Query 011947
Match_columns 474
No_of_seqs 294 out of 2373
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0128 AroA 5-enolpyruvylshik 100.0 9E-80 2E-84 613.3 46.3 415 22-474 8-427 (428)
2 PLN02338 3-phosphoshikimate 1- 100.0 2.2E-71 4.9E-76 575.9 50.9 435 23-473 8-442 (443)
3 PRK11861 bifunctional prephena 100.0 1.2E-70 2.7E-75 593.6 48.2 424 21-473 245-672 (673)
4 PRK11860 bifunctional 3-phosph 100.0 2.3E-70 5E-75 589.8 49.1 416 25-473 13-436 (661)
5 PF00275 EPSP_synthase: EPSP s 100.0 2.5E-68 5.3E-73 548.8 32.1 411 22-468 2-419 (419)
6 TIGR01356 aroA 3-phosphoshikim 100.0 4.3E-64 9.3E-69 517.0 48.0 407 29-474 1-409 (409)
7 cd01556 EPSP_synthase EPSP syn 100.0 1.6E-60 3.5E-65 490.8 48.6 405 27-471 1-409 (409)
8 cd01554 EPT-like Enol pyruvate 100.0 2.5E-59 5.4E-64 481.6 49.3 402 28-471 2-408 (408)
9 PRK02427 3-phosphoshikimate 1- 100.0 6.4E-58 1.4E-62 475.0 47.8 411 23-474 9-433 (435)
10 PRK14806 bifunctional cyclohex 100.0 5E-57 1.1E-61 496.1 46.5 408 22-474 307-729 (735)
11 cd01555 UdpNAET UDP-N-acetylgl 100.0 2.4E-52 5.2E-57 428.7 42.0 392 28-471 2-400 (400)
12 COG0766 MurA UDP-N-acetylgluco 100.0 3.7E-52 8E-57 401.1 37.4 401 21-474 6-414 (421)
13 PRK09369 UDP-N-acetylglucosami 100.0 1.5E-51 3.2E-56 424.6 42.4 401 22-474 7-413 (417)
14 TIGR01072 murA UDP-N-acetylglu 100.0 1.4E-49 3.1E-54 410.2 43.1 399 24-474 9-413 (416)
15 PRK12830 UDP-N-acetylglucosami 100.0 1.3E-49 2.8E-54 410.4 41.0 398 22-474 7-411 (417)
16 KOG0692 Pentafunctional AROM p 100.0 6E-51 1.3E-55 396.9 28.3 424 28-471 106-545 (595)
17 COG0128 AroA 5-enolpyruvylshik 100.0 4.6E-49 9.9E-54 393.1 31.0 334 25-407 82-428 (428)
18 TIGR01356 aroA 3-phosphoshikim 100.0 1.5E-42 3.3E-47 357.0 32.5 333 26-406 67-409 (409)
19 PRK02427 3-phosphoshikimate 1- 100.0 7.4E-41 1.6E-45 347.2 32.5 337 26-408 82-435 (435)
20 PLN02338 3-phosphoshikimate 1- 100.0 2.3E-39 5E-44 336.3 32.6 332 29-404 92-441 (443)
21 PRK11861 bifunctional prephena 100.0 2.2E-39 4.9E-44 350.4 33.0 330 28-404 323-671 (673)
22 PF00275 EPSP_synthase: EPSP s 100.0 1.6E-39 3.6E-44 334.7 20.8 324 28-400 83-419 (419)
23 PRK09369 UDP-N-acetylglucosami 100.0 9.9E-38 2.1E-42 321.8 32.3 318 33-408 89-415 (417)
24 PRK11860 bifunctional 3-phosph 100.0 4.6E-37 1E-41 331.5 33.4 350 28-419 87-450 (661)
25 PRK12830 UDP-N-acetylglucosami 100.0 2E-36 4.4E-41 312.2 33.6 302 67-412 106-417 (417)
26 cd01556 EPSP_synthase EPSP syn 100.0 1.9E-35 4.2E-40 304.3 31.6 328 28-403 73-409 (409)
27 cd01554 EPT-like Enol pyruvate 100.0 3.6E-34 7.7E-39 294.8 33.4 321 28-403 74-408 (408)
28 cd01555 UdpNAET UDP-N-acetylgl 100.0 2.1E-34 4.6E-39 295.7 31.3 312 34-403 79-400 (400)
29 TIGR01072 murA UDP-N-acetylglu 100.0 3.8E-34 8.3E-39 295.3 30.0 297 69-408 109-415 (416)
30 PRK14806 bifunctional cyclohex 100.0 8.7E-33 1.9E-37 304.2 31.8 332 28-411 386-734 (735)
31 COG0766 MurA UDP-N-acetylgluco 100.0 2.3E-32 5E-37 264.2 30.4 321 39-410 90-418 (421)
32 KOG0692 Pentafunctional AROM p 100.0 2.6E-28 5.7E-33 238.8 19.1 341 30-407 184-550 (595)
33 cd01553 EPT_RTPC-like This dom 99.9 9.4E-26 2E-30 210.5 17.3 175 280-471 7-211 (211)
34 cd01553 EPT_RTPC-like This dom 99.7 1.7E-16 3.7E-21 148.2 15.3 170 204-403 7-211 (211)
35 PF01137 RTC: RNA 3'-terminal 95.8 0.48 1E-05 44.6 15.6 179 62-256 19-226 (228)
36 COG0430 RCL1 RNA 3'-terminal p 93.3 1.3 2.8E-05 43.6 11.8 111 62-179 23-150 (341)
37 PRK04204 RNA 3'-terminal-phosp 90.5 7.3 0.00016 39.1 14.0 111 62-179 23-150 (343)
38 COG0430 RCL1 RNA 3'-terminal p 90.2 4.5 9.8E-05 39.9 11.7 91 163-256 46-150 (341)
39 cd00874 RNA_Cyclase_Class_II R 89.3 9.1 0.0002 38.1 13.5 114 288-409 15-146 (326)
40 TIGR03399 RNA_3prim_cycl RNA 3 88.8 16 0.00035 36.4 14.8 111 62-179 21-148 (326)
41 cd00874 RNA_Cyclase_Class_II R 88.6 10 0.00022 37.7 13.3 111 62-179 19-146 (326)
42 TIGR03399 RNA_3prim_cycl RNA 3 88.5 12 0.00026 37.3 13.7 114 288-409 17-148 (326)
43 cd00295 RNA_Cyclase RNA 3' pho 87.8 6.6 0.00014 39.3 11.5 110 62-178 19-145 (338)
44 TIGR03400 18S_RNA_Rcl1p 18S rR 87.6 16 0.00034 37.0 14.1 111 62-179 15-145 (360)
45 TIGR03400 18S_RNA_Rcl1p 18S rR 84.0 31 0.00066 35.0 14.1 120 132-256 7-145 (360)
46 PRK04204 RNA 3'-terminal-phosp 83.4 41 0.00088 33.8 14.6 121 131-256 14-150 (343)
47 cd00875 RNA_Cyclase_Class_I RN 82.8 24 0.00052 35.4 12.7 108 62-176 19-143 (341)
48 PF01137 RTC: RNA 3'-terminal 79.5 56 0.0012 30.8 13.9 185 213-410 15-227 (228)
49 cd00295 RNA_Cyclase RNA 3' pho 77.8 57 0.0012 32.7 13.5 118 209-329 10-146 (338)
50 cd00875 RNA_Cyclase_Class_I RN 76.1 86 0.0019 31.5 14.3 114 210-326 11-143 (341)
51 KOG3980 RNA 3'-terminal phosph 52.4 2.1E+02 0.0046 28.5 11.1 110 62-178 21-147 (361)
52 COG4274 Uncharacterized conser 50.3 97 0.0021 25.0 7.0 81 381-471 21-103 (104)
53 PF08734 GYD: GYD domain; Int 46.5 1.1E+02 0.0024 24.2 7.0 58 388-451 17-75 (91)
54 KOG3980 RNA 3'-terminal phosph 40.0 3.9E+02 0.0086 26.7 11.9 118 209-328 12-147 (361)
55 COG0547 TrpD Anthranilate phos 35.9 1.5E+02 0.0033 29.7 7.7 108 203-331 30-137 (338)
56 PF14085 DUF4265: Domain of un 33.2 41 0.00088 28.0 2.8 22 79-100 65-86 (117)
57 PRK14607 bifunctional glutamin 33.1 1.9E+02 0.0042 31.0 8.5 107 203-330 221-327 (534)
58 PRK00188 trpD anthranilate pho 30.5 1.8E+02 0.004 29.0 7.5 106 203-330 29-134 (339)
59 TIGR01245 trpD anthranilate ph 29.6 2.1E+02 0.0047 28.5 7.7 108 203-330 23-130 (330)
60 PRK07394 hypothetical protein; 29.4 2E+02 0.0044 28.8 7.5 88 77-179 57-144 (342)
61 PRK09522 bifunctional glutamin 28.8 1.9E+02 0.004 31.1 7.5 108 203-331 226-333 (531)
62 PHA02627 hypothetical protein; 28.6 40 0.00086 24.3 1.6 26 75-100 31-56 (73)
63 PF08286 Spc24: Spc24 subunit 27.8 2.1E+02 0.0045 23.7 6.2 54 164-217 60-115 (118)
64 PF06076 Orthopox_F14: Orthopo 26.5 47 0.001 23.9 1.7 26 75-100 31-56 (73)
65 PRK07394 hypothetical protein; 25.3 3.9E+02 0.0085 26.8 8.7 110 203-329 35-144 (342)
66 TIGR01245 trpD anthranilate ph 24.8 1.9E+02 0.0042 28.8 6.4 86 76-179 44-129 (330)
67 PHA02780 hypothetical protein; 24.1 55 0.0012 23.5 1.7 26 75-100 31-56 (73)
68 PF13541 ChlI: Subunit ChlI of 23.3 1.1E+02 0.0025 25.6 3.8 61 300-373 12-74 (121)
69 PRK08136 glycosyl transferase 22.5 5.1E+02 0.011 25.7 8.7 107 203-330 33-140 (317)
70 PF03484 B5: tRNA synthetase B 21.8 1.2E+02 0.0026 22.5 3.3 26 314-339 22-48 (70)
71 PLN02641 anthranilate phosphor 21.6 3.6E+02 0.0079 27.1 7.6 103 207-331 33-135 (343)
No 1
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-80 Score=613.30 Aligned_cols=415 Identities=41% Similarity=0.629 Sum_probs=368.7
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 101 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~ 101 (474)
.++...+++|.+|+||++++|+++ +|+|++|+++|+|.+.++|+..+++++++||++|+..+
T Consensus 8 ~~~~~l~G~v~~PgSKSishRali----------------laaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~-- 69 (428)
T COG0128 8 VKPSPLRGTVRAPGSKSISHRALL----------------LAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG-- 69 (428)
T ss_pred ccCCccceEEECCCCccHHHHHHH----------------HHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--
Confidence 356668999999999999999999 89999999999999999999999999999999999855
Q ss_pred ceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeC
Q 011947 102 KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 181 (474)
Q Consensus 102 ~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~ 181 (474)
..++|+|.++.+..+ ...+++|||||++|||++++++ ..++.++++|+.+|.+|||.+++++|+++|++++..+
T Consensus 70 ~~~~v~g~g~~~~~~-----~~~l~~GnSGTt~R~l~glla~-~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~ 143 (428)
T COG0128 70 DTLVVRGTGGELKEP-----PAVLDCGNSGTTLRLLTGLLAL-GSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGRE 143 (428)
T ss_pred CEEEEeCCCCCcCCC-----CceeeeccchhHHHHHHHHHhc-CCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecC
Confidence 579999986433333 3589999999999999998875 2458899999999999999999999999999999877
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 261 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~ 261 (474)
+++++|++|+|+ +..+.++++++.||||++++|++|++..+..++.......|++|+++|++||++||++|+.++.
T Consensus 144 ~~~~~Pl~i~G~--~~~~~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~-- 219 (428)
T COG0128 144 GEGYLPLTIKGG--LKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY-- 219 (428)
T ss_pred CCCcCCEEEECC--CCCceEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--
Confidence 667899999996 6788999999999999999999888876333333333467899999999999999999998864
Q ss_pred EEEEeCCCcccCCcceeecCCchhhHHHHHHHhcc-CCe-EEEeccCCCCccchhHHHHHHHHcCCEEEEecCeE-EEeC
Q 011947 262 RFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVT-GGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTG 338 (474)
Q Consensus 262 ~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~-~g~-~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i-~i~g 338 (474)
.+.|++++++. +.++.+|+|+|+|+||+++++++ +.+ +.++++..+ +.|..+++.|++||++|++.++.. +|.+
T Consensus 220 ~~~i~~g~~~~-~~~~~VpgD~SSAafflaAaai~~~~~~i~~~~v~~~--~~~~~~~~vl~~MGa~i~~~~~~~l~V~~ 296 (428)
T COG0128 220 RFYIPGGQKLT-PGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQPN--PTDKGILDVLEKMGADIEIGDDSVLRVRG 296 (428)
T ss_pred EEEECCCcccc-CceEEcCCChhhHHHHHHHHHhcCCCceeeeccCCcC--cchhHHHHHHHHcCCeEEEccCceEEEee
Confidence 79999887765 88999999999999999999998 555 777777542 345788999999999999998884 8887
Q ss_pred CCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeC
Q 011947 339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITP 418 (474)
Q Consensus 339 ~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g 418 (474)
.. .|+|++||..+.||.+|+++++|++|+|+|+|+|++++|+|||||+..+.++|++||+++++.+|+|.|+|
T Consensus 297 ~~-------~l~gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~I~g 369 (428)
T COG0128 297 SG-------ELKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLIITG 369 (428)
T ss_pred cC-------CccCeEeCcccCchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCeEEEEC
Confidence 52 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccce-eecCccHHHHHHHHHHHcC-CCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 419 PEKLKVAA-IDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 419 ~~~l~~~~-v~~~~Dhr~ama~~laal~-~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
+.+++|+. +++|+||||||+|+++++. .++++|+|++|++||||+||++|.+||++
T Consensus 370 ~~~l~g~~~v~s~~DHRiaMa~aia~l~~~~~v~I~~~~~v~kSfP~F~~~l~~l~~~ 427 (428)
T COG0128 370 GTKLKGAGTVDSYGDHRIAMAFAVAGLLSEGGVRIDDAECVAKSFPGFFEDLASLGAR 427 (428)
T ss_pred CCCCCCCccccCcCcHHHHHHHHHHHhhcCCCEEEcCccceeccCchHHHHHHHhhCC
Confidence 87899985 9999999999999999974 55799999999999999999999999975
No 2
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=2.2e-71 Score=575.86 Aligned_cols=435 Identities=81% Similarity=1.258 Sum_probs=376.1
Q ss_pred cccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcc
Q 011947 23 RSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 102 (474)
Q Consensus 23 ~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~ 102 (474)
+.+.++++|+++.||++++|+|+ +|+|++|+++|+|.+.++|+..++++|++||++++++++..
T Consensus 8 ~~~~~~g~i~~p~sKs~~~r~l~----------------~a~la~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~ 71 (443)
T PLN02338 8 PIKEISGTVKLPGSKSLSNRILL----------------LAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENN 71 (443)
T ss_pred CCCccceEEEcCCcHHHHHHHHH----------------HHHhCCCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCC
Confidence 34567899999999999999998 88899999999999999999999999999999999865445
Q ss_pred eEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCC
Q 011947 103 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG 182 (474)
Q Consensus 103 ~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~ 182 (474)
.++|+|.++.+..+..+.....+++||||+++|+|+++++++.++++++++|+++|.+|||.+|+++|++||++|+..++
T Consensus 72 ~~~i~~~~~~~~~~~~~~~~~~i~~g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~ 151 (443)
T PLN02338 72 RAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLG 151 (443)
T ss_pred eEEEEecCCCcCCcccccccceEEcCCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCC
Confidence 78898876433322100002469999999999999998776444689999999999999999999999999999986544
Q ss_pred CCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
.+++|++|++.+.++++++++++|+|+||++++++||++++++++|++.+...+.||++.++++|++||++|+..++...
T Consensus 152 ~~~~pi~i~g~~~l~~~~~~i~g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~~~~~ 231 (443)
T PLN02338 152 TNCPPVRVNAAGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDR 231 (443)
T ss_pred CCcCCEEEECCCCCCCceEEECCCCchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecCCceE
Confidence 56789999975458888999999999999999999999989999999876656889999999999999999987543235
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCC
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 342 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 342 (474)
++|.+.+.++.+.++.+++|+++++++++++++++|+++|+|+...++|+|..+++.|++||++|+..++.++|.+.+..
T Consensus 232 i~i~~~~~l~~~~~~~i~~D~ssa~~~la~a~~~~g~v~i~~~~~~~~~~d~~~l~~L~~mGa~v~~~~~~i~i~~~~~~ 311 (443)
T PLN02338 232 FFIKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTENSVTVTGPPRD 311 (443)
T ss_pred EEEcCCccccCCCeEEeCCCHHHHHHHHHHHHhcCCeEEECCCCCCCCcchhHHHHHHHHcCCeEEEcCCeEEEcCCccc
Confidence 88876544543457889999999999999888889999999998888888888999999999999998888888765321
Q ss_pred CCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCCc
Q 011947 343 PYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKL 422 (474)
Q Consensus 343 ~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~l 422 (474)
....+.+++++++++++||++|+++++|++++|+++|.|++++|+||||||+.|+++|++||+++++++|+++|+|+..+
T Consensus 312 ~~~~~~l~~~~~d~~~~~d~~~~la~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~~~~d~l~I~g~~~l 391 (443)
T PLN02338 312 AFGGKHLKAIDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPKKL 391 (443)
T ss_pred ccccCCccceEECcccChhHHHHHHHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEEEeCCEEEEECCCCC
Confidence 11112488899999999999999999999999999999999999999999999999999999999999999999986678
Q ss_pred ccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhccc
Q 011947 423 KVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473 (474)
Q Consensus 423 ~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~lg~ 473 (474)
+|+++++++|||++|+|+++|++.++++|+|++||+||||+||++|++|..
T Consensus 392 ~g~~i~~~~DhR~ama~ala~l~~~~~~i~~~~~v~ks~P~f~~~l~~~~~ 442 (443)
T PLN02338 392 KPAEIDTYDDHRMAMAFSLAACGDVPVTINDPGCTRKTFPTYFDVLESIAK 442 (443)
T ss_pred CCCeEECCCcHHHHHHHHHHHHcCCCEEEecCCeeeccCccHHHHHHHHhh
Confidence 999999999999999999999887889999999999999999999999853
No 3
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=1.2e-70 Score=593.65 Aligned_cols=424 Identities=50% Similarity=0.796 Sum_probs=367.8
Q ss_pred hccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCC
Q 011947 21 QLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFA 100 (474)
Q Consensus 21 ~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~ 100 (474)
..+.+.+.++|.+++||++++|+|+ +|+|++|+++|+|.+.++|+..++++|++||++|++++
T Consensus 245 v~~~~~l~G~i~vpgsKS~s~R~l~----------------~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~- 307 (673)
T PRK11861 245 LGPFSHAQGTVRLPGSKSISNRVLL----------------LAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDG- 307 (673)
T ss_pred EcCCCccceEEEcCCcHHHHHHHHH----------------HHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecC-
Confidence 3444667899999999999999998 88899999999999999999999999999999998765
Q ss_pred cceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEee
Q 011947 101 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180 (474)
Q Consensus 101 ~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~ 180 (474)
..++|+|.++.+..+ ...+++||||+++|+|++++++ .++.++++|+++|.+|||.+++++|++||++++..
T Consensus 308 -~~~~I~g~~~~~~~~-----~~~i~~g~sGt~~r~L~~~~a~--~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~ 379 (673)
T PRK11861 308 -GTCVVGGTRGAFTAK-----TADLFLGNAGTAVRPLTAALAV--NGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYE 379 (673)
T ss_pred -CEEEEEcCCCCcCCC-----CceEecCCcchHHHHHHHHHHc--CCCeEEEECChhhccCChhHHHHHHHHCCCcEEeC
Confidence 458888875334332 3468999999999999998776 35788899999999999999999999999999875
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCC---CceEEEEccCCCCchhHHHHHHHHHHcCCEEEEe
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHS 257 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~---g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~ 257 (474)
++.+++|++|.|.+-..+..++|++|+|+||+|++|+++++.. +.++|+..+...+++|+++|+++|++||++|++.
T Consensus 380 ~~~~~~p~~I~g~~~~~~~~~~v~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~~~S~pyv~~t~~~L~~fG~~V~~~ 459 (673)
T PRK11861 380 GNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERD 459 (673)
T ss_pred CCCCCCCEEEECCCcCCCCeEEeCCCccHHHHHHHHHHhHhhccCCCCEEEEECCccCCcCHHHHHHHHHHHCCCEEEEc
Confidence 4456779999986322477899999999999999999987643 5555665443458999999999999999999976
Q ss_pred CceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEe
Q 011947 258 DSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 337 (474)
Q Consensus 258 ~~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~ 337 (474)
+. ..++|.+++.+..+.++.+++|+++++||++++++++|+++|+|+..++.|+|..++++|++||++|+..++.++|.
T Consensus 460 ~~-~~i~V~~~~~~~~~~~~~V~~D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d~~i~~iL~~mGa~i~~~~~~i~i~ 538 (673)
T PRK11861 460 GW-QRFTVPAGVRYRSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIEVR 538 (673)
T ss_pred CC-cEEEEcCCcccCCCceeECCCChHHHHHHHHHHHhcCCeEEECCCCCCCCchHHHHHHHHHHcCCcEEEeCCeEEEe
Confidence 53 36888765445325688899999999999999999999999999999999999889999999999999999988887
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEe
Q 011947 338 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417 (474)
Q Consensus 338 g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~ 417 (474)
+... ..+++++.++|....||++|+|+++|++++|+++|+|++++|+|||||+..++++|++||+++++.+|+++|+
T Consensus 539 ~~~~---~~~~l~~~~iD~~~~pDl~p~laalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~~~d~l~I~ 615 (673)
T PRK11861 539 GIGH---DHGRLAPIDMDFNLIPDAAMTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADYLVVT 615 (673)
T ss_pred eccc---cCCCccceeeccccCchHHHHHHHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEEeCCeEEEE
Confidence 6211 0125888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc-ceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhccc
Q 011947 418 PPEKLKV-AAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473 (474)
Q Consensus 418 g~~~l~~-~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~lg~ 473 (474)
|+..++| +++++|+||||||+|+++++..++++|+|++||+||||+||++|++||.
T Consensus 616 g~~~l~~~~~v~s~~DHRiaM~~av~~l~~~~~~i~~~~~v~kS~P~F~~~~~~l~~ 672 (673)
T PRK11861 616 PPAQLTPNASIDTYDDHRMAMCFSLVSLGGVPVRINDPKCVGKTFPDYFDRFLALAN 672 (673)
T ss_pred CCCCCCCCceEECCCCHHHHHHHHHHHhCCCCEEEecCCeeeccCccHHHHHHHHhc
Confidence 9766776 8899999999999999999987789999999999999999999999985
No 4
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=2.3e-70 Score=589.83 Aligned_cols=416 Identities=52% Similarity=0.829 Sum_probs=368.1
Q ss_pred cccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcceE
Q 011947 25 NQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRA 104 (474)
Q Consensus 25 ~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l 104 (474)
....++|.++.||++++|.|+ +|++++|+++|+|.+.++|+..++++|++||++|++++ ..+
T Consensus 13 ~~l~G~i~~pgsKs~s~R~l~----------------lAaLa~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~~--~~i 74 (661)
T PRK11860 13 LSAGGTVRLPGSKSISNRVLL----------------LAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLG--DTY 74 (661)
T ss_pred CcccEEEEcCCCHHHHHHHHH----------------HHHhCCCCEEEccCCccHHHHHHHHHHHHcCCEEEecC--CEE
Confidence 446889999999999999998 88899999999999999999999999999999998765 468
Q ss_pred EEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCC
Q 011947 105 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTN 184 (474)
Q Consensus 105 ~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~ 184 (474)
+|+|.++.+..+ ...+++||||+++|+|++++++ .++.++++|+.+|.+|||.+|+++|++||++++..++++
T Consensus 75 ~I~g~g~~l~~~-----~~~i~~g~sGtt~r~Ll~~~al--~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~~~~g 147 (661)
T PRK11860 75 RITGLGGQFPVK-----QADLFLGNAGTAMRPLTAALAL--LGGEYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEG 147 (661)
T ss_pred EEECCCCCcCCC-----CceEEeCCchHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEEcCCCC
Confidence 898875434322 3468999999999999987665 367889999999999999999999999999998654456
Q ss_pred CCcEEEecCCCCC-CeeEEEcCCCCHHHHHHHHHHhhcCC-CceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 185 CPPVRINGKGGLP-GGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 185 ~~~i~I~~~~~~~-~~~~~i~gd~Ss~~~sall~aa~l~~-g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
++|++|+++ .+. ++++++++|+||||+|++|+||+++. ++++|++.+...+++|++.|+++|++||++|++.+. ..
T Consensus 148 ~~pi~I~g~-~l~~g~~i~i~gd~SSq~~SalLlAA~~~~g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~~~-~~ 225 (661)
T PRK11860 148 FPPLRIGPA-PLRLDAPIRVRGDVSSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQREGW-QR 225 (661)
T ss_pred cccEEEECC-CcCCCceEEEcCCCcHHHHHHHHHHHHhCCCCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEecCC-cE
Confidence 678999874 676 78999999999999999999998886 568898876556889999999999999999987553 35
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccCC-eEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCC
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 341 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g-~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~ 341 (474)
++|.+.+++..+.++.+++|+++++||++++++++| +++++|+..+++|+|..++++|++||+++++.++.++|.+.+
T Consensus 226 i~v~~~~~l~~~~~~~V~~D~s~a~~l~aaaa~~~G~~v~i~~v~~~~~q~d~~il~~L~kmGa~i~~~~~~i~i~~~~- 304 (661)
T PRK11860 226 FTIPAGSRYRSPGEIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGAQVTSGPNWLEVRRGA- 304 (661)
T ss_pred EEEcCCcccCCCceeEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCCCCccHHHHHHHHHHcCCEEEEeCCEEEEEecC-
Confidence 888765455434578899999999999999999988 999999999999988899999999999999999999998642
Q ss_pred CCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCC
Q 011947 342 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK 421 (474)
Q Consensus 342 ~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~ 421 (474)
..++|.+++++++||++|+++++|++++|+++|+|++++|+||||||.+++++|++||+++++.+|+++|+|+..
T Consensus 305 -----~~l~g~~id~~~~pdi~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~i~~~~d~l~I~g~~~ 379 (661)
T PRK11860 305 -----WPLKAIDLDCNHIPDAAMTLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVEEGADYIRVTPPAQ 379 (661)
T ss_pred -----CCCcceEEcCcCChHHHHHHHHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCEEEEeCCeEEEECCCc
Confidence 258899999999999999999999999999999999999999999999999999999999999999999999533
Q ss_pred ---cccceeecCccHHHHHHHHHHHcC--CCCeEEeCCcccccccccHHHHHHhccc
Q 011947 422 ---LKVAAIDTYDDHRMAMAFSLAACA--DVPVTIKDPSCTRKTFPDYFDVLDSVTK 473 (474)
Q Consensus 422 ---l~~~~v~~~~Dhr~ama~~laal~--~~~i~I~~~~~v~~s~p~f~~~l~~lg~ 473 (474)
++|+++++++|||+||||++||+. +++++|+|++||+||||+||++|++||.
T Consensus 380 ~~~~~g~~v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~ksyP~F~~~l~~Lg~ 436 (661)
T PRK11860 380 AADWKAAAIHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPDYFEALFSVAQ 436 (661)
T ss_pred ccCCCCccccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeecCCCChHHHHHHhcC
Confidence 788899999999999999999985 5679999999999999999999999983
No 5
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=100.00 E-value=2.5e-68 Score=548.76 Aligned_cols=411 Identities=37% Similarity=0.587 Sum_probs=350.1
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEe-CC
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEED-FA 100 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~-~~ 100 (474)
+++..++++|++++||++++|.++ +|+|+.|+++|+|++.++|+..++++|++||++|++. ++
T Consensus 2 ~~~~~l~G~v~~pgsKs~s~rali----------------~AaLa~g~s~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~ 65 (419)
T PF00275_consen 2 EKPSPLSGTVRVPGSKSNSHRALI----------------AAALAEGESRIRNVPDSDDVEATIDALRALGAKISWDEEN 65 (419)
T ss_dssp ESSSEEEEEEE--B-HHHHHHHHH----------------HHHHGBSEEEEES---SHHHHHHHHHHHHTT-EEEEEECT
T ss_pred CCCCceeEEEEeCCccHHHHHHHH----------------HHHHhcCCCeEEECCchHHHHHHHHhhcccCceeEEeecc
Confidence 467788999999999999999999 8999999999999999999999999999999999875 34
Q ss_pred cceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEee
Q 011947 101 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180 (474)
Q Consensus 101 ~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~ 180 (474)
...+++.|.++.+..+ ....+++|+||+++|+|++.++. .+..+.++|+++|++||+.++++.|++||++++..
T Consensus 66 ~~~~~~~g~~~~~~~~----~~~~i~~g~Sgt~lr~L~~~~~~--~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~ 139 (419)
T PF00275_consen 66 GDTVIISGNGGSFSSP----EDIVIDVGNSGTTLRFLLALLAL--APGPVTFTGDCSLGKRPMDPLLDALRQLGARISYL 139 (419)
T ss_dssp SEEEEEETTSTTCEES----HHHHEEECCGHHHHHHHHHHHSE--ESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEE
T ss_pred ceEEEecccccccccc----cccceeeccChhHHhHHHHHHhe--eeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEe
Confidence 4678888854444333 02478999999999999998765 46789999999999999999999999999999987
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhh-cCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCc
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS 259 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~-l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~ 259 (474)
++++++|++|++ ..++.++++++.||||+++++++|+ ++.|+++|.+ ..+.||+++|+++|++||++|++.++
T Consensus 140 ~~~~~~pi~i~~---~~~~~~~i~~~~sSq~vs~lll~A~~~a~g~i~i~~---~~s~p~i~~t~~~L~~~G~~i~~~~~ 213 (419)
T PF00275_consen 140 NGEGFLPIRIRG---LKGGPIEIDGDISSQFVSALLLAAALLARGEITIIN---PASEPYIDMTIDMLKKFGAKIEVDGD 213 (419)
T ss_dssp TTEEEEEECEEE---SSSBEEEEETSSSHHHHHHHHHHHHTTSBSEEEEES---ESSSHHHHHHHHHHHHTT-EEEETTS
T ss_pred cCCceEEEEEee---cccCcEEEeccCCCHHHHHHHHHHHHhcCCceEEeC---CCCCCcHHHHHHHHhhceEEEEEccC
Confidence 655677899987 5678899999999999999888887 4567677764 46889999999999999999999654
Q ss_pred eeEEEEeCCCc-ccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHH-HHHHcCCEEEEecCeEEEe
Q 011947 260 WDRFFIQGGQK-YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAE-VLEKMGAKVTWTENSVTVT 337 (474)
Q Consensus 260 ~~~i~i~~~~~-l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~-~L~~mGa~v~~~~~~i~i~ 337 (474)
.+.++|+|.+. +. +.++.+|+|++.|+||++++++++|+++|+|+..++.|+|..+++ .|++||++|+..++...+.
T Consensus 214 ~~~~~i~g~~~~~~-~~~~~v~~D~s~Aa~~l~aa~l~~g~v~i~~~~~~~~~gd~~~l~~iL~~mG~~i~~~~~~~~~~ 292 (419)
T PF00275_consen 214 ENIISIPGGQYILP-GCEYTVPGDWSSAAFFLAAAALTGGEVTIKNLPPNSLQGDKEFLDDILRRMGAKIEEEDDGVIVV 292 (419)
T ss_dssp TTEEEEETTSSBBB-SEEEE--B-HHHHHHHHHHHHHCTTEEEEESEEGGGGHHHHHHHHHHHHHTTEEEEEESEEEEEE
T ss_pred CcEEEEEecccccc-ceeEEecCCHHHHHHHHHHHheeCcEEEEEecCchhhhhhHHHHHHHHHHhCCCcccCCCeeEEE
Confidence 34799999866 43 458999999999999999999999999999999999998877888 9999999999998665544
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEe
Q 011947 338 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417 (474)
Q Consensus 338 g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~ 417 (474)
+.. .+++.+++..+.||.+|.+++++++++|++++.|+.++|.|||||+..++++|++||+++++.+|+++|+
T Consensus 293 ~~~-------~~~~~~~di~~~pd~~p~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~~~d~l~i~ 365 (419)
T PF00275_consen 293 GGS-------GLRGIEIDISDAPDLAPTLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEEDGDGLIIH 365 (419)
T ss_dssp EET-------TSBEBEEEEEBCSTTCHHHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEEETTEEEEE
T ss_pred ecc-------cccccccccccCccchhHHHHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEEECCEEEEE
Confidence 432 5788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CcccceeecCccHHHHHHHHHHHc-CCC-CeEEeCCcccccccccHHHHH
Q 011947 418 PPE-KLKVAAIDTYDDHRMAMAFSLAAC-ADV-PVTIKDPSCTRKTFPDYFDVL 468 (474)
Q Consensus 418 g~~-~l~~~~v~~~~Dhr~ama~~laal-~~~-~i~I~~~~~v~~s~p~f~~~l 468 (474)
|+. +++|+++++++|||+||+|+++|+ +.+ +++|+|++|++||||+||++|
T Consensus 366 ~~~~~~~g~~v~s~~DhRiaMa~~va~l~~~g~~~~I~~~~~v~ksyP~F~~~L 419 (419)
T PF00275_consen 366 GGRPPLKGAEVDSYNDHRIAMALAVAALAAKGEPITIENAECVSKSYPNFWEDL 419 (419)
T ss_dssp EESE-CBSEEEE-TTSHHHHHHHHHHHHHSBSSEEEEETTHHHHHTSTTHHHHH
T ss_pred CCccCCCCcEEEecHHHHHHHHHHHHhcccCCCeEEEcccceEeccCcChHhhC
Confidence 876 589999999999999999999997 577 899999999999999999986
No 6
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=4.3e-64 Score=517.05 Aligned_cols=407 Identities=45% Similarity=0.673 Sum_probs=355.6
Q ss_pred eEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEe
Q 011947 29 RKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEG 108 (474)
Q Consensus 29 ~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g 108 (474)
++|.++.||++++|+++ +|++++|+++|+|++.++|+..++++|++||++|++++ ..++|+|
T Consensus 1 g~i~~p~sKs~~~r~l~----------------~a~la~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~--~~~~i~g 62 (409)
T TIGR01356 1 GEIRAPGSKSITHRALI----------------LAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDGG--EVAVIEG 62 (409)
T ss_pred CeEECCCCHHHHHHHHH----------------HHHhCCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC--CEEEEEc
Confidence 47899999999999998 88899999999999999999999999999999999764 4789998
Q ss_pred cCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcE
Q 011947 109 CGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPV 188 (474)
Q Consensus 109 ~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i 188 (474)
.+. ..+ ...+++|+||+++|||+++++. .+++++++|+++|.+||+.+++++|+++|++++..++++++|+
T Consensus 63 ~~~--~~~-----~~~i~~g~sgt~~r~l~~l~a~--~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~~p~ 133 (409)
T TIGR01356 63 VGG--KEP-----QAELDLGNSGTTARLLTGVLAL--ADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGSLPL 133 (409)
T ss_pred cCC--CCC-----CCEEEecCchHHHHHHHHHHHc--CCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCcCCE
Confidence 753 222 2378999999999999998776 4688999999999999999999999999999987654456789
Q ss_pred EEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEcc-CCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeC
Q 011947 189 RINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 267 (474)
Q Consensus 189 ~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~-~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~ 267 (474)
+|+++ +.+++++++++.|+||+++++++++ ..+...+...+ ...+++|++.++++|++||++|+..++ ..++|++
T Consensus 134 ~i~~~--~~~~~~~i~~~~S~q~~salllaa~-~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~~~~-~~i~I~g 209 (409)
T TIGR01356 134 TISGP--LPGGIVYISGSASSQYKSALLLAAP-ALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPG 209 (409)
T ss_pred EEecC--CCCCeEEeCCCcchHHHHHHHHhcc-ccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEEcCC-cEEEECC
Confidence 99874 4557889999999999999999886 33333333332 345778999999999999999997653 3688887
Q ss_pred CCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCCC
Q 011947 268 GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK 347 (474)
Q Consensus 268 ~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~ 347 (474)
.+.++ +.++.+++|+++++++++++++++|+++|+|+...+.+.|..+++.|++||++|+..++.++|.+..
T Consensus 210 ~~~l~-~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~~~~~~i~v~~~~------- 281 (409)
T TIGR01356 210 GQKYG-PQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVEGAS------- 281 (409)
T ss_pred CCccC-CCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEEEeCCeEEEEecC-------
Confidence 65565 6678999999999999999999888999999987777777778999999999999988899888642
Q ss_pred CcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCCccccee
Q 011947 348 HLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAI 427 (474)
Q Consensus 348 ~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~l~~~~v 427 (474)
.+++.+++..+.+|.+|.++++|++++|+++|+|+.++|.|||||+..+.++|++||+++++++|+++|+|+++++|.+|
T Consensus 282 ~l~~~~~~~~d~~d~~~~l~~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d~i~i~g~~~l~g~~i 361 (409)
T TIGR01356 282 GLKGIKIDMDDMIDELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDGLYIRGKKELKGAVV 361 (409)
T ss_pred CCccEEEECCCChhHHHHHHHHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCCeEEEECCCCCCCCee
Confidence 58888899888899999999999999999999999999999999999999999999999999999999998767889999
Q ss_pred ecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 428 DTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 428 ~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
++++|||++|+|+++|+ +.++++|+|++|++|+||+||++|++||++
T Consensus 362 ~~~~d~r~am~lav~a~~~~g~~~I~n~~~v~~s~p~f~~~l~~lg~~ 409 (409)
T TIGR01356 362 DTFGDHRIAMAFAVAGLVAEGEVLIDDPECVAKSFPSFFDVLERLGAN 409 (409)
T ss_pred eCCCcHHHHHHHHHHHhcCCCCeEEcCcCeeeccCchHHHHHHHhhCC
Confidence 99999999999999997 467899999999999999999999999985
No 7
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=1.6e-60 Score=490.77 Aligned_cols=405 Identities=42% Similarity=0.653 Sum_probs=350.7
Q ss_pred cceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcceEEE
Q 011947 27 KHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIV 106 (474)
Q Consensus 27 ~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i 106 (474)
++++|+++.||++++|.++ +|++++|+++|+|.+.+||+..++++|++||++|++++ .+++|
T Consensus 1 l~g~i~~~~sKs~~~r~l~----------------~a~l~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~--~~~~i 62 (409)
T cd01556 1 LSGEITVPGSKSISHRALL----------------LAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEG--GTVEI 62 (409)
T ss_pred CcEEEEcCCchHHHHHHHH----------------HHHhcCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC--CEEEE
Confidence 3688999999999999998 78889999999999999999999999999999999875 58999
Q ss_pred EecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCC
Q 011947 107 EGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186 (474)
Q Consensus 107 ~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~ 186 (474)
+|.+.. .... ...++.++||+++||++++++. .++++.++|.+++.+||+..++++|++||++++..++..+.
T Consensus 63 ~g~~~~-~~~~----~~~i~~~~s~~s~~~l~~l~~~--~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~ 135 (409)
T cd01556 63 VGGGGL-GLPP----EAVLDCGNSGTTMRLLTGLLAL--QGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYP 135 (409)
T ss_pred EcCCCC-CCCC----CceEEcCCchHHHHHHHHHHHc--CCCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCC
Confidence 986421 1110 2368899999999999998765 36789999988899999988899999999999875433233
Q ss_pred cEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC-ceeEEEE
Q 011947 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD-SWDRFFI 265 (474)
Q Consensus 187 ~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~-~~~~i~i 265 (474)
|+ +.++ ++++.++++++|+|+|++++++++|++++|+++|++. ...+.|+++.++++|++||++|++++ + .++|
T Consensus 136 ~i-~~~~-~~~~~~~~i~~~~ss~~~~~ll~aa~l~~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~~~--~i~I 210 (409)
T cd01556 136 PL-IGGG-GLKGGEVEIPGAVSSQFKSALLLAAPLAEGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDGYR--TITV 210 (409)
T ss_pred Ce-eecC-CCCCcEEEeCCCCccHHHHHHHHHHhcCCCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecCCc--EEEE
Confidence 44 4443 6778899999999999999999999999999999976 34577889999999999999999876 4 7888
Q ss_pred eCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec-CeEEEeCCCCCCC
Q 011947 266 QGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE-NSVTVTGPPRDPY 344 (474)
Q Consensus 266 ~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~-~~i~i~g~~~~~~ 344 (474)
++.+.++ +.++.+++|++.++++++++++++++++++|+...+ .+..+++.|++||++++..+ +.++|.|..
T Consensus 211 ~~~~~l~-~~~i~i~~d~s~~~~l~~~a~~~~~~v~i~~~~~~~--~~~~~~~~L~~~G~~i~~~~~~~i~i~~~~---- 283 (409)
T cd01556 211 KGGQKYK-GPEYTVEGDASSAAFFLAAAAITGSEIVIKNVGLNS--GDTGIIDVLKEMGADIEIGNEDTVVVESGG---- 283 (409)
T ss_pred CCCCccc-cCeeEeCCcHHHHHHHHHHHHhcCCeEEEcCCCCCC--hHHHHHHHHHHCCCeEEEcCCCeEEEccCC----
Confidence 8755565 668889999999999999998888999999976654 34689999999999999877 788887642
Q ss_pred CCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCC-Ccc
Q 011947 345 GRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE-KLK 423 (474)
Q Consensus 345 ~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~-~l~ 423 (474)
.+++.+++.+++||++|.+++++++++|+++|+|++++|+||||||+.+++.|++||+++++++|+++|+|++ ...
T Consensus 284 ---~~~~~~v~~~~~~d~~~~la~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~~~~~~l~i~g~~~~~~ 360 (409)
T cd01556 284 ---KLKGIDIDGNDIPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGPLKGA 360 (409)
T ss_pred ---CcCceEeccccCchHHHHHHHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEEEECCEEEEECCCCCCC
Confidence 5788889998899999999999999999999999999998999999999999999999999999999999875 455
Q ss_pred cceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhc
Q 011947 424 VAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471 (474)
Q Consensus 424 ~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~l 471 (474)
+.+++.++|||++|+++++++ +.++++|+|++|++|+||+||++|++|
T Consensus 361 ~~~~~~~~d~r~~~~~~~~~~~~~~~~~i~~~~~v~~~~p~f~~~l~~l 409 (409)
T cd01556 361 GVEVYTYGDHRIAMSFAIAGLVAEGGVTIEDPECVAKSFPNFFEDLESL 409 (409)
T ss_pred CceecCCCCHHHHHHHHHHHhcCCCCEEEcccCeEeccCCcHHHHHhhC
Confidence 677888889999999999997 688999999999999999999999976
No 8
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=100.00 E-value=2.5e-59 Score=481.60 Aligned_cols=402 Identities=29% Similarity=0.441 Sum_probs=352.1
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEE
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVE 107 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~ 107 (474)
+++|.++.|+++++|+|+ +|++++|+++|+|.+.++|+..++++|+++|++|++++ ..++|+
T Consensus 2 ~G~v~i~gskS~~~~~L~----------------~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~--~~~~v~ 63 (408)
T cd01554 2 HGIIRVPGDKSISHRSLI----------------FASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD--GVITIQ 63 (408)
T ss_pred ceEEEcCCchHHHHHHHH----------------HHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC--CEEEEE
Confidence 678999999999999988 78899999999999999999999999999999999765 478898
Q ss_pred ecCCC-CCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCC
Q 011947 108 GCGGL-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186 (474)
Q Consensus 108 g~~~~-~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~ 186 (474)
|.+.. +..+ ...+++|+||+++||++++++. .++++.++|.+++..||+..++++|++||+++++.++.+.+
T Consensus 64 g~~~~~~~~~-----~~~~~~g~s~~~~~~l~a~~~~--~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~ 136 (408)
T cd01554 64 GVGMAGLKAP-----QNALNLGNSGTAIRLISGVLAG--ADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLP 136 (408)
T ss_pred ecCCCCCCCC-----CceEEccCccHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcC
Confidence 86531 2222 2368889999999999988764 35789999999999999999999999999999876544456
Q ss_pred cEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEe
Q 011947 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQ 266 (474)
Q Consensus 187 ~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~ 266 (474)
|+.+.+ ++++.+++++++.|+|++++++++|+++.|+++|++. .+++++..++++|++||++|++++. ..++|.
T Consensus 137 ~~~~~~--~~~~~~i~~~~~~s~q~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~i~~~~~-~~i~I~ 210 (408)
T cd01554 137 PLLKGG--KNLGPIHYEDPIASAQVKSALMFAALLAKGETVIIEA---AKEPTINHTENMLQTFGGHISVQGT-KKIVVQ 210 (408)
T ss_pred CEEEec--CCCCCeEEeCCcccHHHHHHHHHHHhcCCCceEEEEe---CCCCCHHHHHHHHHHCCCEEEecCC-cEEEEC
Confidence 777654 4778899999888999999999999999999999975 3556899999999999999987651 278898
Q ss_pred CCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCC
Q 011947 267 GGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 346 (474)
Q Consensus 267 ~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~ 346 (474)
+.+.++ +.++.+++|++.++++++++++++++++|+|++..+ ++..+++.|++||++++..++.+++.+.
T Consensus 211 g~~~~~-~~~~~i~~D~~~a~~~l~~~~l~~~~v~i~~~~~~~--~~~~~~~~L~~~G~~v~~~~~~i~v~~~------- 280 (408)
T cd01554 211 GPQKLT-GQKYVVPGDISSAAFFLVAAAIAPGRLVLQNVGINE--TRTGIIDVLRAMGAKIEIGEDTISVESS------- 280 (408)
T ss_pred CCcccc-cceEEeCCChhHHHHHHHHHhhcCCeEEEecCCCCc--hhhHHHHHHHHcCCEEEEeCCeEEEecC-------
Confidence 765565 457788999999999999999888999999987655 4568999999999999998888888754
Q ss_pred CCcceEEEcCCC---CCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCCcc
Q 011947 347 KHLRAVDVNMNK---MPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLK 423 (474)
Q Consensus 347 ~~l~g~~i~~~~---~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~l~ 423 (474)
.++|.+++..+ .+|++|.++++|++++|+++|.|+.++|.|||||+..+.++|++||++++.++|.++|+|++.++
T Consensus 281 -~~~~~~i~~~~~~~~~d~~p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~~~~~~l~i~g~~~l~ 359 (408)
T cd01554 281 -DLKATEICGALIPRLIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTADGMIIKGKEKLH 359 (408)
T ss_pred -CceeEEeccccCCCCchHHHHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEEEECCEEEEECCCCCC
Confidence 58899998876 67899999999999999999999999999999999999999999999999999999999987788
Q ss_pred cceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhc
Q 011947 424 VAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471 (474)
Q Consensus 424 ~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~l 471 (474)
|.++++++|||++|+|+++|+ ++++++|+|++|++|+||+||+.|++|
T Consensus 360 g~~v~~~~D~r~~ma~~i~al~~~~~~~i~~~~~v~~s~p~f~~~l~~l 408 (408)
T cd01554 360 GARVNTFGDHRIGMMTALAALVADGEVELDRAEAINTSYPSFFDDLESL 408 (408)
T ss_pred CCEEecCCCHHHHHHHHHHHhcCCCCEEEecccceeccCccHHHHHhhC
Confidence 999999999999999999998 588999999999999999999999976
No 9
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=6.4e-58 Score=474.99 Aligned_cols=411 Identities=40% Similarity=0.635 Sum_probs=349.5
Q ss_pred cccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcc
Q 011947 23 RSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 102 (474)
Q Consensus 23 ~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~ 102 (474)
.++.++++|+++.||++++|.|+ +|+|++|+++|.|.+.+||+..++++|++||++|++ .
T Consensus 9 ~~~~l~g~i~~p~sks~~~r~l~----------------~a~La~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~----~ 68 (435)
T PRK02427 9 PPSPLSGTVRVPGSKSISHRALL----------------LAALAEGETTITNLLRSEDTLATLNALRALGVEIED----D 68 (435)
T ss_pred CCCCccEEEEcCCChHHHHHHHH----------------HHHhcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc----c
Confidence 34467999999999999999988 888999999999999999999999999999999986 2
Q ss_pred eEEEEecCCC-CCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeC
Q 011947 103 RAIVEGCGGL-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 181 (474)
Q Consensus 103 ~l~i~g~~~~-~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~ 181 (474)
.++|+|.+.. +..+ ...+++|+||+++|||+++++. .++++.++|.+++.+||+..++++|++||++++..
T Consensus 69 ~~~i~~~~~~~~~~~-----~~~i~~~~sg~~~r~l~~laa~--~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~~- 140 (435)
T PRK02427 69 EVVVEGVGGGGLKEP-----EDVLDCGNSGTTMRLLTGLLAL--QPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEGR- 140 (435)
T ss_pred eEEEEccCCCCCCCC-----CCEEEccCchHHHHHHHHHHHh--CCCeEEEECChhhccCChHHHHHHHHHCCCEEEeC-
Confidence 5788876422 2222 2468999999999999987665 35689999999999999999999999999999862
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCC-CceEEEEccCCCCchhHHHHHHHHHHcCCEEE-EeC-
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVE-HSD- 258 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~-g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~-~~~- 258 (474)
++++.|++|++. .....++++++.|+|+++++++++++.. |+++++..+...+.|++..++++|++||++++ ..+
T Consensus 141 ~~~~~~i~i~g~--~~~~~~~i~~~~ss~~~~~lll~aa~~~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~ 218 (435)
T PRK02427 141 DEGYLPLTIRGG--KKGGPIEYDGPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGW 218 (435)
T ss_pred CCCCCCEEEecC--CcCccEEecCCcCCHHHHHHHHHHhhccCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCC
Confidence 234568999874 2456788898999999999888777755 88777776556688899999999999999998 443
Q ss_pred ceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCC-eEEEeccCCCCccchhHHHHHHHHcCCEEEEecC-----
Q 011947 259 SWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTEN----- 332 (474)
Q Consensus 259 ~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g-~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~----- 332 (474)
+...++|.+.+.++ +.++.+++|++++++++++++++++ ++++.|+...+.+.+..+++.|++||++|+..++
T Consensus 219 ~~~~i~I~g~~~l~-~~~~~i~~D~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~~~~l~~L~~~G~~v~~~~~~~~~~ 297 (435)
T PRK02427 219 GYRRIVIKGGQRLR-GQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIEIENEREGGE 297 (435)
T ss_pred cccEEEECCCcccc-cceEEeCCCHHHHHHHHHHHHhCCCCeEEEeCCCCCCCcchHHHHHHHHHcCCceEeccccccCC
Confidence 22378888765565 6688899999999999999988888 8999998666666666799999999999986553
Q ss_pred ---eEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEE
Q 011947 333 ---SVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEE 409 (474)
Q Consensus 333 ---~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~ 409 (474)
.++|.+. ++++.+++..+.+|.++.++++|++++|+++|.|+.++|.||+||+..+.+.|++||+++++
T Consensus 298 ~~~~i~i~~~--------~l~~~~~~~~d~~d~~~~l~~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~~ 369 (435)
T PRK02427 298 PVGDIRVRSS--------ELKGIDIDIPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEE 369 (435)
T ss_pred ccCcEEEecC--------CcccEEeecCCCchHHHHHHHHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEEE
Confidence 3777632 68888888888889999999999999999999999999989999999999999999999999
Q ss_pred eCCEEEEeCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 410 GPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 410 ~~d~l~I~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
++|+++|+|.+ +++. +++++|||++|+++++|+ +.++++|+|++|++|+||+||++|++||++
T Consensus 370 ~~~~i~i~g~~-~~~~-v~~~~d~r~a~~l~~~a~~a~g~~~i~~~~~v~~~~p~f~~~l~~lg~~ 433 (435)
T PRK02427 370 TEDGLIITGGP-LAGV-VDSYGDHRIAMAFAIAGLAAEGPVTIDDPECVAKSFPDFFEDLASLGAN 433 (435)
T ss_pred eCCeEEEECCC-CCCC-ccCCCcHHHHHHHHHHHHcCCCCEEEeccCeeeccCCCHHHHHHHHhcc
Confidence 99999999865 4777 999999999999999987 567899999999999999999999999985
No 10
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=5e-57 Score=496.11 Aligned_cols=408 Identities=27% Similarity=0.441 Sum_probs=347.8
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 101 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~ 101 (474)
.++..+.++|.++.||++++|.|+ +|++++++++|+|.+.++|+..++++|++||++|++.++
T Consensus 307 ~~~~~~~G~i~ipgskS~~~r~L~----------------~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~- 369 (735)
T PRK14806 307 LPGGAVKGTIRVPGDKSISHRSIM----------------LGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHN- 369 (735)
T ss_pred ccCCcccEEEEcCCChhHHHHHHH----------------HHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCC-
Confidence 344567889999999999999988 788999999999999999999999999999999986433
Q ss_pred ceEEEEecCC-CCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEee
Q 011947 102 KRAIVEGCGG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180 (474)
Q Consensus 102 ~~l~i~g~~~-~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~ 180 (474)
..++|+|.+. .+..+ ...+++++||+++||+.++++. .+..+.++|.+++..||+.+++++|++||++++..
T Consensus 370 ~~~~i~g~~~~~~~~~-----~~~i~~~~s~ts~~ll~a~la~--~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~ 442 (735)
T PRK14806 370 GRVTIHGVGLHGLKAP-----PGPLYMGNSGTSMRLLSGLLAA--QSFDSVLTGDASLSKRPMERVAKPLREMGAVIETG 442 (735)
T ss_pred CEEEEEcCCCCCCCCC-----CceeeccCchHHHHHHHHHHhc--CCCeEEEECChhhhhCChHHHHHHHHHCCCEEEcC
Confidence 4688887531 23322 2368899999999999988764 46689999999999999999999999999999853
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCce
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW 260 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~ 260 (474)
+++++|++|+++.++++.++++++ .|+|++++++++|+++.|+++|.+.. .+...++++|++||++|+..++
T Consensus 443 -~~g~~pi~i~g~~~l~g~~~~l~~-~ssq~~s~ll~aA~~~~g~~~i~~~~-----~~~~~t~~~L~~~G~~i~~~~~- 514 (735)
T PRK14806 443 -EEGRPPLSIRGGQRLKGIHYDLPM-ASAQVKSCLLLAGLYAEGETSVTEPA-----PTRDHTERMLRGFGYPVKVEGN- 514 (735)
T ss_pred -CCCcCCEEEECCCCccceEEeccC-chHHHHHHHHHHHhccCCceEEecCc-----CCHHHHHHHHHHCCCEEEecCC-
Confidence 346778999874358899999996 59999999999999999999987432 2334588999999999998765
Q ss_pred eEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCC-eEEEeccCCCCccchhHHHHHHHHcCCEEEEecCe------
Q 011947 261 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS------ 333 (474)
Q Consensus 261 ~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g-~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~------ 333 (474)
.+.|.+.+.++ +.++.+++|++.+++|++++++++| ++++.|+... +.+..+++.|++||++++..++.
T Consensus 515 -~i~I~g~~~~~-~~~~~i~~D~~~a~~~~~~a~~~~g~~v~i~~~~~~--~~~~~~~~~L~~mGa~i~~~~~~~~~g~~ 590 (735)
T PRK14806 515 -TISVEGGGKLT-ATDIEVPADISSAAFFLVAASIAEGSELTLEHVGIN--PTRTGVIDILKLMGADITLENEREVGGEP 590 (735)
T ss_pred -EEEECCCcccc-CCeEEeCCCHHHHHHHHHHHHhCCCCEEEEccCCCC--cchHHHHHHHHHcCCEEEEcCcccccCCc
Confidence 78888765565 6688999999999999999988754 7999997643 33367999999999999998763
Q ss_pred ---EEEeCCCCCCCCCCCcceEEEcCCCCC---cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEE
Q 011947 334 ---VTVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATV 407 (474)
Q Consensus 334 ---i~i~g~~~~~~~~~~l~g~~i~~~~~~---r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i 407 (474)
+.+.+. +++|+++++.+.| |++|+++++|++++|+++|+|++++|+|||||+..+.++|++||+++
T Consensus 591 ~~~i~v~~~--------~l~~~~i~~~~~p~~~D~~p~la~~a~~a~G~s~i~~~~~lr~~EsdR~~~~~~~L~~lG~~i 662 (735)
T PRK14806 591 VADIRVRGA--------RLKGIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDC 662 (735)
T ss_pred ceeEEEecC--------CcccEEechHhCcchhhHHHHHHHHHHhCCCcEEEEChHHhccchhHHHHHHHHHHHHcCCEE
Confidence 344432 6899999988888 88899999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEeCCCCcccceeecCccHHHHHHHHHHHcC-CCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 408 EEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 408 ~~~~d~l~I~g~~~l~~~~v~~~~Dhr~ama~~laal~-~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
++++|+++|+|+ +++++++.+++|||++|+|+++|+. .++++|+|++||+|+||+||+.|++||++
T Consensus 663 ~~~~~~l~i~g~-~~~~~~v~~~~DhR~~ma~~~~~l~~~~~~~I~~~~~v~ks~p~f~~~l~~lg~~ 729 (735)
T PRK14806 663 EPTPDGIIIEGG-IFGGGEVESHGDHRIAMSFSVASLRASGPITIHDCANVATSFPNFLELANQVGIR 729 (735)
T ss_pred EEeCCeEEEECC-CCCCceeeCCCCHHHHHHHHHHHhcCCCCEEEcccchhhccCcHHHHHHHHhcCe
Confidence 999999999997 5778889999999999999999984 67899999999999999999999999984
No 11
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=100.00 E-value=2.4e-52 Score=428.65 Aligned_cols=392 Identities=23% Similarity=0.305 Sum_probs=323.1
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEE
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVE 107 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~ 107 (474)
.++|.++.||++++|+|+ +|++++|+++|+|.+...|+..++++|++||++|++.+ ..+++|+
T Consensus 2 ~g~i~~p~sKS~~~r~l~----------------~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~~I~ 64 (400)
T cd01555 2 SGEVRISGAKNAALPILA----------------AALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEG-ENTLVID 64 (400)
T ss_pred ceEEEcCCcHHHHHHHHH----------------HHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECC-CCEEEEE
Confidence 678999999999999998 88899999999999999999999999999999998765 3589998
Q ss_pred ecCCC-CCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCC
Q 011947 108 GCGGL-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186 (474)
Q Consensus 108 g~~~~-~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~ 186 (474)
|.+.. +..+ .. .+++++++++++.+++.. ..+..+.++|++++.+||+..++++|++||++++..+ ++
T Consensus 65 ~~~~~~~~~~------~~-~~~~~~t~~~~~~~l~~~-~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~--~~- 133 (400)
T cd01555 65 ASNINSTEAP------YE-LVRKMRASILVLGPLLAR-FGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIED--GY- 133 (400)
T ss_pred CCCCCCCcCC------HH-HHhhhhhHHHHHHHHhcC-CCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeC--CE-
Confidence 75422 2121 11 135667787666665432 2346788889989999999888999999999998753 23
Q ss_pred cEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEe
Q 011947 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQ 266 (474)
Q Consensus 187 ~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~ 266 (474)
+.|.+++++++.++.++. .|+++++.+++++++++++++|.+. .+++++..++++|++||++|+..+. ..+.|.
T Consensus 134 -~~v~~~~~~~~~~~~i~~-~~~~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~i~I~ 207 (400)
T cd01555 134 -VEAKAAGRLKGARIYLDF-PSVGATENIMMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKIEGAGT-DTIRIE 207 (400)
T ss_pred -EEEecCCCccceEEECCC-CCHHHHHHHHHHHHhCCCeEEEecc---cCCccHHHHHHHHHHCCCEEEEcCC-ceEEEe
Confidence 444433357788899886 4778888999988888999988754 3566788899999999999987432 378898
Q ss_pred CCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCC
Q 011947 267 GGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 346 (474)
Q Consensus 267 ~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~ 346 (474)
+.+.++ +.++.+++|++.++++++++++++++++|+|+...+++ .+++.|++||++|+..++.+++.+..
T Consensus 208 g~~~l~-~~~~~~~~D~~~a~~~l~aa~~~~g~~~i~~~~~~~~~---~~~~~L~~~G~~i~~~~~~i~i~~~~------ 277 (400)
T cd01555 208 GVERLH-GAEHTVIPDRIEAGTFLVAAAITGGDITVENVIPEHLE---AVLAKLREMGAKIEIGEDGIRVDGDG------ 277 (400)
T ss_pred CCCCCC-CcEEEecCCHHHHHHHHHHHHHhCCcEEEeCCChhHHH---HHHHHHHHCCCEEEEcCCEEEEEcCC------
Confidence 765565 56788899999888999998888999999998766665 89999999999999989999988642
Q ss_pred CCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEec-ccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCC
Q 011947 347 KHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK 421 (474)
Q Consensus 347 ~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~~-~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~ 421 (474)
.++++.++++.+.| |+.|.++++|++++|+++|.+ +.+ +|+ .+.++|++||++++.++|+++|+|..+
T Consensus 278 ~~l~~~~i~~~~~p~~~~D~~~~l~~~a~~~~g~~~~~~~~~~------~r~-~~~~~L~~lGa~i~~~~~~l~i~g~~~ 350 (400)
T cd01555 278 GRLKAVDIETAPYPGFPTDLQAQFMALLTQAEGTSVITETIFE------NRF-MHVDELNRMGADIKVEGNTAIIRGVTK 350 (400)
T ss_pred CCceeeeeecCcCCCCHHHHHHHHHHHHHhCCCeEEEEeeehh------hhh-HHHHHHHHcCCeEEEECCEEEEECCCc
Confidence 15888899988888 999999999999999999987 332 566 489999999999999999999998666
Q ss_pred cccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhc
Q 011947 422 LKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471 (474)
Q Consensus 422 l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~l 471 (474)
+++.+|+++ |||++|+++++|+ +.+.++|+|++|++||||+||++|++|
T Consensus 351 l~~~~v~~~-D~r~ama~a~~a~~~~g~~~i~~~~~v~ksyp~f~~~l~~l 400 (400)
T cd01555 351 LSGAPVMAT-DLRAGAALVLAGLAAEGETIISNIYHIDRGYERIEEKLRAL 400 (400)
T ss_pred ccCceEecC-chHHHHHHHHHHHcCCCcEEEcChhheeCChhhHHHHHhcC
Confidence 888899997 9999999999987 577899999999999999999999986
No 12
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-52 Score=401.09 Aligned_cols=401 Identities=23% Similarity=0.307 Sum_probs=346.9
Q ss_pred hccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCC
Q 011947 21 QLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFA 100 (474)
Q Consensus 21 ~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~ 100 (474)
.....+++++|.+..+|+.++.++. ++.|++++++|+|+|.-.|+..+++.|+.||+++++++
T Consensus 6 I~Gg~~L~G~V~IsGAKNaalpii~----------------AtlLa~~~v~L~NvP~l~DV~~~~~ll~~lG~~v~~~~- 68 (421)
T COG0766 6 IEGGNPLNGEVTISGAKNAALPLLA----------------ATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERDG- 68 (421)
T ss_pred EeCCCccceEEEEeccHhHHHHHHH----------------HHHhCCCcEEEeCCCChHHHHHHHHHHHHcCCEEEEcc-
Confidence 3566778999999999997777776 78899999999999999999999999999999999986
Q ss_pred cceEEEEecCCCCCccccCCCcceEEecCchhhhH---HHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEE
Q 011947 101 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADV 177 (474)
Q Consensus 101 ~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r---~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v 177 (474)
...+.++.+.. .....|+ ++. ..+| ++++.++++.+..++.++|+|.+++||++.|++.|+++|+++
T Consensus 69 ~~~~~i~~~~i--~~~~apy---~~v-----~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i 138 (421)
T COG0766 69 DGELEIDAPNI--NSTEAPY---ELV-----RKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEI 138 (421)
T ss_pred CceEEEccccc--ccccCCH---HHH-----HHHHhHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEE
Confidence 35788876531 1111111 111 1233 677877887778999999999999999999999999999999
Q ss_pred EeeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEe
Q 011947 178 DCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHS 257 (474)
Q Consensus 178 ~~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~ 257 (474)
+.++ |+ +..+.++.+++.++.++ -.|...+-.++|||.++.|.+.|+|. ..+|++..+.++|++||++|+..
T Consensus 139 ~~e~--g~--i~a~a~~~L~G~~I~ld-~~SVGATenimmAA~lA~G~TvIeNA---A~EPEIvDLa~~Ln~MGA~I~Ga 210 (421)
T COG0766 139 EIEH--GY--IEASAPKGLKGAHIYLD-KVSVGATENIMMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKIEGA 210 (421)
T ss_pred EEcC--CE--EEEEccCCccceEEEec-CCcccHHHHHHHHHHhcCCcEEEeec---ccCchHHHHHHHHHHcCCeeEEc
Confidence 8753 43 66666545899999998 46877777999999999999999864 57899999999999999999988
Q ss_pred CceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEe
Q 011947 258 DSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 337 (474)
Q Consensus 258 ~~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~ 337 (474)
+. ++++|.|.++++ +.++.+.||..++.+|++++++++|+++++|+.+.+++ .++..|++||+++++.++++++.
T Consensus 211 GT-~~I~I~GV~~L~-g~~h~VipDRIEAGT~~~aaA~tgg~v~i~~v~~~hl~---~~~~kL~e~G~~~~~~~~~i~v~ 285 (421)
T COG0766 211 GT-STITIEGVEKLH-GAEHSVIPDRIEAGTFLVAAAITGGDVTIENVRPEHLE---AVLAKLREAGVDIEEGEDGIRVD 285 (421)
T ss_pred CC-CeEEEecccccc-ceeeEecCchhhHHHHHHHHHHhCCcEEEeCCCHHHHH---HHHHHHHHhCCeEEEcCCeEEEe
Confidence 76 689999998887 78999999999999999999999999999999888777 99999999999999999999998
Q ss_pred CCCCCCCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCE
Q 011947 338 GPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDY 413 (474)
Q Consensus 338 g~~~~~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~ 413 (474)
... .+++++++.+...| |++..++++.+.++|.+.|.+- +.| +|| .++++|++||+++++++++
T Consensus 286 ~~~------~~~k~v~i~T~p~PGFpTDmQaqf~~L~~~a~G~s~I~Et----ifE-nRf-~hv~EL~RmGA~i~~~g~~ 353 (421)
T COG0766 286 MEG------KRLKAVDIKTLPYPGFPTDMQAQFMALLTVAEGTSVITET----IFE-NRF-MHVPELIRMGANIKLEGNT 353 (421)
T ss_pred ccC------CCCCcceeccCCCCCCchhHHHHHHHHHhhcCCceEEEEe----ech-hhh-hhHHHHHhCCCceEEECCE
Confidence 753 25899999887766 9999999999999999999872 233 578 7899999999999999999
Q ss_pred EEEeCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 414 CVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 414 l~I~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
.+|+|+.+|+|+++.+ .|.|.+||+.+||| +.|.++|+|.++++++|++|.++|++|||+
T Consensus 354 a~i~G~~~L~ga~V~a-tDLRAsaaLVlAgLvAeG~T~I~~v~hldRGYe~~~~KL~~lGA~ 414 (421)
T COG0766 354 AVIQGVEQLSGAPVMA-TDLRASAALVLAGLVAEGETIVNRVYHLDRGYERLEEKLRALGAK 414 (421)
T ss_pred EEEECCccccCCeeec-chhhhHHHHHHHHHhhCCeEEEeeEEEeecChhHHHHHHHHcCCc
Confidence 9999999999999998 79999999999998 688999999999999999999999999986
No 13
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=1.5e-51 Score=424.62 Aligned_cols=401 Identities=22% Similarity=0.295 Sum_probs=331.1
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 101 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~ 101 (474)
++.+...++|.++.||++++|+|+ +|++++|+++|+|.+.++|+..++++|++||++|++.++
T Consensus 7 ~~~~~~~G~i~~pgsKS~~~r~l~----------------~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~- 69 (417)
T PRK09369 7 EGGKPLSGEVTISGAKNAALPILA----------------ASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGN- 69 (417)
T ss_pred eCCCCceEEEEccCcHHHHHHHHH----------------HHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCC-
Confidence 344567899999999999999998 888999999999999999999999999999999987643
Q ss_pred ceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeC
Q 011947 102 KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 181 (474)
Q Consensus 102 ~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~ 181 (474)
..++|+|.+. +..+ . ...+ ...|+++++|+.+++.. ..+..+.++|++++.+||+..++++|++||++++..+
T Consensus 70 ~~~~i~g~~~-~~~~-~---~~~~-~~~s~~s~~~l~~~~~~-~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~ 142 (417)
T PRK09369 70 GTVTIDASNI-NNTE-A---PYEL-VKKMRASILVLGPLLAR-FGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEH 142 (417)
T ss_pred CEEEEECCCC-CCCc-C---CHHH-HhhhhhHHHHHHHHhcc-CCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEEC
Confidence 4788887642 1111 0 1122 45677777777776543 2345899999999999999999999999999998653
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 261 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~ 261 (474)
++.++++. +++++.+++++. .|+|+++.+++++++++++++|.+. .++++++.++++|++||++|++.+. .
T Consensus 143 --~~~~v~~~--g~l~~~~~~l~~-~ss~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~ 213 (417)
T PRK09369 143 --GYVEAKAD--GRLKGAHIVLDF-PSVGATENILMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKISGAGT-D 213 (417)
T ss_pred --CEEEEEec--CCcccceEeCCC-CCHHHHHHHHHHHHhCCCcEEEeCC---CcCCcHHHHHHHHHHCCCEEEEcCC-c
Confidence 34344442 357788899986 5889888999988888999998753 3567899999999999999986442 3
Q ss_pred EEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCC
Q 011947 262 RFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 341 (474)
Q Consensus 262 ~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~ 341 (474)
.+.|++.+.++ +.++.+++|++.++++++++++++++++|.|+...+++ .+++.|++||++|+.+++.+++.+..
T Consensus 214 ~i~I~g~~~~~-~~~~~v~~D~s~as~ll~aa~l~~g~v~i~~~~~~~~~---~~~~~L~~~G~~v~~~~~~i~v~~~~- 288 (417)
T PRK09369 214 TITIEGVERLH-GAEHTVIPDRIEAGTFLVAAAITGGDVTIRGARPEHLE---AVLAKLREAGAEIEEGEDGIRVDMPG- 288 (417)
T ss_pred eEEEcCCCccC-CceEEecCCHHHHHHHHHHHHHcCCceEEecCChhHHH---HHHHHHHHcCCEEEEcCCEEEEeeCC-
Confidence 78898865565 56788999999999999988888889999987655554 78999999999999888888887642
Q ss_pred CCCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEec-ccccccccchhHHHHHHHHHHcCCEEEEeCCEEEE
Q 011947 342 DPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCVI 416 (474)
Q Consensus 342 ~~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~~-~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I 416 (474)
.++|.+++..+.| |+.|.++++|++++|+++|.+ +.+ +|+ .+.++|++||++++.++|+++|
T Consensus 289 ------~l~~~~i~~~~~p~v~~D~~~~l~~~aa~a~g~~~i~~~~~~------~r~-~~~~~L~~mG~~i~~~~~~l~i 355 (417)
T PRK09369 289 ------RLKAVDIKTAPYPGFPTDMQAQFMALLTQAEGTSVITETIFE------NRF-MHVPELIRMGADIEVDGHTAVV 355 (417)
T ss_pred ------CccceEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc------cHH-HHHHHHHHCCCeEEEECCEEEE
Confidence 5888999988888 899999999999999999986 443 355 5899999999999999999999
Q ss_pred eCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 417 TPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 417 ~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
+|+..++|.++++ +|||++|+|+++|+ +.++++|+|++|++|+||+||+.|++||++
T Consensus 356 ~g~~~l~g~~i~~-~D~r~am~~a~~a~~a~g~~~I~~~~~v~rs~~~~~~~l~~lG~~ 413 (417)
T PRK09369 356 RGVEKLSGAPVMA-TDLRASASLVLAGLVAEGTTIVDRIYHLDRGYERIEEKLRALGAD 413 (417)
T ss_pred ECCCCccccEEec-CcHHHHHHHHHHHHcCCCcEEECChhHHhCCHHHHHHHHHhCCCE
Confidence 9866688888887 89999999999986 578899999999999999999999999974
No 14
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=100.00 E-value=1.4e-49 Score=410.18 Aligned_cols=399 Identities=22% Similarity=0.273 Sum_probs=323.2
Q ss_pred ccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcce
Q 011947 24 SNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKR 103 (474)
Q Consensus 24 ~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~ 103 (474)
.+...++|.++.|||++.|+++ +|++++|+++|+|.+.+.|+..++++|++||++|++.+ ..
T Consensus 9 ~~~~~g~i~~p~skS~~~r~l~----------------~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~--~~ 70 (416)
T TIGR01072 9 GKPLSGEVTISGAKNAALPIIA----------------ATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN--NT 70 (416)
T ss_pred CCCcEEEEEcCCcHHHHHHHHH----------------HHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC--CE
Confidence 3556889999999999999888 78899999999999999999999999999999999865 46
Q ss_pred EEEEecCC-CCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCC
Q 011947 104 AIVEGCGG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG 182 (474)
Q Consensus 104 l~i~g~~~-~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~ 182 (474)
++|+|.+. .+..+ ....+. ..++++++.+++. .+....+.++|++++.+||+..++++|++||++++..+
T Consensus 71 ~~i~g~~~~~~~~~-----~~~s~~--~ra~~~~~~~~la-~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~- 141 (416)
T TIGR01072 71 LEINTPNINSTEAP-----YELVRK--MRASILVLGPLLA-RFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIED- 141 (416)
T ss_pred EEEECCCCCCCCCC-----HHHHhh--hhHHHHHHHHHhc-cCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEEC-
Confidence 89988642 12221 001111 1123334444432 22245788999889999999999999999999998753
Q ss_pred CCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
++.++ .+.+++++.++++++ .|+|+++++++|+++++++++|.+. .+.++++.++++|++||++++..++ ..
T Consensus 142 -~~~~v--~~~~~l~~~~~~l~~-~~s~~~~~ll~aa~~~~~~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~ 213 (416)
T TIGR01072 142 -GYVYA--SAKGRLVGAHIVLDK-VSVGATENIIMAAVLAEGTTVIENA---AREPEIVDLCEFLNKMGAKITGAGS-NT 213 (416)
T ss_pred -CEEEE--EecCcceeeEEecCC-CCHHHHHHHHHHHHhCCCcEEEecC---CcCcCHHHHHHHHHHCCCEEEEcCC-CE
Confidence 33344 443357788899986 6889999999999889999988753 3567888999999999999985332 37
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCC
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 342 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 342 (474)
+.|.+.+.++ +.++.+++|++.++++++++++++++++|.|+...+++ .+++.|++||++|+..++.+.+.+.+
T Consensus 214 l~I~g~~~~~-~~~~~v~~D~~~a~~~l~a~~l~~g~~~i~~~~~~~~~---~~~~~L~~~G~~v~~~~~~i~v~~~~-- 287 (416)
T TIGR01072 214 ITIEGVEKLH-GTEHSVIPDRIEAGTFLVAAAITGGEITIKNVRPDHLR---AVLAKLREIGAEVEVDENGIRVDMRQ-- 287 (416)
T ss_pred EEEeCCCccc-CcEEEEcCCHHHHHHHHHHHHHcCCeEEEEecCchHHH---HHHHHHHHCCCEEEEcCCEEEEEecC--
Confidence 8898765565 56788899999888888888888899999998766665 79999999999999988898887541
Q ss_pred CCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeC
Q 011947 343 PYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITP 418 (474)
Q Consensus 343 ~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g 418 (474)
+++++.++++.+.| |+.|+++++|++++|+++|.|.. + +||+ .+.+.|++||++++.++|.++|+|
T Consensus 288 ----~~l~~~~i~~~~~p~v~~D~~~~l~~la~~a~g~~~i~~~~----~-~~r~-~~~~~L~~~Ga~i~~~~~~l~i~g 357 (416)
T TIGR01072 288 ----KRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITETV----F-ENRF-MHVDELIRMGANIKLEGNTAVIHG 357 (416)
T ss_pred ----CCcceeEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEeee----c-ccHH-HHHHHHHHCCCeEEEECCEEEEEC
Confidence 15889999988888 99999999999999999999832 2 3676 489999999999999999999998
Q ss_pred CCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 419 PEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 419 ~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
++.++|.++++ +|||++|+++++|+ +.++++|+|++|++|+||+||+.|++||++
T Consensus 358 ~~~l~g~~~~~-~D~r~am~~a~aa~~~~g~~~I~~~~~~~rs~~~~~~~L~~lG~~ 413 (416)
T TIGR01072 358 VEQLSGAEVMA-TDLRAGAALVLAGLVAEGETIVHNVYHLDRGYEDLEEKLRALGAK 413 (416)
T ss_pred CCCCcCCeecC-CCHHHHHHHHHHHHcCCCcEEECCHhHhhCCHhHHHHHHHhccCE
Confidence 76788888987 89999999999987 578899999999999999999999999974
No 15
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=1.3e-49 Score=410.41 Aligned_cols=398 Identities=23% Similarity=0.297 Sum_probs=318.6
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 101 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~ 101 (474)
.+.+.+.++|+++.||+++.|+|+ +|++++|+++|+|.+.+.|++.++++|++||++|+..+
T Consensus 7 ~~~~~~~G~v~vpgsKSs~~~ll~----------------aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~~-- 68 (417)
T PRK12830 7 NGGKPLSGEVTISGAKNSAVALIP----------------AAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRDG-- 68 (417)
T ss_pred eCCCcceEEEEccCcHHHHHHHHH----------------HHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEcC--
Confidence 344567899999999998888887 77799999999999999999999999999999998743
Q ss_pred ceEEEEecCC-CCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEee
Q 011947 102 KRAIVEGCGG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180 (474)
Q Consensus 102 ~~l~i~g~~~-~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~ 180 (474)
..++|+|.+. ....+ ..+....+.+++|+.+ +++..++..+.++|++++.+||+..++++|++||++++..
T Consensus 69 ~~~~I~g~~~~~~~~~-------~~~~~~~~as~~~~~~-~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~ 140 (417)
T PRK12830 69 DTLEIDPTGIQSMPLP-------NGKVKSLRASYYFMGA-LLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNE 140 (417)
T ss_pred CEEEEECCCCCCCCCC-------HHHHhhchhHHHHHHH-HhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEc
Confidence 5788988531 11111 0011112333445543 3332123379999999999999999999999999999864
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCce
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW 260 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~ 260 (474)
+ + ++.|.+. .+++.+++++. .|+++++.++++++++.++++|.+. .+++++..++++|++||++++..+.
T Consensus 141 ~--~--~i~v~~~-~l~~~~~~ld~-~ss~~~~~ll~a~~~~~g~~~i~~~---~~~~~i~~l~~~L~~~G~~i~~~~~- 210 (417)
T PRK12830 141 G--G--AIYLKAD-ELKGAHIYLDV-VSVGATINIMLAAVKAKGRTVIENA---AKEPEIIDVATLLNNMGANIKGAGT- 210 (417)
T ss_pred C--C--EEEEEeC-CccCCEEECCC-CCHHHHHHHHHHHHcCCCeEEEccC---CcCCcHHHHHHHHHHCCCEEEEcCC-
Confidence 3 2 4888874 57788888886 4777777888888888888888642 3567899999999999999985442
Q ss_pred eEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCC
Q 011947 261 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 340 (474)
Q Consensus 261 ~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~ 340 (474)
..+.|.|.+.++ +.++.+++|++++++++++++..++.++++|+..++++ .+++.|++||++|+.+++.+++.+..
T Consensus 211 ~~i~I~g~~~~~-~~~~~v~~d~~sa~~~l~~aa~~~~~~~i~~~~~~~~~---~~~~~L~~~G~~i~~~~~~i~v~~~~ 286 (417)
T PRK12830 211 DVIRIEGVDELH-GCRHTVIPDRIEAGTYMILAAACGGGVTINNVIPEHLE---SFIAKLEEMGVRVEVNEDSIFVEKQG 286 (417)
T ss_pred cEEEEccCCccc-CcEEeeCCCcHHHHHHHHHHHHhCCCEEEeCCChhHHH---HHHHHHHHCCCEEEEcCCEEEEEeCC
Confidence 378898865665 66777899998887666655555678889987654444 78899999999999888888887642
Q ss_pred CCCCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEe-cccccccccchhHHHHHHHHHHcCCEEEEeCCEEE
Q 011947 341 RDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIR-DVASWRVKETERMIAICTELRKLGATVEEGPDYCV 415 (474)
Q Consensus 341 ~~~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~-~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~ 415 (474)
+++|.+++..+.| |+.|.+++++++++|+++|. |+.+.|.|| .++|++||+++++++|+++
T Consensus 287 -------~l~~~~i~~~~~p~~~~D~~~~laa~a~~a~g~~~i~~~~~~~r~~~-------~~~L~~mGa~i~~~~~~l~ 352 (417)
T PRK12830 287 -------NLKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKRFKH-------VDELKRMGANIKVEGRSAI 352 (417)
T ss_pred -------CccceeeccCCCCCChHHHHHHHHHHHHcCCCcEEEEeccchhhHHH-------HHHHHHCCCeEEEECCEEE
Confidence 5899999988888 99999999999999999998 688776553 4789999999999999999
Q ss_pred EeCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 416 ITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 416 I~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
|+|+.+++|.+++. +|||++|+++++|+ +.++++|+|++|++++||+||+.|++||++
T Consensus 353 i~g~~~l~g~~v~~-~D~r~am~lav~a~~a~g~~~I~~~~~~~~~~~~~~~~L~~lG~~ 411 (417)
T PRK12830 353 ITGPSKLTGAKVKA-TDLRAGAALVIAGLMAEGVTEITNIEHIDRGYSNIIEKLKALGAD 411 (417)
T ss_pred EECCCCccCceecC-CchHHHHHHHHHHHcCCCcEEECChhHhhCCHHHHHHHHHHcCCe
Confidence 99876789999997 99999999999987 678899999999999999999999999974
No 16
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-51 Score=396.89 Aligned_cols=424 Identities=75% Similarity=1.156 Sum_probs=363.6
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEE-EEeCCcceEEE
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNV-EEDFAMKRAIV 106 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i-~~~~~~~~l~i 106 (474)
-+.+..+.||++..|.++ ++++.+|.++++|.|+++|+..|+.+|+.||... .|+++ ..+.+
T Consensus 106 ~~~i~~pgSKs~snrall----------------laa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~-~~~vv 168 (595)
T KOG0692|consen 106 SGLIKLPGSKSLSNRALL----------------LAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEEN-NRAVV 168 (595)
T ss_pred hceeeCCCCchhhhhHHH----------------HHHHhccceeccccccccchhhhhhhHHHhccccceecCC-CEEEE
Confidence 357889999999999998 8889999999999999999999999999999765 56655 58999
Q ss_pred EecCCCCCccccCCCcceEEecCchhhhHHHHH---HHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCC
Q 011947 107 EGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTA---AVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGT 183 (474)
Q Consensus 107 ~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a---~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~ 183 (474)
+|.|+.++.. .. .+.++..||.|+.+|+|.. +..+.++....+++|..++++||+.++++.|++.|++|++..+.
T Consensus 169 eG~gg~~~~~-~~-~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t 246 (595)
T KOG0692|consen 169 EGCGGEFSID-SK-SDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGT 246 (595)
T ss_pred EcCCCeeeec-hh-hhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccC
Confidence 9998754332 11 1347889999999999984 33333334458899999999999999999999999999998778
Q ss_pred CCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEcc-CCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 184 NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 184 ~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~-~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
+++|+.+.....++++.+.+.|.+|+|+.++++|+|+++.|++++..++ ...|.||+++++++|++||++++..+.+..
T Consensus 247 ~~~p~dv~~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~ 326 (595)
T KOG0692|consen 247 NCPPVDVNANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDR 326 (595)
T ss_pred CCCceeeeccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcc
Confidence 8999999866568899999999999999999999999999999999886 466899999999999999999998765445
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCC
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 342 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 342 (474)
+...++++|+.|.++.+++|.+++.||++.+++++.++++.|++..++|+|..|.+.|+.||+.+....+..++.|++..
T Consensus 327 ~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gp~~g 406 (595)
T KOG0692|consen 327 FYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRG 406 (595)
T ss_pred eEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhccccceeeeecccccccCCCCC
Confidence 55555667877888999999999999999999999999999999999999989999999999999999999999987643
Q ss_pred CCCCCCcceEEEcCCCCCcHHHHHHHHHHhC-----CCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEe
Q 011947 343 PYGRKHLRAVDVNMNKMPDVAMTLAVVALFA-----DGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417 (474)
Q Consensus 343 ~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a-----~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~ 417 (474)
-++-..++.+++ ....+|.+|++++.|+++ .++++|.++...|+|||+|+-.+..+|++||+.+++.+|++.|.
T Consensus 407 a~~~~~lr~iD~-m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~ 485 (595)
T KOG0692|consen 407 AFGMRHLRAIDV-MNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVI 485 (595)
T ss_pred cccceehhhhcc-cccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEe
Confidence 222223444333 555679999999999999 88999999999999999999999999999999999999999998
Q ss_pred CCC--Ccccceee---cCccHHHHHHHHHHH-cCCCCeEEeCCcccccccccHHHHHHhc
Q 011947 418 PPE--KLKVAAID---TYDDHRMAMAFSLAA-CADVPVTIKDPSCTRKTFPDYFDVLDSV 471 (474)
Q Consensus 418 g~~--~l~~~~v~---~~~Dhr~ama~~laa-l~~~~i~I~~~~~v~~s~p~f~~~l~~l 471 (474)
++. .++-++.+ ++.|||++|+|.++| .+..+++|+++.|..|+||+||+.|.+.
T Consensus 486 ~~~~k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~kt~p~y~~Vl~~~ 545 (595)
T KOG0692|consen 486 TPPEKKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPDYFQVLERI 545 (595)
T ss_pred CCchHhccchhhccccccccccchhhhhHHHhccCCCccccCCCccccccchHHHHHHHH
Confidence 764 36666665 889999999999665 5678899999999999999999999764
No 17
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-49 Score=393.09 Aligned_cols=334 Identities=24% Similarity=0.304 Sum_probs=261.1
Q ss_pred cccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--
Q 011947 25 NQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA-- 100 (474)
Q Consensus 25 ~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~-- 100 (474)
..++..|||+|||| ++||+++++++ ..++.++++| .+..|||.+++++||++||+|++.++
T Consensus 82 ~~~~~~l~~GnSGT-t~R~l~glla~--------------~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~ 146 (428)
T COG0128 82 KEPPAVLDCGNSGT-TLRLLTGLLAL--------------GSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEG 146 (428)
T ss_pred CCCCceeeeccchh-HHHHHHHHHhc--------------CCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCC
Confidence 45677899999999 99999986553 2346777777 78999999999999999999998764
Q ss_pred cceEEEEecCCCCCccccCCCcceEEecCchhhh-HHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEE
Q 011947 101 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAM-RPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVD 178 (474)
Q Consensus 101 ~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~-r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~ 178 (474)
.+|++|+|. +... ...++..-|++.. .+|+++++. .++.+.+.++ .+.++||++| +++|++||++|+
T Consensus 147 ~~Pl~i~G~---~~~~-----~i~i~~~~SSq~vsslL~~a~l~--~~~~~~~~~~-~~~s~~yid~T~~mL~~FGv~v~ 215 (428)
T COG0128 147 YLPLTIKGG---LKGG-----EVEIDGPVSSQQVSSLLLLAPLL--AEGTTIIVGG-VLESKPYIDHTLDMLKAFGVEVE 215 (428)
T ss_pred cCCEEEECC---CCCc-----eEEEeccchHHHHHHHHHHHhhc--CCCcEEEecC-ccCCccHHHHHHHHHHHcCCeEE
Confidence 379999995 1221 2244433333322 356655554 2455555543 3889999999 999999999998
Q ss_pred eeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceE-EEEccCCCCchhHHHHHHHHHHcCCEEEEe
Q 011947 179 CILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE-IEIIDKLISVPYVEMTLKLMERFGVFVEHS 257 (474)
Q Consensus 179 ~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~-I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~ 257 (474)
.+ ++ .|.|+|+|++.+++|.||||+||+ +.|+.||+++. .++ |... +...+|.+...+++|++||++|++.
T Consensus 216 ~~---~~-~~~i~~g~~~~~~~~~VpgD~SSA--afflaAaai~~-~~~~i~~~-~v~~~~~~~~~~~vl~~MGa~i~~~ 287 (428)
T COG0128 216 NE---GY-RFYIPGGQKLTPGDYDVPGDYSSA--AFFLAAAAITP-RSTGITLK-NVQPNPTDKGILDVLEKMGADIEIG 287 (428)
T ss_pred ee---cc-EEEECCCccccCceEEcCCChhhH--HHHHHHHHhcC-CCceeeec-cCCcCcchhHHHHHHHHcCCeEEEc
Confidence 74 33 699999877999999999999996 44444555553 333 3322 2334577888999999999999998
Q ss_pred CceeEEEEeCCCcccCCcce--eecCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecC
Q 011947 258 DSWDRFFIQGGQKYKSPGNA--FVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTEN 332 (474)
Q Consensus 258 ~~~~~i~i~~~~~l~~~~~~--~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~ 332 (474)
+++ .++|++...++ +.++ ...+|. +++++++|++++|+++|+|+.+.|+| +| .++.++|++||++|++.+|
T Consensus 288 ~~~-~l~V~~~~~l~-gi~vd~~~~pD~--~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~D 363 (428)
T COG0128 288 DDS-VLRVRGSGELK-GIEVDMDDMPDL--APTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETED 363 (428)
T ss_pred cCc-eEEEeecCCcc-CeEeCcccCchH--HHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCC
Confidence 762 35888765576 5543 233444 34788889999999999999999999 77 8999999999999999999
Q ss_pred eEEEeCCCCCCCCCCCcceE-EEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEE
Q 011947 333 SVTVTGPPRDPYGRKHLRAV-DVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATV 407 (474)
Q Consensus 333 ~i~i~g~~~~~~~~~~l~g~-~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i 407 (474)
++.|+|.. +++|. .+++|+|||++|+++++++.++++++|+|++|++++ ||+||+.|+++|+++
T Consensus 364 gl~I~g~~-------~l~g~~~v~s~~DHRiaMa~aia~l~~~~~v~I~~~~~v~kS----fP~F~~~l~~l~~~~ 428 (428)
T COG0128 364 GLIITGGT-------KLKGAGTVDSYGDHRIAMAFAVAGLLSEGGVRIDDAECVAKS----FPGFFEDLASLGARI 428 (428)
T ss_pred eEEEECCC-------CCCCCccccCcCcHHHHHHHHHHHhhcCCCEEEcCccceecc----CchHHHHHHHhhCCC
Confidence 99999973 68888 499999999999999999999988999999999754 999999999999863
No 18
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=1.5e-42 Score=356.99 Aligned_cols=333 Identities=21% Similarity=0.228 Sum_probs=256.9
Q ss_pred ccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--c
Q 011947 26 QKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--M 101 (474)
Q Consensus 26 ~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~--~ 101 (474)
.++..|||++||| ++||++++ +++++++++|+| .+.+||+..++++|++||+++++.++ .
T Consensus 67 ~~~~~i~~g~sgt-~~r~l~~l---------------~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~ 130 (409)
T TIGR01356 67 EPQAELDLGNSGT-TARLLTGV---------------LALADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGS 130 (409)
T ss_pred CCCCEEEecCchH-HHHHHHHH---------------HHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCc
Confidence 3456899999999 99999974 446678899998 47889999999999999999987643 3
Q ss_pred ceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhc--CCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEe
Q 011947 102 KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA--GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDC 179 (474)
Q Consensus 102 ~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~--~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~ 179 (474)
.|++|+|. .... ...++.+.| .|++.+++++. .....+++.|++.+.+||+..++++|++||++|+.
T Consensus 131 ~p~~i~~~---~~~~-----~~~i~~~~S---~q~~salllaa~~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~ 199 (409)
T TIGR01356 131 LPLTISGP---LPGG-----IVYISGSAS---SQYKSALLLAAPALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVER 199 (409)
T ss_pred CCEEEecC---CCCC-----eEEeCCCcc---hHHHHHHHHhccccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEE
Confidence 58999874 1112 223443322 34444444332 24567888886667666777779999999999986
Q ss_pred eCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCc
Q 011947 180 ILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS 259 (474)
Q Consensus 180 ~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~ 259 (474)
.+ ..+++|+|.+.+++.+|+|++|+|+. +.|++|+++++++++|++... .+.+.+..++++|++||++|++.++
T Consensus 200 ~~---~~~i~I~g~~~l~~~~~~i~~D~ssa--~~ll~aa~l~~g~i~i~~~~~-~~~~~~~~~~~~L~~~Ga~i~~~~~ 273 (409)
T TIGR01356 200 SD---GRKIVVPGGQKYGPQGYDVPGDYSSA--AFFLAAAAITGGRVTLENLGI-NPTQGDKAIIIVLEEMGADIEVEED 273 (409)
T ss_pred cC---CcEEEECCCCccCCCeeECCCCHHHH--HHHHHHHHhcCCEEEECCCCC-CCCCCcHHHHHHHHHcCCeEEEeCC
Confidence 42 23799988645888899999999994 444445556666788876543 2334456678999999999998765
Q ss_pred eeEEEEeCCCcccCCcceeecCCchhhHH-HHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCeEE
Q 011947 260 WDRFFIQGGQKYKSPGNAFVEGDASSASY-FVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVT 335 (474)
Q Consensus 260 ~~~i~i~~~~~l~~~~~~~~~~D~~~a~~-ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~ 335 (474)
.++|.+.+.++ +.++. .+|++.+++ +++++++++|+++|+|+.+.+++ +| ..++++|++||+++++.+|+++
T Consensus 274 --~i~v~~~~~l~-~~~~~-~~d~~d~~~~l~~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d~i~ 349 (409)
T TIGR01356 274 --DLIVEGASGLK-GIKID-MDDMIDELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDGLY 349 (409)
T ss_pred --eEEEEecCCCc-cEEEE-CCCChhHHHHHHHHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCCeEE
Confidence 78887654555 55665 357775555 55578888999999999887776 66 6799999999999999999999
Q ss_pred EeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCE
Q 011947 336 VTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGAT 406 (474)
Q Consensus 336 i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~ 406 (474)
|.|.. .++|.++++++|||++|+++++|++++|+++|+|++|+.+ | ||+||+.|++||++
T Consensus 350 i~g~~-------~l~g~~i~~~~d~r~am~lav~a~~~~g~~~I~n~~~v~~--s--~p~f~~~l~~lg~~ 409 (409)
T TIGR01356 350 IRGKK-------ELKGAVVDTFGDHRIAMAFAVAGLVAEGEVLIDDPECVAK--S--FPSFFDVLERLGAN 409 (409)
T ss_pred EECCC-------CCCCCeeeCCCcHHHHHHHHHHHhcCCCCeEEcCcCeeec--c--CchHHHHHHHhhCC
Confidence 98752 5788999999999999999999999999999999999864 3 99999999999974
No 19
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=7.4e-41 Score=347.25 Aligned_cols=337 Identities=23% Similarity=0.290 Sum_probs=257.0
Q ss_pred ccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEe-CCcc
Q 011947 26 QKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEED-FAMK 102 (474)
Q Consensus 26 ~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~-~~~~ 102 (474)
.+...+|+++||+ ++||+++ ++++++++++|+| .+.+||+..++++|++||+++++. ++..
T Consensus 82 ~~~~~i~~~~sg~-~~r~l~~---------------laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~~~~~~~ 145 (435)
T PRK02427 82 EPEDVLDCGNSGT-TMRLLTG---------------LLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEGRDEGYL 145 (435)
T ss_pred CCCCEEEccCchH-HHHHHHH---------------HHHhCCCeEEEECChhhccCChHHHHHHHHHCCCEEEeCCCCCC
Confidence 3556799999999 9999985 4557788999999 668999999999999999999973 2335
Q ss_pred eEEEEecCCCCCccccCCCcceEEecCchhhhHH-HHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEee
Q 011947 103 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRP-LTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCI 180 (474)
Q Consensus 103 ~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~-L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~ 180 (474)
|++|+|.. ... ...++.+.|++..+. |+++++. . ++.+++++..++.+|||.++ +++|++||++++..
T Consensus 146 ~i~i~g~~---~~~-----~~~i~~~~ss~~~~~lll~aa~~-~-~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~ 215 (435)
T PRK02427 146 PLTIRGGK---KGG-----PIEYDGPVSSQFVKSLLLLAPLF-A-EGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENV 215 (435)
T ss_pred CEEEecCC---cCc-----cEEecCCcCCHHHHHHHHHHhhc-c-CCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEee
Confidence 89998731 111 245777777666553 3333332 1 24444444446889999996 99999999999832
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHh-hcCCC-ceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAA-PLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD 258 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa-~l~~g-~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~ 258 (474)
++.++.+++|++++.+++.++.+++|+|++ ++++++ .++++ +++|.+... .+.+++.+++++|++||++|+..+
T Consensus 216 ~~~~~~~i~I~g~~~l~~~~~~i~~D~ssa---~~ll~aa~~~~g~~i~i~~~~~-~~~~~~~~~l~~L~~~G~~v~~~~ 291 (435)
T PRK02427 216 EGWGYRRIVIKGGQRLRGQDITVPGDPSSA---AFFLAAAAITGGSEVTITNVGL-NSTQGGKAIIDVLEKMGADIEIEN 291 (435)
T ss_pred cCCcccEEEECCCcccccceEEeCCCHHHH---HHHHHHHHhCCCCeEEEeCCCC-CCCcchHHHHHHHHHcCCceEecc
Confidence 222346899988656888899999999994 555544 45566 677776532 344556789999999999998644
Q ss_pred ce------eEEEEeCCCcccCCcceeecCCchhhHH-HHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEE
Q 011947 259 SW------DRFFIQGGQKYKSPGNAFVEGDASSASY-FVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVT 328 (474)
Q Consensus 259 ~~------~~i~i~~~~~l~~~~~~~~~~D~~~a~~-ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~ 328 (474)
+. ..++|.+ ++++ +.++. .+|++.+.+ +++++++++|+++|+|+...+.+ +| ..++++|++||++++
T Consensus 292 ~~~~~~~~~~i~i~~-~~l~-~~~~~-~~d~~d~~~~l~~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~ 368 (435)
T PRK02427 292 EREGGEPVGDIRVRS-SELK-GIDID-IPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVE 368 (435)
T ss_pred ccccCCccCcEEEec-CCcc-cEEee-cCCCchHHHHHHHHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEE
Confidence 20 1377763 4565 55665 568877666 55566788999999999877754 66 579999999999999
Q ss_pred EecCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEE
Q 011947 329 WTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVE 408 (474)
Q Consensus 329 ~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~ 408 (474)
+.+|.++|.|. +++|. +++++|||++|+++++|++++|+++|+|++++++. ||+||+.|++||++++
T Consensus 369 ~~~~~i~i~g~--------~~~~~-v~~~~d~r~a~~l~~~a~~a~g~~~i~~~~~v~~~----~p~f~~~l~~lg~~i~ 435 (435)
T PRK02427 369 ETEDGLIITGG--------PLAGV-VDSYGDHRIAMAFAIAGLAAEGPVTIDDPECVAKS----FPDFFEDLASLGANIE 435 (435)
T ss_pred EeCCeEEEECC--------CCCCC-ccCCCcHHHHHHHHHHHHcCCCCEEEeccCeeecc----CCCHHHHHHHHhccCC
Confidence 99999999875 34777 99999999999999999999999999999999743 9999999999999863
No 20
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=2.3e-39 Score=336.27 Aligned_cols=332 Identities=19% Similarity=0.242 Sum_probs=241.7
Q ss_pred eEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecC--CCCHhHHHHHHHHHHcCCEEEEeCC--cceE
Q 011947 29 RKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFA--MKRA 104 (474)
Q Consensus 29 ~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~--l~~r~i~~~i~aL~~lGa~i~~~~~--~~~l 104 (474)
..|||+|||| ++|||+++++.. -.+++++++|. +.+||+.+++++|++||++|++.++ ..|+
T Consensus 92 ~~i~~g~sgt-~~r~l~~~~~~~-------------~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~~~~~pi 157 (443)
T PLN02338 92 VELFLGNAGT-AMRPLTAAVTAA-------------GGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPV 157 (443)
T ss_pred ceEEcCCcch-HHHHHHHHHHhC-------------CCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCCCCcCCE
Confidence 5799999999 999999653321 13578889884 4799999999999999999986443 3689
Q ss_pred EEEecCCCCCccccCCCcceEEecCchh-hhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCC
Q 011947 105 IVEGCGGLFPLAKQQTGEIELFLGNAGT-AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILG 182 (474)
Q Consensus 105 ~i~g~~~~~~~~~~s~~~~~i~~g~sg~-t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~ 182 (474)
+|+|.++ ++.. +..+...-|.. ..-+|++++++ ++.+++.+..++.++||+++ +++|++||++++..+
T Consensus 158 ~i~g~~~-l~~~-----~~~i~g~~Ssq~~sall~aa~~~---~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~- 227 (443)
T PLN02338 158 RVNAAGG-LPGG-----KVKLSGSISSQYLTALLMAAPLA---LGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSD- 227 (443)
T ss_pred EEECCCC-CCCc-----eEEECCCCchHHHHHHHHHHhcC---CCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecC-
Confidence 9987542 4332 12232111222 12244444333 34556666556789999999 999999999998632
Q ss_pred CCCCcEEEecCCCCC-CeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee
Q 011947 183 TNCPPVRINGKGGLP-GGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 261 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~-~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~ 261 (474)
+..+++|.+.+.+. +.++.|++|+|+| +.|++++++++++++|++++.... +.+..++++|++||++|++.++
T Consensus 228 -~~~~i~i~~~~~l~~~~~~~i~~D~ssa--~~~la~a~~~~g~v~i~~~~~~~~-~~d~~~l~~L~~mGa~v~~~~~-- 301 (443)
T PLN02338 228 -SWDRFFIKGGQKYKSPGNAYVEGDASSA--SYFLAGAAITGGTVTVEGCGTTSL-QGDVKFAEVLEKMGAKVEWTEN-- 301 (443)
T ss_pred -CceEEEEcCCccccCCCeEEeCCCHHHH--HHHHHHHHhcCCeEEECCCCCCCC-cchhHHHHHHHHcCCeEEEcCC--
Confidence 23468998753465 5799999999997 444545556677888887654333 3456789999999999998665
Q ss_pred EEEEeCCC-------cccCCcceeecCCchh-hHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEe
Q 011947 262 RFFIQGGQ-------KYKSPGNAFVEGDASS-ASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 262 ~i~i~~~~-------~l~~~~~~~~~~D~~~-a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~ 330 (474)
.+.+.+.. .++ +.++. ..|+.. ++++++++++++|+++|+|+.+.+++ +| ..+.++|++||+++++.
T Consensus 302 ~i~i~~~~~~~~~~~~l~-~~~~d-~~~~~d~~~~la~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~~~ 379 (443)
T PLN02338 302 SVTVTGPPRDAFGGKHLK-AIDVN-MNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEG 379 (443)
T ss_pred eEEEcCCcccccccCCcc-ceEEC-cccChhHHHHHHHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEEEe
Confidence 67776531 122 22221 122222 33556667778999999998887776 45 68999999999999999
Q ss_pred cCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcC
Q 011947 331 ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 404 (474)
Q Consensus 331 ~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG 404 (474)
+|.++|.|.. .++|.++++++|||++|+++++|+. .++++|+|++|+++ | ||+||+.|++|.
T Consensus 380 ~d~l~I~g~~-------~l~g~~i~~~~DhR~ama~ala~l~-~~~~~i~~~~~v~k--s--~P~f~~~l~~~~ 441 (443)
T PLN02338 380 PDYCIITPPK-------KLKPAEIDTYDDHRMAMAFSLAACG-DVPVTINDPGCTRK--T--FPTYFDVLESIA 441 (443)
T ss_pred CCEEEEECCC-------CCCCCeEECCCcHHHHHHHHHHHHc-CCCEEEecCCeeec--c--CccHHHHHHHHh
Confidence 9999998742 5889999999999999999988875 56799999999964 4 999999999874
No 21
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=2.2e-39 Score=350.42 Aligned_cols=330 Identities=18% Similarity=0.218 Sum_probs=248.6
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--cce
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKR 103 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~--~~~ 103 (474)
..+|+|+|||| ++|||+++++ +..+.++|+| .+.+||+.+++++|++||+++++.++ ..|
T Consensus 323 ~~~i~~g~sGt-~~r~L~~~~a---------------~~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~~~~~~~p 386 (673)
T PRK11861 323 TADLFLGNAGT-AVRPLTAALA---------------VNGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFPP 386 (673)
T ss_pred CceEecCCcch-HHHHHHHHHH---------------cCCCeEEEECChhhccCChhHHHHHHHHCCCcEEeCCCCCCCC
Confidence 45689999999 9999997544 4456777776 67899999999999999999987542 268
Q ss_pred EEEEecCCCCCccccCCCcceEEecCchhhh-HHHHHHHHhc-CCCcE-EEEeCCCCcCCCChhhH-HHHHHhCCCEEEe
Q 011947 104 AIVEGCGGLFPLAKQQTGEIELFLGNAGTAM-RPLTAAVTAA-GGNLS-YILDGVPRMRERPIGDL-VTGLKQLGADVDC 179 (474)
Q Consensus 104 l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~-r~L~a~~~~~-~~~~~-i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~ 179 (474)
++|+|.+ +..+. ...+...-|.+.. -+|++++.+. .++.+ +.+.|. ..++||+++ +++|++||++|+.
T Consensus 387 ~~I~g~~--~~~~~----~~~v~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~--~~S~pyv~~t~~~L~~fG~~V~~ 458 (673)
T PRK11861 387 LRIRPAT--ISVDA----PIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGE--LISKPYIEITIKLMARFGVTVER 458 (673)
T ss_pred EEEECCC--cCCCC----eEEeCCCccHHHHHHHHHHhHhhccCCCCEEEEECCc--cCCcCHHHHHHHHHHHCCCEEEE
Confidence 9998753 21110 1122221122211 1334443321 11233 555553 448999997 9999999999986
Q ss_pred eCCCCCCcEEEecCCCC-CCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC
Q 011947 180 ILGTNCPPVRINGKGGL-PGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD 258 (474)
Q Consensus 180 ~~~~~~~~i~I~~~~~~-~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~ 258 (474)
. +..+++|.+++.+ .+.+|.|++|+|++ +.|+++|++++++++|++++. .+.|.+..++++|++||++|++++
T Consensus 459 ~---~~~~i~V~~~~~~~~~~~~~V~~D~SsA--a~~laaAal~~g~v~I~g~~~-~~~q~d~~i~~iL~~mGa~i~~~~ 532 (673)
T PRK11861 459 D---GWQRFTVPAGVRYRSPGTIMVEGDASSA--SYFLAAGALGGGPLRVEGVGR-ASIQGDVGFANALMQMGANVTMGD 532 (673)
T ss_pred c---CCcEEEEcCCcccCCCceeECCCChHHH--HHHHHHHHhcCCeEEECCCCC-CCCchHHHHHHHHHHcCCcEEEeC
Confidence 3 2235888765455 46799999999996 667777778888899998764 344567788899999999999877
Q ss_pred ceeEEEEeCC----CcccCCc--ceeecCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEE
Q 011947 259 SWDRFFIQGG----QKYKSPG--NAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTW 329 (474)
Q Consensus 259 ~~~~i~i~~~----~~l~~~~--~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~ 329 (474)
+ .++|.+. ..++ +. ++...||.. +++++++++++|+++|+|+.+.|+| +| .++.++|++||+++++
T Consensus 533 ~--~i~i~~~~~~~~~l~-~~~iD~~~~pDl~--p~laalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~ 607 (673)
T PRK11861 533 D--WIEVRGIGHDHGRLA-PIDMDFNLIPDAA--MTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEE 607 (673)
T ss_pred C--eEEEeeccccCCCcc-ceeeccccCchHH--HHHHHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEE
Confidence 6 5777642 1233 33 455677875 4889999999999999999998888 67 5899999999999999
Q ss_pred ecCeEEEeCCCCCCCCCCCcce-EEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcC
Q 011947 330 TENSVTVTGPPRDPYGRKHLRA-VDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 404 (474)
Q Consensus 330 ~~~~i~i~g~~~~~~~~~~l~g-~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG 404 (474)
.+|+++|+|.. .++| .++++++|||++|+++++++. .++++|+|++|+.+ | ||+||++|+++|
T Consensus 608 ~~d~l~I~g~~-------~l~~~~~v~s~~DHRiaM~~av~~l~-~~~~~i~~~~~v~k--S--~P~F~~~~~~l~ 671 (673)
T PRK11861 608 GADYLVVTPPA-------QLTPNASIDTYDDHRMAMCFSLVSLG-GVPVRINDPKCVGK--T--FPDYFDRFLALA 671 (673)
T ss_pred eCCeEEEECCC-------CCCCCceEECCCCHHHHHHHHHHHhC-CCCEEEecCCeeec--c--CccHHHHHHHHh
Confidence 99999999842 5775 889999999999999999996 56799999999975 4 999999999987
No 22
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=100.00 E-value=1.6e-39 Score=334.69 Aligned_cols=324 Identities=23% Similarity=0.262 Sum_probs=246.3
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--cce
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKR 103 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~--~~~ 103 (474)
...+++++||| ++|||+++++. ..+.+++.| .+..||+++++++|++||+++++.++ ..|
T Consensus 83 ~~~i~~g~Sgt-~lr~L~~~~~~---------------~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~p 146 (419)
T PF00275_consen 83 DIVIDVGNSGT-TLRFLLALLAL---------------APGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNGEGFLP 146 (419)
T ss_dssp HHHEEECCGHH-HHHHHHHHHSE---------------ESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETTEEEEE
T ss_pred ccceeeccChh-HHhHHHHHHhe---------------eeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecCCceEE
Confidence 46899999999 99999987664 345666665 67899999999999999999998765 368
Q ss_pred EEEEecCCCCCccccCCCcceEEecCchhhh-HHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeC
Q 011947 104 AIVEGCGGLFPLAKQQTGEIELFLGNAGTAM-RPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCIL 181 (474)
Q Consensus 104 l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~-r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~ 181 (474)
++|+|.. .. ...++...|++.. -+|++++.. ..+++++.+ ..++||+++ +++|++||++|+...
T Consensus 147 i~i~~~~----~~-----~~~i~~~~sSq~vs~lll~A~~~--a~g~i~i~~---~~s~p~i~~t~~~L~~~G~~i~~~~ 212 (419)
T PF00275_consen 147 IRIRGLK----GG-----PIEIDGDISSQFVSALLLAAALL--ARGEITIIN---PASEPYIDMTIDMLKKFGAKIEVDG 212 (419)
T ss_dssp ECEEESS----SB-----EEEEETSSSHHHHHHHHHHHHTT--SBSEEEEES---ESSSHHHHHHHHHHHHTT-EEEETT
T ss_pred EEEeecc----cC-----cEEEeccCCCHHHHHHHHHHHHh--cCCceEEeC---CCCCCcHHHHHHHHhhceEEEEEcc
Confidence 8888731 11 2345544444322 244444433 234888887 568999999 999999999999742
Q ss_pred CCCCCcEEEecCCC-CCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHH-HHHHcCCEEEEeCc
Q 011947 182 GTNCPPVRINGKGG-LPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLK-LMERFGVFVEHSDS 259 (474)
Q Consensus 182 ~~~~~~i~I~~~~~-~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~-~L~~~G~~i~~~~~ 259 (474)
+ ...+.|+|.+. +.+.+|+||+|||++ +.|+.|+++++|+++|+++.. .+.|++..+++ +|++||++|+.+++
T Consensus 213 ~--~~~~~i~g~~~~~~~~~~~v~~D~s~A--a~~l~aa~l~~g~v~i~~~~~-~~~~gd~~~l~~iL~~mG~~i~~~~~ 287 (419)
T PF00275_consen 213 D--ENIISIPGGQYILPGCEYTVPGDWSSA--AFFLAAAALTGGEVTIKNLPP-NSLQGDKEFLDDILRRMGAKIEEEDD 287 (419)
T ss_dssp S--TTEEEEETTSSBBBSEEEE--B-HHHH--HHHHHHHHHCTTEEEEESEEG-GGGHHHHHHHHHHHHHTTEEEEEESE
T ss_pred C--CcEEEEEeccccccceeEEecCCHHHH--HHHHHHHheeCcEEEEEecCc-hhhhhhHHHHHHHHHHhCCCcccCCC
Confidence 2 22599999866 556699999999996 556666678888999998764 45667777888 99999999998875
Q ss_pred eeEEEEeCCCccc-CCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCeEE
Q 011947 260 WDRFFIQGGQKYK-SPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVT 335 (474)
Q Consensus 260 ~~~i~i~~~~~l~-~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~ 335 (474)
..+.+.+. .+. ...++...+|..+ ++.++++++.+++++.|+.+.+.| +| ..++++|++||+++++.+|.++
T Consensus 288 -~~~~~~~~-~~~~~~~di~~~pd~~p--~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~~~d~l~ 363 (419)
T PF00275_consen 288 -GVIVVGGS-GLRGIEIDISDAPDLAP--TLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEEDGDGLI 363 (419)
T ss_dssp -EEEEEEET-TSBEBEEEEEBCSTTCH--HHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEEETTEEE
T ss_pred -eeEEEecc-cccccccccccCccchh--HHHHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEEECCEEE
Confidence 24555443 232 1234455566644 778888888999999999888777 66 7899999999999999999999
Q ss_pred EeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCC-CeEEecccccccccchhHHHHHHHH
Q 011947 336 VTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADG-PTAIRDVASWRVKETERMIAICTEL 400 (474)
Q Consensus 336 i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g-~~~I~~~~~~r~kesdR~~~~~~~L 400 (474)
|.|.. .+++|.++++++|||++|+++++|+.++| +++|+|++|+.+. ||+||++|
T Consensus 364 i~~~~------~~~~g~~v~s~~DhRiaMa~~va~l~~~g~~~~I~~~~~v~ks----yP~F~~~L 419 (419)
T PF00275_consen 364 IHGGR------PPLKGAEVDSYNDHRIAMALAVAALAAKGEPITIENAECVSKS----YPNFWEDL 419 (419)
T ss_dssp EEEES------E-CBSEEEE-TTSHHHHHHHHHHHHHSBSSEEEEETTHHHHHT----STTHHHHH
T ss_pred EECCc------cCCCCcEEEecHHHHHHHHHHHHhcccCCCeEEEcccceEecc----CcChHhhC
Confidence 87753 14899999999999999999999999999 9999999998643 99999987
No 23
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=9.9e-38 Score=321.80 Aligned_cols=318 Identities=20% Similarity=0.244 Sum_probs=244.2
Q ss_pred cCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecC
Q 011947 33 CNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG 110 (474)
Q Consensus 33 ~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~ 110 (474)
...|++ ++||++++++.. ..++++++| .+.+||++.++++|++||++|++.++. +.|++.+
T Consensus 89 ~~~s~~-s~~~l~~~~~~~--------------~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~~--~~v~~~g 151 (417)
T PRK09369 89 VKKMRA-SILVLGPLLARF--------------GEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHGY--VEAKADG 151 (417)
T ss_pred Hhhhhh-HHHHHHHHhccC--------------CceEEEecCCCccCCCchHHHHHHHHHCCCEEEEECCE--EEEEecC
Confidence 345777 788888654321 233566665 678899999999999999999877543 4444432
Q ss_pred CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcEEE
Q 011947 111 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 190 (474)
Q Consensus 111 ~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i~I 190 (474)
.++.. +..+++++|++++|+|++++++ ++.+++.+.. .++|+..++++|++||++|+.. ++.++.|
T Consensus 152 -~l~~~-----~~~l~~~ss~~~~~ll~aa~~~---~g~~~i~~~~--~~~~i~~~~~~L~~~G~~v~~~---~~~~i~I 217 (417)
T PRK09369 152 -RLKGA-----HIVLDFPSVGATENILMAAVLA---EGTTVIENAA--REPEIVDLANFLNKMGAKISGA---GTDTITI 217 (417)
T ss_pred -Ccccc-----eEeCCCCCHHHHHHHHHHHHhC---CCcEEEeCCC--cCCcHHHHHHHHHHCCCEEEEc---CCceEEE
Confidence 23332 3466778999898999987654 4566677643 3556666699999999999852 3347999
Q ss_pred ecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCc
Q 011947 191 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 270 (474)
Q Consensus 191 ~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~ 270 (474)
+|++.+++.++++++|+|.. ++|++++++++++++|.+. +.++.+.++++|++||++|+++++ .+++.+.+.
T Consensus 218 ~g~~~~~~~~~~v~~D~s~a--s~ll~aa~l~~g~v~i~~~----~~~~~~~~~~~L~~~G~~v~~~~~--~i~v~~~~~ 289 (417)
T PRK09369 218 EGVERLHGAEHTVIPDRIEA--GTFLVAAAITGGDVTIRGA----RPEHLEAVLAKLREAGAEIEEGED--GIRVDMPGR 289 (417)
T ss_pred cCCCccCCceEEecCCHHHH--HHHHHHHHHcCCceEEecC----ChhHHHHHHHHHHHcCCEEEEcCC--EEEEeeCCC
Confidence 98766888899999999865 7788888778888888753 345678899999999999998765 678875434
Q ss_pred ccCCccee------ecCCchhhHHHHHHHhccCCeEEEec-cCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCC
Q 011947 271 YKSPGNAF------VEGDASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 343 (474)
Q Consensus 271 l~~~~~~~------~~~D~~~a~~ll~~aa~~~g~~~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~ 343 (474)
++ +.++. +++|++ +++++++++++|+.++.| +.++| ..++++|++||+++++.+|.++|+|..
T Consensus 290 l~-~~~i~~~~~p~v~~D~~--~~l~~~aa~a~g~~~i~~~~~~~r----~~~~~~L~~mG~~i~~~~~~l~i~g~~--- 359 (417)
T PRK09369 290 LK-AVDIKTAPYPGFPTDMQ--AQFMALLTQAEGTSVITETIFENR----FMHVPELIRMGADIEVDGHTAVVRGVE--- 359 (417)
T ss_pred cc-ceEEecCCCCCCHHHHH--HHHHHHHHhCCCeEEEEecccccH----HHHHHHHHHCCCeEEEECCEEEEECCC---
Confidence 54 44443 334776 388888888888888875 66554 368999999999999999999998842
Q ss_pred CCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEE
Q 011947 344 YGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVE 408 (474)
Q Consensus 344 ~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~ 408 (474)
+++|.++++ +|||++|+++++|++++|+++|+|++|+.+ | ||+|+++|++||++++
T Consensus 360 ----~l~g~~i~~-~D~r~am~~a~~a~~a~g~~~I~~~~~v~r--s--~~~~~~~l~~lG~~i~ 415 (417)
T PRK09369 360 ----KLSGAPVMA-TDLRASASLVLAGLVAEGTTIVDRIYHLDR--G--YERIEEKLRALGADIE 415 (417)
T ss_pred ----CccccEEec-CcHHHHHHHHHHHHcCCCcEEECChhHHhC--C--HHHHHHHHHhCCCEEE
Confidence 588888987 799999999999999999999999998832 2 9999999999999886
No 24
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=4.6e-37 Score=331.45 Aligned_cols=350 Identities=18% Similarity=0.168 Sum_probs=258.7
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--cce
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKR 103 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~--~~~ 103 (474)
...|++++||| ++|||+++ +++.+|.++|+| .+.+||+.+++++|++||+++++.++ ..|
T Consensus 87 ~~~i~~g~sGt-t~r~Ll~~---------------~al~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~~~~g~~p 150 (661)
T PRK11860 87 QADLFLGNAGT-AMRPLTAA---------------LALLGGEYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEGFPP 150 (661)
T ss_pred CceEEeCCchH-HHHHHHHH---------------HHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEEcCCCCccc
Confidence 45689999999 99999964 336678888888 56799999999999999999987542 368
Q ss_pred EEEEecCCCCC-ccccCCCcceEEecCchhh-hHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEee
Q 011947 104 AIVEGCGGLFP-LAKQQTGEIELFLGNAGTA-MRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCI 180 (474)
Q Consensus 104 l~i~g~~~~~~-~~~~s~~~~~i~~g~sg~t-~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~ 180 (474)
++|.|.+ +. .. +..+...-|++. .-+|++++++. +..+.+.+.....++||+++ +++|++||++++..
T Consensus 151 i~I~g~~--l~~g~-----~i~i~gd~SSq~~SalLlAA~~~~--g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~ 221 (661)
T PRK11860 151 LRIGPAP--LRLDA-----PIRVRGDVSSQFLTALLMALPLVA--RRDITIEVVGELISKPYIEITLNLLARFGIAVQRE 221 (661)
T ss_pred EEEECCC--cCCCc-----eEEEcCCCcHHHHHHHHHHHHhCC--CCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEec
Confidence 8998632 32 21 123332233331 13666666652 23444555434568999999 99999999999863
Q ss_pred CCCCCCcEEEecCCCCC-CeeEEEcCCCCHHHHHHHHHHhhcCCC-ceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC
Q 011947 181 LGTNCPPVRINGKGGLP-GGKVKLSGKLSSQYLTALLMAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD 258 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~-~~~~~i~gd~Ss~~~sall~aa~l~~g-~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~ 258 (474)
+ ...++|.+++++. +.+|.|++|+|++ +.|+.+|++++| +++|+++.. .+.|++..+++.|++||++++..+
T Consensus 222 ~---~~~i~v~~~~~l~~~~~~~V~~D~s~a--~~l~aaaa~~~G~~v~i~~v~~-~~~q~d~~il~~L~kmGa~i~~~~ 295 (661)
T PRK11860 222 G---WQRFTIPAGSRYRSPGEIHVEGDASSA--SYFIAAGAIAGGAPVRIEGVGR-DSIQGDIRFAEAARAMGAQVTSGP 295 (661)
T ss_pred C---CcEEEEcCCcccCCCceeEcCCCHHHH--HHHHHHHHhCCCCeEEECCCCC-CCCccHHHHHHHHHHcCCEEEEeC
Confidence 2 2248887654564 5689999999996 455555667777 799988764 345667889999999999999887
Q ss_pred ceeEEEEeCC-CcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCeE
Q 011947 259 SWDRFFIQGG-QKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSV 334 (474)
Q Consensus 259 ~~~~i~i~~~-~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i 334 (474)
+ .+.+.+. ..++ +.++....|...++.+++++++++|+++|+|+.+.+++ +| ..+.++|++||+++++.+|++
T Consensus 296 ~--~i~i~~~~~~l~-g~~id~~~~pdi~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~i~~~~d~l 372 (661)
T PRK11860 296 N--WLEVRRGAWPLK-AIDLDCNHIPDAAMTLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVEEGADYI 372 (661)
T ss_pred C--EEEEEecCCCCc-ceEEcCcCChHHHHHHHHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCEEEEeCCeE
Confidence 6 6778753 2344 44443333333455777888888999999999988888 66 589999999999999999999
Q ss_pred EEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhC-CCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCE
Q 011947 335 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFA-DGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDY 413 (474)
Q Consensus 335 ~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a-~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~ 413 (474)
+|+|.+. ...++|.++++++|||++|+++++++.+ +++++|+|++|+.+ | ||+||+.|++||..=....-.
T Consensus 373 ~I~g~~~----~~~~~g~~v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~k--s--yP~F~~~l~~Lg~~~~~~~~~ 444 (661)
T PRK11860 373 RVTPPAQ----AADWKAAAIHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAK--T--FPDYFEALFSVAQADADRVPV 444 (661)
T ss_pred EEECCCc----ccCCCCccccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeec--C--CCChHHHHHHhcCCcccCcce
Confidence 9998521 0137888999999999999999999985 66788999999964 4 999999999998532222335
Q ss_pred EEEeCC
Q 011947 414 CVITPP 419 (474)
Q Consensus 414 l~I~g~ 419 (474)
+.|.|+
T Consensus 445 i~i~g~ 450 (661)
T PRK11860 445 ICIDGP 450 (661)
T ss_pred EEeeCC
Confidence 778875
No 25
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=2e-36 Score=312.21 Aligned_cols=302 Identities=22% Similarity=0.279 Sum_probs=232.2
Q ss_pred CC-eeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHh
Q 011947 67 QG-TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTA 143 (474)
Q Consensus 67 ~g-~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~ 143 (474)
++ +++++| .+..||+.+++++|++||+++++.+ .+++|++.+ ++.. +..++++++++++++|++++.+
T Consensus 106 ~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~--~~i~v~~~~--l~~~-----~~~ld~~ss~~~~~ll~a~~~~ 176 (417)
T PRK12830 106 KKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEG--GAIYLKADE--LKGA-----HIYLDVVSVGATINIMLAAVKA 176 (417)
T ss_pred CceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcC--CEEEEEeCC--ccCC-----EEECCCCCHHHHHHHHHHHHcC
Confidence 44 567775 5789999999999999999998765 368888742 3332 3457788889888888887654
Q ss_pred cCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCC
Q 011947 144 AGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL 223 (474)
Q Consensus 144 ~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~ 223 (474)
++.+.+.+. +.++++..++++|++||++++.. +..++.|+|++.+++.+|.+++|+++. +++++++++..
T Consensus 177 ---~g~~~i~~~--~~~~~i~~l~~~L~~~G~~i~~~---~~~~i~I~g~~~~~~~~~~v~~d~~sa--~~~l~~aa~~~ 246 (417)
T PRK12830 177 ---KGRTVIENA--AKEPEIIDVATLLNNMGANIKGA---GTDVIRIEGVDELHGCRHTVIPDRIEA--GTYMILAAACG 246 (417)
T ss_pred ---CCeEEEccC--CcCCcHHHHHHHHHHCCCEEEEc---CCcEEEEccCCcccCcEEeeCCCcHHH--HHHHHHHHHhC
Confidence 445666663 44666777799999999999742 334799998767888899989998775 44454444556
Q ss_pred CceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcce---eecC---CchhhHHHHHHHhccC
Q 011947 224 GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNA---FVEG---DASSASYFVAGAAVTG 297 (474)
Q Consensus 224 g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~---~~~~---D~~~a~~ll~~aa~~~ 297 (474)
++++|+++ .+ .+.+.++++|++||++|+++++ .+++.+.+.++ +.++ .+|+ |+++ +++++++++.
T Consensus 247 ~~~~i~~~---~~-~~~~~~~~~L~~~G~~i~~~~~--~i~v~~~~~l~-~~~i~~~~~p~~~~D~~~--~laa~a~~a~ 317 (417)
T PRK12830 247 GGVTINNV---IP-EHLESFIAKLEEMGVRVEVNED--SIFVEKQGNLK-AVDIKTLPYPGFATDLQQ--PLTPLLLKAN 317 (417)
T ss_pred CCEEEeCC---Ch-hHHHHHHHHHHHCCCEEEEcCC--EEEEEeCCCcc-ceeeccCCCCCChHHHHH--HHHHHHHcCC
Confidence 77887753 22 3678899999999999998765 68887644554 4432 3555 6554 6666677787
Q ss_pred CeEEEe-ccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCC
Q 011947 298 GTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGP 376 (474)
Q Consensus 298 g~~~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~ 376 (474)
|+.++. |+.+.|+ ..+++|++||+++++.+|.++|+|.. +++|.++++ +|||++|+++++|++++|+
T Consensus 318 g~~~i~~~~~~~r~----~~~~~L~~mGa~i~~~~~~l~i~g~~-------~l~g~~v~~-~D~r~am~lav~a~~a~g~ 385 (417)
T PRK12830 318 GRSVVTDTIYEKRF----KHVDELKRMGANIKVEGRSAIITGPS-------KLTGAKVKA-TDLRAGAALVIAGLMAEGV 385 (417)
T ss_pred CcEEEEeccchhhH----HHHHHHHHCCCeEEEECCEEEEECCC-------CccCceecC-CchHHHHHHHHHHHcCCCc
Confidence 777777 6766554 46799999999999999999998742 689999997 7899999999999999999
Q ss_pred eEEecccccccccchhHHHHHHHHHHcCCEEEEeCC
Q 011947 377 TAIRDVASWRVKETERMIAICTELRKLGATVEEGPD 412 (474)
Q Consensus 377 ~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d 412 (474)
++|+|++|++++ ||+|+++|++||+++++.+|
T Consensus 386 ~~I~~~~~~~~~----~~~~~~~L~~lG~~i~~~~~ 417 (417)
T PRK12830 386 TEITNIEHIDRG----YSNIIEKLKALGADIWREED 417 (417)
T ss_pred EEECChhHhhCC----HHHHHHHHHHcCCeEEEccC
Confidence 999999999765 99999999999999986543
No 26
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=1.9e-35 Score=304.33 Aligned_cols=328 Identities=21% Similarity=0.245 Sum_probs=241.9
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCc--ce
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAM--KR 103 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~--~~ 103 (474)
+..+++++||+ ++||++++ +++++++++|+| .+.+||+..++++|++||++|++.++. .|
T Consensus 73 ~~~i~~~~s~~-s~~~l~~l---------------~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~~ 136 (409)
T cd01556 73 EAVLDCGNSGT-TMRLLTGL---------------LALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPP 136 (409)
T ss_pred CceEEcCCchH-HHHHHHHH---------------HHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCCC
Confidence 45789999999 99999964 336688999999 488999999999999999999876542 23
Q ss_pred EEEEecCCCCCccccCCCcceEEecCchh-hhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeC
Q 011947 104 AIVEGCGGLFPLAKQQTGEIELFLGNAGT-AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCIL 181 (474)
Q Consensus 104 l~i~g~~~~~~~~~~s~~~~~i~~g~sg~-t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~ 181 (474)
+ +.+. .+... +..++.+.|.. ...+|++++.+ ++.+++.+. ++.++|++++ +++|++||++++..+
T Consensus 137 i-~~~~--~~~~~-----~~~i~~~~ss~~~~~ll~aa~l~---~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~ 204 (409)
T cd01556 137 L-IGGG--GLKGG-----EVEIPGAVSSQFKSALLLAAPLA---EGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG 204 (409)
T ss_pred e-eecC--CCCCc-----EEEeCCCCccHHHHHHHHHHhcC---CCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecC
Confidence 3 3321 23221 22344432322 22344444333 356777776 6789999777 999999999998742
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 261 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~ 261 (474)
..+++|++++++++.++.+++|+|++ +.++++++++++.++|.+.. +.+++..+++.|++||++++..++ .
T Consensus 205 ---~~~i~I~~~~~l~~~~i~i~~d~s~~--~~l~~~a~~~~~~v~i~~~~---~~~~~~~~~~~L~~~G~~i~~~~~-~ 275 (409)
T cd01556 205 ---YRTITVKGGQKYKGPEYTVEGDASSA--AFFLAAAAITGSEIVIKNVG---LNSGDTGIIDVLKEMGADIEIGNE-D 275 (409)
T ss_pred ---CcEEEECCCCccccCeeEeCCcHHHH--HHHHHHHHhcCCeEEEcCCC---CCChHHHHHHHHHHCCCeEEEcCC-C
Confidence 13699987656888899999999985 44444555666678887643 334789999999999999997662 2
Q ss_pred EEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCeEEEeC
Q 011947 262 RFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTG 338 (474)
Q Consensus 262 ~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~g 338 (474)
.+++.+.+.++ +.++....+...++++++++++++|+++|+|+...+.+ +| ..+.+.|++||++++++++.++|+|
T Consensus 276 ~i~i~~~~~~~-~~~v~~~~~~d~~~~la~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~~~~~~l~i~g 354 (409)
T cd01556 276 TVVVESGGKLK-GIDIDGNDIPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEG 354 (409)
T ss_pred eEEEccCCCcC-ceEeccccCchHHHHHHHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEEEECCEEEEEC
Confidence 68887654444 43432221122244566677788999999998776554 44 6799999999999999999999988
Q ss_pred CCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHc
Q 011947 339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 403 (474)
Q Consensus 339 ~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~l 403 (474)
.+ ..+.+.+++.++|||++|++++++++++++++|+|++++.+. ||+||++|++|
T Consensus 355 ~~------~~~~~~~~~~~~d~r~~~~~~~~~~~~~~~~~i~~~~~v~~~----~p~f~~~l~~l 409 (409)
T cd01556 355 GP------LKGAGVEVYTYGDHRIAMSFAIAGLVAEGGVTIEDPECVAKS----FPNFFEDLESL 409 (409)
T ss_pred CC------CCCCCceecCCCCHHHHHHHHHHHhcCCCCEEEcccCeEecc----CCcHHHHHhhC
Confidence 63 146678889988999999999999999999999999998643 99999999875
No 27
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=100.00 E-value=3.6e-34 Score=294.79 Aligned_cols=321 Identities=18% Similarity=0.188 Sum_probs=240.0
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCc--ce
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAM--KR 103 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~--~~ 103 (474)
...+++++|++ ++||++++++ ...+++.+.| .+..||+..++++|++||+++++.++. .|
T Consensus 74 ~~~~~~g~s~~-~~~~l~a~~~---------------~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~~ 137 (408)
T cd01554 74 QNALNLGNSGT-AIRLISGVLA---------------GADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPP 137 (408)
T ss_pred CceEEccCccH-HHHHHHHHHH---------------cCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcCC
Confidence 34789999999 9999996433 2356788887 457899999999999999999886543 45
Q ss_pred EEEEecCCCCCccccCCCcceEEecCchh-hhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeC
Q 011947 104 AIVEGCGGLFPLAKQQTGEIELFLGNAGT-AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCIL 181 (474)
Q Consensus 104 l~i~g~~~~~~~~~~s~~~~~i~~g~sg~-t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~ 181 (474)
+++.+. +... ...+...-|.. ..-+|++++.+ ++.+++++. . +.+++++ +++|++||++++..+
T Consensus 138 ~~~~~~---~~~~-----~i~~~~~~s~q~~~~ll~aa~~~---~g~~~i~~~--~-~~~~i~~~~~~L~~~G~~i~~~~ 203 (408)
T cd01554 138 LLKGGK---NLGP-----IHYEDPIASAQVKSALMFAALLA---KGETVIIEA--A-KEPTINHTENMLQTFGGHISVQG 203 (408)
T ss_pred EEEecC---CCCC-----eEEeCCcccHHHHHHHHHHHhcC---CCceEEEEe--C-CCCCHHHHHHHHHHCCCEEEecC
Confidence 666432 2222 12222211222 22345554444 345566664 2 4445555 999999999998632
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 261 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~ 261 (474)
...+.|.|.+.+.+.++.+++|+|++ +++++++++++++++|++.+. .+ ++..++++|++||++++..++
T Consensus 204 ---~~~i~I~g~~~~~~~~~~i~~D~~~a--~~~l~~~~l~~~~v~i~~~~~-~~--~~~~~~~~L~~~G~~v~~~~~-- 273 (408)
T cd01554 204 ---TKKIVVQGPQKLTGQKYVVPGDISSA--AFFLVAAAIAPGRLVLQNVGI-NE--TRTGIIDVLRAMGAKIEIGED-- 273 (408)
T ss_pred ---CcEEEECCCcccccceEEeCCChhHH--HHHHHHHhhcCCeEEEecCCC-Cc--hhhHHHHHHHHcCCEEEEeCC--
Confidence 23689988666777789999999997 666777777778899987653 23 578899999999999998765
Q ss_pred EEEEeCCCcccCCccee--e---cCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCe
Q 011947 262 RFFIQGGQKYKSPGNAF--V---EGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENS 333 (474)
Q Consensus 262 ~i~i~~~~~l~~~~~~~--~---~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~ 333 (474)
.+++++. .++ +.++. . ++|.. .+++++|++++|+++|+|+...+++ +| ..+.++|++||++++.+++.
T Consensus 274 ~i~v~~~-~~~-~~~i~~~~~~~~~d~~--p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~~~~~~ 349 (408)
T cd01554 274 TISVESS-DLK-ATEICGALIPRLIDEL--PIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTADG 349 (408)
T ss_pred eEEEecC-Cce-eEEeccccCCCCchHH--HHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEEEECCE
Confidence 5777754 343 33332 1 44543 4778888889999999999887777 56 56899999999999999999
Q ss_pred EEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHc
Q 011947 334 VTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 403 (474)
Q Consensus 334 i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~l 403 (474)
++|+|.. .++|.++++++|||++|+++++|++++|+++|+|++|+++. ||+||++|+++
T Consensus 350 l~i~g~~-------~l~g~~v~~~~D~r~~ma~~i~al~~~~~~~i~~~~~v~~s----~p~f~~~l~~l 408 (408)
T cd01554 350 MIIKGKE-------KLHGARVNTFGDHRIGMMTALAALVADGEVELDRAEAINTS----YPSFFDDLESL 408 (408)
T ss_pred EEEECCC-------CCCCCEEecCCCHHHHHHHHHHHhcCCCCEEEecccceecc----CccHHHHHhhC
Confidence 9999863 57888999999999999999999999999999999998643 99999999875
No 28
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=100.00 E-value=2.1e-34 Score=295.72 Aligned_cols=312 Identities=20% Similarity=0.260 Sum_probs=234.5
Q ss_pred CCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCC
Q 011947 34 NPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 111 (474)
Q Consensus 34 ~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~ 111 (474)
.++++ ++||++++++.. .+..++++| .+.+||++.++++|++||++|++.++. +.|++.+
T Consensus 79 ~~~~t-~~~~~~~l~~~~--------------~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~~~--~~v~~~~- 140 (400)
T cd01555 79 RKMRA-SILVLGPLLARF--------------GEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDGY--VEAKAAG- 140 (400)
T ss_pred hhhhh-HHHHHHHHhcCC--------------CceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeCCE--EEEecCC-
Confidence 44567 888888643311 122555666 678999999999999999999987643 4454322
Q ss_pred CCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcEEEe
Q 011947 112 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 191 (474)
Q Consensus 112 ~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i~I~ 191 (474)
.++.. +..++.+++++++++|++++.+ ++.+.+.+. ..++++..++++|++||++++.. +..++.|.
T Consensus 141 ~~~~~-----~~~i~~~~~~~~~~ll~aa~~~---~g~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~---~~~~i~I~ 207 (400)
T cd01555 141 RLKGA-----RIYLDFPSVGATENIMMAAVLA---EGTTVIENA--AREPEIVDLANFLNKMGAKIEGA---GTDTIRIE 207 (400)
T ss_pred Cccce-----EEECCCCCHHHHHHHHHHHHhC---CCeEEEecc--cCCccHHHHHHHHHHCCCEEEEc---CCceEEEe
Confidence 23322 2356667777888888887554 456677764 33444445699999999999862 22379999
Q ss_pred cCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCC-c
Q 011947 192 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ-K 270 (474)
Q Consensus 192 ~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~-~ 270 (474)
|++.+++.++.+++|++.+ +++++++++++++++|++.. .++...+++.|++||++|+..++ .+++.+.+ +
T Consensus 208 g~~~l~~~~~~~~~D~~~a--~~~l~aa~~~~g~~~i~~~~----~~~~~~~~~~L~~~G~~i~~~~~--~i~i~~~~~~ 279 (400)
T cd01555 208 GVERLHGAEHTVIPDRIEA--GTFLVAAAITGGDITVENVI----PEHLEAVLAKLREMGAKIEIGED--GIRVDGDGGR 279 (400)
T ss_pred CCCCCCCcEEEecCCHHHH--HHHHHHHHHhCCcEEEeCCC----hhHHHHHHHHHHHCCCEEEEcCC--EEEEEcCCCC
Confidence 8656888899999998765 57777777888889998542 24567899999999999998765 78887653 4
Q ss_pred ccCCccee------ecCCchhhHHHHHHHhccCCeEEEec-cCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCC
Q 011947 271 YKSPGNAF------VEGDASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 343 (474)
Q Consensus 271 l~~~~~~~------~~~D~~~a~~ll~~aa~~~g~~~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~ 343 (474)
++ +.++. ++.|+.+ +++++++++.|+.++.| +.+. |..+.++|++||+++++.+|.++|.|..
T Consensus 280 l~-~~~i~~~~~p~~~~D~~~--~l~~~a~~~~g~~~~~~~~~~~----r~~~~~~L~~lGa~i~~~~~~l~i~g~~--- 349 (400)
T cd01555 280 LK-AVDIETAPYPGFPTDLQA--QFMALLTQAEGTSVITETIFEN----RFMHVDELNRMGADIKVEGNTAIIRGVT--- 349 (400)
T ss_pred ce-eeeeecCcCCCCHHHHHH--HHHHHHHhCCCeEEEEeeehhh----hhHHHHHHHHcCCeEEEECCEEEEECCC---
Confidence 54 44443 3347765 78888888888888886 4433 3459999999999999999999998742
Q ss_pred CCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHc
Q 011947 344 YGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 403 (474)
Q Consensus 344 ~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~l 403 (474)
++++.+++++ |||++|+++++|++++|+++|+|+++++++ ||+||++|++|
T Consensus 350 ----~l~~~~v~~~-D~r~ama~a~~a~~~~g~~~i~~~~~v~ks----yp~f~~~l~~l 400 (400)
T cd01555 350 ----KLSGAPVMAT-DLRAGAALVLAGLAAEGETIISNIYHIDRG----YERIEEKLRAL 400 (400)
T ss_pred ----cccCceEecC-chHHHHHHHHHHHcCCCcEEEcChhheeCC----hhhHHHHHhcC
Confidence 5788889998 999999999999999999999999999754 99999999875
No 29
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=100.00 E-value=3.8e-34 Score=295.28 Aligned_cols=297 Identities=21% Similarity=0.246 Sum_probs=225.7
Q ss_pred eeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCC
Q 011947 69 TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGG 146 (474)
Q Consensus 69 ~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~ 146 (474)
+..+.+ .+.+||+++++++|++||+++++.++. +.|++.+ .++.. +..++..+|+++.++|++++.+
T Consensus 109 ~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~~~--~~v~~~~-~l~~~-----~~~l~~~~s~~~~~ll~aa~~~--- 177 (416)
T TIGR01072 109 VVSLPGGCAIGARPVDLHLKGLKALGAEIVIEDGY--VYASAKG-RLVGA-----HIVLDKVSVGATENIIMAAVLA--- 177 (416)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHCCCEEEEECCE--EEEEecC-cceee-----EEecCCCCHHHHHHHHHHHHhC---
Confidence 556654 468999999999999999999887543 4455432 23322 3456667778888888887754
Q ss_pred CcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCce
Q 011947 147 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNV 226 (474)
Q Consensus 147 ~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~ 226 (474)
++.+++++. ..++++..++++|++||++++..+ ..++.|.|++.+++.++.+++|++++ ++++++++++++++
T Consensus 178 ~~~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~~---~~~l~I~g~~~~~~~~~~v~~D~~~a--~~~l~a~~l~~g~~ 250 (416)
T TIGR01072 178 EGTTVIENA--AREPEIVDLCEFLNKMGAKITGAG---SNTITIEGVEKLHGTEHSVIPDRIEA--GTFLVAAAITGGEI 250 (416)
T ss_pred CCcEEEecC--CcCcCHHHHHHHHHHCCCEEEEcC---CCEEEEeCCCcccCcEEEEcCCHHHH--HHHHHHHHHcCCeE
Confidence 345667764 335555566999999999997422 23799998656888899999998874 56777777788889
Q ss_pred EEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCC-CcccCCccee------ecCCchhhHHHHHHHhccCCe
Q 011947 227 EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG-QKYKSPGNAF------VEGDASSASYFVAGAAVTGGT 299 (474)
Q Consensus 227 ~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~-~~l~~~~~~~------~~~D~~~a~~ll~~aa~~~g~ 299 (474)
+|.+.. ..+.+.++++|++||++|+.+++ .+.+.+. ++++ +.++. +++|+.+ +++++++++.|+
T Consensus 251 ~i~~~~----~~~~~~~~~~L~~~G~~v~~~~~--~i~v~~~~~~l~-~~~i~~~~~p~v~~D~~~--~l~~la~~a~g~ 321 (416)
T TIGR01072 251 TIKNVR----PDHLRAVLAKLREIGAEVEVDEN--GIRVDMRQKRLK-AVDIETLPYPGFPTDLQA--QFMALLSQAEGT 321 (416)
T ss_pred EEEecC----chHHHHHHHHHHHCCCEEEEcCC--EEEEEecCCCcc-eeEecCCCCCCChHHHHH--HHHHHHHcCCCe
Confidence 998653 23567899999999999998765 6777753 3454 44443 3346655 467777888899
Q ss_pred EEEec-cCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeE
Q 011947 300 VTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTA 378 (474)
Q Consensus 300 ~~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~ 378 (474)
.+|.| +.++ |..+.++|++||++++..++.++|.|.. .++|.++++ +|||++|+++++|++++|+++
T Consensus 322 ~~i~~~~~~~----r~~~~~~L~~~Ga~i~~~~~~l~i~g~~-------~l~g~~~~~-~D~r~am~~a~aa~~~~g~~~ 389 (416)
T TIGR01072 322 SVITETVFEN----RFMHVDELIRMGANIKLEGNTAVIHGVE-------QLSGAEVMA-TDLRAGAALVLAGLVAEGETI 389 (416)
T ss_pred EEEEeeeccc----HHHHHHHHHHCCCeEEEECCEEEEECCC-------CCcCCeecC-CCHHHHHHHHHHHHcCCCcEE
Confidence 99988 4433 3458999999999999999999998742 578888886 789999999999999999999
Q ss_pred EecccccccccchhHHHHHHHHHHcCCEEE
Q 011947 379 IRDVASWRVKETERMIAICTELRKLGATVE 408 (474)
Q Consensus 379 I~~~~~~r~kesdR~~~~~~~L~~lG~~i~ 408 (474)
|+|++++.+ | ||+|+++|+++|++++
T Consensus 390 I~~~~~~~r--s--~~~~~~~L~~lG~~i~ 415 (416)
T TIGR01072 390 VHNVYHLDR--G--YEDLEEKLRALGAKIE 415 (416)
T ss_pred ECCHhHhhC--C--HhHHHHHHHhccCEEE
Confidence 999999832 2 9999999999999885
No 30
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=8.7e-33 Score=304.18 Aligned_cols=332 Identities=19% Similarity=0.235 Sum_probs=240.0
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC-cceE
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA-MKRA 104 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~-~~~l 104 (474)
+..|++++|+| ++||++++++ ...+++.++| .+..||+.+++++|++||++|+++++ ..|+
T Consensus 386 ~~~i~~~~s~t-s~~ll~a~la---------------~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~~~g~~pi 449 (735)
T PRK14806 386 PGPLYMGNSGT-SMRLLSGLLA---------------AQSFDSVLTGDASLSKRPMERVAKPLREMGAVIETGEEGRPPL 449 (735)
T ss_pred CceeeccCchH-HHHHHHHHHh---------------cCCCeEEEECChhhhhCChHHHHHHHHHCCCEEEcCCCCcCCE
Confidence 34799999999 9999997654 2344677776 55789999999999999999986533 3678
Q ss_pred EEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCC
Q 011947 105 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTN 184 (474)
Q Consensus 105 ~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~ 184 (474)
+|+|.. .++.. +..++...|....-+|++++.+ ++++++.+.. ..|++ .+++|++||++++..+
T Consensus 450 ~i~g~~-~l~g~-----~~~l~~~ssq~~s~ll~aA~~~---~g~~~i~~~~--~~~~~--t~~~L~~~G~~i~~~~--- 513 (735)
T PRK14806 450 SIRGGQ-RLKGI-----HYDLPMASAQVKSCLLLAGLYA---EGETSVTEPA--PTRDH--TERMLRGFGYPVKVEG--- 513 (735)
T ss_pred EEECCC-Cccce-----EEeccCchHHHHHHHHHHHhcc---CCceEEecCc--CCHHH--HHHHHHHCCCEEEecC---
Confidence 998631 12221 1122211222222355555444 3455666532 23333 4899999999998643
Q ss_pred CCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCC-ceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee--
Q 011947 185 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD-- 261 (474)
Q Consensus 185 ~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g-~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~-- 261 (474)
..+.|.|++.+++.+|.+++|+|++ ++|+++++++.+ +++|++.+. . +....+++.|++||+++++.++..
T Consensus 514 -~~i~I~g~~~~~~~~~~i~~D~~~a--~~~~~~a~~~~g~~v~i~~~~~-~--~~~~~~~~~L~~mGa~i~~~~~~~~~ 587 (735)
T PRK14806 514 -NTISVEGGGKLTATDIEVPADISSA--AFFLVAASIAEGSELTLEHVGI-N--PTRTGVIDILKLMGADITLENEREVG 587 (735)
T ss_pred -CEEEECCCccccCCeEEeCCCHHHH--HHHHHHHHhCCCCEEEEccCCC-C--cchHHHHHHHHHcCCEEEEcCccccc
Confidence 2588887666888899999999986 556666666655 588886542 1 223668999999999999866411
Q ss_pred -----EEEEeCCCcccCCccee--ecCCch-hhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEe
Q 011947 262 -----RFFIQGGQKYKSPGNAF--VEGDAS-SASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 262 -----~i~i~~~~~l~~~~~~~--~~~D~~-~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~ 330 (474)
.+++.+. .++ +.++. ..||.. ..+++++++++++|+++|+|+.+.|++ +| ..+.++|++||+++++.
T Consensus 588 g~~~~~i~v~~~-~l~-~~~i~~~~~p~~~D~~p~la~~a~~a~G~s~i~~~~~lr~~EsdR~~~~~~~L~~lG~~i~~~ 665 (735)
T PRK14806 588 GEPVADIRVRGA-RLK-GIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDCEPT 665 (735)
T ss_pred CCcceeEEEecC-Ccc-cEEechHhCcchhhHHHHHHHHHHhCCCcEEEEChHHhccchhHHHHHHHHHHHHcCCEEEEe
Confidence 2556543 344 33321 123221 123677778888999999999988877 55 56889999999999999
Q ss_pred cCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEe
Q 011947 331 ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEG 410 (474)
Q Consensus 331 ~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~ 410 (474)
+|.++|+|. .+++.++++++|||++|+++++++.++|+++|+|++|+.+ | ||+||+.|+++|++++.+
T Consensus 666 ~~~l~i~g~--------~~~~~~v~~~~DhR~~ma~~~~~l~~~~~~~I~~~~~v~k--s--~p~f~~~l~~lg~~i~~~ 733 (735)
T PRK14806 666 PDGIIIEGG--------IFGGGEVESHGDHRIAMSFSVASLRASGPITIHDCANVAT--S--FPNFLELANQVGIRIEVE 733 (735)
T ss_pred CCeEEEECC--------CCCCceeeCCCCHHHHHHHHHHHhcCCCCEEEcccchhhc--c--CcHHHHHHHHhcCeEEee
Confidence 999999885 4677889999999999999999999999999999999864 3 999999999999999775
Q ss_pred C
Q 011947 411 P 411 (474)
Q Consensus 411 ~ 411 (474)
.
T Consensus 734 ~ 734 (735)
T PRK14806 734 Q 734 (735)
T ss_pred c
Confidence 3
No 31
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.3e-32 Score=264.15 Aligned_cols=321 Identities=23% Similarity=0.289 Sum_probs=256.9
Q ss_pred hhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCcccc
Q 011947 39 FPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQ 118 (474)
Q Consensus 39 ~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~ 118 (474)
..||. +++.+.|...+|+-..++ |..|+ ....||++.+++.|++|||+|+.+++ .+..+..++ +...
T Consensus 90 ~kmRA--Si~vlGplLaR~g~a~V~-LPGGC-----aIG~RPvDlHl~gleaLGA~i~~e~g--~i~a~a~~~-L~G~-- 156 (421)
T COG0766 90 RKMRA--SILVLGPLLARFGKAKVS-LPGGC-----AIGARPVDLHLKGLEALGAEIEIEHG--YIEASAPKG-LKGA-- 156 (421)
T ss_pred HHHHh--HHHHHHHHHhhcCceEEC-CCCCc-----cCCCCchhHHHHHHHHcCCEEEEcCC--EEEEEccCC-ccce--
Confidence 35665 667777776665433222 33442 57899999999999999999998754 466666543 4443
Q ss_pred CCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcEEEecCCCCCC
Q 011947 119 QTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPG 198 (474)
Q Consensus 119 s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i~I~~~~~~~~ 198 (474)
...++.-+.|.|..+|+|+.++ +++++|.+..+ ++.++|+..+|++||++|+.. |...++|+|..++++
T Consensus 157 ---~I~ld~~SVGATenimmAA~lA---~G~TvIeNAA~--EPEIvDLa~~Ln~MGA~I~Ga---GT~~I~I~GV~~L~g 225 (421)
T COG0766 157 ---HIYLDKVSVGATENIMMAAVLA---EGTTVIENAAR--EPEIVDLANFLNKMGAKIEGA---GTSTITIEGVEKLHG 225 (421)
T ss_pred ---EEEecCCcccHHHHHHHHHHhc---CCcEEEeeccc--CchHHHHHHHHHHcCCeeEEc---CCCeEEEeccccccc
Confidence 3567777889999999998876 56788888754 889999999999999999863 556799999888999
Q ss_pred eeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCC-cccCCcc-
Q 011947 199 GKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ-KYKSPGN- 276 (474)
Q Consensus 199 ~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~-~l~~~~~- 276 (474)
.+++|-+|.=.+ ..|++||++++|+++|++.. ..+.+.++..|++||++++.+++ .+++...+ .++ +.+
T Consensus 226 ~~h~VipDRIEA--GT~~~aaA~tgg~v~i~~v~----~~hl~~~~~kL~e~G~~~~~~~~--~i~v~~~~~~~k-~v~i 296 (421)
T COG0766 226 AEHSVIPDRIEA--GTFLVAAAITGGDVTIENVR----PEHLEAVLAKLREAGVDIEEGED--GIRVDMEGKRLK-AVDI 296 (421)
T ss_pred eeeEecCchhhH--HHHHHHHHHhCCcEEEeCCC----HHHHHHHHHHHHHhCCeEEEcCC--eEEEeccCCCCC-ccee
Confidence 999999984332 58999999999999999753 24678899999999999999887 67776542 243 333
Q ss_pred -----eeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCCCCcce
Q 011947 277 -----AFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 351 (474)
Q Consensus 277 -----~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g 351 (474)
.-+|.|++. .|+++.+.+.|++.|+. .-++.|..++++|.+||++++.+++...|+|.. +|+|
T Consensus 297 ~T~p~PGFpTDmQa--qf~~L~~~a~G~s~I~E---tifEnRf~hv~EL~RmGA~i~~~g~~a~i~G~~-------~L~g 364 (421)
T COG0766 297 KTLPYPGFPTDMQA--QFMALLTVAEGTSVITE---TIFENRFMHVPELIRMGANIKLEGNTAVIQGVE-------QLSG 364 (421)
T ss_pred ccCCCCCCchhHHH--HHHHHHhhcCCceEEEE---eechhhhhhHHHHHhCCCceEEECCEEEEECCc-------cccC
Confidence 237789977 88888888899998886 334455578999999999999999999999974 7999
Q ss_pred EEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchh-HHHHHHHHHHcCCEEEEe
Q 011947 352 VDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETER-MIAICTELRKLGATVEEG 410 (474)
Q Consensus 352 ~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR-~~~~~~~L~~lG~~i~~~ 410 (474)
..+...|. |..++|.+|++.|+|.|+|++++|+ || |+++.+.|++||++|+..
T Consensus 365 a~V~atDL-RAsaaLVlAgLvAeG~T~I~~v~hl-----dRGYe~~~~KL~~lGA~I~r~ 418 (421)
T COG0766 365 APVMATDL-RASAALVLAGLVAEGETIVNRVYHL-----DRGYERLEEKLRALGAKIERV 418 (421)
T ss_pred Ceeecchh-hhHHHHHHHHHhhCCeEEEeeEEEe-----ecChhHHHHHHHHcCCcEEEe
Confidence 99988855 9999999999999999999999997 56 999999999999999864
No 32
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.96 E-value=2.6e-28 Score=238.82 Aligned_cols=341 Identities=20% Similarity=0.234 Sum_probs=246.5
Q ss_pred EEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCe-eEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--cceE
Q 011947 30 KLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGT-TVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKRA 104 (474)
Q Consensus 30 ~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~-~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~--~~~l 104 (474)
+++++|.|| ++|+|+.++++... -..+. .+|.+ .++.||+..++..|+|+|++|++..+ .+|+
T Consensus 184 eLylgnagt-a~r~lt~~aa~v~~-----------k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~~~p~ 251 (595)
T KOG0692|consen 184 ELYLGNAGT-AMRPLTEFAAAVTA-----------KGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTNCPPV 251 (595)
T ss_pred hhccCccch-hhhhHHHHHHHhhc-----------CCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccCCCCce
Confidence 789999999 99999976553322 12233 56776 56899999999999999999998754 4788
Q ss_pred EEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCCC
Q 011947 105 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGT 183 (474)
Q Consensus 105 ~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~~ 183 (474)
.|...++ ++...++ ..-..+++-++. +||+++.+ .++.++.+-++. +.+.||++| +++|..||++++.....
T Consensus 252 dv~~~~~-~~gg~v~--l~g~Vssqy~~~--~lm~ap~a-~g~vt~~~vdgk-~iS~pyv~mt~~lme~fgvn~~~s~~~ 324 (595)
T KOG0692|consen 252 DVNANGG-LPGGKVK--LSGSVSSQYLTA--LLMCAPLA-LGDVTIEIVDGK-LISVPYVEMTLKLMERFGVNVEHSTSW 324 (595)
T ss_pred eeeccCC-CcCceee--eeeeehhhHHHH--HHHhhhhc-CCceEEEeecCc-cccccchhHHHHHHHHhCcCeEecCCC
Confidence 8875432 3333111 001112222222 45555555 578888887764 569999999 99999999999875432
Q ss_pred CCCcEEEecCCCC-CCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 184 NCPPVRINGKGGL-PGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 184 ~~~~i~I~~~~~~-~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
...+.|.| +++ .++++.|++|.|++ +.|+..|+.+.-++++.+.+. .|.|++..+-++|+.||+++.+..+ .
T Consensus 325 -~~~y~i~g-~~y~~p~~~~ve~dAssa--~yfla~aa~tg~~~tV~~~g~-~Slqgda~Fa~vl~pmgc~v~qt~~--s 397 (595)
T KOG0692|consen 325 -DRFYVIGG-QKYKSPGNAYVEGDASSA--SYFLAGAAITGETVTVEGCGT-TSLQGDAKFAEVLEPMGCKVSQTEN--S 397 (595)
T ss_pred -cceEeccC-cccCCCCCceeecccccc--cccceeeeEecceeeeccccc-eecccccchHhhhccccceeeeecc--c
Confidence 22355555 454 57899999999885 566665667777788888764 5778888899999999999998876 6
Q ss_pred EEEeCCCc----cc--CCcc-eeecCCchhhHHHHHHHhcc-----CCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEE
Q 011947 263 FFIQGGQK----YK--SPGN-AFVEGDASSASYFVAGAAVT-----GGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKV 327 (474)
Q Consensus 263 i~i~~~~~----l~--~~~~-~~~~~D~~~a~~ll~~aa~~-----~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v 327 (474)
+++.|+.. .+ ...+ ..-.+|- +.+..+.|+++ +++++|+++...+.+ +. .++..+|+++|+.+
T Consensus 398 vtv~gp~~ga~~~~~lr~iD~m~~m~d~--~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~ 475 (595)
T KOG0692|consen 398 VTVTGPPRGAFGMRHLRAIDVMNKMPDV--AMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATV 475 (595)
T ss_pred ccccCCCCCcccceehhhhcccccccch--hHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccc
Confidence 77766421 11 1122 2223343 33444555555 688999999988887 43 78999999999999
Q ss_pred EEecCeEEEeCCCCCCCCCCCcceEEEc---CCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHc-
Q 011947 328 TWTENSVTVTGPPRDPYGRKHLRAVDVN---MNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL- 403 (474)
Q Consensus 328 ~~~~~~i~i~g~~~~~~~~~~l~g~~i~---~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~l- 403 (474)
++..|++.|.+.+. +.|+-.+++ +++|||++|+++++|..++-+..|.+..|.++ + ||.+|+.|.+.
T Consensus 476 ~E~~dg~~v~~~~~-----k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~k--t--~p~y~~Vl~~~~ 546 (595)
T KOG0692|consen 476 EEGSDGYCVITPPE-----KKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRK--T--FPDYFQVLERIT 546 (595)
T ss_pred cccCceEEEeCCch-----HhccchhhccccccccccchhhhhHHHhccCCCccccCCCcccc--c--cchHHHHHHHHh
Confidence 99999999988752 257777777 89999999999999999999999999999863 3 99999999854
Q ss_pred CCEE
Q 011947 404 GATV 407 (474)
Q Consensus 404 G~~i 407 (474)
|.++
T Consensus 547 ~~kl 550 (595)
T KOG0692|consen 547 KHKL 550 (595)
T ss_pred hccc
Confidence 4443
No 33
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.94 E-value=9.4e-26 Score=210.52 Aligned_cols=175 Identities=26% Similarity=0.312 Sum_probs=153.9
Q ss_pred cCCchhhHHHHHHHhccCCeEEEeccCCCCc-----cchhHHHHHHHHc-CCEEEEe---cCeEEEeCCCCCCCCCCCcc
Q 011947 280 EGDASSASYFVAGAAVTGGTVTVEGCGTSSL-----QGDVKFAEVLEKM-GAKVTWT---ENSVTVTGPPRDPYGRKHLR 350 (474)
Q Consensus 280 ~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~-----~~d~~~~~~L~~m-Ga~v~~~---~~~i~i~g~~~~~~~~~~l~ 350 (474)
.+|++.+.++++++++++++++|+|+..++. |.|..+++.|++| |++++.. ++.+.+.+. .++
T Consensus 7 ~~d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~--------~l~ 78 (211)
T cd01553 7 KGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPG--------TVR 78 (211)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCC--------Ccc
Confidence 5899999999999999999999999988776 6678999999999 9999876 566777643 477
Q ss_pred eEEEcCCC-----CCcHHHHHHHHHHhCCCCeEEeccccccc----ccchhHHHHHHHHHHcCCEEEEeCC---------
Q 011947 351 AVDVNMNK-----MPDVAMTLAVVALFADGPTAIRDVASWRV----KETERMIAICTELRKLGATVEEGPD--------- 412 (474)
Q Consensus 351 g~~i~~~~-----~~r~~~~lav~a~~a~g~~~I~~~~~~r~----kesdR~~~~~~~L~~lG~~i~~~~d--------- 412 (474)
|.+++... .+|+++.+++++++++|+++|++..++|. ||+||...++.+|++||+++++..+
T Consensus 79 g~~i~~~~~s~g~~~d~~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g~ 158 (211)
T cd01553 79 GGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGG 158 (211)
T ss_pred ceEEEeccCCcccHHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCCC
Confidence 87777653 56899999999999999999999999999 9999999999999999999998888
Q ss_pred ---EEEEeCCCCcccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhc
Q 011947 413 ---YCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSV 471 (474)
Q Consensus 413 ---~l~I~g~~~l~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~l 471 (474)
+++|+|.+++++.++ |++|++++++ ++++|+|++|++|+||+||++|++|
T Consensus 159 g~~~~~i~g~~~l~~~~~------R~~m~~~~~~---~~~~i~~~~~v~~s~p~f~~~l~~l 211 (211)
T cd01553 159 GVVATEVSPVEKLNTAQL------RQLVLPMLLA---SGAVEFTVAHPSCHLLTNFAVLEAL 211 (211)
T ss_pred CccEEEEcCCcccccccH------HHHHHHHHHC---CCeEecCCCccccCCccHHHHhhcC
Confidence 899998766776544 9999999988 7799999999999999999999875
No 34
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.71 E-value=1.7e-16 Score=148.17 Aligned_cols=170 Identities=17% Similarity=0.134 Sum_probs=127.6
Q ss_pred cCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCc-----hhHHHHHHHHHHc-CCEEEEe---CceeEEEEeCCCcccCC
Q 011947 204 SGKLSSQYLTALLMAAPLALGNVEIEIIDKLISV-----PYVEMTLKLMERF-GVFVEHS---DSWDRFFIQGGQKYKSP 274 (474)
Q Consensus 204 ~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~-----~~~~~~~~~L~~~-G~~i~~~---~~~~~i~i~~~~~l~~~ 274 (474)
++|+|+. +.++.+|++++++++|+++.. .+. |++..++++|++| |+++++. ++ .+.+.+. .++ +
T Consensus 7 ~~d~s~a--~~~lala~l~g~~i~I~~i~~-~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~--~i~~~p~-~l~-g 79 (211)
T cd01553 7 KGGGQIL--RSFLVLAAISGGPITVTGIRP-DRAKPGLLRQHLTFLKALEKICGATVEGGELGSD--RISFRPG-TVR-G 79 (211)
T ss_pred CCChHHH--HHHHHHHHHcCCCEEEEEecc-CCCCccccHHHHHHHHHHHHHcCCeEEeeecCCc--eEEEeCC-Ccc-c
Confidence 5788885 566666778888899998764 333 6688999999999 9999875 33 6777653 344 4
Q ss_pred cceee-------cCCchhhHHHHHHHhccCCeEEEeccCCCCc----c-ch--hHHHHHHHHcCCEEEEecC--------
Q 011947 275 GNAFV-------EGDASSASYFVAGAAVTGGTVTVEGCGTSSL----Q-GD--VKFAEVLEKMGAKVTWTEN-------- 332 (474)
Q Consensus 275 ~~~~~-------~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~----~-~d--~~~~~~L~~mGa~v~~~~~-------- 332 (474)
.++.. .+|..+ .+++++++++++++|++....+. + .| .+++++|++||+++++..+
T Consensus 80 ~~i~~~~~s~g~~~d~~~--~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g 157 (211)
T cd01553 80 GDVRFAIGSAGSCTDVLQ--TILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAG 157 (211)
T ss_pred eEEEeccCCcccHHHHHH--HHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCC
Confidence 43322 234433 67777888899999999988766 5 34 6789999999999998887
Q ss_pred ----eEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHc
Q 011947 333 ----SVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL 403 (474)
Q Consensus 333 ----~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~l 403 (474)
.++|.|.+ .+++.++ |++|++++++ ++++|+|++|+.+. ||+||++|++|
T Consensus 158 ~g~~~~~i~g~~-------~l~~~~~------R~~m~~~~~~----~~~~i~~~~~v~~s----~p~f~~~l~~l 211 (211)
T cd01553 158 GGVVATEVSPVE-------KLNTAQL------RQLVLPMLLA----SGAVEFTVAHPSCH----LLTNFAVLEAL 211 (211)
T ss_pred CCccEEEEcCCc-------ccccccH------HHHHHHHHHC----CCeEecCCCccccC----CccHHHHhhcC
Confidence 56666542 4666544 9999999887 67999999998654 99999999864
No 35
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=95.85 E-value=0.48 Score=44.63 Aligned_cols=179 Identities=20% Similarity=0.189 Sum_probs=89.7
Q ss_pred hhccCCCeeEEecCCCCHh-------HHHHHHHHHHc-CCEEEEe-CCcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~r~-------i~~~i~aL~~l-Ga~i~~~-~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|++...+.+|+|.=..|+ -...++++.++ +++++.. .++..+...+. .+... ..+++++.+|+
T Consensus 19 LS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg--~i~~g-----~~~~d~~tags 91 (228)
T PF01137_consen 19 LSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPG--EIRGG-----DYTFDCGTAGS 91 (228)
T ss_dssp HHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE----EE-EC-----EEEEEEETTCB
T ss_pred HHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECC--CccCC-----cEEEecCCCce
Confidence 6778888999998443333 33456677665 4566533 33345665542 23322 35788988877
Q ss_pred hhHHHHHH---HHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCEEEee-CCCCCCc-------EEEecCCCC
Q 011947 133 AMRPLTAA---VTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDCI-LGTNCPP-------VRINGKGGL 196 (474)
Q Consensus 133 t~r~L~a~---~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~v~~~-~~~~~~~-------i~I~~~~~~ 196 (474)
...+|-++ +.....+.+++++|...-. +++++.+ +-+|++||++.+.. ...|+.| +.+++...+
T Consensus 92 i~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~i~krG~~P~GgGeV~~~v~p~~~l 171 (228)
T PF01137_consen 92 ISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELKIIKRGFYPKGGGEVQLRVPPVKPL 171 (228)
T ss_dssp HHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEEEEE--BTTTB-EEEEEEEE-SSS-
T ss_pred eeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEEEEEeccCCCCCeEEEEEEEccccc
Confidence 65444443 2222467788999875543 3344333 66899999976531 0112222 333332222
Q ss_pred CCeeEEEcC--CCCHHHHHHHHHHhhcCCCc-eEEEEccCCCCchhHHHHHHHHHHc-CCEEEE
Q 011947 197 PGGKVKLSG--KLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERF-GVFVEH 256 (474)
Q Consensus 197 ~~~~~~i~g--d~Ss~~~sall~aa~l~~g~-~~I~~~~~~~s~~~~~~~~~~L~~~-G~~i~~ 256 (474)
++-+ + |-..| --+++-.++++++ .+|+. +. -.++....+.++++| |++++.
T Consensus 172 ~~i~----g~vD~~~q--dqll~~mALa~g~vS~i~~-g~--lt~h~~t~l~vi~~fl~v~f~v 226 (228)
T PF01137_consen 172 KPID----GCVDEHLQ--DQLLLFMALAKGDVSRIRV-GP--LTLHTVTNLRVIEQFLGVKFKV 226 (228)
T ss_dssp --EE----CSS-HHHH--HHHHHHHHCCTSSEEEEEE-SC--SSHHHHHHHHHHHHHCS-EEEE
T ss_pred cccc----hhhhhhhH--HHHHHHHHhCCCCceEEEe-cC--CCHHHHHHHHHHHHHcCcEEEE
Confidence 2111 3 22222 2222223467775 47775 32 345788888889885 555544
No 36
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=93.29 E-value=1.3 Score=43.61 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=65.5
Q ss_pred hhccCCCeeEEecCCC-------CHhHHHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLS-------SEDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~-------~r~i~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|+++..+++|.|.=. .+--...+++++.+ +++++..+ +...+...+. .++.. +..+++|.+|+
T Consensus 23 LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg--~i~gG-----~~~~digTAGs 95 (341)
T COG0430 23 LSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPG--KIRGG-----DYRVDIGTAGS 95 (341)
T ss_pred HHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEecc--ceeCc-----eEEEEecCCCc
Confidence 6778888999998322 23333444455443 67776443 2233443332 23333 34677776665
Q ss_pred ---hhHHHHHHHHhcCCCcEEEEeCCCC-cCCCChhhH----HHHHHhCCCEEEe
Q 011947 133 ---AMRPLTAAVTAAGGNLSYILDGVPR-MRERPIGDL----VTGLKQLGADVDC 179 (474)
Q Consensus 133 ---t~r~L~a~~~~~~~~~~i~l~g~~~-l~~rp~~~l----~~~L~~~G~~v~~ 179 (474)
.++.|+.++....++.+++++|... -.++|++.+ +.+|+++|++.+.
T Consensus 96 i~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 96 ITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred eeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 3455555444446789999999744 345555433 7889999997653
No 37
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=90.55 E-value=7.3 Score=39.08 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=64.2
Q ss_pred hhccCCCeeEEecCCCCHh----HHHHH---HHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSSED----IHHML---DALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~r~----i~~~i---~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|+++..+++|+|.=..|+ -..++ +++.++ +++++..+ +...++..+. .+... ...++++.+|+
T Consensus 23 LS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg--~i~~g-----~~~~d~~tags 95 (343)
T PRK04204 23 LSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPG--PIRGG-----DYRFDIGTAGS 95 (343)
T ss_pred HHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECC--CccCC-----eEEEecCCCcc
Confidence 6678888899997332222 23344 444443 45665332 2245555543 23222 35788887776
Q ss_pred hh---HHHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCEEEe
Q 011947 133 AM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 179 (474)
Q Consensus 133 t~---r~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~v~~ 179 (474)
.. +.++++++...++.+++++|...-. ++|++.+ +-+|++||++++.
T Consensus 96 i~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 96 ITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred hhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 44 3445444444567899999975433 4454433 6678999997653
No 38
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=90.16 E-value=4.5 Score=39.89 Aligned_cols=91 Identities=20% Similarity=0.327 Sum_probs=54.7
Q ss_pred hhhHHHHHHh----CCCEEEeeCCCCCCcEEEecCCCCCCeeEEEc----CCCCHHHHHHHHHHhhcCCCceEEEEcc--
Q 011947 163 IGDLVTGLKQ----LGADVDCILGTNCPPVRINGKGGLPGGKVKLS----GKLSSQYLTALLMAAPLALGNVEIEIID-- 232 (474)
Q Consensus 163 ~~~l~~~L~~----~G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~----gd~Ss~~~sall~aa~l~~g~~~I~~~~-- 232 (474)
..+|+.+++. .+++++..+ -|...+...++ ++++++|.++ |+++- ++-++|.++++++++++|+..+
T Consensus 46 ~~QHltaVra~~~i~~a~v~G~e-~GS~~l~F~Pg-~i~gG~~~~digTAGsi~L-vlQtlLp~~~fa~~~~~i~v~GGT 122 (341)
T COG0430 46 KRQHLTAVRAAAEICNAEVEGAE-LGSTELVFRPG-KIRGGDYRVDIGTAGSITL-VLQTLLPLLLFADGPSRITVTGGT 122 (341)
T ss_pred HHHHHHHHHHHHHhcCCeEeeee-ccceEEEEecc-ceeCceEEEEecCCCceee-eHHHHHHHhhcCCCCeEEEEECcc
Confidence 4555555543 456776543 23334555554 7888887765 23322 3347788888899988887543
Q ss_pred CC---CCchhH-HHHHHHHHHcCCEEEE
Q 011947 233 KL---ISVPYV-EMTLKLMERFGVFVEH 256 (474)
Q Consensus 233 ~~---~s~~~~-~~~~~~L~~~G~~i~~ 256 (474)
+. ...+|+ ..++.+|++||+..+.
T Consensus 123 dv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 123 DVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred CCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 11 122343 4578999999987654
No 39
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=89.33 E-value=9.1 Score=38.13 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=66.6
Q ss_pred HHHHHHhccCCeEEEeccCCCCccc---h--hHHHHHHHHc-CCEEEEec---CeEEEeCCCCCCCCCCCcceE--EEcC
Q 011947 288 YFVAGAAVTGGTVTVEGCGTSSLQG---D--VKFAEVLEKM-GAKVTWTE---NSVTVTGPPRDPYGRKHLRAV--DVNM 356 (474)
Q Consensus 288 ~ll~~aa~~~g~~~i~g~~~~~~~~---d--~~~~~~L~~m-Ga~v~~~~---~~i~i~g~~~~~~~~~~l~g~--~i~~ 356 (474)
+-++++++++.+++|.|+..+|-+. + ...++.+.++ ++.++..+ ..++..+. .+.|. ++++
T Consensus 15 ~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg--------~i~gG~~~~d~ 86 (326)
T cd00874 15 TALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPG--------KIKGGDYEFDI 86 (326)
T ss_pred HHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECC--------CccCCcEEEeC
Confidence 3466777889999999998766552 2 4556666665 66654332 33555554 34443 3444
Q ss_pred CCCC---cHHHHHHHHHHhCCCCeEE--ecccccccccc-hhHH-HHHHHHHHcCCEEEE
Q 011947 357 NKMP---DVAMTLAVVALFADGPTAI--RDVASWRVKET-ERMI-AICTELRKLGATVEE 409 (474)
Q Consensus 357 ~~~~---r~~~~lav~a~~a~g~~~I--~~~~~~r~kes-dR~~-~~~~~L~~lG~~i~~ 409 (474)
...- =+.-++..++++++++++| ++..++...-| |-+. -++..|+++|++++.
T Consensus 87 ~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 87 GTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 3221 1234566778899998765 45555443333 2111 345678999987764
No 40
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=88.75 E-value=16 Score=36.39 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=64.3
Q ss_pred hhccCCCeeEEecCCCCHh-------HHHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~r~-------i~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|++...+++|+|.=..|+ -...++++.++ +++++..+ +...++..+. .+... +..++++.+|+
T Consensus 21 LS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg--~i~gG-----~~~~d~gtagS 93 (326)
T TIGR03399 21 LSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPG--KIRGG-----DYRFDIGTAGS 93 (326)
T ss_pred HHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECC--CccCC-----eEEEeCCCChh
Confidence 6778888999997433332 22344444444 45654332 2245555543 22222 45788887776
Q ss_pred hh---HHHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCEEEe
Q 011947 133 AM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 179 (474)
Q Consensus 133 t~---r~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~v~~ 179 (474)
.. +.++++++..+.+.+++++|...-. ++|++.+ +-+|++||++++.
T Consensus 94 i~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 94 VTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred hHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 44 4445444444677899999975433 3444333 5678999997653
No 41
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=88.59 E-value=10 Score=37.74 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=64.2
Q ss_pred hhccCCCeeEEecCCCCHh-------HHHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~r~-------i~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|++...+++|+|.=..|+ -...++++.++ +++++..+ +...++..+. .+... ...++++.+|+
T Consensus 19 LS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg--~i~gG-----~~~~d~~tags 91 (326)
T cd00874 19 LSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPG--KIKGG-----DYEFDIGTAGS 91 (326)
T ss_pred HHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECC--CccCC-----cEEEeCCCCcc
Confidence 6668888899987332222 33455555554 45554322 2245665543 23222 35788887776
Q ss_pred hh---HHHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCEEEe
Q 011947 133 AM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 179 (474)
Q Consensus 133 t~---r~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~v~~ 179 (474)
.. +.+++++...+.+.+++++|...-. ++|++.+ +-+|++||++++.
T Consensus 92 i~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 92 ITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 44 3444444434567899999975443 3444333 5677999997653
No 42
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=88.50 E-value=12 Score=37.28 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=66.7
Q ss_pred HHHHHHhccCCeEEEeccCCCCccc---h--hHHHHHHHHc-CCEEEEe---cCeEEEeCCCCCCCCCCCcceE--EEcC
Q 011947 288 YFVAGAAVTGGTVTVEGCGTSSLQG---D--VKFAEVLEKM-GAKVTWT---ENSVTVTGPPRDPYGRKHLRAV--DVNM 356 (474)
Q Consensus 288 ~ll~~aa~~~g~~~i~g~~~~~~~~---d--~~~~~~L~~m-Ga~v~~~---~~~i~i~g~~~~~~~~~~l~g~--~i~~ 356 (474)
+-++++++++.+++|+|+..+|-+. + ...++.+.++ +++++.. ...++..+. .++|. ++++
T Consensus 17 ~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg--------~i~gG~~~~d~ 88 (326)
T TIGR03399 17 TALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPG--------KIRGGDYRFDI 88 (326)
T ss_pred HHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECC--------CccCCeEEEeC
Confidence 3566778889999999998776542 2 3455666665 5655432 233555544 33443 3444
Q ss_pred CCC---CcHHHHHHHHHHhCCCCeEE--ecccccccccc-hhHH-HHHHHHHHcCCEEEE
Q 011947 357 NKM---PDVAMTLAVVALFADGPTAI--RDVASWRVKET-ERMI-AICTELRKLGATVEE 409 (474)
Q Consensus 357 ~~~---~r~~~~lav~a~~a~g~~~I--~~~~~~r~kes-dR~~-~~~~~L~~lG~~i~~ 409 (474)
... .=+.-++..++++++++++| ++..++...-| |=+. -++..|++||++++.
T Consensus 89 gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 89 GTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred CCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 322 12345667778899998765 45555443333 2111 345678999997764
No 43
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=87.83 E-value=6.6 Score=39.33 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=64.5
Q ss_pred hhccCCCeeEEecCCCC-------HhHHHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~-------r~i~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|+++..+++|+|.=.. +--...++++.++ +++++..+ +...++..+. .+... +..+++|.+|+
T Consensus 19 LS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg--~i~gG-----~~~~d~gtagS 91 (338)
T cd00295 19 LAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPG--NIIGG-----DVRFACGSAGG 91 (338)
T ss_pred HHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC--cccCC-----eEEEeCCCCcc
Confidence 66788888999873222 2223445555554 56654332 2245555543 23322 45788887776
Q ss_pred hh---HHHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCEEE
Q 011947 133 AM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVD 178 (474)
Q Consensus 133 t~---r~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~v~ 178 (474)
.. +.++++++..+++.++.++|...-. ++|++.+ +-+|++||++++
T Consensus 92 i~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~ 145 (338)
T cd00295 92 CGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGD 145 (338)
T ss_pred hHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 43 4455544444677899999975432 4555433 677899999765
No 44
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=87.56 E-value=16 Score=37.01 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=65.1
Q ss_pred hhccCCCeeEEecCCCC-------HhHHHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~-------r~i~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|+++..+++|+|.=.. +--...++++.++ ++++...+ +...++..+. .+... +..+++|.+|+
T Consensus 15 LS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg--~i~gG-----~~~~d~gtagS 87 (360)
T TIGR03400 15 LSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPG--LITGG-----SVTHECPTTRG 87 (360)
T ss_pred HHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC--cccCC-----eEEEeCCCCcc
Confidence 67788888999973222 2233455566665 56665332 2345555542 22222 35788887776
Q ss_pred hh---HHHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCC---EEEe
Q 011947 133 AM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGA---DVDC 179 (474)
Q Consensus 133 t~---r~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~---~v~~ 179 (474)
.. +.++++++..+.+.+++++|..... ++|++.+ +-+|+.||+ +++.
T Consensus 88 itl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 88 IGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 43 4444444433567899999975433 4555442 667899999 6653
No 45
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=84.04 E-value=31 Score=34.95 Aligned_cols=120 Identities=22% Similarity=0.245 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHhcCCCcEEE-EeCCCCcCCCC-h-hhH---HHHHHhC-CCEEEeeCCCCCCcEEEecCCCCCCeeEEEc
Q 011947 132 TAMRPLTAAVTAAGGNLSYI-LDGVPRMRERP-I-GDL---VTGLKQL-GADVDCILGTNCPPVRINGKGGLPGGKVKLS 204 (474)
Q Consensus 132 ~t~r~L~a~~~~~~~~~~i~-l~g~~~l~~rp-~-~~l---~~~L~~~-G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~ 204 (474)
+.+|.-+++.+..+++.+|. |... + +.| . .++ ++++.++ ++++...+ .+...+...|+ .+.+++|+.+
T Consensus 7 QilR~alaLS~itgkpv~I~nIR~~-R--~~PGL~~qhl~~l~l~~~i~~a~~~g~~-~gst~l~F~Pg-~i~gG~~~~d 81 (360)
T TIGR03400 7 RNFRQRLVLSTLSGKPVRITKIRSD-D--ENPGLRDYEVSFLRLLEKVTNGSKIEIS-YTGTTVIYKPG-LITGGSVTHE 81 (360)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccC-C--CCCCcHHHHHHHHHHHHHhcCCeEeeee-cCceEEEEECC-cccCCeEEEe
Confidence 45665555444434555554 2221 1 223 2 222 5555554 66665432 23345777775 6778888775
Q ss_pred CC--CCH-HHHHHHHHHhhcCCCceEEEEcc--CC---CCchhH-HHHHHHHHHcCC---EEEE
Q 011947 205 GK--LSS-QYLTALLMAAPLALGNVEIEIID--KL---ISVPYV-EMTLKLMERFGV---FVEH 256 (474)
Q Consensus 205 gd--~Ss-~~~sall~aa~l~~g~~~I~~~~--~~---~s~~~~-~~~~~~L~~~G~---~i~~ 256 (474)
-. -|- -++-++|..+++++++++|+..+ +. .+..|. ..++.+|++||+ +++.
T Consensus 82 ~gtagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 82 CPTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred CCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 31 121 12235566667788776665332 21 122333 347788999999 6653
No 46
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=83.44 E-value=41 Score=33.80 Aligned_cols=121 Identities=20% Similarity=0.276 Sum_probs=63.9
Q ss_pred hhhhHHHHHHHHhcCCCcEEE-EeCCCCcCCCC-h-hhHH---HHHHh-CCCEEEeeCCCCCCcEEEecCCCCCCeeEEE
Q 011947 131 GTAMRPLTAAVTAAGGNLSYI-LDGVPRMRERP-I-GDLV---TGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKL 203 (474)
Q Consensus 131 g~t~r~L~a~~~~~~~~~~i~-l~g~~~l~~rp-~-~~l~---~~L~~-~G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i 203 (474)
|+.+|.-+++.+..+.+.++. |... + +.| . .+|+ +++.+ .+++++..+ .+...+...|+ .+.+++|++
T Consensus 14 gQilR~alaLS~ltgkpv~I~nIR~~-r--~~PGL~~qhl~~l~l~~~i~~~~v~g~~-~gst~l~f~Pg-~i~~g~~~~ 88 (343)
T PRK04204 14 GQILRTALALSAITGKPFRITNIRAN-R--PNPGLLRQHLTAVKAAAEICNAEVEGAE-LGSQELVFIPG-PIRGGDYRF 88 (343)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeccC-C--CCCCchHHHHHHHHHHHHHcCCeEEeee-cCceEEEEECC-CccCCeEEE
Confidence 455665555444434555554 3322 1 223 2 3334 44444 345665432 23335777775 678888887
Q ss_pred cCC--CCHH-HHHHHHHHhhcCCCceEEEEcc--CC---CCchhH-HHHHHHHHHcCCEEEE
Q 011947 204 SGK--LSSQ-YLTALLMAAPLALGNVEIEIID--KL---ISVPYV-EMTLKLMERFGVFVEH 256 (474)
Q Consensus 204 ~gd--~Ss~-~~sall~aa~l~~g~~~I~~~~--~~---~s~~~~-~~~~~~L~~~G~~i~~ 256 (474)
+-. -|-. +.-++|..+++++++++|+..+ +. .+..|. ..++.+|++||++++.
T Consensus 89 d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 89 DIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred ecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 632 2222 2235556666777776665432 21 123343 3577899999997654
No 47
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=82.79 E-value=24 Score=35.41 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=62.5
Q ss_pred hhccCCCeeEEecCCCCH-------hHHHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~r-------~i~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|+++..+++|+|.=..| --...++++.++ +++++..+ ++..+...+. .+... ...++++.+|+
T Consensus 19 LS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG--~i~gG-----~~~~d~gtagS 91 (341)
T cd00875 19 LATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPG--LITGG-----VLNHDCPVSRG 91 (341)
T ss_pred HHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECC--CccCC-----cEEEeCCCCcc
Confidence 677888899999733222 222455556555 56654322 2345555542 23322 45788888776
Q ss_pred hhH---HHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCE
Q 011947 133 AMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGAD 176 (474)
Q Consensus 133 t~r---~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~ 176 (474)
... .++.++.....+.+++++|..... ++|++.+ +-+|++||+.
T Consensus 92 I~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 92 IGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 543 334333333567899999875433 4555443 5568999994
No 48
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=79.50 E-value=56 Score=30.76 Aligned_cols=185 Identities=22% Similarity=0.211 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCCceEEEEccCCCCchhH----HHHHHHHHH-cCCEEEE-eCceeEEEEeCCCcccCCcceee-cCCchh
Q 011947 213 TALLMAAPLALGNVEIEIIDKLISVPYV----EMTLKLMER-FGVFVEH-SDSWDRFFIQGGQKYKSPGNAFV-EGDASS 285 (474)
Q Consensus 213 sall~aa~l~~g~~~I~~~~~~~s~~~~----~~~~~~L~~-~G~~i~~-~~~~~~i~i~~~~~l~~~~~~~~-~~D~~~ 285 (474)
.++.++ ++++.+++|.++.....+|+. ...++++.+ .++.++. +.+...+...++ .++ +.++.. ++...+
T Consensus 15 ~~laLS-~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg-~i~-~g~~~~d~~tags 91 (228)
T PF01137_consen 15 TALALS-ALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPG-EIR-GGDYTFDCGTAGS 91 (228)
T ss_dssp HHHHHH-HHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE---EE--ECEEEEEEETTCB
T ss_pred HHHHHH-hccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECC-Ccc-CCcEEEecCCCce
Confidence 455554 578889999986432233332 345677766 4555553 222235655553 343 333332 222222
Q ss_pred hHHHH-H---HHhccCC--eEEEeccCCCCcc--ch---hHHHHHHHHcCCEEEEecCeEEEeCC-CC----C---CCCC
Q 011947 286 ASYFV-A---GAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAKVTWTENSVTVTGP-PR----D---PYGR 346 (474)
Q Consensus 286 a~~ll-~---~aa~~~g--~~~i~g~~~~~~~--~d---~~~~~~L~~mGa~v~~~~~~i~i~g~-~~----~---~~~~ 346 (474)
.++++ + .++++++ +++++|.-+...- -| ..++..|++||++.+.. +.=+|- |. + ....
T Consensus 92 i~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~---i~krG~~P~GgGeV~~~v~p~ 168 (228)
T PF01137_consen 92 ISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELK---IIKRGFYPKGGGEVQLRVPPV 168 (228)
T ss_dssp HHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEE---EEE--BTTTB-EEEEEEEE-S
T ss_pred eeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEE---EEEeccCCCCCeEEEEEEEcc
Confidence 33322 2 2455665 4566665433332 23 45678899999997742 111111 00 0 0000
Q ss_pred CCcceEEEcCCCCCcHHHHHHHHHHhCCCC-eEEecccccccccchhHHHHHHHHHH-cCCEEEEe
Q 011947 347 KHLRAVDVNMNKMPDVAMTLAVVALFADGP-TAIRDVASWRVKETERMIAICTELRK-LGATVEEG 410 (474)
Q Consensus 347 ~~l~g~~i~~~~~~r~~~~lav~a~~a~g~-~~I~~~~~~r~kesdR~~~~~~~L~~-lG~~i~~~ 410 (474)
..+++++ ..-|.-++..+.+..+.++|. ++|.-.. + |+........+++ +|++++++
T Consensus 169 ~~l~~i~--g~vD~~~qdqll~~mALa~g~vS~i~~g~-l----t~h~~t~l~vi~~fl~v~f~v~ 227 (228)
T PF01137_consen 169 KPLKPID--GCVDEHLQDQLLLFMALAKGDVSRIRVGP-L----TLHTVTNLRVIEQFLGVKFKVE 227 (228)
T ss_dssp SS---EE--CSS-HHHHHHHHHHHHCCTSSEEEEEESC-S----SHHHHHHHHHHHHHCS-EEEE-
T ss_pred ccccccc--hhhhhhhHHHHHHHHHhCCCCceEEEecC-C----CHHHHHHHHHHHHHcCcEEEEe
Confidence 1233322 333445566666666778885 5666322 2 2223455555554 47777654
No 49
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=77.77 E-value=57 Score=32.69 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=63.5
Q ss_pred HHHHH-HHHHHhhcCCCceEEEEccCCCCchhH----HHHHHHHHH-cCCEEEEe-CceeEEEEeCCCcccCCcceeecC
Q 011947 209 SQYLT-ALLMAAPLALGNVEIEIIDKLISVPYV----EMTLKLMER-FGVFVEHS-DSWDRFFIQGGQKYKSPGNAFVEG 281 (474)
Q Consensus 209 s~~~s-all~aa~l~~g~~~I~~~~~~~s~~~~----~~~~~~L~~-~G~~i~~~-~~~~~i~i~~~~~l~~~~~~~~~~ 281 (474)
.|..- ++.+ +++++.+++|+++.....+|+. ...++++.+ .+++++.. .....++..++ .+. +.++.+.-
T Consensus 10 gQilR~alaL-S~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg-~i~-gG~~~~d~ 86 (338)
T cd00295 10 CEILRHALSL-AMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPG-NII-GGDVRFAC 86 (338)
T ss_pred hHHHHHHHHH-HHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC-ccc-CCeEEEeC
Confidence 34443 4544 5688899999987532233332 245566665 45655532 11135666554 343 44444322
Q ss_pred Cc-hhhHH----HHHHHhccCC--eEEEeccCCCCcc--ch---hHHHHHHHHcCCEEEE
Q 011947 282 DA-SSASY----FVAGAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAKVTW 329 (474)
Q Consensus 282 D~-~~a~~----ll~~aa~~~g--~~~i~g~~~~~~~--~d---~~~~~~L~~mGa~v~~ 329 (474)
.. .+..+ ++.+++++++ +++++|.-+.... -| ..++..|++||++++.
T Consensus 87 gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~~ 146 (338)
T cd00295 87 GSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDE 146 (338)
T ss_pred CCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 21 12222 3344666665 5666665443332 34 6788899999998654
No 50
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=76.15 E-value=86 Score=31.47 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=61.2
Q ss_pred HHHH-HHHHHhhcCCCceEEEEccCCCCchhH----HHHHHHHHHc-CCEEEE-eCceeEEEEeCCCcccCCcceeec-C
Q 011947 210 QYLT-ALLMAAPLALGNVEIEIIDKLISVPYV----EMTLKLMERF-GVFVEH-SDSWDRFFIQGGQKYKSPGNAFVE-G 281 (474)
Q Consensus 210 ~~~s-all~aa~l~~g~~~I~~~~~~~s~~~~----~~~~~~L~~~-G~~i~~-~~~~~~i~i~~~~~l~~~~~~~~~-~ 281 (474)
|+.- ++.+ +++++.+++|+++.....+|+. ...++++.++ ++.++. +.....+...++ .+. +.++.+. +
T Consensus 11 QilR~alaL-S~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG-~i~-gG~~~~d~g 87 (341)
T cd00875 11 NFFRQRLVL-ATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPG-LIT-GGVLNHDCP 87 (341)
T ss_pred HHHHHHHHH-HHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECC-Ccc-CCcEEEeCC
Confidence 4443 4444 5688889999987532233332 3466777765 565543 222235666654 343 3444321 2
Q ss_pred CchhhHH----HHHHHhccCC--eEEEeccCCCCcc--ch---hHHHHHHHHcCCE
Q 011947 282 DASSASY----FVAGAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAK 326 (474)
Q Consensus 282 D~~~a~~----ll~~aa~~~g--~~~i~g~~~~~~~--~d---~~~~~~L~~mGa~ 326 (474)
...+..+ ++.+++++++ +++++|.-+.... -| ..++..|++||+.
T Consensus 88 tagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 88 VSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1112222 3444556665 5666666443332 34 5678899999994
No 51
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=52.38 E-value=2.1e+02 Score=28.49 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=57.7
Q ss_pred hhccCCCeeEEec------CCCCHhHH-HHHHHHHHc--CCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCc--
Q 011947 62 LSLSFQGTTVVDN------LLSSEDIH-HMLDALKKL--GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNA-- 130 (474)
Q Consensus 62 ~a~l~~g~~~i~~------~l~~r~i~-~~i~aL~~l--Ga~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~s-- 130 (474)
++.|+..+.++.. .|.-||.+ ..++.|+.+ |-.+++...+..+..++ + .+... ....+|..+
T Consensus 21 ls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~P-g-~i~GG-----~~~~dc~t~~~ 93 (361)
T KOG3980|consen 21 LSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTP-G-LILGG-----TVTHDCPTARS 93 (361)
T ss_pred HHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcC-c-eeeCC-----ceEEeccCccc
Confidence 4556666666554 34445554 567778875 66666654333343332 2 12211 123344311
Q ss_pred -hhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-----HHHHHhCCCEEE
Q 011947 131 -GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-----VTGLKQLGADVD 178 (474)
Q Consensus 131 -g~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-----~~~L~~~G~~v~ 178 (474)
|-.+..|+++......+.++++.|..+-...|-+|+ +..|++||+.-+
T Consensus 94 I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 94 IGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred eeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 122334554433335789999999755333333222 667899999653
No 52
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=50.26 E-value=97 Score=24.97 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=44.3
Q ss_pred cccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCCcccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccc
Q 011947 381 DVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKT 460 (474)
Q Consensus 381 ~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~l~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s 460 (474)
++..++ ..++|...+-.+|+++|+++... ....|---+ -+.++. +|+..++.|+++-.+.|.++-. .-+.
T Consensus 21 Gaktlk-e~p~R~~av~~~les~G~k~~~~---y~T~GeYD~-V~i~Ea-pDda~~~~~~l~l~s~GnvRt~----TL~A 90 (104)
T COG4274 21 GAKTLK-ETPKRAAAVRALLESMGGKVKEQ---YWTLGEYDV-VAIVEA-PDDAVATRFSLALASRGNVRTV----TLRA 90 (104)
T ss_pred HHHHHh-hCHHHHHHHHHHHHHcCcEEEEE---EEeeccccE-EEEEec-CCHHHHHHHHHHHHhcCCeEEE----eecc
Confidence 344454 33689999999999999998752 222232111 123566 4666666665443334444322 1244
Q ss_pred cc--cHHHHHHhc
Q 011947 461 FP--DYFDVLDSV 471 (474)
Q Consensus 461 ~p--~f~~~l~~l 471 (474)
|| .+.+.++++
T Consensus 91 fp~~~~~~~lkk~ 103 (104)
T COG4274 91 FPVDAMLEILKKM 103 (104)
T ss_pred CCHHHHHHHHhhc
Confidence 55 355555554
No 53
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=46.53 E-value=1.1e+02 Score=24.16 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=36.6
Q ss_pred ccchhHHHHHHHHHHcCCEEEEeCCEEEEeCCCCccc-ceeecCccHHHHHHHHHHHcCCCCeEE
Q 011947 388 KETERMIAICTELRKLGATVEEGPDYCVITPPEKLKV-AAIDTYDDHRMAMAFSLAACADVPVTI 451 (474)
Q Consensus 388 kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g~~~l~~-~~v~~~~Dhr~ama~~laal~~~~i~I 451 (474)
+.+||...+-+.++++|++++- .....|. ..- ..++. +|...+++++++-.+.|.+..
T Consensus 17 ~~~~R~~a~~~~~e~~Gg~l~~---~y~t~G~--yD~v~i~ea-PD~~~a~~~~l~i~~~G~v~~ 75 (91)
T PF08734_consen 17 DSPDRAEAVRALIEALGGKLKS---FYWTLGE--YDFVVIVEA-PDDETAAAASLAIRSSGNVRT 75 (91)
T ss_pred hcHHHHHHHHHHHHHcCCEEEE---EEEecCC--CCEEEEEEc-CCHHHHHHHHHHHHcCCceEE
Confidence 3468999999999999999873 2233443 111 23666 577767676655445555544
No 54
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=40.04 E-value=3.9e+02 Score=26.66 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEccCCCCc----hhHHHHHHHHHHc--CCEEEEeCceeEEEEeCCCcccCCcce-eecC
Q 011947 209 SQYLTALLMAAPLALGNVEIEIIDKLISV----PYVEMTLKLMERF--GVFVEHSDSWDRFFIQGGQKYKSPGNA-FVEG 281 (474)
Q Consensus 209 s~~~sall~aa~l~~g~~~I~~~~~~~s~----~~~~~~~~~L~~~--G~~i~~~~~~~~i~i~~~~~l~~~~~~-~~~~ 281 (474)
.|+..-.+.++.+.+.+++|......... ++-..++++|++. |-.++++.....+..+++ .+. +..+ .+++
T Consensus 12 ~q~lr~~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg-~i~-GG~~~~dc~ 89 (361)
T KOG3980|consen 12 GQALRLRLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPG-LIL-GGTVTHDCP 89 (361)
T ss_pred hHHHHHHHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCc-eee-CCceEEecc
Confidence 44444555556677788888765432233 3445688888874 445555432224444432 333 2222 2222
Q ss_pred CchhhH----HHHHHHhccCC--eEEEeccCCCCc--cch---hHHHHHHHHcCCEEE
Q 011947 282 DASSAS----YFVAGAAVTGG--TVTVEGCGTSSL--QGD---VKFAEVLEKMGAKVT 328 (474)
Q Consensus 282 D~~~a~----~ll~~aa~~~g--~~~i~g~~~~~~--~~d---~~~~~~L~~mGa~v~ 328 (474)
-.-+.. .++.++.+++. +++++|+-.... .-| ..++..|++||++-+
T Consensus 90 t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 90 TARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred CccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 111111 35666777765 566677754322 234 678899999999754
No 55
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=35.91 E-value=1.5e+02 Score=29.68 Aligned_cols=108 Identities=25% Similarity=0.231 Sum_probs=60.9
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|+.|...++|||+|-- ..|+ ...++.-+.++|++....+..... ..+-+-|.. +. +.+ -.+
T Consensus 30 l~g~~~~~qi~A~L~Alr-~Kge----------t~eEi~G~~~am~~~~~~~~~p~~-~~vDi~GTG-GD-g~~---T~N 92 (338)
T COG0547 30 LSGEASPAQIGAFLTALR-IKGE----------TPEEIAGFAEAMREHAPKLPVPAA-DPVDIVGTG-GD-GAN---TIN 92 (338)
T ss_pred hcCCCCHHHHHHHHHHHH-HhcC----------CHHHHHHHHHHHHHhcccCCCCCC-CCCCeecCC-CC-CCC---ccc
Confidence 456677766778887642 3333 334678888999986555544332 012232321 11 111 224
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
+|+++-+++++ ++-++.-+|-...+-+ ..-.|.|+.||+++....
T Consensus 93 iSt~aA~v~A~--~Gv~VaKHGnrs~sSk--sGsaDvleaLGv~l~~~~ 137 (338)
T COG0547 93 ISTAAAIVAAA--AGVPVAKHGNRSVSSK--SGSADVLEALGVNLELSP 137 (338)
T ss_pred chHHHHHHHHh--CCCcEEeECCCCCCCC--CcHHHHHHHcCCCCCCCH
Confidence 55544444433 3667777775433333 355899999999998743
No 56
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=33.19 E-value=41 Score=28.02 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHcCCEEEEeCC
Q 011947 79 EDIHHMLDALKKLGLNVEEDFA 100 (474)
Q Consensus 79 r~i~~~i~aL~~lGa~i~~~~~ 100 (474)
++...+.+.|+++|+.++....
T Consensus 65 ~~~~~v~~~l~~lG~~~E~~~~ 86 (117)
T PF14085_consen 65 DDIEAVREELEALGCTVEGFSE 86 (117)
T ss_pred hhHHHHHHHHHHcCCeEEccCC
Confidence 7899999999999999987653
No 57
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=33.12 E-value=1.9e+02 Score=30.96 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=60.7
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..|...++|||+|- ...|+ +..++..+.+.|++...++..... ..+-+.|. +.+-.-..+
T Consensus 221 l~g~~~~~q~~AfL~al-r~kge----------t~~El~g~~~a~~~~~~~~~~~~~-~~~D~~gt-----ggdg~~t~n 283 (534)
T PRK14607 221 TDGNATDAQIAGFLTAL-RMKGE----------TADELAGFASVMREKSRHIPAPSP-RTVDTCGT-----GGDGFGTFN 283 (534)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCC-CceEEccC-----CCCCCCccc
Confidence 56777777777888764 33443 334678888999988876654221 12333332 111112223
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEe
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 330 (474)
+++++-++++ .++-++..+|.....-+ ..-.|.|+.+|+++...
T Consensus 284 ist~~a~v~A--~~G~~V~kHG~r~~ss~--~Gsadvle~lGv~~~~~ 327 (534)
T PRK14607 284 ISTTSAFVVA--AAGVPVAKHGNRAVSSK--SGSADVLEALGVKLEMT 327 (534)
T ss_pred cHHHHHHHHH--hCCCcEEEECCCCCCCC--ccHHHHHHHcCCCCCCC
Confidence 4443333333 23677888875433323 34569999999998643
No 58
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=30.53 E-value=1.8e+02 Score=29.05 Aligned_cols=106 Identities=27% Similarity=0.323 Sum_probs=56.2
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..|...++|||+|. ...|+ +..++..+++.|++...++...+. .+-+.|. +.+-.....
T Consensus 29 l~g~~~~~q~~AfL~al-r~kge----------t~~El~g~~~a~~~~~~~~~~~~~--~iDi~gt-----ggdg~~t~n 90 (339)
T PRK00188 29 MSGEATPAQIAAFLTAL-RVKGE----------TVDEIAGAARAMREHAVPVPDPDD--AVDIVGT-----GGDGANTFN 90 (339)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCC--CCcccCC-----CCCCCCccc
Confidence 45666766677888764 33443 334677788888887765533211 2212221 111001122
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEe
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 330 (474)
+++++-++ ++-++-++..+|.....-+ ..-.|.|+.||+++...
T Consensus 91 is~~~a~v--lA~~G~~V~kHG~~~~~s~--~GsadvLe~lGi~~~~~ 134 (339)
T PRK00188 91 ISTAAAFV--AAAAGVKVAKHGNRSVSSK--SGSADVLEALGVNLDLS 134 (339)
T ss_pred hHHHHHHH--HHhCCCEEEEECCCCCCCC--cCHHHHHHHcCCCCCCC
Confidence 33322222 2224678888875332222 34669999999998654
No 59
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=29.62 E-value=2.1e+02 Score=28.46 Aligned_cols=108 Identities=29% Similarity=0.262 Sum_probs=57.6
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..+...++|||++- ...|+ +..++..+.+.|++.+..+.+......+-+.|. +.+-.-...
T Consensus 23 l~g~~~~~q~~AfL~al-r~kge----------t~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gt-----ggdg~~t~n 86 (330)
T TIGR01245 23 MSGEASPAQIAAILAAL-RIKGE----------TPEEITGFAKAMREHAVKVPGRPVEDLVDIVGT-----GGDGANTIN 86 (330)
T ss_pred HcCCCCHHHHHHHHHHH-HHcCC----------CHHHHHHHHHHHHHhCCCCCCccCCCcccccCC-----CCCCCCccc
Confidence 34566666677888764 33443 234677888999988866654211011212221 111111223
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEe
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 330 (474)
+++++-+++ +-++-++..+|.....-+ ..-.|.|+.+|+++...
T Consensus 87 ist~~a~vl--A~~G~~V~kHG~r~~~s~--~Gs~d~le~LGi~~~~s 130 (330)
T TIGR01245 87 ISTASAFVA--AAAGVKVAKHGNRSVSSK--SGSADVLEALGVNLDLG 130 (330)
T ss_pred cHHHHHHHH--HhCCCEEEEeCCCCCCCC--ccHHHHHHHcCCCCCCC
Confidence 344322322 224778888875332222 24579999999998654
No 60
>PRK07394 hypothetical protein; Provisional
Probab=29.41 E-value=2e+02 Score=28.81 Aligned_cols=88 Identities=26% Similarity=0.264 Sum_probs=51.5
Q ss_pred CCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCC
Q 011947 77 SSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 156 (474)
Q Consensus 77 ~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~ 156 (474)
..+.+.-.++++++.-.++....+..++.+-|.|+ ... ...++.. .+.+++++ ..+.++...|..
T Consensus 57 T~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~Gtgg--DG~-----~~t~NiS-------t~aA~v~A-~~Gv~V~kHGnr 121 (342)
T PRK07394 57 TPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPY--DGR-----SRTAPIY-------PLTALILA-AAGQPVVLHGGD 121 (342)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCC--CCC-----CCCcccH-------HHHHHHHH-HCCCeEEEECCC
Confidence 36778889999998876664321112445666653 211 0134331 23333333 246888889976
Q ss_pred CcCCCChhhHHHHHHhCCCEEEe
Q 011947 157 RMRERPIGDLVTGLKQLGADVDC 179 (474)
Q Consensus 157 ~l~~rp~~~l~~~L~~~G~~v~~ 179 (474)
...++-=+..-|+|+++|+++..
T Consensus 122 ~~ssk~GvtsaDvLe~LGv~~~~ 144 (342)
T PRK07394 122 RMPTKYGVPLVELWQGLGVDLTG 144 (342)
T ss_pred CCCCCCCchHHHHHHHCCCCCCC
Confidence 65544323358999999998864
No 61
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=28.84 E-value=1.9e+02 Score=31.09 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=60.1
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..|...++|||+|- ...|+ +..++..+.+.|++.+.++...+. ..+-+.|.. +. +. ...+
T Consensus 226 l~g~~~~~qi~AfL~al-r~kge----------t~eEl~g~~~a~~~~~~~~~~~~~-~~iD~~gtG-gd-g~---~t~n 288 (531)
T PRK09522 226 VRGELKPEQLAAALVSM-KIRGE----------HPNEIAGAATALLENAAPFPRPDY-LFADIVGTG-GD-GS---NSIN 288 (531)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCCCCCCCC-CcccccCCC-CC-CC---CCcc
Confidence 55777776677888764 34443 334677788889987766543221 122233321 11 11 1223
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
+++++-+++++ ++-++...|-...+-+ ..-.|.|+++|+++....
T Consensus 289 ist~aa~v~A~--~Gv~V~kHG~r~~ss~--~GsadvlealGi~~~~~~ 333 (531)
T PRK09522 289 ISTASAFVAAA--CGLKVAKHGNRSVSSK--SGSSDLLAAFGINLDMNA 333 (531)
T ss_pred cHHHHHHHHHh--CCCcEEEeCCCCCCCC--ccHHHHHHHcCCCCCCCH
Confidence 55543333332 4677877774322222 456899999999986553
No 62
>PHA02627 hypothetical protein; Provisional
Probab=28.63 E-value=40 Score=24.26 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.3
Q ss_pred CCCCHhHHHHHHHHHHcCCEEEEeCC
Q 011947 75 LLSSEDIHHMLDALKKLGLNVEEDFA 100 (474)
Q Consensus 75 ~l~~r~i~~~i~aL~~lGa~i~~~~~ 100 (474)
-...+++..+++.|..||+.|..+++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PHA02627 31 EIDEDDITELLNILTELGCDVDFDED 56 (73)
T ss_pred eeCHHHHHHHHHHHHHhCCCcccccc
Confidence 35789999999999999999987654
No 63
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=27.79 E-value=2.1e+02 Score=23.70 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=33.9
Q ss_pred hhH-HHHHHhCCCEEEeeCCC-CCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHH
Q 011947 164 GDL-VTGLKQLGADVDCILGT-NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLM 217 (474)
Q Consensus 164 ~~l-~~~L~~~G~~v~~~~~~-~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~ 217 (474)
.-+ +.+.+.+|++++..+.. .+.++.|.+...-.-..+.|+.+.|.-|++-++.
T Consensus 60 ~vlklkLYrsLGI~~e~~~~~~~~~~~lI~~~~~g~v~~l~ld~~~S~~f~snyiW 115 (118)
T PF08286_consen 60 NVLKLKLYRSLGIELEYDEDNGENNKVLIRNDNKGDVHVLNLDPKLSDYFISNYIW 115 (118)
T ss_dssp CHHHHHHHHHCCEEEEC-----CCTCCEEECCCCSSEEEEEE-TTTTHHHHHHHHH
T ss_pred HHHHHHHHHhCcEEEEecccccccceEEEEcCCCCCceEEeeCCCCChhHHHHHHh
Confidence 345 89999999888763221 3446778875221235678888888878876653
No 64
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=26.52 E-value=47 Score=23.88 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.4
Q ss_pred CCCCHhHHHHHHHHHHcCCEEEEeCC
Q 011947 75 LLSSEDIHHMLDALKKLGLNVEEDFA 100 (474)
Q Consensus 75 ~l~~r~i~~~i~aL~~lGa~i~~~~~ 100 (474)
-...+++..+++.|..||+.|..+++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PF06076_consen 31 EIDEDDIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred eeCHHHHHHHHHHHHHhCCCcccccc
Confidence 35789999999999999999987664
No 65
>PRK07394 hypothetical protein; Provisional
Probab=25.34 E-value=3.9e+02 Score=26.80 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=58.2
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..+...+++||++- ...|+ +..++..+++.|++.-.++....+...+.+-|.. +. +. .--.+
T Consensus 35 l~g~~~~~q~aAfL~al-r~KGE----------T~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~Gtg-gD-G~--~~t~N 99 (342)
T PRK07394 35 LLGEATPAQIGAFLIAH-RIKRP----------TPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMP-YD-GR--SRTAP 99 (342)
T ss_pred HcCCCCHHHHHHHHHHH-HhhCC----------CHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCC-CC-CC--CCCcc
Confidence 44556665567887754 44444 2345777888888866555321110012222221 11 11 01224
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEE
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 329 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~ 329 (474)
+++++-+++++ ++-++..+|-...+-++...-.|.|+.+|+++..
T Consensus 100 iSt~aA~v~A~--~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~ 144 (342)
T PRK07394 100 IYPLTALILAA--AGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTG 144 (342)
T ss_pred cHHHHHHHHHH--CCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCC
Confidence 55544333333 3678888875433323212267999999999876
No 66
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=24.83 E-value=1.9e+02 Score=28.79 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCC
Q 011947 76 LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 155 (474)
Q Consensus 76 l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~ 155 (474)
...+.+..+.+++++.+..+.+......+-+.|.|+. .. .+++.. .+.+.+++ ..+.++...|.
T Consensus 44 et~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggd--g~------~t~nis-------t~~a~vlA-~~G~~V~kHG~ 107 (330)
T TIGR01245 44 ETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGD--GA------NTINIS-------TASAFVAA-AAGVKVAKHGN 107 (330)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCC--CC------CccccH-------HHHHHHHH-hCCCEEEEeCC
Confidence 3467888999999999876654211123434565432 11 133321 23443333 24688989998
Q ss_pred CCcCCCChhhHHHHHHhCCCEEEe
Q 011947 156 PRMRERPIGDLVTGLKQLGADVDC 179 (474)
Q Consensus 156 ~~l~~rp~~~l~~~L~~~G~~v~~ 179 (474)
..+.++-. ..|+|+.+|+++..
T Consensus 108 r~~~s~~G--s~d~le~LGi~~~~ 129 (330)
T TIGR01245 108 RSVSSKSG--SADVLEALGVNLDL 129 (330)
T ss_pred CCCCCCcc--HHHHHHHcCCCCCC
Confidence 76665533 37999999998853
No 67
>PHA02780 hypothetical protein; Provisional
Probab=24.09 E-value=55 Score=23.55 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.3
Q ss_pred CCCCHhHHHHHHHHHHcCCEEEEeCC
Q 011947 75 LLSSEDIHHMLDALKKLGLNVEEDFA 100 (474)
Q Consensus 75 ~l~~r~i~~~i~aL~~lGa~i~~~~~ 100 (474)
-...+++..+++.|..||+.|..+++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PHA02780 31 EIDEDEIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred eechHHHHHHHHHHHHhCCCcccccc
Confidence 35788999999999999999987654
No 68
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=23.26 E-value=1.1e+02 Score=25.56 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=36.9
Q ss_pred EEEeccCCCCcc-chhHHHHHHHHcCCEEEEecCeEEEeCCCCCCCCCCCcceEEEcCCC-CCcHHHHHHHHHHhC
Q 011947 300 VTVEGCGTSSLQ-GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK-MPDVAMTLAVVALFA 373 (474)
Q Consensus 300 ~~i~g~~~~~~~-~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~-~~r~~~~lav~a~~a 373 (474)
+.|.|......+ .+..+...|+++|.+.- +..++|. +.|..+.-.+ -.|+++++++++...
T Consensus 12 ~~ivGl~~~av~esr~Rv~~al~~~g~~~p--~~~i~VN-----------lap~~l~k~g~~~DLaIA~ailsa~~ 74 (121)
T PF13541_consen 12 FNIVGLPDTAVKESRERVRSALKNSGFPFP--NQDITVN-----------LAPADLKKEGPAFDLAIAIAILSAFG 74 (121)
T ss_pred eEEecCchHHHHHHHHHHHHHHHhcCCCCC--cceeeeE-----------EEeCCEEEeeeeehHHHHHHHHHhCC
Confidence 556666655555 44778888999888854 4445543 2222222221 128999999987644
No 69
>PRK08136 glycosyl transferase family protein; Provisional
Probab=22.47 E-value=5.1e+02 Score=25.73 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=58.5
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCcee-EEEEeCCCcccCCcceeecC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD-RFFIQGGQKYKSPGNAFVEG 281 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~-~i~i~~~~~l~~~~~~~~~~ 281 (474)
+.|..+..-+++||++- ...|+ +..++.-+.+.|++.-.++....+.. .+-+.|- +.+-. -.
T Consensus 33 l~g~~~~~qi~AfL~al-r~KgE----------T~eElaG~~~a~~~~~~~~~~~~~~~~~iD~~gt-----gGd~~-t~ 95 (317)
T PRK08136 33 LDGRVPDLELGAILIAL-RIKGE----------SEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIPSY-----NGARK-QA 95 (317)
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCCCCceEEeCCC-----CCCCC-Cc
Confidence 45666766667888753 44443 33457778888887665553221100 1222221 11111 23
Q ss_pred CchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEe
Q 011947 282 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 282 D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 330 (474)
++++++-+++++ ++-++..+|-..-+-+ ..-.|.|+++|+++...
T Consensus 96 nist~aA~vlA~--~G~~V~kHGnr~vssk--~gsadvleaLGi~~~~~ 140 (317)
T PRK08136 96 NLTPLLALLLAR--EGVPVLVHGVSEDPTR--VTSAEIFEALGIPPTLH 140 (317)
T ss_pred ChHHHHHHHHHH--CCCeEEEECCCCCCCc--ccHHHHHHHcCCCCCCC
Confidence 455543333332 4678888875433322 46689999999998654
No 70
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=21.83 E-value=1.2e+02 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=20.9
Q ss_pred hHHHHHHHHcCCEEEE-ecCeEEEeCC
Q 011947 314 VKFAEVLEKMGAKVTW-TENSVTVTGP 339 (474)
Q Consensus 314 ~~~~~~L~~mGa~v~~-~~~~i~i~g~ 339 (474)
..+.+.|++||.+++. .++.+.+..+
T Consensus 22 ~~i~~~L~~lg~~~~~~~~~~~~v~vP 48 (70)
T PF03484_consen 22 EEIIKILKRLGFKVEKIDGDTLEVTVP 48 (70)
T ss_dssp HHHHHHHHHTT-EEEE-CTTEEEEEEE
T ss_pred HHHHHHHHHCCCEEEECCCCEEEEEcC
Confidence 4788999999999999 6778877654
No 71
>PLN02641 anthranilate phosphoribosyltransferase
Probab=21.62 E-value=3.6e+02 Score=27.07 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCCchhh
Q 011947 207 LSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSA 286 (474)
Q Consensus 207 ~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D~~~a 286 (474)
.+...+++||++- ...|+ +.+++..+.+.|++.+.++..... .+-+.|. +.+-....+++++
T Consensus 33 ~~~~qigAfL~al-r~kge----------t~eEiag~~~a~~~~~~~~~~~~~--~~D~~gt-----GGdg~~t~nist~ 94 (343)
T PLN02641 33 ADEAQISAFLVLL-RAKGE----------TFEEIAGLARAMIKRARKVDGLVD--AVDIVGT-----GGDGANTVNISTG 94 (343)
T ss_pred CCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCCCCCCCC--CCceeCC-----CCCCCCccccHHH
Confidence 4554567777754 34443 234677888889988765542111 2222221 1111112234544
Q ss_pred HHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 287 SYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 287 ~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
+-+++++ ++-++..+|-...+-+ ..-.|.|+.+|++++...
T Consensus 95 aa~v~A~--~G~~V~kHGnr~~ss~--~GsaDvLeaLGi~~~~~~ 135 (343)
T PLN02641 95 SSILAAA--CGAKVAKQGNRSSSSA--CGSADVLEALGVAIDLGP 135 (343)
T ss_pred HHHHHHh--CCCeEEEeCCCCCCCc--cCHHHHHHHcCCCCCCCH
Confidence 3333332 3667777764322222 456899999999986543
Done!