RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011947
(474 letters)
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 237 bits (606), Expect = 3e-74
Identities = 197/418 (47%), Positives = 261/418 (62%), Gaps = 19/418 (4%)
Query: 58 SLPSLSLS--FQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 115
S +L L+ G TV+ NLL S+D+ HML+AL LG++ R + G GG
Sbjct: 25 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHA 84
Query: 116 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 175
+ L G+ +L G PRM+ERPIG LV L+ GA
Sbjct: 85 EGALELFLGNAGTAMRPLAAALC------LGSNDIVLTGEPRMKERPIGHLVDALRLGGA 138
Query: 176 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 235
+ + N PP+R+ +GG GG V + G +SSQ+LTALLM APLA + I I L+
Sbjct: 139 KITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLV 196
Query: 236 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 295
S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SPG VEGDASSASYF+A AA+
Sbjct: 197 SKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAI 255
Query: 296 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVN 355
GGTV V G G +S+QGD++FA+VLEKMGA + W ++ R L A+D++
Sbjct: 256 KGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD--------YISCTRGELNAIDMD 307
Query: 356 MNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCV 415
MN +PD AMT+A ALFA G T +R++ +WRVKET+R+ A+ TELRK+GA VEEG DY
Sbjct: 308 MNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIR 367
Query: 416 ITPPEKLKVAAIDTYDDHRMAMAFSLAACADVPVTIKDPSCTRKTFPDYFDVLDSVTK 473
ITPPEKL A I TY+DHRMAM FSL A +D PVTI DP CT KTFPDYF+ L +++
Sbjct: 368 ITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQ 425
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 224 bits (571), Expect = 5e-69
Identities = 95/419 (22%), Positives = 177/419 (42%), Gaps = 22/419 (5%)
Query: 58 SLPSLSLS--FQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 115
S S+ +G T V ++L ED+ + + LG+ +E+ V+G G
Sbjct: 23 SHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK--DGVITVQGVGMAGLK 80
Query: 116 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 175
A Q + GN+GT++R ++ + A + D + +RP+ + LK++G
Sbjct: 81 APQNALNM----GNSGTSIRLISGVLAGADFEVEMFGD--DSLSKRPMDRVTLPLKKMGV 134
Query: 176 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 235
+ + PP+R+ G L +L S+Q +AL+ AA A G I +
Sbjct: 135 SISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFAALQAKGESVIIEKE--- 190
Query: 236 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 295
T ++++FG S + +QG QK V GD SSA++++ +
Sbjct: 191 --YTRNHTEDMLQQFGG--HLSVDGKKITVQGPQKLT-GQKVVVPGDISSAAFWLVAGLI 245
Query: 296 TGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 354
+ + ++ G + + + ++T + + K
Sbjct: 246 APNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGA 305
Query: 355 NMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYC 414
+ ++ D +A++A A G T I+D +VKET+R+ + L +GA + D
Sbjct: 306 LIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGM 365
Query: 415 VITPPEKLKVAAIDTYDDHRMAMAFSLAA--CADVPVTIKDPSCTRKTFPDYFDVLDSV 471
+I L A ++T+ DHR+ M ++AA AD V + ++P +FD L+S+
Sbjct: 366 IIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESL 424
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 175 bits (443), Expect = 2e-50
Identities = 79/417 (18%), Positives = 141/417 (33%), Gaps = 35/417 (8%)
Query: 58 SLPSLSLS--FQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 115
+LP L + + + N+ +DI + L +LG VE D ++
Sbjct: 25 ALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERD---GSVWIDASNVNNFS 81
Query: 116 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 175
A +L + + A G L G + RP+ + GL++LGA
Sbjct: 82 APY-----DLVKTMRASIWALGP--LVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGA 134
Query: 176 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 235
++ G V G L G + K+S ++ AA LA G II+
Sbjct: 135 EIKLEEGYVKASV----NGRLKGAHIV-MDKVSVGATVTIMSAATLAEGT---TIIENAA 186
Query: 236 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 295
P + T + G + + R I+G ++ + + ++ VA AA+
Sbjct: 187 REPEIVDTANFLVALGAKISGQGTD-RITIEGVERLGGGVYRVLPDRIETGTFLVA-AAI 244
Query: 296 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVN 355
+GG + +L L + GA + E+ +++ + P V
Sbjct: 245 SGGKIVCRNAQPDTLD---AVLAKLREAGADIETGEDWISLDMHGKRPKA--------VT 293
Query: 356 MNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCV 415
+ P A + A F E EL ++GA E + +
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVI 353
Query: 416 ITPPEKLKVAAIDTYDDHRMAMAFSLAA-CADVPVTIKDPSCTRKTFPDYFDVLDSV 471
EKL A + D R + + LA A+ + + + D L ++
Sbjct: 354 CHGVEKLSGAQV-MATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRAL 409
Score = 28.7 bits (63), Expect = 1.6
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 247 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 306
+ R G E + G +K G + D +++ V + GT V+
Sbjct: 338 LIRMGAHAEIES--NTVICHGVEKLS--GAQVMATDLRASASLVLAGCIAEGTTVVDRIY 393
Query: 307 TSSLQGDVKFAEVLEKMGAKVTWTE 331
+G + + L +GA + +
Sbjct: 394 HID-RGYERIEDKLRALGANIERVK 417
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 216
Score = 113 bits (283), Expect = 9e-30
Identities = 88/222 (39%), Positives = 122/222 (54%), Gaps = 12/222 (5%)
Query: 59 LPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQ 118
L +L+ G TV+ NLL S+D+ HML+AL LG++ R + G GG
Sbjct: 7 LAALA---HGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLH---- 59
Query: 119 QTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVD 178
E L L A G+ +L G PRM+ERPIG LV L+ GA +
Sbjct: 60 --AEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKIT 117
Query: 179 CILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVP 238
+ N PP+R+ +GG GG V + G +SSQ+LTALLM APLA + I I L+S P
Sbjct: 118 YLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKP 175
Query: 239 YVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVE 280
Y+++TL LM+ FGV +E+ + +F ++GGQ Y+SPG VE
Sbjct: 176 YIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSPGTYLVE 216
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 10/194 (5%)
Query: 151 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 210
+L + + + ++ L LG + I G L ++
Sbjct: 16 VLTNLLDSDD--VRHMLNALTALGVSYT-LSADRTRCEIIGNGGPLHAEGALELFLGNAG 72
Query: 211 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 270
L AA N + + + + + + G + + + + ++
Sbjct: 73 TAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG 132
Query: 271 YKSPGNAFVEGDASS----ASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAK 326
+ GN V+G SS A A A + ++G S D+ +++ G +
Sbjct: 133 FT-GGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDI-TLNLMKTFGVE 190
Query: 327 VTWTE-NSVTVTGP 339
+ V G
Sbjct: 191 IENQHYQQFVVKGG 204
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 167
Score = 31.0 bits (69), Expect = 0.18
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 389 ETERMIAICTELRKLGATVEEGPDYCVITPPEKLKVAAIDTYDD 432
E E + + GA P I E + +A + Y D
Sbjct: 111 EVEDAESAFSISVANGAIPSSPP----IVLNEAVTIAEVKLYGD 150
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase,
domain D {Bacillus circulans, different strains [TaxId:
1397]}
Length = 87
Score = 28.4 bits (63), Expect = 0.53
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 297 GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 340
G T+T++G G S +G V F +W + + V P
Sbjct: 16 GVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPA 59
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 29.7 bits (66), Expect = 0.85
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 62 LSLSF-QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 116
+S+ F G +NLL+ + D+LK +N+ + + G GGL LA
Sbjct: 64 ISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA 119
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 29.4 bits (66), Expect = 1.0
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 77 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 129
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 188 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 246
Query: 130 AGTAMRPLTAAVTAA 144
G ++ T V
Sbjct: 247 RG-CVQIFTGVVEKV 260
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 29.2 bits (65), Expect = 1.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 62 LSLSF-QGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 116
LSL F G T+ + +++ + +A +LGL++EE ++ G GGL LA
Sbjct: 74 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLA 129
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 28.7 bits (62), Expect = 1.6
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 57 FSLPSLSLSFQGTTVVDNLLSSEDIHHMLDALKKL 91
FS+ SL + +++ED + L +
Sbjct: 3 FSIEGKSLKL-------DAITTEDEKSVFAVLLED 30
>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
[TaxId: 51453]}
Length = 434
Score = 28.3 bits (63), Expect = 2.4
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 257 SDSWDRFFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGTVTVEGCGTSSL 310
S + +R+++Q G ++ P G+ + Y A A GG+ + G +
Sbjct: 297 SGAINRYYVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQF 352
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase,
domain D {Thermoanaerobacterium [TaxId: 28895]}
Length = 83
Score = 26.0 bits (57), Expect = 3.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 296 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 340
G T+T++G G + G V F G V+W + V V P
Sbjct: 16 AGQTITIDGRGFGTTSGQVLFGST---AGTIVSWDDTEVKVKVPS 57
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 26.9 bits (59), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 76 LSSEDIHHMLDALKKLGLNVEEDF 99
L E +LD LK+L +E +F
Sbjct: 116 LGKEKSSKILDYLKELKGVMERNF 139
>d1d6za4 d.82.1.1 (A:7-90) Copper amine oxidase, domain N
{Escherichia coli [TaxId: 562]}
Length = 84
Score = 26.0 bits (57), Expect = 3.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 314 VKFAEVLEKMGAKVTWTENSVTVT 337
V + L++ GA V W + + T
Sbjct: 2 VPMDKTLKEFGADVQWDDYAQLFT 25
>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId:
68825]}
Length = 435
Score = 26.7 bits (59), Expect = 6.5
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 262 RFFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGT 299
RF+IQ P + V G++ + + A G T
Sbjct: 305 RFYIQNSNVIPQPNSDISGVTGNSITTEFCTAQKQAFGDT 344
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 26.2 bits (57), Expect = 6.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 76 LSSEDIHHMLDALKKLGLNVEEDF 99
LS +I + D L ++ NV ED+
Sbjct: 115 LSEVEISQLADYLVRMRKNVSEDW 138
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 26.4 bits (57), Expect = 6.8
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 269 QKYKSPGNAFVEGDASSASYFVAGAAV---TGGTVTVEGCGTSSLQGDVKFAEVLEKMGA 325
Q Y + N + SY V G V + + G G S + D+ +
Sbjct: 5 QDYLNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADL-IRDFSLTWNW 63
Query: 326 KVTW 329
+V
Sbjct: 64 EVEV 67
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 246
Score = 26.2 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 53 IGFF-FSLPSLSLSFQGTTVVDNLLSS 78
F + LP +SF G TV+ NLLS+
Sbjct: 112 TAFMGYVLPWGQMSFWGATVITNLLSA 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,795,959
Number of extensions: 85890
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 20
Length of query: 474
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,185,626
Effective search space: 456466010
Effective search space used: 456466010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)