.+.|
T Consensus 505 PCPVCGS~~H 514 (1047)
T PRK10246 505 PCPLCGSTSH 514 (1047)
T ss_pred CcCCCCcccC
Confidence 3445555555
No 281
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.80 E-value=36 Score=27.70 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=26.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
+.+.|...+..+..+.......+.....|..++..|+..+.+++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445555666666666666666666666666666665554
No 282
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=65.62 E-value=1.5e+02 Score=29.60 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=73.6
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHh--
Q 011943 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE-RLKLL-- 224 (474)
Q Consensus 148 lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEE-RisQF-- 224 (474)
.+-.+.+|-.|+.|+............... .....+...-.+-+++|-.|+++...|.||- ||| -+.||
T Consensus 27 ~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~------~~~~~L~~~LrEkEErILaLEad~~kWEqkY--LEEs~mrq~a~ 98 (205)
T PF12240_consen 27 RRLRTRLERELESLRAQQRQGNSSGSSSPS------NNASNLKELLREKEERILALEADMTKWEQKY--LEESAMRQFAM 98 (205)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 345566777777776544332222222211 1122244444445556666666666666655 333 34444
Q ss_pred ------HhhhhhhhhhhhchHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 225 ------EADKDSWTQMESVSKETIAGL--SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 225 ------KaERDsWLkkEIsLke~Issl--~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
.++||.-+-.+..-...=.++ ..++-.-...+.+++..+..|..+|.+--..|..|+.+...
T Consensus 99 dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~ 168 (205)
T PF12240_consen 99 DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRK 168 (205)
T ss_pred HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345666333333111111223 56666777788888888888888888888888888877763
No 283
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=65.62 E-value=44 Score=34.06 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=6.0
Q ss_pred hhhhhHHHHHHHHH
Q 011943 296 EQKDFSTQIEAAGA 309 (474)
Q Consensus 296 E~~dLksQiEal~d 309 (474)
+..+|+.+.+++..
T Consensus 192 ev~~L~~r~~ELe~ 205 (290)
T COG4026 192 EVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHhcc
Confidence 34444444444433
No 284
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=65.61 E-value=1.1e+02 Score=28.13 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 299 DFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 299 dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
.+++.++.|.-.---+=.+..+++.+..+|
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 344444555444444444444455555454
No 285
>PF13166 AAA_13: AAA domain
Probab=65.30 E-value=2.4e+02 Score=31.71 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=11.0
Q ss_pred CCCcCCCchhHh-HHHHhhcccc
Q 011943 444 DAPLIGAPFRLV-SFVAKYVSGA 465 (474)
Q Consensus 444 dap~igapfrli-sfva~yvsga 465 (474)
.+..||-.-|-| -...+|.-|.
T Consensus 632 ~~~~~~N~~RriLE~yf~~~~~~ 654 (712)
T PF13166_consen 632 SAYNIPNVMRRILEAYFKFPGKI 654 (712)
T ss_pred hHHhhHHHhHHHHHHHHhhCCCC
Confidence 555666555532 2225664444
No 286
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.14 E-value=1.6e+02 Score=34.48 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHH
Q 011943 181 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRM 254 (474)
Q Consensus 181 qLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~ 254 (474)
.+..-|..+.++...++++...+...+..+......|+++...|+..|+.++.+.- ..+..+...+.+...+..
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~ 591 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK 591 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555566666666555555544443 444444444433333333
No 287
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.92 E-value=3e+02 Score=32.71 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=32.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------hhhhhhhhhhhhhhHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS------------DESKKHATSEQKDFSTQIEAAG 308 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt------------le~~~~~~~E~~dLksQiEal~ 308 (474)
.|-+++.-+..|+.|+.+.-+..+.|...+..|..-+..+..+-+. ++.++...-+...++-.++++.
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal 507 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEAL 507 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444444444444433333222221 1223444445555555555555
Q ss_pred HHHHH
Q 011943 309 ALIDK 313 (474)
Q Consensus 309 d~RK~ 313 (474)
...|.
T Consensus 508 ~~~k~ 512 (861)
T PF15254_consen 508 VNVKS 512 (861)
T ss_pred HHHHH
Confidence 54443
No 288
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=64.22 E-value=2.9e+02 Score=32.36 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHhHhh
Q 011943 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA-------ALNMKRASLEERLKLLEAD 227 (474)
Q Consensus 155 E~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~-------~L~qKQ~~LEERisQFKaE 227 (474)
|..-.+|+..+..|...-..|-. ..+.+...+..+...|+..|..++..+. .....-..|.+.+++-+.+
T Consensus 136 E~~q~ELee~q~~Hqeql~~Lt~---aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~ 212 (739)
T PF07111_consen 136 EGSQRELEEAQRLHQEQLSSLTQ---AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE 212 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344555544444443332211 1333344455555555555555555442 2222223334444444333
Q ss_pred hhhhhhhhh-chHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhhhh
Q 011943 228 KDSWTQMES-VSKETIAGL----------SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS--QLSSDESKKHAT 294 (474)
Q Consensus 228 RDsWLkkEI-sLke~Issl----------~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~--~iqtle~~~~~~ 294 (474)
-+.-.- -+ .|+.+|..+ +-+-..|..-|.+|+++.+.|-.++.-|...+.+|.. .++.-+..++..
T Consensus 213 le~q~t-lv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvq 291 (739)
T PF07111_consen 213 LEAQVT-LVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQ 291 (739)
T ss_pred HHHHHH-HHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 222111 12 455555322 2344678888999999999999998888888887633 333221111111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 295 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 295 ~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
--+-|......+|..-=..||+ ||=.|+|+|
T Consensus 292 -p~d~Le~e~~~K~q~LL~~WRE------KVFaLmVQL 322 (739)
T PF07111_consen 292 -PSDPLEPEFSRKCQQLLSRWRE------KVFALMVQL 322 (739)
T ss_pred -CCCCCCchhHHHHHHHHHHHHH------HHHHHHHHh
Confidence 1123334445555555567776 444454444
No 289
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=63.96 E-value=1.5e+02 Score=28.95 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011943 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (474)
Q Consensus 140 Le~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqK 192 (474)
+++=...+=|-+-.++..|.+.+...-.....+..++.++..++..+..|..+
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555555555555555555555555555555555555443
No 290
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=63.66 E-value=2.4e+02 Score=31.18 Aligned_cols=168 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHH-HHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMN-IANLQSEKEFW 189 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~-IkqLq~EI~~l 189 (474)
|++.|+.|+.+++.-.-.+++..-.--.+-+--....--..+.-|--.+.+.+.+...+..-...+++ |..|+.|++-+
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrL 375 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRL 375 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHH----------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHH
Q 011943 190 LQKE----------------AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQL 252 (474)
Q Consensus 190 lqKE----------------a~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sL 252 (474)
+.+| .+|+.+|.+.++-++....=..---+.+.-++ .|. .|.+.-+..=-+|..|
T Consensus 376 LAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvq--------RELeVLSEQYSQKCLEnahL 447 (593)
T KOG4807|consen 376 LAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQ--------RELEVLSEQYSQKCLENAHL 447 (593)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 253 q~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
-.....-+..+-.+..++|.|..---+|.+++..
T Consensus 448 aqalEaerqaLRqCQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 448 AQALEAERQALRQCQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
No 291
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.55 E-value=2.2e+02 Score=30.73 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=38.1
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.++ -|..-+..++.++..|+.++..+...+.+.+++.++|...+++---..+
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 344 6677777788888888888888888888888888888777765443333
No 292
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=63.16 E-value=1.3e+02 Score=35.14 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 236 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI 236 (474)
+..-|..+..+...++++...+...+..+......|+++...|+..|+.++.+--
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~ 567 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELE 567 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555566677777777666666654433
No 293
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.46 E-value=2.5e+02 Score=31.09 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=11.0
Q ss_pred HhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 011943 96 HLRNERESHIQKEATLEGTVQQLQNEC 122 (474)
Q Consensus 96 ~l~~e~d~~~~~e~~~Ee~IkqLqeEi 122 (474)
.|+...+..|...+-++.+++++.+.+
T Consensus 303 qlqrdlE~~~~~r~ele~~~~qs~ed~ 329 (542)
T KOG0993|consen 303 QLQRDLEELIETRAELEHTEQQSQEDI 329 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333333333444444444444444333
No 294
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=62.20 E-value=2.1e+02 Score=31.56 Aligned_cols=74 Identities=27% Similarity=0.307 Sum_probs=46.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITEN 318 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEn 318 (474)
-..+..+..+...|-.++.+++.....+.++-.+.-.......-+.=.. ..++..|..+++-....-++||..|
T Consensus 196 ~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~------~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 196 LQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEH------QDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------cchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444455556666666666666666666555544444333322233 5677788888888888888998875
No 295
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.12 E-value=1.3e+02 Score=27.71 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 141 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 204 (474)
Q Consensus 141 e~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~ 204 (474)
...++.+.+++..+..++.+...-...-...-..+...+.++..+++....-...|+.+|..++
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555566666666666666665555555555666677777777776666666766666654
No 296
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.11 E-value=2.9e+02 Score=31.63 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 151 eA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
++..|..+.+|++.-.+....-..+..+|+.+.--+++-..+=..|+.+|.+.+...+
T Consensus 354 l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~d 411 (654)
T KOG4809|consen 354 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIED 411 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445566666666666666666666666777766666666666667777766655544
No 297
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=61.89 E-value=2e+02 Score=29.79 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH--HhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 139 QLQRQNDLRMQKEATLEETIKQL--RNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (474)
Q Consensus 139 QLe~E~~~~lQkeA~lE~kIkdL--q~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~ 216 (474)
.|-.++...-+.....+-+|.-+ ..--++..| ...+-.+.+.|..|+..|.++.-.+ -.+ +....-..|
T Consensus 20 ~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~q-l~ll~~~~k~L~aE~~qwqk~~pei----i~~---n~~VL~~lg- 90 (268)
T PF11802_consen 20 ELIKECEELWKDMEECQNKLSLIGTETLTDSDAQ-LSLLMMRVKCLTAELEQWQKRTPEI----IPL---NPEVLLTLG- 90 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHhcCCCc----CCC---CHHHHHHHH-
Confidence 34455666666666565566444 222223322 2356677777888888887766521 111 111111223
Q ss_pred HHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011943 217 LEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATS 295 (474)
Q Consensus 217 LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~ 295 (474)
..|+++-+ .|+..+++.+..+..|.+....-+.-++...+=...|.....++....-++.+ ..
T Consensus 91 ------------keelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se----~r 154 (268)
T PF11802_consen 91 ------------KEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE----SR 154 (268)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch----HH
Confidence 44566777 88888888888888888887776655554444444444444444444443311 12
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 296 EQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 296 E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
-+.+++.++..+....+.|.+.=..+.+
T Consensus 155 v~~el~~K~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 155 VFQELKTKIEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467777777777777777776444443
No 298
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.86 E-value=61 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 305 EAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 305 Eal~d~RK~LwrEnakL~ekvneL 328 (474)
-.+...++.|--+=.+|..+..+|
T Consensus 180 s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 180 SRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHh
Confidence 333444444444444454444444
No 299
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.55 E-value=36 Score=30.62 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
..+..+..++..+..++..|+..+..+.+||..|+-.-.-|+.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666443333333333
No 300
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.45 E-value=1.2e+02 Score=26.57 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
..++.++..++..|..+.++...++.++..++.....+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666666666666667777777777777776665443
No 301
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.45 E-value=1.2e+02 Score=26.57 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
....|...+..++..+..+......++.++.+++..++
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555444
No 302
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.30 E-value=2.5e+02 Score=32.44 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=4.0
Q ss_pred ccccchHH
Q 011943 68 AESANLAE 75 (474)
Q Consensus 68 ~~~~~~~e 75 (474)
|+.+.|+|
T Consensus 318 P~~dLsve 325 (652)
T COG2433 318 PDRDLSVE 325 (652)
T ss_pred CcccCCHH
Confidence 44455554
No 303
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.23 E-value=2.1e+02 Score=29.45 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=32.6
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
....+..+--.+..+..++..-.+.+..+.++|..|+..|..|.......
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~ 226 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDP 226 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 33344444456667777777777777777777777777777776555533
No 304
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.11 E-value=68 Score=26.51 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhh
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 172 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkE 172 (474)
.+|+.+|..+.+..+.+...-..|.++++...++-
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444443
No 305
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=60.03 E-value=2.7e+02 Score=30.58 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011943 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVS-SLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKL 314 (474)
Q Consensus 246 ~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs-eL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~L 314 (474)
...+..+..++..+..++..+...+...+-... -|+..++.+ -.|..-|+.|-+-+.|+++.|
T Consensus 245 ~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V------~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 245 PKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKV------CEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555 677888877 566666677756566666544
No 306
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.01 E-value=1.6e+02 Score=28.01 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=42.6
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhh
Q 011943 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETI----QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 172 (474)
Q Consensus 97 l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEki----kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkE 172 (474)
+-..|..|--....|.....+|..+...-++. .-..+.++ .+++.++.++..+++.++...+.|.....+....-
T Consensus 41 ~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~-r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 41 LASRNQEHEVELELLREDNEQLETQYEREKEL-RKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 33444444444445555555555433322211 11111111 34555556666666666666666665544444433
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQKE 193 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKE 193 (474)
..++++-.+|..+...+..++
T Consensus 120 ~rlee~e~~l~~e~~~l~er~ 140 (158)
T PF09744_consen 120 SRLEEREAELKKEYNRLHERE 140 (158)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 444444444433333333333
No 307
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=59.72 E-value=2.6e+02 Score=30.31 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-HhhhhhhhhhhhchHHHHhhh
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMESVSKETIAGL 245 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF-KaERDsWLkkEIsLke~Issl 245 (474)
+.++......++..++.+...+.+....|+.++..+ ...++.|+.-|+.-=-.+.+.
T Consensus 90 l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA~q 147 (390)
T PRK10920 90 LEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFLVKLAGR 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Confidence 334444555555666666666666666777888888 456699999999333333333
No 308
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=59.63 E-value=3.1e+02 Score=31.27 Aligned_cols=187 Identities=17% Similarity=0.224 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHH----HHhHHHHHHHHHhhhhHHHHh---hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQK----EATLEETIKQLRNQNDLHIQR---EGGLEMNIANL---QSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 138 kQLe~E~~~~lQk----eA~lE~kIkdLq~~~~s~~Qk---Ea~LEe~IkqL---q~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
+.|+.+.+.+++| +..++.--.+|++.+ +.-|+ ++.|-.+|+.| +..|..|+.....=..
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK--------- 73 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDK--------- 73 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccH---------
Confidence 4456666666664 345666666777666 22222 34455555554 4455558766543222
Q ss_pred HHHHHhhhhHHHHHHHh-Hhhhhhhh---hhhh-chHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 208 AALNMKRASLEERLKLL-EADKDSWT---QMES-VSKETI----AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 208 ~~L~qKQ~~LEERisQF-KaERDsWL---kkEI-sLke~I----ssl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
+.|.-.....|-+..+| --||..=+ .+|- +....| .....+..=|...|-+|++.+.+++. +.+...+.
T Consensus 74 ~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea--~~~e~~~e 151 (575)
T KOG2150|consen 74 DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEA--EELERFIE 151 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 33444445566677777 23333311 1111 111111 23333444455555555555555544 44444444
Q ss_pred HHHhhhhhhhhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHhhhhhhhh
Q 011943 279 SLRSQLSSDESKKHATSEQKD-FSTQIEAAGALIDKLITENIE--LVEKVNDLSVKLDRQSVA 338 (474)
Q Consensus 279 eL~~~iqtle~~~~~~~E~~d-LksQiEal~d~RK~LwrEnak--L~ekvneL~~~l~~~~~~ 338 (474)
.++-.++.+|.--.+. .+.+ ....++..+|-..-....|.+ +. +.-.||+.|++...+
T Consensus 152 rh~~H~~~lEliLr~L-~N~E~~pe~v~~vqDdi~yyVe~nqdpdF~-e~e~iYd~l~le~~e 212 (575)
T KOG2150|consen 152 RHRWHQQKLELILRLL-DNDELDPEAVNKVQDDITYYVESNQDPDFL-EDETIYDDLNLEELE 212 (575)
T ss_pred HHHHHHHHHHHHHHHh-hccccCHHHHhhhhHHHHHHHHhccCchhh-hhhHHhhccCchhhh
Confidence 4433333332100000 1222 233466777776666666543 44 366777777666554
No 309
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.53 E-value=84 Score=30.37 Aligned_cols=49 Identities=29% Similarity=0.451 Sum_probs=22.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELE------ESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LE------esl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.|+..+..++..+..|...+..++ .++..+..+.++|...+..|...++
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333 2333445555555555555555555
No 310
>PRK04406 hypothetical protein; Provisional
Probab=58.63 E-value=71 Score=26.78 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
+++|..+..-|..+..++ +.++++|.+|.......-+.+..+...++.|.+
T Consensus 3 ~~~~~~le~Ri~~LE~~l-AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 3 EKTIEQLEERINDLECQL-AFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555553 445555555555444444444444444444433
No 311
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=58.57 E-value=98 Score=25.82 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
++..+...+..+..++.++..+..+.+.+..+.+.+.+.+..
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444443
No 312
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.51 E-value=3.6e+02 Score=31.57 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=23.7
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 232 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
++.++ .+...+...-..+....+++..+..++.++....++..+..
T Consensus 184 ~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~ 230 (716)
T KOG4593|consen 184 LHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELE 230 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444 45555555555555555555555555555555544443333
No 313
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.48 E-value=36 Score=30.66 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=23.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
..++..|+.++.++..+--.|-.||..|.+.+.++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666667777777777766665
No 314
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.32 E-value=1.8e+02 Score=28.08 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~ 201 (474)
+|..|+.+...+-...+.++.++..++....- ......+..+.+++.+.+.-..++.+|.
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e------~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKREEE------LRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444332211 2333445566666666666666665554
No 315
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.23 E-value=1.1e+02 Score=25.55 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=26.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 170 QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
.-...|++.+..++.++..+..+...+..++..++..+.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447777777777777777777777777777755543
No 316
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=58.14 E-value=1.2e+02 Score=26.09 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=26.1
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
.+...+..+..++..-..+.-.+......+..++..|+.+++.
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666666666555553
No 317
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.14 E-value=4.3e+02 Score=32.34 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHhhhhHHHHhhhhHHH
Q 011943 113 GTVQQLQNECDLYKEKVQATL--------EETIQQLQRQNDLRMQKEATLEETI-------KQLRNQNDLHIQREGGLEM 177 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkLE~ll--------eEkikQLe~E~~~~lQkeA~lE~kI-------kdLq~~~~s~~QkEa~LEe 177 (474)
..+++|-.||..+++.|-++- +++..|.+.++.....++-.++.+| ++|++..-+...-...|-+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345667777777777765532 3444344444444444444444433 3333333333333335666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 178 NIANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 178 ~IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
++..++..+..-.+....++.++.++...
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666555
No 318
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.00 E-value=84 Score=34.86 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=13.6
Q ss_pred CCCCCCCCCCcccccccccc--cccccccc
Q 011943 357 TEPMSESSDNMSSLNNRLET--QGVVAVKE 384 (474)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~e~--~~~~~~~~ 384 (474)
+.|.|-.|+|+.-..-..=| +..|||.+
T Consensus 232 ~~pvYTiP~NSTL~GS~aMTALIGRVPIdG 261 (472)
T TIGR03752 232 ARPVYTIPENSTLMGSVAMTALIGRVPIDG 261 (472)
T ss_pred cceeEecCCCCchhhhHHHHHHhcccccCC
Confidence 34566666665443322211 34566655
No 319
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.51 E-value=2.6e+02 Score=29.72 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=70.3
Q ss_pred Hhhhhhhhhhhh---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------
Q 011943 225 EADKDSWTQMES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS---------------- 285 (474)
Q Consensus 225 KaERDsWLkkEI---sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq---------------- 285 (474)
+.-.|.|-+... .+...|.........|+.+......++..++..|..|...|..-..-++
T Consensus 233 ~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vE 312 (384)
T PF03148_consen 233 QTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVE 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchH
Confidence 444444444433 6777777777777777777777777777777777766666654333332
Q ss_pred --------hh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhH
Q 011943 286 --------SD-ESKKHATSEQKDFSTQIEAAGALIDKLITENIELVE----KVNDLSV 330 (474)
Q Consensus 286 --------tl-e~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~e----kvneL~~ 330 (474)
.| .+...+...+..|+.++.++.+....|.+--..|-+ |-|.|+|
T Consensus 313 lcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~i 370 (384)
T PF03148_consen 313 LCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFI 370 (384)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 557777888888888888888888888877555554 6677764
No 320
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=57.11 E-value=3.6e+02 Score=31.22 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 297 QKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 297 ~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
...|..+. +-...|++||-+=..|+=
T Consensus 289 ~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 289 EENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 44445555 556888888888777764
No 321
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=57.06 E-value=15 Score=38.73 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.|+.+...+..+...+..+...++++...+..++..|..+...+.
T Consensus 57 ~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs 101 (326)
T PF04582_consen 57 TISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVS 101 (326)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 333333333333333333333444444444444443333333333
No 322
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.90 E-value=1.7e+02 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.423 Sum_probs=20.6
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 276 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lkeq 276 (474)
.++..|......+..++.++..++.....+...+..|+.+
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~ 134 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555554433
No 323
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.85 E-value=83 Score=34.89 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.+++.|-.+++.++.++..+..+|+.|+++-+.|+.+.+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555555555555555555554444443
No 324
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.67 E-value=1.5e+02 Score=26.63 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (474)
Q Consensus 169 ~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qK 213 (474)
......++.++..|...+..+.+....+..++..+......+.++
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555544443
No 325
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=55.78 E-value=3.3e+02 Score=30.36 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 011943 218 EERLKLL 224 (474)
Q Consensus 218 EERisQF 224 (474)
.|++..|
T Consensus 146 ~e~l~~f 152 (475)
T PRK10361 146 REQLDGF 152 (475)
T ss_pred HHHHHHH
Confidence 3444444
No 326
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.76 E-value=1.3e+02 Score=32.80 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=16.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
..........+..+..+...++..+..+.+++..|+.++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444433
No 327
>PRK04406 hypothetical protein; Provisional
Probab=55.45 E-value=60 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+...+..|+..+.-.+..|++|...|...
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Q 37 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQ 37 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333333
No 328
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=55.25 E-value=3.7e+02 Score=30.67 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEF---WLQKEAALEQKISQLRDES 207 (474)
Q Consensus 175 LEe~IkqLq~EI~~---llqKEa~LeeeL~~L~~e~ 207 (474)
.++.|..++..|++ ++..|..-+.-+.......
T Consensus 279 aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l 314 (570)
T COG4477 279 AEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL 314 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 34556666666666 4555555554444444333
No 329
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.60 E-value=1.4e+02 Score=32.63 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=7.3
Q ss_pred CCCCcCCCchhH
Q 011943 443 TDAPLIGAPFRL 454 (474)
Q Consensus 443 ~dap~igapfrl 454 (474)
++.||...|-++
T Consensus 377 s~~~Ll~G~~~v 388 (525)
T TIGR02231 377 SDFPLLPGEVNI 388 (525)
T ss_pred CCCcccCCceEE
Confidence 466677666444
No 330
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.24 E-value=2.8e+02 Score=29.10 Aligned_cols=102 Identities=21% Similarity=0.149 Sum_probs=56.8
Q ss_pred hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhhhh----------
Q 011943 231 WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD----ESKKHATS---------- 295 (474)
Q Consensus 231 WLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl----e~~~~~~~---------- 295 (474)
-|++|. .|-+....+......|.++...-+..++.++......+.+|..|...+.-+ |-.+....
T Consensus 64 ~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~s 143 (307)
T PF10481_consen 64 ALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCS 143 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccC
Confidence 355666 666666666666666666666655566666665555555555555555422 11111110
Q ss_pred ------------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 296 ------------EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 296 ------------E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
...-..+++++|...-.+=..|--.|...|--|.++.
T Consensus 144 tpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 144 TPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred CchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 0112235677777776666666666666666666554
No 331
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.76 E-value=1.5e+02 Score=25.64 Aligned_cols=29 Identities=10% Similarity=0.334 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 178 NIANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 178 ~IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
++..|+..+..+.++-..+...+.+...-
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v 35 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKA 35 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 332
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.68 E-value=34 Score=26.10 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=33.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 293 ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 293 ~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
+.....-|++.++.+.+.-..|-.|+..|...|..|.-+|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556788999999999999999999999999888886554
No 333
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=53.44 E-value=74 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=20.1
Q ss_pred hHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHH
Q 011943 216 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT 250 (474)
Q Consensus 216 ~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~ 250 (474)
.|+-.+.+|..+|..|--.=-.|+.+|+.|+-+..
T Consensus 8 fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r 42 (134)
T PF08232_consen 8 FLQTEWHRFERDRNQWEIERAEMKARIAFLEGERR 42 (134)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35568888899999984332244444433333333
No 334
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.61 E-value=3.4e+02 Score=29.54 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 011943 115 VQQLQNECDLYKEKVQATLEETIQQLQR 142 (474)
Q Consensus 115 IkqLqeEi~~lkqkLE~lleEkikQLe~ 142 (474)
+..+.+++.+++.. ...+++.|..|+.
T Consensus 214 l~~~~~el~eik~~-~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 214 LQKILEELREIKES-QSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444444444444 2334444444444
No 335
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=52.54 E-value=2.1e+02 Score=27.19 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR 253 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq 253 (474)
=+.-+-+|+.+...+.++++.+..+++.|.. .|+..+. +--..-+.++ .+-++++-+.-.+..|.
T Consensus 21 Ce~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~---LL~~~r~-----------~~~vl~r~~L~allRkqAVvRrqi~eL~ 86 (147)
T PF02090_consen 21 CEQALLQLQREEQKLDAEEEAIEEQRAGLQS---LLDTQRA-----------EGCVLSREELYALLRKQAVVRRQIQELN 86 (147)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHhH-----------ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888887743 3333333 3345566778 88888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
.+...+++..-.+..+.+.+.++..-|
T Consensus 87 lq~~~i~ekR~~l~ke~~~~~~~r~~w 113 (147)
T PF02090_consen 87 LQEQQIQEKRRQLEKEKQEQQEQRKHW 113 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889998888888988888888877766
No 336
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=52.10 E-value=5.8e+02 Score=32.03 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=13.4
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011943 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEE 135 (474)
Q Consensus 105 ~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleE 135 (474)
|+...=+....+.++.+...+...++.+..+
T Consensus 818 i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~ 848 (1294)
T KOG0962|consen 818 IRTVDELRKEKSKKQESLDKLRKEIECLQKE 848 (1294)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333
No 337
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=51.75 E-value=3.8e+02 Score=29.80 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=14.7
Q ss_pred cCccCCCCCcCCCchhHhHHHHhh
Q 011943 438 AAVPLTDAPLIGAPFRLVSFVAKY 461 (474)
Q Consensus 438 ~~vp~~dap~igapfrlisfva~y 461 (474)
..+.|.|-|.-|-..+-.-.|+++
T Consensus 463 ~~~lilDEp~~gld~~~~~~~~~~ 486 (563)
T TIGR00634 463 VTTLIFDEVDVGVSGETAQAIAKK 486 (563)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH
Confidence 356777888777665544444443
No 338
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.69 E-value=2.9e+02 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 134 eEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
.+.+.-++.+...+-++....|..+.+|+++++.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455778888888888899999999999988765
No 339
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=51.36 E-value=4e+02 Score=29.93 Aligned_cols=67 Identities=12% Similarity=-0.003 Sum_probs=30.9
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEF----WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~----llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
+.+++-+......--+.+..++-.|+++|.. -...+.....++..++.+...+..--+-|++.+.-|
T Consensus 311 ~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~ 381 (554)
T KOG4677|consen 311 FEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECF 381 (554)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHH
Confidence 3334444444444444455555555555553 223344444445555555544444444455555555
No 340
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.24 E-value=4e+02 Score=29.89 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 298 KDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 298 ~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
.+.+.-|....+.++.|-.+...+.+++|-=+
T Consensus 399 RKq~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 399 RKQEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34445566677777777777766666665544
No 341
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=50.85 E-value=5.8e+02 Score=31.68 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011943 219 ERLKLLEADKDSWTQMES-VSKETIAGLSVDIT--------QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (474)
Q Consensus 219 ERisQFKaERDsWLkkEI-sLke~Issl~~~~~--------sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~ 289 (474)
||+.+.-+.+|-+--.-+ .|+..+...+.-+. ....|+. -.....-..+++.=.+.+..|...+...+.
T Consensus 1222 ErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~ 1299 (1439)
T PF12252_consen 1222 ERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTFEEQEKEIQQNLQLLDKLEKTLDDSDT 1299 (1439)
T ss_pred HHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHHHHHhcchHH
Confidence 366666555555555666 66666655443332 1111221 122233345555555566666666665555
Q ss_pred hhhhhhhhhhhHH
Q 011943 290 KKHATSEQKDFST 302 (474)
Q Consensus 290 ~~~~~~E~~dLks 302 (474)
.+..+.++-.|+.
T Consensus 1300 a~Kqk~di~kl~~ 1312 (1439)
T PF12252_consen 1300 AQKQKEDIVKLND 1312 (1439)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 342
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.84 E-value=4.9e+02 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 011943 302 TQIEAAGALIDKLITENIELVEK 324 (474)
Q Consensus 302 sQiEal~d~RK~LwrEnakL~ek 324 (474)
+-+..+...+++||..+.+|..-
T Consensus 623 ~v~~~~~~~~~~l~~~~e~l~~~ 645 (809)
T KOG0247|consen 623 SVAAKLLELQSKLWFKDEKLKHL 645 (809)
T ss_pred hHHHHHHHHHHHhcccHHHHHHh
Confidence 34566777899999999999863
No 343
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.83 E-value=3.1e+02 Score=28.51 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=42.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 165 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 165 ~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
.......-..+.+++++.+.+...+..+...++.+|..|+.+...+...-+++.-|..+|
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344456677777778888888888888888888888887777666666677777
No 344
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=50.81 E-value=1.7e+02 Score=25.63 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
+.+++.+|+.+++.+.+.-..+...+.++..-...|
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777776666666666666665555444
No 345
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.35 E-value=1.6e+02 Score=29.58 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~i 284 (474)
.|+..+.........++.++..|+...+++..|...|.+.-+.|++++
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555544444444433
No 346
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.95 E-value=1.9e+02 Score=25.92 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH---------------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDL---------------HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ 202 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s---------------~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~ 202 (474)
..+...+..+-......+..+++|..--+. .......+.+++.-+..+|..+.+++..++.++.+
T Consensus 24 ~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e 103 (121)
T PRK09343 24 ERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKE 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555556666666553322 22334457778888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 011943 203 LRDESAALNMK 213 (474)
Q Consensus 203 L~~e~~~L~qK 213 (474)
++.....+.++
T Consensus 104 ~q~~l~~ll~~ 114 (121)
T PRK09343 104 LQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHh
Confidence 88888776654
No 347
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.84 E-value=1.8e+02 Score=25.47 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 011943 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-WLQKEAALEQKISQLRDESAALN 211 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~-llqKEa~LeeeL~~L~~e~~~L~ 211 (474)
+..++...+.+-...++++|. +.|.+.-.+++.+++-|+...+. |.++...+..++..+..++..|.
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~------------eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVAR------------ELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 011943 212 MK 213 (474)
Q Consensus 212 qK 213 (474)
.+
T Consensus 70 ~~ 71 (87)
T PF12709_consen 70 KK 71 (87)
T ss_pred HH
No 348
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.51 E-value=4.6e+02 Score=30.12 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQLSSD-ESKKHATSEQKDFSTQIEAAGALIDKLITE 317 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~iqtl-e~~~~~~~E~~dLksQiEal~d~RK~LwrE 317 (474)
++.++.+...-|.+-+.-..+.+..+.+ |--+||..-...-+.++++.....+.+|.-
T Consensus 517 eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~~a~k~ 575 (654)
T KOG4809|consen 517 EELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKKPAWKP 575 (654)
T ss_pred HHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3444444444444444444444444444 335666665666667788888888888854
No 349
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.37 E-value=49 Score=34.40 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=68.6
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 011943 232 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGAL 310 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~ 310 (474)
+.+++ .++..+...+..+...+.+....+..+..+...+..|+.+......+...+ ..++.....+++.+..+
T Consensus 212 v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l------~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 212 VNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL------EEEIEETERKLERAEKL 285 (344)
T ss_dssp HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhccHHHH
Confidence 45666 777777777777777777777777777777777777777776665555555 66666667777777777
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhhhhhcccc
Q 011943 311 IDKLITENIELVEKVNDLSVKLDRQSVAAGLSS 343 (474)
Q Consensus 311 RK~LwrEnakL~ekvneL~~~l~~~~~~~~~ss 343 (474)
...|=.|...-.+.+..|.-.+...-...-+++
T Consensus 286 i~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaa 318 (344)
T PF12777_consen 286 ISGLSGEKERWSEQIEELEEQLKNLVGDSLLAA 318 (344)
T ss_dssp HHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 777766655555555555444433334444444
No 350
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=49.21 E-value=2.3e+02 Score=26.72 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHh-Hhhhhhhhhhhh-chHHHH-----
Q 011943 171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE-RLKLL-EADKDSWTQMES-VSKETI----- 242 (474)
Q Consensus 171 kEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEE-RisQF-KaERDsWLkkEI-sLke~I----- 242 (474)
.-..+.+++..|+..++.+.+....+...+.++..-...|.-=.+ .++ + .-| =-+...|++-.+ ..++.|
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~-~~~g~-E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKG-AGEGK-EVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCc-eEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 334577888888888888888888888888888776665521111 000 0 000 112345555555 323333
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 243 -----AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 243 -----ssl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.+....+..|...+..|++.+..+...++.|-..+..+....+
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444444444333
No 351
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.16 E-value=69 Score=24.46 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
+..+...|...-..|......|..+++.|+.++..|...++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556667777777777777777777777777776655443
No 352
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=49.16 E-value=2.5e+02 Score=26.89 Aligned_cols=84 Identities=8% Similarity=0.086 Sum_probs=62.4
Q ss_pred HHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011943 217 LEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATS 295 (474)
Q Consensus 217 LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~ 295 (474)
-..++..+-.+...|.-.++ .+.....-+......+..++..+...+.....++......|..+..++.-+ ..
T Consensus 55 ~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~------~e 128 (158)
T PF09486_consen 55 HDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVC------RE 128 (158)
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH------HH
Confidence 33477777667777877888 888888888888888888888888888888888888888888887777776 54
Q ss_pred hhhhhHHHHHH
Q 011943 296 EQKDFSTQIEA 306 (474)
Q Consensus 296 E~~dLksQiEa 306 (474)
.+..|+...+.
T Consensus 129 r~~~l~r~~ea 139 (158)
T PF09486_consen 129 RIDRLRRAAEA 139 (158)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 353
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.57 E-value=96 Score=26.55 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011943 254 MQVVELEESRNNLLQENRQLKEN 276 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~Lkeq 276 (474)
.++..|+.....+.+++..|+.+
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 354
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=48.33 E-value=43 Score=35.52 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHH
Q 011943 146 LRMQKEATLEETIKQLRNQNDLH 168 (474)
Q Consensus 146 ~~lQkeA~lE~kIkdLq~~~~s~ 168 (474)
.+++....+...+++|+.+++..
T Consensus 95 k~~k~l~el~~~~~elkkEie~I 117 (370)
T PF02994_consen 95 KSIKELNELKKRIKELKKEIENI 117 (370)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555554443
No 355
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=48.27 E-value=92 Score=31.42 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=17.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
.|...|..++.++..|+-+|..+...++.+.+.-.++-..|
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333333
No 356
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.17 E-value=2.5e+02 Score=26.59 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES- 236 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI- 236 (474)
++.|+...=+..|.++....-..-+..-++...+.... +..+....-...+-.++-. .|+
T Consensus 8 v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vt-k~d~e~~~~~~~a~~~eLr------------------~el~ 68 (177)
T PF07798_consen 8 VKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVT-KSDLENQEYLFKAAIAELR------------------SELQ 68 (177)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH------------------HHHH
Q ss_pred -chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhhhhhhhhhhhhhhhhhHHH
Q 011943 237 -VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ------------LKENVSSLRSQLSSDESKKHATSEQKDFSTQ 303 (474)
Q Consensus 237 -sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~------------LkeqIseL~~~iqtle~~~~~~~E~~dLksQ 303 (474)
.-+..+..++.....|+.++..++.++..--...+. .++....+..+++.+ +.....++..|+.+
T Consensus 69 ~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~--~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 69 NSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQEL--NNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred HHHH
Q 011943 304 IEAA 307 (474)
Q Consensus 304 iEal 307 (474)
++.+
T Consensus 147 iE~~ 150 (177)
T PF07798_consen 147 IESL 150 (177)
T ss_pred HHHH
No 357
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=47.57 E-value=4.7e+02 Score=29.67 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011943 114 TVQQLQNECDLYKEKVQA 131 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~ 131 (474)
.|..|+..+-.+.+-|++
T Consensus 194 l~~~lqk~f~alEk~mka 211 (531)
T PF15450_consen 194 LCSFLQKSFLALEKRMKA 211 (531)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 358
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=47.32 E-value=4.5e+02 Score=29.41 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=50.2
Q ss_pred HHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhh
Q 011943 95 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG 174 (474)
Q Consensus 95 ~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~ 174 (474)
|.+..=..--|.+|.-||+.|.+=-.+|..|.+=++-...++ +++..+- -..|.+|..|..-.+.-.-.+.-
T Consensus 101 KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK~Er------E~naiI~--Q~re~k~~rleslmdg~l~~~e~ 172 (488)
T PF06548_consen 101 KAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYKHER------ECNAIIA--QTREDKILRLESLMDGVLPTEEF 172 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc------hhhHHHH--HhhhhHHHHHHHhhccccchHHH
Confidence 444444455689999999999999999998888765544444 3333332 23566666666533333333333
Q ss_pred HHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEF 188 (474)
Q Consensus 175 LEe~IkqLq~EI~~ 188 (474)
++++...|..+...
T Consensus 173 ~~ee~~sl~~e~Kl 186 (488)
T PF06548_consen 173 IDEEYVSLMHEHKL 186 (488)
T ss_pred hhhHhhhhhhHhhh
Confidence 44444444333333
No 359
>PRK04325 hypothetical protein; Provisional
Probab=47.24 E-value=96 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.031 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
..+..|+..+.-.+..|+.|...|...
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Q 35 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQ 35 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 360
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.84 E-value=62 Score=26.02 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
|..++-.++..++.+..+|+++++.+..+...++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555444444444444
No 361
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.42 E-value=6.9e+02 Score=31.25 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=30.9
Q ss_pred cCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 011943 60 ADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNEC 122 (474)
Q Consensus 60 ~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi 122 (474)
.-|+-+..+-.-|-.+|=...=..| ++-+++.|..|..+.+.+-..-..++..+..|..+.
T Consensus 719 l~G~~~k~~a~~IG~~aR~~~R~~r--i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 719 LRGAWAKPAAEYIGAAARERARLRR--IAELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred eecccCCcchhHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466665555566666622111111 345666666666665555444444444444444443
No 362
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.37 E-value=4.9e+02 Score=29.50 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 011943 110 TLEGTVQQLQNECDLYKEK 128 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqk 128 (474)
.+-..|.+..+.|..+.++
T Consensus 306 ~L~qqV~qs~EKIa~LEqE 324 (518)
T PF10212_consen 306 GLAQQVQQSQEKIAKLEQE 324 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445544444444444
No 363
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=46.09 E-value=3.9e+02 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=13.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 011943 168 HIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 168 ~~QkEa~LEe~IkqLq~EI~~ 188 (474)
...+-+.|+.+|..|+.-+-.
T Consensus 207 ~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 207 QLARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 455666677777777765544
No 364
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.72 E-value=1.5e+02 Score=30.91 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (474)
Q Consensus 118 LqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Le 197 (474)
.+..+.....+|.. +.++|..|+.+++..++....++..+...+.+..... .=+.-|-+|..-|...-..++
T Consensus 233 ~~~~L~~~~~~l~~-l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~-------~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 233 AEEQLAEKQAELAE-LEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAE-------KLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH-------HHHhhhcchhhhHHHHHHHHH
Confidence 33333333333322 2444455666666666666666655555544422221 124445566666777777777
Q ss_pred HHHHHH
Q 011943 198 QKISQL 203 (474)
Q Consensus 198 eeL~~L 203 (474)
.++..+
T Consensus 305 ~~~~~l 310 (344)
T PF12777_consen 305 EQLKNL 310 (344)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 776666
No 365
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.56 E-value=1.6e+02 Score=25.84 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhh
Q 011943 251 QLRMQVVELEESRNNLLQENRQL--KENVSSLRSQLSSD 287 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~L--keqIseL~~~iqtl 287 (474)
.+...+...+.++..++.+++.| ...+..|+..+..+
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el 77 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAEL 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33333333444444444444444 33333443333333
No 366
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.33 E-value=4.8e+02 Score=29.14 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 011943 116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH-IQREGGLEMNIANLQSEKEFWLQKEA 194 (474)
Q Consensus 116 kqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~-~QkEa~LEe~IkqLq~EI~~llqKEa 194 (474)
+.....+.....+-+.+..+...+.+... .+.....+..+.+.+.+.+.. .+++..+..+=.+|...-+.+-+++.
T Consensus 21 ~~a~~~l~~Ae~eAe~i~keA~~eAke~~---ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e 97 (514)
T TIGR03319 21 RIAEKKLGSAEELAKRIIEEAKKEAETLK---KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKME 97 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 011943 195 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ---LRMQVVELEESRNNLLQENR 271 (474)
Q Consensus 195 ~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~s---Lq~QV~~LEesl~sL~eEiq 271 (474)
.++.+-..|......|..++. .+..+..+.+.........=+.++++..+-.. |..=...++.+...+..++.
T Consensus 98 ~Lekre~~Le~ke~~L~~re~----eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~ 173 (514)
T TIGR03319 98 SLDKKEENLEKKEKELSNKEK----NLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIE 173 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 011943 272 Q 272 (474)
Q Consensus 272 ~ 272 (474)
.
T Consensus 174 ~ 174 (514)
T TIGR03319 174 E 174 (514)
T ss_pred H
No 367
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=45.26 E-value=2.9e+02 Score=26.66 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=7.9
Q ss_pred hhhh-chHHHHhhhHHHH
Q 011943 233 QMES-VSKETIAGLSVDI 249 (474)
Q Consensus 233 kkEI-sLke~Issl~~~~ 249 (474)
..|| .|+.....++..+
T Consensus 169 ~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4444 4555444444443
No 368
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=45.03 E-value=4.1e+02 Score=28.29 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 011943 89 ILEETVKHLRNERESHIQ 106 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~~ 106 (474)
++.++|..-+.+...-.+
T Consensus 205 ~s~~ni~~a~~e~~~S~~ 222 (384)
T PF03148_consen 205 FSNENIQRAEKERQSSAQ 222 (384)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455667666666554433
No 369
>PF13945 NST1: Salt tolerance down-regulator
Probab=44.80 E-value=1.6e+02 Score=28.92 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=5.7
Q ss_pred hhhhHhhHHHH
Q 011943 104 HIQKEATLEGT 114 (474)
Q Consensus 104 ~~~~e~~~Ee~ 114 (474)
.|-|+++|.++
T Consensus 124 kIEKe~VLkkm 134 (190)
T PF13945_consen 124 KIEKEAVLKKM 134 (190)
T ss_pred HhhHHHHHHHH
Confidence 35555555544
No 370
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.48 E-value=4.8e+02 Score=28.93 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 153 ~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
..+.++.+|..+.-...++...+-+++.-++.+......+....+-+|..|+.++..|
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555666666666666667777777777777776666544
No 371
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=44.39 E-value=3.2e+02 Score=26.81 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH-----------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH-----------IQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~-----------~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~ 201 (474)
+.++|++|+.++...-.+...+--.....+.-..+. ......+..+|...+..-.-+.++-.-|+.-+.
T Consensus 9 LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~ 88 (178)
T PF14073_consen 9 LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVE 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666555555444444433333222211 112334556666666666667777777777777
Q ss_pred HHHHHHHHHHHhhhh
Q 011943 202 QLRDESAALNMKRAS 216 (474)
Q Consensus 202 ~L~~e~~~L~qKQ~~ 216 (474)
....++.....++.+
T Consensus 89 ~ae~er~~~le~q~~ 103 (178)
T PF14073_consen 89 SAEKERNAVLEQQVS 103 (178)
T ss_pred HHHHhhhHHHHHHHH
Confidence 777777666666663
No 372
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=44.37 E-value=2.1e+02 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
++.++..++.++..+.++...+..++..+..+.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554443
No 373
>PF14992 TMCO5: TMCO5 family
Probab=43.65 E-value=4e+02 Score=27.82 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=15.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNL 266 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL 266 (474)
.++..+...+.....++..+..++..+..+
T Consensus 106 ~~~~~lq~sk~~lqql~~~~~~qE~ei~kv 135 (280)
T PF14992_consen 106 QLSQSLQFSKNKLQQLLESCASQEKEIAKV 135 (280)
T ss_pred chhcccHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555544444
No 374
>PRK00736 hypothetical protein; Provisional
Probab=43.58 E-value=90 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011943 251 QLRMQVVELEESRNNLL 267 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~ 267 (474)
.|...+..++..+..|.
T Consensus 9 ~LE~klafqe~tie~Ln 25 (68)
T PRK00736 9 ELEIRVAEQEKTIEELS 25 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 375
>PRK00295 hypothetical protein; Provisional
Probab=43.57 E-value=1.1e+02 Score=25.09 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 243 AGLSVDITQLRMQVVELEESRNNLL 267 (474)
Q Consensus 243 ssl~~~~~sLq~QV~~LEesl~sL~ 267 (474)
+=+...+..|...|......+..|.
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 376
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.51 E-value=2.4e+02 Score=28.67 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=31.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 293 ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 293 ~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
|..+...+..++..+..+.+.|-.+|.+|-||+-=|+
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777888888888999999999999998873
No 377
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=42.93 E-value=3.2e+02 Score=26.49 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------------HHHHHHHHHHHHhHHHH
Q 011943 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQL---------------QRQNDLRMQKEATLEET 157 (474)
Q Consensus 93 ti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQL---------------e~E~~~~lQkeA~lE~k 157 (474)
|++.|+.+.|. +-+.+.+|+......++..+.+..+.+++| .++.+.+.-+. -++.
T Consensus 35 ~l~~lkqqqd~-------itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i--~el~ 105 (165)
T PF09602_consen 35 TLKKLKQQQDW-------ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI--QELL 105 (165)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEF----WLQKEAALEQKISQLRDES 207 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~----llqKEa~LeeeL~~L~~e~ 207 (474)
+...+...+...|-...++++++++=..-.. |.+....+-.+++.++...
T Consensus 106 ~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~k~~q~~~ 159 (165)
T PF09602_consen 106 LSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQAKSSQKEL 159 (165)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 378
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.87 E-value=5.5e+02 Score=29.11 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=14.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELE 260 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LE 260 (474)
.|.+-|.+++..+..-+++|..|+
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556666666666666665555
No 379
>PRK01203 prefoldin subunit alpha; Provisional
Probab=42.72 E-value=2.8e+02 Score=25.76 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~q 212 (474)
.+.+++..|+.+++.+.++...++..+.++..-..+|..
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467788888888888888888888888888776666644
No 380
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.51 E-value=5.9e+02 Score=29.34 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 75 EAERQHLLQREAMAILEETVKHLRNERE 102 (474)
Q Consensus 75 e~~~~~~~q~e~~~~~eeti~~l~~e~d 102 (474)
++|-. +|+--+ +.+..|++|.=..+
T Consensus 88 ~teie-iLkSr~--v~~~VV~~L~L~~~ 112 (726)
T PRK09841 88 APEIQ-LLQSRM--ILGKTIAELNLRDI 112 (726)
T ss_pred HHHHH-HHHHHH--HHHHHHHHhCCceE
Confidence 34433 455555 66666766554433
No 381
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=42.21 E-value=1.3e+02 Score=25.67 Aligned_cols=34 Identities=35% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
|-.|.++|...+....+||..|..-+..|+..+.
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi 36 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI 36 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666655555555544444
No 382
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=42.10 E-value=6.7e+02 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 178 ~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
+|-.||+-+.++..+-.+....++.|+.++.-|
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneel 460 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEEL 460 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 445555555555555555555555554444433
No 383
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.86 E-value=1.9e+02 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 136 TIQQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
+++..+..+..+.+.+..++..+.+|+.
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3355666677777777777777766654
No 384
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.54 E-value=3.4e+02 Score=27.54 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (474)
Q Consensus 172 Ea~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qK 213 (474)
+..+-.+...|+.+.....+.-..++.++..|+.-+-.||-|
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555444444
No 385
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=41.30 E-value=6.8e+02 Score=29.75 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
.+++-+.-.|...++..+..|.++++...-...+....+..+.-++.- ..+..++.-..++...+..|.++-.
T Consensus 530 ~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~-----~~~~~i~~l~~el~eq~~~~~~~~~ 602 (809)
T KOG0247|consen 530 MNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST-----EYEEEIEALDQELEEQKMELQQKFS 602 (809)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-----hhhhhhHHHHHHHHhhhHHHHhhcc
Confidence 444555577778888888888888888777777776666666555544 3333344444444444444444444
No 386
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.21 E-value=3.5e+02 Score=26.38 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhhh
Q 011943 89 ILEETVKHLRNERE 102 (474)
Q Consensus 89 ~~eeti~~l~~e~d 102 (474)
.+=|.|+.|+-++.
T Consensus 54 ~l~e~v~~l~idd~ 67 (190)
T PF05266_consen 54 NLAEKVKKLQIDDS 67 (190)
T ss_pred HHHHHHHHcccCCc
Confidence 45566777766554
No 387
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.10 E-value=1.5e+02 Score=34.16 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=44.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011943 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITEN 318 (474)
Q Consensus 242 Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEn 318 (474)
|..+.-...+...+..+++..+-.|..+|.+++..|.+|+..|-.- ..+...|+-.+++++-.-++|...|
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~------q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK------QLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh------HHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3444445555566666666666666666666666666665555433 4456667777888887777776664
No 388
>PF14282 FlxA: FlxA-like protein
Probab=41.00 E-value=83 Score=27.66 Aligned_cols=21 Identities=38% Similarity=0.465 Sum_probs=8.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEE 261 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEe 261 (474)
.|..|+..+..|+.++..|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444443
No 389
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.78 E-value=74 Score=25.25 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
....+..++..++..+..+..+++.|+..+..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666666666666666666666
No 390
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.65 E-value=1.4e+02 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=16.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~ 272 (474)
.|-.+..+...+..++..|+.+++.+..++..
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555544
No 391
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.54 E-value=83 Score=33.37 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=24.6
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
|...|..+...+..+...+..++.....+...+..+...+.+++.++.
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444445555555555555555555666666666655544
No 392
>PRK00736 hypothetical protein; Provisional
Probab=40.21 E-value=1.2e+02 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 256 VVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 256 V~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+..|+..+.-.+..|+.|...|...
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Q 31 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQ 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 393
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=40.17 E-value=3.7e+02 Score=26.39 Aligned_cols=122 Identities=13% Similarity=0.154 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 84 REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 84 ~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
....+.++.|+..|.+ .+-+-.+-.-+.+.|...-.++..+...+..+.... ...-....--....+|-.|.+...
T Consensus 17 ~~~i~~l~~al~~L~~-~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~---~~~~~~~~~~s~~eLeq~l~~~~~ 92 (240)
T PF12795_consen 17 KALIQDLQQALSFLDE-IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQD---APSKEILANLSLEELEQRLSQEQA 92 (240)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc---cccccCcccCCHHHHHHHHHHHHH
Confidence 3445566777766653 333344444455555555555555555543332210 000000011123344555555555
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 164 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (474)
Q Consensus 164 ~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~ 209 (474)
...............+..++...+...+.......++.++......
T Consensus 93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555556666666666666666666666666555443
No 394
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.16 E-value=5.5e+02 Score=28.39 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=13.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQ 130 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE 130 (474)
....+...|......+..+..+|.
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELA 268 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665543
No 395
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.99 E-value=84 Score=25.61 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 243 ssl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
+=+...+..|..-|......+..|...++.|..++.+
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333333
No 396
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.84 E-value=3.4e+02 Score=25.85 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 297 QKDFSTQIEAAGALIDKLITENIELVEK 324 (474)
Q Consensus 297 ~~dLksQiEal~d~RK~LwrEnakL~ek 324 (474)
...|+.....+.+.=..+++.-..++++
T Consensus 126 e~~l~~e~~~l~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 126 EAELKKEYNRLHERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555554444443
No 397
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.76 E-value=3.7e+02 Score=26.23 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=21.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
+..|..++.....+..+-.....++..+......+.+.+.+.+.+.++
T Consensus 137 e~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 137 EMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344344444444445555555555555555444443
No 398
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=39.42 E-value=3.9e+02 Score=26.35 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEF 188 (474)
Q Consensus 175 LEe~IkqLq~EI~~ 188 (474)
.+.+|..|+.++..
T Consensus 83 qe~eI~~Le~e~~~ 96 (206)
T PF14988_consen 83 QEREIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 399
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.17 E-value=4.9e+02 Score=27.44 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
++.-|+.+....-++....|..+..|+.+++.
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33556666666666667777777777776654
No 400
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.99 E-value=1.2e+02 Score=23.89 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 256 VVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 256 V~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
+..|+..+..|..++..|+..+..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 401
>PF13514 AAA_27: AAA domain
Probab=38.90 E-value=7.9e+02 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQL 284 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~i 284 (474)
...+..+..++..+...+..+..++
T Consensus 807 ~~~~~~~~~~~~~~~~~l~~~~~~l 831 (1111)
T PF13514_consen 807 QEQLEELEEELEQAEEELEELEAEL 831 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 402
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=38.72 E-value=4.9e+02 Score=27.39 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 011943 109 ATLEGTVQQLQNECDLYKEKVQ 130 (474)
Q Consensus 109 ~~~Ee~IkqLqeEi~~lkqkLE 130 (474)
..++..+.+++.++.....+++
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~ 195 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLS 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 403
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.70 E-value=1.5e+02 Score=27.31 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=22.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
.|..++......+..|+.++...+..+..-.+.+++|+..+..+
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKAL 74 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555544444444433
No 404
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=38.42 E-value=4.4e+02 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQL 161 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdL 161 (474)
..+..++...-.|=...+.-+.+|
T Consensus 158 ~~~~~~Y~~~p~Kg~ka~evL~~f 181 (297)
T PF02841_consen 158 DELEKEYEQEPGKGVKAEEVLQEF 181 (297)
T ss_dssp HHHHHHHHHSS---TTHHHHHHHH
T ss_pred HHHHHHHhhcCCCCccHHHHHHHH
Confidence 444444433333333344444444
No 405
>PRK00846 hypothetical protein; Provisional
Probab=38.25 E-value=1.6e+02 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=17.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
..++=+...+..|...|......+..+...++-|.+++.+.
T Consensus 20 ~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 20 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444444444433
No 406
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=38.25 E-value=3.1e+02 Score=27.47 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhc
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV 237 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIs 237 (474)
|..|+..+......-...-..+...+..++...++-+....++..|...+..|.---. ||+..|-..-..|-+.|..
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~Dl---eRFT~Lyr~dH~~e~~e~~ 110 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADL---ERFTELYRNDHENEQAEEE 110 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHH---HHHHHHHHhhhhhHHHHHH
Q ss_pred hHHHHhhhHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVE 258 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~ 258 (474)
++..+.........+..+...
T Consensus 111 ak~~l~~aE~~~e~~~~~L~~ 131 (207)
T PF05546_consen 111 AKEALEEAEEKVEEAFDDLMR 131 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 407
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.22 E-value=1.2e+02 Score=29.34 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
.++..|..+...|+..+..|..++..|...+...+....+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333
No 408
>PRK11546 zraP zinc resistance protein; Provisional
Probab=38.22 E-value=1.9e+02 Score=27.34 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 176 Ee~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
.++...++.-.+....+-..|+++|-..+.+..+|++....=+++|..+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL 94 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAV 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566778888888888888899999888888888887777444444444
No 409
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=3.2e+02 Score=25.12 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 179 IANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
..+|+...+...-.-..++..|++....
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~a 42 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKA 42 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 410
>PRK01203 prefoldin subunit alpha; Provisional
Probab=38.02 E-value=3.4e+02 Score=25.27 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=29.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 330 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~ 330 (474)
...+..|+.+++++.......-+.=..|...+++|+|
T Consensus 86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~~ 122 (130)
T PRK01203 86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVYI 122 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888877777778888888874
No 411
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.90 E-value=2.6e+02 Score=24.57 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 253 RMQVVELEESRNNLLQENRQLKEN 276 (474)
Q Consensus 253 q~QV~~LEesl~sL~eEiq~Lkeq 276 (474)
..++..|+-++..+..+++.+..+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333333333333333333
No 412
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=37.58 E-value=6.6e+02 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=20.0
Q ss_pred Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHH
Q 011943 225 EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEES 262 (474)
Q Consensus 225 KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEes 262 (474)
+++=|.-+-.|- .....|..++.+++.+..++.-+.+.
T Consensus 439 Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~ 477 (531)
T PF15450_consen 439 KSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKED 477 (531)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444444 55555555555555555555555443
No 413
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.57 E-value=2.4e+02 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (474)
Q Consensus 246 ~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~ 282 (474)
......+..+++.+++++...+.++..|+.|.+.+..
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555566666666666555543
No 414
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=37.43 E-value=2.4e+02 Score=23.45 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=23.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 242 Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
+..+...+..+..-+..++++...+..+...+....+.+...++
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555544444
No 415
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.38 E-value=1.6e+02 Score=23.75 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=4.9
Q ss_pred hhhhhhhHHHHH
Q 011943 294 TSEQKDFSTQIE 305 (474)
Q Consensus 294 ~~E~~dLksQiE 305 (474)
..|.+..+.+|+
T Consensus 37 k~EAaRAN~RlD 48 (56)
T PF04728_consen 37 KEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 416
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.25 E-value=5.5e+02 Score=27.49 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 120 NECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK 199 (474)
Q Consensus 120 eEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Leee 199 (474)
++...+...++..+.++=.+|..=..++.+..-.++-+=+-|.+..+...+.=.....++..++..+...-.-...+..+
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHh-Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011943 200 ISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (474)
Q Consensus 200 L~~L~~e~~~L~qKQ~~LEERisQF-KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV 256 (474)
|..+..++... ..-++||.+.. -..==..+++=+ .|+..|..+...+.-+++.+
T Consensus 303 L~~IseeLe~v---K~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh~L 358 (359)
T PF10498_consen 303 LAEISEELEQV---KQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEHTL 358 (359)
T ss_pred HHHHHHHHHHH---HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehhhc
No 417
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.43 E-value=7.3e+02 Score=28.71 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHH-hhhhhhhhhh-----------hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011943 84 REAMAILEETVKH-LRNERESHIQ-----------KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKE 151 (474)
Q Consensus 84 ~e~~~~~eeti~~-l~~e~d~~~~-----------~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQke 151 (474)
.|.-.+|+.||+. ||--...|+- --.+|-..|+-+.+.--...+.+..-+.-.+.+|....++.+|..
T Consensus 525 QE~~~~f~k~i~s~lqrsva~paL~~~~SsP~~~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l 604 (741)
T KOG4460|consen 525 QETPDSFEKHIRSILQRSVANPALLKASSAPPPEECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDL 604 (741)
T ss_pred hhcCCcHHHHHHHhhhhhcCChhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577777776 4443333322 223455566666666555555665656666666776666666666
Q ss_pred HhHHHHHHHHHh
Q 011943 152 ATLEETIKQLRN 163 (474)
Q Consensus 152 A~lE~kIkdLq~ 163 (474)
+..+.+++.++.
T Consensus 605 ~~~~eer~~i~e 616 (741)
T KOG4460|consen 605 SYCREERKSLRE 616 (741)
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 418
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.42 E-value=43 Score=32.20 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=11.9
Q ss_pred HHHHHhhhhHHHHhhhhHHHHH
Q 011943 158 IKQLRNQNDLHIQREGGLEMNI 179 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~I 179 (474)
|.+|+.+......+.+.||.+|
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3455555555555555555555
No 419
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=36.27 E-value=2e+02 Score=26.45 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALID 312 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK 312 (474)
.+.=|+.+=...+.+.+.|+-|-.+++.+|..|+++.... ..-..+|..+|.-|...-+
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~------e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQ------ENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4455888889999999999999999999999999988877 4445555555555544333
No 420
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.22 E-value=2.5e+02 Score=30.26 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 177 MNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 177 e~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
+.+..+......+..+...++.++..|.....
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555544443
No 421
>PRK02119 hypothetical protein; Provisional
Probab=36.18 E-value=1.8e+02 Score=24.20 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKI 200 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL 200 (474)
|.+.+..-+.+|+.+..+-..|..+|
T Consensus 28 LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 28 LNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333333333
No 422
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.13 E-value=6.4e+02 Score=27.99 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=61.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011943 68 AESANLAEAERQHLLQREAMAILEETVKHLRNERES-HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDL 146 (474)
Q Consensus 68 ~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~-~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~ 146 (474)
.+.++..+.=+..++-.++-..+=-|+.-++.+-.- .-|--...++.+.++++++...+.+...+..+-|.+.+ .
T Consensus 18 ~e~s~~~~~~~~~~i~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~----~ 93 (438)
T COG4487 18 CEDSIKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE----L 93 (438)
T ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 344555555444444444433333344443333221 22222233377888888888887776665666655555 2
Q ss_pred HHHHHHhHHHHHHHHHhh---hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 147 RMQKEATLEETIKQLRNQ---NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 200 (474)
Q Consensus 147 ~lQkeA~lE~kIkdLq~~---~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL 200 (474)
.+ ...|..+... +..+.-..+.|+.+++.+..+....++..+...+.-
T Consensus 94 ~~------q~e~~~~~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kk 144 (438)
T COG4487 94 AL------QDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKK 144 (438)
T ss_pred HH------HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2223333221 123344445566777777777776555444443333
No 423
>PRK11546 zraP zinc resistance protein; Provisional
Probab=35.91 E-value=99 Score=29.15 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 221 LKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (474)
Q Consensus 221 isQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~ 282 (474)
-.+|+.=++.+..+=..|+..+-..+.++..|...-.-=.+.+..+..||..|+.++.++..
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343334555444447777777777777777666666666677777777777766665533
No 424
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.87 E-value=1.5e+02 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 253 RMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 253 q~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
...+..|+..+.-.+..|+.|.+-|...
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Q 34 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAH 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 425
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=35.81 E-value=4.3e+02 Score=25.90 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q 011943 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
..+++.-|+.++-.+....+..|.+|+.|+.+..--.+.+-.+.++-.+||.+.+
T Consensus 118 klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 118 KLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4566788999999999999999999999999999888888888888888888764
No 426
>smart00338 BRLZ basic region leucin zipper.
Probab=35.68 E-value=1.3e+02 Score=23.70 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 257 VELEESRNNLLQENRQLKENVSSLRSQ 283 (474)
Q Consensus 257 ~~LEesl~sL~eEiq~LkeqIseL~~~ 283 (474)
..|+..+..|..+|..|..++..|...
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 427
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.41 E-value=4e+02 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 246 ~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
..+...|...+..+...+.+-...|.+|+.+|..++..++
T Consensus 141 ~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 141 QKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666655554
No 428
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.39 E-value=5.7e+02 Score=27.14 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ 214 (474)
.|-+.|.+.+.|.+.+.-...+|+..+..++.+...|..-+
T Consensus 34 iL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~g 74 (389)
T KOG4687|consen 34 ILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACG 74 (389)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 34455667777777777777788888877777776665543
No 429
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.24 E-value=1.3e+02 Score=28.36 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=25.7
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQ---ENRQLKENVSSLRSQLS 285 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~e---Eiq~LkeqIseL~~~iq 285 (474)
.+..+.....++..+..|+......+..|.. -+..|+.+|..|+....
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554 45555555555544444
No 430
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=34.96 E-value=2e+02 Score=32.12 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=50.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALI 311 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~R 311 (474)
+..+++.++-..+...+..+..+...+..+....++++..+..++-.+..+ ......|+.++|+....|
T Consensus 429 ~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l------~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 429 SSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL------VERTRELQKQIEADISKR 497 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 566777777777777777778877777777777777777777777777766 666667777776655443
No 431
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=34.91 E-value=6.1e+02 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011943 276 NVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKL 314 (474)
Q Consensus 276 qIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~L 314 (474)
..+++++.++.. .+-+...+..++.+.-..++|
T Consensus 230 Kyeefq~tl~KS------NE~F~~fK~E~ekmtKk~kkl 262 (391)
T KOG1850|consen 230 KYEEFQTTLAKS------NELFTKFKQEMEKMTKKIKKL 262 (391)
T ss_pred HHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHH
Confidence 344666666654 444555666655555555443
No 432
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=34.76 E-value=6e+02 Score=27.26 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
+..++..++.....|..++..++.++..
T Consensus 340 ~~~~~~~l~~~~~~L~~~~~~l~~~~~~ 367 (458)
T COG3206 340 LPNELALLEQQEAALEKELAQLKGRLSK 367 (458)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444443
No 433
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.58 E-value=2e+02 Score=23.41 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 011943 296 EQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 296 E~~dLksQiEal~d~RK~Lwr 316 (474)
.+..+..+++.+.+-.+=+||
T Consensus 35 ~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 35 DIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777776
No 434
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.53 E-value=2.1e+02 Score=30.88 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 243 AGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (474)
Q Consensus 243 ssl~~~~~sLq~QV~~LEesl~sL~eEiq~ 272 (474)
-.+..+...++.++..|+.+++.+..+|..
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555544
No 435
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.48 E-value=4.4e+02 Score=25.53 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011943 118 LQNECDLY 125 (474)
Q Consensus 118 LqeEi~~l 125 (474)
++++|...
T Consensus 59 Y~~~i~~A 66 (161)
T TIGR02894 59 YEEAIELA 66 (161)
T ss_pred HHHHHHHH
Confidence 33333333
No 436
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=34.40 E-value=8e+02 Score=28.57 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------------------------
Q 011943 143 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA---------------------------- 194 (474)
Q Consensus 143 E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa---------------------------- 194 (474)
-...+.|-+..+.-.|.-++...+..+.-+..+..-|..|..||+...+.-=
T Consensus 96 l~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~ 175 (683)
T PF08580_consen 96 LIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMP 175 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhcc
Confidence 3344445555677778888888889999999999999999999988222221
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011943 195 --------------------ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR 253 (474)
Q Consensus 195 --------------------~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq 253 (474)
.+-..+-.|.+...=|.+--..|=+|+..|++=-..++-.=. .|...-..+...+..|+
T Consensus 176 ~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~ 255 (683)
T PF08580_consen 176 SSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLE 255 (683)
T ss_pred ccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222244444444444444456677899999554456655555 77777788888888888
Q ss_pred HHHHHHHHHHH
Q 011943 254 MQVVELEESRN 264 (474)
Q Consensus 254 ~QV~~LEesl~ 264 (474)
.+...|++++-
T Consensus 256 ~e~~~LK~ELi 266 (683)
T PF08580_consen 256 KEAESLKKELI 266 (683)
T ss_pred HHHHHHHHHhh
Confidence 88888888765
No 437
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.21 E-value=4e+02 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 243 ssl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.+....+.-+...+..|++....+..-++++...+..++..++
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~ 126 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELE 126 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888888888888888888888887777765554
No 438
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=34.19 E-value=2.2e+02 Score=26.06 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=26.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITE 317 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrE 317 (474)
|...+..+.........-+..+...+..|....-....++..+..+...+ ...+-.+=..++-+.-.--.|-.+
T Consensus 35 L~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L------~hR~l~v~~~~eilr~~g~~l~~e 108 (141)
T PF13874_consen 35 LKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQEL------SHRLLRVLRKQEILRNRGYALSPE 108 (141)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 44444555555555555555555555555444444444455554444444 333333444444444344456666
Q ss_pred HHHHHhhhhhhhHh
Q 011943 318 NIELVEKVNDLSVK 331 (474)
Q Consensus 318 nakL~ekvneL~~~ 331 (474)
+..|..++..|.-.
T Consensus 109 Ee~L~~~le~l~~~ 122 (141)
T PF13874_consen 109 EEELRKRLEALEAQ 122 (141)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666533
No 439
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.13 E-value=1.1e+02 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~ 282 (474)
....++.++..++.++..+..+|+.|+.+|..|++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777777777777777777777777766644
No 440
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.74 E-value=2.9e+02 Score=29.42 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=30.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.|...-..+++..........++.+..+.....+...+..+.++...++.+
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555556666666666666666666666666666666655
No 441
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=33.61 E-value=3.1e+02 Score=29.26 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 011943 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK----KHATSEQKDFSTQIEAAGALIDKLITEN 318 (474)
Q Consensus 244 sl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~----~~~~~E~~dLksQiEal~d~RK~LwrEn 318 (474)
.+++.|..|..|+.-++++-.-|+..+.+-.-.|..|..++..||+. --++.-+-+++.|+-++...++-|=||=
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777787777777777777777777777777777777652 2223456788888888888888887774
No 442
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=33.56 E-value=14 Score=40.94 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhH---HHHHHHhHhhhhhh
Q 011943 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESA-ALNMKRASL---EERLKLLEADKDSW 231 (474)
Q Consensus 176 Ee~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~-~L~qKQ~~L---EERisQFKaERDsW 231 (474)
+++|..|+........+-.+++.+|..-+.... .|.+=++.| |+|+.+.+-|+|.-
T Consensus 375 EqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~q 434 (495)
T PF12004_consen 375 EQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQ 434 (495)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHH
Confidence 334444444444444444444444433322211 223333333 34666666666653
No 443
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.44 E-value=1.4e+02 Score=24.03 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=17.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
...+.++...+..++.+...+.+++..+.+.++.|
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555544
No 444
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.00 E-value=7.2e+02 Score=27.63 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHH
Q 011943 175 LEMNIANLQSEKEF----WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI 249 (474)
Q Consensus 175 LEe~IkqLq~EI~~----llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~ 249 (474)
|++....|++-|-. +...-..++--|.+..+...-|..|...|++++.-|+. +..|. .+...|++...+.
T Consensus 228 Lee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qt-----i~~e~~~~lk~i~~~~~e~ 302 (446)
T KOG4438|consen 228 LEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQT-----IEKELKALLKKISSDGVEY 302 (446)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH-----HHHHHHHHHHHHHHhhhhh
Confidence 34444444444433 45555555555666666667777888888888888842 34555 5555555555444
Q ss_pred HHHHHHHHHHH
Q 011943 250 TQLRMQVVELE 260 (474)
Q Consensus 250 ~sLq~QV~~LE 260 (474)
.++...++.++
T Consensus 303 d~~Et~~v~lk 313 (446)
T KOG4438|consen 303 DSLETKVVELK 313 (446)
T ss_pred hhhHHHHHHHH
Confidence 54444444433
No 445
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=32.92 E-value=2.9e+02 Score=22.98 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011943 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQAT-------LEETIQQLQRQNDLRMQKEATLEETIK 159 (474)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~l-------leEkikQLe~E~~~~lQkeA~lE~kIk 159 (474)
+.++.=+|..+........++...|-..|..+..++..+..-.... ...++..+..+....-++...++.++.
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 011943 160 QLRN 163 (474)
Q Consensus 160 dLq~ 163 (474)
.|+.
T Consensus 89 ~L~q 92 (92)
T PF14712_consen 89 KLQQ 92 (92)
T ss_pred hhcC
No 446
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.89 E-value=5.8e+02 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 011943 144 NDLRMQKEATLEETIKQLRNQ 164 (474)
Q Consensus 144 ~~~~lQkeA~lE~kIkdLq~~ 164 (474)
...+-..++.++.+|+.-+.+
T Consensus 185 l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 447
>PF14992 TMCO5: TMCO5 family
Probab=32.76 E-value=4.7e+02 Score=27.33 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 134 eEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
+-...+|...+..+++++-..|..|-.|..++--
T Consensus 10 e~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~ 43 (280)
T PF14992_consen 10 EKDEQRLDEANQSLLQKIQEKEGAIQSLEREITK 43 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344678888999999999998888887776543
No 448
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=32.65 E-value=3.4e+02 Score=23.68 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEE 261 (474)
Q Consensus 248 ~~~sLq~QV~~LEe 261 (474)
+|.+|++++..++.
T Consensus 52 EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 52 ENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 449
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.64 E-value=5.8e+02 Score=26.39 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=20.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.++.++.++..++.+...+......---.+..++.++..++.++.
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~ 259 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID 259 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH
Confidence 344444444444444444443322223344455555555555554
No 450
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.56 E-value=5.2e+02 Score=25.88 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011943 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (474)
Q Consensus 109 ~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~ 164 (474)
.+++.-|++.+.++..+.+.+....... ++++.+.+.+......++.....-=..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~-k~~e~~~~~~~~~~~k~e~~A~~Al~~ 81 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQ-KQLERKLEEAQARAEKLEEKAELALQA 81 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8899999999999999999987777777 888888888888777777766554333
No 451
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.54 E-value=7.5e+02 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 303 QIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 303 QiEal~d~RK~LwrEnakL~ekvneL 328 (474)
+..++.-..|.|..+|-.|.+-.-+|
T Consensus 404 Re~eleqevkrLrq~nr~l~eqneel 429 (502)
T KOG0982|consen 404 REIELEQEVKRLRQPNRILSEQNEEL 429 (502)
T ss_pred HHHHHHHHHHHhccccchhhhhhhhh
Confidence 35566777788888888888755555
No 452
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=32.40 E-value=4.7e+02 Score=25.24 Aligned_cols=19 Identities=11% Similarity=0.302 Sum_probs=8.2
Q ss_pred hhhhh-chHHHHhhhHHHHH
Q 011943 232 TQMES-VSKETIAGLSVDIT 250 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~ 250 (474)
+.+|+ .+...|...+.++.
T Consensus 82 ~RkEv~~vRkkID~vNreLk 101 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELK 101 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 33444 44444444444444
No 453
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.04 E-value=3e+02 Score=27.42 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 011943 297 QKDFSTQIEAAGALIDKLITENIEL 321 (474)
Q Consensus 297 ~~dLksQiEal~d~RK~LwrEnakL 321 (474)
+.+..-+.+...+.--.+|+.|.-.
T Consensus 149 v~~k~~~~~K~~~eaanrwtDnI~i 173 (203)
T KOG3433|consen 149 VFEKKVHLEKTMAEAANRWTDNIFI 173 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3334444444444555688888543
No 454
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=31.97 E-value=3.5e+02 Score=29.19 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=57.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 124 LYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 124 ~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
++..+.+-.+-.- .||+++.+.+|=.+-.+...+.++....-..-..-..+..+++.++.-++.|.-+.+++++.|.+-
T Consensus 123 EveekykkaMvsn-aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 123 EVEEKYKKAMVSN-AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHH-HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444 688888888888888888888887776554444444577778888888888988888888888764
No 455
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.43 E-value=3.4e+02 Score=23.39 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
......-+...+..++..+..+...+..+..++..+...++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555544443
No 456
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.34 E-value=2.4e+02 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=11.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEESRN 264 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~ 264 (474)
.|..++.+|..|.-.|-.|++.+.
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 457
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.33 E-value=4.4e+02 Score=24.67 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
.|++.-.+|..+|+.+..+......+|..| +..||+|=|
T Consensus 85 ~LEe~ke~l~k~i~~les~~e~I~~~m~~L---K~~LYaKFg 123 (131)
T KOG1760|consen 85 QLEEKKETLEKEIEELESELESISARMDEL---KKVLYAKFG 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhc
Confidence 366666667777777777777777777777 456787766
No 458
>PRK04325 hypothetical protein; Provisional
Probab=30.93 E-value=1.9e+02 Score=24.12 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
+...+..|..-|......+..|...++.|..++
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 459
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.19 E-value=1.4e+02 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
.....+..++..++..+..+..++..|+.+++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666777777776666655
No 460
>PHA01750 hypothetical protein
Probab=30.14 E-value=1.6e+02 Score=24.87 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=19.3
Q ss_pred Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHH
Q 011943 225 EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEES 262 (474)
Q Consensus 225 KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEes 262 (474)
+..-...+++|. .|...|+..+....-|+.||++++..
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 433344455555 55555555555444555555554443
No 461
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.90 E-value=4.1e+02 Score=23.83 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 011943 295 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 333 (474)
Q Consensus 295 ~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~ 333 (474)
+-..+|..+++-+....+.|-.....|.+++.+++-+|.
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888888888888888888875554
No 462
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=29.76 E-value=5.5e+02 Score=25.20 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred HHHHHHHh---HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 217 LEERLKLL---EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 217 LEERisQF---KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+++|...| -..+..||..|-.|-..+..-......|..+|..+-.....+...++...+.....
T Consensus 124 ~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~y 190 (204)
T PF10368_consen 124 MKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKY 190 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 67888999999999999999999999999999998888777777776665555444
No 463
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=29.75 E-value=6.9e+02 Score=26.41 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=6.8
Q ss_pred ccCCCCCCCcc
Q 011943 59 DADRHQSNGAE 69 (474)
Q Consensus 59 ~~~~~~~~~~~ 69 (474)
|-+|-.|..||
T Consensus 47 dNHGikPP~PE 57 (305)
T PF15290_consen 47 DNHGIKPPNPE 57 (305)
T ss_pred cCCCCCCCCHH
Confidence 55666666665
No 464
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.72 E-value=2.3e+02 Score=32.74 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=28.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.+++.+++...++..|+...++|..++..+...|..|+..|-.-+..+..+
T Consensus 83 e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 83 EQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444555555555555555555566655555555555555555555544
No 465
>PLN02678 seryl-tRNA synthetase
Probab=29.47 E-value=2.6e+02 Score=30.78 Aligned_cols=11 Identities=18% Similarity=0.631 Sum_probs=7.3
Q ss_pred chhHhHHHHhh
Q 011943 451 PFRLVSFVAKY 461 (474)
Q Consensus 451 pfrlisfva~y 461 (474)
|.|+..|-.-|
T Consensus 255 Plr~~~~s~cf 265 (448)
T PLN02678 255 PIRYAGYSTCF 265 (448)
T ss_pred CceeEEecccc
Confidence 77777665555
No 466
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.47 E-value=1.6e+02 Score=32.78 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 176 Ee~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
+++|..|+.+.+.+.++...++.+|+.+++++.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~ 114 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNA 114 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 467
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.39 E-value=1.8e+02 Score=26.51 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
.+..+..++..|..|+..++.-+-++.+||-.|+=.-+.|+.++..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4556666666777777777777777777777665555555555554
No 468
>PHA02414 hypothetical protein
Probab=29.22 E-value=3.4e+02 Score=24.52 Aligned_cols=62 Identities=24% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 265 NLLQENRQLKENVSSLRSQLSSDESKKH-ATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 326 (474)
Q Consensus 265 sL~eEiq~LkeqIseL~~~iqtle~~~~-~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvn 326 (474)
.|...+..|+..+.++..++.--++++. +-=.+..|...++++....++=-.+--.++|+|=
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~ked~~KkD~vEkVf 95 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNKKEDTEKKDTVEKVF 95 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 4555666666666665555543322221 1123344444444444444444444456666654
No 469
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=29.11 E-value=8.9e+02 Score=27.47 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=52.9
Q ss_pred hhhhh--chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Q 011943 232 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGA 309 (474)
Q Consensus 232 LkkEI--sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d 309 (474)
.++.+ ..+....+++..-..|+..-.....++...+.++.+|..+|.++..+|... +..+ ... .+|.|
T Consensus 132 ~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~--~~~g-~~~-------NdLlD 201 (552)
T COG1256 132 ARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV--KAAG-NDP-------NDLLD 201 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCC-CCc-------hhHHH
Confidence 44444 455556667777777777777778888888888888888888888888765 2222 233 45555
Q ss_pred HHHHHHHHHHHHH
Q 011943 310 LIDKLITENIELV 322 (474)
Q Consensus 310 ~RK~LwrEnakL~ 322 (474)
.|..|..+=..++
T Consensus 202 qRD~Lv~eLs~~i 214 (552)
T COG1256 202 QRDQLVDELSQLI 214 (552)
T ss_pred HHHHHHHHHHhhc
Confidence 5555555533333
No 470
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=29.08 E-value=6.3e+02 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 255 QVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
+.+...+.+..|.+.|++|+.++..
T Consensus 229 eEkk~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 229 EEKKMKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666677777788888777653
No 471
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=28.88 E-value=2.6e+02 Score=24.00 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 265 NLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 265 sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
.|.++|.+|+..+..-+.+|..+ ..-+..|+..+....++-+.|-.+...+..
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rL------n~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRL------NILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666666666665555544 444555555555555555555555444443
No 472
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=28.85 E-value=3.2e+02 Score=24.62 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 244 GLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 244 sl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
.+..++..|+.+++..-+.+..+.+..+..
T Consensus 64 ~QGEqIkel~~e~k~qgktL~~I~~~L~~i 93 (102)
T PF01519_consen 64 KQGEQIKELQVEQKAQGKTLQLILKTLQSI 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333333
No 473
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.77 E-value=7.2e+02 Score=26.29 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=6.9
Q ss_pred hhhhhhhhh-chHHH
Q 011943 228 KDSWTQMES-VSKET 241 (474)
Q Consensus 228 RDsWLkkEI-sLke~ 241 (474)
|+.|+-.|- ....+
T Consensus 102 rEDWIEEECHRVEAQ 116 (305)
T PF15290_consen 102 REDWIEEECHRVEAQ 116 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455655555 44333
No 474
>PRK11020 hypothetical protein; Provisional
Probab=28.61 E-value=2.9e+02 Score=25.49 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhh
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 172 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkE 172 (474)
...|++|-+.++.+.+++.++.. + .-..-...+.+.++.++-+|..|+........++
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~-r--gd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske 61 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASL-R--GDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKE 61 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888654322 1 1222233444445555555555555444443333
No 475
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.49 E-value=2.5e+02 Score=22.85 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=23.2
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 011943 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 148 lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ 188 (474)
.++.+.+|.+++++........++.+.++..|+.+...++.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~ 45 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEK 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555555555555555555555444
No 476
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.41 E-value=5.3e+02 Score=24.64 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 011943 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkL 129 (474)
|+..||.-+.+=.+--..----....+..|+.++..++..+
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v 43 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEV 43 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666554443322222233444555555555555554
No 477
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.33 E-value=6e+02 Score=25.25 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
-+|+.++..+-+.++.-+.++..|+....-..+.++.....-.+.+.+...+..+-.....+|+.|+.....|
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777777777776666666666666666666666666666666666666665555444
No 478
>PF14282 FlxA: FlxA-like protein
Probab=28.01 E-value=2.4e+02 Score=24.74 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 011943 251 QLRMQVVELEE 261 (474)
Q Consensus 251 sLq~QV~~LEe 261 (474)
.|..++..|.+
T Consensus 23 ~L~~Qi~~Lq~ 33 (106)
T PF14282_consen 23 QLQKQIKQLQE 33 (106)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 479
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.78 E-value=4.9e+02 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~l 189 (474)
++.|+.......+....+...+..|+..+..+
T Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl 74 (136)
T PF04871_consen 43 EKELKEAEQAAEAELEELASEVKELEAEKEKL 74 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333444444444444443
No 480
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.72 E-value=1.8e+02 Score=32.48 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.6
Q ss_pred HHHhhcc
Q 011943 457 FVAKYVS 463 (474)
Q Consensus 457 fva~yvs 463 (474)
|+|-+++
T Consensus 327 ~~AG~l~ 333 (475)
T PRK13729 327 WGAGFVD 333 (475)
T ss_pred HHHHHHH
Confidence 3333333
No 481
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=27.71 E-value=67 Score=35.12 Aligned_cols=14 Identities=57% Similarity=0.776 Sum_probs=11.6
Q ss_pred CchHHHhhhhhhhh
Q 011943 1 MEDEKKKKRNKKKK 14 (474)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (474)
|+|+||||-+++||
T Consensus 178 ~qDe~KKKs~~~kN 191 (526)
T KOG3816|consen 178 MQDEKKKKSGSEKN 191 (526)
T ss_pred ccchhhhhhccccc
Confidence 89999988877764
No 482
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.70 E-value=6.6e+02 Score=25.47 Aligned_cols=166 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH------HHHhhhhHHHHHHHHHHHHHH-------------------HHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDL------HIQREGGLEMNIANLQSEKEF-------------------WLQK 192 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s------~~QkEa~LEe~IkqLq~EI~~-------------------llqK 192 (474)
+.|+.+.+.++++++.==..-...-++..+ ...-++.|-.+|+.||.--++ ....
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~I 83 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLI 83 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh------Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH------HH
Q 011943 193 EAALEQKISQLRDESAALNMKRASLEERLKLL------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVV------EL 259 (474)
Q Consensus 193 Ea~LeeeL~~L~~e~~~L~qKQ~~LEERisQF------KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~------~L 259 (474)
|..|+.==..=..-..-=|.|+|.. ....+ +.+=-.||+.=| .|...+..+..++.+|..... .-
T Consensus 84 E~~MErFK~vEkesKtKafSkeGL~--~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~ 161 (233)
T PF04065_consen 84 EEQMERFKVVEKESKTKAFSKEGLM--AASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTK 161 (233)
T ss_pred HHHHHHHHHHHHHhcccccchhhhh--cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHH
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIE 305 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiE 305 (474)
...+..|...+...+-=|..|+.-+.-++....-...+.+++.-++
T Consensus 162 ~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedie 207 (233)
T PF04065_consen 162 QERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIE 207 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
No 483
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=27.68 E-value=4.9e+02 Score=24.05 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------------hhhhhhhhhhhHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES----------------KKHATSEQKDFST 302 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~----------------~~~~~~E~~dLks 302 (474)
...+..++..+..|..+.-.=-.++..+-..+++|+++-..|...+..+|. -+.-..++.....
T Consensus 13 e~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~ 92 (120)
T PF10482_consen 13 EKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHL 92 (120)
T ss_pred HHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHH
Q ss_pred H----HHHHHHHHHHHHHHHHHHHhhh
Q 011943 303 Q----IEAAGALIDKLITENIELVEKV 325 (474)
Q Consensus 303 Q----iEal~d~RK~LwrEnakL~ekv 325 (474)
| |..+..++..|-.||-+|.+.|
T Consensus 93 qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 93 QSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
No 484
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.44 E-value=7.6e+02 Score=26.13 Aligned_cols=131 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHhhhhHHHH--
Q 011943 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLE----ETIKQLRNQNDLHIQ-- 170 (474)
Q Consensus 97 l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE----~kIkdLq~~~~s~~Q-- 170 (474)
|+.-|-.-...-.........-+.+++.+.-.|+-++=|+ .+|+.+...|..=...-+ ....+|....-.+..
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~-~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~ 81 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEK-SHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDP 81 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-HHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhcccc
Q ss_pred ---hhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-Hhhh
Q 011943 171 ---REGGLEMNIANLQSEKEF---WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EADK 228 (474)
Q Consensus 171 ---kEa~LEe~IkqLq~EI~~---llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF-KaER 228 (474)
....++..|++|+-|... +.++-.+++.+...+..++......-.+|..++..| ++-+
T Consensus 82 ~~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~ 146 (355)
T PF09766_consen 82 ELTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAK 146 (355)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
No 485
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.43 E-value=2.9e+02 Score=23.69 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
.++...|-.++..|+..+..|-.++..+ ..++..|++.=+-|+.-...|++
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~V------k~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEV------KEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
No 486
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.37 E-value=7.8e+02 Score=26.46 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred cccccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH---HHHHHh
Q 011943 56 VQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---EKVQAT 132 (474)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lk---qkLE~l 132 (474)
.|||.|..++.=.|.--.--.|-.--+||.-..+=+.-.+++++ +|+.+.+.=+.|-+..+.++ +..+..
T Consensus 309 ~dv~~~~~p~s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvke-------kE~elke~Ekel~~kf~~lkr~h~eEk~k 381 (406)
T KOG3859|consen 309 KDVDPDNKPFSLQETYEAKRNEFLGELQRKEEEMRQMFVQRVKE-------KEAELKEAEKELHEKFDRLKRLHQEEKKK 381 (406)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 011943 133 LEETIQQLQRQNDLRMQKEATLE 155 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE 155 (474)
+++++++|++++..+.++.+.++
T Consensus 382 le~~rr~Leee~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 382 LEEKRKQLEEEVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 487
>PLN02372 violaxanthin de-epoxidase
Probab=27.34 E-value=8.4e+02 Score=27.14 Aligned_cols=83 Identities=28% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHH
Q 011943 173 GGLEMNIANLQSEKEF-WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 251 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~-llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~s 251 (474)
..|+.++...+..|-. ..+-|.+++.+...+..+-..|++++ .|++.+..|+.+-..+++ .
T Consensus 364 ~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~f~~-----------------~ 425 (455)
T PLN02372 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRV-ALEEGLKELEQDEENFLK-----------------E 425 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-----------------h
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011943 252 LRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~L 273 (474)
|..+.+.+-+.+.--..+++.+
T Consensus 426 lskee~~~l~~~~~~~~~vek~ 447 (455)
T PLN02372 426 LSKEEKELLEKLKMEASEVEKL 447 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
No 488
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.15 E-value=6.1e+02 Score=24.91 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-----hhHHHHhhhhHHHHHHHHHHHHH
Q 011943 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ-----NDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~-----~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
..|..|+..+.-+... +...... .+++.....+-+....+...|..++.. .....---..|+..|........
T Consensus 18 ~~i~~l~~al~~L~~~-~~~~~~~-~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~ 95 (240)
T PF12795_consen 18 ALIQDLQQALSFLDEI-KKQKKRA-AEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQ 95 (240)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhh------hhchHHHHhhhHHHHHHHHHHHHHHHH
Q 011943 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM------ESVSKETIAGLSVDITQLRMQVVELEE 261 (474)
Q Consensus 188 ~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkk------EIsLke~Issl~~~~~sLq~QV~~LEe 261 (474)
.|...-+.+...|..+.+.-...-+-.. ...+-..+-+.-|.. ..-.......+..+...|..++..++.
T Consensus 96 ~~q~~l~~~~~~l~~~~~~p~~aq~~l~----~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~ 171 (240)
T PF12795_consen 96 ELQEQLQQENSQLIEIQTRPERAQQQLS----EARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQ 171 (240)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHH----HHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHH
Q 011943 262 SRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAA 307 (474)
Q Consensus 262 sl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal 307 (474)
.+.+...-..=++.+++.+..+++.+ ...+..|+..+...
T Consensus 172 el~s~~~rq~L~~~qrdl~~~~~~~l------~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 172 ELLSNNNRQELLQLQRDLLKARIQRL------QQQLQALQNLLNQK 211 (240)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
No 489
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.07 E-value=2.8e+02 Score=23.77 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhhhh--chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 232 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 232 LkkEI--sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+-.|. .|-..+..++..+..|...|...+++...|..+|+-|..=|..|
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.95 E-value=9.6e+02 Score=27.97 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 120 NECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK 199 (474)
Q Consensus 120 eEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Leee 199 (474)
.|...|..+=-.+++-+ .-|.--.+++|-++-.+-+.-.=|+.++.+..|...+|+++|..|+.|+..+.++...-+++
T Consensus 301 rEVeNLilENsqLLetK-NALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 301 REVENLILENSQLLETK-NALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHhhHHHHhhh-hHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHh
Q 011943 200 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIA 243 (474)
Q Consensus 200 L~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Is 243 (474)
-.+-.+-.--..|...+.--...+.--||+.+--+=+.|++.|.
T Consensus 380 ~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 380 AKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred hcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 491
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.79 E-value=9.3e+02 Score=26.93 Aligned_cols=162 Identities=19% Similarity=0.132 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQN-DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~-~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI 186 (474)
.......+..-+.+-..+....+.-..+.++++..+. ..+.+....++..+++-+.+ ..+++..|..+-.+|....
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r---L~qrE~rL~qRee~Lekr~ 96 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE---LQRLERRLLQREETLDRKM 96 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhh---hHHHHHHHHHHHHHHHHHH
Q 011943 187 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG---LSVDITQLRMQVVELEESR 263 (474)
Q Consensus 187 ~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Iss---l~~~~~sLq~QV~~LEesl 263 (474)
..+.+++..|..+-..|......|..+.. +...+..++..-|-+=-.|...-.. ++.....++.+...+=..+
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~----e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~ 172 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEE----ELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEI 172 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 011943 264 NNLLQENRQLKEN 276 (474)
Q Consensus 264 ~sL~eEiq~Lkeq 276 (474)
..--.+...-+..
T Consensus 173 ~~~~~~~a~~~a~ 185 (514)
T TIGR03319 173 EEEAKEEADKKAK 185 (514)
T ss_pred HHHHHHHHHHHHH
No 492
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=2.8e+02 Score=28.92 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 131 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (474)
Q Consensus 131 ~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Le 197 (474)
..+.|+|.-|+.-....=|.+-...-.|-+|+-..++..+-+..+.+...+|+.++...++.-+.|+
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=26.65 E-value=15 Score=33.14 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCCCCcCCCchhHh
Q 011943 442 LTDAPLIGAPFRLV 455 (474)
Q Consensus 442 ~~dap~igapfrli 455 (474)
|.|+=+||.|||++
T Consensus 76 ~~~~dliGiP~~I~ 89 (128)
T cd02426 76 LDKYDEMGVLFTLL 89 (128)
T ss_pred HHhhhhcCCCEEEE
No 494
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.51 E-value=1.9e+02 Score=34.34 Aligned_cols=146 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--Hhhhhhhhhhh
Q 011943 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQME 235 (474)
Q Consensus 158 IkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF--KaERDsWLkkE 235 (474)
+.++.+....+.+.-..+...-..++...+.+.+.-+..+..+.....+.....+.-.++-.+++-+ +-..+. .|
T Consensus 430 ~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~---~e 506 (847)
T KOG0998|consen 430 VLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDN---RE 506 (847)
T ss_pred cccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccch---hh
Q ss_pred h-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 011943 236 S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALID 312 (474)
Q Consensus 236 I-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK 312 (474)
| .+...|..+..+...|...|...+..+.++..++..+...+.........+ ..-+.......+.+...++
T Consensus 507 i~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l------~~~~~~~~~~~~~~~~~~k 578 (847)
T KOG0998|consen 507 ISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLL------DDSFKVGMELFEQLLKGSK 578 (847)
T ss_pred HHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhh------hhhhhhhhhhhhhhhhhhh
No 495
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.44 E-value=3.6e+02 Score=22.08 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 201 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSK-----ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (474)
Q Consensus 201 ~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLk-----e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lk 274 (474)
++.........+.....+.++..+...++.+ ...+ ... ..+.....-+..|...+..++..+..+..++...+
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEY-QEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 275 ENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 275 eqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
..+.....+...+ +-+.+.+..-|+....-.|
T Consensus 80 ~~l~~a~~~~k~~-----------------e~L~e~~~~~~~~~~~r~E 111 (123)
T PF02050_consen 80 EELQEARRERKKL-----------------EKLKERRREEYQQEEERRE 111 (123)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
No 496
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.01 E-value=4.9e+02 Score=23.43 Aligned_cols=69 Identities=23% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
+-..-.+|+..+.-++..+ -.=+.....+...+-..|-.|+.+..++++..=+...|..++..||.+++
T Consensus 3 la~eYsKLraQ~~vLKKaV--------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAV--------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=25.94 E-value=6.2e+02 Score=24.60 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHh-hhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 122 CDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR-EGGL-EMNIANLQSEKEFWLQKEAALEQK 199 (474)
Q Consensus 122 i~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Qk-Ea~L-Ee~IkqLq~EI~~llqKEa~Leee 199 (474)
+......++...... |..+.+...+....+|-..+++.......-+. ...| .....-|...|..|..+-.++..+
T Consensus 24 ~~~~~kqve~~~l~~---lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~ 100 (165)
T PF09602_consen 24 FASFMKQVEQQTLKK---LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAK 100 (165)
T ss_pred HHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-----HHHHHhhhhHHHHHHHh----Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHH
Q 011943 200 ISQLRDES-----AALNMKRASLEERLKLL----EADKDSWTQMES-VSKETIAGLSVDITQLRM 254 (474)
Q Consensus 200 L~~L~~e~-----~~L~qKQ~~LEERisQF----KaERDsWLkkEI-sLke~Issl~~~~~sLq~ 254 (474)
|.+|.-.. +.|.+=.+.+||=+.+| +--|..|.+..- -++..-+++..-..++.+
T Consensus 101 i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~k~~q~~~~~~fe~ 165 (165)
T PF09602_consen 101 IQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQAKSSQKELAKKFEE 165 (165)
T ss_pred HHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 498
>PRK00846 hypothetical protein; Provisional
Probab=25.45 E-value=3.2e+02 Score=23.29 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Q 011943 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGA 309 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d 309 (474)
.+...+..|+..+.-.+..|+.|...|...+..+..+ ...+.-|..++.++..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L------~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARN------AELIRHLLEDLGKVRS 62 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
No 499
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=25.41 E-value=43 Score=28.54 Aligned_cols=19 Identities=53% Similarity=0.747 Sum_probs=0.0
Q ss_pred CCCCCcCCCchhHhHHHHhhc
Q 011943 442 LTDAPLIGAPFRLVSFVAKYV 462 (474)
Q Consensus 442 ~~dap~igapfrlisfva~yv 462 (474)
+.+-|+ ||||.|-|||+-|
T Consensus 1 ll~l~l--aPvrgv~wv~e~I 19 (79)
T PF05120_consen 1 LLDLPL--APVRGVVWVAEQI 19 (79)
T ss_pred Cccccc--chHHHHHHHHHHH
No 500
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.02 E-value=8.3e+02 Score=25.75 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATL-EETIKQLRNQNDLHIQREGGLEMNIANLQSE 185 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~l-E~kIkdLq~~~~s~~QkEa~LEe~IkqLq~E 185 (474)
|+-+......+|+.++.++-+.----..+.++.|+..++.-++.---. |..+...+.+....+++-.
T Consensus 36 keq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk------------ 103 (291)
T KOG4466|consen 36 KEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAK------------ 103 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhh
Q 011943 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 231 (474)
Q Consensus 186 I~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsW 231 (474)
..++.++..|.+-+ .+.||||+.+++.+|.++
T Consensus 104 --------~e~E~~~~lLke~l------~seleeKkrkieeeR~sm 135 (291)
T KOG4466|consen 104 --------KEYESKKKLLKENL------ISELEEKKRKIEEERLSM 135 (291)
T ss_pred --------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhh
Done!