Query 011947
Match_columns 474
No_of_seqs 294 out of 2373
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o0b_A 3-phosphoshikimate 1-ca 100.0 1.2E-75 4E-80 603.4 47.6 409 24-474 10-426 (450)
2 3nvs_A 3-phosphoshikimate 1-ca 100.0 4.5E-75 1.5E-79 600.1 47.7 422 19-472 28-449 (450)
3 3rmt_A 3-phosphoshikimate 1-ca 100.0 7.5E-74 2.6E-78 587.8 37.3 411 19-474 7-433 (455)
4 3slh_A 3-phosphoshikimate 1-ca 100.0 4.6E-72 1.6E-76 575.3 40.7 410 20-474 7-431 (441)
5 1rf6_A 5-enolpyruvylshikimate- 100.0 1.1E-67 3.8E-72 542.8 43.8 406 24-473 7-426 (427)
6 2pqc_A 3-phosphoshikimate 1-ca 100.0 1.1E-63 3.7E-68 516.4 43.3 410 22-474 8-441 (445)
7 4fqd_A NIKO protein; beta/alph 100.0 1.1E-61 3.8E-66 502.7 28.4 410 19-474 16-451 (479)
8 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 6.9E-60 2.4E-64 484.3 39.5 397 24-474 9-412 (419)
9 3r38_A UDP-N-acetylglucosamine 100.0 1.6E-58 5.4E-63 476.9 39.7 397 19-474 28-436 (454)
10 2yvw_A UDP-N-acetylglucosamine 100.0 8.4E-59 2.9E-63 476.5 35.8 396 22-474 16-418 (425)
11 3slh_A 3-phosphoshikimate 1-ca 100.0 3.2E-44 1.1E-48 368.6 26.8 330 25-409 86-434 (441)
12 3nvs_A 3-phosphoshikimate 1-ca 100.0 8.9E-44 3E-48 366.7 23.4 325 30-404 113-449 (450)
13 3rmt_A 3-phosphoshikimate 1-ca 100.0 2.9E-44 1E-48 368.4 19.3 332 26-411 86-438 (455)
14 2o0b_A 3-phosphoshikimate 1-ca 100.0 2.1E-42 7.3E-47 355.9 27.3 331 27-406 86-426 (450)
15 1rf6_A 5-enolpyruvylshikimate- 100.0 2E-39 6.8E-44 332.8 28.0 323 28-405 83-426 (427)
16 4fqd_A NIKO protein; beta/alph 100.0 2.6E-39 8.9E-44 335.1 21.2 351 33-429 102-472 (479)
17 2pqc_A 3-phosphoshikimate 1-ca 100.0 3.4E-37 1.2E-41 318.2 29.1 334 28-409 86-444 (445)
18 3r38_A UDP-N-acetylglucosamine 100.0 3.1E-37 1.1E-41 318.1 26.2 315 37-411 113-441 (454)
19 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 1.6E-36 5.5E-41 310.9 26.1 319 33-410 87-416 (419)
20 2yvw_A UDP-N-acetylglucosamine 100.0 1.8E-36 6.1E-41 310.7 21.7 319 32-411 95-423 (425)
21 3tut_A RNA 3'-terminal phospha 91.6 5.4 0.00018 38.8 15.5 123 35-179 33-172 (358)
22 3tut_A RNA 3'-terminal phospha 91.2 2.6 8.9E-05 41.0 12.9 114 288-409 41-172 (358)
23 3pqv_A RCL1 protein; RTC-like, 86.1 5.1 0.00017 39.2 11.0 110 62-178 23-150 (365)
24 3pqv_A RCL1 protein; RTC-like, 73.0 17 0.00057 35.5 9.7 114 288-409 19-151 (365)
25 4hkm_A Anthranilate phosphorib 59.6 11 0.00036 36.6 5.3 109 203-331 32-140 (346)
26 2elc_A Trp D, anthranilate pho 49.6 38 0.0013 32.4 7.4 108 203-331 26-133 (329)
27 1khd_A Anthranilate phosphorib 44.2 35 0.0012 32.9 6.2 108 203-330 39-146 (345)
28 3r88_A Anthranilate phosphorib 42.7 38 0.0013 33.1 6.3 109 203-331 52-161 (377)
29 1vqu_A Anthranilate phosphorib 40.6 56 0.0019 31.8 7.1 107 203-330 53-169 (374)
30 4hkm_A Anthranilate phosphorib 29.4 38 0.0013 32.6 3.8 86 76-179 53-138 (346)
31 1o17_A Anthranilate PRT, anthr 27.0 58 0.002 31.4 4.5 105 203-331 29-133 (345)
32 1kkl_H Phosphocarrier protein 24.7 2.4E+02 0.0081 21.6 7.1 81 147-249 15-95 (100)
33 2elc_A Trp D, anthranilate pho 24.5 1.1E+02 0.0037 29.1 6.0 85 76-179 47-131 (329)
34 2jug_A TUBC protein; docking d 21.6 1.2E+02 0.0043 21.8 4.5 28 393-420 7-34 (78)
35 2tpt_A Thymidine phosphorylase 20.2 1.1E+02 0.0039 30.4 5.3 105 203-331 30-139 (440)
No 1
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=1.2e-75 Score=603.41 Aligned_cols=409 Identities=29% Similarity=0.422 Sum_probs=368.2
Q ss_pred ccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCC----CeeEEecCCCCHhHHHHHHHHHHcCCEEEEeC
Q 011947 24 SNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQ----GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 99 (474)
Q Consensus 24 ~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~----g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~ 99 (474)
+..++++|.++.||++++|+|+ +++|++ |+++|+|.+.+||+..++++|++||++|++++
T Consensus 10 ~~~l~G~v~vpgsKs~s~R~l~----------------~aaLa~~~~~g~~~i~~~l~~~D~~~~~~~L~~lGa~i~~~~ 73 (450)
T 2o0b_A 10 PTPVRATVTVPGSKSQTNRALV----------------LAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGVG 73 (450)
T ss_dssp SSCCEEEECCCBCHHHHHHHHH----------------HHHHHHHTTCCCEEEETCCCSHHHHHHHHHHHHTTCEEECSS
T ss_pred CCCeEEEEEccCcHHHHHHHHH----------------HHHhcCCCCCCeEEEecCCCchHHHHHHHHHHHcCCEEEEeC
Confidence 4567899999999999999998 777889 99999999999999999999999999998643
Q ss_pred CcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEe
Q 011947 100 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDC 179 (474)
Q Consensus 100 ~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~ 179 (474)
.+++|+|.++.+.. ..+++++||+++|||.++++. .+..+.++|++++.+||+..++++|++||++|+.
T Consensus 74 --~~l~I~g~~~~l~~-------~~i~~g~sgts~R~l~~lla~--~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~ 142 (450)
T 2o0b_A 74 --SELTVSGRIEPGPG-------ARVDCGLAGTVLRFVPPLAAL--GSVPVTFDGDQQARGRPIAPLLDALRELGVAVDG 142 (450)
T ss_dssp --SCEEEESCCCCCTT-------CEEECTTCHHHHHHHHHHHTT--SSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEEC
T ss_pred --CEEEEECCCCCcCc-------eeeeeccchhHHHHHHHHHhc--CCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEEc
Confidence 38999986432332 378999999999999998764 5778999999999999999999999999999963
Q ss_pred eCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccC-CCCchhHHHHHHHHHHcCCEEEEeC
Q 011947 180 ILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDK-LISVPYVEMTLKLMERFGVFVEHSD 258 (474)
Q Consensus 180 ~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~-~~s~~~~~~~~~~L~~~G~~i~~~~ 258 (474)
+ +.|++|++++++++.+|++++|+|+||++++||||+++.++++|++.+. ..++||+++++++|++||++|+..+
T Consensus 143 ---~-~~p~~i~g~~~l~g~~i~i~~d~Ssq~~salllAA~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~ 218 (450)
T 2o0b_A 143 ---T-GLPFRVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDST 218 (450)
T ss_dssp ---S-SSSEEEECCSCCCCEEEEECCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCS
T ss_pred ---C-ceeEEEEecCCCcCcEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecC
Confidence 2 4689999844699999999999999999999999999988899987643 4688999999999999999998654
Q ss_pred ceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeC
Q 011947 259 SWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG 338 (474)
Q Consensus 259 ~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g 338 (474)
. +.|+|++ ++|+ +.++.+++|+++++||++++++++|+++|+|+..+++|+|..++++|++||++|++.+|.++|++
T Consensus 219 ~-~~i~I~g-~~l~-g~~~~v~~D~s~A~~~laaaa~~~g~v~i~~v~~~~~q~~~~i~~~L~~mGa~i~~~~d~i~v~~ 295 (450)
T 2o0b_A 219 P-NRWQVRP-GPVA-ARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRG 295 (450)
T ss_dssp T-TEEEECC-CCCC-CCCEECCBCHHHHHHHHHHHHHHTCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEEETTEEEEEC
T ss_pred C-cEEEEEC-CCCc-CceEEcCCCHHHHHHHHHHHHhcCCeEEECCCCcccccchHHHHHHHHHcCCeEEEcCCEEEEec
Confidence 2 3789987 5776 77899999999999999999999999999999999999887899999999999999999999987
Q ss_pred CCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCC--CCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEE
Q 011947 339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD--GPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVI 416 (474)
Q Consensus 339 ~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~--g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I 416 (474)
.. +++|++++++++||++|+|++++++++ |+++|+|++++|+|||||++.|+++|++||+++++.+|+++|
T Consensus 296 ~~-------~l~g~~i~~~~~~D~~p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~i~~~~d~~~I 368 (450)
T 2o0b_A 296 PT-------GYDGFDVDLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVI 368 (450)
T ss_dssp CS-------CCCCCEEECTTCGGGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEE
T ss_pred CC-------CcceeEEeCCCCHHHHHHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCeEEEECCEEEE
Confidence 52 589999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred eCCCCcccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhc-ccC
Q 011947 417 TPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSV-TKR 474 (474)
Q Consensus 417 ~g~~~l~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~l-g~~ 474 (474)
+| .+++|+.|++|+|||+||||++||++.++++|+|++||+|+||+||++|++| |++
T Consensus 369 ~g-~~l~g~~v~s~~DhR~ama~~iagl~~~~~~I~~~~~v~ksyp~f~~~l~~l~Ga~ 426 (450)
T 2o0b_A 369 TA-TPLRPGIWRAYADHRMAMAGAIIGLRVAGVEVDDIAATTKTLPEFPRLWAEMVGPG 426 (450)
T ss_dssp EC-CCCCCEEECCTTCHHHHHHHHHHHTTSTTEEESCGGGGGGTCTTHHHHHHHHHC--
T ss_pred EC-cCCcCCeEECCcHHHHHHHHHHHHHcCCCEEEcccChhhCchHHHHHHHHhccCCC
Confidence 97 5689999999999999999999999877899999999999999999999999 974
No 2
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=100.00 E-value=4.5e-75 Score=600.15 Aligned_cols=422 Identities=54% Similarity=0.857 Sum_probs=380.3
Q ss_pred hhhccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEe
Q 011947 19 LAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 98 (474)
Q Consensus 19 ~~~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~ 98 (474)
+...+...++++|.++.||++++|+|+ +++|++|+++|+|++.++|+..++++|++||++|+++
T Consensus 28 ~~i~~~~~l~G~v~vpgsKs~s~r~l~----------------~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~ 91 (450)
T 3nvs_A 28 LTLQPIELISGEVNLPGSKSVSNRALL----------------LAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLS 91 (450)
T ss_dssp EEECCCCCBCEEEECCBCHHHHHHHHH----------------HHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEcCCCcceEEEEeCCcHHHHHHHHH----------------HHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEc
Confidence 344556678999999999999999998 8889999999999999999999999999999999986
Q ss_pred CCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEE
Q 011947 99 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVD 178 (474)
Q Consensus 99 ~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~ 178 (474)
++..+++|+|.++.+..+. ...+++||||+++|||+++++. +++++.++|++++.+||+.++++.|++||++++
T Consensus 92 ~~~~~~~i~g~~~~~~~~~----~~~l~~g~sgt~~R~l~~~la~--~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~ 165 (450)
T 3nvs_A 92 ADKTTCEVEGLGQAFHTTQ----PLELFLGNAGTAMRPLAAALCL--GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIE 165 (450)
T ss_dssp TTSSCEEEECCSSCCBCSS----CEEEECTTCHHHHHHHHHHTTS--SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEE
T ss_pred CCccEEEEeCCCCCcCCCC----CceEEccCccchHHHHHHHHhc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEE
Confidence 5322699999763333221 1368899999999999997654 578999999999999999999999999999998
Q ss_pred eeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC
Q 011947 179 CILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD 258 (474)
Q Consensus 179 ~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~ 258 (474)
..++++++|++|+|+ +++++++++++++||||++++|+||++++|+++|++.++..++||+++++++|++||++|++.+
T Consensus 166 ~~~~~g~~p~~I~g~-~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g 244 (450)
T 3nvs_A 166 YLEQENFPPLRIQGT-GLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD 244 (450)
T ss_dssp ESSSTTSSCEEEECC-CCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEET
T ss_pred EEcCCCeEeEEEEcC-CcCceEEEeCCCCcHHHHHHHHHHHHHCCCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecC
Confidence 754457889999986 6899999999999999999999999999999999987655688999999999999999999876
Q ss_pred ceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeC
Q 011947 259 SWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG 338 (474)
Q Consensus 259 ~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g 338 (474)
. ..++|++.+.++.+.++.+++|+++++||++++++++|+++|+|+..+++|+|..+++.|++||++|++.++.+++.+
T Consensus 245 ~-~~i~I~g~~~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~D~~i~~~L~~mGa~i~~~~~~i~v~~ 323 (450)
T 3nvs_A 245 Y-QEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARR 323 (450)
T ss_dssp T-TEEEECTTCCCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEEEEC
T ss_pred C-cEEEEcCCccccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccchHHHHHHHHHcCCeEEEeCCEEEEec
Confidence 3 379999876676345889999999999999999999999999999999999998999999999999999999999886
Q ss_pred CCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEeC
Q 011947 339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITP 418 (474)
Q Consensus 339 ~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~g 418 (474)
. +++|++++..++||++|+++++|++|+|+++|+|++++|+|||||+.+++++|++||+++++.+|+++|+|
T Consensus 324 ~--------~L~g~~i~~~~~PD~~~~l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~~~~d~i~I~G 395 (450)
T 3nvs_A 324 G--------ELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITP 395 (450)
T ss_dssp C--------CCBCCEEECTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEEC
T ss_pred C--------CcCcEEeecCCCcCHHHHHHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEEEcCCEEEEeC
Confidence 4 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeecCccHHHHHHHHHHHcCCCCeEEeCCcccccccccHHHHHHhcc
Q 011947 419 PEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVT 472 (474)
Q Consensus 419 ~~~l~~~~v~~~~Dhr~ama~~laal~~~~i~I~~~~~v~~s~p~f~~~l~~lg 472 (474)
+++++|+++++++|||+||+|++||++.++++|+|++||+||||+||++|++||
T Consensus 396 ~~~L~g~~v~~~~DhR~ama~aiaal~a~~~~I~~~~~v~ksyp~f~~~l~~lg 449 (450)
T 3nvs_A 396 PTKLIHAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCTSKTFPDYFDKFAQLS 449 (450)
T ss_dssp CSSCCCCEECCTTCHHHHHHHHGGGGSSSCEEEESGGGGGGTCTTHHHHHHHHB
T ss_pred CCCCCCCEEecCccHHHHHHHHHHHHhCCCEEEECcCeeeCcchhHHHHHHHhc
Confidence 888999999999999999999999997678999999999999999999999998
No 3
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=100.00 E-value=7.5e-74 Score=587.81 Aligned_cols=411 Identities=27% Similarity=0.417 Sum_probs=358.8
Q ss_pred hhhccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEe
Q 011947 19 LAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 98 (474)
Q Consensus 19 ~~~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~ 98 (474)
+.+.+...++++|.++.||++++|.|+ +|+|++|+++|+|++.++|+..++++|++||++|+++
T Consensus 7 ~~i~~~~~l~G~v~vpgsKs~s~Rali----------------~AaLa~g~s~i~n~~~~~Dv~~~~~~L~~lG~~i~~~ 70 (455)
T 3rmt_A 7 TVIPHAKGLKGTIKVPGDKSISHRAVM----------------FGALAKGTTTVEGFLPGADCLSTISCFQKLGVSIEQA 70 (455)
T ss_dssp EEECCCSCEEEEECCCBCHHHHHHHHH----------------HHHHSBSCEEEESCCCSHHHHHHHHHHHTTTCEEEEE
T ss_pred EEEcCCCcceEEEEecCcHHHHHHHHH----------------HHHhcCCCEEEccCCccHHHHHHHHHHHHcCCeEEec
Confidence 445667778999999999999999998 7789999999999999999999999999999999986
Q ss_pred CCcceEEEEecC-CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEE
Q 011947 99 FAMKRAIVEGCG-GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADV 177 (474)
Q Consensus 99 ~~~~~l~i~g~~-~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v 177 (474)
+ ..++|+|.+ ..+..+ ...+++|||||++|||+++++. .++.+.++|+++|++||+.++++.|++||+++
T Consensus 71 ~--~~~~i~g~~~~~~~~~-----~~~i~~g~SGt~mRll~g~la~--~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i 141 (455)
T 3rmt_A 71 E--ERVTVKGKGWDGLREP-----SDILDVGNSGTTTRLILGILST--LPFHSVIIGDESIGKRPMKRVTEPLKSMGAQI 141 (455)
T ss_dssp T--TEEEEECCCGGGCCCC-----SSCEECTTCHHHHHHHHHHHTT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEE
T ss_pred C--CEEEEeCCCCCCcCCC-----cceeecccccccHHHHHHHHHc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEE
Confidence 5 479999875 223333 2368999999999999998765 45889999999999999999999999999999
Q ss_pred EeeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEe
Q 011947 178 DCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHS 257 (474)
Q Consensus 178 ~~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~ 257 (474)
+..++.+++|++|+++ ++++.+|+++ ..|+||++++||||+++.|.++|. ++..+.+ .|+++|++||++|+++
T Consensus 142 ~~~~~~~~~Pl~i~g~-~l~g~~i~l~-~~Ssq~~s~lLlAa~~a~G~t~i~--ep~~s~~---~t~~~L~~~Ga~i~~~ 214 (455)
T 3rmt_A 142 DGRDHGNLTPLSIRGG-QLKGIDFHSP-VASAQMKSAILLAGLRAEGKTSVT--EPAKTRD---HTERMLEAFGVNIEKD 214 (455)
T ss_dssp EEHHHHTEEEEEEECC-SCBCCEEECS-SCCHHHHHHHHHHHHTSBSCEEEE--CSSCCCC---HHHHHHHHTTCCEEEE
T ss_pred EEecCCCcccEEEEeC-CccceEEEEc-cCcHHHHHHHHHHHHhcCCCEEEE--CCcCcHH---HHHHHHHHCCCCEEec
Confidence 8754334789999985 6999999998 579999999999999999988875 2334544 3899999999999988
Q ss_pred CceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhc-cCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCe---
Q 011947 258 DSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV-TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS--- 333 (474)
Q Consensus 258 ~~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~-~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~--- 333 (474)
++ .++|+|.++|+ +.++.+|+|+++|+||++++++ ++|+++++|+..+..+ ..+++.|++||++|+..++.
T Consensus 215 g~--~i~I~g~~~l~-~~~~~V~~D~s~Aa~~l~aaai~~gg~v~i~~~~~~~~~--~~il~~L~~mGa~i~~~~~~~~~ 289 (455)
T 3rmt_A 215 GL--TVSIEGGQMLT-GQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTR--AGILEVLKQMGATLAMENERVQG 289 (455)
T ss_dssp TT--EEEECSCCCCB-CCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTT--THHHHHHHHTTCEEEEEEEEEET
T ss_pred CC--EEEEcCCcccc-CCeeECCCCHHHHHHHHHHHHhcCCCEEEECCCCCchhH--HHHHHHHHHcCCEEEEcCCcccC
Confidence 75 89999987787 7789999999999999999988 6899999999644444 47999999999999987764
Q ss_pred ------EEEeCCCCCCCCCCCcceEEEcCCCCC---cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcC
Q 011947 334 ------VTVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 404 (474)
Q Consensus 334 ------i~i~g~~~~~~~~~~l~g~~i~~~~~~---r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG 404 (474)
+++.+. +++|++|+..+.| |++|.++++|++++|+++|+|+.++|+|||||+..+.++|++||
T Consensus 290 ge~~~~i~v~~~--------~l~~~~i~~~~~P~~~D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmG 361 (455)
T 3rmt_A 290 GEPVADLTIETS--------VLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLG 361 (455)
T ss_dssp TEEEEEEEEECC--------CCBCCCEETTHHHHHGGGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTT
T ss_pred CccceEEEEecC--------CceeEEEeCccCCchHHHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCC
Confidence 777753 6899999999889 88999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCEEEEeCCCCcccce-eecCccHHHHHHHHHHHcC-CCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 405 ATVEEGPDYCVITPPEKLKVAA-IDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 405 ~~i~~~~d~l~I~g~~~l~~~~-v~~~~Dhr~ama~~laal~-~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
+++++++|+++|+|+++++|++ |++++|||+||||++||+. .++++|+|++|++||||+||++|++||++
T Consensus 362 a~i~~~~d~l~I~G~~~l~g~~~v~s~~DhR~amal~iagL~a~g~~~I~~~~~v~ksyp~f~~~l~~Lg~~ 433 (455)
T 3rmt_A 362 ASIHATDDGMIIEGPTPLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAVSYPSFFDHLDRLKSE 433 (455)
T ss_dssp CCEEEETTEEEECSCCCCBCSSEEECTTCHHHHHHHHHHHTTCBSCEEEECTHHHHHHCTTHHHHHHHHHHH
T ss_pred CEEEEECCEEEEECCCCCCCCceecCCCCHHHHHHHHHHHHhCCCCEEEeCcceecCcchhHHHHHHHcccc
Confidence 9999999999999988899998 9999999999999999985 67899999999999999999999999974
No 4
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=100.00 E-value=4.6e-72 Score=575.30 Aligned_cols=410 Identities=29% Similarity=0.469 Sum_probs=360.4
Q ss_pred hhccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeC
Q 011947 20 AQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 99 (474)
Q Consensus 20 ~~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~ 99 (474)
...+...++++|.++.||++++|.|+ +|+|++|+++|+|++.++|+..++++|++||++|++++
T Consensus 7 ~i~~~~~l~G~v~vpgsKs~s~r~l~----------------~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~ 70 (441)
T 3slh_A 7 QTIPSQGLSGEICVPGDKSISHRAVL----------------LAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIE 70 (441)
T ss_dssp EECCCSCCEEEEECCBCHHHHHHHHH----------------HHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEEG
T ss_pred EEeCCCcceEEEEcCCcHHHHHHHHH----------------HHHHcCCCEEEcCCCCcHHHHHHHHHHHHcCCEEEEec
Confidence 34566778999999999999999998 88999999999999999999999999999999999863
Q ss_pred CcceEEEEecC-CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEE
Q 011947 100 AMKRAIVEGCG-GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVD 178 (474)
Q Consensus 100 ~~~~l~i~g~~-~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~ 178 (474)
++..++|+|.+ ..+..+ ...+++++||+++|||++++++ ..++++++|+++|++||+.+|++.|++||+++.
T Consensus 71 ~~~~~~i~~~~~~~~~~~-----~~~i~~g~sgtt~r~l~g~l~~--~~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~ 143 (441)
T 3slh_A 71 DENILVVEGVGMTGLQAP-----PEALDCGNSGTAIRLLSGLLAG--QPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKID 143 (441)
T ss_dssp GGTEEEEECCCTTCCCCC-----SSCEECTTCHHHHHHHHHHHTT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEE
T ss_pred CCCEEEEeccccCCCCCC-----cceeeeccccccHHHHHHHHHh--CCCEEEEeCCcccccCCHHHHHHHHHHcCCEEE
Confidence 23479999875 223333 2469999999999999998876 457888999999999999999999999999994
Q ss_pred eeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC
Q 011947 179 CILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD 258 (474)
Q Consensus 179 ~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~ 258 (474)
.. ++++|++|+|.+++++.+|+++. .|+|+++++||||+++.|+++|.. +.+++++++++|++||++|++.+
T Consensus 144 ~~--~g~~p~~i~g~~~l~g~~i~l~~-~Ssq~~s~lLlAa~~a~g~t~i~e-----~~~~~~~t~~~L~~~Ga~i~~~~ 215 (441)
T 3slh_A 144 ST--GNVPPLKIYGNPRLTGIHYQLPM-ASAQVKSCLLLAGLYARGKTCITE-----PAPSRDHTERLLKHFHYTLQKDK 215 (441)
T ss_dssp EE--TTEEEEEEECCTTCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEEC-----SSCCCCHHHHHHHHTTCCCEECS
T ss_pred ec--CCeEEEEEEcCCCccceEEEecC-CCHHHHHHHHHHHHhcCCCeEeeC-----CcccHHHHHHHHHHCCCeEEEeC
Confidence 32 46789999986459999999996 799999999999999999888862 34556779999999999999876
Q ss_pred ceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhcc-CCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCe----
Q 011947 259 SWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---- 333 (474)
Q Consensus 259 ~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~-~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~---- 333 (474)
+ .++|++.+.++ +.++.+++|+++++||+++++++ +++++++|+..+..+ ..+++.|++||++|+..++.
T Consensus 216 ~--~i~I~g~~~l~-~~~~~V~~D~ssAa~~l~aaal~~g~~v~l~g~~~~~~~--~~~l~~L~~mGa~i~~~~~~~~~~ 290 (441)
T 3slh_A 216 Q--SICVSGGGKLK-ANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTR--LGVINLLKMMGADIEVTHYTEKNE 290 (441)
T ss_dssp S--CEEEETTCCCB-CCCEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGG--CHHHHHHHHHTCEEEEEEEEEETT
T ss_pred C--EEEEcCCCccc-cceEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCccH--HHHHHHHHHcCCEEEEcCCccccC
Confidence 5 89999877787 67899999999999999999998 789999998544343 46899999999999987753
Q ss_pred -----EEEeCCCCCCCCCCCcceEEEcCCCCC---cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCC
Q 011947 334 -----VTVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGA 405 (474)
Q Consensus 334 -----i~i~g~~~~~~~~~~l~g~~i~~~~~~---r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~ 405 (474)
+++++. +|+|++|+..+.| |++|.++++|++++|+++|+|+.++|+|||||+..+.++|++||+
T Consensus 291 e~~~~i~v~~~--------~l~g~~i~~~~~p~~~D~~p~l~~~aa~A~G~t~I~~i~~lR~kEsdRi~~l~~eL~kmGa 362 (441)
T 3slh_A 291 EPTADITVRHA--------RLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGI 362 (441)
T ss_dssp EEEEEEEEECC--------CCBCCEECGGGHHHHGGGHHHHHHHHHTSBSEEEECSCGGGGGSSSCHHHHHHHHHHHTTC
T ss_pred ccceEEEEecC--------CCCceEEecccCCCcHHHHHHHHHHHHhCCCeEEEEeccccccccchHHHHHHHHHHHCCC
Confidence 566643 6899999976555 889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEeCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 406 TVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 406 ~i~~~~d~l~I~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
++++.+|+++|+| .+++|+++++++|||+||+|++||+ +.++++|+|++|++|+||+||++|++||++
T Consensus 363 ~i~~~~d~l~I~G-~~L~g~~v~s~~DhRiamalaia~l~a~g~~~I~~~~~v~ksyp~f~~~l~~lGa~ 431 (441)
T 3slh_A 363 AAESLPDGVIIQG-GTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMN 431 (441)
T ss_dssp EEEEETTEEEEEC-CCCCCEEEECTTCHHHHHHHHHHHHHCSSCEEEECCGGGGGTCTTHHHHHHHHTCC
T ss_pred EEEEeCCEEEEEC-CCCCCCEEECCCCHHHHHHHHHHHHhCCCCEEEecccEecCchHHHHHHHHhCCCe
Confidence 9999999999999 5799999999999999999999998 578999999999999999999999999985
No 5
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=1.1e-67 Score=542.76 Aligned_cols=406 Identities=24% Similarity=0.397 Sum_probs=358.0
Q ss_pred ccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcce
Q 011947 24 SNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKR 103 (474)
Q Consensus 24 ~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~ 103 (474)
+..++++|.++.||++++|.|+ +|+|++|+++|+|.+.++|+..++++|++||++|+.++ ..
T Consensus 7 ~~~l~G~v~ipgsKs~t~r~Ll----------------aa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~--~~ 68 (427)
T 1rf6_A 7 IRHLHGIIRVPGDKSISHRSII----------------FGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD--GV 68 (427)
T ss_dssp CCCEEEEECCCBCHHHHHHHHH----------------HHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEET--TE
T ss_pred CCCceEEEEcCCcHHHHHHHHH----------------HHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecC--CE
Confidence 3467899999999999999998 88899999999999999999999999999999998654 36
Q ss_pred EEEEecC-CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCC
Q 011947 104 AIVEGCG-GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG 182 (474)
Q Consensus 104 l~i~g~~-~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~ 182 (474)
++|+|.+ ..+..+ ...+++++||+++||++++++. .++.+.++|++++..||+..+++.|++||++|+..++
T Consensus 69 ~~I~g~~~~~~~~p-----~~~id~~~sgt~~rll~a~la~--~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~~~~ 141 (427)
T 1rf6_A 69 ITVQGVGMAGLKAP-----QNALNMGNSGTSIRLISGVLAG--ADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTE 141 (427)
T ss_dssp EEEECCCSSCCCCC-----SSCEECTTCHHHHHHHHHHGGG--CSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETT
T ss_pred EEEECCCCCCcCCC-----cceeeccccchHHHHHHHHHhc--CCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEEEcC
Confidence 8999864 123333 2368899999999999987743 3589999999999999999999999999999998633
Q ss_pred CCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
++++|++|+++.++++.+++++ +.|+|+++++++||+++.|+++|... ..+.+++. ++|++||++|+..++ .
T Consensus 142 ~g~~pi~i~~~~~L~g~~i~~~-~~ssq~~s~lllaA~~a~G~t~I~~~--~~~~~~i~---~~L~~~Ga~i~~~~~--~ 213 (427)
T 1rf6_A 142 RDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFAALQAKGESVIIEK--EYTRNHTE---DMLQQFGGHLSVDGK--K 213 (427)
T ss_dssp TTEEEEEEECCTTCCCCEEECS-SCCHHHHHHHHHHHTTSSEEEEEECS--SCCCCHHH---HHHHHTTCCCEEETT--E
T ss_pred CCcceEEEeccCCCCceEEEeC-CCCHHHHHHHHHHHHhcCCCeEEEec--cCCHHHHH---HHHHHCCCCEEecCC--E
Confidence 4567899987325899999998 89999999999999999999888743 35666654 899999999998775 8
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCe-EEEeccCCCCccchhHHHHHHHHcCCEEEEe----c---CeE
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT----E---NSV 334 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~-~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~----~---~~i 334 (474)
++|+|.++|+ +.++.+++|++.+++|++++++++|+ ++++|+..+..+.| +++.|++||++|+.. + +.+
T Consensus 214 i~I~g~~~l~-g~~~~v~~D~~~A~~~~~Aa~~~~g~~v~i~~~~~~~~~~~--~~~~L~~mGa~i~~~~~~~~~~~~~i 290 (427)
T 1rf6_A 214 ITVQGPQKLT-GQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTG--IIDVIRAMGGKLEITEIDPVAKSATL 290 (427)
T ss_dssp EEEEECCCCB-CCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCH--HHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred EEEcCCcccC-CCeEEcCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCChhH--HHHHHHHcCCcEEEccccCCCCcceE
Confidence 9999877787 67899999999999999999999887 99999876666655 999999999999975 4 567
Q ss_pred EEeCCCCCCCCCCCcceEEEcCCCCC---cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeC
Q 011947 335 TVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGP 411 (474)
Q Consensus 335 ~i~g~~~~~~~~~~l~g~~i~~~~~~---r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~ 411 (474)
++++. +|++++++..+.| |++|.+++++++++|+++|+|+.++|+|||||+..+.++|++||+++++++
T Consensus 291 ~v~~~--------~l~~~~i~~~~~p~~~D~~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~~~ 362 (427)
T 1rf6_A 291 IVESS--------DLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTA 362 (427)
T ss_dssp EEECC--------CCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEET
T ss_pred EEeCC--------CCCcEEeccccCCChHHHHHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEEEC
Confidence 77753 5899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCcccceeecCccHHHHHHHHHHH-cC-CCCeEEeCCcccccccccHHHHHHhccc
Q 011947 412 DYCVITPPEKLKVAAIDTYDDHRMAMAFSLAA-CA-DVPVTIKDPSCTRKTFPDYFDVLDSVTK 473 (474)
Q Consensus 412 d~l~I~g~~~l~~~~v~~~~Dhr~ama~~laa-l~-~~~i~I~~~~~v~~s~p~f~~~l~~lg~ 473 (474)
|+++|+|+.+++|++|++|+|||+||+|++|| +. .++++|+|++|++||||+||++|++||+
T Consensus 363 d~~~I~g~~~l~g~~v~s~~DhR~ama~~ia~~l~a~g~~~I~~~~~v~~syp~f~~~l~~lg~ 426 (427)
T 1rf6_A 363 DGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIH 426 (427)
T ss_dssp TEEEEEECCCCCCEEEECTTCHHHHHHHHHHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHHSC
T ss_pred CEEEEeCCCCCCCCeEECCccHHHHHHHHHHHHhcCCCcEEEcccCcccCcchhHHHHHHHhhC
Confidence 99999998788999999999999999999999 85 6679999999999999999999999986
No 6
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=100.00 E-value=1.1e-63 Score=516.36 Aligned_cols=410 Identities=24% Similarity=0.344 Sum_probs=353.5
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 101 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~ 101 (474)
.....++++|.++.||++++|.|+ +|+|++|+++|+|.+.++|+..++++|++||++|+.++
T Consensus 8 ~~~~~l~G~v~ipgsKs~t~r~ll----------------~A~La~g~t~i~n~~~~~dv~~~~~~L~~lG~~i~~~~-- 69 (445)
T 2pqc_A 8 RKSSGLSGTVRIPGDKSISHRSFM----------------FGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG-- 69 (445)
T ss_dssp ECCSCCEEEEECCBCHHHHHHHHH----------------HHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEET--
T ss_pred cCCCcceEEEEcCCCHHHHHHHHH----------------HHHhcCCcEEEccCCCCHHHHHHHHHHHHCCCEEEecC--
Confidence 334567899999999999999998 78899999999999999999999999999999998765
Q ss_pred ceEEEEecC-CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEee
Q 011947 102 KRAIVEGCG-GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180 (474)
Q Consensus 102 ~~l~i~g~~-~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~ 180 (474)
..++|+|.+ ..+..+ ...+++++|||++|||+++++. .++.+.++|++++..||+..+++.|++||++|+..
T Consensus 70 ~~~~I~g~~~~~~~~p-----~~~~d~~~sgt~~r~l~~~l~~--~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~~ 142 (445)
T 2pqc_A 70 DTWIIDGVGNGGLLAP-----EAPLDFGNAATGCRLTMGLVGV--YDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSE 142 (445)
T ss_dssp TEEEEEEECTTCCCCC-----SSCEECTTCHHHHHHHHHHHHT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEccCCCCCCCC-----CcccchhhhhHHHHHHHHHHhc--CCcEEEEECCccCCCCChHHHHHHHHHCCCEEEec
Confidence 368999874 123332 2368999999999999998753 35899999999999999999999999999999876
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEe--C
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHS--D 258 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~--~ 258 (474)
+ ++++|++|+++.++++.+++++ +.|+|+++++++||+++.|+++|... ..+.++ +.++|++||++|+++ +
T Consensus 143 ~-~g~~Pi~i~~~~~l~g~~i~~~-~~ssq~~~~lllaa~~a~G~t~I~~~--~~~~~~---~~~~L~~~Ga~I~~~~~~ 215 (445)
T 2pqc_A 143 D-GDRLPVTLRGPKTPTPITYRVP-MASAQVKSAVLLAGLNTPGITTVIEP--IMTRDH---TEKMLQGFGANLTVETDA 215 (445)
T ss_dssp T-TTEEEEEEECCSSCCCCEEECS-SSCHHHHHHHHHHHHTSSSEEEEEES--SCCCCH---HHHHHHHTTCCEEEEECT
T ss_pred c-CCcccEEEeCCCCCCCeEEEeC-CCCHHHHHHHHHHHhhCCCceEEEEc--cCCHHH---HHHHHHHCCCEEEEecCC
Confidence 4 3677899987435889999998 78999999999999999999988753 345554 459999999999865 4
Q ss_pred c-eeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCe-EEEeccCCCCccchhHHHHHHHHcCCEEEEe-----c
Q 011947 259 S-WDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT-----E 331 (474)
Q Consensus 259 ~-~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~-~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~-----~ 331 (474)
. .+.++|+|.+.++ +.++.+++|++.+++|++++++++|. +++.|+..++.+.| +++.|++||++|+.. +
T Consensus 216 ~g~~~~~I~g~~~l~-~~~~~v~~D~s~a~~~l~aa~~~~g~~v~i~~~~~~~~~~~--~~~~L~~mGa~i~~~~~~~~~ 292 (445)
T 2pqc_A 216 DGVRTIRLEGRGKLT-GQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTG--LILTLQEMGADIEVINPRLAG 292 (445)
T ss_dssp TSCEEEEEETTCCCB-CCEEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGGCH--HHHHHHHHTCEEEEEEEEEET
T ss_pred CCccEEEEeCCcccc-CceeEcCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcch--HHHHHHHcCCeEEEccccccC
Confidence 1 1378999876776 66788999999999999999998776 99999876566654 999999999999973 2
Q ss_pred ----CeEEEeCCCCCCCCCCCcceEEEcCCCCC---cHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcC
Q 011947 332 ----NSVTVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 404 (474)
Q Consensus 332 ----~~i~i~g~~~~~~~~~~l~g~~i~~~~~~---r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG 404 (474)
+.++|++. .++|++++..+.| |++|+|++++++++|+++|+++.++|+|||||+..+.++|++||
T Consensus 293 g~~~~~i~v~~~--------~l~~~~i~~~~~p~~~D~~p~l~~~a~~a~G~s~i~~~~~lr~kEsdRi~~~~~eL~~~G 364 (445)
T 2pqc_A 293 GEDVADLRVRSS--------TLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNG 364 (445)
T ss_dssp TEEEEEEEEECC--------CCBCCEECGGGGGGTGGGHHHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTT
T ss_pred CCccCcEEEeCC--------CCCceEeccccCCchHHHHHHHHHHHHhCCCcEEEEcccccccccchHHHHHHHHHHHCC
Confidence 45777753 5899999999899 99999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCEEEEeCC--C-Cc--cc-ceeecCccHHHHHHHHHHHcC-CCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 405 ATVEEGPDYCVITPP--E-KL--KV-AAIDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 405 ~~i~~~~d~l~I~g~--~-~l--~~-~~v~~~~Dhr~ama~~laal~-~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
+++++++|+++|+|+ . ++ ++ ++|++|+|||+||+|++||+. .+.++|+|++|++|+||+||++|++||++
T Consensus 365 a~i~~~~d~~~I~g~~~~~~l~~~~~~~v~~~~DhR~ama~~ia~l~~~g~~~I~~~~~v~~~yp~f~~~l~~lGa~ 441 (445)
T 2pqc_A 365 VDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAK 441 (445)
T ss_dssp CEEEECSSCEEEECCTTCTTCSCTTCCEECCTTCHHHHHHHHHHHTTSSSCEEESCCTTGGGTCTTHHHHHHHHTCE
T ss_pred CEEEEcCCEEEEeCCCCCCccccCCCceEECCCcHHHHHHHHHHHhcCCCCEEEcccchhcCcchHHHHHHHHhcCe
Confidence 999999999999997 3 56 66 899999999999999999985 66799999999999999999999999974
No 7
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=100.00 E-value=1.1e-61 Score=502.71 Aligned_cols=410 Identities=17% Similarity=0.208 Sum_probs=335.2
Q ss_pred hhhccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEe
Q 011947 19 LAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 98 (474)
Q Consensus 19 ~~~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~ 98 (474)
+.+.++..++++|.++.||++++|+|+ +|+|++|+++|+|++.++|+..++++|++||++|+++
T Consensus 16 ~~i~~~~~l~G~v~vpgsKs~s~r~l~----------------~aaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~ 79 (479)
T 4fqd_A 16 LEIHGGNRLSGAVRTSGFKHSLVTTVA----------------AAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHYD 79 (479)
T ss_dssp EEEECCCCBCSEEECCBCHHHHHHHHH----------------HHTTCSSEEEEESCCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEeCCCcceEEEEcCCcHHHHHHHHH----------------HHHhcCCCEEEccCCCchhHHHHHHHHHHcCCEEEEe
Confidence 345667788999999999999999998 8889999999999999999999999999999999984
Q ss_pred CCcceEEEEecCCC-CCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcC----CCChhhHHHHHHhC
Q 011947 99 FAMKRAIVEGCGGL-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR----ERPIGDLVTGLKQL 173 (474)
Q Consensus 99 ~~~~~l~i~g~~~~-~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~----~rp~~~l~~~L~~~ 173 (474)
++...++|+|.+.. +..+ .. ..+++++++|||.++++. .+.+.+.++|+++|+ +||+.++++.|++|
T Consensus 80 ~~~~~~~i~g~~~~~~~~~------~~-~~~~~~ts~~~l~~l~a~-~~~~~~~l~G~~~l~~~~~~RPi~~~~~~L~~l 151 (479)
T 4fqd_A 80 GADETFTVDASAWDRAELP------AD-LVGRIHGSLYLLPALVSR-NGVARLSASGGCPIGEGPRGRPDEHLLDVMGRF 151 (479)
T ss_dssp TTTTEEEEECTTCCCSCCC------HH-HHTTCSGGGGGHHHHHHH-TSEEEECC------------CCCHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCCCCC------hh-HhcccchhHHHHHHHHhc-CCCeEEEEeCCcccccCCCCCChHHHHHHHHHC
Confidence 22257999987531 2221 12 256889999999887664 234678899999999 99999999999999
Q ss_pred CCEEEeeCCCCCCcEEEecCCCCCCeeEEEc-CCCCHHHHHH---------HHHHhhcCCCceEEEEccCCCCchhHHHH
Q 011947 174 GADVDCILGTNCPPVRINGKGGLPGGKVKLS-GKLSSQYLTA---------LLMAAPLALGNVEIEIIDKLISVPYVEMT 243 (474)
Q Consensus 174 G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~-gd~Ss~~~sa---------ll~aa~l~~g~~~I~~~~~~~s~~~~~~~ 243 (474)
|++++..+ ++++|+++ + ++++++|+++ ..-||||+|+ +|+||+++.|.++|++ ..+.+|+.+|
T Consensus 152 Ga~i~~~~-~g~~p~~~--~-~l~g~~i~l~~~sSSSQfiS~lq~v~~t~~lLlaa~la~G~t~I~~---~~~~pdi~~T 224 (479)
T 4fqd_A 152 GVTTRLTA-DGSVDLTA--Q-RLTPCTIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQH---PYLKPDVTDM 224 (479)
T ss_dssp TCEEEECT-TSCEEEEC--S-SCCCCEEEGGGGCSBTTTTBCTTHHHHHHHHHHHHHTSEEEEEEES---CCCSHHHHHH
T ss_pred CCEEEecc-CCceEEEE--c-CccccEEEeccccchHHhhccchhHHHHHHHHHHHHhCCCcEEEec---CCCChHHHHH
Confidence 99998753 36767764 2 6999999995 3334577775 7888889999998874 3467899999
Q ss_pred HHHHHHcCCEEEEeCceeEEEEeCC---CcccCCcceeecCCchhhHHHHHHHhc-cCCeEEEeccCCCCcc-chhHHHH
Q 011947 244 LKLMERFGVFVEHSDSWDRFFIQGG---QKYKSPGNAFVEGDASSASYFVAGAAV-TGGTVTVEGCGTSSLQ-GDVKFAE 318 (474)
Q Consensus 244 ~~~L~~~G~~i~~~~~~~~i~i~~~---~~l~~~~~~~~~~D~~~a~~ll~~aa~-~~g~~~i~g~~~~~~~-~d~~~~~ 318 (474)
+++|++||++|+++++ +.++|+|. +.++ +.++.+++|+++++||++++++ ++|+++|+|+..++++ .+..+++
T Consensus 225 l~~L~~~Ga~I~~~~~-~~i~I~g~g~~~~l~-~~~~~V~~D~s~Ag~fl~aaal~~gg~v~l~g~~~~s~~~~~~~i~~ 302 (479)
T 4fqd_A 225 VTVLRDLGADIEFAGP-ETWVIHGRGPESLHR-PVDVTLIPDLIEVVTWICAGVLLADEPLRITGPGIDRAVHALAPEFD 302 (479)
T ss_dssp HHHHHHHTCCEEEEET-TEEEEEEECGGGCCC-CEEEECCBCHHHHHHHHHHHHHHBSSCEEEECTTHHHHHHHTHHHHH
T ss_pred HHHHHHCCCeEEEcCC-CEEEEeCCCCCCccC-CCceEeCCChHhHHHHHHHHHHcCCCeEEEeCCCCccccCchHHHHH
Confidence 9999999999998753 37999886 5665 6788899999999999988888 7899999998755555 3478999
Q ss_pred HHHHcCCEEEEecCeEEEeCCCCCCCCCCCcceEEEcCCC---CCcHHHHHHHHHHhCCCCeEEecccccccccchhHHH
Q 011947 319 VLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK---MPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIA 395 (474)
Q Consensus 319 ~L~~mGa~v~~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~---~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~ 395 (474)
.|++||++|+..++.++|.+.. ++|+|++++..+ .+|++|+++++|++++|+++|.+. ++| +|+ .
T Consensus 303 ~L~~mGa~i~~~~~~i~v~~~~------~~L~g~~i~~~~~~~~~D~~p~l~~~a~~A~G~t~I~e~----i~e-~R~-~ 370 (479)
T 4fqd_A 303 LLDRMGVRVDVGADEVTAHPLT------KPLRPVEFTAMSRGVFSDSQPFLALLGAYAEGPTYIREA----VWE-HRF-G 370 (479)
T ss_dssp HHHHHTCCEEECSSEEEECCCS------SCBCCCEEEECTTSBCTTTHHHHHHHHTTBSEEEEEEES----SSS-SCC-T
T ss_pred HHHHCCCEEEEcCCeEEEEecC------CCCCCeEEecCCCCCCHHHHHHHHHHHHhCCCcEEEEcC----Ccc-cHH-H
Confidence 9999999999999999998721 268999988754 369999999999999999999642 244 577 5
Q ss_pred HHHHHHHcCCEEEEeCCEEEEeCCCCc--ccceeecCccHHHHHHHHHHHcC-CCCeEEeCCcccccccccHHHHHHhcc
Q 011947 396 ICTELRKLGATVEEGPDYCVITPPEKL--KVAAIDTYDDHRMAMAFSLAACA-DVPVTIKDPSCTRKTFPDYFDVLDSVT 472 (474)
Q Consensus 396 ~~~~L~~lG~~i~~~~d~l~I~g~~~l--~~~~v~~~~Dhr~ama~~laal~-~~~i~I~~~~~v~~s~p~f~~~l~~lg 472 (474)
+.++|++||+++++++|+++|+|++++ ++.+|++ +|||+||+|++||+. .+.++|+|++|++++||+||++|++||
T Consensus 371 ~~~eL~~lGa~i~~~~d~~~I~g~~~l~~~g~~V~~-~DhR~Ama~~vaal~~~g~i~I~~~~~v~ksyp~f~~~L~~lG 449 (479)
T 4fqd_A 371 FAPELEALGIRTAVDDTVLRVDGPCPPHRPGTDLRA-TDLRAAAVLLLAALAVPGRTTLRNHHHLARGYRDLVEDLVKLG 449 (479)
T ss_dssp THHHHHHHTCCEEEETTEEEEEESCCCCCCSEEEEC-CSHHHHHHHHHHHTTSSSEEEEECGGGGGGTCSCHHHHHHHTT
T ss_pred HHHHHHHCCCeEEEECCEEEEeCCCcccCCCcEEeC-CCHHHHHHHHHHHHhCCCeEEEcCcccccCCHHHHHHHHHhCC
Confidence 889999999999999999999998778 8889999 899999999999985 566999999999999999999999999
Q ss_pred cC
Q 011947 473 KR 474 (474)
Q Consensus 473 ~~ 474 (474)
++
T Consensus 450 a~ 451 (479)
T 4fqd_A 450 AD 451 (479)
T ss_dssp CE
T ss_pred CE
Confidence 84
No 8
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=100.00 E-value=6.9e-60 Score=484.27 Aligned_cols=397 Identities=21% Similarity=0.284 Sum_probs=339.0
Q ss_pred ccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCcce
Q 011947 24 SNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKR 103 (474)
Q Consensus 24 ~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~~~ 103 (474)
...+.++|.++.||++++|+|+ ++++++|+++|+|.+.++|+..++++|++||++|++++ .
T Consensus 9 ~~~l~G~v~i~gsks~~~r~Ll----------------aa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~---~ 69 (419)
T 1ejd_A 9 PTRLQGEVTISGAKNAALPILF----------------AALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG---S 69 (419)
T ss_dssp CCCCEEEEECCBCHHHHHHHHH----------------HGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS---S
T ss_pred CCCceEEEEecCcHHHHHHHHH----------------HHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc---e
Confidence 3567899999999999999998 88899999999999999999999999999999998643 6
Q ss_pred EEEEecCC-CCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCC
Q 011947 104 AIVEGCGG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG 182 (474)
Q Consensus 104 l~i~g~~~-~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~ 182 (474)
++|++.+. .+..+ .. .+++++++++++.+++.. .++..+.++|++++.+||+..+++.|++||++|+..+
T Consensus 70 ~~I~~~~~~~~~~~------~d-~~~~~ras~~l~~alla~-~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~~~- 140 (419)
T 1ejd_A 70 VWIDASNVNNFSAP------YD-LVKTMRASIWALGPLVAR-FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEE- 140 (419)
T ss_dssp EEEECTTCCCCEEC------HH-HHTTCGGGGGGHHHHHHH-HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEET-
T ss_pred EEEecCCCCCCcCc------hH-HhhhhhHHHHHHHHHhhc-CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEEcC-
Confidence 88888641 12221 11 356777888777665542 2346788999999999999999999999999998743
Q ss_pred CCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
++ +.+...+++++.+++++. .|+|++++++++|+++.|.++|++ ..+++++++++++|++||++|+.+++ +.
T Consensus 141 -g~--~~v~~~~~L~g~~i~~~~-~s~~~~~~ll~aa~~a~G~t~I~~---~~~e~~i~~t~~~L~~~Ga~i~~~~~-~~ 212 (419)
T 1ejd_A 141 -GY--VKASVNGRLKGAHIVMDK-VSVGATVTIMSAATLAEGTTIIEN---AAREPEIVDTANFLVALGAKISGQGT-DR 212 (419)
T ss_dssp -TE--EEEECSSSCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEET---CCCCHHHHHHHHHHHHTTCEEECTTS-SE
T ss_pred -CE--EEEEEcCCccceEEecCC-CCHHHHHHHHHHHhcCCCcEEEEe---CCCCchHHHHHHHHHHCCCEEEEccC-CE
Confidence 44 444432258899999986 799999999999999999998884 35788999999999999999987653 37
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCC
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 342 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 342 (474)
++|+|.++|+ +.++.+++|++.|++|++++++++++++|+|+...+++ .+.+.|++||++|+..++.+++++.+
T Consensus 213 i~I~g~~~l~-g~~~~v~~D~s~A~~~~~aa~~~~g~v~i~~~~~~~~~---~~~~~L~~mGa~i~~~~~~i~v~~~~-- 286 (419)
T 1ejd_A 213 ITIEGVERLG-GGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLD---AVLAKLREAGADIETGEDWISLDMHG-- 286 (419)
T ss_dssp EEEECCSCBC-CEEEECCBCHHHHHHHHHHHHTTTCEEEEESCCGGGCH---HHHHHHHHTTCEEEECSSEEEEECTT--
T ss_pred EEEeCCCccc-ccEEEeeCCHHHHHHHHHHHHhcCCeEEEeCcCcccHH---HHHHHHHHCCCEEEEcCCEEEEEecC--
Confidence 9999877786 77899999999999999999999999999999877776 89999999999999999999998721
Q ss_pred CCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEe-cccccccccchhHHHHHHHHHHcCCEEEEeCCEEEEe
Q 011947 343 PYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIR-DVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417 (474)
Q Consensus 343 ~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~-~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~I~ 417 (474)
+++++++++..+.| |++|.+++++++++|+++|+ ++.+.|+| ..++|++||+++++++|+++|+
T Consensus 287 ----~~l~~~~i~~~~~p~~~~D~~p~la~la~~a~g~s~i~~~i~~~R~~-------~~~eL~~lG~~i~~~~d~~~I~ 355 (419)
T 1ejd_A 287 ----KRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFM-------HVPELIRMGAHAEIESNTVICH 355 (419)
T ss_dssp ----CCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSEEEEECCSCSSCCT-------HHHHHHHTTCEEEEETTEEEEE
T ss_pred ----CCccceEEeCCCCCCCcHHHHHHHHHHHHhCCCcEEEEccchHhHHH-------HHHHHHHCCCEEEEECCEEEEe
Confidence 25899999998777 99999999999999999999 58877765 2688999999999999999999
Q ss_pred CCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 418 PPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 418 g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
|+.+++|++|++ +|||+||+|++||+ +.+.++|+|++|++||||+||++|++||++
T Consensus 356 g~~~l~g~~v~~-~DhR~ama~~ia~l~~~g~~~I~~~~~v~~syp~f~~~l~~lg~~ 412 (419)
T 1ejd_A 356 GVEKLSGAQVMA-TDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGAN 412 (419)
T ss_dssp CCSCCBCCEECC-SSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSSSHHHHHHTTTCE
T ss_pred CCCCCcCCEEeC-CcHHHHHHHHHHHhcCCCCEEECCcCeeeCcCccHHHHHHHhCCE
Confidence 987889999998 79999999999998 566799999999999999999999999974
No 9
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=100.00 E-value=1.6e-58 Score=476.88 Aligned_cols=397 Identities=23% Similarity=0.315 Sum_probs=334.5
Q ss_pred hhhccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccC-CCeeEEecCCCCHhHHHHHHHHHHcCCEEEE
Q 011947 19 LAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSF-QGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 97 (474)
Q Consensus 19 ~~~~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~-~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~ 97 (474)
+...+...++++|.++.||++++|+|+ +|+|+ +|+++|+|++.++|+..++++|++||++|++
T Consensus 28 ~~i~~~~~l~G~v~vpgsKs~~~~~l~----------------aa~La~~g~s~i~n~~~~~D~~~~~~~l~~lG~~i~~ 91 (454)
T 3r38_A 28 IIVRGGKQLNGSVKMEGAKNAVLPVIA----------------ATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVSF 91 (454)
T ss_dssp EEEECCCCCEEEEECCBCHHHHHHHHH----------------HGGGEEESCEEEESCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCCCceEEEEcCCCHHHHHHHHH----------------HHHhCCCCeEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 334556778999999999998988887 77788 9999999999999999999999999999998
Q ss_pred eCCcceEEEEecCC-CCCccccCCCcceEEecCchhhhH----HHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHh
Q 011947 98 DFAMKRAIVEGCGG-LFPLAKQQTGEIELFLGNAGTAMR----PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQ 172 (474)
Q Consensus 98 ~~~~~~l~i~g~~~-~~~~~~~s~~~~~i~~g~sg~t~r----~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~ 172 (474)
++ ..++|+|.+. .+..+ . +.++++| ||.++++. .+.+.+.++|+++|++||+.++++.|++
T Consensus 92 ~~--~~~~i~~~~~~~~~~~----------~-~~~~~~Ras~l~l~~l~a~-~~~~~~~l~G~~~l~~RPi~~~~~~L~~ 157 (454)
T 3r38_A 92 VN--DEVTVDATGEITSDAP----------F-EYVRKMRASIVVMGPLLAR-TGSARVALPGGCAIGSRPVDLHLKGFEA 157 (454)
T ss_dssp ET--TEEEEECCSCCCCEEC----------S-HHHHHCGGGGGGHHHHHHH-HSEEEEECCCCCSSSSCCSHHHHHHHHH
T ss_pred EC--CEEEEECCCCCCCcCC----------h-hHhhccchHHHHHHHHHhC-CCCeEEEeCCCcccccCCHHHHHHHHHH
Confidence 65 4799998752 12111 1 2234666 55554443 2346889999999999999999999999
Q ss_pred CCCEEEeeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCC
Q 011947 173 LGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGV 252 (474)
Q Consensus 173 ~G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~ 252 (474)
||++++..+ ++ +.+++. ++++.+|+++. .|+|+++++|+||+++.|.++|++. .+.|++..++++|++||+
T Consensus 158 lGa~i~~~~--g~--~~i~~~-~l~g~~~~l~~-~S~q~~s~lLlAa~la~G~t~I~~~---~~~p~i~~t~~~L~~~Ga 228 (454)
T 3r38_A 158 MGAVVKIEN--GY--IEATAE-KLVGAKVYLDF-PSVGATQNIMMAATLAEGTTVIENV---AREPEIVDLANFLNQMGA 228 (454)
T ss_dssp TTCEEEEET--TE--EEEECS-SCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEESC---CCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEecC--CE--EEEEEc-CccCcEEEecC-CCHHHHHHHHHHHhcCCCcEEEEcC---CCCcHHHHHHHHHHHCCC
Confidence 999998753 44 445554 68999999996 7999999999999999999998753 467899999999999999
Q ss_pred EEEEeCceeEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecC
Q 011947 253 FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTEN 332 (474)
Q Consensus 253 ~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~ 332 (474)
+|+.++. ..++|+|.+.++ +.++.+++|+++++||++++++++|+++++|+...+++ .+++.|++||++|+..++
T Consensus 229 ~I~~~~~-~~i~I~g~~~l~-~~~~~v~~D~s~A~~~l~aaal~gg~v~i~g~~~~~~~---~i~~~L~~mGa~i~~~~~ 303 (454)
T 3r38_A 229 RVIGAGT-EVIRIEGVKELT-ATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHIS---SLIAKLEEMGVQIIEEEN 303 (454)
T ss_dssp CEECTTS-SEEEEECCSCEE-CCEEECCBCHHHHHHHHHHHHHTTCEEEEESCCGGGGH---HHHHHHHHTTCEEEEC--
T ss_pred CEEECCC-eEEEEecCcccc-ccccccCCChhHHHHHHHHHHHcCCcEEEcCCCchHHH---HHHHHHHHCCCEEEecCC
Confidence 9997653 379999876676 56789999999999999999999999999998655554 899999999999999988
Q ss_pred eEEEeCCCCCCCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEec-ccccccccchhHHHHHHHHHHcCCEE
Q 011947 333 SVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATV 407 (474)
Q Consensus 333 ~i~i~g~~~~~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~~-~~~~r~kesdR~~~~~~~L~~lG~~i 407 (474)
.++|+|.. +|+|++++..+.| |+.|.+++++++++|+++|.+ +.+.|++| .++|++||+++
T Consensus 304 ~i~V~g~~-------~L~g~~i~~~~~p~~p~D~~~~l~~laa~A~G~t~i~e~i~~~R~~~-------~~~L~~mGa~i 369 (454)
T 3r38_A 304 GIRVIGPD-------KLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMH-------VEEMRRMNADM 369 (454)
T ss_dssp CEEEECCS-------SCCCCCEEBCSTTSBCGGGHHHHHHHHHHSSSEEEEECSSCTTCCTT-------HHHHHHTTCCE
T ss_pred eEEEEECC-------CccceEEecccCCCCcccHHHHHHHHHHhcCCCEEEEcCccccHHHH-------HHHHHhCCCEE
Confidence 89998752 6899999987777 999999999999999999985 56666553 47899999999
Q ss_pred EEeCCEEEEeCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 408 EEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 408 ~~~~d~l~I~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
++++|+++|+|+++++|+++++ +|||+||+|++||+ +.+.++|+|++|++|+||+||++|++||++
T Consensus 370 ~~~~d~l~I~G~~~l~g~~v~~-~DhR~Ama~~vaal~a~G~~~I~~~~~v~~s~p~f~~~L~~lGa~ 436 (454)
T 3r38_A 370 KIEGHSVIISGPAKLQGAEVAA-TDLRAAAALILAGLVADGYTQVTELKYLDRGYNNFHGKLQALGAD 436 (454)
T ss_dssp EEETTEEEEECSCCCBCCEEEC-CSHHHHHHHHHHHHHSBSEEEEECTHHHHTTCSSHHHHHHHTTCE
T ss_pred EEECCEEEEeCCCCceeeEEec-CCHHHHHHHHHHHHhCCCcEEEeCCccccCChhHHHHHHHhCCCE
Confidence 9999999999988899999999 89999999999997 567789999999999999999999999985
No 10
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=100.00 E-value=8.4e-59 Score=476.49 Aligned_cols=396 Identities=18% Similarity=0.225 Sum_probs=339.4
Q ss_pred ccccccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeCCc
Q 011947 22 LRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 101 (474)
Q Consensus 22 ~~~~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~~~ 101 (474)
.++..++++|.++.||++++|.|+ +|+|++|+++|+|++.++|+..++++|++||++|++++
T Consensus 16 ~~~~~l~G~v~vpgsKs~s~r~l~----------------~aaLa~g~~~i~n~~~~~D~~~~~~~l~~lG~~i~~~~-- 77 (425)
T 2yvw_A 16 RGGKPLTGKVKISGAKNAALPIMF----------------ATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLN-- 77 (425)
T ss_dssp ECCCCCEEEEECCBCHHHHHHHHH----------------HGGGCSSCEEEESCCCSHHHHHHHHHHHHTTCEEEEET--
T ss_pred eCCCcceEEEEccCcHHHHHHHHH----------------HHHhCCCCEEEecCCchHHHHHHHHHHHHCCCEEEEeC--
Confidence 344678999999999999999998 88999999999999999999999999999999998764
Q ss_pred ceEEEEecCC-CCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEee
Q 011947 102 KRAIVEGCGG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180 (474)
Q Consensus 102 ~~l~i~g~~~-~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~ 180 (474)
..++|+| +. .+..+ ..+++++++++|||.++++.. +...+.++|+++|++||+..|++.|+++|++|++.
T Consensus 78 ~~~~i~~-~~~~~~~p-------~~~~~~~rts~~~l~~l~a~~-~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~ 148 (425)
T 2yvw_A 78 NTVFINP-SINSFITN-------QEIIRRMRASVLSLGPLLGRF-GRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVR 148 (425)
T ss_dssp TEEEEEC-CCCCCEEC-------HHHHHHCGGGGGGHHHHHHHH-SEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEC-CCCCCCCc-------hhhhcccchHHHHHHHHhccC-CcEEEEECCCcccccCCHHHHHHHHHHCCCEEEec
Confidence 4688988 52 23322 125789999999998876642 34688999999999999999999999999999873
Q ss_pred CCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCce
Q 011947 181 LGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW 260 (474)
Q Consensus 181 ~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~ 260 (474)
++++|+++ + ++++.++.++. .|+|++++++++|+++.|+++|++ ..+.+|+.+++++|++||++|+++++
T Consensus 149 --~g~~~i~~--~-~l~g~~i~~~~-~S~~~~s~lllaa~la~g~t~i~~---~~~~~~i~~t~~~L~~~Ga~i~~~~~- 218 (425)
T 2yvw_A 149 --EGYVYVNL--K-EKRRVHFKFDL-VTVTGTENALLYLASVPEESILEN---IALEPEVMDLIEVLKKMGAHVKVEGR- 218 (425)
T ss_dssp --TTEEEEEC--S-SCCCCEEECSS-CCHHHHHHHHHHHTTCSSEEEEES---CCCCHHHHHHHHHHHHTTCEEEEETT-
T ss_pred --CCEEEEEe--c-CccceEEeccc-ccHHHHHHHHHHHHhcCCCEEEeC---CCCCchHHHHHHHHHHCCCeEEEcCC-
Confidence 35555554 3 58888999986 799999999999999999888884 35789999999999999999998763
Q ss_pred eEEEEeCCCcccCCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCC
Q 011947 261 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 340 (474)
Q Consensus 261 ~~i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~ 340 (474)
+.+ |++.+.++ +.++.+++|++.++||++++++++|+++++|+...+++ .+++.|++||++|+..++.++|++..
T Consensus 219 ~~i-I~g~~~l~-~~~~~v~~D~s~A~t~l~aaal~~g~v~l~g~~~~~~~---~l~~~L~~mGa~i~~~~~~i~i~~~~ 293 (425)
T 2yvw_A 219 SAY-VKGSENLK-GFTHSVIPDRIEAGTFMVGAVLTDGEILLENARINHLR---AVVEKLKLIGGEVVEENGNLRVFRKE 293 (425)
T ss_dssp EEE-EECCSSCC-CCEEECCBCHHHHHHHHHHHHHTTCEEEEESCCGGGCH---HHHHHHHHHTEEEEEETTEEEEEECS
T ss_pred EEE-EeCCCccC-CccccccCchhHHHHHHHHHHhCCCcEEEeCCCchHHH---HHHHHHHHCCCEEEEcCCEEEEEecC
Confidence 367 88866676 66788899999999999999888999999998766665 79999999999999988899998741
Q ss_pred CCCCCCCCcceEEEcCCCCC----cHHHHHHHHHHhCCCCeEEec-ccccccccchhHHHHHHHHHHcCCEEEEeCCEEE
Q 011947 341 RDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELRKLGATVEEGPDYCV 415 (474)
Q Consensus 341 ~~~~~~~~l~g~~i~~~~~~----r~~~~lav~a~~a~g~~~I~~-~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d~l~ 415 (474)
+|+|++++..+.| |+.|.+++++++++|+++|++ +.+. |+ ...++|++||+++++.+|+++
T Consensus 294 -------~L~g~~i~~~~~p~~p~d~~~~~~~aa~~a~G~t~I~~~~~e~------r~-~~~~~L~~~Ga~i~~~~d~l~ 359 (425)
T 2yvw_A 294 -------SLRACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKENIFEH------RF-HHAQELNRLGANITVRGNTAY 359 (425)
T ss_dssp -------CCBCCCEEBCSTTSBCHHHHHHHHHHHTTSBSEEEEECSSCTT------CC-HHHHHHHTTTCCEEEETTEEE
T ss_pred -------CccceEEeCCCCCCCcccHHHHHHHHHHHCCCeEEEEcCcHHH------HH-HHHHHHHhCCCEEEEECCEEE
Confidence 5899988887666 999999999999999999996 4444 44 357889999999999999999
Q ss_pred EeCCCCcccceeecCccHHHHHHHHHHHc-CCCCeEEeCCcccccccccHHHHHHhcccC
Q 011947 416 ITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474 (474)
Q Consensus 416 I~g~~~l~~~~v~~~~Dhr~ama~~laal-~~~~i~I~~~~~v~~s~p~f~~~l~~lg~~ 474 (474)
|+|+++++|+++.+ +|||+||+|++|++ +.+.++|+|++|++++||+||++|++||++
T Consensus 360 I~g~~~l~g~~v~~-~D~r~A~~~~~aal~a~g~v~I~~~~~~~r~~p~f~~~L~~lGa~ 418 (425)
T 2yvw_A 360 VEGVERLYGSEVYS-TDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKLGAD 418 (425)
T ss_dssp EECCSCCBCCEEEC-CCTTTTHHHHHHHHHSBSEEEEECTHHHHHHCSSHHHHHHHTTCC
T ss_pred EeCCCCCcCCeecC-CcHHHHHHHHHHHHhCCCcEEEeCceeecCchHHHHHHHHHcCCe
Confidence 99987788988987 79999999999987 567799999999999999999999999985
No 11
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=100.00 E-value=3.2e-44 Score=368.56 Aligned_cols=330 Identities=19% Similarity=0.241 Sum_probs=255.2
Q ss_pred cccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcc
Q 011947 25 NQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMK 102 (474)
Q Consensus 25 ~~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~ 102 (474)
..+...+||++||| ++||++++++.. .+.+++.| .+..||++.++++|++|||+|..+++..
T Consensus 86 ~~~~~~i~~g~sgt-t~r~l~g~l~~~---------------~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g~~ 149 (441)
T 3slh_A 86 QAPPEALDCGNSGT-AIRLLSGLLAGQ---------------PFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVP 149 (441)
T ss_dssp CCCSSCEECTTCHH-HHHHHHHHHTTS---------------SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTEE
T ss_pred CCCcceeeeccccc-cHHHHHHHHHhC---------------CCEEEEeCCcccccCCHHHHHHHHHHcCCEEEecCCeE
Confidence 34456799999999 999999876644 44566676 7899999999999999999995555557
Q ss_pred eEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeC
Q 011947 103 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCIL 181 (474)
Q Consensus 103 ~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~ 181 (474)
|++|+|.+ .++.. +..++..+|+.+..+|+|++++ ++.+++.. +.||+++ +++|++||++|+..+
T Consensus 150 p~~i~g~~-~l~g~-----~i~l~~~Ssq~~s~lLlAa~~a---~g~t~i~e-----~~~~~~~t~~~L~~~Ga~i~~~~ 215 (441)
T 3slh_A 150 PLKIYGNP-RLTGI-----HYQLPMASAQVKSCLLLAGLYA---RGKTCITE-----PAPSRDHTERLLKHFHYTLQKDK 215 (441)
T ss_dssp EEEEECCT-TCBCC-----EEECSSCCHHHHHHHHHHHTTS---BSEEEEEC-----SSCCCCHHHHHHHHTTCCCEECS
T ss_pred EEEEEcCC-Cccce-----EEEecCCCHHHHHHHHHHHHhc---CCCeEeeC-----CcccHHHHHHHHHHCCCeEEEeC
Confidence 99999853 13332 2233333444455688887765 34555542 4566666 999999999998742
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcC-CCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCce
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA-LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW 260 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~-~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~ 260 (474)
+ +++|+|.+++++.+|.|++|+|++ +.|++|++++ +++++|++... .++...++++|++||++|++++++
T Consensus 216 --~--~i~I~g~~~l~~~~~~V~~D~ssA--a~~l~aaal~~g~~v~l~g~~~---~~~~~~~l~~L~~mGa~i~~~~~~ 286 (441)
T 3slh_A 216 --Q--SICVSGGGKLKANDISIPGDISSA--AFFIVAATITPGSAIRLCRVGV---NPTRLGVINLLKMMGADIEVTHYT 286 (441)
T ss_dssp --S--CEEEETTCCCBCCCEECCBCHHHH--HHHHHHHHHSTTCEEEEEEEEC---CGGGCHHHHHHHHHTCEEEEEEEE
T ss_pred --C--EEEEcCCCccccceEEeCCCHHHH--HHHHHHHHhcCCCEEEEcCCCC---CccHHHHHHHHHHcCCEEEEcCCc
Confidence 2 699999777999999999999996 4555555666 56788887632 223245799999999999987542
Q ss_pred e-------EEEEeCCCcccCCccee---ec--CCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCC
Q 011947 261 D-------RFFIQGGQKYKSPGNAF---VE--GDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGA 325 (474)
Q Consensus 261 ~-------~i~i~~~~~l~~~~~~~---~~--~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa 325 (474)
. .+++++. +++ +.++. +| +|.. +.+++++++++|+++|+|+.++|+| +| .+++++|++||+
T Consensus 287 ~~~~e~~~~i~v~~~-~l~-g~~i~~~~~p~~~D~~--p~l~~~aa~A~G~t~I~~i~~lR~kEsdRi~~l~~eL~kmGa 362 (441)
T 3slh_A 287 EKNEEPTADITVRHA-RLK-GIDIPPDQVPLTIDEF--PVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGI 362 (441)
T ss_dssp EETTEEEEEEEEECC-CCB-CCEECGGGHHHHGGGH--HHHHHHHHTSBSEEEECSCGGGGGSSSCHHHHHHHHHHHTTC
T ss_pred cccCccceEEEEecC-CCC-ceEEecccCCCcHHHH--HHHHHHHHhCCCeEEEEeccccccccchHHHHHHHHHHHCCC
Confidence 1 3667653 454 44332 11 2443 4788888999999999999998888 56 678999999999
Q ss_pred EEEEecCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCC
Q 011947 326 KVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGA 405 (474)
Q Consensus 326 ~v~~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~ 405 (474)
+|++.+|.++|+|. +|+|+++++++|||++|+++++++.++|+++|+|++|+.+. ||+||+.|+++|+
T Consensus 363 ~i~~~~d~l~I~G~--------~L~g~~v~s~~DhRiamalaia~l~a~g~~~I~~~~~v~ks----yp~f~~~l~~lGa 430 (441)
T 3slh_A 363 AAESLPDGVIIQGG--------TLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTS----FPNFVELANEVGM 430 (441)
T ss_dssp EEEEETTEEEEECC--------CCCCEEEECTTCHHHHHHHHHHHHHCSSCEEEECCGGGGGT----CTTHHHHHHHHTC
T ss_pred EEEEeCCEEEEECC--------CCCCCEEECCCCHHHHHHHHHHHHhCCCCEEEecccEecCc----hHHHHHHHHhCCC
Confidence 99999999999984 58999999999999999999999999999999999998643 9999999999999
Q ss_pred EEEE
Q 011947 406 TVEE 409 (474)
Q Consensus 406 ~i~~ 409 (474)
+++.
T Consensus 431 ~i~~ 434 (441)
T 3slh_A 431 NVKG 434 (441)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 9965
No 12
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=100.00 E-value=8.9e-44 Score=366.74 Aligned_cols=325 Identities=21% Similarity=0.255 Sum_probs=254.8
Q ss_pred EEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeC--CcceEE
Q 011947 30 KLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDF--AMKRAI 105 (474)
Q Consensus 30 ~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~--~~~~l~ 105 (474)
+++|+|||| ++|||+|+++ ..++.+.+.| .+.+||+..++++|++|||+|++.+ +..|++
T Consensus 113 ~l~~g~sgt-~~R~l~~~la---------------~~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~~ 176 (450)
T 3nvs_A 113 ELFLGNAGT-AMRPLAAALC---------------LGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLR 176 (450)
T ss_dssp EEECTTCHH-HHHHHHHHTT---------------SSBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEE
T ss_pred eEEccCccc-hHHHHHHHHh---------------cCCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeEE
Confidence 699999999 9999997655 3456777777 4799999999999999999999843 346899
Q ss_pred EEecCCCCCccccCCCcceEEecCchh-hhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCCC
Q 011947 106 VEGCGGLFPLAKQQTGEIELFLGNAGT-AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGT 183 (474)
Q Consensus 106 i~g~~~~~~~~~~s~~~~~i~~g~sg~-t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~~ 183 (474)
|+|.+ +... +..++...|++ ...+|+|++++ .++.++...+ .+.++||+++ +++|++||++|+..
T Consensus 177 I~g~~--l~gg-----~i~i~g~~sSq~~s~lLlAa~la-~g~t~I~~~~--~~~s~p~i~~t~~~L~~~Ga~i~~~--- 243 (450)
T 3nvs_A 177 IQGTG--LQAG-----TVTIDGSISSQFLTAFLMSAPLA-QGKVTIKIVG--ELVSKPYIDITLHIMEQFGVQVINH--- 243 (450)
T ss_dssp EECCC--CCSE-----EEEECCSSCTHHHHHHHHHGGGS-SSCEEEEESS--CCSSHHHHHHHHHHHHHTTCCCEEE---
T ss_pred EEcCC--cCce-----EEEeCCCCcHHHHHHHHHHHHHC-CCcEEEEeCC--CcCCchHHHHHHHHHHHCCCCEEec---
Confidence 99853 3332 22333222332 22467766655 3344444444 4568899998 99999999999874
Q ss_pred CCCcEEEecCCCCCC-eeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 184 NCPPVRINGKGGLPG-GKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 184 ~~~~i~I~~~~~~~~-~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
++.+++|+|.+++.+ .+|.|++|+|++ +.|++||++..++++|++++. .+.|.+..++++|++||++|+++++ .
T Consensus 244 g~~~i~I~g~~~l~~~~~~~v~~D~s~A--s~~l~aaal~~g~v~i~~~~~-~~~~~D~~i~~~L~~mGa~i~~~~~--~ 318 (450)
T 3nvs_A 244 DYQEFVIPAGQSYVSPGQFLVEGDASSA--SYFLAAAAIKGGEVKVTGIGK-NSIQGDIQFADALEKMGAQIEWGDD--Y 318 (450)
T ss_dssp TTTEEEECTTCCCBCCSEEECCBCHHHH--HHHHHHHHHHCSEEEEESCCT-TCSCGGGGHHHHHHHHTCEEEECSS--E
T ss_pred CCcEEEEcCCccccCCcceEecCCHHHH--HHHHHHHHhcCCeEEEccCCc-ccccchHHHHHHHHHcCCeEEEeCC--E
Confidence 234799998766765 499999999996 667777778788999998764 3445567788999999999999876 6
Q ss_pred EEEeCCCcccCCccee--ecCCchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCeEEEe
Q 011947 263 FFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVT 337 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~--~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~ 337 (474)
+++.+. +++ +.++. ..||..+ ++++++++++|+++|+|+..+|++ +| .++.++|++||++|++.+|.++|+
T Consensus 319 i~v~~~-~L~-g~~i~~~~~PD~~~--~l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~~~~d~i~I~ 394 (450)
T 3nvs_A 319 VIARRG-ELN-AVDLDFNHIPDAAM--TIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVIT 394 (450)
T ss_dssp EEEECC-CCB-CCEEECTTCTTTHH--HHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEE
T ss_pred EEEecC-CcC-cEEeecCCCcCHHH--HHHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEEEcCCEEEEe
Confidence 888764 565 55543 3456644 788888889999999999988887 55 789999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcC
Q 011947 338 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 404 (474)
Q Consensus 338 g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG 404 (474)
|.. +|+|.++++++|||++|+|+++|+.++ +++|+|++|+.+. ||+||+.|+++|
T Consensus 395 G~~-------~L~g~~v~~~~DhR~ama~aiaal~a~-~~~I~~~~~v~ks----yp~f~~~l~~lg 449 (450)
T 3nvs_A 395 PPT-------KLIHAAIDTYDDHRMAMCFSLVALSDT-PVTINDPKCTSKT----FPDYFDKFAQLS 449 (450)
T ss_dssp CCS-------SCCCCEECCTTCHHHHHHHHGGGGSSS-CEEEESGGGGGGT----CTTHHHHHHHHB
T ss_pred CCC-------CCCCCEEecCccHHHHHHHHHHHHhCC-CEEEECcCeeeCc----chhHHHHHHHhc
Confidence 863 689999999999999999999999875 5789999998654 999999999987
No 13
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=100.00 E-value=2.9e-44 Score=368.43 Aligned_cols=332 Identities=17% Similarity=0.220 Sum_probs=252.7
Q ss_pred ccceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC--c
Q 011947 26 QKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--M 101 (474)
Q Consensus 26 ~~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~--~ 101 (474)
.+...|||+|||| ++|||+++++..+ +.+.+.| .+..||++.++++|++|||+|++.++ .
T Consensus 86 ~~~~~i~~g~SGt-~mRll~g~la~~~---------------~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~~~~~ 149 (455)
T 3rmt_A 86 EPSDILDVGNSGT-TTRLILGILSTLP---------------FHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNL 149 (455)
T ss_dssp CCSSCEECTTCHH-HHHHHHHHHTTSS---------------SEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEHHHHTE
T ss_pred CCcceeecccccc-cHHHHHHHHHcCC---------------cEEEEeCCcccccCCHHHHHHHHHHCCCEEEEecCCCc
Confidence 4456799999999 9999998766443 4555665 67899999999999999999987642 4
Q ss_pred ceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeC
Q 011947 102 KRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 181 (474)
Q Consensus 102 ~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~ 181 (474)
.|++|+|.+ ++.. +..++..+|+.+..+|+|++++ ++.+++.+. ..+||+ ++++|++||++|+..+
T Consensus 150 ~Pl~i~g~~--l~g~-----~i~l~~~Ssq~~s~lLlAa~~a---~G~t~i~ep--~~s~~~--t~~~L~~~Ga~i~~~g 215 (455)
T 3rmt_A 150 TPLSIRGGQ--LKGI-----DFHSPVASAQMKSAILLAGLRA---EGKTSVTEP--AKTRDH--TERMLEAFGVNIEKDG 215 (455)
T ss_dssp EEEEEECCS--CBCC-----EEECSSCCHHHHHHHHHHHHTS---BSCEEEECS--SCCCCH--HHHHHHHTTCCEEEET
T ss_pred ccEEEEeCC--ccce-----EEEEccCcHHHHHHHHHHHHhc---CCCEEEECC--cCcHHH--HHHHHHHCCCCEEecC
Confidence 789999842 4332 2233333444555688887765 233445543 557765 6899999999998743
Q ss_pred CCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhc-CCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCce
Q 011947 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPL-ALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW 260 (474)
Q Consensus 182 ~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l-~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~ 260 (474)
..|+|+|.+++++.+|.||+|+|++ +.|+.||++ .+++++|+++... +.+ ..++++|++||++|++.++.
T Consensus 216 ----~~i~I~g~~~l~~~~~~V~~D~s~A--a~~l~aaai~~gg~v~i~~~~~~-~~~--~~il~~L~~mGa~i~~~~~~ 286 (455)
T 3rmt_A 216 ----LTVSIEGGQMLTGQHVVVPGDISSA--AFFLVAGAMVPHSRITLTNVGIN-PTR--AGILEVLKQMGATLAMENER 286 (455)
T ss_dssp ----TEEEECSCCCCBCCEEECCBCHHHH--HHHHHHHHHSTTEEEEEEEEECC-TTT--THHHHHHHHTTCEEEEEEEE
T ss_pred ----CEEEEcCCccccCCeeECCCCHHHH--HHHHHHHHhcCCCEEEECCCCCc-hhH--HHHHHHHHHcCCEEEEcCCc
Confidence 2599999878999999999999985 445556666 5678999987421 222 55899999999999986541
Q ss_pred -------eEEEEeCCCcccCCccee--ecC---CchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCC
Q 011947 261 -------DRFFIQGGQKYKSPGNAF--VEG---DASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGA 325 (474)
Q Consensus 261 -------~~i~i~~~~~l~~~~~~~--~~~---D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa 325 (474)
..++|.+. +++ +.++. ..| |. .+.+++++++++|+++|+|+.+.|+| +| .+++++|++||+
T Consensus 287 ~~~ge~~~~i~v~~~-~l~-~~~i~~~~~P~~~D~--~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa 362 (455)
T 3rmt_A 287 VQGGEPVADLTIETS-VLQ-GVEIGGDIIPRLIDE--IPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGA 362 (455)
T ss_dssp EETTEEEEEEEEECC-CCB-CCCEETTHHHHHGGG--HHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTC
T ss_pred ccCCccceEEEEecC-Cce-eEEEeCccCCchHHH--HHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCC
Confidence 02778764 455 44432 223 44 34788889999999999999988888 56 589999999999
Q ss_pred EEEEecCeEEEeCCCCCCCCCCCcceEE-EcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcC
Q 011947 326 KVTWTENSVTVTGPPRDPYGRKHLRAVD-VNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLG 404 (474)
Q Consensus 326 ~v~~~~~~i~i~g~~~~~~~~~~l~g~~-i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG 404 (474)
+|++.+|+++|+|.+ +++|.+ |++++|||++|+|+++++.++|+++|+|++|+.+ | ||+||+.|+++|
T Consensus 363 ~i~~~~d~l~I~G~~-------~l~g~~~v~s~~DhR~amal~iagL~a~g~~~I~~~~~v~k--s--yp~f~~~l~~Lg 431 (455)
T 3rmt_A 363 SIHATDDGMIIEGPT-------PLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTEAIAV--S--YPSFFDHLDRLK 431 (455)
T ss_dssp CEEEETTEEEECSCC-------CCBCSSEEECTTCHHHHHHHHHHHTTCBSCEEEECTHHHHH--H--CTTHHHHHHHHH
T ss_pred EEEEECCEEEEECCC-------CCCCCceecCCCCHHHHHHHHHHHHhCCCCEEEeCcceecC--c--chhHHHHHHHcc
Confidence 999999999999863 688888 9999999999999999999999999999999864 3 999999999999
Q ss_pred CEEEEeC
Q 011947 405 ATVEEGP 411 (474)
Q Consensus 405 ~~i~~~~ 411 (474)
++++...
T Consensus 432 ~~i~~~~ 438 (455)
T 3rmt_A 432 SEAENLY 438 (455)
T ss_dssp HHHHHHC
T ss_pred cceEEcc
Confidence 9987543
No 14
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=2.1e-42 Score=355.87 Aligned_cols=331 Identities=18% Similarity=0.204 Sum_probs=260.0
Q ss_pred cceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceE
Q 011947 27 KHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRA 104 (474)
Q Consensus 27 ~~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l 104 (474)
...++++++||| ++||++|+++ +.++.+.+.| .+.+||++.++++|++|||+|+.+ ..|+
T Consensus 86 ~~~~i~~g~sgt-s~R~l~~lla---------------~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~--~~p~ 147 (450)
T 2o0b_A 86 PGARVDCGLAGT-VLRFVPPLAA---------------LGSVPVTFDGDQQARGRPIAPLLDALRELGVAVDGT--GLPF 147 (450)
T ss_dssp TTCEEECTTCHH-HHHHHHHHHT---------------TSSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEECS--SSSE
T ss_pred Cceeeeeccchh-HHHHHHHHHh---------------cCCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEEcC--ceeE
Confidence 347899999999 9999998754 4455677777 489999999999999999999742 4799
Q ss_pred EEEecCCCCCccccCCCcceEEe-cCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCC
Q 011947 105 IVEGCGGLFPLAKQQTGEIELFL-GNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILG 182 (474)
Q Consensus 105 ~i~g~~~~~~~~~~s~~~~~i~~-g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~ 182 (474)
+|+|.+ .++.. +..++. -+|+.+..+|++++++ .++.++.+.|.+ ..++||+++ +++|++||++|+..
T Consensus 148 ~i~g~~-~l~g~-----~i~i~~d~Ssq~~salllAA~~~-~g~~~I~~~~~~-~~s~p~i~~t~~~L~~~Ga~I~~~-- 217 (450)
T 2o0b_A 148 RVRGNG-SLAGG-----TVAIDASASSQFVSGLLLSAASF-TDGLTVQHTGSS-LPSAPHIAMTAAMLRQAGVDIDDS-- 217 (450)
T ss_dssp EEECCS-CCCCE-----EEEECCTTCTHHHHHHHHHGGGS-TTCEEEEECSSC-CCCHHHHHHHHHHHHHTTCCEECC--
T ss_pred EEEecC-CCcCc-----EEEcCCCCCHHHHHHHHHHHHHc-CCCeEEEeCCCC-cCCCcHHHHHHHHHHHCCCeEEec--
Confidence 999742 24332 223432 2333345578877665 345677777642 458899777 99999999999742
Q ss_pred CCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeE
Q 011947 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 262 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~ 262 (474)
+...++|++ +++++.+|.|++|+|++ +.|+.||++++|+++|+++.. .+.+.++.+++.|++||++|+..++ .
T Consensus 218 -~~~~i~I~g-~~l~g~~~~v~~D~s~A--~~~laaaa~~~g~v~i~~v~~-~~~q~~~~i~~~L~~mGa~i~~~~d--~ 290 (450)
T 2o0b_A 218 -TPNRWQVRP-GPVAARRWDIEPDLTNA--VAFLSAAVVSGGTVRITGWPR-VSVQPADHILAILRQLNAVVIHADS--S 290 (450)
T ss_dssp -STTEEEECC-CCCCCCCEECCBCHHHH--HHHHHHHHHHTCEEEETTCCS-SCSSCHHHHHHHHHHTTCEEEEETT--E
T ss_pred -CCcEEEEEC-CCCcCceEEcCCCHHHH--HHHHHHHHhcCCeEEECCCCc-ccccchHHHHHHHHHcCCeEEEcCC--E
Confidence 222599998 48999999999999996 566666777889999998764 3556677899999999999999876 7
Q ss_pred EEEeCCCcccCCcceeecCCchhhHHHHHHHhccC--CeEEEeccCCCCcc-ch--hHHHHHHHHcCCEEEEecCeEEEe
Q 011947 263 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTG--GTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVT 337 (474)
Q Consensus 263 i~i~~~~~l~~~~~~~~~~D~~~a~~ll~~aa~~~--g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v~~~~~~i~i~ 337 (474)
++|++...++ +.++...+|.-.++.+++++++++ |+++|+|+.+.+++ +| .++.++|++||++|++.+|+++|+
T Consensus 291 i~v~~~~~l~-g~~i~~~~~~D~~p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~i~~~~d~~~I~ 369 (450)
T 2o0b_A 291 LEVRGPTGYD-GFDVDLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVIT 369 (450)
T ss_dssp EEEECCSCCC-CCEEECTTCGGGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEE
T ss_pred EEEecCCCcc-eeEEeCCCCHHHHHHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCeEEEECCEEEEE
Confidence 8888754465 555544444444568888898999 99999998877777 46 568999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHc-CCE
Q 011947 338 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKL-GAT 406 (474)
Q Consensus 338 g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~l-G~~ 406 (474)
|. +++|.+|++++|||++|+|+++++ +.|+++|+|++|+.+. ||+||+.|++| |++
T Consensus 370 g~--------~l~g~~v~s~~DhR~ama~~iagl-~~~~~~I~~~~~v~ks----yp~f~~~l~~l~Ga~ 426 (450)
T 2o0b_A 370 AT--------PLRPGIWRAYADHRMAMAGAIIGL-RVAGVEVDDIAATTKT----LPEFPRLWAEMVGPG 426 (450)
T ss_dssp CC--------CCCCEEECCTTCHHHHHHHHHHHT-TSTTEEESCGGGGGGT----CTTHHHHHHHHHC--
T ss_pred Cc--------CCcCCeEECCcHHHHHHHHHHHHH-cCCCEEEcccChhhCc----hHHHHHHHHhccCCC
Confidence 74 588999999999999999999999 7888999999999643 99999999999 998
No 15
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=2e-39 Score=332.82 Aligned_cols=323 Identities=19% Similarity=0.210 Sum_probs=248.9
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEe-C-Ccce
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEED-F-AMKR 103 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~-~-~~~~ 103 (474)
...+++++||| ++||++++++. ..+.+++.| .+..||++.++++|++|||+|++. + +..|
T Consensus 83 ~~~id~~~sgt-~~rll~a~la~---------------~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~~~~~g~~p 146 (427)
T 1rf6_A 83 QNALNMGNSGT-SIRLISGVLAG---------------ADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPP 146 (427)
T ss_dssp SSCEECTTCHH-HHHHHHHHGGG---------------CSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEE
T ss_pred cceeeccccch-HHHHHHHHHhc---------------CCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEEEcCCCcce
Confidence 45799999999 99999976542 235677776 468899999999999999999987 2 3357
Q ss_pred EEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCC
Q 011947 104 AIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGT 183 (474)
Q Consensus 104 l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~ 183 (474)
++|++.+ .++.. +..++.-+|..+..+|++++.+ ++.+++... ..+||+.. ++|++||++|+..+
T Consensus 147 i~i~~~~-~L~g~-----~i~~~~~ssq~~s~lllaA~~a---~G~t~I~~~--~~~~~~i~--~~L~~~Ga~i~~~~-- 211 (427)
T 1rf6_A 147 LRLKGTK-NLRPI-----HYELPIASAQVKSALMFAALQA---KGESVIIEK--EYTRNHTE--DMLQQFGGHLSVDG-- 211 (427)
T ss_dssp EEEECCT-TCCCC-----EEECSSCCHHHHHHHHHHHTTS---SEEEEEECS--SCCCCHHH--HHHHHTTCCCEEET--
T ss_pred EEEeccC-CCCce-----EEEeCCCCHHHHHHHHHHHHhc---CCCeEEEec--cCCHHHHH--HHHHHCCCCEEecC--
Confidence 9998731 23332 1122211223333466665554 456666654 56888887 99999999998653
Q ss_pred CCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCc-eEEEEccCCCCchhHHHHHHHHHHcCCEEEEe----C
Q 011947 184 NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERFGVFVEHS----D 258 (474)
Q Consensus 184 ~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~-~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~----~ 258 (474)
..++|+|.+++++.+|.+++|+|++ ++|++|+++++|+ ++|+++....+++ + +++.|++||++|++. +
T Consensus 212 --~~i~I~g~~~l~g~~~~v~~D~~~A--~~~~~Aa~~~~g~~v~i~~~~~~~~~~-~--~~~~L~~mGa~i~~~~~~~~ 284 (427)
T 1rf6_A 212 --KKITVQGPQKLTGQKVVVPGDISSA--AFWLVAGLIAPNSRLVLQNVGINETRT-G--IIDVIRAMGGKLEITEIDPV 284 (427)
T ss_dssp --TEEEEEECCCCBCCEEECCBCHHHH--HHHHHHHHHSTTEEEEEEEEECCTTTC-H--HHHHHHHTTCEEEEEEEETT
T ss_pred --CEEEEcCCcccCCCeEEcCCCHHHH--HHHHHHHHhCCCCEEEECCCCCCCChh-H--HHHHHHHcCCcEEEccccCC
Confidence 2599998767988899999999996 6677777778886 9999875223333 3 899999999999874 2
Q ss_pred ---ceeEEEEeCCCcccCCcce--eecC---CchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCEE
Q 011947 259 ---SWDRFFIQGGQKYKSPGNA--FVEG---DASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKV 327 (474)
Q Consensus 259 ---~~~~i~i~~~~~l~~~~~~--~~~~---D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~v 327 (474)
+ .+++++. .++ +.++ ...| |..+ .+++++++++|+++|+|+.+.|+| +| .+++++|++||++|
T Consensus 285 ~~~~--~i~v~~~-~l~-~~~i~~~~~p~~~D~~p--~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i 358 (427)
T 1rf6_A 285 AKSA--TLIVESS-DLK-GTEICGALIPRLIDELP--IIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADI 358 (427)
T ss_dssp TTEE--EEEEECC-CCB-CCEECTTSGGGTGGGHH--HHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCE
T ss_pred CCcc--eEEEeCC-CCC-cEEeccccCCChHHHHH--HHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEE
Confidence 3 5778753 454 4433 2334 6644 788889999999999999988888 46 56899999999999
Q ss_pred EEecCeEEEeCCCCCCCCCCCcceEEEcCCCCCcHHHHHHHHH-HhCCCCeEEecccccccccchhHHHHHHHHHHcCC
Q 011947 328 TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVA-LFADGPTAIRDVASWRVKETERMIAICTELRKLGA 405 (474)
Q Consensus 328 ~~~~~~i~i~g~~~~~~~~~~l~g~~i~~~~~~r~~~~lav~a-~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~ 405 (474)
++.+|+++|+|.. +++|.++++++|||++|+|++++ +.++|+++|+|++|+.+. ||+||+.|++||+
T Consensus 359 ~~~~d~~~I~g~~-------~l~g~~v~s~~DhR~ama~~ia~~l~a~g~~~I~~~~~v~~s----yp~f~~~l~~lg~ 426 (427)
T 1rf6_A 359 TPTADGMIIKGKS-------ALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTS----YPSFFDDLESLIH 426 (427)
T ss_dssp EEETTEEEEEECC-------CCCCEEEECTTCHHHHHHHHHHHHTCSSSCEEEETGGGGGGT----CTTHHHHHHHHSC
T ss_pred EEECCEEEEeCCC-------CCCCCeEECCccHHHHHHHHHHHHhcCCCcEEEcccCcccCc----chhHHHHHHHhhC
Confidence 9999999999863 68899999999999999999999 999999999999998643 9999999999986
No 16
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=100.00 E-value=2.6e-39 Score=335.12 Aligned_cols=351 Identities=18% Similarity=0.179 Sum_probs=244.2
Q ss_pred cCCCCchhhHHhhhhhccCCc-cccchhhhhhccCCCeeEEecCCCCHhHHHHHHHHHHcCCEEEEeC-CcceEEEEec-
Q 011947 33 CNPSERFPVRLLCRVLSLYPI-GFFFSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF-AMKRAIVEGC- 109 (474)
Q Consensus 33 ~~~Sgt~~~R~l~~~~~~~~~-~~~~~~~~~a~l~~g~~~i~~~l~~r~i~~~i~aL~~lGa~i~~~~-~~~~l~i~g~- 109 (474)
+++++| ++|||.|+++..+. .+.+ .|...|...++.||++.++++|++|||+|++.+ +..|+++.+-
T Consensus 102 ~~~~~t-s~~~l~~l~a~~~~~~~~l---------~G~~~l~~~~~~RPi~~~~~~L~~lGa~i~~~~~g~~p~~~~~l~ 171 (479)
T 4fqd_A 102 VGRIHG-SLYLLPALVSRNGVARLSA---------SGGCPIGEGPRGRPDEHLLDVMGRFGVTTRLTADGSVDLTAQRLT 171 (479)
T ss_dssp HTTCSG-GGGGHHHHHHHTSEEEECC---------------------CCCHHHHHHHHTTTCEEEECTTSCEEEECSSCC
T ss_pred hcccch-hHHHHHHHHhcCCCeEEEE---------eCCcccccCCCCCChHHHHHHHHHCCCEEEeccCCceEEEEcCcc
Confidence 458899 99999998775442 2222 222322222339999999999999999999865 3456654111
Q ss_pred CCCCCccccCCCcceEEecC--chhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCCCCCC
Q 011947 110 GGLFPLAKQQTGEIELFLGN--AGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCP 186 (474)
Q Consensus 110 ~~~~~~~~~s~~~~~i~~g~--sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~~~~~ 186 (474)
++.+..++.|+ .+||.++. .+.+-|+|++++++ ++.+++.+ ..+.|+..+ +++|++||++|+..++ .
T Consensus 172 g~~i~l~~~sS-SSQfiS~lq~v~~t~~lLlaa~la---~G~t~I~~---~~~~pdi~~Tl~~L~~~Ga~I~~~~~---~ 241 (479)
T 4fqd_A 172 PCTIDMLDYTR-NKALMSGPCYSGAVKTALLMGAVT---HGTTTLQH---PYLKPDVTDMVTVLRDLGADIEFAGP---E 241 (479)
T ss_dssp CCEEEGGGGCS-BTTTTBCTTHHHHHHHHHHHHHTS---EEEEEEES---CCCSHHHHHHHHHHHHHTCCEEEEET---T
T ss_pred ccEEEeccccc-hHHhhccchhHHHHHHHHHHHHhC---CCcEEEec---CCCChHHHHHHHHHHHCCCeEEEcCC---C
Confidence 12222211111 23554432 35566788887765 45667775 335666666 9999999999987532 2
Q ss_pred cEEEecC---CCCCCeeEEEcCCCCHHHHHHHHHHhhc-CCCceEEEEccCCCC-chhHHHHHHHHHHcCCEEEEeCcee
Q 011947 187 PVRINGK---GGLPGGKVKLSGKLSSQYLTALLMAAPL-ALGNVEIEIIDKLIS-VPYVEMTLKLMERFGVFVEHSDSWD 261 (474)
Q Consensus 187 ~i~I~~~---~~~~~~~~~i~gd~Ss~~~sall~aa~l-~~g~~~I~~~~~~~s-~~~~~~~~~~L~~~G~~i~~~~~~~ 261 (474)
.++|+|. +.+++.+|.|++|+|++ +.|++|+++ .+++++|++.+. .+ ++.+..++++|++||++|++.++
T Consensus 242 ~i~I~g~g~~~~l~~~~~~V~~D~s~A--g~fl~aaal~~gg~v~l~g~~~-~s~~~~~~~i~~~L~~mGa~i~~~~~-- 316 (479)
T 4fqd_A 242 TWVIHGRGPESLHRPVDVTLIPDLIEV--VTWICAGVLLADEPLRITGPGI-DRAVHALAPEFDLLDRMGVRVDVGAD-- 316 (479)
T ss_dssp EEEEEEECGGGCCCCEEEECCBCHHHH--HHHHHHHHHHBSSCEEEECTTH-HHHHHHTHHHHHHHHHHTCCEEECSS--
T ss_pred EEEEeCCCCCCccCCCceEeCCChHhH--HHHHHHHHHcCCCeEEEeCCCC-ccccCchHHHHHHHHHCCCEEEEcCC--
Confidence 5999986 57889999999999996 445556666 678999987642 22 23457899999999999998776
Q ss_pred EEEEeC-CCcccCCcceee-----cCCchhhHHHHHHHhccCCeEEEe-ccCCCCccchhHHHHHHHHcCCEEEEecCeE
Q 011947 262 RFFIQG-GQKYKSPGNAFV-----EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 334 (474)
Q Consensus 262 ~i~i~~-~~~l~~~~~~~~-----~~D~~~a~~ll~~aa~~~g~~~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i 334 (474)
.++|++ ...++ +.++.. ++|..+ .+++++++++|+++|+ ++..+|+ .+.++|++||++|++.+|.+
T Consensus 317 ~i~v~~~~~~L~-g~~i~~~~~~~~~D~~p--~l~~~a~~A~G~t~I~e~i~e~R~----~~~~eL~~lGa~i~~~~d~~ 389 (479)
T 4fqd_A 317 EVTAHPLTKPLR-PVEFTAMSRGVFSDSQP--FLALLGAYAEGPTYIREAVWEHRF----GFAPELEALGIRTAVDDTVL 389 (479)
T ss_dssp EEEECCCSSCBC-CCEEEECTTSBCTTTHH--HHHHHHTTBSEEEEEEESSSSSCC----TTHHHHHHHTCCEEEETTEE
T ss_pred eEEEEecCCCCC-CeEEecCCCCCCHHHHH--HHHHHHHhCCCcEEEEcCCcccHH----HHHHHHHHCCCeEEEECCEE
Confidence 788887 34565 555543 467755 7788888899999996 5444554 47899999999999999999
Q ss_pred EEeCCCCCCCCCCCc--ceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeCC
Q 011947 335 TVTGPPRDPYGRKHL--RAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPD 412 (474)
Q Consensus 335 ~i~g~~~~~~~~~~l--~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~d 412 (474)
+|+|.. ++ ++.+|++ .|||++|+++++|+.++|+++|+|++|+.+ | ||+||+.|++||++++..++
T Consensus 390 ~I~g~~-------~l~~~g~~V~~-~DhR~Ama~~vaal~~~g~i~I~~~~~v~k--s--yp~f~~~L~~lGa~I~~~~~ 457 (479)
T 4fqd_A 390 RVDGPC-------PPHRPGTDLRA-TDLRAAAVLLLAALAVPGRTTLRNHHHLAR--G--YRDLVEDLVKLGADIRHTTA 457 (479)
T ss_dssp EEEESC-------CCCCCSEEEEC-CSHHHHHHHHHHHTTSSSEEEEECGGGGGG--T--CSCHHHHHHHTTCEEEEEEC
T ss_pred EEeCCC-------cccCCCcEEeC-CCHHHHHHHHHHHHhCCCeEEEcCcccccC--C--HHHHHHHHHhCCCEEEEecC
Confidence 999863 57 7889999 799999999999999999999999998753 3 99999999999999998766
Q ss_pred EEEEeCCCCcccceeec
Q 011947 413 YCVITPPEKLKVAAIDT 429 (474)
Q Consensus 413 ~l~I~g~~~l~~~~v~~ 429 (474)
.. +.| .+..++-++.
T Consensus 458 ~~-~~~-~~~~~~~~~~ 472 (479)
T 4fqd_A 458 PD-VRP-KPPAGAGVDP 472 (479)
T ss_dssp C----------------
T ss_pred ce-ecC-CCccccCCCc
Confidence 55 443 3444544543
No 17
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=100.00 E-value=3.4e-37 Score=318.24 Aligned_cols=334 Identities=18% Similarity=0.199 Sum_probs=248.2
Q ss_pred ceEEEcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCC-cceE
Q 011947 28 HRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA-MKRA 104 (474)
Q Consensus 28 ~~~i~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~-~~~l 104 (474)
...+|+++||| ++||++++++ ...+.+++.| .+..||++.++++|++|||+|++.++ ..|+
T Consensus 86 ~~~~d~~~sgt-~~r~l~~~l~---------------~~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~~~~g~~Pi 149 (445)
T 2pqc_A 86 EAPLDFGNAAT-GCRLTMGLVG---------------VYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPV 149 (445)
T ss_dssp SSCEECTTCHH-HHHHHHHHHH---------------TSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEE
T ss_pred CcccchhhhhH-HHHHHHHHHh---------------cCCcEEEEECCccCCCCChHHHHHHHHHCCCEEEeccCCcccE
Confidence 35789999999 9999997543 2245777777 45789999999999999999998653 3689
Q ss_pred EEEecCCCCCccccCCCcceEEecCchh-hhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeC-C
Q 011947 105 IVEGCGGLFPLAKQQTGEIELFLGNAGT-AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL-G 182 (474)
Q Consensus 105 ~i~g~~~~~~~~~~s~~~~~i~~g~sg~-t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~-~ 182 (474)
+|++.+ .+... +..+. +.|.. ...+|++++.+ ++.+++.+. +.++|+.. ++|++||++|+... +
T Consensus 150 ~i~~~~-~l~g~-----~i~~~-~~ssq~~~~lllaa~~a---~G~t~I~~~--~~~~~~~~--~~L~~~Ga~I~~~~~~ 215 (445)
T 2pqc_A 150 TLRGPK-TPTPI-----TYRVP-MASAQVKSAVLLAGLNT---PGITTVIEP--IMTRDHTE--KMLQGFGANLTVETDA 215 (445)
T ss_dssp EEECCS-SCCCC-----EEECS-SSCHHHHHHHHHHHHTS---SSEEEEEES--SCCCCHHH--HHHHHTTCCEEEEECT
T ss_pred EEeCCC-CCCCe-----EEEeC-CCCHHHHHHHHHHHhhC---CCceEEEEc--cCCHHHHH--HHHHHCCCEEEEecCC
Confidence 998741 13322 12232 33323 33366666554 445555553 66888654 99999999997541 1
Q ss_pred CCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCc-eEEEEccCCCCchhHHHHHHHHHHcCCEEEEe----
Q 011947 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERFGVFVEHS---- 257 (474)
Q Consensus 183 ~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~-~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~---- 257 (474)
.+...++|+|.+++++.++.+++|+|++ ++|++|++++++. ++|++... ...+.+ +++.|++||++|++.
T Consensus 216 ~g~~~~~I~g~~~l~~~~~~v~~D~s~a--~~~l~aa~~~~g~~v~i~~~~~-~~~~~~--~~~~L~~mGa~i~~~~~~~ 290 (445)
T 2pqc_A 216 DGVRTIRLEGRGKLTGQVIDVPGDPSST--AFPLVAALLVPGSDVTILNVLM-NPTRTG--LILTLQEMGADIEVINPRL 290 (445)
T ss_dssp TSCEEEEEETTCCCBCCEEECCBCHHHH--HHHHHHHHHSTTCEEEEEEEEC-CGGGCH--HHHHHHHHTCEEEEEEEEE
T ss_pred CCccEEEEeCCccccCceeEcCCCHHHH--HHHHHHHHHCCCCEEEECCCCC-CCCcch--HHHHHHHcCCeEEEccccc
Confidence 2223589998767888899999999986 6677777777777 99998752 233333 899999999999972
Q ss_pred -Cce--eEEEEeCCCcccCCcceee--cC---CchhhHHHHHHHhccCCeEEEeccCCCCcc-ch--hHHHHHHHHcCCE
Q 011947 258 -DSW--DRFFIQGGQKYKSPGNAFV--EG---DASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAK 326 (474)
Q Consensus 258 -~~~--~~i~i~~~~~l~~~~~~~~--~~---D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~-~d--~~~~~~L~~mGa~ 326 (474)
+.. ..++|++. .++ +.++.. .| |.. +.+++++++++|+++|+|+.+.+++ +| .+++++|++||++
T Consensus 291 ~~g~~~~~i~v~~~-~l~-~~~i~~~~~p~~~D~~--p~l~~~a~~a~G~s~i~~~~~lr~kEsdRi~~~~~eL~~~Ga~ 366 (445)
T 2pqc_A 291 AGGEDVADLRVRSS-TLK-GVTVPEDRAPSMIDEY--PILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVD 366 (445)
T ss_dssp ETTEEEEEEEEECC-CCB-CCEECGGGGGGTGGGH--HHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCE
T ss_pred cCCCccCcEEEeCC-CCC-ceEeccccCCchHHHH--HHHHHHHHhCCCcEEEEcccccccccchHHHHHHHHHHHCCCE
Confidence 211 25788764 455 454432 22 443 3788888899999999999887888 46 5688999999999
Q ss_pred EEEecCeEEEeCCCCCCCCCC-Cc--ce-EEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHH
Q 011947 327 VTWTENSVTVTGPPRDPYGRK-HL--RA-VDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRK 402 (474)
Q Consensus 327 v~~~~~~i~i~g~~~~~~~~~-~l--~g-~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~ 402 (474)
|++.+|.++|+|... . ++ ++ .++++++|||++|+|+++++.++|+++|+|++|+.+. ||+||+.|++
T Consensus 367 i~~~~d~~~I~g~~~-----~~~l~~~~~~~v~~~~DhR~ama~~ia~l~~~g~~~I~~~~~v~~~----yp~f~~~l~~ 437 (445)
T 2pqc_A 367 CDEGETSLVVRGRPD-----GKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATS----FPEFMDLMAG 437 (445)
T ss_dssp EEECSSCEEEECCTT-----CTTCSCTTCCEECCTTCHHHHHHHHHHHTTSSSCEEESCCTTGGGT----CTTHHHHHHH
T ss_pred EEEcCCEEEEeCCCC-----CCccccCCCceEECCCcHHHHHHHHHHHhcCCCCEEEcccchhcCc----chHHHHHHHH
Confidence 999999999998510 0 24 55 7999999999999999999999999999999998532 9999999999
Q ss_pred cCCEEEE
Q 011947 403 LGATVEE 409 (474)
Q Consensus 403 lG~~i~~ 409 (474)
||++++.
T Consensus 438 lGa~i~~ 444 (445)
T 2pqc_A 438 LGAKIEL 444 (445)
T ss_dssp HTCEEEE
T ss_pred hcCeEEe
Confidence 9999875
No 18
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=100.00 E-value=3.1e-37 Score=318.06 Aligned_cols=315 Identities=21% Similarity=0.233 Sum_probs=241.2
Q ss_pred CchhhH----HhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecC
Q 011947 37 ERFPVR----LLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG 110 (474)
Q Consensus 37 gt~~~R----~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~ 110 (474)
.+ ++| |+.|+++.. ..+.+.+.| .+..||++.++++|++|||+|++.++ .+.+++.
T Consensus 113 ~~-~~Ras~l~l~~l~a~~--------------~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g--~~~i~~~- 174 (454)
T 3r38_A 113 VR-KMRASIVVMGPLLART--------------GSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENG--YIEATAE- 174 (454)
T ss_dssp HH-HCGGGGGGHHHHHHHH--------------SEEEEECCCCCSSSSCCSHHHHHHHHHTTCEEEEETT--EEEEECS-
T ss_pred hh-ccchHHHHHHHHHhCC--------------CCeEEEeCCCcccccCCHHHHHHHHHHCCCEEEecCC--EEEEEEc-
Confidence 55 788 777654422 223445554 78999999999999999999998654 3556653
Q ss_pred CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCCh-hhHHHHHHhCCCEEEeeCCCCCCcEE
Q 011947 111 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPI-GDLVTGLKQLGADVDCILGTNCPPVR 189 (474)
Q Consensus 111 ~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~-~~l~~~L~~~G~~v~~~~~~~~~~i~ 189 (474)
.++.. +..++..+++.+.++|++++++ ++.+++.+. .++|+ .+++++|++||++|+.. +..+++
T Consensus 175 -~l~g~-----~~~l~~~S~q~~s~lLlAa~la---~G~t~I~~~---~~~p~i~~t~~~L~~~Ga~I~~~---~~~~i~ 239 (454)
T 3r38_A 175 -KLVGA-----KVYLDFPSVGATQNIMMAATLA---EGTTVIENV---AREPEIVDLANFLNQMGARVIGA---GTEVIR 239 (454)
T ss_dssp -SCBCC-----EEECSSCCHHHHHHHHHHHTTS---BSEEEEESC---CCCHHHHHHHHHHHHTTCCEECT---TSSEEE
T ss_pred -CccCc-----EEEecCCCHHHHHHHHHHHhcC---CCcEEEEcC---CCCcHHHHHHHHHHHCCCCEEEC---CCeEEE
Confidence 24333 2345555666777899987765 456677763 24555 44599999999999853 334699
Q ss_pred EecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCC
Q 011947 190 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 269 (474)
Q Consensus 190 I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~ 269 (474)
|+|.+++++.++.+++|+|++ +.|++|+++++++++|+++. ..+.+.++++|++||++|++.++ .++|++.+
T Consensus 240 I~g~~~l~~~~~~v~~D~s~A--~~~l~aaal~gg~v~i~g~~----~~~~~~i~~~L~~mGa~i~~~~~--~i~V~g~~ 311 (454)
T 3r38_A 240 IEGVKELTATEHSIIPDRIEA--GTFMIAAAITGGNVLIEDAV----PEHISSLIAKLEEMGVQIIEEEN--GIRVIGPD 311 (454)
T ss_dssp EECCSCEECCEEECCBCHHHH--HHHHHHHHHTTCEEEEESCC----GGGGHHHHHHHHHTTCEEEEC----CEEEECCS
T ss_pred EecCccccccccccCCChhHH--HHHHHHHHHcCCcEEEcCCC----chHHHHHHHHHHHCCCEEEecCC--eEEEEECC
Confidence 999767888899999999985 55666777788888888643 23567899999999999998775 68898755
Q ss_pred cccCCcceee------cCCchhhHHHHHHHhccCCeEEEe-ccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCCC
Q 011947 270 KYKSPGNAFV------EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 342 (474)
Q Consensus 270 ~l~~~~~~~~------~~D~~~a~~ll~~aa~~~g~~~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~~ 342 (474)
+++ +.++.. |.|+++ .+++++++++|+++|+ ++.++|++ ..++|++||++|++.+|.++|+|..
T Consensus 312 ~L~-g~~i~~~~~p~~p~D~~~--~l~~laa~A~G~t~i~e~i~~~R~~----~~~~L~~mGa~i~~~~d~l~I~G~~-- 382 (454)
T 3r38_A 312 KLK-AVDVKTMPHPGFPTDMQS--QMMVIQMLSEGTSIMTETVFENRFM----HVEEMRRMNADMKIEGHSVIISGPA-- 382 (454)
T ss_dssp SCC-CCCEEBCSTTSBCGGGHH--HHHHHHHHSSSEEEEECSSCTTCCT----THHHHHHTTCCEEEETTEEEEECSC--
T ss_pred Ccc-ceEEecccCCCCcccHHH--HHHHHHHhcCCCEEEEcCccccHHH----HHHHHHhCCCEEEEECCEEEEeCCC--
Confidence 676 566542 237766 6777778889999998 46666765 3589999999999999999999863
Q ss_pred CCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeC
Q 011947 343 PYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGP 411 (474)
Q Consensus 343 ~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~ 411 (474)
+++|.++++ .|||++|+++++|+.++|+++|+|++++.+. ||+||+.|++||+++++.+
T Consensus 383 -----~l~g~~v~~-~DhR~Ama~~vaal~a~G~~~I~~~~~v~~s----~p~f~~~L~~lGa~I~~~~ 441 (454)
T 3r38_A 383 -----KLQGAEVAA-TDLRAAAALILAGLVADGYTQVTELKYLDRG----YNNFHGKLQALGADVERVD 441 (454)
T ss_dssp -----CCBCCEEEC-CSHHHHHHHHHHHHHSBSEEEEECTHHHHTT----CSSHHHHHHHTTCEEEEEC
T ss_pred -----CceeeEEec-CCHHHHHHHHHHHHhCCCcEEEeCCccccCC----hhHHHHHHHhCCCEEEEec
Confidence 689999999 7999999999999999999999999988543 9999999999999998754
No 19
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=100.00 E-value=1.6e-36 Score=310.87 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=238.3
Q ss_pred cCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecC
Q 011947 33 CNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG 110 (474)
Q Consensus 33 ~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~ 110 (474)
+.++++ ++||+.++++. ..+..+.+.| .+..||++.++++|++|||+|+++++ .+.+++.+
T Consensus 87 ~~~~ra-s~~l~~alla~--------------~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~~~g--~~~v~~~~ 149 (419)
T 1ejd_A 87 VKTMRA-SIWALGPLVAR--------------FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEG--YVKASVNG 149 (419)
T ss_dssp HTTCGG-GGGGHHHHHHH--------------HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETT--EEEEECSS
T ss_pred hhhhhH-HHHHHHHHhhc--------------CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEEcCC--EEEEEEcC
Confidence 556667 78887754331 1222444554 57899999999999999999998654 35555432
Q ss_pred CCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCCCCCCcEE
Q 011947 111 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVR 189 (474)
Q Consensus 111 ~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~~~~~~i~ 189 (474)
.++.. +..++..++..+..+|++++.+ ++.+++.+ ..++|+.++ +++|++||++|+... ...++
T Consensus 150 -~L~g~-----~i~~~~~s~~~~~~ll~aa~~a---~G~t~I~~---~~~e~~i~~t~~~L~~~Ga~i~~~~---~~~i~ 214 (419)
T 1ejd_A 150 -RLKGA-----HIVMDKVSVGATVTIMSAATLA---EGTTIIEN---AAREPEIVDTANFLVALGAKISGQG---TDRIT 214 (419)
T ss_dssp -SCBCC-----EEECSSCCHHHHHHHHHHHTTS---BSEEEEET---CCCCHHHHHHHHHHHHTTCEEECTT---SSEEE
T ss_pred -Cccce-----EEecCCCCHHHHHHHHHHHhcC---CCcEEEEe---CCCCchHHHHHHHHHHCCCEEEEcc---CCEEE
Confidence 23332 1122211223344466665554 45566776 346788887 999999999998532 22599
Q ss_pred EecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeC-C
Q 011947 190 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG-G 268 (474)
Q Consensus 190 I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~-~ 268 (474)
|+|.+++++.++.+++|+|++ ++|++|+++++++++|++.+. .+ + ..+++.|++||++|++.++ .++|++ .
T Consensus 215 I~g~~~l~g~~~~v~~D~s~A--~~~~~aa~~~~g~v~i~~~~~-~~--~-~~~~~~L~~mGa~i~~~~~--~i~v~~~~ 286 (419)
T 1ejd_A 215 IEGVERLGGGVYRVLPDRIET--GTFLVAAAISGGKIVCRNAQP-DT--L-DAVLAKLREAGADIETGED--WISLDMHG 286 (419)
T ss_dssp EECCSCBCCEEEECCBCHHHH--HHHHHHHHTTTCEEEEESCCG-GG--C-HHHHHHHHHTTCEEEECSS--EEEEECTT
T ss_pred EeCCCcccccEEEeeCCHHHH--HHHHHHHHhcCCeEEEeCcCc-cc--H-HHHHHHHHHCCCEEEEcCC--EEEEEecC
Confidence 998768999999999999986 566666667788899987652 22 2 4689999999999998765 788876 2
Q ss_pred CcccCCcceee------cCCchhhHHHHHHHhccCCeEEEe-ccCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCC
Q 011947 269 QKYKSPGNAFV------EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 341 (474)
Q Consensus 269 ~~l~~~~~~~~------~~D~~~a~~ll~~aa~~~g~~~i~-g~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~ 341 (474)
..++ +.++.. |.|..+ .+++++++++|+++|+ ++.++|++ .+++|++||++|++.+|+++|+|..
T Consensus 287 ~~l~-~~~i~~~~~p~~~~D~~p--~la~la~~a~g~s~i~~~i~~~R~~----~~~eL~~lG~~i~~~~d~~~I~g~~- 358 (419)
T 1ejd_A 287 KRPK-AVTVRTAPHPAFPTDMQA--QFTLLNLVAEGTGVITETIFENRFM----HVPELIRMGAHAEIESNTVICHGVE- 358 (419)
T ss_dssp CCCB-CCCEECCSTTSCCGGGHH--HHHHHHHTSBSEEEEECCSCSSCCT----HHHHHHHTTCEEEEETTEEEEECCS-
T ss_pred CCcc-ceEEeCCCCCCCcHHHHH--HHHHHHHhCCCcEEEEccchHhHHH----HHHHHHHCCCEEEEECCEEEEeCCC-
Confidence 3455 444432 126655 7888899999999999 68888887 4799999999999999999999863
Q ss_pred CCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEe
Q 011947 342 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEG 410 (474)
Q Consensus 342 ~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~ 410 (474)
+++|.++++ +|||++|+|+++++.++|+++|+|++|+.+ | ||+||+.|++||++++..
T Consensus 359 ------~l~g~~v~~-~DhR~ama~~ia~l~~~g~~~I~~~~~v~~--s--yp~f~~~l~~lg~~i~~~ 416 (419)
T 1ejd_A 359 ------KLSGAQVMA-TDLRASASLVLAGCIAEGTTVVDRIYHIDR--G--YERIEDKLRALGANIERV 416 (419)
T ss_dssp ------CCBCCEECC-SSHHHHHHHHHHHHHSBEEEEECCTHHHHH--H--SSSHHHHHHTTTCEEEEE
T ss_pred ------CCcCCEEeC-CcHHHHHHHHHHHhcCCCCEEECCcCeeeC--c--CccHHHHHHHhCCEEEEe
Confidence 588899998 699999999999999999999999999864 3 999999999999998753
No 20
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=100.00 E-value=1.8e-36 Score=310.74 Aligned_cols=319 Identities=18% Similarity=0.175 Sum_probs=241.6
Q ss_pred EcCCCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEec--CCCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEec
Q 011947 32 YCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 109 (474)
Q Consensus 32 ~~~~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~--~l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~ 109 (474)
++++++| ++||+.|+++..+. +.+.+.| .+..||++.++++|++|||+|+++++..|+++ .
T Consensus 95 ~~~~~rt-s~~~l~~l~a~~~~--------------~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g~~~i~~--~ 157 (425)
T 2yvw_A 95 IIRRMRA-SVLSLGPLLGRFGR--------------AVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGYVYVNL--K 157 (425)
T ss_dssp HHHHCGG-GGGGHHHHHHHHSE--------------EEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEETTEEEEEC--S
T ss_pred hhcccch-HHHHHHHHhccCCc--------------EEEEECCCcccccCCHHHHHHHHHHCCCEEEecCCEEEEEe--c
Confidence 6789999 99999987664332 2344444 78999999999999999999987544344443 2
Q ss_pred CCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCCCCcCCCChhhH-HHHHHhCCCEEEeeCCCCCCcE
Q 011947 110 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPV 188 (474)
Q Consensus 110 ~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~~~l~~rp~~~l-~~~L~~~G~~v~~~~~~~~~~i 188 (474)
.++.. +..++..+++.+.++|++++++ ++.+++.+ ..++|+.++ +++|++||++|+..++ ..+
T Consensus 158 --~l~g~-----~i~~~~~S~~~~s~lllaa~la---~g~t~i~~---~~~~~~i~~t~~~L~~~Ga~i~~~~~---~~i 221 (425)
T 2yvw_A 158 --EKRRV-----HFKFDLVTVTGTENALLYLASV---PEESILEN---IALEPEVMDLIEVLKKMGAHVKVEGR---SAY 221 (425)
T ss_dssp --SCCCC-----EEECSSCCHHHHHHHHHHHTTC---SSEEEEES---CCCCHHHHHHHHHHHHTTCEEEEETT---EEE
T ss_pred --Cccce-----EEecccccHHHHHHHHHHHHhc---CCCEEEeC---CCCCchHHHHHHHHHHCCCeEEEcCC---EEE
Confidence 23332 1233334555566788887765 34566775 347788777 9999999999986421 147
Q ss_pred EEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCC
Q 011947 189 RINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG 268 (474)
Q Consensus 189 ~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~ 268 (474)
|+|.+.+++.++.+++|+|++ +.|++|+++++|+++|++.. .+....++++|++||++|++.++ .++|++.
T Consensus 222 -I~g~~~l~~~~~~v~~D~s~A--~t~l~aaal~~g~v~l~g~~----~~~~~~l~~~L~~mGa~i~~~~~--~i~i~~~ 292 (425)
T 2yvw_A 222 -VKGSENLKGFTHSVIPDRIEA--GTFMVGAVLTDGEILLENAR----INHLRAVVEKLKLIGGEVVEENG--NLRVFRK 292 (425)
T ss_dssp -EECCSSCCCCEEECCBCHHHH--HHHHHHHHHTTCEEEEESCC----GGGCHHHHHHHHHHTEEEEEETT--EEEEEEC
T ss_pred -EeCCCccCCccccccCchhHH--HHHHHHHHhCCCcEEEeCCC----chHHHHHHHHHHHCCCEEEEcCC--EEEEEec
Confidence 888657888899999999986 55777777788899998753 23455789999999999998765 6888864
Q ss_pred CcccCCcceee------cCCchhhHHHHHHHhccCCeEEEec-cCCCCccchhHHHHHHHHcCCEEEEecCeEEEeCCCC
Q 011947 269 QKYKSPGNAFV------EGDASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 341 (474)
Q Consensus 269 ~~l~~~~~~~~------~~D~~~a~~ll~~aa~~~g~~~i~g-~~~~~~~~d~~~~~~L~~mGa~v~~~~~~i~i~g~~~ 341 (474)
.+++ +.++.. +.|.++ .+++++++++|+++|++ +.+++. ..+++|++||++|++.+|.++|+|..
T Consensus 293 ~~L~-g~~i~~~~~p~~p~d~~~--~~~~aa~~a~G~t~I~~~~~e~r~----~~~~~L~~~Ga~i~~~~d~l~I~g~~- 364 (425)
T 2yvw_A 293 ESLR-ACDIETQVYPGFPTDMQA--QFMALLSVAKGKSRIKENIFEHRF----HHAQELNRLGANITVRGNTAYVEGVE- 364 (425)
T ss_dssp SCCB-CCCEEBCSTTSBCHHHHH--HHHHHHTTSBSEEEEECSSCTTCC----HHHHHHHTTTCCEEEETTEEEEECCS-
T ss_pred CCcc-ceEEeCCCCCCCcccHHH--HHHHHHHHCCCeEEEEcCcHHHHH----HHHHHHHhCCCEEEEECCEEEEeCCC-
Confidence 3565 555443 125554 68888888999999996 544443 46899999999999999999999852
Q ss_pred CCCCCCCcceEEEcCCCCCcHHHHHHHHHHhCCCCeEEecccccccccchhHHHHHHHHHHcCCEEEEeC
Q 011947 342 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGP 411 (474)
Q Consensus 342 ~~~~~~~l~g~~i~~~~~~r~~~~lav~a~~a~g~~~I~~~~~~r~kesdR~~~~~~~L~~lG~~i~~~~ 411 (474)
+++|.++.. .|||++|+++++++.++|+++|+|+.++.. + ||+|++.|++||++++...
T Consensus 365 ------~l~g~~v~~-~D~r~A~~~~~aal~a~g~v~I~~~~~~~r--~--~p~f~~~L~~lGa~I~~~~ 423 (425)
T 2yvw_A 365 ------RLYGSEVYS-TDLRASASLVLAGLVAQGETVVRDVYHLDR--G--YEKLEEKLKKLGADIERVS 423 (425)
T ss_dssp ------CCBCCEEEC-CCTTTTHHHHHHHHHSBSEEEEECTHHHHH--H--CSSHHHHHHHTTCCEEEEC
T ss_pred ------CCcCCeecC-CcHHHHHHHHHHHHhCCCcEEEeCceeecC--c--hHHHHHHHHHcCCeEEEec
Confidence 588888887 599999999999999999999999987532 2 9999999999999998653
No 21
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=91.55 E-value=5.4 Score=38.76 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=75.1
Q ss_pred CCCchhhHHhhhhhccCCccccchhhhhhccCCCeeEEecC------CCC-HhHHHHHHHHHHc-CCEEEEeCCc-ceEE
Q 011947 35 PSERFPVRLLCRVLSLYPIGFFFSLPSLSLSFQGTTVVDNL------LSS-EDIHHMLDALKKL-GLNVEEDFAM-KRAI 105 (474)
Q Consensus 35 ~Sgt~~~R~l~~~~~~~~~~~~~~~~~~a~l~~g~~~i~~~------l~~-r~i~~~i~aL~~l-Ga~i~~~~~~-~~l~ 105 (474)
+-|---+|.-+. +|+++..+++|+|. +.- +.-...++++.++ |++++..+-+ ..++
T Consensus 33 EGGGQ~lR~ala---------------LS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~ 97 (358)
T 3tut_A 33 EGGGQILRSALS---------------LSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLL 97 (358)
T ss_dssp TCSTHHHHHHHH---------------HHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEE
T ss_pred cCchHHHHHHHH---------------HHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEE
Confidence 334447887763 67788889999983 222 2233335555554 8888865432 3576
Q ss_pred EEecCCCCCccccCCCcceEEecCchhhh---HHHHHHHHhcCCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCEE
Q 011947 106 VEGCGGLFPLAKQQTGEIELFLGNAGTAM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADV 177 (474)
Q Consensus 106 i~g~~~~~~~~~~s~~~~~i~~g~sg~t~---r~L~a~~~~~~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~v 177 (474)
..+. .+... +..++++.+|+.. +.++++++..+.+.+++++|...-. +++++.+ +-+|++||+++
T Consensus 98 f~PG--~i~gg-----~~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~ 170 (358)
T 3tut_A 98 FRPG--TVRGG-----DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQ 170 (358)
T ss_dssp EECC--CCCCC-----EEEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCE
T ss_pred EECC--CccCc-----eEEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 6653 23332 3578888777643 4555555544678889999865433 4454433 55689999976
Q ss_pred Ee
Q 011947 178 DC 179 (474)
Q Consensus 178 ~~ 179 (474)
+.
T Consensus 171 ~l 172 (358)
T 3tut_A 171 QT 172 (358)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 22
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=91.23 E-value=2.6 Score=40.99 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=69.9
Q ss_pred HHHHHHhccCCeEEEeccCCCCccc---h--hHHHHHHHHc-CCEEEEec---CeEEEeCCCCCCCCCCCcceE--EEcC
Q 011947 288 YFVAGAAVTGGTVTVEGCGTSSLQG---D--VKFAEVLEKM-GAKVTWTE---NSVTVTGPPRDPYGRKHLRAV--DVNM 356 (474)
Q Consensus 288 ~ll~~aa~~~g~~~i~g~~~~~~~~---d--~~~~~~L~~m-Ga~v~~~~---~~i~i~g~~~~~~~~~~l~g~--~i~~ 356 (474)
.-++++++++.+++|.|+..+|-+. + ...++.+.++ |++++... ..++..+. .++|. ++|+
T Consensus 41 ~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~PG--------~i~gg~~~~d~ 112 (358)
T 3tut_A 41 SALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPG--------TVRGGDYRFAI 112 (358)
T ss_dssp HHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEECC--------CCCCCEEEEEC
T ss_pred HHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEECC--------CccCceEEEEC
Confidence 3566777889999999998766432 1 3345555553 88888664 24666654 34443 4455
Q ss_pred CCCC---cHHHHHHHHHHhCCCCeEE--ecccccccccc-hhHH-HHHHHHHHcCCEEEE
Q 011947 357 NKMP---DVAMTLAVVALFADGPTAI--RDVASWRVKET-ERMI-AICTELRKLGATVEE 409 (474)
Q Consensus 357 ~~~~---r~~~~lav~a~~a~g~~~I--~~~~~~r~kes-dR~~-~~~~~L~~lG~~i~~ 409 (474)
...- -+.-++..++++++++++| ++...+..+-| |-+. .+...|+++|++++.
T Consensus 113 ~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~l 172 (358)
T 3tut_A 113 GSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQT 172 (358)
T ss_dssp SSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEEE
T ss_pred CCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4222 3455677778899998764 45554433333 2111 455678999997664
No 23
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=86.11 E-value=5.1 Score=39.17 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=65.0
Q ss_pred hhccCCCeeEEecCCCCH------hH-HHHHHHHHHc-CCEEEEeC-CcceEEEEecCCCCCccccCCCcceEEecCchh
Q 011947 62 LSLSFQGTTVVDNLLSSE------DI-HHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 132 (474)
Q Consensus 62 ~a~l~~g~~~i~~~l~~r------~i-~~~i~aL~~l-Ga~i~~~~-~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~ 132 (474)
+|++...+++|+|.=..| +. ...+++++++ +++++..+ ++..++..+. .+... +..++++.+|+
T Consensus 23 LS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg--~i~gG-----~~~~d~~tagS 95 (365)
T 3pqv_A 23 MATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPG--IITGG-----SYTHQCPNSKP 95 (365)
T ss_dssp HHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECC--EECCE-----EEEEECCTTSC
T ss_pred HHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECC--cccCC-----eEEEECCCCcc
Confidence 677888899999842222 22 3456666665 45554332 2345665542 22222 35788988877
Q ss_pred hhHHHHHHHHhc---CCCcEEEEeCCCCcC-CCChhhH----HHHHHhCCCE-EE
Q 011947 133 AMRPLTAAVTAA---GGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGAD-VD 178 (474)
Q Consensus 133 t~r~L~a~~~~~---~~~~~i~l~g~~~l~-~rp~~~l----~~~L~~~G~~-v~ 178 (474)
...+|.+++... +.+.+++++|...-. ++|++.+ +-+|++||++ ++
T Consensus 96 i~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~~~~ 150 (365)
T 3pqv_A 96 VGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECA 150 (365)
T ss_dssp HHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCCSCE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 654554443322 467889999865433 4555443 5678999997 54
No 24
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=73.01 E-value=17 Score=35.49 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=66.3
Q ss_pred HHHHHHhccCCeEEEeccCCCCccc---h--hHHHHHHHHc-CCEEEEec---CeEEEeCCCCCCCCCCCcceE--EEcC
Q 011947 288 YFVAGAAVTGGTVTVEGCGTSSLQG---D--VKFAEVLEKM-GAKVTWTE---NSVTVTGPPRDPYGRKHLRAV--DVNM 356 (474)
Q Consensus 288 ~ll~~aa~~~g~~~i~g~~~~~~~~---d--~~~~~~L~~m-Ga~v~~~~---~~i~i~g~~~~~~~~~~l~g~--~i~~ 356 (474)
.-++++++++.+++|.|+..+|-+. + ...++.|.++ +++++..+ ..++..+. .++|. ++|+
T Consensus 19 ~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg--------~i~gG~~~~d~ 90 (365)
T 3pqv_A 19 LRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPG--------IITGGSYTHQC 90 (365)
T ss_dssp HHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECC--------EECCEEEEEEC
T ss_pred HHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECC--------cccCCeEEEEC
Confidence 3466777889999999998776542 1 4456666664 55555432 34555543 35554 3555
Q ss_pred CCCCcH---HHHHHHHHHhCCCCeE--Eecccccccccc-hhHH-HHHHHHHHcCCE-EEE
Q 011947 357 NKMPDV---AMTLAVVALFADGPTA--IRDVASWRVKET-ERMI-AICTELRKLGAT-VEE 409 (474)
Q Consensus 357 ~~~~r~---~~~lav~a~~a~g~~~--I~~~~~~r~kes-dR~~-~~~~~L~~lG~~-i~~ 409 (474)
..--.+ ..+++.++.+++++++ |++..++...-| |-+. .+...|++||++ ++.
T Consensus 91 ~tagSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~~~~l 151 (365)
T 3pqv_A 91 PNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECAL 151 (365)
T ss_dssp CTTSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCCSCEE
T ss_pred CCCcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 432222 3345556677888865 556555444433 2111 245678999997 553
No 25
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=59.59 E-value=11 Score=36.62 Aligned_cols=109 Identities=24% Similarity=0.295 Sum_probs=58.8
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|+.|...++|||+|. ...|+ +..++..+.+.|++.|.++.+.+....+-+.+.. .+-.--.+
T Consensus 32 l~G~~~d~QiaAfL~al-r~kge----------t~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTG-----Gdg~~t~n 95 (346)
T 4hkm_A 32 MRGEVSDAMVSAILTGL-RVKKE----------TIGEIAGAATVMREFSRRVEVTDRRHMVDIVGTG-----GDGSHTFN 95 (346)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC-----------CCC
T ss_pred HCCCCCHHHHHHHHHHH-HHHCc----------CHHHHHHHHHHHHHhCCCCCCCCCccceeecCCC-----CCCccccC
Confidence 46777777788999875 33342 3356788899999999888754321234444421 11111123
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
++.++-+++++ ++-++-.+|-....-+ ..-.|.|+.+|+++....
T Consensus 96 iSt~~a~v~Aa--~G~~V~khG~r~~ss~--~GsaD~LeaLG~~~~ls~ 140 (346)
T 4hkm_A 96 ISTCAMFVAAA--GGAKVAKHGNRSVSSK--SGSADALEALGAVIELQP 140 (346)
T ss_dssp HHHHHHHHHHH--TTCEEEEEC-----------CHHHHHTTTCCCCCCH
T ss_pred cHHHHHHHHHh--cCCCeeecCCCCCCCC--cCHHHHHHHcCCCcccCH
Confidence 44433333332 3667766663222222 345689999999987653
No 26
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=49.64 E-value=38 Score=32.38 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=61.7
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..|...+++||+|. ...|+ +..++..+.+.|++.+..+.+... ..+-+.|. +.+-..-.+
T Consensus 26 ~~g~~~~~QiaAfL~al-r~kge----------t~~Eiag~~~am~~~~~~~~~~~~-~~vD~~gT-----GGdg~~tfN 88 (329)
T 2elc_A 26 MAGEVSPVRAAGLLVAL-SLRGE----------RPHEIAAMARAMREAARPLRVHRR-PLLDIVGT-----GGDGKGLMN 88 (329)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCCCCS-SEEEEEEC-----CCCSSCCCC
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCCCCCCCC-CeeEEcCC-----CCCCCCccc
Confidence 35677777788988875 33343 345678889999999987765421 13434332 111111112
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
.|+++-+++++ ++-++-.+|-....-+ ..-.|.|+.+|+++....
T Consensus 89 iSt~~a~v~Aa--~Gv~V~kHGnr~~ss~--~GsaDvLeaLG~~~~~~~ 133 (329)
T 2elc_A 89 LSTLAALVAAA--GGVAVAKHGNRAASSR--AGSADLLEALGVDLEAPP 133 (329)
T ss_dssp CHHHHHHHHHH--TTCEEEEEECCCTTTT--CSHHHHHHHTTCCTTCCH
T ss_pred cHHHHHHHHHh--CCCCEEEeCCCCCCCc--ccHHHHHHhCCCCCCCCH
Confidence 34433333333 3667777764322223 356799999999976543
No 27
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=44.21 E-value=35 Score=32.93 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=59.4
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|..|...++|||+|. ...|+ +..++..+.+.|++.+..+.+... ..+-+.|.. .+-.--.+
T Consensus 39 l~g~~~~~QiaAfL~al-r~kge----------t~eEiag~~~am~~~~~~~~~~~~-~~vD~~gTG-----Gdg~~tfN 101 (345)
T 1khd_A 39 VRGELEDSQLAAALISM-KMRGE----------RPEEIAGAASALLADAQPFPRPDY-DFADIVGTG-----GDGTNSIN 101 (345)
T ss_dssp TTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHTSCCCCCCSS-CCEEEEECC-----CCSSCBCC
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCcCCCCCC-CeeeecCCC-----CCCCCccc
Confidence 35677777788988875 33343 345678889999999987755321 134343321 11111235
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEe
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 330 (474)
+|+++-++++++ +-++-.+|-....- +...-.|.|+.+|+++...
T Consensus 102 iSt~~A~v~Aa~--Gv~VakHGnr~~ss-~~~GsaDvLeaLGv~~~~~ 146 (345)
T 1khd_A 102 ISTASAFVAASC--GAKVAKHGNRSVCQ-PLAGSCDLLQAFGIRLDMS 146 (345)
T ss_dssp CHHHHHHHHHHH--TCCEEEEECC----------CHHHHHTTCCTTCC
T ss_pred hHHHHHHHHHhC--CCcEEEeCCCCCCC-CcccHHHHHHhCCCCCCCC
Confidence 566544444433 66676666432222 0234578999999987654
No 28
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=42.73 E-value=38 Score=33.09 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=61.2
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCc-eeEEEEeCCCcccCCcceeecC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS-WDRFFIQGGQKYKSPGNAFVEG 281 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~-~~~i~i~~~~~l~~~~~~~~~~ 281 (474)
+.|..+...+++||+|. ...|+ +..++..+.++|++.+.++..... ...+-+.|. +.+-.--.
T Consensus 52 ~~G~~~~~QiaAfL~Al-r~kGe----------t~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gT-----GGdg~~T~ 115 (377)
T 3r88_A 52 MTGNARPAQIAAFAVAM-TMKAP----------TADEVGELAGVMLSHAHPLPADTVPDDAVDVVGT-----GGDGVNTV 115 (377)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEEC-----CCCSCCBC
T ss_pred HCCCCCHHHHHHHHHHH-HHhCc----------CHHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCC-----CCCCcCcc
Confidence 45667777788988875 33343 335678889999999887764321 012333332 11111112
Q ss_pred CchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 282 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 282 D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
+++.++-+++++ ++-++...|-....-+ ..-.|.|+.+|++++...
T Consensus 116 niSt~~A~v~Aa--~Gv~VaKHGnR~~ss~--~GsaDvLEaLGv~~~l~~ 161 (377)
T 3r88_A 116 NLSTMAAIVVAA--AGVPVVKHGNRAASSL--SGGADTLEALGVRIDLGP 161 (377)
T ss_dssp CHHHHHHHHHHH--TTCCEEEEECCCSSSS--CCHHHHHHHTTCCCCCCH
T ss_pred ccHHHHHHHHHh--cCCeEEeECCCCCCCc--ccHHHHHHHcCCCcccch
Confidence 345543333333 3667777764322223 345689999999987653
No 29
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=40.59 E-value=56 Score=31.83 Aligned_cols=107 Identities=22% Similarity=0.169 Sum_probs=57.6
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEE--------EEeC--ceeEEEEeCCCccc
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFV--------EHSD--SWDRFFIQGGQKYK 272 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i--------~~~~--~~~~i~i~~~~~l~ 272 (474)
+.|..|...++|||+|. ...|+ +..++..+.+.|++.+.++ .+.+ . ..+-+.|.
T Consensus 53 l~G~~~~~QiaAfL~Al-r~kGe----------t~eEiag~~~am~~~~~~~~~~~~~~~~~~~~~~-~~vD~~gT---- 116 (374)
T 1vqu_A 53 LSEAVPPELSGAILTAL-NFKGV----------SADELTGMAEVLQSQSKMGTGENYSQLPITNSPF-SIIDTCGT---- 116 (374)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHTTCCC-----------CCSSS-CCEEEEEC----
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCccccccccccCccccCC-CeeEEeCC----
Confidence 45667777788988875 33343 3356788899999999877 4432 1 12323322
Q ss_pred CCcceeecCCchhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEe
Q 011947 273 SPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 330 (474)
Q Consensus 273 ~~~~~~~~~D~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~ 330 (474)
+.+-....+.|.++-+++++ ++-++-..|-....-+ ..-.|.|+.+|+++...
T Consensus 117 -GGdg~~tfNiSt~~A~v~Aa--~Gv~VaKHGnR~~ss~--~GsaDvLEaLGv~~~~~ 169 (374)
T 1vqu_A 117 -GGDGSSTFNISTAVAFVAAA--YGVPVAKHGNRSASSL--TGSADVLEALGVNLGAS 169 (374)
T ss_dssp -C---CCBCCHHHHHHHHHHH--TTCCEEEEEECC--CT--TCHHHHHHHTTCCTTCC
T ss_pred -CCCCCCccchHHHHHHHHHh--CCCCEEEECCCCCCCC--CCHHHHHHhCCCCCCCC
Confidence 11111122334433333333 3666766664322223 35679999999987654
No 30
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=29.44 E-value=38 Score=32.64 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=47.2
Q ss_pred CCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCC
Q 011947 76 LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 155 (474)
Q Consensus 76 l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~ 155 (474)
...+.+..+.+++++.|.++...+....+-+.|.|+.-. ..++. + .+.+.+++. .+.++...|.
T Consensus 53 et~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTGGdg~--------~t~ni---S----t~~a~v~Aa-~G~~V~khG~ 116 (346)
T 4hkm_A 53 ETIGEIAGAATVMREFSRRVEVTDRRHMVDIVGTGGDGS--------HTFNI---S----TCAMFVAAA-GGAKVAKHGN 116 (346)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC--------------CCCH---H----HHHHHHHHH-TTCEEEEEC-
T ss_pred cCHHHHHHHHHHHHHhCCCCCCCCCccceeecCCCCCCc--------cccCc---H----HHHHHHHHh-cCCCeeecCC
Confidence 446889999999999999887644334566777764211 12221 1 233333332 3678888886
Q ss_pred CCcCCCChhhHHHHHHhCCCEEEe
Q 011947 156 PRMRERPIGDLVTGLKQLGADVDC 179 (474)
Q Consensus 156 ~~l~~rp~~~l~~~L~~~G~~v~~ 179 (474)
..+.++-- -.|.|+.+|++++.
T Consensus 117 r~~ss~~G--saD~LeaLG~~~~l 138 (346)
T 4hkm_A 117 RSVSSKSG--SADALEALGAVIEL 138 (346)
T ss_dssp ----------CHHHHHTTTCCCCC
T ss_pred CCCCCCcC--HHHHHHHcCCCccc
Confidence 55555432 26889999998864
No 31
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=27.01 E-value=58 Score=31.35 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=58.4
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeCceeEEEEeCCCcccCCcceeecCC
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 282 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~~~~~i~i~~~~~l~~~~~~~~~~D 282 (474)
+.|+.|...++|||+|. ...|+ +..++..+.+.|++.+.++.+. . .+-+.|. +.+-.--.+
T Consensus 29 ~~g~~~~~QiaAfL~al-r~kge----------t~eEiag~~~am~~~~~~~~~~-~--~vD~~gT-----GGdg~~tfN 89 (345)
T 1o17_A 29 IRGEVPEILVSAILVAL-RMKGE----------SKNEIVGFARAMRELAIKIDVP-N--AIDTAGT-----GGDGLGTVN 89 (345)
T ss_dssp HTTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHHSCCCCCT-T--CEECCC---------CCCBCC
T ss_pred HcCCCCHHHHHHHHHHH-HHhCC----------CHHHHHHHHHHHHHhCCCCCCC-C--ceeeCCC-----CCCCCCccc
Confidence 45677777788988875 33343 3356788899999998876543 2 2333332 111111123
Q ss_pred chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHcCCEEEEec
Q 011947 283 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 331 (474)
Q Consensus 283 ~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~mGa~v~~~~ 331 (474)
.|+++-++++++ -++-.+|-....-+ ..-.|.|+.+|+++....
T Consensus 90 iSt~~A~v~Aa~---v~VaKHGnR~~ss~--~GsaDvLEaLGv~~~~~~ 133 (345)
T 1o17_A 90 VSTASAILLSLV---NPVAKHGNRAVSGK--SGSADVLEALGYNIIVPP 133 (345)
T ss_dssp HHHHHHHHHTTT---SCEEEEECCCSSSS--CSHHHHHHHHTBCCCCCH
T ss_pred hHHHHHHHHHHc---CCEEEECCCCCCCc--ccHHHHHHhCCCCCCCCH
Confidence 344443433333 45656653322223 356799999999987543
No 32
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=24.71 E-value=2.4e+02 Score=21.62 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=47.6
Q ss_pred CcEEEEeCCCCcCCCChhhHHHHHHhCCCEEEeeCCCCCCcEEEecCCCCCCeeEEEcCCCCHHHHHHHHHHhhcCCCce
Q 011947 147 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNV 226 (474)
Q Consensus 147 ~~~i~l~g~~~l~~rp~~~l~~~L~~~G~~v~~~~~~~~~~i~I~~~~~~~~~~~~i~gd~Ss~~~sall~aa~l~~g~~ 226 (474)
..++++....-|..||-..+.+..++|..+|.... + ...+++ .|- .++|..++--+.++
T Consensus 15 ~~~v~I~n~~GLHARPAa~~v~~A~~f~s~I~i~~----------~-------~~~vdA-KSI---m~lmsLg~~~G~~i 73 (100)
T 1kkl_H 15 QKTFKVTADSGIHARPATVLVQTASKYDADVNLEY----------N-------GKTVNL-KSI---MGVMSLGIAKGAEI 73 (100)
T ss_dssp CEEEEBCCTTCSCHHHHHHHHHHHHTCSSEEEEEE----------T-------TEEEET-TCH---HHHHHTCCCTTCEE
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHhhCCCeEEEEE----------C-------CEEEec-HhH---HHHhcCCCCCCCEE
Confidence 35677777666889999999999999998876421 1 123443 343 46665443334456
Q ss_pred EEEEccCCCCchhHHHHHHHHHH
Q 011947 227 EIEIIDKLISVPYVEMTLKLMER 249 (474)
Q Consensus 227 ~I~~~~~~~s~~~~~~~~~~L~~ 249 (474)
+|..-++ ......+.+.++++.
T Consensus 74 ~i~a~G~-Dee~Al~~l~~li~~ 95 (100)
T 1kkl_H 74 TISASGA-DENDALNALEETMKS 95 (100)
T ss_dssp EEEEEST-THHHHHHHHHHHHHH
T ss_pred EEEEeCC-CHHHHHHHHHHHHHh
Confidence 6664332 222334555555554
No 33
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=24.47 E-value=1.1e+02 Score=29.14 Aligned_cols=85 Identities=22% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCCHhHHHHHHHHHHcCCEEEEeCCcceEEEEecCCCCCccccCCCcceEEecCchhhhHHHHHHHHhcCCCcEEEEeCC
Q 011947 76 LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 155 (474)
Q Consensus 76 l~~r~i~~~i~aL~~lGa~i~~~~~~~~l~i~g~~~~~~~~~~s~~~~~i~~g~sg~t~r~L~a~~~~~~~~~~i~l~g~ 155 (474)
...+.+..+.+++++.+..+.+.. ...+-+.|.|+.-. ..++. + .+.+.+++. .+.++...|.
T Consensus 47 et~~Eiag~~~am~~~~~~~~~~~-~~~vD~~gTGGdg~--------~tfNi---S----t~~a~v~Aa-~Gv~V~kHGn 109 (329)
T 2elc_A 47 ERPHEIAAMARAMREAARPLRVHR-RPLLDIVGTGGDGK--------GLMNL---S----TLAALVAAA-GGVAVAKHGN 109 (329)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCCC-SSEEEEEECCCCSS--------CCCCC---H----HHHHHHHHH-TTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCC-CCeeEEcCCCCCCC--------Ccccc---H----HHHHHHHHh-CCCCEEEeCC
Confidence 457889999999999998876542 23566778765211 12322 1 233333332 3678888887
Q ss_pred CCcCCCChhhHHHHHHhCCCEEEe
Q 011947 156 PRMRERPIGDLVTGLKQLGADVDC 179 (474)
Q Consensus 156 ~~l~~rp~~~l~~~L~~~G~~v~~ 179 (474)
..+.++-- -.|.|+.+|+++..
T Consensus 110 r~~ss~~G--saDvLeaLG~~~~~ 131 (329)
T 2elc_A 110 RAASSRAG--SADLLEALGVDLEA 131 (329)
T ss_dssp CCTTTTCS--HHHHHHHTTCCTTC
T ss_pred CCCCCccc--HHHHHHhCCCCCCC
Confidence 66666543 37899999998753
No 34
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=21.63 E-value=1.2e+02 Score=21.79 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCEEEEeCCEEEEeCCC
Q 011947 393 MIAICTELRKLGATVEEGPDYCVITPPE 420 (474)
Q Consensus 393 ~~~~~~~L~~lG~~i~~~~d~l~I~g~~ 420 (474)
+..|..+|++.|+.+..+++.+.++.++
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~ 34 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPP 34 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCc
Confidence 6688999999999999999999998653
No 35
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=20.21 E-value=1.1e+02 Score=30.35 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=59.8
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCceEEEEccCCCCchhHHHHHHHHHHcCCEEEEeC--c-eeEEEEeCCCcccCCcceee
Q 011947 203 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSD--S-WDRFFIQGGQKYKSPGNAFV 279 (474)
Q Consensus 203 i~gd~Ss~~~sall~aa~l~~g~~~I~~~~~~~s~~~~~~~~~~L~~~G~~i~~~~--~-~~~i~i~~~~~l~~~~~~~~ 279 (474)
+.|..|...++|||+|. ...|+ +..++..+.+.|++.|.++.+.. - ...+-+.+. +.+
T Consensus 30 ~~G~~sd~QiaAfL~Al-r~kGe----------t~eEiag~~~Am~~~~~~~~~~~~~~~~~~vD~~gT-----GGd--- 90 (440)
T 2tpt_A 30 RDNTISEGQIAALAMTI-FFHDM----------TMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHST-----GGV--- 90 (440)
T ss_dssp HHTCSCHHHHHHHHHHH-HHHCC----------CHHHHHHHHHHHHHTSBCCCCTTTTCSSCBEEEEEC-----CCS---
T ss_pred HcCCCCHHHHHHHHHHH-HHcCC----------CHHHHHHHHHHHHHhCCcCCCcccccCCCeeeeCCC-----CCC---
Confidence 35677777788998875 33343 33567888999999998876643 0 013333332 111
Q ss_pred cCC-chhhHHHHHHHhccCCeEEEeccCCCCccchhHHHHHHHHc-CCEEEEec
Q 011947 280 EGD-ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKM-GAKVTWTE 331 (474)
Q Consensus 280 ~~D-~~~a~~ll~~aa~~~g~~~i~g~~~~~~~~d~~~~~~L~~m-Ga~v~~~~ 331 (474)
+| .+.++-+++++ ++-++--++-....-+ ..-.|.|+.+ |++++...
T Consensus 91 -G~~iSt~~A~vvAa--~Gv~VaKHGnR~~ss~--~GsaDvLEaL~Gv~~~ls~ 139 (440)
T 2tpt_A 91 -GDVTSLMLGPMVAA--CGGYIPMISGRGLGHT--GGTLDKLESIPGFDIFPDD 139 (440)
T ss_dssp -SCCHHHHHHHHHHH--TTCBEEEEECCCCTTS--CCHHHHHTTSTTCCSCCCH
T ss_pred -CccHHHHHHHHHHh--CCCcEEEECCCCCCCc--ccHHHHHHhCcCCCCCCCH
Confidence 11 33332233322 3666666653322222 3567999999 99887643
Done!