BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011947
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of
3-Phosphoshikimate 1- Carboxyvinyltransferase From
Vibrio Cholerae In Complex With Shikimate-3-Phosphate
(Partially Photolyzed) And Glyphosate
Length = 450
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/406 (49%), Positives = 250/406 (61%), Gaps = 16/406 (3%)
Query: 68 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFL 127
GTT + NLL S+DI HML+AL KLG+N VEG G F T +ELFL
Sbjct: 61 GTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAF----HTTQPLELFL 116
Query: 128 GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPP 187
GNAGTAMRPL AA+ G+ Y+L G PRM+ERPIG LV L+Q GA ++ + N PP
Sbjct: 117 GNAGTAMRPLAAALCLGQGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPP 174
Query: 188 VRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLM 247
+RI Q+ G V I+I+ +L+S PY+++TL +M
Sbjct: 175 LRIQGTGLQAGTVTIDGSISS-QFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIM 233
Query: 248 ERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGT 307
E+FGV V + D + F I GQ Y SPG VEGDASSASYF G G
Sbjct: 234 EQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGK 292
Query: 308 SSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLA 367
+S+QGD++FA+ LEKMGA++ W ++ V R L AVD++ N +PD AMT+A
Sbjct: 293 NSIQGDIQFADALEKMGAQIEWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIA 344
Query: 368 VVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAI 427
ALFA G TAIR+V +WRVKET+R+ A+ TELRK+GATVEEG D+ VITPP KL AAI
Sbjct: 345 TTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPPTKLIHAAI 404
Query: 428 DTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
DTYDDHRMAM FSL A +D PVTI DP CT KTFPDYFD +++
Sbjct: 405 DTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLSR 450
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate And Glyphosate
pdb|1G6T|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate
pdb|1X8R|A Chain A, Epsps Liganded With The (s)-phosphonate Analog Of The
Tetrahedral Reaction Intermediate
pdb|1X8T|A Chain A, Epsps Liganded With The (r)-phosphonate Analog Of The
Tetrahedral Reaction Intermediate
pdb|2AA9|A Chain A, Epsp Synthase Liganded With Shikimate
pdb|2AAY|A Chain A, Epsp Synthase Liganded With Shikimate And Glyphosate
pdb|2PQ9|A Chain A, E. Coli Epsps Liganded With (R)-Difluoromethyl Tetrahedral
Reaction Intermediate Analog
Length = 427
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 248/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGTAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate
5-enol- Pyruvylshikimate-3-phosphate Synthase: A
Distinctive Protein Fold
Length = 427
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 248/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGTAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTRLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p
pdb|3FJZ|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p And
Glyphosate
Length = 427
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 247/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAG AMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGIAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded
With Shikimate-3-Phosphate
Length = 427
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 247/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNA TAMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAATAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p
pdb|2QFT|A Chain A, E.Coli Epsp Synthase Pro101ser Liganded With S3p And
Glyphosate
Length = 427
Score = 343 bits (881), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 247/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMR L AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGTAMRSLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p
pdb|2QFU|A Chain A, E.Coli Epsp Synthase Pro101leu Liganded With S3p And
Glyphosate
Length = 427
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 247/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMR L AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGTAMRLLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p
pdb|3FK1|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p
And Glyphosate
Length = 427
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 184/407 (45%), Positives = 246/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAG AMR L AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGIAMRSLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +PD AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPDAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral
Reaction Intermediate
Length = 427
Score = 332 bits (850), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 247/407 (60%), Gaps = 17/407 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 36 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 92 LGNAGTAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 150 PLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 207
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
M+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF G G
Sbjct: 208 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIG 266
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
+S+QGD++FA+VLEKMGA + W ++ ++ T R L A+D++MN +P AMT+
Sbjct: 267 RNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMNHIPAAAMTI 318
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY ITPPEKL A
Sbjct: 319 ATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAE 378
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 379 IATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|B Chain B, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|C Chain C, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|D Chain D, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
Length = 228
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 68 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFL 127
GTT + NLL S+DI HML+AL KLG+N VEG G F T +ELFL
Sbjct: 22 GTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAF----HTTQPLELFL 77
Query: 128 GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPP 187
GNAGTAMRPL AA+ G+ Y+L G PRM+ERPIG LV L+Q GA ++ + N PP
Sbjct: 78 GNAGTAMRPLAAALCLGQGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPP 135
Query: 188 VRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLM 247
+RI Q+ G V I+I+ +L+S PY+++TL +M
Sbjct: 136 LRIQ-GTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIM 194
Query: 248 ERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282
E+FGV V + D + F I GQ Y SPG VEGD
Sbjct: 195 EQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGD 228
>pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N-
Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate
Synthase
pdb|1P89|A Chain A, Substrate-Induced Structural Changes To The Isolated
N-Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate
Synthase
Length = 216
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
G TV+ NLL S+D+ HML+AL LG++ R + G GG PL + G +ELF
Sbjct: 12 HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PLHAE--GALELF 67
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA + + N P
Sbjct: 68 LGNAGTAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYP 125
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q+ + I I L+S PY+++TL L
Sbjct: 126 PLRLQ--GGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNL 183
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVE 280
M+ FGV +E+ + +F ++GGQ Y+SPG VE
Sbjct: 184 MKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVE 216
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3ROI|B Chain B, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3SLH|A Chain A, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|B Chain B, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|C Chain C, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|D Chain D, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|4EGR|A Chain A, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|B Chain B, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|C Chain C, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|D Chain D, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|E Chain E, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|F Chain F, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
Length = 441
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 179/410 (43%), Gaps = 24/410 (5%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G T VD L D M+ AL+++G +++ +VEG G + Q L
Sbjct: 38 EGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVG----MTGLQAPPEALD 93
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
GN+GTA+R L+ + AG + +L G ++ RP+ ++ L +GA +D N P
Sbjct: 94 CGNSGTAIRLLSGLL--AGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDST--GNVP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P++I Q G I P + T +L
Sbjct: 150 PLKI-YGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITE-----PAPSRDHTERL 203
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
++ F ++ + GG K K+ + + GD SSA++F C
Sbjct: 204 LKHFHYTLQKDKQS--ICVSGGGKLKA-NDISIPGDISSAAFFIVAATITPGSAIRL-CR 259
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK-HLRAVDVNMNKMP---DV 362
+ +L+ MGA + T + P D R L+ +D+ +++P D
Sbjct: 260 VGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDE 319
Query: 363 AMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKL 422
L + A A G T +RD A RVKET+R+ A+ L+KLG E PD VI L
Sbjct: 320 FPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPD-GVIIQGGTL 378
Query: 423 KVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471
+ +++YDDHR+AMAF++A A PV I++ + +FP++ ++ + V
Sbjct: 379 EGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEV 428
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-
Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In
A Second Conformational State
Length = 462
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 179/410 (43%), Gaps = 24/410 (5%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G T VD L D M+ AL+++G +++ +VEG G + Q L
Sbjct: 59 EGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVG----MTGLQAPPEALD 114
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
GN+GTA+R L+ + AG + +L G ++ RP+ ++ L +GA +D N P
Sbjct: 115 CGNSGTAIRLLSGLL--AGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDST--GNVP 170
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P++I Q G I P + T +L
Sbjct: 171 PLKI-YGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITE-----PAPSRDHTERL 224
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
++ F ++ + GG K K+ + + GD SSA++F C
Sbjct: 225 LKHFHYTLQKDKQ--SICVSGGGKLKA-NDISIPGDISSAAFFIVAATITPGSAIRL-CR 280
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK-HLRAVDVNMNKMP---DV 362
+ +L+ MGA + T + P D R L+ +D+ +++P D
Sbjct: 281 VGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDE 340
Query: 363 AMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKL 422
L + A A G T +RD A RVKET+R+ A+ L+KLG E PD VI L
Sbjct: 341 FPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPD-GVIIQGGTL 399
Query: 423 KVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471
+ +++YDDHR+AMAF++A A PV I++ + +FP++ ++ + V
Sbjct: 400 EGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEV 449
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate
1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
Length = 441
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 173/410 (42%), Gaps = 24/410 (5%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G T VD L D + AL++ G +++ +VEG G A + L
Sbjct: 38 EGQTQVDGFLXGADNLAXVSALQQXGASIQVIEDENILVVEGVGXTGLQAPPEA----LD 93
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
GN+GTA+R L+ + AG + +L G ++ RP ++ L GA +D N P
Sbjct: 94 CGNSGTAIRLLSGLL--AGQPFNTVLTGDSSLQRRPXKRIIDPLTLXGAKIDST--GNVP 149
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P++I Q G I P + T +L
Sbjct: 150 PLKI-YGNPRLTGIHYQLPXASAQVKSCLLLAGLYARGKTCITE-----PAPSRDHTERL 203
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCG 306
++ F ++ + GG K K+ + + GD SSA++F C
Sbjct: 204 LKHFHYTLQKDKQS--ICVSGGGKLKA-NDISIPGDISSAAFFIVAATITPGSAIRL-CR 259
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK-HLRAVDVNMNKMP---DV 362
+ +L+ GA + T + P D R L+ +D+ +++P D
Sbjct: 260 VGVNPTRLGVINLLKXXGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDE 319
Query: 363 AMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKL 422
L + A A G T +RD A RVKET+R+ A L+KLG E PD VI L
Sbjct: 320 FPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAXVDGLQKLGIAAESLPD-GVIIQGGTL 378
Query: 423 KVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471
+ +++YDDHR+A AF++A A PV I++ + +FP++ ++ + V
Sbjct: 379 EGGEVNSYDDHRIAXAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEV 428
>pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded
State
Length = 462
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 169/407 (41%), Gaps = 41/407 (10%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVE---EDFAMKRAIVEGCGGLFPLAKQQTGEI 123
+G + + L S D MLDAL+ LGL V+ + + I G G
Sbjct: 41 RGASTISGALRSRDTELMLDALQTLGLRVDGVGSELTVSGRIEPGPGA------------ 88
Query: 124 ELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180
+ G AGT +R PL AA G++ DG + R RPI L+ L++LG VD
Sbjct: 89 RVDCGLAGTVLRFVPPL-----AALGSVPVTFDGDQQARGRPIAPLLDALRELGVAVD-- 141
Query: 181 LGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEII-DKLISVPY 239
GT P R+ Q+ + ++ L S P+
Sbjct: 142 -GTGLP-FRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPH 199
Query: 240 VEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXX 299
+ MT ++ + GV ++ S +R+ ++ G + +E D ++A F
Sbjct: 200 IAMTAAMLRQAGVDIDDSTP-NRWQVRPGPVAARRWD--IEPDLTNAVAFLSAAVVSGGT 256
Query: 300 XXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKM 359
G S+Q +L ++ A V ++S+ V GP DV++ +
Sbjct: 257 VRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGP-------TGYDGFDVDLRAV 309
Query: 360 PDVAMTLAVVALFADGPTAIR--DVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417
++ ++A +A A + R +A R ET+R+ A+ TE+ +LG T E PD VIT
Sbjct: 310 GELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVIT 369
Query: 418 PPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDY 464
L+ Y DHRMAMA ++ V + D + T KT P++
Sbjct: 370 -ATPLRPGIWRAYADHRMAMAGAIIGLRVAGVEVDDIAATTKTLPEF 415
>pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p (Partially Photolyzed)
pdb|2O0D|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p
pdb|2O0E|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p And Pep
pdb|2O0X|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
Intermediate
pdb|2O0Z|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
Product (Eps)
pdb|2O15|A Chain A, Mycobacterium Tuberculosis Epsp Synthase After Partial
Products Withdrawal
Length = 450
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 169/407 (41%), Gaps = 41/407 (10%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVE---EDFAMKRAIVEGCGGLFPLAKQQTGEI 123
+G + + L S D MLDAL+ LGL V+ + + I G G
Sbjct: 41 RGASTISGALRSRDTELMLDALQTLGLRVDGVGSELTVSGRIEPGPGA------------ 88
Query: 124 ELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180
+ G AGT +R PL AA G++ DG + R RPI L+ L++LG VD
Sbjct: 89 RVDCGLAGTVLRFVPPL-----AALGSVPVTFDGDQQARGRPIAPLLDALRELGVAVD-- 141
Query: 181 LGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEII-DKLISVPY 239
GT P R+ Q+ + ++ L S P+
Sbjct: 142 -GTGLP-FRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPH 199
Query: 240 VEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXX 299
+ MT ++ + GV ++ S +R+ ++ G + +E D ++A F
Sbjct: 200 IAMTAAMLRQAGVDIDDSTP-NRWQVRPGPVAARRWD--IEPDLTNAVAFLSAAVVSGGT 256
Query: 300 XXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKM 359
G S+Q +L ++ A V ++S+ V GP DV++ +
Sbjct: 257 VRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGP-------TGYDGFDVDLRAV 309
Query: 360 PDVAMTLAVVALFADGPTAIR--DVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417
++ ++A +A A + R +A R ET+R+ A+ TE+ +LG T E PD VIT
Sbjct: 310 GELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVIT 369
Query: 418 PPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDY 464
L+ Y DHRMAMA ++ V + D + T KT P++
Sbjct: 370 -ATPLRPGIWRAYADHRMAMAGAIIGLRVAGVEVDDIAATTKTLPEF 415
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF5|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF6|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
Length = 427
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 179/413 (43%), Gaps = 30/413 (7%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G T V ++L ED+ + + LG+ +E+ + V+G G +A + + L
Sbjct: 34 EGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGV--ITVQGVG----MAGLKAPQNALN 87
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
+GN+GT++R ++ + AG + + G + +RP+ + LK++G + + P
Sbjct: 88 MGNSGTSIRLISGVL--AGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLP 145
Query: 187 PVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKL 246
P+R+ Q G E II+K + + E +
Sbjct: 146 PLRLKGTKNLRPIHYELPIASA-QVKSALMFAALQAKG--ESVIIEKEYTRNHTE---DM 199
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXX-XXXXXXEGC 305
+++FG + S + +QG QK V GD SSA+++ +
Sbjct: 200 LQQFGGHL--SVDGKKITVQGPQKLTGQ-KVVVPGDISSAAFWLVAGLIAPNSRLVLQNV 256
Query: 306 GTSSLQGDVKFAEVLEKMGAKVTWTE-----NSVTVTGPPRDPYGRKHLRAVDVNMNKMP 360
G + + + +V+ MG K+ TE S T+ D G + A+ + ++
Sbjct: 257 GINETRTGI--IDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGAL---IPRLI 311
Query: 361 DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE 420
D +A++A A G T I+D +VKET+R+ + L +GA + D +I
Sbjct: 312 DELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKS 371
Query: 421 KLKVAAIDTYDDHRMAMAFSLAA--CADVPVTIKDPSCTRKTFPDYFDVLDSV 471
L A ++T+ DHR+ M ++AA AD V + ++P +FD L+S+
Sbjct: 372 ALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESL 424
>pdb|3RMT|A Chain A, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|B Chain B, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|C Chain C, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|D Chain D, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
Length = 455
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 174/412 (42%), Gaps = 31/412 (7%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG--GLFPLAKQQTGEIE 124
+GTT V+ L D + +KLG+++E+ A +R V+G G GL ++ +I
Sbjct: 39 KGTTTVEGFLPGADCLSTISCFQKLGVSIEQ--AEERVTVKGKGWDGL-----REPSDI- 90
Query: 125 LFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTN 184
L +GN+GT R + ++ ++ G + +RP+ + LK +GA +D N
Sbjct: 91 LDVGNSGTTTRLILGILSTL--PFHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGN 148
Query: 185 CPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTL 244
P+ I Q G + K + T
Sbjct: 149 LTPLSIRGGQLKGIDFHSPVASA--QMKSAILLAGLRAEGKTSVTEPAK-----TRDHTE 201
Query: 245 KLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXX-XXXXXXE 303
+++E FGV +E I+GGQ + V GD SSA++F
Sbjct: 202 RMLEAFGVNIEKDGLT--VSIEGGQMLTGQ-HVVVPGDISSAAFFLVAGAMVPHSRITLT 258
Query: 304 GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD-PYGRKHLRAVDVNMNKMP-- 360
G + + + EVL++MGA + V P D L+ V++ + +P
Sbjct: 259 NVGINPTRAGI--LEVLKQMGATLAMENERVQGGEPVADLTIETSVLQGVEIGGDIIPRL 316
Query: 361 -DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPP 419
D +AV+A A G T I+D +VKET R+ + +EL KLGA++ D +I P
Sbjct: 317 IDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGP 376
Query: 420 EKLKVA-AIDTYDDHRMA-MAFSLAACADVPVTIKDPSCTRKTFPDYFDVLD 469
LK + ++ DHR+ A A+ PVT++ ++P +FD LD
Sbjct: 377 TPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPSFFDHLD 428
>pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl
Tetrahedral Reaction Intermediate Analog
Length = 445
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 377 TAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI--TPPEK----LKVAAIDTY 430
T + + RVKE++R+ A+ L+ G +EG V+ P K AA+ T+
Sbjct: 337 TVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATH 396
Query: 431 DDHRMAMAF-SLAACADVPVTIKDPSCTRKTFPDYFDVL 468
DHR+AM+F + ++ PVT+ D + +FP++ D++
Sbjct: 397 LDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLM 435
>pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And
Glyphosate
Length = 455
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 377 TAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI--TPPEK----LKVAAIDTY 430
T + + RVKE++R+ A+ L+ G +EG V+ P K AA+ T+
Sbjct: 342 TVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATH 401
Query: 431 DDHRMAMAF-SLAACADVPVTIKDPSCTRKTFPDYFDVL 468
DHR+AM+F + ++ PVT+ D + +FP++ D++
Sbjct: 402 LDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLM 440
>pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded)
pdb|2GG6|A Chain A, Cp4 Epsp Synthase Liganded With S3p
pdb|2GGA|A Chain A, Cp4 Epsp Synthase Liganded With S3p And Glyphosate
Length = 455
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 377 TAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI--TPPEK----LKVAAIDTY 430
T + + RVKE++R+ A+ L+ G +EG V+ P K AA+ T+
Sbjct: 342 TVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATH 401
Query: 431 DDHRMAMAF-SLAACADVPVTIKDPSCTRKTFPDYFDVL 468
DHR+AM+F + ++ PVT+ D + +FP++ D++
Sbjct: 402 LDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLM 440
>pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral
Intermediate Analog
pdb|2PQC|A Chain A, Cp4 Epsps Liganded With (R)-Phosphonate Tetrahedral
Reaction Intermediate Analog
Length = 445
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 377 TAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI--TPPEK----LKVAAIDTY 430
T + + RVKE++R+ A+ L+ G +EG V+ P K AA+ T+
Sbjct: 337 TVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATH 396
Query: 431 DDHRMAMAF-SLAACADVPVTIKDPSCTRKTFPDYFDVL 468
DHR+AM+F + ++ PVT+ D + +FP++ D++
Sbjct: 397 LDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLM 435
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 320 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADG 375
LE+MG ++ EN + V GP + L+AVDV P D+ + V+ + ++G
Sbjct: 291 LEEMGVQIIEEENGIRVIGPDK-------LKAVDVKTMPHPGFPTDMQSQMMVIQMLSEG 343
Query: 376 PTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAI 427
+ + + V R E E+R++ A ++ +I+ P KL+ A +
Sbjct: 344 TSIMTETVFENRFMHVE-------EMRRMNADMKIEGHSVIISGPAKLQGAEV 389
>pdb|2X3H|A Chain A, Coliphage K5a Lyase
pdb|2X3H|B Chain B, Coliphage K5a Lyase
pdb|2X3H|C Chain C, Coliphage K5a Lyase
Length = 542
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 86 DALKKLGLNVE-EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNA 130
DA + G+ VE D + ++ GC G L ++QT I F+G A
Sbjct: 314 DARQAHGVTVEGSDNVINNVLMSGCDGTNSLGQRQTATIARFIGTA 359
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 17/116 (14%)
Query: 320 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADG 375
+E+MG K+ V V GP + L+AVD+ P D+ + + L ADG
Sbjct: 292 MEEMGVKIIEENEGVRVIGPDK-------LKAVDIKTMPHPGFPTDMQSQMMALLLQADG 344
Query: 376 PTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYD 431
+ I + E E R++ A ++ ++ P L+ A + D
Sbjct: 345 TSMITETV------FENRFMHVEEFRRMNADIKIEGRSVIMNGPNSLQGAEVGATD 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,536,261
Number of Sequences: 62578
Number of extensions: 457524
Number of successful extensions: 1276
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 32
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)