RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011947
(474 letters)
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
Length = 443
Score = 833 bits (2153), Expect = 0.0
Identities = 350/407 (85%), Positives = 376/407 (92%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+GTTVVDNLL S+DI +ML ALK LGLNVEED RA+VEGCGG FP++ ++ELF
Sbjct: 36 EGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELF 95
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCP
Sbjct: 96 LGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCP 155
Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
PVR+N GGLPGGKVKLSG +SSQYLTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKL
Sbjct: 156 PVRVNAAGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKL 215
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
MERFGV VEHSDSWDRFFI+GGQKYKSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCG
Sbjct: 216 MERFGVSVEHSDSWDRFFIKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCG 275
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTL 366
T+SLQGDVKFAEVLEKMGAKV WTENSVTVTGPPRD +G KHL+A+DVNMNKMPDVAMTL
Sbjct: 276 TTSLQGDVKFAEVLEKMGAKVEWTENSVTVTGPPRDAFGGKHLKAIDVNMNKMPDVAMTL 335
Query: 367 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAA 426
AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC+ITPP+KLK A
Sbjct: 336 AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPKKLKPAE 395
Query: 427 IDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
IDTYDDHRMAMAFSLAAC DVPVTI DP CTRKTFP YFDVL+S+ K
Sbjct: 396 IDTYDDHRMAMAFSLAACGDVPVTINDPGCTRKTFPTYFDVLESIAK 442
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 500 bits (1290), Expect = e-173
Identities = 219/414 (52%), Positives = 277/414 (66%), Gaps = 23/414 (5%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+GTT V +LL S+D MLDAL+ LG VE+ R + G GG FP+ + +LF
Sbjct: 39 EGTTTVRDLLDSDDTRVMLDALRALGCGVEQLGDTYR--ITGLGGQFPVKQ-----ADLF 91
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTAMRPLTAA+ GG Y L GVPRM ERPIGDLV L+QLG D+D + P
Sbjct: 92 LGNAGTAMRPLTAALALLGG--EYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEGFP 149
Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALG-NVEIEIIDKLISVPYVEMTLK 245
P+RI +++ G +SSQ+LTALLMA PL ++ IE++ +LIS PY+E+TL
Sbjct: 150 PLRIGPAPLRLDAPIRVRGDVSSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLN 209
Query: 246 LMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEG 304
L+ RFG+ V+ + W RF I G +Y+SPG VEGDASSASYF+A A+ GG V +EG
Sbjct: 210 LLARFGIAVQR-EGWQRFTIPAGSRYRSPGEIHVEGDASSASYFIAAGAIAGGAPVRIEG 268
Query: 305 CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAM 364
G S+QGD++FAE MGA+VT N + V R L+A+D++ N +PD AM
Sbjct: 269 VGRDSIQGDIRFAEAARAMGAQVTSGPNWLEV----RRGAWP--LKAIDLDCNHIPDAAM 322
Query: 365 TLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEK--- 421
TLAV+AL+ADG T +R++ASWRVKET+R+ A+ TELRKLGATVEEG DY +TPP +
Sbjct: 323 TLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVEEGADYIRVTPPAQAAD 382
Query: 422 LKVAAIDTYDDHRMAMAFSLAA--CADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
K AAI TYDDHRMAM FSLAA A +PV I DP C KTFPDYF+ L SV +
Sbjct: 383 WKAAAIHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPDYFEALFSVAQ 436
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
This model represents
3-phosphoshikimate-1-carboxyvinyltransferase (aroA),
which catalyzes the sixth of seven steps in the
shikimate pathway of the biosynthesis of chorimate.
Chorismate is last common precursor of all three
aromatic amino acids. Sequences scoring between the
trusted and noise cutoffs include fragmentary and
aberrant sequences in which generally well-conserved
motifs are missing or altererd, but no example of a
protein known to have a different function [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 409
Score = 470 bits (1213), Expect = e-165
Identities = 182/415 (43%), Positives = 243/415 (58%), Gaps = 25/415 (6%)
Query: 62 LSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTG 121
L+ +G T V NLL SED LDAL+ LG +E+ + A++EG GG P
Sbjct: 18 LAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDG--GEVAVIEGVGGKEP------- 68
Query: 122 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 181
+ EL LGN+GT R LT + A G +L G +R+RP+G LV L+QLGA++ +
Sbjct: 69 QAELDLGNSGTTARLLTGVLALADGE--VVLTGDESLRKRPMGRLVDALRQLGAEISSLE 126
Query: 182 GTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEI-IDKLISVPYV 240
G P+ I G LPGG V +SG SSQY +ALL+AAP AL V I I + L S PY+
Sbjct: 127 GGGSLPLTI--SGPLPGGIVYISGSASSQYKSALLLAAP-ALQAVGITIVGEPLKSRPYI 183
Query: 241 EMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTV 300
E+TL L+ FGV VE SD + + GGQKY G V GD SSA++F+A AA+TGG V
Sbjct: 184 EITLDLLGSFGVEVERSDG-RKIVVPGGQKYGPQG-YDVPGDYSSAAFFLAAAAITGGRV 241
Query: 301 TVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP 360
T+E G + QGD VLE+MGA + E+ + V G L+ + ++M+ M
Sbjct: 242 TLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVEGASG-------LKGIKIDMDDMI 294
Query: 361 DVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE 420
D TLAV+A FA+G T I RVKE++R+ AI ELRKLG VEE D I +
Sbjct: 295 DELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDGLYIRGKK 354
Query: 421 KLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474
+LK A +DT+ DHR+AMAF++A A+ V I DP C K+FP +FDVL+ +
Sbjct: 355 ELKGAVVDTFGDHRIAMAFAVAGLVAEGEVLIDDPECVAKSFPSFFDVLERLGAN 409
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 470 bits (1213), Expect = e-164
Identities = 170/418 (40%), Positives = 246/418 (58%), Gaps = 24/418 (5%)
Query: 63 SLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE 122
+L+ +G T + NLL SED L+AL+ LG+ +E+D +VEG GG +
Sbjct: 34 ALA-EGETTITNLLRSEDTLATLNALRALGVEIEDD----EVVVEGVGGGGLKEPEDV-- 86
Query: 123 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG 182
L GN+GT MR LT + G +L G +R+RP+G L+ L+Q+GA ++
Sbjct: 87 --LDCGNSGTTMRLLTGLLALQPGE--VVLTGDESLRKRPMGRLLDPLRQMGAKIEGR-D 141
Query: 183 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPL-ALGNVEIEIIDKLISVPYVE 241
P+ I +GG GG ++ G +SSQ++ +LL+ APL A G+ E +I+ L S P+ E
Sbjct: 142 EGYLPLTI--RGGKKGGPIEYDGPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTE 199
Query: 242 MTLKLMERFGVFVEHSDSWD--RFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGG- 298
+TL+++ FGV VE+ + W R I+GGQ+ + + V GD SSA++F+A AA+TGG
Sbjct: 200 ITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLR-GQDITVPGDPSSAAFFLAAAAITGGS 258
Query: 299 TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK-HLRAVDVNMN 357
VT+ G +S QG +VLEKMGA + EN P D R L+ +D+++
Sbjct: 259 EVTITNVGLNSTQGGKAIIDVLEKMGADIEI-ENEREGGEPVGDIRVRSSELKGIDIDIP 317
Query: 358 KMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVIT 417
+ D A TLAV+A FA+G T IR+ RVKET+R+ A+ TELRKLGA VEE D +IT
Sbjct: 318 DIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEETEDGLIIT 377
Query: 418 PPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474
+D+Y DHR+AMAF++A A+ PVTI DP C K+FPD+F+ L S+
Sbjct: 378 GGPLA--GVVDSYGDHRIAMAFAIAGLAAEGPVTIDDPECVAKSFPDFFEDLASLGAN 433
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway.
Length = 409
Score = 465 bits (1199), Expect = e-163
Identities = 170/408 (41%), Positives = 248/408 (60%), Gaps = 26/408 (6%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G + ++NLL S+D L+AL+ LG +EE+ + G GGL E L
Sbjct: 25 EGESRIENLLDSDDTLATLEALRALGAKIEEE--GGTVEIVGGGGLGLPP-----EAVLD 77
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
GN+GT MR LT + GG+ +L G +R+RP+G LV L+QLGA+++ G P
Sbjct: 78 CGNSGTTMRLLTGLLALQGGD--SVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYP 135
Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
P + G GGL GG+V++ G +SSQ+ +ALL+AAPLA G I I +L S PY++ T ++
Sbjct: 136 P--LIGGGGLKGGEVEIPGAVSSQFKSALLLAAPLAEGPTTIIIG-ELESKPYIDHTERM 192
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
+ FG VE + ++GGQKYK P VEGDASSA++F+A AA+TG + ++ G
Sbjct: 193 LRAFGAEVEVDG-YRTITVKGGQKYKGP-EYTVEGDASSAAFFLAAAAITGSEIVIKNVG 250
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWT-ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMT 365
+S GD +VL++MGA + E++V V L+ +D++ N +PD A T
Sbjct: 251 LNS--GDTGIIDVLKEMGADIEIGNEDTVVVESGG-------KLKGIDIDGNDIPDEAPT 301
Query: 366 LAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPE-KLKV 424
LAV+A FA+GPT IR+ A RVKE++R+ A+ TELRKLGA VEE D +I K
Sbjct: 302 LAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEGGPLKGAG 361
Query: 425 AAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471
+ TY DHR+AM+F++A A+ VTI+DP C K+FP++F+ L+S+
Sbjct: 362 VEVYTYGDHRIAMSFAIAGLVAEGGVTIEDPECVAKSFPNFFEDLESL 409
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase).
Length = 415
Score = 437 bits (1126), Expect = e-151
Identities = 188/405 (46%), Positives = 246/405 (60%), Gaps = 23/405 (5%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK-RAIVEGCGGLFPLAKQQTGEIEL 125
G + + NLL S+D ML+AL+ LG V E K IVEG GG F E+ L
Sbjct: 31 AGESTITNLLDSDDTRLMLEALRALGAEVIELDEEKTVVIVEGLGGSFEAPY----ELVL 86
Query: 126 FLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 185
LGN+GTAMRPL A + +L G + ERPI L+ GL+QLGA+++ G
Sbjct: 87 DLGNSGTAMRPLLGR--LALQSGEVVLTGDDSIGERPIDRLLDGLRQLGAEIEYREGYGY 144
Query: 186 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP-LALGNVEIEIIDKLISVPYVEMTL 244
P+++ G L G V + G +SSQ++T+LLM A LA G IE L S PY++ T
Sbjct: 145 APLKVRG---LKLGGVHIDGSISSQFVTSLLMLAALLAEGTTIIE---NLASEPYIDDTE 198
Query: 245 KLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEG 304
++ +FG +E S + +I+GGQK VEGD SSA+YF+A AA+TGGTV VE
Sbjct: 199 NMLNKFGAKIEGSGTETSIYIKGGQKLPG-VEYRVEGDRSSAAYFLAAAAITGGTVKVEN 257
Query: 305 CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAM 364
G +SLQGD E+LEKMGA++T E+S V GPP LR +DV+MN PD A
Sbjct: 258 VGINSLQGDRAADEILEKMGAEITQGEDSDIVVGPP-------GLRGIDVDMNTAPDPAP 310
Query: 365 TLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLKV 424
T AV A FA+G + I ++ RVKET+R+ A+ TELRKLGA VEEGPD +IT +LK
Sbjct: 311 TTAVQAAFAEGTSRIEGISELRVKETDRLFAMATELRKLGAEVEEGPDGLIITAVVELKG 370
Query: 425 AAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVL 468
A +D+Y DHR AMAF+LA A+ V I DP CT K+FPD+F+ L
Sbjct: 371 AEVDSYGDHRAAMAFALAGLVAEGEVIIDDPECTDKSFPDFFEKL 415
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 425 bits (1095), Expect = e-146
Identities = 164/413 (39%), Positives = 237/413 (57%), Gaps = 27/413 (6%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G + + NLL SED L+AL+ LG +E++ +V G GG L
Sbjct: 37 EGESTITNLLDSEDTLATLEALRALGARIEKEGD--TLVVRGTGGELK-----EPPAVLD 89
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
GN+GT +R LT + + +L G +R+RP+G LV L+QLGA +D G
Sbjct: 90 CGNSGTTLRLLTGLLALGSPGET-VLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYL 148
Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKL 246
P+ I KGGL GG+V++ G +SSQ +++LL+ APL I + L S PY++ TL +
Sbjct: 149 PLTI--KGGLKGGEVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDM 206
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGG--TVTVEG 304
++ FGV VE+ RF+I GGQK PG+ V GD SSA++F+A AA+T +T++
Sbjct: 207 LKAFGVEVENEG--YRFYIPGGQKLT-PGDYDVPGDYSSAAFFLAAAAITPRSTGITLKN 263
Query: 305 CGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTGPPRDPYGRKHLRAVDVNMNKMPDVA 363
D +VLEKMGA + ++SV V G L+ ++V+M+ MPD+A
Sbjct: 264 VQ--PNPTDKGILDVLEKMGADIEIGDDSVLRVRGSGE-------LKGIEVDMDDMPDLA 314
Query: 364 MTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLK 423
TLAV+A FA+G T IR+ RVKE++R+ A+ TELRKLG VEE D +IT KLK
Sbjct: 315 PTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLIITGGTKLK 374
Query: 424 -VAAIDTYDDHRMAMAFSLAA-CADVPVTIKDPSCTRKTFPDYFDVLDSVTKR 474
+D+Y DHR+AMAF++A ++ V I D C K+FP +F+ L S+ R
Sbjct: 375 GAGTVDSYGDHRIAMAFAVAGLLSEGGVRIDDAECVAKSFPGFFEDLASLGAR 427
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 382 bits (981), Expect = e-126
Identities = 215/404 (53%), Positives = 268/404 (66%), Gaps = 17/404 (4%)
Query: 67 QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELF 126
+G T V NLL S+D MLDAL KLG+ + D +V G G F +LF
Sbjct: 275 EGETTVTNLLDSDDTRVMLDALTKLGVKLSRD--GGTCVVGGTRGAF-----TAKTADLF 327
Query: 127 LGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCP 186
LGNAGTA+RPLTAA+ GG Y + GVPRM ERPIGDLV GL+Q+GA +D P
Sbjct: 328 LGNAGTAVRPLTAALAVNGGE--YRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFP 385
Query: 187 PVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL---GNVEIEIIDKLISVPYVEMT 243
P+RI +++ G +SSQ+LTALLM PL G +EI +LIS PY+E+T
Sbjct: 386 PLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEIT 445
Query: 244 LKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVE 303
+KLM RFGV VE D W RF + G +Y+SPG VEGDASSASYF+A A+ GG + VE
Sbjct: 446 IKLMARFGVTVER-DGWQRFTVPAGVRYRSPGTIMVEGDASSASYFLAAGALGGGPLRVE 504
Query: 304 GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVA 363
G G +S+QGDV FA L +MGA VT ++ + V G D +GR L +D++ N +PD A
Sbjct: 505 GVGRASIQGDVGFANALMQMGANVTMGDDWIEVRGIGHD-HGR--LAPIDMDFNLIPDAA 561
Query: 364 MTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLK 423
MT+AV ALFADGP+ +R++ SWRVKET+R+ A+ TELRK+GATVEEG DY V+TPP +L
Sbjct: 562 MTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADYLVVTPPAQLT 621
Query: 424 V-AAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFD 466
A+IDTYDDHRMAM FSL + VPV I DP C KTFPDYFD
Sbjct: 622 PNASIDTYDDHRMAMCFSLVSLGGVPVRINDPKCVGKTFPDYFD 665
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP
synthases and UDP-N-acetylglucosamine enolpyruvyl
transferase. Both enzymes catalyze the reaction of
enolpyruvyl transfer.
Length = 408
Score = 309 bits (793), Expect = e-101
Identities = 119/420 (28%), Positives = 197/420 (46%), Gaps = 31/420 (7%)
Query: 58 SLPSLSLSF--QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 115
S SL + +G T V N+L ED+ + L+ LG+ +E+ ++G G
Sbjct: 14 SHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDG--VITIQGVGM--AG 69
Query: 116 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 175
K + L LGN+GTA+R ++ + A + L G + +RP+ + LK++GA
Sbjct: 70 LKA--PQNALNLGNSGTAIRLISGVLAGADFEVE--LFGDDSLSKRPMDRVTLPLKKMGA 125
Query: 176 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 235
+ + PP+ GK G S+Q +AL+ AA LA G I
Sbjct: 126 SISGQEERDLPPLLKGGK--NLGPIHYEDPIASAQVKSALMFAALLAKGETVIIE---AA 180
Query: 236 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 295
P + T +++ FG + + +QG QK V GD SSA++F+ AA+
Sbjct: 181 KEPTINHTENMLQTFGGHIS-VQGTKKIVVQGPQKLTGQ-KYVVPGDISSAAFFLVAAAI 238
Query: 296 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVN 355
G + ++ G + +VL MGAK+ E++++V L+A ++
Sbjct: 239 APGRLVLQNVGINE--TRTGIIDVLRAMGAKIEIGEDTISVE--------SSDLKATEIC 288
Query: 356 MN---KMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPD 412
++ D +A++AL A G T I+D +VKET+R+ + EL +GA +E D
Sbjct: 289 GALIPRLIDELPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTAD 348
Query: 413 YCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYFDVLDSV 471
+I EKL A ++T+ DHR+ M +LAA AD V + ++P +FD L+S+
Sbjct: 349 GMIIKGKEKLHGARVNTFGDHRIGMMTALAALVADGEVELDRAEAINTSYPSFFDDLESL 408
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the
Enolpyruvate transferase (EPT) family and the RNA 3'
phosphate cyclase family (RTPC). These 2 families differ
in that EPT is formed by 3 repeats of an alpha-beta
structural domain while RTPC has 3 similar repeats with
a 4th slightly different domain inserted between the 2nd
and 3rd repeat. They evidently share the same active
site location, although the catalytic residues differ.
Length = 211
Score = 107 bits (269), Expect = 4e-27
Identities = 49/216 (22%), Positives = 70/216 (32%), Gaps = 41/216 (18%)
Query: 280 EGDASSASYFVAGAAVTGGTVTVEGCGTSS-----LQGDVKFAEVLEKM-GAKVTWTENS 333
+G F+ AA++GG +TV G L+ + F + LEK+ GA V E
Sbjct: 7 KGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELG 66
Query: 334 VTVTGPPRDPYGRKHLRAVDVNMN-----KMPDVAMTLAVVALFADGPTAIRDVASWRV- 387
R + +R DV DV T+ + LFA GPT +
Sbjct: 67 SD-----RISFRPGTVRGGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNP 121
Query: 388 ---KETERMIAICTELRKLGATVEEGPD------------YCVITPPEKLKVAAIDTYDD 432
+ EL K+GA EE ++P EKL A +
Sbjct: 122 SAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGGGVVATEVSPVEKLNTAQL----- 176
Query: 433 HRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVL 468
R + L A + F VL
Sbjct: 177 -RQLVLPMLLA---SGAVEFTVAHPSCHLLTNFAVL 208
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 100 bits (252), Expect = 1e-22
Identities = 118/422 (27%), Positives = 196/422 (46%), Gaps = 49/422 (11%)
Query: 63 SLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG--GLFPLAKQQT 120
SL+ +G T V+ L ED L A + +G+ +E R + G G GL K
Sbjct: 333 SLA-EGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHN-GRVTIHGVGLHGL----KAPP 386
Query: 121 GEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 180
G L++GN+GT+MR L+ + A + +L G + +RP+ + L+++GA ++
Sbjct: 387 GP--LYMGNSGTSMRLLSGLL--AAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIET- 441
Query: 181 LGTNC-PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPY 239
G PP+ I G L G L S+Q + LL+A A G SV
Sbjct: 442 -GEEGRPPLSIRGGQRLKGIHYDLPMA-SAQVKSCLLLAGLYAEGET---------SVTE 490
Query: 240 VEMTLKLMER----FGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 295
T ER FG V+ + ++GG K + + V D SSA++F+ A++
Sbjct: 491 PAPTRDHTERMLRGFGYPVKVEG--NTISVEGGGKLTA-TDIEVPADISSAAFFLVAASI 547
Query: 296 TGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 354
G+ +T+E G + + ++L+ MGA +T EN V G +P +R +
Sbjct: 548 AEGSELTLEHVGINPTR--TGVIDILKLMGADIT-LENEREVGG---EPVADIRVRGARL 601
Query: 355 NMNKMPDVAMTLA--------VVALFADGPTAIRDVASWRVKETERMIAICTELRKLGAT 406
+P+ + LA V A A+G T + RVKE++R+ + L+ LG
Sbjct: 602 KGIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGID 661
Query: 407 VEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAAC-ADVPVTIKDPSCTRKTFPDYF 465
E PD +I ++++ DHR+AM+FS+A+ A P+TI D + +FP++
Sbjct: 662 CEPTPDGIIIEGGI-FGGGEVESHGDHRIAMSFSVASLRASGPITIHDCANVATSFPNFL 720
Query: 466 DV 467
++
Sbjct: 721 EL 722
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 71.4 bits (176), Expect = 2e-13
Identities = 82/307 (26%), Positives = 125/307 (40%), Gaps = 64/307 (20%)
Query: 160 ERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA---L 215
RP+ DL + GL+ LGA ++ + V G L G ++ L S + A +
Sbjct: 110 ARPV-DLHLKGLEALGAKIE--IEDGY--VEAKAAGRLKGARIYL--DFPS--VGATENI 160
Query: 216 LMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG- 267
+MAA LA G I EI+D L + L M G +E + + D I+G
Sbjct: 161 MMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GAKIEGAGT-DTIRIEGV 209
Query: 268 ----GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKM 323
G ++ V D A F+ AA+TGG +TVE L+ L +M
Sbjct: 210 ERLHGAEHT------VIPDRIEAGTFLVAAAITGGDITVENVIPEHLEA---VLAKLREM 260
Query: 324 GAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAI 379
GAK+ E+ + V G +AVD+ P D+ + A+G + I
Sbjct: 261 GAKIEIGEDGIRVDGDGGRL------KAVDIETAPYPGFPTDLQAQFMALLTQAEGTSVI 314
Query: 380 RDVASWRVKETERMIAICTELRKLGATVE-EGPDYCVITPPEKLKVAAIDTYDDHRMAMA 438
+ + E R + + EL ++GA ++ EG +I KL A + D R A
Sbjct: 315 TE----TIFE-NRFMHV-DELNRMGADIKVEGNT-AIIRGVTKLSGAPVMA-TDLRAGAA 366
Query: 439 FSLAACA 445
LA A
Sbjct: 367 LVLAGLA 373
Score = 40.5 bits (96), Expect = 0.002
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 52/246 (21%)
Query: 199 GKVKLSG-KLSSQYLTALLMAAPLALGNVEIE----IIDKLISVPYVEMTLKLMERFGVF 253
G+V++SG K ++ +L AA L V + ++D VE ++L+ G
Sbjct: 3 GEVRISGAKNAA---LPILAAALLTDEPVTLRNVPDLLD-------VETMIELLRSLGAK 52
Query: 254 VEHSDSWDRFFIQ--GGQKYKSPGNAFVEGDASS--ASYFVAGAAVT-GGTVTVE---GC 305
VE + + I ++P AS V G + G V GC
Sbjct: 53 VEF-EGENTLVIDASNINSTEAPYEL-----VRKMRASILVLGPLLARFGEARVSLPGGC 106
Query: 306 GTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--- 362
+ D+ + LE +GAK+ + V R L+ + ++ P V
Sbjct: 107 AIGARPVDLHL-KGLEALGAKIEIEDGYVEAKAAGR-------LKGARIYLD-FPSVGAT 157
Query: 363 --AMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVE-EGPDYCVITPP 419
M AV A+G T I + A +E E ++ + L K+GA +E G D I
Sbjct: 158 ENIMMAAV---LAEGTTVIENAA----REPE-IVDLANFLNKMGAKIEGAGTDTIRIEGV 209
Query: 420 EKLKVA 425
E+L A
Sbjct: 210 ERLHGA 215
Score = 35.9 bits (84), Expect = 0.037
Identities = 74/333 (22%), Positives = 115/333 (34%), Gaps = 93/333 (27%)
Query: 80 DIHHMLDALKKLGLNVEEDFAMKRAIVEG--CGGLFPLAKQQTGEIELFLGNAGTAMRPL 137
D+H L L+ LG +E + A G G L G E N +
Sbjct: 114 DLH--LKGLEALGAKIEIEDGYVEAKAAGRLKGARIYLDFPSVGATE----NI------M 161
Query: 138 TAAVTAAGGNLSYILDGVPRM----RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 193
AAV A +G + RE I DL L ++GA ++ GT+ +RI G
Sbjct: 162 MAAVLA---------EGTTVIENAAREPEIVDLANFLNKMGAKIEGA-GTDT--IRIEGV 209
Query: 194 GGLPGGKVKLSGKLSSQYLTA--LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMER 249
L G + + + A L+AA + G++ +E I + L +V L +
Sbjct: 210 ERLHGAEH----TVIPDRIEAGTFLVAAAITGGDITVENVIPEHLEAV------LAKLRE 259
Query: 250 FGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY----------FVAGAAVTGGT 299
G +E + R GG + K+ D +A Y F+A GT
Sbjct: 260 MGAKIEIGEDGIRVDGDGG-RLKAV-------DIETAPYPGFPTDLQAQFMALLTQAEGT 311
Query: 300 VTVEGCGTSSLQGD------VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVD 353
+ + + L +MGA + N+ + G L
Sbjct: 312 SVIT---------ETIFENRFMHVDELNRMGADIKVEGNTAIIRGV-------TKLSGAP 355
Query: 354 VNMNKMPD----VAMTLAVVALFADGPTAIRDV 382
V D A+ LA L A+G T I ++
Sbjct: 356 V---MATDLRAGAALVLA--GLAAEGETIISNI 383
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 416
Score = 62.6 bits (153), Expect = 2e-10
Identities = 83/306 (27%), Positives = 122/306 (39%), Gaps = 50/306 (16%)
Query: 160 ERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAA 219
RP+ + GLK LGA++ G V + KG L G + L K+S ++MAA
Sbjct: 120 ARPVDLHLKGLKALGAEIVIEDGY----VYASAKGRLVGAHIVLD-KVSVGATENIIMAA 174
Query: 220 PLALGNV-------EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 272
LA G E EI+D L L M G + + S + I+G +K
Sbjct: 175 VLAEGTTVIENAAREPEIVD-LCEF------LNKM---GAKITGAGS-NTITIEGVEKLH 223
Query: 273 SPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTEN 332
V D A F+ AA+TGG +T++ L+ L ++GA+V EN
Sbjct: 224 G-TEHSVIPDRIEAGTFLVAAAITGGEITIKNVRPDHLRA---VLAKLREIGAEVEVDEN 279
Query: 333 SVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVASWRVK 388
+ V +K L+AVD+ P D+ + A+G + I + V
Sbjct: 280 GIRVD------MRQKRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITE----TVF 329
Query: 389 ETERMIAICTELRKLGATVEEGPDYCVITPPEKLK---VAAIDTYDDHRMAMAFSLAACA 445
E M EL ++GA ++ + VI E+L V A D R A LA
Sbjct: 330 ENRFMHV--DELIRMGANIKLEGNTAVIHGVEQLSGAEVMATDL----RAGAALVLAGLV 383
Query: 446 DVPVTI 451
TI
Sbjct: 384 AEGETI 389
Score = 46.1 bits (110), Expect = 2e-05
Identities = 55/268 (20%), Positives = 91/268 (33%), Gaps = 58/268 (21%)
Query: 159 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA-LLM 217
RE I DL L ++GA I G + I G L G + + + + L+
Sbjct: 188 REPEIVDLCEFLNKMGAK---ITGAGSNTITIEGVEKLHGTEHSV---IPDRIEAGTFLV 241
Query: 218 AAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 275
AA + G + I+ D L +V L + G VE ++ R + K
Sbjct: 242 AAAITGGEITIKNVRPDHLRAV------LAKLREIGAEVEVDENGIRVD----MRQKRLK 291
Query: 276 NAFVEGDASSA------SYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 329
+E + F+A + GT + + + + L +MGA +
Sbjct: 292 AVDIETLPYPGFPTDLQAQFMALLSQAEGTSVIT---ETVFENRFMHVDELIRMGANIKL 348
Query: 330 TENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--AMTLAVVALFADGPTAIRDV----- 382
N+ + G + L +V D+ L + L A+G T + +V
Sbjct: 349 EGNTAVIHGVEQ-------LSGAEV---MATDLRAGAALVLAGLVAEGETIVHNVYHLDR 398
Query: 383 --ASWRVKETERMIAICTELRKLGATVE 408
K LR LGA +E
Sbjct: 399 GYEDLEEK-----------LRALGAKIE 415
Score = 33.0 bits (76), Expect = 0.35
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 261 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 319
D+ ++GG+ G + G ++A +A +T VT+ S DVK ++
Sbjct: 2 DKLVVEGGKPLS--GEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLS---DVKTTLDL 56
Query: 320 LEKMGAKVTWTENSVTVTGPP 340
L +GA+V N++ + P
Sbjct: 57 LRNLGARVERDNNTLEINTPN 77
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase
[Cell envelope biogenesis, outer membrane].
Length = 421
Score = 58.3 bits (142), Expect = 3e-09
Identities = 78/306 (25%), Positives = 123/306 (40%), Gaps = 64/306 (20%)
Query: 161 RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA---LL 216
RP+ DL + GL+ LGA+++ I + + GL G + L K+S + A ++
Sbjct: 122 RPV-DLHLKGLEALGAEIE-IEHGY---IEASAPKGLKGAHIYLD-KVS---VGATENIM 172
Query: 217 MAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 269
MAA LA G I EI+D L + L M G +E + + I+G +
Sbjct: 173 MAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GAKIEGAGT-STITIEGVE 221
Query: 270 KYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 329
K V D A F+ AA+TGG VT+E L+ L + G +
Sbjct: 222 KLHG-AEHSVIPDRIEAGTFLVAAAITGGDVTIENVRPEHLEA---VLAKLREAGVDIEE 277
Query: 330 TENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDVASW 385
E+ + V + L+AVD+ P D+ + A+G +
Sbjct: 278 GEDGIRVDMEGKR------LKAVDIKTLPYPGFPTDMQAQFMALLTVAEGTS-------- 323
Query: 386 RVKET---ERMIAICTELRKLGATVEEGPDYCVITPPEKLK---VAAIDTYDDHRMAMAF 439
+ ET R + + EL ++GA ++ + VI E+L V A D R + A
Sbjct: 324 VITETIFENRFMHV-PELIRMGANIKLEGNTAVIQGVEQLSGAPVMATDL----RASAAL 378
Query: 440 SLAACA 445
LA
Sbjct: 379 VLAGLV 384
Score = 44.0 bits (105), Expect = 1e-04
Identities = 66/263 (25%), Positives = 100/263 (38%), Gaps = 71/263 (26%)
Query: 189 RINGKGGLPGGKVKLSG-KLSSQYLTALLMAAPLALGNVEIEIIDKLISVPY---VEMTL 244
I G G G+V +SG K ++ LL A LA V + +VP VE L
Sbjct: 5 IIEG-GNPLNGEVTISGAKNAA---LPLLAATLLADEPVTLT------NVPDLSDVETML 54
Query: 245 KLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASS---------------ASYF 289
+L+ G VE D G+ +E DA + AS
Sbjct: 55 ELLRNLGAKVE----RD-------------GDGELEIDAPNINSTEAPYELVRKMRASIL 97
Query: 290 VAGAAVT-GGTVTVE---GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYG 345
V G + G V GC + D+ + LE +GA++ + + P
Sbjct: 98 VLGPLLARFGKAKVSLPGGCAIGARPVDLHL-KGLEALGAEIEIEHGYIEASAP------ 150
Query: 346 RKHLRAVDVNMNKMPDVAMT----LAVVALFADGPTAIRDVASWRVKETERMIAICTELR 401
K L+ + ++K V T +A A+ A+G T I + A +E E ++ + L
Sbjct: 151 -KGLKGAHIYLDK-VSVGATENIMMA--AVLAEGTTVIENAA----REPE-IVDLANFLN 201
Query: 402 KLGATVE-EGPDYCVITPPEKLK 423
K+GA +E G I EKL
Sbjct: 202 KMGAKIEGAGTSTITIEGVEKLH 224
Score = 40.6 bits (96), Expect = 0.002
Identities = 61/278 (21%), Positives = 97/278 (34%), Gaps = 78/278 (28%)
Query: 159 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKL------SGKLSSQYL 212
RE I DL L ++GA I G + I G L G + + +G
Sbjct: 189 REPEIVDLANFLNKMGAK---IEGAGTSTITIEGVEKLHGAEHSVIPDRIEAG------- 238
Query: 213 TALLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 270
L+AA + G+V IE + L +V L + GV +E + R ++ G++
Sbjct: 239 -TFLVAAAITGGDVTIENVRPEHLEAV------LAKLREAGVDIEEGEDGIRVDME-GKR 290
Query: 271 YKSPGNAFVEGDASSASY----------FVAGAAVTGGTVTVEGCGTSSL-QGDVKFAEV 319
K+ D + Y F+A V GT + T ++ +
Sbjct: 291 LKAV-------DIKTLPYPGFPTDMQAQFMALLTVAEGTSVI----TETIFENRFMHVPE 339
Query: 320 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--AMTLAVVALFADGPT 377
L +MGA + N+ + G + L V D+ + L + L A+G T
Sbjct: 340 LIRMGANIKLEGNTAVIQGVEQ-------LSGAPV---MATDLRASAALVLAGLVAEGET 389
Query: 378 AIRDV-------ASWRVKETERMIAICTELRKLGATVE 408
+ V K LR LGA +E
Sbjct: 390 IVNRVYHLDRGYERLEEK-----------LRALGAKIE 416
Score = 31.3 bits (72), Expect = 1.2
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 261 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKF-AEV 319
D+ I+GG G + G ++A +A + VT+ S DV+ E+
Sbjct: 2 DKLIIEGGNPLN--GEVTISGAKNAALPLLAATLLADEPVTLTNVPDLS---DVETMLEL 56
Query: 320 LEKMGAKVTWTENSVTVTGPPRD-----PYGR-KHLRA 351
L +GAKV + P PY + +RA
Sbjct: 57 LRNLGAKVERDGDGELEIDAPNINSTEAPYELVRKMRA 94
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 56.6 bits (138), Expect = 1e-08
Identities = 86/320 (26%), Positives = 127/320 (39%), Gaps = 93/320 (29%)
Query: 161 RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA---LL 216
RP+ DL + GL+ LGA+++ G V G L G + L S + A +L
Sbjct: 122 RPV-DLHLKGLEALGAEIEIEHGY----VEAKADGRLKGAHIVLD-FPS---VGATENIL 172
Query: 217 MAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG-- 267
MAA LA G I EI+D L + L M G + + + D I+G
Sbjct: 173 MAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GAKISGAGT-DTITIEGVE 221
Query: 268 ---GQKYKSPGNAFVEGD---ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLE 321
G ++ V D A ++ VA AA+TGG VT+ G L+ L
Sbjct: 222 RLHGAEHT------VIPDRIEA--GTFLVA-AAITGGDVTIRGARPEHLEA---VLAKLR 269
Query: 322 KMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK-------MPD---VAMTLAVVAL 371
+ GA++ E+ + V P R L+AVD+ K D M L
Sbjct: 270 EAGAEIEEGEDGIRVDMPGR-------LKAVDI---KTAPYPGFPTDMQAQFMALLTQ-- 317
Query: 372 FADGPTAIRDVASWRVKET---ERMIAICTELRKLGATVEEGPDYCVITPPEKLK---VA 425
A+G T++ + ET R + + EL ++GA +E V+ EKL V
Sbjct: 318 -AEG-TSV-------ITETIFENRFMHV-PELIRMGADIEVDGHTAVVRGVEKLSGAPVM 367
Query: 426 AIDTYDDHRMAMAFSLAACA 445
A D R + + LA
Sbjct: 368 ATDL----RASASLVLAGLV 383
Score = 30.4 bits (70), Expect = 2.3
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 16/71 (22%)
Query: 316 FAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD----VAMTLAVVAL 371
L +MGA + ++ V G + L V D ++ LA L
Sbjct: 335 HVPELIRMGADIEVDGHTAVVRGVEK-------LSGAPV---MATDLRASASLVLA--GL 382
Query: 372 FADGPTAIRDV 382
A+G T + +
Sbjct: 383 VAEGTTIVDRI 393
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 44.8 bits (107), Expect = 6e-05
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 26/150 (17%)
Query: 287 SYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 346
+Y + AA GG VT+ L+ F LE+MG +V E+S+ V +
Sbjct: 237 TYMILAAA-CGGGVTINNVIPEHLES---FIAKLEEMGVRVEVNEDSIFV-------EKQ 285
Query: 347 KHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD-VASWRVKETERMIAICTELR 401
+L+AVD+ P D+ L + L A+G + + D + R K + EL+
Sbjct: 286 GNLKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKRFKHVD-------ELK 338
Query: 402 KLGATVEEGPDYCVITPPEKL---KVAAID 428
++GA ++ +IT P KL KV A D
Sbjct: 339 RMGANIKVEGRSAIITGPSKLTGAKVKATD 368
>gnl|CDD|221320 pfam11927, DUF3445, Protein of unknown function (DUF3445). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 264 to 418
amino acids in length. This protein has a conserved RLP
sequence motif. This protein has two completely
conserved R residues that may be functionally important.
Length = 245
Score = 35.6 bits (83), Expect = 0.033
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 16/90 (17%)
Query: 20 AQLRSNQKHRKLYCNPSERFPVR-LLCRVLSL----YPIGFFFSLPSLSLSFQGTTVVDN 74
A+L + R L P LL VL YP F SL+ G N
Sbjct: 26 ARLLAEHPDRVLALLPEAEPAAWELLELVLEYLPARYPQYF-------SLTRDGDRTWHN 78
Query: 75 LLSSEDIH----HMLDALKKLGLNVEEDFA 100
L+ E D L+ LG V+EDF
Sbjct: 79 RLTGETFPLTAGDPEDPLETLGRLVQEDFL 108
>gnl|CDD|225128 COG2218, FwdC, Formylmethanofuran dehydrogenase subunit C [Energy
production and conversion].
Length = 264
Score = 33.1 bits (76), Expect = 0.25
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 224 GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI----------QGGQKYKS 273
G EI K +SV + + L + F V DS I + G++ +
Sbjct: 28 GKSAEEI--KALSVYFGNLVEPLGDFFEVEGNGGDSGADTKISIDGDVSRVKRIGERMSA 85
Query: 274 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGA 325
G VEGD GA + GG + V G S ++K E+ A
Sbjct: 86 -GEIIVEGDVGMH----VGAGMKGGKIVVNGNADSWAGIEMKGGEIKIFGNA 132
>gnl|CDD|238338 cd00604, IPT_CGTD, IPT domain (domain D) of cyclodextrin
glycosyltransferase (CGTase) and similar enzymes. These
enzymes are involved in the enzymatic hydrolysis of
alpha-1,4 linkages of starch polymers and belong to the
glycosyl hydrolase family 13. Most consist of three
domains (A,B,C) but CGTase is more complex and has two
additional domains (D,E). The function of the IPT/D
domain is unknown.
Length = 81
Score = 30.0 bits (68), Expect = 0.48
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 297 GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT-WTENSVTVTGP 339
G TVT+ G G S G V F A+V W++ S+ V P
Sbjct: 14 GNTVTISGEGFGSTGGTVYFGGT----AAEVLSWSDTSIVVEVP 53
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 31.2 bits (71), Expect = 1.4
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 86 DALKKLGLNVEED---FAMKRAI--VEGCGGLFPLAKQQTGE-----IE-LFLGNAGTAM 134
A ++L VE++ AM++A VE L AK + G +E LF N G +
Sbjct: 375 KAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPV 434
Query: 135 RPLTAAVTAAGGNLSYIL 152
+PL A A+GG LS ++
Sbjct: 435 KPL--AKVASGGELSRVM 450
>gnl|CDD|240523 cd13150, DAXX_histone_binding, Histone binding domain of the
death-domain associated protein (DAXX). DAXX is a
nuclear protein that modulates transcription of various
genes and is involved in cell death and/or the
suppression of growth. DAXX is also a histone chaperone
conserved in Metazoa that acts specifically on histone
H3.3. This alignment models a functional domain of DAXX
that interacts with the histone H3.3-H4 dimer, and in
doing so competes with DNA binding and interactions
between the histone chaperone ASF1/CIA and the H3-H4
dimer.
Length = 198
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 459 KTFPDYFDVLDSVTK 473
KTFPD+ D+L V K
Sbjct: 95 KTFPDFHDILKIVQK 109
>gnl|CDD|219600 pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain.
Copper amine oxidases catalyze the oxidative
deamination of primary amines to the corresponding
aldehydes, while reducing molecular oxygen to hydrogen
peroxide. These enzymes are dimers of identical
subunits, each comprising four domains. The N-terminal
domain, which is absent in some amine oxidases, consists
of a five-stranded antiparallel beta sheet twisted
around an alpha helix. The D1 domains from the two
subunits comprise the 'stalk' of the mushroom-shaped
dimer, and interact with each other but do not pack
tightly against each other.
Length = 93
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 314 VKFAEVLEKMGAKVTWTENSVTVT 337
V + E +GAKV+W + TVT
Sbjct: 7 VPLRAIAEALGAKVSWDGKTKTVT 30
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 28.2 bits (64), Expect = 3.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 154 GVPRMRERPIGDLVTGLKQLGADVD 178
+RE P D++ L + GA+V
Sbjct: 10 NTDDLRESPALDIIEELLEAGAEVV 34
>gnl|CDD|221396 pfam12051, DUF3533, Protein of unknown function (DUF3533). This
family of transmembrane proteins is functionally
uncharacterized. This protein is found in bacteria and
eukaryotes. Proteins in this family are typically
between 393 to 772 amino acids in length.
Length = 379
Score = 29.9 bits (68), Expect = 3.2
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 6 IIIQFVQSGLQLQLAQLRSNQKHRKLYCNPSERFPVRLLCRVLSLYPIGFFFSLPSLSLS 65
II+ F Q L L + HRKL RLL +LS + + FFSL +SL+
Sbjct: 214 IILTFFQFMF---LGPLHAEMGHRKL--KFRHLLIYRLLISILSYFFLSLFFSL--VSLA 266
Query: 66 FQ 67
FQ
Sbjct: 267 FQ 268
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase. RNA cyclases
are a family of RNA-modifying enzymes that are conserved
in all cellular organisms. They catalyze the
ATP-dependent conversion of the 3'-phosphate to the
2',3'-cyclic phosphodiester at the end of RNA, in a
reaction involving formation of the covalent AMP-cyclase
intermediate. The structure of RTC demonstrates that
RTCs are comprised two domain. The larger domain
contains an insert domain of approximately 100 amino
acids.
Length = 330
Score = 29.5 bits (67), Expect = 4.1
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 211 YLTALLMAAPLALGNVEIEII-----DKLISVPYVEM-TLKLMERFGVFVE 255
L LL A G I + V Y+ TL L+E+FG+ E
Sbjct: 95 VLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGE 145
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 28.7 bits (65), Expect = 4.9
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 277 AFVEGDASSASYFVAGAA---VTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 328
AFV G A+SA+Y++A AA V T V G + V ++ LEK G KVT
Sbjct: 78 AFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASH--VDQSKALEKAGLKVT 130
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The
structure of this protein revealed a bound fatty-acid
molecule in a pocket between the two protein domains.
The structure indicates that this family has the
molecular function of fatty-acid binding and may play a
role in the cellular functions of fatty acid transport
or metabolism.
Length = 211
Score = 28.7 bits (65), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 203 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLME 248
+S LS Y +A L V++ +ID K +S+ + L+
Sbjct: 18 ISSGLSGTYQSAKQAKE--ELPGVKVRVIDSKSVSMGLGLLVLEAAR 62
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 29.1 bits (66), Expect = 6.4
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 13/48 (27%)
Query: 339 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWR 386
RDP+ LRA+ A+ L VVAL + V
Sbjct: 123 ARRDPFA---LRAL----------ALLLLVVALAFGSSGRVGSVFDAF 157
>gnl|CDD|222472 pfam13954, PapC_N, PapC N-terminal domain. The PapC N-terminal
domain is a structural domain found at the N-terminus of
the E. coli PapC protein. Pili are assembled using the
chaperone usher system. In E.coli this is composed of
the chaperone PapD and the usher PapC. This domain
represents the N-terminal domain from PapC and its
homologues. This domain is involved in substrate
binding.
Length = 145
Score = 28.0 bits (63), Expect = 7.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 88 LKKLGLNVEEDFAMKRAIVEGC 109
L KLG+N+E A++++ E C
Sbjct: 66 LSKLGINIEAFPALQQSNDEQC 87
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 28.7 bits (65), Expect = 7.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 89 KKLGLNVEEDFAMKRAIVEG 108
KK G++ + DFA K I+EG
Sbjct: 40 KKGGVDPDNDFAPKYEIIEG 59
>gnl|CDD|176452 cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 263
Score = 28.4 bits (64), Expect = 7.7
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 395 AICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDP 454
C E+RK G +I PE+ + Y DH+ A S A T D
Sbjct: 190 LACKEIRKGVKKALSGLSRDLIELPEEFTLEV--KYKDHKEAYRASFYPGA----TQVDG 243
Query: 455 SCTRKTFPDYFDVL 468
R DYFDVL
Sbjct: 244 YTIRFETADYFDVL 257
>gnl|CDD|113755 pfam04996, AstB, Succinylarginine dihydrolase. This enzyme
transforms N(2)-succinylglutamate into succinate and
glutamate. This is the fifth and last step in arginine
catabolism by the arginine succinyltransferase pathway.
Length = 439
Score = 28.7 bits (64), Expect = 8.1
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 325 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMN-----KMPDVAMTLAVVALFAD 374
A WT N+ TV GR HL ++N + PD TL +F D
Sbjct: 102 ASSMWTANAATVLPSADTADGRVHLTTANLNTKLHRSLEAPDTYRTLR--RVFND 154
>gnl|CDD|224226 COG1307, DegV, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 282
Score = 28.0 bits (63), Expect = 9.4
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 203 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLME 248
+S LS Y +A L A + ++ +ID K +S+ + L+ E
Sbjct: 89 ISSGLSGTYQSAQLAAE--LVEGAKVHVIDSKSVSMGLGFLVLEAAE 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,672,338
Number of extensions: 2466165
Number of successful extensions: 2853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2685
Number of HSP's successfully gapped: 72
Length of query: 474
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 374
Effective length of database: 6,502,202
Effective search space: 2431823548
Effective search space used: 2431823548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)