Query 011943
Match_columns 474
No_of_seqs 61 out of 63
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.8 5.5E-05 1.9E-09 68.4 35.8 35 294-328 229-263 (284)
2 1c1g_A Tropomyosin; contractIl 98.8 4.9E-05 1.7E-09 68.7 33.1 39 294-332 236-274 (284)
3 1i84_S Smooth muscle myosin he 98.2 4.2E-07 1.4E-11 104.2 3.9 26 303-328 1138-1163(1184)
4 1i84_S Smooth muscle myosin he 98.2 2.3E-06 7.8E-11 98.1 9.8 13 84-96 818-830 (1184)
5 3na7_A HP0958; flagellar bioge 97.6 0.011 3.9E-07 56.9 21.1 81 234-323 97-179 (256)
6 2v71_A Nuclear distribution pr 97.5 0.019 6.5E-07 54.2 20.7 164 138-333 13-178 (189)
7 3o0z_A RHO-associated protein 97.3 0.034 1.2E-06 51.7 19.8 134 111-267 4-138 (168)
8 2v71_A Nuclear distribution pr 97.2 0.029 9.9E-07 53.0 18.4 109 125-236 39-153 (189)
9 3na7_A HP0958; flagellar bioge 96.9 0.15 5E-06 49.1 21.1 84 234-326 90-174 (256)
10 2dfs_A Myosin-5A; myosin-V, in 96.5 0.031 1.1E-06 64.2 15.4 70 233-311 976-1046(1080)
11 3oja_B Anopheles plasmodium-re 96.0 0.089 3.1E-06 54.8 14.5 77 251-333 506-582 (597)
12 3vkg_A Dynein heavy chain, cyt 95.8 2.9 9.8E-05 53.4 28.5 95 189-283 2012-2106(3245)
13 2fxo_A Myosin heavy chain, car 95.7 0.84 2.9E-05 40.0 17.2 42 151-192 15-56 (129)
14 2jee_A YIIU; FTSZ, septum, coi 95.3 0.087 3E-06 43.7 8.7 54 234-287 20-74 (81)
15 3vkg_A Dynein heavy chain, cyt 95.0 5.5 0.00019 50.9 27.1 100 237-342 2011-2110(3245)
16 2dfs_A Myosin-5A; myosin-V, in 94.8 0.68 2.3E-05 53.3 17.4 30 258-287 1020-1049(1080)
17 3oja_B Anopheles plasmodium-re 94.2 0.58 2E-05 48.7 13.9 64 152-215 512-575 (597)
18 2efr_A General control protein 93.7 4.1 0.00014 37.3 19.8 85 97-189 26-110 (155)
19 3o0z_A RHO-associated protein 93.3 5.2 0.00018 37.2 19.4 87 197-287 47-137 (168)
20 3ol1_A Vimentin; structural ge 92.4 4.1 0.00014 35.3 14.2 89 88-191 16-104 (119)
21 3ghg_A Fibrinogen alpha chain; 92.3 1.3 4.4E-05 47.6 12.8 42 237-278 114-155 (562)
22 2jee_A YIIU; FTSZ, septum, coi 92.2 1.7 6E-05 35.9 10.9 67 135-201 6-72 (81)
23 2v66_B Nuclear distribution pr 92.0 4.2 0.00014 35.4 13.6 68 112-180 34-101 (111)
24 2fxo_A Myosin heavy chain, car 91.4 6.7 0.00023 34.2 17.5 101 110-218 10-110 (129)
25 3ol1_A Vimentin; structural ge 91.3 4.9 0.00017 34.8 13.4 88 108-210 15-102 (119)
26 2efr_A General control protein 89.2 13 0.00044 33.9 22.2 19 189-207 68-86 (155)
27 3swk_A Vimentin; cytoskeleton, 88.2 5.5 0.00019 32.8 10.7 56 154-209 26-81 (86)
28 3u1c_A Tropomyosin alpha-1 cha 87.9 11 0.00038 31.6 14.5 24 140-163 14-37 (101)
29 3a7p_A Autophagy protein 16; c 87.8 4.2 0.00014 37.2 10.6 63 255-323 69-131 (152)
30 2v66_B Nuclear distribution pr 87.2 14 0.00049 32.1 15.0 37 174-210 53-89 (111)
31 3q8t_A Beclin-1; autophagy, AT 85.9 14 0.00049 30.9 14.3 79 116-195 7-85 (96)
32 3bas_A Myosin heavy chain, str 85.8 11 0.00036 31.1 11.2 46 111-157 12-57 (89)
33 1f5n_A Interferon-induced guan 85.6 21 0.00071 38.6 16.4 34 209-242 516-554 (592)
34 3u1c_A Tropomyosin alpha-1 cha 85.5 15 0.00052 30.8 14.3 66 138-210 26-91 (101)
35 1z2t_A Anchor peptide Ser65-Le 85.0 0.3 1E-05 31.9 1.1 13 451-463 4-16 (26)
36 3ghg_C Fibrinogen gamma chain; 84.4 9.1 0.00031 39.9 12.4 91 189-282 29-119 (411)
37 3swk_A Vimentin; cytoskeleton, 84.1 15 0.00052 30.1 11.4 51 140-190 33-83 (86)
38 2avr_X Adhesion A; antiparalle 83.4 22 0.00077 31.3 12.6 91 174-280 6-101 (119)
39 3hnw_A Uncharacterized protein 82.7 3.9 0.00013 36.5 7.7 45 241-285 83-127 (138)
40 3oja_A Leucine-rich immune mol 82.7 22 0.00075 36.2 14.4 30 294-323 455-484 (487)
41 3tnu_B Keratin, type II cytosk 82.4 7.6 0.00026 33.7 9.4 58 229-286 10-68 (129)
42 3mq9_A Bone marrow stromal ant 82.2 14 0.0005 37.3 12.8 58 227-287 397-455 (471)
43 3u59_A Tropomyosin beta chain; 81.3 22 0.00077 29.6 14.0 23 140-162 14-36 (101)
44 3tnu_A Keratin, type I cytoske 80.9 6.7 0.00023 34.2 8.5 58 229-286 12-70 (131)
45 1m1j_C Fibrinogen gamma chain; 80.8 8.5 0.00029 40.0 10.6 94 189-285 29-122 (409)
46 3s4r_A Vimentin; alpha-helix, 80.6 24 0.00081 29.4 11.4 34 175-208 54-87 (93)
47 3tnu_A Keratin, type I cytoske 80.5 12 0.0004 32.7 9.9 56 232-287 36-96 (131)
48 1ic2_A Tropomyosin alpha chain 80.2 14 0.00047 29.8 9.5 62 218-279 5-66 (81)
49 2v4h_A NF-kappa-B essential mo 80.0 11 0.00039 32.7 9.4 25 304-328 78-102 (110)
50 3tnu_B Keratin, type II cytosk 79.5 15 0.00051 31.8 10.2 56 232-287 34-94 (129)
51 3q8t_A Beclin-1; autophagy, AT 79.3 27 0.00091 29.2 13.1 46 179-224 6-51 (96)
52 3ghg_A Fibrinogen alpha chain; 77.8 16 0.00053 39.4 11.5 23 107-129 51-73 (562)
53 3u59_A Tropomyosin beta chain; 76.0 33 0.0011 28.6 14.3 27 138-164 26-52 (101)
54 1x79_B RAB GTPase binding effe 76.0 14 0.00046 32.3 8.8 23 300-322 82-104 (112)
55 2eqb_B RAB guanine nucleotide 74.7 31 0.0011 29.4 10.4 14 316-329 76-89 (97)
56 2ocy_A RAB guanine nucleotide 74.5 51 0.0018 30.1 18.0 24 105-128 12-35 (154)
57 3a7p_A Autophagy protein 16; c 74.3 41 0.0014 30.8 11.8 33 179-211 98-130 (152)
58 2xdj_A Uncharacterized protein 74.2 19 0.00066 29.6 8.9 60 154-213 4-63 (83)
59 3mq7_A Bone marrow stromal ant 73.1 34 0.0011 30.2 10.5 30 294-323 77-106 (121)
60 3trt_A Vimentin; cytoskeleton, 73.1 25 0.00086 27.5 9.1 50 225-274 26-76 (77)
61 1deq_A Fibrinogen (alpha chain 71.9 31 0.0011 35.7 11.7 23 255-277 135-157 (390)
62 3hnw_A Uncharacterized protein 71.8 54 0.0018 29.1 13.8 20 80-100 28-47 (138)
63 3bas_A Myosin heavy chain, str 70.7 42 0.0014 27.4 11.7 39 154-192 19-57 (89)
64 3mq9_A Bone marrow stromal ant 70.2 95 0.0032 31.3 14.9 24 255-278 444-467 (471)
65 3cvf_A Homer-3, homer protein 70.0 22 0.00074 29.2 8.2 50 154-203 25-74 (79)
66 2v4h_A NF-kappa-B essential mo 69.7 55 0.0019 28.5 11.0 51 235-285 25-79 (110)
67 1deq_A Fibrinogen (alpha chain 69.0 95 0.0033 32.2 14.4 116 58-200 42-157 (390)
68 1m1j_A Fibrinogen alpha subuni 68.4 84 0.0029 33.4 14.1 97 189-289 56-153 (491)
69 1m1j_B Fibrinogen beta chain; 67.1 1E+02 0.0035 32.6 14.7 24 189-212 91-114 (464)
70 2no2_A HIP-I, huntingtin-inter 66.9 60 0.002 27.7 14.0 20 194-213 47-66 (107)
71 3cve_A Homer protein homolog 1 66.8 45 0.0015 26.9 9.3 17 298-314 49-65 (72)
72 1go4_E MAD1 (mitotic arrest de 65.5 27 0.00093 29.8 8.2 74 255-328 13-94 (100)
73 2b9c_A Striated-muscle alpha t 65.4 77 0.0026 28.4 14.8 88 108-203 47-141 (147)
74 1wt6_A Myotonin-protein kinase 64.8 22 0.00075 29.5 7.2 45 237-281 28-72 (81)
75 3vmx_A Voltage-gated hydrogen 64.7 20 0.00068 27.0 6.3 40 239-278 3-42 (48)
76 2zqm_A Prefoldin beta subunit 64.6 58 0.002 26.8 10.7 40 239-278 69-108 (117)
77 3nmd_A CGMP dependent protein 64.6 15 0.00053 29.7 6.1 42 239-280 25-66 (72)
78 3i00_A HIP-I, huntingtin-inter 64.2 22 0.00074 31.2 7.5 10 319-328 109-118 (120)
79 1gd2_E Transcription factor PA 63.4 12 0.00042 29.9 5.4 43 244-286 26-68 (70)
80 2oqq_A Transcription factor HY 63.3 17 0.00058 26.7 5.5 38 240-277 3-40 (42)
81 3s4r_A Vimentin; alpha-helix, 63.2 64 0.0022 26.7 12.0 35 154-188 54-88 (93)
82 3jsv_C NF-kappa-B essential mo 62.4 54 0.0018 27.8 9.3 78 238-328 7-87 (94)
83 1joc_A EEA1, early endosomal a 60.2 24 0.00081 30.6 7.1 37 225-261 3-39 (125)
84 1l8d_A DNA double-strand break 59.8 72 0.0025 26.2 12.1 37 242-278 66-102 (112)
85 3he5_B Synzip2; heterodimeric 58.4 36 0.0012 25.3 6.6 31 139-169 21-51 (52)
86 4emc_A Monopolin complex subun 58.2 38 0.0013 32.0 8.5 48 238-285 11-58 (190)
87 2ocy_A RAB guanine nucleotide 55.4 1.2E+02 0.0042 27.6 19.2 36 175-210 56-91 (154)
88 3ghg_B Fibrinogen beta chain; 54.9 1.1E+02 0.0039 32.3 12.4 95 189-287 86-182 (461)
89 2no2_A HIP-I, huntingtin-inter 54.4 1E+02 0.0035 26.3 11.6 29 182-210 73-101 (107)
90 3nmd_A CGMP dependent protein 54.2 27 0.00092 28.3 5.9 32 256-287 21-52 (72)
91 1ic2_A Tropomyosin alpha chain 53.8 83 0.0028 25.1 11.0 56 137-206 8-63 (81)
92 3cvf_A Homer-3, homer protein 53.8 61 0.0021 26.6 8.0 17 298-314 55-71 (79)
93 1fxk_A Prefoldin; archaeal pro 53.3 89 0.003 25.3 10.3 40 238-277 63-102 (107)
94 2xdj_A Uncharacterized protein 53.2 76 0.0026 26.0 8.6 34 237-270 24-57 (83)
95 3jsv_C NF-kappa-B essential mo 52.8 92 0.0032 26.4 9.2 86 248-336 3-88 (94)
96 2w83_C C-JUN-amino-terminal ki 52.3 82 0.0028 25.8 8.5 49 138-186 26-74 (77)
97 2zqm_A Prefoldin beta subunit 51.6 99 0.0034 25.3 10.9 40 295-334 70-109 (117)
98 3a2a_A Voltage-gated hydrogen 51.3 30 0.001 26.9 5.4 40 239-278 10-49 (58)
99 3htk_A Structural maintenance 51.3 61 0.0021 24.1 7.2 48 251-304 9-56 (60)
100 3iv1_A Tumor susceptibility ge 49.7 76 0.0026 26.0 7.9 44 217-260 16-59 (78)
101 2e7s_A RAB guanine nucleotide 49.3 53 0.0018 29.4 7.6 17 112-128 7-23 (135)
102 3i00_A HIP-I, huntingtin-inter 49.1 78 0.0027 27.6 8.5 20 114-133 16-35 (120)
103 1m1j_B Fibrinogen beta chain; 47.3 2.8E+02 0.0095 29.3 16.1 18 111-128 98-115 (464)
104 3he5_B Synzip2; heterodimeric 46.9 55 0.0019 24.3 6.0 40 89-128 7-46 (52)
105 1go4_E MAD1 (mitotic arrest de 46.4 34 0.0011 29.3 5.6 38 193-230 14-53 (100)
106 2e7s_A RAB guanine nucleotide 46.0 38 0.0013 30.4 6.1 31 155-185 45-75 (135)
107 1jcd_A Major outer membrane li 45.7 62 0.0021 24.6 6.4 11 294-304 38-48 (52)
108 4gkw_A Spindle assembly abnorm 44.5 1.8E+02 0.0062 26.3 18.4 133 186-325 13-156 (167)
109 1f5n_A Interferon-induced guan 44.3 3.3E+02 0.011 29.3 17.3 8 252-259 572-579 (592)
110 1t2k_D Cyclic-AMP-dependent tr 43.9 63 0.0022 24.4 6.3 25 251-275 26-50 (61)
111 1wt6_A Myotonin-protein kinase 43.6 1.2E+02 0.0041 25.1 8.3 63 94-164 12-74 (81)
112 2wt7_A Proto-oncogene protein 42.4 68 0.0023 24.6 6.3 30 250-279 26-55 (63)
113 3uux_B Mitochondrial division 41.7 1.8E+02 0.0062 28.3 10.6 16 172-187 207-222 (242)
114 1wle_A Seryl-tRNA synthetase; 40.6 1.2E+02 0.0041 32.2 9.9 34 241-274 71-104 (501)
115 1x8y_A Lamin A/C; structural p 39.5 1.2E+02 0.0042 24.6 7.8 27 254-280 28-54 (86)
116 3vp9_A General transcriptional 38.6 79 0.0027 26.6 6.6 60 245-306 26-86 (92)
117 1l8d_A DNA double-strand break 38.5 1.6E+02 0.0055 24.0 13.4 26 138-163 20-45 (112)
118 3qh9_A Liprin-beta-2; coiled-c 37.2 1.6E+02 0.0056 24.3 8.1 33 248-280 27-59 (81)
119 2oqq_A Transcription factor HY 37.2 90 0.0031 22.9 5.8 14 175-188 22-35 (42)
120 4etp_A Kinesin-like protein KA 36.8 57 0.0019 33.4 6.6 30 294-323 30-59 (403)
121 1lwu_C Fibrinogen gamma chain; 36.5 61 0.0021 32.6 6.7 30 251-280 9-38 (323)
122 3ghg_B Fibrinogen beta chain; 36.0 3.5E+02 0.012 28.6 12.5 40 79-120 84-123 (461)
123 2xnx_M M protein, M1-BC1; cell 36.0 2E+02 0.0067 26.2 9.2 42 232-273 64-106 (146)
124 3c9i_A Tail needle protein GP2 35.9 3.1E+02 0.01 26.5 11.2 22 45-66 13-34 (242)
125 1ci6_A Transcription factor AT 35.5 1E+02 0.0036 23.6 6.4 25 258-282 27-51 (63)
126 4fla_A Regulation of nuclear P 35.5 2E+02 0.0069 25.8 9.3 47 85-131 79-125 (152)
127 1ses_A Seryl-tRNA synthetase; 35.3 3.1E+02 0.011 28.1 11.9 30 136-165 29-58 (421)
128 3hhm_B NISH2 P85alpha; PI3KCA, 34.7 2.2E+02 0.0076 28.9 10.5 36 173-208 222-257 (373)
129 4h22_A Leucine-rich repeat fli 34.3 2.2E+02 0.0076 24.4 9.3 35 245-279 21-55 (103)
130 1t2k_D Cyclic-AMP-dependent tr 34.2 1E+02 0.0035 23.3 6.1 26 256-281 24-49 (61)
131 1x79_B RAB GTPase binding effe 34.1 2.3E+02 0.0079 24.5 13.2 22 115-136 8-29 (112)
132 4emc_A Monopolin complex subun 33.9 1.6E+02 0.0053 27.9 8.5 13 408-420 128-140 (190)
133 2lw1_A ABC transporter ATP-bin 33.9 1.5E+02 0.0052 23.9 7.5 26 253-278 21-46 (89)
134 3he4_A Synzip6; heterodimeric 33.1 73 0.0025 24.0 4.9 42 228-269 11-53 (56)
135 2dq0_A Seryl-tRNA synthetase; 33.0 1.1E+02 0.0038 31.8 8.2 33 241-273 32-64 (455)
136 1nkp_B MAX protein, MYC proto- 32.9 43 0.0015 26.6 4.0 32 249-280 49-80 (83)
137 1m1j_C Fibrinogen gamma chain; 32.8 4.3E+02 0.015 27.3 14.0 6 63-68 18-23 (409)
138 1ses_A Seryl-tRNA synthetase; 32.6 1.9E+02 0.0065 29.6 9.8 37 248-284 65-101 (421)
139 1jnm_A Proto-oncogene C-JUN; B 32.5 70 0.0024 24.3 5.0 22 259-280 27-48 (62)
140 3cl3_D NF-kappa-B essential mo 31.6 1.2E+02 0.0042 27.0 7.0 101 118-236 7-107 (130)
141 3s9g_A Protein hexim1; cyclin 31.5 1.8E+02 0.0061 25.0 7.6 49 231-279 35-90 (104)
142 2yy0_A C-MYC-binding protein; 31.2 88 0.003 23.5 5.2 31 247-277 19-49 (53)
143 3qne_A Seryl-tRNA synthetase, 30.7 1.5E+02 0.005 31.5 8.6 34 240-273 33-66 (485)
144 1fxk_C Protein (prefoldin); ar 30.6 2.4E+02 0.0083 23.7 11.9 34 175-208 6-39 (133)
145 2wt7_A Proto-oncogene protein 30.4 1.2E+02 0.0042 23.1 6.1 19 259-277 28-46 (63)
146 1dh3_A Transcription factor CR 29.6 84 0.0029 23.6 4.9 30 255-284 23-52 (55)
147 2i1j_A Moesin; FERM, coiled-co 29.3 91 0.0031 33.4 6.9 34 240-273 412-445 (575)
148 3etw_A Adhesin A; antiparallel 28.7 3E+02 0.01 24.1 12.4 90 175-280 7-101 (119)
149 3vp9_A General transcriptional 28.6 89 0.003 26.3 5.3 17 90-106 12-28 (92)
150 1jnm_A Proto-oncogene C-JUN; B 27.9 1E+02 0.0036 23.3 5.2 35 247-281 22-56 (62)
151 3u06_A Protein claret segregat 27.9 1E+02 0.0035 31.7 6.8 31 294-324 30-60 (412)
152 2dq0_A Seryl-tRNA synthetase; 27.8 2.8E+02 0.0097 28.7 10.2 75 252-329 29-103 (455)
153 2lw1_A ABC transporter ATP-bin 27.6 2.4E+02 0.0082 22.6 9.3 27 260-286 21-47 (89)
154 3a7o_A Autophagy protein 16; c 27.2 2.5E+02 0.0086 22.8 7.6 39 156-194 32-70 (75)
155 2dq3_A Seryl-tRNA synthetase; 27.1 3.1E+02 0.011 28.1 10.2 74 253-329 29-102 (425)
156 1fxk_C Protein (prefoldin); ar 27.0 2.8E+02 0.0097 23.3 12.6 38 173-210 91-128 (133)
157 2q6q_A Spindle POLE BODY compo 27.0 2.2E+02 0.0074 23.0 7.0 55 269-329 4-58 (74)
158 3mxz_A Tubulin-specific chaper 26.9 3.1E+02 0.01 23.7 12.3 49 218-266 35-86 (116)
159 1wle_A Seryl-tRNA synthetase; 26.6 5.9E+02 0.02 26.9 13.1 32 113-152 70-101 (501)
160 1fxk_A Prefoldin; archaeal pro 26.4 2.5E+02 0.0086 22.5 10.8 36 297-332 67-102 (107)
161 3ghg_C Fibrinogen gamma chain; 26.2 5.2E+02 0.018 26.9 11.7 46 241-286 92-137 (411)
162 4h22_A Leucine-rich repeat fli 26.2 3.1E+02 0.011 23.5 9.7 56 138-207 19-74 (103)
163 1kd8_B GABH BLL, GCN4 acid bas 26.2 1.1E+02 0.0037 21.8 4.5 31 137-167 3-33 (36)
164 2akf_A Coronin-1A; coiled coil 26.1 94 0.0032 21.3 4.0 25 259-283 4-28 (32)
165 2w83_C C-JUN-amino-terminal ki 25.7 2.8E+02 0.0094 22.7 8.9 10 319-328 61-70 (77)
166 2i1j_A Moesin; FERM, coiled-co 25.5 44 0.0015 35.8 3.7 51 138-188 373-423 (575)
167 2oto_A M protein; helical coil 25.3 3.4E+02 0.012 23.7 16.3 45 182-226 34-78 (155)
168 1j1d_B Troponin T, TNT; THIN f 24.8 3.2E+02 0.011 23.3 8.6 34 133-166 54-87 (106)
169 1qsd_A Protein (beta-tubulin b 24.8 2.6E+02 0.0088 23.7 7.6 45 218-262 31-79 (106)
170 1m1j_A Fibrinogen alpha subuni 24.7 6.6E+02 0.023 26.8 13.2 93 59-171 41-133 (491)
171 1avy_A Fibritin, gpwac M; bact 24.7 1.4E+02 0.0047 24.3 5.4 34 254-287 8-41 (74)
172 3he5_A Synzip1; heterodimeric 24.6 2.1E+02 0.0072 21.0 6.2 19 152-170 6-24 (49)
173 3mov_A Lamin-B1; LMNB1, B-type 24.4 1.8E+02 0.0061 24.2 6.5 69 237-314 9-77 (95)
174 2w6a_A ARF GTPase-activating p 24.2 1.3E+02 0.0046 23.6 5.1 50 200-255 12-63 (63)
175 1ci6_A Transcription factor AT 24.2 2E+02 0.0069 22.0 6.3 9 265-273 48-56 (63)
176 2akf_A Coronin-1A; coiled coil 24.0 71 0.0024 21.9 3.1 29 243-271 2-30 (32)
177 1kd8_A GABH AIV, GCN4 acid bas 23.9 89 0.003 22.2 3.7 30 138-167 4-33 (36)
178 1nkp_A C-MYC, MYC proto-oncoge 23.7 1E+02 0.0035 25.1 4.8 33 249-281 54-86 (88)
179 1ik9_A DNA repair protein XRCC 23.4 4.7E+02 0.016 24.6 11.8 49 118-167 151-200 (213)
180 3trt_A Vimentin; cytoskeleton, 23.1 2.6E+02 0.0089 21.6 10.9 15 128-142 28-42 (77)
181 3he5_A Synzip1; heterodimeric 23.0 1.7E+02 0.006 21.4 5.3 9 154-162 36-44 (49)
182 3ljm_A Coil Ser L9C; de novo d 23.0 98 0.0034 20.9 3.6 23 110-132 5-27 (31)
183 1avy_A Fibritin, gpwac M; bact 22.8 79 0.0027 25.6 3.7 39 237-275 5-43 (74)
184 1uii_A Geminin; human, DNA rep 22.7 2.4E+02 0.0081 23.4 6.7 18 267-284 45-62 (83)
185 3gp4_A Transcriptional regulat 22.7 3.7E+02 0.013 23.2 9.5 31 173-203 84-114 (142)
186 2nrj_A HBL B protein; enteroto 22.5 5.8E+02 0.02 25.4 15.5 46 241-286 251-296 (346)
187 3qne_A Seryl-tRNA synthetase, 22.5 4.8E+02 0.016 27.5 10.8 30 114-151 34-63 (485)
188 1fzc_C Fibrin; blood coagulati 22.5 60 0.002 32.7 3.7 44 242-285 6-49 (319)
189 1gd2_E Transcription factor PA 22.3 1.1E+02 0.0038 24.3 4.5 17 294-310 49-65 (70)
190 1uii_A Geminin; human, DNA rep 22.1 1.8E+02 0.0062 24.1 5.9 32 247-278 46-77 (83)
191 2l5g_B Putative uncharacterize 21.3 2E+02 0.0068 21.1 5.2 32 174-205 6-37 (42)
192 3lss_A Seryl-tRNA synthetase; 21.3 3.2E+02 0.011 28.9 9.1 36 240-275 37-72 (484)
193 1x4t_A Hypothetical protein LO 21.0 3.7E+02 0.013 22.6 8.4 65 61-137 11-75 (92)
194 2nnu_B HUNK1 protein, bromodom 21.0 49 0.0017 21.9 1.8 16 79-94 6-21 (26)
195 3c3f_A Alpha/beta peptide with 20.9 1.2E+02 0.004 21.3 3.8 27 137-163 3-29 (34)
196 2zdi_C Prefoldin subunit alpha 20.8 3.1E+02 0.011 23.7 7.7 107 175-285 7-143 (151)
197 1y1u_A Signal transducer and a 20.7 8.3E+02 0.028 26.5 13.6 30 258-287 147-176 (585)
198 2aze_B Transcription factor E2 20.5 1.6E+02 0.0053 25.0 5.4 36 176-211 5-40 (106)
199 4fla_A Regulation of nuclear P 20.5 4.6E+02 0.016 23.4 9.4 64 260-333 78-141 (152)
200 2eqb_B RAB guanine nucleotide 20.4 3.9E+02 0.013 22.6 13.9 16 263-278 78-93 (97)
201 2dgc_A Protein (GCN4); basic d 20.0 1.4E+02 0.0047 23.1 4.5 25 249-273 32-56 (63)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.84 E-value=5.5e-05 Score=68.43 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=15.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL 328 (474)
......+..++..+...+..+-.+-..+.+.+..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (284)
T 1c1g_A 229 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.81 E-value=4.9e-05 Score=68.74 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=15.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
...+..+..++..+......+-.+-..+..+.+.+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
T 1c1g_A 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333333344443333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.23 E-value=4.2e-07 Score=104.18 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 303 QIEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 303 QiEal~d~RK~LwrEnakL~ekvneL 328 (474)
++..+...+..|+++-..|.+.+.+|
T Consensus 1138 ~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1138 ARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444444
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.23 E-value=2.3e-06 Score=98.15 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 011943 84 REAMAILEETVKH 96 (474)
Q Consensus 84 ~e~~~~~eeti~~ 96 (474)
+.|.-+++-.+|.
T Consensus 818 ~~a~~~iQ~~~r~ 830 (1184)
T 1i84_S 818 LESIFCIQYNVRS 830 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4565556665555
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.56 E-value=0.011 Score=56.89 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=42.9
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALID 312 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK 312 (474)
+|| .++..+..+...+..+..++..++..+..+...+..+...+......+. ..+.+++.++..+...|.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~---------~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE---------NEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 444 5555555555555555555555555444444444444444444433333 346666777777777777
Q ss_pred HHHHH-HHHHHh
Q 011943 313 KLITE-NIELVE 323 (474)
Q Consensus 313 ~LwrE-nakL~e 323 (474)
.|-.. ++.|..
T Consensus 168 ~l~~~i~~~lL~ 179 (256)
T 3na7_A 168 DLVEKTEPKIYS 179 (256)
T ss_dssp HHHHTSCHHHHH
T ss_pred HHHhcCCHHHHH
Confidence 66555 444444
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.47 E-value=0.019 Score=54.22 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~L 217 (474)
..-........+....++..+.+|+. +..+-++.|+.+|.+++..+..+..+-+.+..++..+..+......-
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqe---sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---- 85 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQE---GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---- 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33444445555566666666666654 56777788888888888777777777777777777765555433111
Q ss_pred HHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhh
Q 011943 218 EERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD-ESKKHATS 295 (474)
Q Consensus 218 EERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl-e~~~~~~~ 295 (474)
|. ..+ .|+..|..+...+..|...+-.|+..-..++........++..++..+... |.+..|
T Consensus 86 -------------~~-~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alL-- 149 (189)
T 2v71_A 86 -------------SY-KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFL-- 149 (189)
T ss_dssp -------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred -------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--
Confidence 11 234 777777777788888888888888888888888888888888888777744 444444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 011943 296 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 333 (474)
Q Consensus 296 E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~ 333 (474)
.+.++ .+..|-.+...|+..+.+|...|.
T Consensus 150 -----E~El~----EKe~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 150 -----ESELD----EKESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp -----HHHHH----HHHHHHCCC---------------
T ss_pred -----HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 255555566677777777766553
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.30 E-value=0.034 Score=51.69 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ll 190 (474)
+.+.|..|+.++.++..++++-.+.. ..|......+.+..+.+|..+.+|++......-.+..|+..+..|+...+.-.
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~-~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTA-VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887766666 78888889999999999999999999988888888888888888887766533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (474)
Q Consensus 191 qKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~ 267 (474)
.--....+.+..++..+ .-|..|+ .++..++....++..|++.+..|+.+.+++.
T Consensus 83 ~~r~q~se~~~elq~ri----------------------~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 83 RDRGHDSEMIGDLQARI----------------------TSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22233333333332222 2223444 5555666666666777777777777766665
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.18 E-value=0.029 Score=52.98 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=71.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 125 YKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 204 (474)
Q Consensus 125 lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~ 204 (474)
..+.||+-++..|.+++..+.++..+.+.+...+..++++..... ..+..++..|+.++..+...-..|...|..|+
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777788888888888888888877777764433 33445677777777777777777777777777
Q ss_pred HHHHHHHHhhhhHHHHHHHh------Hhhhhhhhhhhh
Q 011943 205 DESAALNMKRASLEERLKLL------EADKDSWTQMES 236 (474)
Q Consensus 205 ~e~~~L~qKQ~~LEERisQF------KaERDsWLkkEI 236 (474)
..++.|..+..-+..-+.-| -=||.+||..|+
T Consensus 116 q~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 116 QANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777655444333333333 225666766666
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.92 E-value=0.15 Score=49.14 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=41.5
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALID 312 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK 312 (474)
+|. .|...|..+...+..+..++..+.+.+..+...+..+...+..+...+... ...+...+.++.....
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~---------~~~~~~~~~e~~~e~~ 160 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL---------ESLVENEVKNIKETQQ 160 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 444 444444444444444444444444444444444444444444443333322 3445555555556666
Q ss_pred HHHHHHHHHHhhhh
Q 011943 313 KLITENIELVEKVN 326 (474)
Q Consensus 313 ~LwrEnakL~ekvn 326 (474)
.|..+-..|...+.
T Consensus 161 ~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 161 IIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCC
Confidence 66666666666554
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.53 E-value=0.031 Score=64.20 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=40.2
Q ss_pred hhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 011943 233 QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALI 311 (474)
Q Consensus 233 kkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~R 311 (474)
.+|. .++..+..+..++..|+.++..+.++...+++.++++++ +|+..+..+ ..++..|++|++++....
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L------~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSEL------KEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3444 555556666666666666666666666666665555553 334444444 666777777766666433
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.04 E-value=0.089 Score=54.81 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 011943 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 330 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~ 330 (474)
.+...++.+++....+..+++.++.++......++.+ ..+...++.+++...+....+.++.+.+..+..+|.=
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDL------EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhH------HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555554 6667777777777778888888888888777777754
Q ss_pred hhh
Q 011943 331 KLD 333 (474)
Q Consensus 331 ~l~ 333 (474)
+++
T Consensus 580 ~~~ 582 (597)
T 3oja_B 580 KKN 582 (597)
T ss_dssp TTC
T ss_pred Hhc
Confidence 443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.81 E-value=2.9 Score=53.37 Aligned_cols=95 Identities=11% Similarity=0.145 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~e 268 (474)
+.++-+.++.++...+.+......+-..|++++..|+++.+..+.+=..|+..+...+..+.....=+..|-.+..-|.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 45556666666666666666666666677778888887777765443366666666666666555556666666666777
Q ss_pred HHHHHHHHHHHHHhh
Q 011943 269 ENRQLKENVSSLRSQ 283 (474)
Q Consensus 269 Eiq~LkeqIseL~~~ 283 (474)
.++.+..++..+-..
T Consensus 2092 ~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2092 QSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHH
Confidence 676666666655443
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.72 E-value=0.84 Score=39.95 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011943 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (474)
Q Consensus 151 eA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqK 192 (474)
.+.++..|+.|+.........+..++.+..+|..++..+...
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665555555555666655555555554433
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.28 E-value=0.087 Score=43.69 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=43.3
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 234 kEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
..| .|+..|..++..+..|..+...+......|..+|++|+.....|+.++..+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 667777777788888888888888888888888888888888888888866
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.99 E-value=5.5 Score=50.91 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=63.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLIT 316 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~Lwr 316 (474)
.+++.+..++.+....+.+...++..+..++..++.|+.+......+-+.+ ..+.+....+++.+..+...|=.
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L------~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI------KTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 555566666666666666666666666666666666655555554444444 77777778888888888888877
Q ss_pred HHHHHHhhhhhhhHhhhhhhhhhccc
Q 011943 317 ENIELVEKVNDLSVKLDRQSVAAGLS 342 (474)
Q Consensus 317 EnakL~ekvneL~~~l~~~~~~~~~s 342 (474)
|...-.+.+.+|..++...-...=++
T Consensus 2085 Ek~RW~~~~~~l~~~~~~L~GD~LLa 2110 (3245)
T 3vkg_A 2085 ERGRWEQQSENFNTQMSTVVGDVVLA 2110 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhccHHHHHH
Confidence 77777777777655554443443333
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.82 E-value=0.68 Score=53.32 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 258 ELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 258 ~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.|++.+++|..+++.|+.++++++..+.+.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555544
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.22 E-value=0.58 Score=48.68 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 152 ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (474)
Q Consensus 152 A~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~ 215 (474)
..++.+.+.+........+......+.+..++.++..+.++-...++++.++..+...+.++-.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333334444333333344444444455555555555555555555566555555554443333
No 18
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.69 E-value=4.1 Score=37.25 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=54.4
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHH
Q 011943 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 176 (474)
Q Consensus 97 l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LE 176 (474)
+..+.+--..+=...+..|..|++++...-..|+. |+.--....+++..+|.+|+.|.....-...+-...+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs--------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE 97 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS--------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566667778888888888877777644 5555566777777888888887777666655554444
Q ss_pred HHHHHHHHHHHHH
Q 011943 177 MNIANLQSEKEFW 189 (474)
Q Consensus 177 e~IkqLq~EI~~l 189 (474)
..+..|+..|+.+
T Consensus 98 Rsv~kLEk~id~l 110 (155)
T 2efr_A 98 RSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.28 E-value=5.2 Score=37.15 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHh----HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 197 EQKISQLRDESAALNMKRASLEERLKLL----EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (474)
Q Consensus 197 eeeL~~L~~e~~~L~qKQ~~LEERisQF----KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~ 272 (474)
+..+.+|++....|......|+..+..| ..||..|.+.. +.+..++.-+.+|..++..+.........++..
T Consensus 47 E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~s----e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 47 ESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDS----EMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444 34455554432 344555566777777778888888888888888
Q ss_pred HHHHHHHHHhhhhhh
Q 011943 273 LKENVSSLRSQLSSD 287 (474)
Q Consensus 273 LkeqIseL~~~iqtl 287 (474)
|.+.|+.|+.....+
T Consensus 123 L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 123 AQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888887766655
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.38 E-value=4.1 Score=35.25 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 88 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 88 ~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
.+++.+|..|+...|....--+-++-.|..++...+..+.+.+. -+...+.+|-.|.-|+...+.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~---------------E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE---------------EMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHhhhcccH
Confidence 37888888888888887777777777777777777777766432 123456677777788877777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 011943 168 HIQREGGLEMNIANLQSEKEFWLQ 191 (474)
Q Consensus 168 ~~QkEa~LEe~IkqLq~EI~~llq 191 (474)
..-.+..|+.++..|+.|+..+.+
T Consensus 81 ~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 81 ASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888654
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.31 E-value=1.3 Score=47.60 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=22.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
.|++.|..|+..+..-...+..|+..+..+..+||.|...|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554445555555555555555555555444
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.24 E-value=1.7 Score=35.94 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (474)
Q Consensus 135 EkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~ 201 (474)
+-+.+|+.....++..++-+...|.+|+.++....+....+...-..|..++..|.++-..-..+|+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888999998888877766665333333333333333333333333333
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.95 E-value=4.2 Score=35.38 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHH
Q 011943 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 180 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~Ik 180 (474)
-.+|..|++++..+... ...+..+|+.|+-.++++=+..-..-..+.+|..+......+.+.|+.+|.
T Consensus 34 ~~~~~~Lq~El~~lr~~-~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAI-KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655 444555556677777776666666666677776666666666666666554
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.41 E-value=6.7 Score=34.15 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 011943 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~l 189 (474)
-.++.++.++.++..++.+++..-..+ +.|+..+..+++.... |.....+-...-+..++....|......+
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r-~ele~~~~~l~~Ek~~-------L~~qL~~E~~~l~e~EE~~~~L~~~k~eL 81 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARR-KELEEKMVSLLQEKND-------LQLQVQAEQDNLADAEERCDQLIKNKIQL 81 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666667777777766664433333 4444444444444333 33333333333334444455554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 011943 190 LQKEAALEQKISQLRDESAALNMKRASLE 218 (474)
Q Consensus 190 lqKEa~LeeeL~~L~~e~~~L~qKQ~~LE 218 (474)
-.+-..+..++......+..|..+-..|+
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555544444444444434333
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.31 E-value=4.9 Score=34.79 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=52.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
..+.+..|..|+.+|+.+... .+.+.-.|..++ ..+.+|+.+.+.-...+..++..|..|+...+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e-~a~l~leldn~~--------------~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTND-KARVEVERDNLA--------------EDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------------HHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 356677777777777776666 333333333333 34444444444444555666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011943 188 FWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 188 ~llqKEa~LeeeL~~L~~e~~~L 210 (474)
...=--..|+.++..|..+...|
T Consensus 80 ~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 80 NASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 75444456666677776666544
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.18 E-value=13 Score=33.94 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDES 207 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~ 207 (474)
.-++|..++.+|..|+...
T Consensus 68 asqrEd~yEeqIk~L~~kL 86 (155)
T 2efr_A 68 YSQKEDKYEEEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 27
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.15 E-value=5.5 Score=32.81 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~ 209 (474)
+...+.+|+.+.+.-...+...+..+..|+...+..----..|+.++..|..+...
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555444444555555555555443
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.90 E-value=11 Score=31.64 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 140 LQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 140 Le~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
|+.+.+.++-+...++..++.+..
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~ 37 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEE 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.76 E-value=4.2 Score=37.22 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
.+..|+..+..+...+.+|.+.+.+-...++.+ ..|+..|+-++..+.+....|-.||..|++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l------~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERL------NAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555444444444 667777788888888888888889988887
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.18 E-value=14 Score=32.07 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
.+...|..|+-.++.+-..+...-..|..++.+...-
T Consensus 53 ~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 53 QLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555556666555555555555555554433
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.89 E-value=14 Score=30.86 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011943 116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 195 (474)
Q Consensus 116 kqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~ 195 (474)
..|+.++..++.. +..+...+..|+.++...-..+..++.....|...-...-.....+.-++-.++.+..++..+..-
T Consensus 7 ~~l~~eL~~l~~e-E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 7 EQLQRELKELALE-EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554 444444445555555555555555555555555444444443444444444444444444333333
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.82 E-value=11 Score=31.11 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 011943 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEET 157 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~k 157 (474)
.++.++.++.++..++..++-.-..+ +.|+..+..+++..+.+...
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~r-kele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIK-KELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666655554333333 44444444444444444444
No 33
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.59 E-value=21 Score=38.60 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHhhhhHHHHHHHh----Hhhhhhhhhhhh-chHHHH
Q 011943 209 ALNMKRASLEERLKLL----EADKDSWTQMES-VSKETI 242 (474)
Q Consensus 209 ~L~qKQ~~LEERisQF----KaERDsWLkkEI-sLke~I 242 (474)
.+.+++.+++|++.|+ +.||..|++.-- .|..++
T Consensus 516 ~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~ 554 (592)
T 1f5n_A 516 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 554 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888886 666666664433 444443
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.48 E-value=15 Score=30.80 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
.+++.+....-+.-..+|..|..|+-++ ..++..+..++........+-...+......+.++..|
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~-------~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQL-------RVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444332 23444444444444444444444444444444444444
No 35
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=85.04 E-value=0.3 Score=31.89 Aligned_cols=13 Identities=62% Similarity=1.001 Sum_probs=11.8
Q ss_pred chhHhHHHHhhcc
Q 011943 451 PFRLVSFVAKYVS 463 (474)
Q Consensus 451 pfrlisfva~yvs 463 (474)
-|||+-||-|||-
T Consensus 4 gfrlvlfvkryvr 16 (26)
T 1z2t_A 4 GFRLVLFVKRYVR 16 (26)
T ss_dssp CTTHHHHHHHHTH
T ss_pred cEEEeeeHHHHHH
Confidence 4999999999994
No 36
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=84.40 E-value=9.1 Score=39.94 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~e 268 (474)
+++.+..++..|.+|+..++.+.+.-....+.+.-++ ++|...+-.....+......-..+.+++..++.-+.....
T Consensus 29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik---~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQ---LTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHH---HhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 7788888889999999999888888885555555554 8888887766665555555555677777777777777777
Q ss_pred HHHHHHHHHHHHHh
Q 011943 269 ENRQLKENVSSLRS 282 (474)
Q Consensus 269 Eiq~LkeqIseL~~ 282 (474)
.|..|+..+.....
T Consensus 106 ~i~~l~~~~~~~~~ 119 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQ 119 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666555433
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.14 E-value=15 Score=30.13 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 011943 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (474)
Q Consensus 140 Le~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ll 190 (474)
++..+..=+...+.+|-.|.-|+.-.+..--.+..|+.++..|+.||..+.
T Consensus 33 fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 33 LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556678899999999999999999999999999999999998764
No 38
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=83.39 E-value=22 Score=31.27 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh---hhhHHHHHHHh-HhhhhhhhhhhhchHHHHhhhHHH
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKIS-QLRDESAALNMK---RASLEERLKLL-EADKDSWTQMESVSKETIAGLSVD 248 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~-~L~~e~~~L~qK---Q~~LEERisQF-KaERDsWLkkEIsLke~Issl~~~ 248 (474)
....++++|+.+...|.++|.+.=.+.. .+......|..+ ..++++|+..+ ....-.|.+.+-
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY------------ 73 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQY------------ 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH------------
Confidence 4566788888888887777765433332 233333344443 77888888888 444445665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 249 ~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
..| ++.-+.-++.|+.+|......|+.+
T Consensus 74 -~~L---~KkYk~~~~~Ld~eI~~qe~iI~nF 101 (119)
T 2avr_X 74 -QEL---ASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp -HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3444555556666666666666655
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.72 E-value=3.9 Score=36.51 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=17.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
.+..+..++.+|.+++..++..+.++..++..|+..+..|+.++.
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444433333
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.67 E-value=22 Score=36.15 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=18.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
..++.++.-++.++.+.-+.+.+.++-|-+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 455 KKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 555666666666666666666666665543
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.37 E-value=7.6 Score=33.71 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=17.1
Q ss_pred hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 229 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 229 DsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
+.|.+.-+ .++..+......+.....++.++...+..|.-+++.++.+...|+..+..
T Consensus 10 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 10 ESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444 44444444444444444444444444444555555554444444444443
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.25 E-value=14 Score=37.33 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=40.6
Q ss_pred hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 227 DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 227 ERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
....||++.+ .++..+...+.+-..+-+-|..|..++..-+.+ -..+|.+++.++.++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---GQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3467788888 888888888888888888888888776655444 223566665554444
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.30 E-value=22 Score=29.58 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 011943 140 LQRQNDLRMQKEATLEETIKQLR 162 (474)
Q Consensus 140 Le~E~~~~lQkeA~lE~kIkdLq 162 (474)
|..+.+.++-+.-.++..++.+.
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e 36 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.91 E-value=6.7 Score=34.21 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=14.3
Q ss_pred hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 229 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 229 DsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
+.|.+.-+ .++..+......+.....++.++...+..|.-+++.++.+...|+.++..
T Consensus 12 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 12 EEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444 44444444444444444444444444444444444444444444444443
No 45
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=80.78 E-value=8.5 Score=39.99 Aligned_cols=94 Identities=9% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~e 268 (474)
+.+.+..+...|..|+..+..+..+-.....-+ ++=.+.|-+.|-.....+.........+.+++..++..+.....
T Consensus 29 L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lv---k~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~ 105 (409)
T 1m1j_C 29 FNKYRLTTDGELLEIEGLLQQATNSTGSIEYLI---QHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHEN 105 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445555566666666555555544444222222 22235566655543333333344555677777777777777777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 011943 269 ENRQLKENVSSLRSQLS 285 (474)
Q Consensus 269 Eiq~LkeqIseL~~~iq 285 (474)
++..|+..+..++..|+
T Consensus 106 ~i~~l~~~~~~~~~~i~ 122 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKIT 122 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 77777666665544444
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.55 E-value=24 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
.+..|..|+..++.+...-+.+.-+++.+.....
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.51 E-value=12 Score=32.66 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=31.0
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhh
Q 011943 232 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ----ENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~e----Eiq~LkeqIseL~~~iqtl 287 (474)
.+.|| .++..|.++..++.++..+...|+..+..+.. +...++..|..++.+++.+
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667 77777777777777777777776666655443 3344444555555444443
No 48
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.17 E-value=14 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 218 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 218 EERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
..|+.+++.+.|.|.-+=..+...+...+.....+..+|..|...+..+..+.....+.+..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444444444444444444444444444444444444444444333
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.98 E-value=11 Score=32.73 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 304 IEAAGALIDKLITENIELVEKVNDL 328 (474)
Q Consensus 304 iEal~d~RK~LwrEnakL~ekvneL 328 (474)
+.+--+-|+++-.+-..|.+.+..|
T Consensus 78 F~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 78 FQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccchhhHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 50
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.48 E-value=15 Score=31.85 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=30.4
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhh
Q 011943 232 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ----ENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~e----Eiq~LkeqIseL~~~iqtl 287 (474)
.+.|| .++..|.++..++.++..+...|+..+..... +...++..|..++.+++.+
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556 66666666666666666666666665554433 3334444444444444433
No 51
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.27 E-value=27 Score=29.22 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 011943 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF 224 (474)
+..|+.++..+...|+.+-.+|..|..+...+..--..++....+|
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666555555544444444444444
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.79 E-value=16 Score=39.44 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=11.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 011943 107 KEATLEGTVQQLQNECDLYKEKV 129 (474)
Q Consensus 107 ~e~~~Ee~IkqLqeEi~~lkqkL 129 (474)
-..++.++=+.|..-|++++..+
T Consensus 51 LQglLdkqErDltkrINELKnqL 73 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSL 73 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHH
Confidence 34455555555555555555544
No 53
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.05 E-value=33 Score=28.55 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQ 164 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~ 164 (474)
.+++.+....-+.-..+|..|..|+-+
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kK 52 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKK 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444444444444444444444443
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=75.97 E-value=14 Score=32.29 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=4.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 011943 300 FSTQIEAAGALIDKLITENIELV 322 (474)
Q Consensus 300 LksQiEal~d~RK~LwrEnakL~ 322 (474)
|..-++..|..-..|-++|..|+
T Consensus 82 Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 82 LMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHhhccchh
Confidence 33334444444444444444443
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.68 E-value=31 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhhhh
Q 011943 316 TENIELVEKVNDLS 329 (474)
Q Consensus 316 rEnakL~ekvneL~ 329 (474)
++-+.+..++..|.
T Consensus 76 ~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 76 KEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 56
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.53 E-value=51 Score=30.06 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=12.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHH
Q 011943 105 IQKEATLEGTVQQLQNECDLYKEK 128 (474)
Q Consensus 105 ~~~e~~~Ee~IkqLqeEi~~lkqk 128 (474)
|=+.+.|++++..++.++......
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~r 35 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAA 35 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHH
Confidence 344555566655555555544443
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.30 E-value=41 Score=30.75 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALN 211 (474)
Q Consensus 179 IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~ 211 (474)
+..|+.|+..+.-+-..++.++..|+.++..|.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777777777777777777777777776553
No 58
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.23 E-value=19 Score=29.56 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~qK 213 (474)
++.++..|......+.+-...+..+|..|+.++..+...-..+.-+|.++......+|+-
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555566677777888899999999999998888888888888877766653
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.12 E-value=34 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
..++.+|+.++..+.+..+.|.+++..|.-
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 677788888888888888888888876653
No 60
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=73.09 E-value=25 Score=27.55 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=34.8
Q ss_pred Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 225 EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (474)
Q Consensus 225 KaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lk 274 (474)
+.|=+.|.+.-+ .|+..+......+.....++.++...+..|.-+++.++
T Consensus 26 r~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 26 LQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344466777666 67777777777777777777777777777777766654
No 61
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.88 E-value=31 Score=35.72 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011943 255 QVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqI 277 (474)
.+..|+.-+..+..+||.|...|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 62
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.78 E-value=54 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 011943 80 HLLQREAMAILEETVKHLRNE 100 (474)
Q Consensus 80 ~~~q~e~~~~~eeti~~l~~e 100 (474)
.+|++=| +.+.+.|+.+..-
T Consensus 28 e~L~~vA-~~vd~km~ei~~~ 47 (138)
T 3hnw_A 28 EYLQRVA-SYINNKITEFNKE 47 (138)
T ss_dssp HHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHHHHHHHhc
Confidence 4666655 6899999998864
No 63
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=70.74 E-value=42 Score=27.44 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqK 192 (474)
++..++.++.........+..++.+...|..++..+..+
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.18 E-value=95 Score=31.30 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 255 QVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
.|++|+.++..+..+++.+..+|.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.99 E-value=22 Score=29.24 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
+|.+|..|+.......+.+..+..+++++-.-.+.-+.....+.+.|..|
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 55556666666666666666666666666666665555555555555554
No 66
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.74 E-value=55 Score=28.48 Aligned_cols=51 Identities=8% Similarity=0.069 Sum_probs=31.5
Q ss_pred hh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhh
Q 011943 235 ES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ---ENRQLKENVSSLRSQLS 285 (474)
Q Consensus 235 EI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~e---Eiq~LkeqIseL~~~iq 285 (474)
|| .|+..+.+....+..-+.++..+++.+..+.. +|+-|+.|+.-......
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45 66666666666666666666666666665555 56666666665544443
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.95 E-value=95 Score=32.21 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred cccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 011943 58 VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETI 137 (474)
Q Consensus 58 ~~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEki 137 (474)
-|...-||+|-.. +..++..+- =+.-+|..|++..+.+.|. -.++..+...+..++..++
T Consensus 42 eDwG~kCPsGCrL-------qg~Ldk~er--~~~~rIe~L~~~L~~~s~s-----------~~~~~~y~~~~~~~lk~~~ 101 (390)
T 1deq_A 42 EDWNTKCPSGCRM-------KGLIDEVDQ--DFTSRINKLRDSLFNYQKN-----------SKDSNTLTKNIVELMRGDF 101 (390)
T ss_pred hhccCCCCccchH-------HHHHHHhhh--hHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHH
Confidence 3677889999641 112222222 3455555566655544433 3344444444455555554
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 200 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL 200 (474)
.|..+--+-+-+--..||.+|.-|+.++..+.+ .|+.||.-|..+.-+...|+..|
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-------~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-------RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444555555666677777666665554 35555555555555555555555
No 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.38 E-value=84 Score=33.42 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQF-KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~ 267 (474)
+.+.|..+..+|.+|.+.+..+.+.-. -+.++ ..=.|.|-+.....+..=-..+.-...|+.++.-|++.++.-.
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~----~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYK----TSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666665554433333 22222 2222333222222222222222333355555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 011943 268 QENRQLKENVSSLRSQLSSDES 289 (474)
Q Consensus 268 eEiq~LkeqIseL~~~iqtle~ 289 (474)
.-|..|+..|..+...++.||.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666555555554433
No 69
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.13 E-value=1e+02 Score=32.57 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNM 212 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~q 212 (474)
|.+.+..++..|.+|++..+.+.+
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhh
Confidence 445555566666666666655533
No 70
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=66.92 E-value=60 Score=27.70 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011943 194 AALEQKISQLRDESAALNMK 213 (474)
Q Consensus 194 a~LeeeL~~L~~e~~~L~qK 213 (474)
..++.+...+..-+..|..|
T Consensus 47 ~k~~eq~~~le~lk~eL~~~ 66 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATS 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333
No 71
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.85 E-value=45 Score=26.91 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 011943 298 KDFSTQIEAAGALIDKL 314 (474)
Q Consensus 298 ~dLksQiEal~d~RK~L 314 (474)
..|..+|.++.+.|..|
T Consensus 49 e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 49 EILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 34445566666666554
No 72
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.52 E-value=27 Score=29.83 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSD--------ESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 326 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl--------e~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvn 326 (474)
++..|...+..|..++..|++.+..|+.++... ...+.++=...=....+........+|..|...|.++|-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666666555555421 011111111111222234455677778888888888777
Q ss_pred hh
Q 011943 327 DL 328 (474)
Q Consensus 327 eL 328 (474)
.|
T Consensus 93 ~l 94 (100)
T 1go4_E 93 AM 94 (100)
T ss_dssp TC
T ss_pred HH
Confidence 66
No 73
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.41 E-value=77 Score=28.40 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=60.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHH
Q 011943 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (474)
Q Consensus 108 e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~ 187 (474)
....++.|..|..++...+.-. ...+..+....++.+-+|..+..-.........+-..|+++|..+-.-+.
T Consensus 47 ~~~deEr~~~lE~qLkeak~~a--------eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIA--------EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666553 45666788888888888888888888877777777777777776666555
Q ss_pred H-------HHHHHHHHHHHHHHH
Q 011943 188 F-------WLQKEAALEQKISQL 203 (474)
Q Consensus 188 ~-------llqKEa~LeeeL~~L 203 (474)
+ .-++|..++.+|..|
T Consensus 119 sLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 119 SLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHTTTTHHHHHHHHHHHHTTS
T ss_pred hhHHhHHHHHHHHHHHHHHHHHH
Confidence 5 445555555555544
No 74
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=64.83 E-value=22 Score=29.46 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=35.1
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
++.+.++..+..+..+..++.+.+.....|..+++.|++++.+|+
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777778888888888888888888888888888777754
No 75
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=64.68 E-value=20 Score=27.05 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=34.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
...|..++..+..|-+.|++|+...+..++||..|+.=+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999998876554
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.59 E-value=58 Score=26.76 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
.+.+..+......+...+..|+..+..+..+...++..+.
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 77
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.55 E-value=15 Score=29.70 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=19.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+..+.....++......|..|+..+...+.+|+.|+..++.+
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444445555555555555555555444444
No 78
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.19 E-value=22 Score=31.16 Aligned_cols=10 Identities=40% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHhhhhhh
Q 011943 319 IELVEKVNDL 328 (474)
Q Consensus 319 akL~ekvneL 328 (474)
.+|+++-.+|
T Consensus 109 ~KLKe~yteL 118 (120)
T 3i00_A 109 SKLKEKYSEL 118 (120)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.45 E-value=12 Score=29.91 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 244 sl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
....-+..|..+|..|+.....+..+|..|+.++..|...+..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777888888888877777665543
No 80
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=63.34 E-value=17 Score=26.71 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
..+..+......|.....+|++.++-|..||+.|+..+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 45666677777777777888888888888888887654
No 81
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.17 E-value=64 Score=26.73 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 011943 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 154 lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ 188 (474)
+|..|.+|+...+......+.++-+|..|+.++..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 82
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=62.36 E-value=54 Score=27.79 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=35.7
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLL---QENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKL 314 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~---eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~L 314 (474)
|+..+.+....+.+-+.+|..|++.+.... +.|.-|+.++.-. ...+..=|+-++.+....+.|
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY-------------~~DF~aERadREkl~~eKe~L 73 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY-------------KADFQAERHAREKLVEKKEYL 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhHHHHH
Confidence 334444444444444444444444333333 3444444444433 223333344456666666666
Q ss_pred HHHHHHHHhhhhhh
Q 011943 315 ITENIELVEKVNDL 328 (474)
Q Consensus 315 wrEnakL~ekvneL 328 (474)
+.....|.-.++.|
T Consensus 74 ~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 74 QEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555555
No 83
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.24 E-value=24 Score=30.59 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=21.7
Q ss_pred HhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHH
Q 011943 225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE 261 (474)
Q Consensus 225 KaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEe 261 (474)
+.||++|+...+..+..+..++..+..|+..+.....
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~ 39 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTA 39 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4577888887776666555555555555444443333
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.79 E-value=72 Score=26.23 Aligned_cols=37 Identities=14% Similarity=0.342 Sum_probs=16.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 242 Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
+......+..+..++..+...+..+..++..|...+.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 85
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=58.42 E-value=36 Score=25.30 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011943 139 QLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (474)
Q Consensus 139 QLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~ 169 (474)
||+.+...+-+-+|.+-..|..|+++.-+|.
T Consensus 21 qlerdeqnlekiianlrdeiarlenevashe 51 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444455555555555555555544
No 86
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=58.24 E-value=38 Score=31.97 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=29.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
+++++..-..-+..|+.+...|...+.....+|++|++++.+++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555555566777777777777777778888888777777766654
No 87
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.41 E-value=1.2e+02 Score=27.56 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
...++..|..+...-..+-...+.....+..+...|
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554444444555555555555544
No 88
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=54.95 E-value=1.1e+02 Score=32.29 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHHH--HHHHH
Q 011943 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE--SRNNL 266 (474)
Q Consensus 189 llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LEe--sl~sL 266 (474)
|++.+...+..|..|+..+..+.++-....+.+.-++ ++|...+-..... ...-.+-.+..+++..-+. -....
T Consensus 86 L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik---~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~~~~~~~~~ 161 (461)
T 3ghg_B 86 LLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLK---DLWQKRQKQVKDN-ENVVNEYSSELEKHQLYIDETVNSNI 161 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH---HHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHHHHHHHTHH
T ss_pred HHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHhccccCCCCcc-hhHHHHHHHHHHHHHHHHHhhhhccc
Confidence 7777788888888888888877777774444444443 6666555533332 1111222222222222222 23345
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 011943 267 LQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 267 ~eEiq~LkeqIseL~~~iqtl 287 (474)
...|+.|+..+..+...|+.+
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l 182 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKL 182 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444444
No 89
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=54.37 E-value=1e+02 Score=26.26 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
|+...+...+....+..++..+..++..|
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555443
No 90
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.21 E-value=27 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 256 VVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 256 V~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
|..|+..+....++++...+.|..++.+++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 91
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.80 E-value=83 Score=25.09 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e 206 (474)
+.+|+.+.+.+.-+...++..++..... ..++..++.++..+...++..|..+...
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~--------------~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEER--------------SKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666665555555555555433 3344444444445555555555444333
No 92
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.76 E-value=61 Score=26.56 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 011943 298 KDFSTQIEAAGALIDKL 314 (474)
Q Consensus 298 ~dLksQiEal~d~RK~L 314 (474)
..|..+|.++.+.|..|
T Consensus 55 e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 55 QLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 34445566666666554
No 93
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.28 E-value=89 Score=25.27 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=18.2
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 238 Lke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
..+.+..+......+...+..|+..+..+..+...++..+
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 94
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.18 E-value=76 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=17.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 270 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEi 270 (474)
.|...|..++.++..|+-++..+...++.+.+.-
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444444333
No 95
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=52.80 E-value=92 Score=26.38 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 327 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvne 327 (474)
++..|..++...++.+..-...|..|++.+..+...+.++ ..|...+.-+++-+.+--+-|+.+-.+-..|.+.+..
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i---~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV---PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 79 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456777777888888888888888887777665444322 3445566666666777778889999888888888888
Q ss_pred hhHhhhhhh
Q 011943 328 LSVKLDRQS 336 (474)
Q Consensus 328 L~~~l~~~~ 336 (474)
|.-+++...
T Consensus 80 lq~q~~~L~ 88 (94)
T 3jsv_C 80 LQREFNKLK 88 (94)
T ss_dssp HHHTTC---
T ss_pred HHHHHHHHH
Confidence 865544443
No 96
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=52.32 E-value=82 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.071 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI 186 (474)
.-|.--++++|.++-.+=+.-.-|+.++.+..+....++.+++.++.+.
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888888888888888888888888877776654
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.58 E-value=99 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 011943 295 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 334 (474)
Q Consensus 295 ~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~~ 334 (474)
.-...|..+++.+....+.|-..-..+.++.++|..+|..
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777777777777777666644
No 98
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=51.30 E-value=30 Score=26.87 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 239 ke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
...+..++..+.+|-.+|.+|+.+.+.-++||.-|..-+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999998866554
No 99
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=51.28 E-value=61 Score=24.06 Aligned_cols=48 Identities=25% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Q 011943 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQI 304 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQi 304 (474)
.+...+..+......+..+.++++..+..+...++++ .+.+..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~------~~~I~~~k~qi 56 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTI------RDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3444444444444444444444444444444444444 44444444443
No 100
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.66 E-value=76 Score=26.01 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHhHhhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHHH
Q 011943 217 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 260 (474)
Q Consensus 217 LEERisQFKaERDsWLkkEIsLke~Issl~~~~~sLq~QV~~LE 260 (474)
|.|++.+.++|-+++=+.+-.|+.=-..+...+..|..+...++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33455555554444433333333333333333333333333333
No 101
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.26 E-value=53 Score=29.43 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011943 112 EGTVQQLQNECDLYKEK 128 (474)
Q Consensus 112 Ee~IkqLqeEi~~lkqk 128 (474)
|+.+..++..|...+..
T Consensus 7 Ed~L~~~r~~l~~~~~~ 23 (135)
T 2e7s_A 7 EEQLNKSLKTIASQKAA 23 (135)
T ss_dssp CSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.12 E-value=78 Score=27.59 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 011943 114 TVQQLQNECDLYKEKVQATL 133 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~ll 133 (474)
.|..|..++..++..++.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 103
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.33 E-value=2.8e+02 Score=29.29 Aligned_cols=18 Identities=6% Similarity=0.359 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011943 111 LEGTVQQLQNECDLYKEK 128 (474)
Q Consensus 111 ~Ee~IkqLqeEi~~lkqk 128 (474)
.++.|++|+..++.+.++
T Consensus 98 V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhh
Confidence 556666666666666544
No 104
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.94 E-value=55 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 011943 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128 (474)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqk 128 (474)
.+...|-+|+..|=-.-+-|.-+|+.|..|+++|.-+.-+
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 6777888888887777778888999999999998877655
No 105
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.37 E-value=34 Score=29.27 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh--Hhhhhh
Q 011943 193 EAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDS 230 (474)
Q Consensus 193 Ea~LeeeL~~L~~e~~~L~qKQ~~LEERisQF--KaERDs 230 (474)
...++.+|+.|..++..|...-..||.++.++ +.+.|.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34555666666666666666666666666664 444443
No 106
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.04 E-value=38 Score=30.40 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHHHHHHHH
Q 011943 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSE 185 (474)
Q Consensus 155 E~kIkdLq~~~~s~~QkEa~LEe~IkqLq~E 185 (474)
+.++..|.....-...++...+....++..|
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 75 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKE 75 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 107
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.72 E-value=62 Score=24.56 Aligned_cols=11 Identities=0% Similarity=0.054 Sum_probs=4.4
Q ss_pred hhhhhhhHHHH
Q 011943 294 TSEQKDFSTQI 304 (474)
Q Consensus 294 ~~E~~dLksQi 304 (474)
..|.+..+.++
T Consensus 38 k~eA~RAN~Rl 48 (52)
T 1jcd_A 38 KDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33444444433
No 108
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=44.51 E-value=1.8e+02 Score=26.28 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011943 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN 264 (474)
Q Consensus 186 I~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~ 264 (474)
|..+.+--..+..++.+.+.+.....-.-+--..+..|++. |+.+-++|| .|......++-.........+.-...-+
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqK-Rn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQn 91 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQK-RNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQN 91 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHh
Q ss_pred HHHHHHHHHHH----------HHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 265 NLLQENRQLKE----------NVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKV 325 (474)
Q Consensus 265 sL~eEiq~Lke----------qIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekv 325 (474)
.-.--+..|++ .+.+|-.+|.-+ ..+..+=+-..-+..+.-+.|--+|..++++.
T Consensus 92 QQSlDiRKLrELEADLKEKDsMVe~LT~TiG~L------rKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 92 QQSLDMRKLGELEADLKEKDSMVESLTETIGIL------RKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp HHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
No 109
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=44.31 E-value=3.3e+02 Score=29.29 Aligned_cols=8 Identities=13% Similarity=0.555 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 011943 252 LRMQVVEL 259 (474)
Q Consensus 252 Lq~QV~~L 259 (474)
|+.|+..|
T Consensus 572 ~~~ei~~l 579 (592)
T 1f5n_A 572 MKNEIQDL 579 (592)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.92 E-value=63 Score=24.42 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 251 QLRMQVVELEESRNNLLQENRQLKE 275 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~Lke 275 (474)
.|+.+|..|+.....|..++..|+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 111
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.64 E-value=1.2e+02 Score=25.05 Aligned_cols=63 Identities=11% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011943 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (474)
Q Consensus 94 i~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~ 164 (474)
+..|+.-.+..||-...+-+.+.+.+..+-....+| +..+..+..+...+..++.++++|+..
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL--------~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQL--------REAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666666666655555555555555555444443 555666666666666666666666543
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.43 E-value=68 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
..|+.+|..|+.....|..++..|...+..
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 113
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.68 E-value=1.8e+02 Score=28.34 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 011943 172 EGGLEMNIANLQSEKE 187 (474)
Q Consensus 172 Ea~LEe~IkqLq~EI~ 187 (474)
+..|+..|..++..++
T Consensus 207 El~LE~eL~~V~~Rie 222 (242)
T 3uux_B 207 QLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 114
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.59 E-value=1.2e+02 Score=32.16 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=20.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lk 274 (474)
.|-.+......++.++..|+.+++.+..+|.+++
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666666666666543
No 115
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.46 E-value=1.2e+02 Score=24.55 Aligned_cols=27 Identities=4% Similarity=-0.055 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
.++..+...+..++.++..++..+...
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555544444433
No 116
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=38.56 E-value=79 Score=26.63 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHH
Q 011943 245 LSVDITQLRMQVV-ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEA 306 (474)
Q Consensus 245 l~~~~~sLq~QV~-~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEa 306 (474)
+..+....+.+.. ..+..+.+-..|.+..+..|.+|+.+..++ ++.-..|+..|+.+++.
T Consensus 26 ~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km--Kq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 26 VSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKM--KDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3344445555554 777778888899999999999998888876 45555667777766653
No 117
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.54 E-value=1.6e+02 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
..|......+-.....++-.+..|..
T Consensus 20 ~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 20 NEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444445555555555556666654
No 118
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.19 E-value=1.6e+02 Score=24.25 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
++..|+..|.+++.+...-+....+-++.+..|
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~L 59 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQL 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444444444444444433333333
No 119
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.19 E-value=90 Score=22.90 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEF 188 (474)
Q Consensus 175 LEe~IkqLq~EI~~ 188 (474)
|+++|..|+.|+.+
T Consensus 22 LEervstLq~EN~m 35 (42)
T 2oqq_A 22 LEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 33333333333333
No 120
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.79 E-value=57 Score=33.42 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=20.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVE 323 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~e 323 (474)
..+..+++.++-....+|+.|.-+=.+|+.
T Consensus 30 ~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 30 ELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555566667777888888777666654
No 121
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.55 E-value=61 Score=32.63 Aligned_cols=30 Identities=17% Similarity=0.007 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 251 QLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 251 sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
+|..++..++..+.....+++.|+..+..+
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~ 38 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVN 38 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 122
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=35.99 E-value=3.5e+02 Score=28.60 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHH
Q 011943 79 QHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQN 120 (474)
Q Consensus 79 ~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqe 120 (474)
+-|+.-+. .....|..|+...+..-++-......|..|+.
T Consensus 84 d~L~kye~--~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 84 EALLQQER--PIRNSVDELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHhccc--chhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555555 55666666666555444444333344433333
No 123
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.96 E-value=2e+02 Score=26.15 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=22.5
Q ss_pred hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 232 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 232 LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
|-.++ .+.+.+...+.....+..++..++..+..|..+.+.|
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555 6666666666665555555555555444444444433
No 124
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=35.86 E-value=3.1e+02 Score=26.45 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=16.4
Q ss_pred ccCCCCccccccccccCCCCCC
Q 011943 45 SQASEPADIQNVQVDADRHQSN 66 (474)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~ 66 (474)
++.+-+..||-+-+|..=-+.|
T Consensus 13 ~~ln~PV~vQatrld~sILPrN 34 (242)
T 3c9i_A 13 PSLNNPVVIQATRLDASILPRN 34 (242)
T ss_dssp GGGGSCCCCSCCCCCSSSSCTT
T ss_pred cCCCCCeEEEEeeccccccccc
Confidence 4456688888888887776666
No 125
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.48 E-value=1e+02 Score=23.60 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 011943 258 ELEESRNNLLQENRQLKENVSSLRS 282 (474)
Q Consensus 258 ~LEesl~sL~eEiq~LkeqIseL~~ 282 (474)
.|+.....|..+|..|..+|+.|+.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 126
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.48 E-value=2e+02 Score=25.81 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011943 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA 131 (474)
Q Consensus 85 e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~ 131 (474)
+|...+++=.+.|..|.+...|-..+|+..+..+++.+...+..++.
T Consensus 79 eA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~lee 125 (152)
T 4fla_A 79 EACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56668888888888888888888888888888877777777766543
No 127
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.34 E-value=3.1e+02 Score=28.06 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011943 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQN 165 (474)
Q Consensus 136 kikQLe~E~~~~lQkeA~lE~kIkdLq~~~ 165 (474)
.|..|+.+++.+......+..+.+.+...+
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 128
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.65 E-value=2.2e+02 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
..|++.|..-...+-.+-.+.+.++=.|-+|...++
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd 257 (373)
T 3hhm_B 222 RRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRD 257 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 334444444444444444445555555555544444
No 129
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.29 E-value=2.2e+02 Score=24.40 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 245 l~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
+.++-..|..||.-|+..+..+++..-+++....+
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556655555555555555555444433
No 130
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.21 E-value=1e+02 Score=23.26 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 256 VVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 256 V~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
+..|+.....|..+|..|...|..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 131
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=34.12 E-value=2.3e+02 Score=24.53 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 011943 115 VQQLQNECDLYKEKVQATLEET 136 (474)
Q Consensus 115 IkqLqeEi~~lkqkLE~lleEk 136 (474)
..+|+.+...+...|+....++
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r 29 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDK 29 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444444444
No 132
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.88 E-value=1.6e+02 Score=27.86 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=9.5
Q ss_pred cCCceeeccCCcc
Q 011943 408 YSGEIVQIPLDDK 420 (474)
Q Consensus 408 ~~~eiv~~~ld~~ 420 (474)
...||+-||+=+-
T Consensus 128 ~~~e~~Y~P~l~~ 140 (190)
T 4emc_A 128 QVTEVIYAPVLKQ 140 (190)
T ss_dssp -CCEEEEEECCSS
T ss_pred CCceEEEeccccc
Confidence 3678999998655
No 133
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.87 E-value=1.5e+02 Score=23.86 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 253 RMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 253 q~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
+.++..|+..+..|+.++..|...+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555544444
No 134
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.08 E-value=73 Score=23.98 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=32.0
Q ss_pred hhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 228 KDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQE 269 (474)
Q Consensus 228 RDsWLkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL~eE 269 (474)
|-.+-.+|. .|...+.++..++.-|...+..|+..+.+|+..
T Consensus 11 rvayklkenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 11 RVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 344445666 888888888888888888888888888777643
No 135
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.02 E-value=1.1e+02 Score=31.77 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=17.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
.|-.+......++.++..|+.+++.+..+|..+
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555443
No 136
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.91 E-value=43 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 249 ~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
|..|+.++..|+..+..|..++..|+.++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555555555555555666666665555443
No 137
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.79 E-value=4.3e+02 Score=27.29 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=2.6
Q ss_pred CCCCCc
Q 011943 63 HQSNGA 68 (474)
Q Consensus 63 ~~~~~~ 68 (474)
-||+|=
T Consensus 18 ~CPT~C 23 (409)
T 1m1j_C 18 YCPTTC 23 (409)
T ss_dssp EEECTT
T ss_pred cCCCcc
Confidence 344443
No 138
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.62 E-value=1.9e+02 Score=29.64 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (474)
Q Consensus 248 ~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~i 284 (474)
+...|..++..+.+.+..++.+...+.+.+..+-..+
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445556666666666666666666666665444443
No 139
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.46 E-value=70 Score=24.31 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011943 259 LEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 259 LEesl~sL~eEiq~LkeqIseL 280 (474)
|+.....|..+|..|...|..|
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 140
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=31.64 E-value=1.2e+02 Score=26.97 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (474)
Q Consensus 118 LqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~Le 197 (474)
|=.|+.+...+|+....++ +-|++.+....++...++..+..++....... ..|.-+..++++.+.+-.++-..-+
T Consensus 7 L~~ELqEsqskL~~Ae~~k-~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~---d~L~lQ~esmeaalkmEr~~~~eEK 82 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKEC-QALEGRARAASEQARQLESEREALQQQHSVQV---DQLRMQGQSVEAALRMERQAASEEK 82 (130)
T ss_dssp ---------------------------------------------CTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777 77888777777777777776666655433322 3355555566666665555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhHhhhhhhhhhhh
Q 011943 198 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 236 (474)
Q Consensus 198 eeL~~L~~e~~~L~qKQ~~LEERisQFKaERDsWLkkEI 236 (474)
.+|.+|+. .+.+|=.|+|..|+..+
T Consensus 83 rkLAqLQ~--------------AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 83 RKLAQLQV--------------AYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 55555544 45555556777777666
No 141
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.53 E-value=1.8e+02 Score=25.00 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=26.0
Q ss_pred hhhhhhchHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 231 WTQMESVSKETIAGLSVDITQLRM-------QVVELEESRNNLLQENRQLKENVSS 279 (474)
Q Consensus 231 WLkkEIsLke~Issl~~~~~sLq~-------QV~~LEesl~sL~eEiq~LkeqIse 279 (474)
+++.=+.|...++.+..++..|+. +|.+|+..+.-|..+|+.|+..-..
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 343334555666666555555555 4555555555555555555444333
No 142
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.17 E-value=88 Score=23.54 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENV 277 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqI 277 (474)
.+...|+.+...|+..+..|..+++.|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 143
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.66 E-value=1.5e+02 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
..|-.+......++.++..|+.+++.+..+|-++
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666666666554
No 144
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.61 E-value=2.4e+02 Score=23.72 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~ 208 (474)
+.+.+.+|+.++..+.++-..++..+.++..-..
T Consensus 6 l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e 39 (133)
T 1fxk_C 6 IVAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544444
No 145
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.39 E-value=1.2e+02 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011943 259 LEESRNNLLQENRQLKENV 277 (474)
Q Consensus 259 LEesl~sL~eEiq~LkeqI 277 (474)
|+.....|..+|..|...|
T Consensus 28 Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 146
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.56 E-value=84 Score=23.63 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011943 255 QVVELEESRNNLLQENRQLKENVSSLRSQL 284 (474)
Q Consensus 255 QV~~LEesl~sL~eEiq~LkeqIseL~~~i 284 (474)
-+..|+.....|..+|..|..++..|...+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666667777777777777665543
No 147
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.31 E-value=91 Score=33.36 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=1.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
..+......+..|..+...-+++...|..+....
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a 445 (575)
T 2i1j_A 412 DEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDA 445 (575)
T ss_dssp ------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444433444333333
No 148
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.71 E-value=3e+02 Score=24.08 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHhHhhhhh-hhhhhhchHHHHhhhHHHH
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKIS----QLRDESAALNMKRASLEERLKLLEADKDS-WTQMESVSKETIAGLSVDI 249 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~----~L~~e~~~L~qKQ~~LEERisQFKaERDs-WLkkEIsLke~Issl~~~~ 249 (474)
+..++++|+.++..+.++|.+.=.+.. .....+.........+++|+..+.+.++. +.+.
T Consensus 7 i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~--------------- 71 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKS--------------- 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH---------------
Confidence 455666666666666555544322222 11222223333344466777777443322 1221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 250 TQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (474)
Q Consensus 250 ~sLq~QV~~LEesl~sL~eEiq~LkeqIseL 280 (474)
.....+...+.-++.|..++......|+.+
T Consensus 72 -~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 72 -QYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345566666666666666666666655
No 149
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=28.60 E-value=89 Score=26.32 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHHHhhhhhhhhhh
Q 011943 90 LEETVKHLRNERESHIQ 106 (474)
Q Consensus 90 ~eeti~~l~~e~d~~~~ 106 (474)
+.|-+-.++.|-|...+
T Consensus 12 l~ELLD~ir~Efe~~~~ 28 (92)
T 3vp9_A 12 LNELLDAIRQEFLQVSQ 28 (92)
T ss_dssp -----CCTTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555556666665433
No 150
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.94 E-value=1e+02 Score=23.32 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
.-+..|..+|..|+.....|..++..|...+..|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555443
No 151
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.92 E-value=1e+02 Score=31.69 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=21.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 294 TSEQKDFSTQIEAAGALIDKLITENIELVEK 324 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~RK~LwrEnakL~ek 324 (474)
..+...++.++-.....|+.|.-+-..|...
T Consensus 30 ~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 30 AAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455555666667778888888887777653
No 152
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.83 E-value=2.8e+02 Score=28.72 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 252 Lq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
+-.++..|.+....+..+.+.|+...+.+..+|..+ ++. ..+...|..+...+.+..+.|=.+-..+.++++++.
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR--RKK-GEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTS-CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888777754 111 123445555555555555555555555555555554
No 153
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.55 E-value=2.4e+02 Score=22.64 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
+.++..|...|..|...+..++..+..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666666666666666666654
No 154
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.25 E-value=2.5e+02 Score=22.76 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 011943 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (474)
Q Consensus 156 ~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa 194 (474)
..|..|++.....-+.-..|.++|-.+--|+..+.++..
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444455555555544444444433
No 155
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.11 E-value=3.1e+02 Score=28.07 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 253 q~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
-.++..|.+....+..+.+.|+...+.+..++..+ ++. ..+...|..+...+.+..+.|=.+-..+.+++.++.
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKL--KRE-GKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG--GSS-CSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666543 111 122334444444444444444444444444555554
No 156
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.02 E-value=2.8e+02 Score=23.31 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L 210 (474)
..++.++..|+..++.+.+....++.++..+....+-+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555555555555555544433
No 157
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.99 E-value=2.2e+02 Score=23.01 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011943 269 ENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLS 329 (474)
Q Consensus 269 Eiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~ 329 (474)
+|+.|..++.+-+.+|..+ ..-+..|+..+..-.+..|+|-.+..-+.-+.|.|-
T Consensus 4 QNKeL~~kl~~Kq~EI~rL------nvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFEL------KKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444454444444444 444555666667777777777777766666666664
No 158
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=26.87 E-value=3.1e+02 Score=23.66 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=28.9
Q ss_pred HHHHHHhHh-hhhhh-hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 011943 218 EERLKLLEA-DKDSW-TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNL 266 (474)
Q Consensus 218 EERisQFKa-ERDsW-LkkEI-sLke~Issl~~~~~sLq~QV~~LEesl~sL 266 (474)
++|+.+|++ +.|.| |+++. .|.+...-+-.....|..-+..|+.-+.+.
T Consensus 35 ~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~ 86 (116)
T 3mxz_A 35 AAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAEL 86 (116)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 446666644 35666 55555 666666666666666666666665555543
No 159
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.62 E-value=5.9e+02 Score=26.85 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 011943 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEA 152 (474)
Q Consensus 113 e~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQkeA 152 (474)
..|..|+++-..+..++ ++|+.+++...+.+.
T Consensus 70 ~~~~~ld~~~r~~~~~~--------~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 70 PGIISTWQELRQLREQI--------RSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 34555555555555554 344444444444433
No 160
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.43 E-value=2.5e+02 Score=22.50 Aligned_cols=36 Identities=8% Similarity=0.279 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 011943 297 QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 332 (474)
Q Consensus 297 ~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l 332 (474)
...|..+++.+....+.|-..-..+..+..+|..+|
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666665444
No 161
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.24 E-value=5.2e+02 Score=26.87 Aligned_cols=46 Identities=26% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
.+..+...+.....++..|+..+++....|+.|+..|..|....++
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444445555555555666667777777777777666553
No 162
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.21 E-value=3.1e+02 Score=23.51 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~e~ 207 (474)
-||+++++.++=.+-.+..++.++.+. +.+++.+.....+.-..++..+..|+...
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~--------------~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQ--------------LAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777776666666666554433 45555555444444444444444444333
No 163
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.19 E-value=1.1e+02 Score=21.80 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
..||++....++.+...+|.++..|+.-...
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4677777777777777777777777665443
No 164
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.08 E-value=94 Score=21.29 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 011943 259 LEESRNNLLQENRQLKENVSSLRSQ 283 (474)
Q Consensus 259 LEesl~sL~eEiq~LkeqIseL~~~ 283 (474)
|++++..|..=+|.|++.++.|+..
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 165
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.66 E-value=2.8e+02 Score=22.72 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=2.8
Q ss_pred HHHHhhhhhh
Q 011943 319 IELVEKVNDL 328 (474)
Q Consensus 319 akL~ekvneL 328 (474)
+++.+++.+|
T Consensus 61 ~r~~~ri~el 70 (77)
T 2w83_C 61 LKLEEKNREL 70 (77)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 166
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.50 E-value=44 Score=35.77 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~QkEa~LEe~IkqLq~EI~~ 188 (474)
+.++.+...+.++...+|.....|+......+..+..|+.++..++.++..
T Consensus 373 ~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~ 423 (575)
T 2i1j_A 373 RQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSR 423 (575)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555554455555554444444444
No 167
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=25.34 E-value=3.4e+02 Score=23.74 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHh
Q 011943 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 226 (474)
Q Consensus 182 Lq~EI~~llqKEa~LeeeL~~L~~e~~~L~qKQ~~LEERisQFKa 226 (474)
|+.++..+......+......|+.+...|..+.-.|++++..+..
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~ 78 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQ 78 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333344444444433
No 168
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.84 E-value=3.2e+02 Score=23.27 Aligned_cols=34 Identities=26% Similarity=0.168 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011943 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (474)
Q Consensus 133 leEkikQLe~E~~~~lQkeA~lE~kIkdLq~~~~ 166 (474)
+.++|.+|+.++=++-.++..-.-.|.+|+..+.
T Consensus 54 Lh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (106)
T 1j1d_B 54 LWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHH
Confidence 4455566777777776666666667777666543
No 169
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=24.84 E-value=2.6e+02 Score=23.72 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHhHhh-h-hhh-hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHH
Q 011943 218 EERLKLLEAD-K-DSW-TQMES-VSKETIAGLSVDITQLRMQVVELEES 262 (474)
Q Consensus 218 EERisQFKaE-R-DsW-LkkEI-sLke~Issl~~~~~sLq~QV~~LEes 262 (474)
++|+.+|+++ . |.| |+++. .|.+...-+-.....|..-+..|+.-
T Consensus 31 ~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~ 79 (106)
T 1qsd_A 31 EAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQF 79 (106)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3467777554 3 444 44444 55555544444444444444444443
No 170
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.68 E-value=6.6e+02 Score=26.77 Aligned_cols=93 Identities=11% Similarity=0.138 Sum_probs=51.3
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 011943 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQ 138 (474)
Q Consensus 59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEkik 138 (474)
|...-||+|-.. ++.++..|= -+--+|..|++-.+.+.|.-. .+..+...+..++..++.
T Consensus 41 DwGvkCPSGCrL-------qglL~kqer--dv~~rI~kLkn~L~~~s~s~~-----------~s~~y~~~~~~~lk~~~~ 100 (491)
T 1m1j_A 41 DWGTKCPSGCRM-------QGIIDDTDQ--NYSQRIDNIRQQLADSQNKYK-----------TSNRVIVETINILKPGLE 100 (491)
T ss_dssp STTTEECCSTTH-------HHHHHHHHH--HHHHHHHHHHHHHHHHHHTTT-----------HHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccch-------hhHHHHhhh--hHHHHHHHHHHHHHHHHhhcc-----------hHHHHHHHHHHHHHHHHh
Confidence 677789999641 223333333 344566666666655544333 333334444444555545
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHh
Q 011943 139 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 171 (474)
Q Consensus 139 QLe~E~~~~lQkeA~lE~kIkdLq~~~~s~~Qk 171 (474)
|..+--+-+-+--..||.+|..|+.++..+.++
T Consensus 101 q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~ 133 (491)
T 1m1j_A 101 GAQQLDENYGHVSTELRRRIVTLKQRVATQVNR 133 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444455555556777777777777666543
No 171
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.68 E-value=1.4e+02 Score=24.26 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 254 ~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
..|+.++-.+..+..++..++..|.+++..++++
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 3344444444444444455555555555555544
No 172
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.64 E-value=2.1e+02 Score=21.00 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=8.3
Q ss_pred HhHHHHHHHHHhhhhHHHH
Q 011943 152 ATLEETIKQLRNQNDLHIQ 170 (474)
Q Consensus 152 A~lE~kIkdLq~~~~s~~Q 170 (474)
|.+|-.++.|+++++....
T Consensus 6 aqlenevaslenenetlkk 24 (49)
T 3he5_A 6 AQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHH
Confidence 3444444444444444433
No 173
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.40 E-value=1.8e+02 Score=24.19 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKL 314 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~L 314 (474)
+-...|++++..+.+|..++.+++. ....+...+...|..++..++.+ ..+....-..+..+.+.+=.|
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~---~~~~e~~~~q~~i~~lE~eL~~~------r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELED---LLAKEKDNSRRMLTDKEREMAEI------RDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
No 174
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.18 E-value=1.3e+02 Score=23.60 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHh-Hhhhhhhhhhhh-chHHHHhhhHHHHHHHHHH
Q 011943 200 ISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMES-VSKETIAGLSVDITQLRMQ 255 (474)
Q Consensus 200 L~~L~~e~~~L~qKQ~~LEERisQF-KaERDsWLkkEI-sLke~Issl~~~~~sLq~Q 255 (474)
+.+--.-+.+|.+-++ |+.|| |- +.-+..|+ -++..|..++.++..|+.|
T Consensus 12 ~qeylevK~ALaaSeA----kiQQLmkV--N~~ls~Elr~mQ~~lq~LQsen~~Lr~q 63 (63)
T 2w6a_A 12 LQEYLELKKALATSEA----KVQQLMKV--NSSLSDELRKLQREIHKLQAENLQLRQP 63 (63)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhHH----HHHHHHHH--hHhhhHHHHHHHHHHHHHHhhhhhhccC
No 175
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.18 E-value=2e+02 Score=21.97 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 011943 265 NLLQENRQL 273 (474)
Q Consensus 265 sL~eEiq~L 273 (474)
.|..|++.|
T Consensus 48 ~L~~E~~~L 56 (63)
T 1ci6_A 48 SLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334433
No 176
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.00 E-value=71 Score=21.91 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 243 AGLSVDITQLRMQVVELEESRNNLLQENR 271 (474)
Q Consensus 243 ssl~~~~~sLq~QV~~LEesl~sL~eEiq 271 (474)
+++..+...|+.=|+.|++++.-|+..+|
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666666554
No 177
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.87 E-value=89 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 138 kQLe~E~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
.||++....++.....+|..+..|+.-..+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 567777777777777777777777765544
No 178
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.73 E-value=1e+02 Score=25.07 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (474)
Q Consensus 249 ~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~ 281 (474)
|..|+.+...+......|..+++.|+.++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555666666666666666553
No 179
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.43 E-value=4.7e+02 Score=24.58 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHhhhhH
Q 011943 118 LQNECDLYKEKVQATLEETIQQLQRQ-NDLRMQKEATLEETIKQLRNQNDL 167 (474)
Q Consensus 118 LqeEi~~lkqkLE~lleEkikQLe~E-~~~~lQkeA~lE~kIkdLq~~~~s 167 (474)
|+.+++.+...++-...++ .+.+.+ +..++.-..+...+|++|++....
T Consensus 151 l~~~~~~l~~qlE~~v~~K-~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAK-EALETDLYKRFILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444444 333332 345666677777788888766543
No 180
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.10 E-value=2.6e+02 Score=21.55 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=5.4
Q ss_pred HHHHhhHHHHHHHHH
Q 011943 128 KVQATLEETIQQLQR 142 (474)
Q Consensus 128 kLE~lleEkikQLe~ 142 (474)
+++.....++..|..
T Consensus 28 EaE~~y~~k~eel~~ 42 (77)
T 3trt_A 28 EAEEWYKSKFADLSE 42 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 181
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.02 E-value=1.7e+02 Score=21.42 Aligned_cols=9 Identities=56% Similarity=0.804 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 011943 154 LEETIKQLR 162 (474)
Q Consensus 154 lE~kIkdLq 162 (474)
+|..|+.|+
T Consensus 36 lekeianlr 44 (49)
T 3he5_A 36 LEKEIANLR 44 (49)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
No 182
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.00 E-value=98 Score=20.89 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 011943 110 TLEGTVQQLQNECDLYKEKVQAT 132 (474)
Q Consensus 110 ~~Ee~IkqLqeEi~~lkqkLE~l 132 (474)
.+|+.|..|+..+..+..+|+++
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888887764
No 183
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.80 E-value=79 Score=25.64 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=32.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (474)
Q Consensus 237 sLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lke 275 (474)
-|-..+..++..+.++..+|..++-.+.+++..++.|..
T Consensus 5 Gl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 5 GLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 345577888889999999999999999999999998864
No 184
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.75 E-value=2.4e+02 Score=23.40 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011943 267 LQENRQLKENVSSLRSQL 284 (474)
Q Consensus 267 ~eEiq~LkeqIseL~~~i 284 (474)
.+||..|...|..++..+
T Consensus 45 L~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 185
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.66 E-value=3.7e+02 Score=23.17 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (474)
Q Consensus 173 a~LEe~IkqLq~EI~~llqKEa~LeeeL~~L 203 (474)
..+.+++..|+.+|..+.+....+...+...
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 186
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=22.52 E-value=5.8e+02 Score=25.36 Aligned_cols=46 Identities=7% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011943 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (474)
Q Consensus 241 ~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iqt 286 (474)
.+.........+...+...-..+..+...=+.+...+..+...+.+
T Consensus 251 ~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~ 296 (346)
T 2nrj_A 251 VVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIEN 296 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444445555555555555555554444443
No 187
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.46 E-value=4.8e+02 Score=27.53 Aligned_cols=30 Identities=3% Similarity=-0.046 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011943 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKE 151 (474)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~lleEkikQLe~E~~~~lQke 151 (474)
.|..|+++-..+..++ ++|+.+++...+.+
T Consensus 34 ~~~~ld~~~r~~~~~~--------~~l~~~rn~~sk~i 63 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDL--------DEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3444555544444443 34444444444444
No 188
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.46 E-value=60 Score=32.66 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=22.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 242 Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
|..++..+..+..++..|+..+.++...|+.|..+|..|.....
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555555555555566666666666666655444
No 189
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.28 E-value=1.1e+02 Score=24.32 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=7.4
Q ss_pred hhhhhhhHHHHHHHHHH
Q 011943 294 TSEQKDFSTQIEAAGAL 310 (474)
Q Consensus 294 ~~E~~dLksQiEal~d~ 310 (474)
..++..|+.++..+..+
T Consensus 49 ~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 190
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.08 E-value=1.8e+02 Score=24.11 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 247 VDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (474)
Q Consensus 247 ~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIs 278 (474)
.+|..|-.+|..+++.+..+.++++.|++-+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666655443
No 191
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.29 E-value=2e+02 Score=21.11 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205 (474)
Q Consensus 174 ~LEe~IkqLq~EI~~llqKEa~LeeeL~~L~~ 205 (474)
.|-++|.++-.||+...++-+.+..++.+|+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777666643
No 192
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.26 E-value=3.2e+02 Score=28.87 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=26.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (474)
Q Consensus 240 e~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~Lke 275 (474)
..|-.+......++.++..|+..++.+..+|-+++.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566677777888888888888888888877654
No 193
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.00 E-value=3.7e+02 Score=22.58 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 011943 61 DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETI 137 (474)
Q Consensus 61 ~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ee~IkqLqeEi~~lkqkLE~lleEki 137 (474)
.+-+-+-.+|.-+.+||+=. -- ++.|--+++ +.||...+.|-.|+.|-++|+.|.++ +-.=+-+|
T Consensus 11 ~~RP~~~~~v~~l~~AekWR----~q--vikEIs~Kv-----~~Iqn~~L~E~~IRdLNDEINkL~rE-K~~WE~rI 75 (92)
T 1x4t_A 11 ERRPFLASECTELPKAEKWR----RQ--IIGEISKKV-----AQIQNAGLGEFRIRDLNDEINKLLRE-KGHWEVRI 75 (92)
T ss_dssp CCCCSCTTTCCCHHHHHHHH----HH--HHHHHHHHH-----HHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred ccCCCChhhcCCHHHHHHHH----HH--HHHHHHHHH-----HHhhCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34455668899999998621 11 333333332 46888888888888888888887777 44344443
No 194
>2nnu_B HUNK1 protein, bromodomain-containing protein 4; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Homo sapiens}
Probab=20.96 E-value=49 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 011943 79 QHLLQREAMAILEETV 94 (474)
Q Consensus 79 ~~~~q~e~~~~~eeti 94 (474)
+|.+|-..|++|||.+
T Consensus 6 DMn~QSDlMa~FEenL 21 (26)
T 2nnu_B 6 DMNFQSDLLSIFEENL 21 (26)
T ss_pred cchhHHHHHHHHHHHh
Confidence 5889999999999976
No 195
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.93 E-value=1.2e+02 Score=21.34 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011943 137 IQQLQRQNDLRMQKEATLEETIKQLRN 163 (474)
Q Consensus 137 ikQLe~E~~~~lQkeA~lE~kIkdLq~ 163 (474)
..||++....+++....+|..+..|++
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 466777777777777777777766664
No 196
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.79 E-value=3.1e+02 Score=23.75 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHhH-hhhhhhhh-----------------
Q 011943 175 LEMNIANLQSEKEFWLQKEAALEQKISQL---RDESAALNMKRASLEERLKLLE-ADKDSWTQ----------------- 233 (474)
Q Consensus 175 LEe~IkqLq~EI~~llqKEa~LeeeL~~L---~~e~~~L~qKQ~~LEERisQFK-aERDsWLk----------------- 233 (474)
+..++.+|...+..+.+....+..++..| .........--. .+..|. .+.+.++-
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~----~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V 82 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLE----NLKKIEEEKPEILVPIGAGSFLKGVIVDKNNA 82 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHTTCCCSSCEEEEECSSSCEEEEECSCTTEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccCCceEEEEcCCCeEEEEEECCCCEE
Q ss_pred ---------hhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011943 234 ---------MESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (474)
Q Consensus 234 ---------kEIsLke~Issl~~~~~sLq~QV~~LEesl~sL~eEiq~LkeqIseL~~~iq 285 (474)
=|-++.+-+.-++..+..|...+..+++.+..+...+..+...+..+....+
T Consensus 83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 197
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=20.65 E-value=8.3e+02 Score=26.46 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011943 258 ELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (474)
Q Consensus 258 ~LEesl~sL~eEiq~LkeqIseL~~~iqtl 287 (474)
.++.-.+.+-+-+.+++.++..+..-.+.+
T Consensus 147 ~lQ~w~e~lae~l~q~rqql~~l~~l~~~~ 176 (585)
T 1y1u_A 147 VLQSWCEKLAEIIWQNRQQIRRAEHLCQQL 176 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 344455566666777777777655444433
No 198
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.54 E-value=1.6e+02 Score=25.02 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALN 211 (474)
Q Consensus 176 Ee~IkqLq~EI~~llqKEa~LeeeL~~L~~e~~~L~ 211 (474)
..++..|+.|+..+..+|..|.+.|..++.....+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888888888876665554
No 199
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.51 E-value=4.6e+02 Score=23.43 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 011943 260 EESRNNLLQENRQLKENVSSLRSQLSSDESKKHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 333 (474)
Q Consensus 260 Eesl~sL~eEiq~LkeqIseL~~~iqtle~~~~~~~E~~dLksQiEal~d~RK~LwrEnakL~ekvneL~~~l~ 333 (474)
++...-|.+.+..|...+.....-+..+ .+......+..+..+....+.-....+|+.++.+|+
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~L~~~L----------~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQLARML----------VEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444443333322 233333455555555555566666667777776664
No 200
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.37 E-value=3.9e+02 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 011943 263 RNNLLQENRQLKENVS 278 (474)
Q Consensus 263 l~sL~eEiq~LkeqIs 278 (474)
...+...+.+|+.+|.
T Consensus 78 ~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 78 KYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444443
No 201
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.04 E-value=1.4e+02 Score=23.08 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011943 249 ITQLRMQVVELEESRNNLLQENRQL 273 (474)
Q Consensus 249 ~~sLq~QV~~LEesl~sL~eEiq~L 273 (474)
+..|..+|..|+.....|..++..|
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
Done!