Query 011948
Match_columns 474
No_of_seqs 406 out of 2357
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0571 Asparagine synthase (g 100.0 7E-117 1E-121 871.8 31.8 424 1-440 116-541 (543)
2 PLN02549 asparagine synthase ( 100.0 1E-106 3E-111 868.5 42.7 453 1-454 116-568 (578)
3 PTZ00077 asparagine synthetase 100.0 1E-105 3E-110 863.1 40.6 441 1-441 124-570 (586)
4 PRK09431 asnB asparagine synth 100.0 1E-102 3E-107 836.5 38.4 433 1-439 117-554 (554)
5 TIGR03104 trio_amidotrans aspa 100.0 2.1E-70 4.5E-75 593.8 31.3 358 1-390 118-564 (589)
6 TIGR03108 eps_aminotran_1 exos 100.0 1.3E-64 2.8E-69 554.5 31.5 365 1-396 118-610 (628)
7 COG0367 AsnB Asparagine syntha 100.0 2.3E-64 4.9E-69 539.1 25.9 406 1-436 117-539 (542)
8 TIGR01536 asn_synth_AEB aspara 100.0 1.5E-63 3.3E-68 528.6 30.9 317 1-338 116-467 (467)
9 cd01991 Asn_Synthase_B_C The C 100.0 9.8E-43 2.1E-47 343.2 18.6 227 96-341 1-269 (269)
10 PF00733 Asn_synthase: Asparag 100.0 7.2E-41 1.6E-45 325.6 19.3 225 94-335 1-255 (255)
11 KOG0573 Asparagine synthase [A 100.0 7.2E-31 1.6E-35 262.6 19.7 322 2-342 114-500 (520)
12 cd01910 Wali7 This domain is p 99.8 1.4E-20 3E-25 177.5 10.3 85 1-86 124-209 (224)
13 cd01909 betaLS_CarA_N Glutamin 99.8 6E-19 1.3E-23 165.5 9.0 75 1-78 100-199 (199)
14 cd00712 AsnB Glutamine amidotr 99.6 8.2E-16 1.8E-20 147.6 9.0 76 1-77 116-220 (220)
15 cd01996 Alpha_ANH_like_III Thi 99.5 3.4E-13 7.4E-18 122.0 12.4 126 112-250 3-132 (154)
16 TIGR03573 WbuX N-acetyl sugar 99.4 1.3E-12 2.9E-17 133.4 15.0 117 112-239 61-179 (343)
17 PF13537 GATase_7: Glutamine a 99.4 1.9E-13 4.2E-18 119.6 5.7 51 1-51 75-125 (125)
18 cd03766 Gn_AT_II_novel Gn_AT_I 99.2 2.4E-11 5.1E-16 113.2 6.9 61 1-63 118-179 (181)
19 cd00715 GPATase_N Glutamine am 99.2 9.2E-11 2E-15 115.0 8.7 70 1-72 153-223 (252)
20 PRK08341 amidophosphoribosyltr 99.1 3.6E-10 7.8E-15 118.6 13.2 116 1-120 154-283 (442)
21 PRK06388 amidophosphoribosyltr 99.1 8.8E-10 1.9E-14 116.6 12.8 116 1-119 171-302 (474)
22 PRK09123 amidophosphoribosyltr 99.1 1.2E-09 2.7E-14 115.8 13.3 122 1-128 174-310 (479)
23 PF12481 DUF3700: Aluminium in 99.1 4E-10 8.6E-15 105.0 8.1 81 1-82 128-209 (228)
24 PRK07631 amidophosphoribosyltr 99.0 3.8E-10 8.2E-15 119.3 8.1 115 1-118 163-293 (475)
25 TIGR00268 conserved hypothetic 99.0 8.3E-10 1.8E-14 108.3 10.0 115 105-237 7-124 (252)
26 PRK07847 amidophosphoribosyltr 99.0 3.8E-10 8.2E-15 120.1 8.1 116 1-119 183-313 (510)
27 PRK08525 amidophosphoribosyltr 99.0 5.2E-10 1.1E-14 117.9 8.7 66 1-68 153-219 (445)
28 PRK07272 amidophosphoribosyltr 99.0 3.2E-09 7E-14 112.5 14.1 69 1-71 164-233 (484)
29 cd00553 NAD_synthase NAD+ synt 99.0 4.6E-09 1E-13 102.7 13.8 134 92-238 7-147 (248)
30 cd00714 GFAT Glutamine amidotr 99.0 5.8E-10 1.2E-14 106.8 6.9 62 1-66 152-214 (215)
31 TIGR00552 nadE NAD+ synthetase 99.0 1.7E-09 3.8E-14 105.9 9.6 135 90-238 4-145 (250)
32 PRK00876 nadE NAD synthetase; 99.0 4.1E-09 9E-14 106.4 12.4 81 90-181 14-98 (326)
33 cd00352 Gn_AT_II Glutamine ami 99.0 9E-10 2E-14 104.9 7.0 65 1-65 155-220 (220)
34 PLN02440 amidophosphoribosyltr 99.0 1.3E-09 2.8E-14 115.9 8.5 68 1-70 153-221 (479)
35 cd01907 GlxB Glutamine amidotr 99.0 1.2E-09 2.5E-14 107.0 7.1 63 1-66 182-248 (249)
36 PRK06781 amidophosphoribosyltr 98.9 2.2E-09 4.8E-14 113.6 9.1 123 1-129 163-299 (471)
37 PRK14561 hypothetical protein; 98.9 6.7E-09 1.4E-13 97.8 11.3 106 112-233 2-107 (194)
38 PRK13980 NAD synthetase; Provi 98.9 7.4E-09 1.6E-13 102.3 12.0 133 93-238 15-149 (265)
39 PRK07349 amidophosphoribosyltr 98.9 2.2E-09 4.7E-14 114.1 8.6 116 1-118 188-322 (500)
40 TIGR01134 purF amidophosphorib 98.9 4.2E-09 9.1E-14 111.1 8.7 116 1-119 154-284 (442)
41 COG1606 ATP-utilizing enzymes 98.9 2.5E-08 5.4E-13 95.3 12.5 110 110-236 17-129 (269)
42 cd01990 Alpha_ANH_like_I This 98.9 1.4E-08 3E-13 96.1 10.7 109 113-237 1-112 (202)
43 PRK00331 glucosamine--fructose 98.9 4.7E-09 1E-13 115.4 8.4 68 1-72 153-221 (604)
44 PRK05793 amidophosphoribosyltr 98.9 4.7E-09 1E-13 111.4 7.8 68 1-71 168-236 (469)
45 PRK09246 amidophosphoribosyltr 98.8 4.5E-09 9.7E-14 112.5 7.1 68 1-69 162-233 (501)
46 TIGR01135 glmS glucosamine--fr 98.8 9.6E-09 2.1E-13 113.1 7.8 68 1-72 152-220 (607)
47 PRK00143 mnmA tRNA-specific 2- 98.7 6.6E-08 1.4E-12 99.1 11.6 112 112-234 2-130 (346)
48 cd01993 Alpha_ANH_like_II This 98.7 1E-07 2.2E-12 88.4 11.5 116 112-235 1-121 (185)
49 cd01998 tRNA_Me_trans tRNA met 98.7 1.2E-07 2.5E-12 97.4 12.2 112 112-234 1-127 (349)
50 PRK04527 argininosuccinate syn 98.6 2.1E-07 4.4E-12 96.1 11.9 108 111-229 3-118 (400)
51 COG0482 TrmU Predicted tRNA(5- 98.6 1.7E-07 3.7E-12 94.6 11.0 110 110-230 3-126 (356)
52 PF06508 QueC: Queuosine biosy 98.6 5.5E-07 1.2E-11 85.8 13.7 156 113-296 2-174 (209)
53 PTZ00323 NAD+ synthase; Provis 98.6 5.4E-07 1.2E-11 89.9 14.1 137 97-239 31-181 (294)
54 PRK11106 queuosine biosynthesi 98.6 2.8E-07 6.1E-12 88.9 11.5 146 112-285 3-162 (231)
55 PTZ00295 glucosamine-fructose- 98.6 6.1E-08 1.3E-12 107.2 7.6 72 1-76 183-255 (640)
56 PRK14665 mnmA tRNA-specific 2- 98.6 1.9E-07 4.2E-12 95.8 10.4 113 108-231 3-124 (360)
57 PF03054 tRNA_Me_trans: tRNA m 98.6 1.4E-07 3E-12 96.5 7.9 113 112-235 2-131 (356)
58 COG0603 Predicted PP-loop supe 98.5 1.6E-07 3.5E-12 88.9 7.3 117 112-239 4-133 (222)
59 PF02540 NAD_synthase: NAD syn 98.5 9.5E-07 2.1E-11 86.1 11.9 134 93-239 3-139 (242)
60 PRK00509 argininosuccinate syn 98.5 7.3E-07 1.6E-11 92.3 11.2 109 112-230 4-119 (399)
61 PRK13981 NAD synthetase; Provi 98.5 1.2E-06 2.7E-11 95.1 13.5 137 92-239 260-405 (540)
62 TIGR00420 trmU tRNA (5-methyla 98.5 1E-06 2.2E-11 90.5 11.5 108 112-230 2-127 (352)
63 PRK14664 tRNA-specific 2-thiou 98.5 1.7E-06 3.8E-11 88.7 12.5 111 110-232 5-120 (362)
64 TIGR00364 exsB protein. This p 98.4 7.9E-07 1.7E-11 84.2 9.3 153 114-294 2-170 (201)
65 TIGR00884 guaA_Cterm GMP synth 98.4 1.5E-06 3.3E-11 87.6 11.8 109 111-233 17-130 (311)
66 cd01712 ThiI ThiI is required 98.4 2.3E-06 5E-11 79.2 11.2 108 112-232 1-115 (177)
67 PRK08349 hypothetical protein; 98.4 3.1E-06 6.6E-11 80.0 11.2 110 112-233 2-118 (198)
68 PRK00919 GMP synthase subunit 98.4 3E-06 6.4E-11 85.1 11.5 123 95-233 7-132 (307)
69 cd01999 Argininosuccinate_Synt 98.4 3.2E-06 6.9E-11 87.5 11.8 108 113-230 1-116 (385)
70 PRK00768 nadE NAD synthetase; 98.4 4.9E-06 1.1E-10 81.8 12.4 141 93-239 23-170 (268)
71 PLN00200 argininosuccinate syn 98.3 3.5E-06 7.6E-11 87.4 11.2 110 111-230 6-123 (404)
72 TIGR02432 lysidine_TilS_N tRNA 98.3 6.6E-06 1.4E-10 76.8 12.0 108 112-234 1-113 (189)
73 PRK13820 argininosuccinate syn 98.3 4.6E-06 9.9E-11 86.4 11.7 109 112-230 4-119 (394)
74 PRK10696 tRNA 2-thiocytidine b 98.3 1.6E-05 3.4E-10 78.3 13.9 132 93-234 10-145 (258)
75 cd01986 Alpha_ANH_like Adenine 98.2 5.7E-06 1.2E-10 69.6 9.0 77 113-236 1-77 (103)
76 COG0037 MesJ tRNA(Ile)-lysidin 98.2 9.8E-06 2.1E-10 81.1 11.2 126 94-235 5-135 (298)
77 cd00713 GltS Glutamine amidotr 98.2 4.6E-06 9.9E-11 86.5 8.6 66 2-69 326-394 (413)
78 PRK00074 guaA GMP synthase; Re 98.2 9.4E-06 2E-10 87.4 11.4 125 94-233 200-329 (511)
79 TIGR00032 argG argininosuccina 98.2 9.9E-06 2.1E-10 84.1 10.4 105 112-230 1-116 (394)
80 cd01992 PP-ATPase N-terminal d 98.1 2.1E-05 4.7E-10 72.9 11.3 104 112-233 1-109 (185)
81 cd01997 GMP_synthase_C The C-t 98.1 1.1E-05 2.3E-10 80.9 9.5 108 112-233 1-113 (295)
82 PRK01565 thiamine biosynthesis 98.1 1.8E-05 3.9E-10 82.6 10.9 109 110-234 176-293 (394)
83 PLN02347 GMP synthetase 98.1 1.9E-05 4E-10 85.3 11.0 80 101-190 220-302 (536)
84 cd01995 ExsB ExsB is a transcr 98.1 2.7E-05 5.8E-10 71.5 10.0 87 112-233 1-89 (169)
85 PRK02628 nadE NAD synthetase; 98.0 5.7E-05 1.2E-09 84.2 13.6 144 92-241 341-495 (679)
86 KOG2805 tRNA (5-methylaminomet 98.0 3.8E-05 8.1E-10 75.4 10.0 117 111-238 6-139 (377)
87 COG2117 Predicted subunit of t 98.0 2.7E-05 5.8E-10 69.5 7.8 62 112-183 2-63 (198)
88 TIGR03679 arCOG00187 arCOG0018 98.0 5.5E-05 1.2E-09 72.6 10.5 88 115-231 2-97 (218)
89 PF00764 Arginosuc_synth: Argi 98.0 5.8E-05 1.3E-09 77.8 11.2 109 115-233 2-121 (388)
90 TIGR00342 thiazole biosynthesi 97.9 3.3E-05 7.2E-10 80.0 9.4 111 109-233 171-288 (371)
91 PTZ00394 glucosamine-fructose- 97.9 1.8E-05 4E-10 87.8 8.0 73 1-77 187-280 (670)
92 PRK08384 thiamine biosynthesis 97.9 6.6E-05 1.4E-09 77.7 11.2 110 109-233 179-297 (381)
93 cd01994 Alpha_ANH_like_IV This 97.9 7.8E-05 1.7E-09 70.2 10.8 92 112-232 1-100 (194)
94 PRK05370 argininosuccinate syn 97.9 8.3E-05 1.8E-09 77.2 11.8 118 105-233 6-138 (447)
95 PF01171 ATP_bind_3: PP-loop f 97.9 6.8E-05 1.5E-09 69.8 10.2 103 113-233 2-109 (182)
96 cd01713 PAPS_reductase This do 97.8 9.6E-05 2.1E-09 66.9 9.4 115 112-235 1-120 (173)
97 PLN02981 glucosamine:fructose- 97.8 3.6E-05 7.8E-10 85.8 7.7 69 1-72 181-273 (680)
98 COG0171 NadE NAD synthase [Coe 97.8 0.0005 1.1E-08 67.7 13.6 139 94-239 7-155 (268)
99 PRK05253 sulfate adenylyltrans 97.7 0.00045 9.8E-09 69.4 13.1 109 111-233 28-140 (301)
100 PRK01269 tRNA s(4)U8 sulfurtra 97.7 0.00022 4.8E-09 76.5 10.8 111 110-234 177-294 (482)
101 COG0034 PurF Glutamine phospho 97.7 0.00012 2.7E-09 75.6 8.1 65 1-67 160-225 (470)
102 COG1365 Predicted ATPase (PP-l 97.6 0.00035 7.6E-09 65.3 9.7 120 94-238 34-169 (255)
103 COG0137 ArgG Argininosuccinate 97.6 0.00052 1.1E-08 69.7 11.7 114 110-233 4-128 (403)
104 PF02568 ThiI: Thiamine biosyn 97.6 0.00019 4.2E-09 67.5 8.0 110 110-233 3-121 (197)
105 PRK08576 hypothetical protein; 97.6 0.00063 1.4E-08 71.5 12.5 120 95-232 217-342 (438)
106 PRK10660 tilS tRNA(Ile)-lysidi 97.5 0.00072 1.6E-08 71.6 11.7 76 101-181 6-85 (436)
107 COG0367 AsnB Asparagine syntha 97.5 8.9E-05 1.9E-09 80.4 4.7 91 270-372 419-511 (542)
108 KOG0572 Glutamine phosphoribos 97.5 0.00033 7.1E-09 70.6 7.7 68 1-70 163-235 (474)
109 PLN02339 NAD+ synthase (glutam 97.5 0.0015 3.3E-08 73.1 13.8 89 93-181 329-449 (700)
110 PRK11750 gltB glutamate syntha 97.0 0.0019 4.1E-08 75.9 8.2 65 2-68 336-403 (1485)
111 TIGR02039 CysD sulfate adenyly 96.9 0.0078 1.7E-07 60.2 11.0 120 96-233 9-132 (294)
112 COG0519 GuaA GMP synthase, PP- 96.8 0.012 2.6E-07 57.4 10.5 75 94-178 6-83 (315)
113 PRK02090 phosphoadenosine phos 96.7 0.0085 1.8E-07 58.4 9.0 59 112-180 42-102 (241)
114 cd01908 YafJ Glutamine amidotr 96.6 0.0067 1.4E-07 59.7 8.1 60 4-69 180-256 (257)
115 TIGR03442 conserved hypothetic 96.5 0.0075 1.6E-07 59.2 7.7 58 6-72 189-246 (251)
116 PF01507 PAPS_reduct: Phosphoa 96.4 0.012 2.5E-07 53.6 7.8 107 113-234 2-113 (174)
117 PRK08557 hypothetical protein; 96.4 0.052 1.1E-06 57.0 13.3 59 110-178 181-241 (417)
118 COG0301 ThiI Thiamine biosynth 96.2 0.03 6.4E-07 57.8 10.1 109 110-230 175-289 (383)
119 TIGR00289 conserved hypothetic 96.2 0.062 1.3E-06 51.7 11.4 60 112-181 2-68 (222)
120 KOG1706 Argininosuccinate synt 96.1 0.019 4.1E-07 56.7 7.5 121 111-245 6-139 (412)
121 PRK12563 sulfate adenylyltrans 96.0 0.045 9.9E-07 55.1 10.2 107 112-232 39-149 (312)
122 PRK13794 hypothetical protein; 96.0 0.066 1.4E-06 57.4 11.9 61 110-179 247-309 (479)
123 PRK13795 hypothetical protein; 95.9 0.033 7.1E-07 61.9 9.6 61 110-180 243-305 (636)
124 cd01984 AANH_like Adenine nucl 95.8 0.035 7.6E-07 44.6 6.8 34 113-153 1-34 (86)
125 TIGR00434 cysH phosophoadenyly 94.5 0.35 7.7E-06 45.9 10.5 58 111-178 14-73 (212)
126 KOG1622 GMP synthase [Nucleoti 94.4 0.2 4.3E-06 52.1 9.0 71 102-181 223-295 (552)
127 TIGR03183 DNA_S_dndC putative 94.2 0.5 1.1E-05 50.1 11.8 124 109-234 12-152 (447)
128 COG0449 GlmS Glucosamine 6-pho 94.2 0.14 3.1E-06 55.7 7.8 68 1-72 150-218 (597)
129 TIGR02057 PAPS_reductase phosp 93.9 0.79 1.7E-05 44.2 11.8 64 110-182 25-90 (226)
130 PRK06850 hypothetical protein; 93.9 0.88 1.9E-05 49.0 12.9 135 98-234 21-173 (507)
131 PF09147 DUF1933: Domain of un 93.8 0.18 4E-06 46.0 6.4 62 3-67 99-186 (201)
132 COG0175 CysH 3'-phosphoadenosi 93.2 0.89 1.9E-05 44.8 10.9 60 110-179 39-100 (261)
133 COG3969 Predicted phosphoadeno 92.8 0.59 1.3E-05 47.2 8.8 55 109-168 26-82 (407)
134 COG2102 Predicted ATPases of P 92.4 1.4 3.1E-05 42.0 10.6 60 112-181 2-69 (223)
135 PF01902 ATP_bind_4: ATP-bindi 91.4 0.74 1.6E-05 44.2 7.6 58 112-180 2-67 (218)
136 TIGR00290 MJ0570_dom MJ0570-re 91.2 2.3 5E-05 40.9 10.7 57 113-179 3-66 (223)
137 KOG2303 Predicted NAD synthase 89.3 0.34 7.4E-06 51.0 3.5 70 112-181 351-449 (706)
138 PF13230 GATase_4: Glutamine a 68.5 8.9 0.00019 38.0 5.2 65 4-73 170-254 (271)
139 KOG0053 Cystathionine beta-lya 47.1 2E+02 0.0044 30.3 10.9 123 96-237 79-204 (409)
140 TIGR02055 APS_reductase thiore 43.3 56 0.0012 30.4 5.8 50 120-179 2-53 (191)
141 PLN02309 5'-adenylylsulfate re 42.6 1.2E+02 0.0026 32.5 8.7 57 111-178 111-169 (457)
142 PF08057 Ery_res_leader2: Eryt 40.0 16 0.00034 18.8 0.8 14 273-286 1-14 (14)
143 cd01455 vWA_F11C1-5a_type Von 38.6 1.3E+02 0.0029 28.2 7.4 69 97-177 95-172 (191)
144 PF13519 VWA_2: von Willebrand 38.2 1.7E+02 0.0037 25.3 8.0 87 94-189 81-170 (172)
145 KOG0399 Glutamate synthase [Am 35.4 70 0.0015 38.1 5.7 53 16-68 422-477 (2142)
146 COG1856 Uncharacterized homolo 32.9 34 0.00073 33.0 2.4 51 110-169 54-109 (275)
147 TIGR00424 APS_reduc 5'-adenyly 32.8 2.1E+02 0.0046 30.8 8.7 57 111-178 116-174 (463)
148 KOG2840 Uncharacterized conser 30.0 2.2E+02 0.0047 29.1 7.6 65 110-178 51-119 (347)
149 cd01453 vWA_transcription_fact 27.9 3.1E+02 0.0068 25.1 8.1 73 94-177 87-165 (183)
150 PF01053 Cys_Met_Meta_PP: Cys/ 27.3 1.8E+02 0.0038 30.4 6.9 116 96-228 57-179 (386)
151 PRK05613 O-acetylhomoserine am 27.1 2.5E+02 0.0055 29.8 8.2 116 97-228 72-193 (437)
152 COG0626 MetC Cystathionine bet 27.0 3.4E+02 0.0074 28.6 8.9 122 96-236 65-190 (396)
153 PRK08574 cystathionine gamma-s 27.0 2.3E+02 0.005 29.4 7.8 112 99-226 58-173 (385)
154 PF02677 DUF208: Uncharacteriz 26.7 3.7E+02 0.008 24.9 8.0 93 120-226 8-110 (176)
155 TIGR03436 acidobact_VWFA VWFA- 26.5 4E+02 0.0088 26.2 9.2 74 110-194 164-253 (296)
156 COG1066 Sms Predicted ATP-depe 24.3 7.6E+02 0.017 26.3 10.6 119 91-229 78-219 (456)
157 PRK08247 cystathionine gamma-s 24.2 6.6E+02 0.014 25.6 10.5 112 97-226 55-172 (366)
158 TIGR01329 cysta_beta_ly_E cyst 24.0 3.6E+02 0.0079 27.8 8.6 117 97-228 50-169 (378)
159 PRK07582 cystathionine gamma-l 23.4 2.4E+02 0.0051 29.0 7.0 102 113-228 67-170 (366)
160 PRK08776 cystathionine gamma-s 22.4 4.5E+02 0.0098 27.5 9.0 117 98-229 64-184 (405)
161 cd00614 CGS_like CGS_like: Cys 21.5 4.6E+02 0.01 26.7 8.8 115 97-228 43-163 (369)
162 PF00266 Aminotran_5: Aminotra 21.4 6.7E+02 0.014 25.3 9.9 125 93-230 42-179 (371)
163 PRK05967 cystathionine beta-ly 21.4 6.1E+02 0.013 26.5 9.6 101 112-227 80-186 (395)
164 TIGR03301 PhnW-AepZ 2-aminoeth 21.1 8E+02 0.017 24.2 10.6 121 94-227 31-162 (355)
165 PRK05968 hypothetical protein; 20.9 7.7E+02 0.017 25.5 10.3 118 98-230 67-187 (389)
No 1
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-117 Score=871.81 Aligned_cols=424 Identities=68% Similarity=1.148 Sum_probs=402.1
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEeeCCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTW 80 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y~~p~~ 80 (474)
.|+|||||+++|..+++++++||++|++||||+++.++.++||||+|+|...|+.|..+||||+++.+.+++.||++|.|
T Consensus 116 ~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w 195 (543)
T KOG0571|consen 116 MLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEW 195 (543)
T ss_pred HhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhhceeecCCcceeecccccccCCCCchh
Confidence 48999999999999999999999999999999999899999999999999999999999999999999889999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcH
Q 011948 81 YSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL 160 (474)
Q Consensus 81 ~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~ 160 (474)
.....|+.+.+...+|+.|++||++|||+|+|+||+||||||||+||+++++.+++.+. +.+.++++|+||++++||+
T Consensus 196 ~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL 273 (543)
T KOG0571|consen 196 FDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDL 273 (543)
T ss_pred hhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhH
Confidence 88777777777788999999999999999999999999999999999999998865321 2245899999999999999
Q ss_pred HHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchh
Q 011948 161 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (474)
Q Consensus 161 ~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~ 240 (474)
..||+||+++|+.||++.|+.++.+++|+++|+|+|+||+++||+++|||+++|+++++|+||||||||+||+||||.||
T Consensus 274 ~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYf 353 (543)
T KOG0571|consen 274 LAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYF 353 (543)
T ss_pred HHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCchHHHHHHHHhcceEEEEecCCchhhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHHHhhcc
Q 011948 241 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDD 320 (474)
Q Consensus 241 ~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~ 320 (474)
+++|+.++||+|++|+++.||.+||||+||++|+||+|+|+||||++|+++|+||||++|+.....++++||+||+||.+
T Consensus 354 h~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~ 433 (543)
T KOG0571|consen 354 HKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDT 433 (543)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998755578999999999999
Q ss_pred CCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHhCCcccccccc
Q 011948 321 EERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTV 400 (474)
Q Consensus 321 ~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~ 400 (474)
.+.|+||++|+||+|++|++++|++|+++|+++++..++|.+++++...+|+|||.|||+||||+||+++||++.++.+|
T Consensus 434 ~~~pyLP~eilwrqkeqfsdgVgySwid~L~d~~e~~isd~m~a~a~~~fp~ntP~TkEayyYR~iFe~~fp~~~~a~~v 513 (543)
T KOG0571|consen 434 TEKPYLPDEILWRQKEQFSDGVGYSWIDGLKDHAEKQISDAMFANAAAEFPDNTPTTKEAYYYRQIFERFFPQKTAADTV 513 (543)
T ss_pred cCCCcChHHHHHHHHhhhccccchHHHHHHHHHHHHhcCHHHHhChHhhCCCCCCCchhHHHHHHHHHHHCCcchhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997665555
Q ss_pred ccccccccccchhhhchH--hhhcCCCCCchhHHHhhHHHhh
Q 011948 401 PGGASVACSTAKAVEWDA--EWANNLDPSGRAALGVHLSAYE 440 (474)
Q Consensus 401 ~~~~~~~c~~~~~~~w~~--~~~~~~~~~~r~~~~~~~~~~~ 440 (474)
. +|+| +|+++.|||||++. +|.+++.
T Consensus 514 ~-------------~wvp~a~W~~~~Dpsgr~~~-~h~~~~~ 541 (543)
T KOG0571|consen 514 H-------------KWVPKAKWGCAEDPSGRAAL-VHEKAAV 541 (543)
T ss_pred H-------------hhcchhhccCCCCccchhHH-HHHhhhc
Confidence 3 7999 89999999999765 9988874
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.2e-106 Score=868.50 Aligned_cols=453 Identities=85% Similarity=1.413 Sum_probs=409.1
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEeeCCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTW 80 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y~~p~~ 80 (474)
+|+|||||+|||.++++++++|||+|+|||||+++.++.++||||+|+|+..|++|++|||||++.++.+++++||++.|
T Consensus 116 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~ 195 (578)
T PLN02549 116 MLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPW 195 (578)
T ss_pred hCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEeccc
Confidence 58999999999999999999999999999999986567899999999999999999999999999987667889999887
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcH
Q 011948 81 YSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL 160 (474)
Q Consensus 81 ~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~ 160 (474)
.....++.++..++|+++|++||++||++|+|+|++||||||||+|++++++...+......|+.+++|||+|+++++|.
T Consensus 196 ~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~ 275 (578)
T PLN02549 196 FSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEGSPDL 275 (578)
T ss_pred CccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCCCCCCHH
Confidence 54333444567789999999999999999999999999999999999999887543210001224799999999999999
Q ss_pred HHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchh
Q 011948 161 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (474)
Q Consensus 161 ~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~ 240 (474)
.+|++||+++|++||++.++.+++++.++++++++|+++++++++++++|++++.+++.|++|+|||+||||+||||.+|
T Consensus 276 ~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~ 355 (578)
T PLN02549 276 KAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355 (578)
T ss_pred HHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhh
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHHHhhcc
Q 011948 241 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDD 320 (474)
Q Consensus 241 ~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~ 320 (474)
+.+|+..+|+.|++++++.||.++++|+||++|+||||+|+||||++||+++++||+++|+.++.+++++|||||+||++
T Consensus 356 ~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~ 435 (578)
T PLN02549 356 HKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDD 435 (578)
T ss_pred hhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCCHHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhh
Confidence 99988777899999999889999999999999999999999999999999999999999997522235799999999986
Q ss_pred CCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHhCCcccccccc
Q 011948 321 EERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTV 400 (474)
Q Consensus 321 ~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~~~~~ 400 (474)
.+.++||++|+||+|+||++|+|++|++.|+++++++++|++|+++...+|.++|.|||+||||+||++|||++++..+|
T Consensus 436 ~~~~~LP~~Il~R~K~~f~~~~g~~w~~~l~~~~~~~~~d~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~~~~~~~ 515 (578)
T PLN02549 436 EEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFANASFRYPHNTPTTKEAYYYRMIFEKHFPQDAARLTV 515 (578)
T ss_pred cCcccCCHHHhCCCccCCCCCCcchHHHHHHHHHHHHcCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHCCCcchhhhc
Confidence 33448999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhhchHhhhcCCCCCchhHHHhhHHHhhhhhhccCCCCCCcc
Q 011948 401 PGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAYEKQVAASNAVKAPPK 454 (474)
Q Consensus 401 ~~~~~~~c~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (474)
||+++|+|||.++++|+|+|++..|||||++.+||+++|++.. +++.+...++
T Consensus 516 ~~~~~~~~~~~~~~~w~~~~~~~~dps~r~~~~~~~~~~~~~~-~~~~~~~~~~ 568 (578)
T PLN02549 516 PGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHVAAYEEDV-AADGAPAVPK 568 (578)
T ss_pred CCCcccccchhHHHHHHHhhCCCCCcchhhHHHHHHHHhhhhh-cccCCccccc
Confidence 9999999999999999999999999999998899999995433 3344444333
No 3
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-105 Score=863.06 Aligned_cols=441 Identities=62% Similarity=1.071 Sum_probs=401.9
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecC--CeeEEeeCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKS--GGLKRWYNP 78 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~--~~~~~y~~p 78 (474)
+|+|||||+|||.++++++++|||+|+|||||++..+|.++||||+|+|...|++|++|||||++.++. +++++||+|
T Consensus 124 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~ 203 (586)
T PTZ00077 124 HLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNP 203 (586)
T ss_pred hcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCC
Confidence 589999999999999999999999999999998755678999999999999999999999999998864 467899998
Q ss_pred CCccC--CCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccc--cccccCcceeEEeecC
Q 011948 79 TWYSE--AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTK--AARQWGTQLHSFCVGL 154 (474)
Q Consensus 79 ~~~~~--~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~--~~~~~~~~l~tftig~ 154 (474)
.|... ..++.++.+++++++|++||++||++|+|+|++||||||||+|++++++...+.. ..+.+..+++|||+|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~ 283 (586)
T PTZ00077 204 NWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGL 283 (586)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCC
Confidence 87532 2334455678999999999999999999999999999999999999998753210 0011224799999999
Q ss_pred CCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 155 EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 155 ~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
++++|..+|++||+++|++||++.++.+++++.++++++++|+|+.+++++++++|++++.+++.|++|+|||+||||||
T Consensus 284 ~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 284 EGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred CCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred cCCchhhcCCChhHHHHHHHHHHHhhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHH
Q 011948 235 GGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWIL 314 (474)
Q Consensus 235 gGY~~~~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lL 314 (474)
|||.+|+.+|+..+|+.|+.++++++|.+|++|+||++|+||+|+|+||||++||+++++||+++|+.+..+++.+||||
T Consensus 364 gGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iL 443 (586)
T PTZ00077 364 GGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYIL 443 (586)
T ss_pred cCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHHHHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHH
Confidence 99999998887777888888888899999999999999999999999999999999999999999998531235789999
Q ss_pred HHhhccCCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHhCCcc
Q 011948 315 RKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQN 394 (474)
Q Consensus 315 R~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~ 394 (474)
|+||++...++||++|+||+|+||++|+|+.|++.++++++++++|+.++++...+|.++|.|||+||||+||++|||++
T Consensus 444 R~a~~~~~~~~LP~~I~~R~K~~F~~~~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~ 523 (586)
T PTZ00077 444 RKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLKEYAEKKISDQEFSQASFLFPYNTPRTKEAYLYRQIFSKHFPSD 523 (586)
T ss_pred HHHHhccCcCcCCHHHhCCcccCCCCCCchhHHHHHHHHHHHHhChHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHCCch
Confidence 99999633348999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccchhhhchHhhhcCCCCCchhHHHhhHHHhhh
Q 011948 395 SARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAYEK 441 (474)
Q Consensus 395 ~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~ 441 (474)
+++.+|++|+||+|||+++++|+|+|++..|||||++.+||+++|++
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~dps~r~~~~~~~~~~~~ 570 (586)
T PTZ00077 524 SAALTVPYGPSIACSTEKALEWDESFKKNTDESGRAVLSVHNDAKQD 570 (586)
T ss_pred hheeecCCCcccccccHHHHHHHHHhcCCCCcchhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999954
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.2e-102 Score=836.46 Aligned_cols=433 Identities=61% Similarity=1.043 Sum_probs=398.0
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEeeCCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTW 80 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y~~p~~ 80 (474)
+|+|||||+|||.++++++++|||+|+|||||++..++.++||||+|+|+..|++|++|||||++.+.+++.++||++.|
T Consensus 117 ~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 117 DLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred hCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCc
Confidence 58999999999999999999999999999999987448899999999999999999999999999887777889999877
Q ss_pred ccC-CCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccc----cccccCcceeEEeecCC
Q 011948 81 YSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTK----AARQWGTQLHSFCVGLE 155 (474)
Q Consensus 81 ~~~-~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~----~~~~~~~~l~tftig~~ 155 (474)
... ..++.++.+++++++|++||++||++|+|+|++||||||||+||+++++...+.+ ...+|+.+++|||+|++
T Consensus 197 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 197 FDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 432 2234455678999999999999999999999999999999999999988753211 01123347999999999
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 011948 156 GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (474)
Q Consensus 156 ~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfg 235 (474)
+++|..+|++||+++|++||++.++.+++++.++++++++|+++++++++++++|++++.+++.|+||+|||+|||||||
T Consensus 277 ~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFg 356 (554)
T PRK09431 277 GSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFG 356 (554)
T ss_pred CCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhc
Confidence 99999999999999999999999999999999999999999999888999999999999998889999999999999999
Q ss_pred CCchhhcCCChhHHHHHHHHHHHhhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHH
Q 011948 236 GYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILR 315 (474)
Q Consensus 236 GY~~~~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR 315 (474)
||.+|+.+|+...|+.|+++++..+|.++++|+||++|++|+|+|+||||++||+++++||+++|+.++ ++.+|||||
T Consensus 357 GY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~lv~~a~~ip~~~K~~~~--~~~~K~iLR 434 (554)
T PRK09431 357 GYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEARVPFLDKEFLDVAMRINPEDKMCGN--GKMEKHILR 434 (554)
T ss_pred CchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCceeecCcCCHHHHHHHHhCCHHHHhcCC--CCCCHHHHH
Confidence 999999888877788888899999999999999999999999999999999999999999999999852 246899999
Q ss_pred HhhccCCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHhCCccc
Q 011948 316 KAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNS 395 (474)
Q Consensus 316 ~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~ 395 (474)
+||++ +||++|+||+|+||++|++++|++.++++++++++|+.++++...+|.++|.|||+||||+||++|||+++
T Consensus 435 ~a~~~----~LP~~I~~R~K~~f~~~~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~~y~~if~~~fp~~~ 510 (554)
T PRK09431 435 EAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVSDQQLATARFRFPYNTPTTKEAYLYREIFEELFPLPS 510 (554)
T ss_pred HHHhh----hCCHHHhCCCCCCCCCCChhHHHHHHHHHHHHHhCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHCCchh
Confidence 99999 99999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccchhhhchHhhhcCCCCCchhHHHhhHHHh
Q 011948 396 ARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAY 439 (474)
Q Consensus 396 ~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~ 439 (474)
+..|||.+.+|+|++..+.+|+++|++..|||||++.++|+++|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~d~s~r~~~~~~~~~~ 554 (554)
T PRK09431 511 AAECVPGGPSVACSSAKAIEWDEAFKNMDDPSGRAVSGVHQSAY 554 (554)
T ss_pred hhhccCCCCccccccchhhhhhhhcCCCCCcchhhhhccccccC
Confidence 99999999999999998889999999999999999889998764
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=2.1e-70 Score=593.80 Aligned_cols=358 Identities=28% Similarity=0.467 Sum_probs=295.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc----------------------------
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---------------------------- 52 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~---------------------------- 52 (474)
+|+|||||+|||..+++++++|||+|+|||||+.. ++.++||||+|+|+..
T Consensus 118 ~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~ 196 (589)
T TIGR03104 118 RFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTI 196 (589)
T ss_pred HhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCch
Confidence 58999999999999999999999999999999886 7889999999999742
Q ss_pred cCcceEeCCCcEEEec-CC--eeEEeeCCCCccC---CCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHH
Q 011948 53 CEHFEAFPPGHLYSSK-SG--GLKRWYNPTWYSE---AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLV 126 (474)
Q Consensus 53 ~~~I~~lpPG~~l~~~-~~--~~~~y~~p~~~~~---~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~I 126 (474)
+++|++|||||+++++ ++ +..+||++..... ...+.++.+++++++|.+||++|+.+|+|+|++||||||||+|
T Consensus 197 ~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~I 276 (589)
T TIGR03104 197 LKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLI 276 (589)
T ss_pred hhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHH
Confidence 4799999999999885 44 3568999864221 1123345668899999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCcceeEEeecCCCC-----CcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcc
Q 011948 127 ASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVT 201 (474)
Q Consensus 127 aala~~~~~~~~~~~~~~~~l~tftig~~~~-----~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~ 201 (474)
++++++... .+++|||++++++ +|..+|++||+++|++||++.++++++++.++++++++|.|..
T Consensus 277 aa~~~~~~~---------~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~- 346 (589)
T TIGR03104 277 VGLLAEAGV---------DGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV- 346 (589)
T ss_pred HHHHHHhcC---------CCceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC-
Confidence 999887642 4699999999753 7999999999999999999999999999999999999877642
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcC------CCh-----------hHH----HH---------
Q 011948 202 TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------PNK-----------EEF----HR--------- 251 (474)
Q Consensus 202 ~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~------p~~-----------~~~----~~--------- 251 (474)
..+.+++|++++.+++ +++|+|||+||||+||||.+|... |.. ..+ ..
T Consensus 347 -~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (589)
T TIGR03104 347 -SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPLAAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSG 424 (589)
T ss_pred -CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHHHhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhH
Confidence 2345788999998876 699999999999999999766421 100 000 00
Q ss_pred HH-------------HHHHHhhc------chhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchH
Q 011948 252 ET-------------CHKIKALH------QYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKW 312 (474)
Q Consensus 252 e~-------------~~~l~~l~------~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~ 312 (474)
+. +.++..+. ...+.+.||++|++|||+|+||||++||||+++||+++|+.++ +|+
T Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa~svE~R~PFLD~~lve~a~~lP~~~k~~~~-----~K~ 499 (589)
T TIGR03104 425 EFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPELKLADG-----GKG 499 (589)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhhccccccCCccCHHHHHHHHhCCHHHhcCCC-----cCH
Confidence 00 00000000 0124569999999999999999999999999999999999752 699
Q ss_pred HHHHhhccCCCCCCChhhhhcccCCCCCcchhhhHH-HHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHh
Q 011948 313 ILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERF 390 (474)
Q Consensus 313 lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~ 390 (474)
|||+|+++ +||++|++|+|.||+.|.+ .|++ .++++++++++++.+...|++++. .+++++++|
T Consensus 500 iLR~a~~~----~lP~~i~~R~K~gf~~P~~-~w~~~~l~~~~~~~l~~~~~~~~~~~~~~---------~v~~~~~~~ 564 (589)
T TIGR03104 500 VLKEAARG----VIPSEVIDRPKGYFPVPAL-KYLRGPFLEWVRDALTSPAARERGLFQRA---------YVDRLLADP 564 (589)
T ss_pred HHHHHHhh----hCCHHHhCCCCCCCCCcHH-HHhhhHHHHHHHHHhCccchhhcCccCHH---------HHHHHHHHh
Confidence 99999999 9999999999999999997 7886 689999999999888888888863 578889887
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=1.3e-64 Score=554.55 Aligned_cols=365 Identities=26% Similarity=0.468 Sum_probs=293.3
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc---------------------------c
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---------------------------C 53 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~---------------------------~ 53 (474)
+|+|||||++||..+++++++||++|+|||||+...++.++||||+++|+.. +
T Consensus 118 ~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 197 (628)
T TIGR03108 118 RFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIF 197 (628)
T ss_pred HcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchh
Confidence 5899999999999999999999999999999986546789999999998652 4
Q ss_pred CcceEeCCCcEEEecCC----eeEEeeCCCCccCCCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHH
Q 011948 54 EHFEAFPPGHLYSSKSG----GLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 129 (474)
Q Consensus 54 ~~I~~lpPG~~l~~~~~----~~~~y~~p~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaal 129 (474)
++|++|||||++.++.+ +..+||++........+.++.+++++++|.+||+.|+.+|+|+|++||||||||+|+++
T Consensus 198 ~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~ 277 (628)
T TIGR03108 198 KGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVAL 277 (628)
T ss_pred cCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHH
Confidence 79999999999988632 34679987643212223455678999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchH
Q 011948 130 TARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAST 207 (474)
Q Consensus 130 a~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~ 207 (474)
+++... .+++|||+++++ .+|..+|++||+++|++|+++.+++++ ++.++.++++.+.|.. ..+.+
T Consensus 278 ~~~~~~---------~~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~ 345 (628)
T TIGR03108 278 MAGLSD---------TPVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSAL 345 (628)
T ss_pred HHHhcC---------CCCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHH
Confidence 887542 479999999975 379999999999999999999999887 6778888887766542 22457
Q ss_pred HHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcC----------C----------------Ch--------h--H---
Q 011948 208 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA----------P----------------NK--------E--E--- 248 (474)
Q Consensus 208 ~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~----------p----------------~~--------~--~--- 248 (474)
++|++++.+++ |++|+|||+||||+|+||.+|... | .. . .
T Consensus 346 ~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (628)
T TIGR03108 346 PTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVRGILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQA 424 (628)
T ss_pred HHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHhhhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhh
Confidence 88999998765 799999999999999999754310 1 00 0 0
Q ss_pred --------H-H------HHHHHH-----------------H-Hhh-------c------ch--------h-hhhcccccc
Q 011948 249 --------F-H------RETCHK-----------------I-KAL-------H------QY--------D-CLRANKSTS 273 (474)
Q Consensus 249 --------~-~------~e~~~~-----------------l-~~l-------~------~~--------d-~lr~dr~~~ 273 (474)
+ . .+.... + ..+ + .. + +.+.||++|
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sM 504 (628)
T TIGR03108 425 LARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLRRHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASM 504 (628)
T ss_pred hhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHHHHhccccCCCHHHHHHHHHHHHhCccccccccCccch
Confidence 0 0 000000 0 000 0 00 1 234799999
Q ss_pred cCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCcchhhhHH-HHHH
Q 011948 274 AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKA 352 (474)
Q Consensus 274 a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~l~~ 352 (474)
++|||+|+||||++|||||++||+++|+.+ +.+|+|||+||++ +||++|++|+|+||+.|+. .|++ .+++
T Consensus 505 a~svE~R~PFLD~~lve~a~slP~~~k~~~----~~~K~iLR~a~~~----~LP~~I~~R~K~gF~~p~~-~w~~~~l~~ 575 (628)
T TIGR03108 505 AHGLEVRVPLLDHRLVEWAAGLPPDLKLRG----GEGKYLLKKAMRP----YLPDDVLYRPKMGFSVPLA-AWFRGPLRE 575 (628)
T ss_pred hccccccCCCCCHHHHHHHHhCCHHHhcCC----CCchHHHHHHHHh----hCCHHHhCCCCCCCCCCHH-HHhccHHHH
Confidence 999999999999999999999999999976 3589999999999 9999999999999999997 7886 6899
Q ss_pred HHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHhCCcccc
Q 011948 353 HAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSA 396 (474)
Q Consensus 353 ~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~~ 396 (474)
.+++++.++.+...|++++. .++++++++..+...
T Consensus 576 ~~~~~l~~~~~~~~g~~d~~---------~v~~l~~~~~~~~~~ 610 (628)
T TIGR03108 576 RVRTLVLGETLAETGLFDPA---------FIRKLVDQHQSGRRD 610 (628)
T ss_pred HHHHHhChhhhhhcCCcCHH---------HHHHHHHHhhccCcc
Confidence 99999999988888888863 578889888765443
No 7
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-64 Score=539.13 Aligned_cols=406 Identities=35% Similarity=0.546 Sum_probs=322.6
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-----cCcceEeCCCcEEEecCCe-eEE
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-----CEHFEAFPPGHLYSSKSGG-LKR 74 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-----~~~I~~lpPG~~l~~~~~~-~~~ 74 (474)
+|+|||||++||.++++|+++|||+|+|||||+.. ++.++||||+|+|+.+ |++|++|||||+++++.++ +.+
T Consensus 117 ~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~ 195 (542)
T COG0367 117 HLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRR 195 (542)
T ss_pred HhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhhhCCcccccCCeEEcCCCcEEEEcCCCceee
Confidence 58999999999999999999999999999999987 6779999999999999 9999999999999998654 889
Q ss_pred eeCCCCccCCCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC
Q 011948 75 WYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL 154 (474)
Q Consensus 75 y~~p~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~ 154 (474)
||++.+.... .+.++..++++++|++||++|+++|+|+|++||||+|||+||+++++.... ...+|||+|+
T Consensus 196 y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~ 266 (542)
T COG0367 196 YWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGK--------EGKTTFTVGF 266 (542)
T ss_pred eecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHHhccc--------cceeeeEeec
Confidence 9998876543 344566889999999999999999999999999999999999999988642 1223699999
Q ss_pred CCCC--cHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 011948 155 EGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 155 ~~~~--D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDE 232 (474)
+++. |..+|+++|+.||++||++.++++|+.+.++++++++|+|+. +.+++|+|++++.++++|++|+||||||||
T Consensus 267 ~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADE 344 (542)
T COG0367 267 EDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADE 344 (542)
T ss_pred CCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHH
Confidence 9874 999999999999999999999999999999999999999985 567899999999999999999999999999
Q ss_pred hccCC-chhhcCCChhHHHHHHHHHHHhhcchh-hhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccc
Q 011948 233 IFGGY-LYFHKAPNKEEFHRETCHKIKALHQYD-CLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIE 310 (474)
Q Consensus 233 lfgGY-~~~~~~p~~~~~~~e~~~~l~~l~~~d-~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~ 310 (474)
+|||| ++....+....+..+.++....+..++ +.|.|+.+|++++|.|+||+|.+++++++++|+..++.... ....
T Consensus 345 lFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~~-~m~~ 423 (542)
T COG0367 345 LFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLALKIPPEHKLNRDR-SMAK 423 (542)
T ss_pred HhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccCchHHHHHHHHhcCCcccccchhh-hhhh
Confidence 99999 566666666555555443333333333 47799999999999999999999999999999999998631 1246
Q ss_pred hHHHHHhhccCCCCC--CChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCC-----CCCcchhHHhHH
Q 011948 311 KWILRKAFDDEERPY--LPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFP-----HNTPLTKEAYYY 383 (474)
Q Consensus 311 K~lLR~a~~~~~~~~--LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~-----~~~~~~ke~~~~ 383 (474)
|.++|-++.+ . +|++|.||+|..++.+.+..+... +..+.+..+.+...-++ -..+.+++.+.+
T Consensus 424 ~le~Rvpf~~----~~~l~~~i~~~~K~~~~~gk~~lr~~~-----~~~~p~~~~~r~k~~~~~~~~~~~~~~~~~~~~~ 494 (542)
T COG0367 424 KLERRVPFSD----GVELPEEIPWREKIAFGYGKGILRIAY-----EKILPDFILSRKKLGFPKPLWGRYYENSLLLWLY 494 (542)
T ss_pred hhheeccccc----chhhHhhCChhhhhhcCCcchhhHhhh-----hccCcHHHhcccccCCCcccccccccchHHHHHH
Confidence 7788888887 6 999999999999888876544322 22233222222222222 223457889899
Q ss_pred HHHHHHhCCccccccccccccccccccchhhhchHhhhcCCCCCchhHHHhhH
Q 011948 384 RMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHL 436 (474)
Q Consensus 384 ~~~f~~~~~~~~~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~r~~~~~~~ 436 (474)
+.+++++++...-.....+.....| .. -|+ ....++|+|... +|.
T Consensus 495 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~---~~~---~~~~~~~~~~~~-~~~ 539 (542)
T COG0367 495 RLIEEEFSPEYPLVDLALVARLYEK-RL---WLL---IKGLAYSARLKK-LKP 539 (542)
T ss_pred HHHhhhcccccchhhhHHHHHHHhh-cc---chh---hhhhHHHHHHhh-ccc
Confidence 9999998886544444443333332 00 133 456677777544 554
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.5e-63 Score=528.63 Aligned_cols=317 Identities=43% Similarity=0.735 Sum_probs=265.7
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc----------------------------
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---------------------------- 52 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~---------------------------- 52 (474)
+|+|||||+|||.++++++++||++|+|||||+.. ++.++||||+|+|+..
T Consensus 116 ~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~ 194 (467)
T TIGR01536 116 RLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTF 194 (467)
T ss_pred HcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccccCcCCCCHHHHHHHhccCccCCCCcc
Confidence 58999999999999999999999999999999986 7899999999988642
Q ss_pred cCcceEeCCCcEEEecCC--e-eEEeeCCCCccCCCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHH
Q 011948 53 CEHFEAFPPGHLYSSKSG--G-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 129 (474)
Q Consensus 53 ~~~I~~lpPG~~l~~~~~--~-~~~y~~p~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaal 129 (474)
+++|++|||||++.++.+ . .++||.+. .....+.++.+++++++|.+||++|+.+++|+|++||||+|||+|+++
T Consensus 195 ~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~ 272 (467)
T TIGR01536 195 FRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAI 272 (467)
T ss_pred cCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHH
Confidence 479999999999988632 2 34566522 111223455678999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCcceeEEeecCCC---CCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccch
Q 011948 130 TARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAS 206 (474)
Q Consensus 130 a~~~~~~~~~~~~~~~~l~tftig~~~---~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~ 206 (474)
+++...+ .++++||+++++ .+|..+|+++|+++|++|+++.++++++.+.++++++++|.|. ...+.
T Consensus 273 a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~ 342 (467)
T TIGR01536 273 ARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRAS 342 (467)
T ss_pred HHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchH
Confidence 9876521 368999999873 3578899999999999999999999999999999999988553 23456
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcCCChhHHHHHHH-HHHHhhcchhhhhcccccccCCceeecccCC
Q 011948 207 TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETC-HKIKALHQYDCLRANKSTSAWGLEARVPFLD 285 (474)
Q Consensus 207 ~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~-~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD 285 (474)
+++|++++.+++.|++|+|||+||||+||||.++..++....+.++.. ..++.....++++.||++|++|+|+|+||||
T Consensus 343 ~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD 422 (467)
T TIGR01536 343 IPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALREELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLD 422 (467)
T ss_pred HHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHHHHHHHHHHHhCcccchhHHHHHhhccccccCCcCC
Confidence 788999999999999999999999999999998876654333333322 2233333445667799999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCC
Q 011948 286 KDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQF 338 (474)
Q Consensus 286 ~~vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f 338 (474)
++||||+++||+++|+.+ +.+|||||+||++ +||++|++|+|.||
T Consensus 423 ~~lv~~a~~lp~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~R~K~gf 467 (467)
T TIGR01536 423 HELVEYALSIPPEMKLRD----GKEKYLLREAFEG----YLPEEILWRKKEGF 467 (467)
T ss_pred HHHHHHHHhCCHHHhcCC----CCcHHHHHHHHhh----hCCHHHhcCCCCCC
Confidence 999999999999999975 3589999999999 99999999999997
No 9
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=9.8e-43 Score=343.21 Aligned_cols=227 Identities=42% Similarity=0.724 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHhCCc
Q 011948 96 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV 173 (474)
Q Consensus 96 r~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~lg~~ 173 (474)
+++|.+||+.|+.+++|+|++||||+|||+|++++++... .++++||+++. +.+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 4689999999999999999999999999999999988753 34788988775 346799999999999999
Q ss_pred eEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcCCCh-------
Q 011948 174 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 246 (474)
Q Consensus 174 h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~p~~------- 246 (474)
|+++.++.+++.+.++.++++.+.+.. ..+.++++.+++.+++.|++|+|||+||||+|+||..+......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPFA--DSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 999999999988888888887765532 33457789999999999999999999999999999866532110
Q ss_pred -------------hHHHHHHHHHHHhhcch--------------------hhhhcccccccCCceeecccCCHHHHHHHH
Q 011948 247 -------------EEFHRETCHKIKALHQY--------------------DCLRANKSTSAWGLEARVPFLDKDFINVAM 293 (474)
Q Consensus 247 -------------~~~~~e~~~~l~~l~~~--------------------d~lr~dr~~~a~glE~R~PfLD~~vve~a~ 293 (474)
..+...+.+.+..+... -+.+.|+++|++|+|+|+||||++||||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 00111111112221111 134689999999999999999999999999
Q ss_pred cCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCc
Q 011948 294 AIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG 341 (474)
Q Consensus 294 slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~ 341 (474)
+||+++|+.+ +.+|+|||+++++ +||++|++|+|+||..|
T Consensus 230 ~lP~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 230 SLPPELKIRG----GREKYLLREAAAG----LLPDEILWRPKRGFQVP 269 (269)
T ss_pred cCCHHHhcCC----CCchHHHHHHHHh----hCCHHHHcCCCCCCCCC
Confidence 9999999975 4689999999999 99999999999999864
No 10
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=7.2e-41 Score=325.59 Aligned_cols=225 Identities=35% Similarity=0.657 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCC--cHHHHHHHHHHhC
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLG 171 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~--D~~~A~~vA~~lg 171 (474)
+||++|.+||++|+.++.|+|+.||||+|||+|++++++.. +.++++||+++++.+ |..+|++||+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999833 368999999998876 9999999999999
Q ss_pred CceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcC----CChh
Q 011948 172 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA----PNKE 247 (474)
Q Consensus 172 ~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~----p~~~ 247 (474)
++|+++.++.+++.+.++++++.++.|.......+++.+.+++.+++.|++++|||+||||+|+||+.+... ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 999999999999999999999988877642223456777888988889999999999999999999655432 1222
Q ss_pred HHHHHHHHHHHhh------------------------cchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccC
Q 011948 248 EFHRETCHKIKAL------------------------HQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMIN 303 (474)
Q Consensus 248 ~~~~e~~~~l~~l------------------------~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~ 303 (474)
....++.+.+..+ ....+.+.+++++.+|+|+|.||||++||+||++||.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 2222222222211 0112335678899999999999999999999999999999986
Q ss_pred CCCCccchHHHHHhhccCCCCCCChhhhhccc
Q 011948 304 PQEGRIEKWILRKAFDDEERPYLPKHVLYRQK 335 (474)
Q Consensus 304 ~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K 335 (474)
+.+|+|||++|++ +||++|+||+|
T Consensus 232 ----~~~K~llR~a~~~----~lP~~i~~r~K 255 (255)
T PF00733_consen 232 ----GIYKYLLREAMKD----LLPPEILWRKK 255 (255)
T ss_dssp ----TECTHHHHHHHTC----CS-HHHHTS-S
T ss_pred ----CCCcHHHHHHHHh----hCCHHHhcCCC
Confidence 4679999999999 99999999998
No 11
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=7.2e-31 Score=262.56 Aligned_cols=322 Identities=23% Similarity=0.297 Sum_probs=225.4
Q ss_pred cceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEeeC----
Q 011948 2 LDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYN---- 77 (474)
Q Consensus 2 L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y~~---- 77 (474)
+.|.|+|++||.+.++|+..||++|++.|-|...+.+..+..|... ..-+.|++|||+......+.-.-.|.+
T Consensus 114 ~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g---~~~~~i~e~~~~F~~~~~d~~~w~y~s~~le 190 (520)
T KOG0573|consen 114 LQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVG---TSGKLIYEVPPVFRNKLTDRVPWPYLSTKLE 190 (520)
T ss_pred ccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccc---cCCccccccCchhhhccCCccccccccceec
Confidence 6899999999999999999999999999999987555444333211 122467899999443332211111111
Q ss_pred -CCCccCCCCCC-------------CCcHHHHHHHHHHHHHHhhcc---------------CCCEEEecCCcccHHHHHH
Q 011948 78 -PTWYSEAIPST-------------PYDPLVLRQAFENAVIKRLMT---------------DVPFGVLLSGGLDSSLVAS 128 (474)
Q Consensus 78 -p~~~~~~~~~~-------------~~~~~~lr~~L~~AV~~rl~s---------------d~pvgv~LSGGLDSS~Iaa 128 (474)
|.-. ..+.. .+.+..+.+.+.++++.|... ..+|+|++|||+||++||.
T Consensus 191 ~~~~~--s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~ 268 (520)
T KOG0573|consen 191 NSLGP--SLPPLCDISEIFLNQSHRSEVVSGLHTGLRDSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAV 268 (520)
T ss_pred ccCCC--cCCCccchHHHHhhhHHHHHHHhhhHHHHHHHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHH
Confidence 0000 01111 123456777788888876421 3689999999999999999
Q ss_pred HHHHhhcccccccccCcceeEEeecCC---CC-----CcHHHHHHHHHHhCC-------ceEEEEeChhhhHHhHHHHHH
Q 011948 129 ITARHLAGTKAARQWGTQLHSFCVGLE---GS-----PDLKYAKEVADYLGT-------VHHEFHFTVQDGIDAIEEVIY 193 (474)
Q Consensus 129 la~~~~~~~~~~~~~~~~l~tftig~~---~~-----~D~~~A~~vA~~lg~-------~h~~i~~~~~~~~~~l~~~i~ 193 (474)
++....+.. .+|....+.|. +. +|+..+++-++.|.. ...++.++-+++..+.+. |.
T Consensus 269 l~h~~vp~n-------e~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~ 340 (520)
T KOG0573|consen 269 LAHYVVPEN-------EPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IK 340 (520)
T ss_pred HHHhhcCCC-------CceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HH
Confidence 999887653 57777777663 22 799888888887753 345666777776555444 55
Q ss_pred hhccCCcccccch--HHHHHHHH----------HHHhCCCcEEEEcCchhhhccCCchhhcC---CChhHHHHHHHHHHH
Q 011948 194 HVETYDVTTIRAS--TPMFLMSR----------KIKSLGVKMVISGEGSDEIFGGYLYFHKA---PNKEEFHRETCHKIK 258 (474)
Q Consensus 194 ~le~~~~~~i~~~--~~~y~l~~----------~a~~~G~~vvLsG~GgDElfgGY~~~~~~---p~~~~~~~e~~~~l~ 258 (474)
++=.|..+..+-+ .+.|+.++ --+ ...+|+|+|-||||+||||..|+.. +..+.+.+|+.+++.
T Consensus 341 ~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~-s~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~ 419 (520)
T KOG0573|consen 341 HLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYR-SYARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLF 419 (520)
T ss_pred HhhCcCccccccccceEEEEeeccccccccCccccc-cccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHh
Confidence 5533433222222 23455555 222 3479999999999999999887732 334468899999999
Q ss_pred hhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhccc--C
Q 011948 259 ALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQK--E 336 (474)
Q Consensus 259 ~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K--~ 336 (474)
++..+++-|.||....+|.|+|+||||..||+|..++|...|+..+..| -+|.|||++...+ -||... .-|| .
T Consensus 420 rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~~~~k~~l~l~G-G~KlllRe~~~~l---Gl~~~s-~~pKrAm 494 (520)
T KOG0573|consen 420 RISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALPVSVKMMLGLRG-GEKLLLREAGRRL---GLPSAS-TEPKRAM 494 (520)
T ss_pred hhhhcccCccchhhhccCceEeccchHHHHHHHHHhcchhHHhhhcccc-hhhHHHHHHHHHh---CCCccc-ccchHHH
Confidence 9999999999999999999999999999999999999999999876533 6899999999984 356543 3344 3
Q ss_pred CCCCcc
Q 011948 337 QFSDGV 342 (474)
Q Consensus 337 ~f~~~~ 342 (474)
+|+..+
T Consensus 495 QFGSr~ 500 (520)
T KOG0573|consen 495 QFGSRM 500 (520)
T ss_pred Hhhhhh
Confidence 454443
No 12
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.83 E-value=1.4e-20 Score=177.54 Aligned_cols=85 Identities=36% Similarity=0.691 Sum_probs=77.0
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhccc-CcceEeCCCcEEEecCCeeEEeeCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYNPT 79 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~-~~I~~lpPG~~l~~~~~~~~~y~~p~ 79 (474)
+|+|||||+|||.+++++++||||+|++||||++..+|.++||||+|+|...| +.+..|||||++.. .|.+++|++|.
T Consensus 124 ~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~ 202 (224)
T cd01910 124 DLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPM 202 (224)
T ss_pred hcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCC
Confidence 58999999999999999999999999999999987689999999999999999 79999999999876 67789999999
Q ss_pred CccCCCC
Q 011948 80 WYSEAIP 86 (474)
Q Consensus 80 ~~~~~~~ 86 (474)
|....+|
T Consensus 203 ~~~~~vp 209 (224)
T cd01910 203 NKLKAVP 209 (224)
T ss_pred chhhcCC
Confidence 8743344
No 13
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.77 E-value=6e-19 Score=165.51 Aligned_cols=75 Identities=27% Similarity=0.538 Sum_probs=65.2
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc------------------cCcceEeCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD------------------CEHFEAFPPG 62 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~------------------~~~I~~lpPG 62 (474)
+|+|||||+|||++ ++|+++|||+|+|||||... +.++||||+|+|+++ +++|++||||
T Consensus 100 ~L~G~FAfai~D~~-~~L~laRDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG 176 (199)
T cd01909 100 LAEGDFCFFIEDGN-GRLTLATDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPG 176 (199)
T ss_pred HcCEEEEEEEEcCC-CEEEEEECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCC
Confidence 58999999999999 99999999999999999864 789999999999753 5799999999
Q ss_pred cEEEec-C----C--eeEEeeCC
Q 011948 63 HLYSSK-S----G--GLKRWYNP 78 (474)
Q Consensus 63 ~~l~~~-~----~--~~~~y~~p 78 (474)
|++.++ + + ..++||.|
T Consensus 177 ~~l~~~~~g~~~~~~~~~~yW~p 199 (199)
T cd01909 177 TVNVLTFDGGSYGTAESRRTWTP 199 (199)
T ss_pred cEEEEeeCCcccceEEEEEeecC
Confidence 999664 2 1 45789976
No 14
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.62 E-value=8.2e-16 Score=147.62 Aligned_cols=76 Identities=37% Similarity=0.722 Sum_probs=67.6
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc---------------------------c
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---------------------------C 53 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~---------------------------~ 53 (474)
+|+|+|||++||.++++++++|||+|++||||+.. ++.++||||+++|+.. +
T Consensus 116 ~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 194 (220)
T cd00712 116 RLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIF 194 (220)
T ss_pred HhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchh
Confidence 48999999999999999999999999999999986 6789999999999753 4
Q ss_pred CcceEeCCCcEEEecCC--eeEEeeC
Q 011948 54 EHFEAFPPGHLYSSKSG--GLKRWYN 77 (474)
Q Consensus 54 ~~I~~lpPG~~l~~~~~--~~~~y~~ 77 (474)
++|++|||||++.++.+ +.++||+
T Consensus 195 ~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 195 KGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred cCceEECCceEEEEECCCeEEeeeCC
Confidence 69999999999998754 5678984
No 15
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.48 E-value=3.4e-13 Score=121.96 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=87.0
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 189 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~ 189 (474)
.+.++||||+||+++++++.+... .++.++++ ++....+..+++++|+. |++++.+.++..+..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999887642 14544444 55433467899999999 8887777777665443322
Q ss_pred HHH-HhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcCCChhHHH
Q 011948 190 EVI-YHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFH 250 (474)
Q Consensus 190 ~~i-~~le~~~~~~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~p~~~~~~ 250 (474)
..+ ...+.+ ...+. .....+.+.|++.|++++++|+++||+|+||..+...+..++++
T Consensus 73 ~~l~~~~~~p---~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~~~ 132 (154)
T cd01996 73 ARFKAKVGDP---CWPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDERRH 132 (154)
T ss_pred HHHhcccCCC---ChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHHHh
Confidence 211 112222 22222 33456778888999999999999999999999887766555544
No 16
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.44 E-value=1.3e-12 Score=133.44 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=87.1
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcce-eEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQL-HSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 190 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l-~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~ 190 (474)
.+.|.||||+|||.+++++.+..+. .++ .||+.++....+...++++++++|++|+.+.++.+++.+.+..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~gl--------~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~ 132 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLGL--------NPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRA 132 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhCC--------ceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHH
Confidence 4889999999999999888654421 122 5666666533456799999999999999999988776665555
Q ss_pred HHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 191 VIYHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 191 ~i~~le~~~~~~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
.+...+.+. .... .....+.+.|++.|++++++|+++||+||||..
T Consensus 133 ~~~~~~~pc---~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 133 YFKKVGDPE---WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHhccCCCc---hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 555433332 2222 345567888999999999999999999999864
No 17
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.42 E-value=1.9e-13 Score=119.60 Aligned_cols=51 Identities=37% Similarity=0.598 Sum_probs=37.7
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhc
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 51 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~ 51 (474)
+|+|+|||++||+++++++++|||+|+|||||++.+++.++||||+++|++
T Consensus 75 ~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 75 RLDGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp T--EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred hCCceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 589999999999999999999999999999999974369999999999874
No 18
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.20 E-value=2.4e-11 Score=113.19 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=50.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEec-CceEEEecCccchhcccCcceEeCCCc
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-DGSIWISSELKGLNDDCEHFEAFPPGH 63 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~-~g~~~faSeik~L~~~~~~I~~lpPG~ 63 (474)
+|+|+|||++||..+++++++|||+|+|||||+... ++.|+|||+.... ......++||+.
T Consensus 118 ~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~--~~~~~~e~~~~g 179 (181)
T cd03766 118 SIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSS--SGSGFQEVLAGG 179 (181)
T ss_pred hcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCC--CCCceEECCCCc
Confidence 589999999999999999999999999999999864 6889999996432 123567777754
No 19
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.15 E-value=9.2e-11 Score=115.01 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=61.7
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCCee
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL 72 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~~ 72 (474)
+|+|+|+|++||. ++++++||++|++||||+...++.++||||.++|... .+.+++|||||++.++.+..
T Consensus 153 ~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~ 223 (252)
T cd00715 153 RVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGL 223 (252)
T ss_pred hccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCce
Confidence 4799999999997 8899999999999999998643789999999999885 67899999999998875443
No 20
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.14 E-value=3.6e-10 Score=118.64 Aligned_cols=116 Identities=23% Similarity=0.269 Sum_probs=79.8
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEe-eCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRW-YNPT 79 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y-~~p~ 79 (474)
+|+|+|||++.+. ++++++|||+|+|||||+.. + .++||||.++|...++.|+.|+||+++.++.++++.+ +.+.
T Consensus 154 ~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~~~~~~~~ 229 (442)
T PRK08341 154 EVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVESKVLARE 229 (442)
T ss_pred hccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceEEEeeccC
Confidence 5899999999985 78999999999999999973 4 4899999999998888999999999998875433221 1110
Q ss_pred Ccc--------CCCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecCCc
Q 011948 80 WYS--------EAIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLSGG 120 (474)
Q Consensus 80 ~~~--------~~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LSGG 120 (474)
... ...|+ ....+...|..+-+...+... .|.-+++.+||-
T Consensus 230 ~~~~C~fe~iYfarpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~VPdsg~ 283 (442)
T PRK08341 230 KHHHCVFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGR 283 (442)
T ss_pred CCccceEEEEEecCCccccCCcCHHHHHHHHHHHhhcccCCCCceEEEecCchH
Confidence 000 01111 122345566666555555443 345567777776
No 21
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.08 E-value=8.8e-10 Score=116.60 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=81.9
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCCeeEEeeC-C
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWYN-P 78 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~~~~y~~-p 78 (474)
+|+|+|||++.+. ++++++|||+|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+..+.++. +
T Consensus 171 ~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~ 247 (474)
T PRK06388 171 RLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLD 247 (474)
T ss_pred hccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecC
Confidence 5899999999875 78999999999999999986 5679999999999986 4579999999998886544333322 1
Q ss_pred CCccC---------CCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecCC
Q 011948 79 TWYSE---------AIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 119 (474)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LSG 119 (474)
..... ..|+ ....+.+.|..+-+...+... .|.-+.+.+||
T Consensus 248 ~~~~~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 248 GDKVAHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred CCccccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 10000 1121 123455667666666665543 34457888887
No 22
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.07 E-value=1.2e-09 Score=115.84 Aligned_cols=122 Identities=25% Similarity=0.327 Sum_probs=83.5
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecC-CeeEEe--e
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS-GGLKRW--Y 76 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~-~~~~~y--~ 76 (474)
+|+|+|||++++. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+.+.++. +.+..+ .
T Consensus 174 ~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~ 250 (479)
T PRK09123 174 QVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPF 250 (479)
T ss_pred HhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEec
Confidence 4799999999996 68999999999999999986 6789999999999654 56799999999998864 424332 2
Q ss_pred CCCCccC--------CCCC---CCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHH
Q 011948 77 NPTWYSE--------AIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 128 (474)
Q Consensus 77 ~p~~~~~--------~~~~---~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaa 128 (474)
....... ..|+ ....+-++|..+.+...+....+.- .+.+=.||+..+|
T Consensus 251 ~~~~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~D---~Vv~VP~sg~~~A 310 (479)
T PRK09123 251 PPQPARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDAD---VVVPVPDSGVPAA 310 (479)
T ss_pred CCCCCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCCe---EEEEcCccHHHHH
Confidence 2110000 1121 2344668888888877776543221 2333455555544
No 23
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.06 E-value=4e-10 Score=104.98 Aligned_cols=81 Identities=38% Similarity=0.724 Sum_probs=70.5
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccC-cceEeCCCcEEEecCCeeEEeeCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCE-HFEAFPPGHLYSSKSGGLKRWYNPT 79 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~-~I~~lpPG~~l~~~~~~~~~y~~p~ 79 (474)
+|+|.|||||||..++++++|||.-|..||||+.+.||.++||+++..|...|. ..-.||+|+++... +.++.|-+|.
T Consensus 128 ~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~ 206 (228)
T PF12481_consen 128 DLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPK 206 (228)
T ss_pred hccCceEEEEEecCCCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCc
Confidence 489999999999999999999999999999999998899999999999988775 56799999998766 4566776765
Q ss_pred Ccc
Q 011948 80 WYS 82 (474)
Q Consensus 80 ~~~ 82 (474)
...
T Consensus 207 nk~ 209 (228)
T PF12481_consen 207 NKV 209 (228)
T ss_pred ccc
Confidence 543
No 24
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.04 E-value=3.8e-10 Score=119.26 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=78.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCCeeEEee-CC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWY-NP 78 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~~~~y~-~p 78 (474)
+|+|+|||+++|. +.++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+..+.|- .+
T Consensus 163 ~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~ 239 (475)
T PRK07631 163 MLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAP 239 (475)
T ss_pred hCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCC
Confidence 5899999999995 67999999999999999987 6689999999999665 356889999999988654333221 11
Q ss_pred CCccC---------CCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecC
Q 011948 79 TWYSE---------AIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 118 (474)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LS 118 (474)
..... ..|+ ....+.+.|..+-+...+... .|.=+++.+|
T Consensus 240 ~~~~~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s 293 (475)
T PRK07631 240 NQNRSICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEADVVTGVPDS 293 (475)
T ss_pred CCCcccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCCcEEEEechh
Confidence 10000 1121 133456777777666665443 3444455544
No 25
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.04 E-value=8.3e-10 Score=108.25 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=79.7
Q ss_pred HhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC--CcHHHHHHHHHHhCCceEEEEeChh
Q 011948 105 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTVQ 182 (474)
Q Consensus 105 ~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~--~D~~~A~~vA~~lg~~h~~i~~~~~ 182 (474)
..+....++.+++|||+||+++++++.+.. .++.++++..+.. .|...|+++|+++|++|+.+.+++
T Consensus 7 ~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~- 75 (252)
T TIGR00268 7 NFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK- 75 (252)
T ss_pred HHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH-
Confidence 344445679999999999999999998752 4688888865432 478999999999999999988743
Q ss_pred hhHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhhccCC
Q 011948 183 DGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIFGGY 237 (474)
Q Consensus 183 ~~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDElfgGY 237 (474)
+.+ .+... ..+ .+..+...+| .+.+.|++.|++++++|+.+|+++.++
T Consensus 76 -~~~---~~~~n--~~~-~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r 124 (252)
T TIGR00268 76 -MIN---PFRAN--VEE-RCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR 124 (252)
T ss_pred -HHH---HHHhC--CCc-ccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc
Confidence 211 11111 111 1111112223 466778889999999999999997643
No 26
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.04 E-value=3.8e-10 Score=120.11 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=83.0
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCC--eeEEeeC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG--GLKRWYN 77 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~--~~~~y~~ 77 (474)
+|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+ +..+||.
T Consensus 183 ~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~ 259 (510)
T PRK07847 183 TVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAE 259 (510)
T ss_pred HhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccC
Confidence 4799999999995 68999999999999999986 6679999999999876 688999999999988654 3444554
Q ss_pred CCCcc----C---CCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecCC
Q 011948 78 PTWYS----E---AIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 119 (474)
Q Consensus 78 p~~~~----~---~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LSG 119 (474)
+.... . ..|+ ....+.+.|..+-+...+... .|.=+++.+||
T Consensus 260 ~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 260 PTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred CCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 32110 0 1121 233456777777666665543 23334566664
No 27
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.03 E-value=5.2e-10 Score=117.95 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=57.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEec
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSK 68 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~ 68 (474)
+|+|+|||+++|. ++++++||++|+|||||+...++.++||||.++|... .+.++.++||+++.++
T Consensus 153 ~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~ 219 (445)
T PRK08525 153 KIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFE 219 (445)
T ss_pred hcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEE
Confidence 5899999999995 6899999999999999987535689999999999544 4678899999999886
No 28
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.02 E-value=3.2e-09 Score=112.52 Aligned_cols=69 Identities=26% Similarity=0.408 Sum_probs=59.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCCe
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 71 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~ 71 (474)
+|+|+|||++.+. ++++++|||+|+|||||+...++.++||||.++|... .+.|+.|+||+.+.++.+.
T Consensus 164 ~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g 233 (484)
T PRK07272 164 TVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEG 233 (484)
T ss_pred HccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCc
Confidence 4899999999985 6899999999999999987545679999999999765 3678999999999887543
No 29
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.01 E-value=4.6e-09 Score=102.73 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHH
Q 011948 92 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 169 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~ 169 (474)
.+.+...|++.|++. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|++
T Consensus 7 ~~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~ 76 (248)
T cd00553 7 INALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEA 76 (248)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 345555566666543 2346899999999999999999887631 368888887653 3588999999999
Q ss_pred hCCceEEEEeChhhhHHhHHHHHHhh--ccCCccc---ccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 170 LGTVHHEFHFTVQDGIDAIEEVIYHV--ETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 170 lg~~h~~i~~~~~~~~~~l~~~i~~l--e~~~~~~---i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
+|++|+++.+++ ..+.+...+... +.++... +.+-+-+..+...|.+.|..|+-||+ .+|++.||.
T Consensus 77 lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 77 LGIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred hCCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 999999887643 233322222211 1111100 11112234456677788888888998 678888874
No 30
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.00 E-value=5.8e-10 Score=106.79 Aligned_cols=62 Identities=21% Similarity=0.445 Sum_probs=56.4
Q ss_pred CcceEEEEEEEECCCC-EEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEE
Q 011948 1 MLDGMFSFVLLDTRDN-SFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 66 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~-~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~ 66 (474)
+|+|+|||++||..++ +++++|| +|||||+.. ++.++||||+++|...+..|..|.+|.++.
T Consensus 152 ~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 152 RLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred HhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 4899999999998764 9999999 599999986 678999999999999999999999998864
No 31
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.98 E-value=1.7e-09 Score=105.86 Aligned_cols=135 Identities=20% Similarity=0.202 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC---CCCcHHHHHHH
Q 011948 90 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEV 166 (474)
Q Consensus 90 ~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~---~~~D~~~A~~v 166 (474)
...+++.+.|+++|+++..++ +.+.||||+||+++++++.+... ..+.++.+... ...|...|+++
T Consensus 4 ~~~~~l~~~l~~~v~~~~~~~--V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~ 72 (250)
T TIGR00552 4 KYVEEIEDFLRGYVQKSGAKG--VVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALAL 72 (250)
T ss_pred hHHHHHHHHHHHHHHHhCCCC--EEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHH
Confidence 346789999999999987655 45569999999999999887652 23444443221 12488999999
Q ss_pred HHHhCCceEEEEeChhhhHHhHHHHHHhh-ccCCc---ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 167 ADYLGTVHHEFHFTVQDGIDAIEEVIYHV-ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 167 A~~lg~~h~~i~~~~~~~~~~l~~~i~~l-e~~~~---~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
|+.+|++|+++.+++.. ..+....... +..+. ..+.+-+-+..+...|.+.|+.++-||+.. |.+.||.
T Consensus 73 a~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~ 145 (250)
T TIGR00552 73 AEPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYF 145 (250)
T ss_pred HHHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCe
Confidence 99999999998765432 2111100000 00000 001112345667788888999999999986 5677773
No 32
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.98 E-value=4.1e-09 Score=106.35 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=67.0
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC----CCcHHHHHH
Q 011948 90 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----SPDLKYAKE 165 (474)
Q Consensus 90 ~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~----~~D~~~A~~ 165 (474)
+..+++++.|+++|++|+.++ ++++.||||+|||++++++.+... ..++|++.++. .+|..+|++
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g----------~~~v~av~~~~~~s~~~e~~~A~~ 82 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALG----------KERVYGLLMPERDSSPESLRLGRE 82 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhC----------CCcEEEEEecCCCCChHHHHHHHH
Confidence 456789999999999998887 899999999999999999987652 22455555542 358899999
Q ss_pred HHHHhCCceEEEEeCh
Q 011948 166 VADYLGTVHHEFHFTV 181 (474)
Q Consensus 166 vA~~lg~~h~~i~~~~ 181 (474)
+|+++|++|+.+.+++
T Consensus 83 lA~~LGi~~~~i~i~~ 98 (326)
T PRK00876 83 VAEHLGVEYVVEDITP 98 (326)
T ss_pred HHHHcCCCEEEEECch
Confidence 9999999999998875
No 33
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=98.97 E-value=9e-10 Score=104.93 Aligned_cols=65 Identities=38% Similarity=0.610 Sum_probs=58.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhccc-CcceEeCCCcEE
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLY 65 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~-~~I~~lpPG~~l 65 (474)
+++|.|+|+++|..+++++++||++|.+||||....++.++||||.+++.... +.+.++|||+++
T Consensus 155 ~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 155 RLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 37899999999998899999999999999999986357899999999998765 789999999863
No 34
>PLN02440 amidophosphoribosyltransferase
Probab=98.96 E-value=1.3e-09 Score=115.91 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=59.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG 70 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~ 70 (474)
+|+|+|||++||. ++++++|||+|+|||||+...++.++||||.++|... .+.|+.|+||+.+.++.+
T Consensus 153 ~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~ 221 (479)
T PLN02440 153 KLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKD 221 (479)
T ss_pred HhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECC
Confidence 4799999999995 5699999999999999987545679999999999875 678999999999988643
No 35
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=98.95 E-value=1.2e-09 Score=106.99 Aligned_cols=63 Identities=25% Similarity=0.312 Sum_probs=56.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc----cCcceEeCCCcEEE
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD----CEHFEAFPPGHLYS 66 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~----~~~I~~lpPG~~l~ 66 (474)
+|+|+|||+++|. +.++++|||+|+|||||+.. ++.++||||.++|... .+.+..++||+++.
T Consensus 182 ~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 182 DLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred cCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 5899999999986 56999999999999999987 6789999999999877 57899999999864
No 36
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.94 E-value=2.2e-09 Score=113.59 Aligned_cols=123 Identities=24% Similarity=0.326 Sum_probs=83.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCCeeE--EeeC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLK--RWYN 77 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~~~--~y~~ 77 (474)
+|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+.++ ++..
T Consensus 163 ~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~ 239 (471)
T PRK06781 163 KVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTN 239 (471)
T ss_pred hCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCc
Confidence 5899999999995 78999999999999999986 6679999999999754 456889999999988654332 2222
Q ss_pred CCCcc-----C---CCCC---CCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHH
Q 011948 78 PTWYS-----E---AIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 129 (474)
Q Consensus 78 p~~~~-----~---~~~~---~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaal 129 (474)
+.... . ..|+ ....+.+.|..+-+...+....+.. .+.|=-||+..+|.
T Consensus 240 ~~~~~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D---~vv~VP~s~~~~A~ 299 (471)
T PRK06781 240 EVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEAD---VVTGVPDSSISAAI 299 (471)
T ss_pred CcccccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCCc---EEEEcChhHHHHHH
Confidence 11100 0 1121 1234567777777766665543322 23344567776653
No 37
>PRK14561 hypothetical protein; Provisional
Probab=98.94 E-value=6.7e-09 Score=97.85 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=76.2
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 191 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~ 191 (474)
.++++||||+||+++++++.+.. ...+.+|+.++ .+|..+|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~---------~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY---------DVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC---------CeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999886541 12355666665 358999999999999999999988754 5556666
Q ss_pred HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 192 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 192 i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
.+..+.|.... +.+..+++...+ .|+.++.+|.-.|.+
T Consensus 70 ~~~~~~P~~~~--~~l~~~~l~~~a--~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNAI--QYVHEHALEALA--EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCchh--HHHHHHHHHHHH--cCCCEEEEEecCCCc
Confidence 66665543211 123334454433 789999999999884
No 38
>PRK13980 NAD synthetase; Provisional
Probab=98.93 E-value=7.4e-09 Score=102.28 Aligned_cols=133 Identities=24% Similarity=0.249 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHh
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 170 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~l 170 (474)
+.+...|++.|++.- ...+.+.||||+||+++++++.+..+. .++.++++.... ..|...|+++|+++
T Consensus 15 ~~l~~~l~~~v~~~g--~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKAG--AKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHcC--CCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 455666666665532 246889999999999999999886531 368888886543 34889999999999
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
|++|+++.+++ +.+.+...+...+......+.+.+-+..+...|.+.|..|+-||+..+ ++.||.
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE-~~~G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSE-LLLGYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhH-HHhCCc
Confidence 99999987653 223222211100001000111223344566778888988888998865 455653
No 39
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.93 E-value=2.2e-09 Score=114.11 Aligned_cols=116 Identities=27% Similarity=0.293 Sum_probs=79.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEec---CceEEEecCccchhcc-cCcceEeCCCcEEEecCCeeEEe-
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW- 75 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~---~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~~~~y- 75 (474)
+|+|+|||++.+. ++++++|||+|+|||||+... ++.++||||.++|... ++.|+.|+||+++.++.+.++.+
T Consensus 188 ~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~ 265 (500)
T PRK07349 188 RCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFH 265 (500)
T ss_pred HhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEe
Confidence 4899999999875 689999999999999999742 3579999999999655 56799999999998865433322
Q ss_pred eCCCCccC---------CCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecC
Q 011948 76 YNPTWYSE---------AIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 118 (474)
Q Consensus 76 ~~p~~~~~---------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LS 118 (474)
+.+..... ..|+ +...+.+.|..+-+...+... .|.=+++..|
T Consensus 266 ~~~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 266 WAQEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cccCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 21111000 1121 233466777777766665543 3555666666
No 40
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.88 E-value=4.2e-09 Score=111.09 Aligned_cols=116 Identities=23% Similarity=0.319 Sum_probs=79.6
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhc-ccCcceEeCCCcEEEecCCeeEEe-eCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND-DCEHFEAFPPGHLYSSKSGGLKRW-YNP 78 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~-~~~~I~~lpPG~~l~~~~~~~~~y-~~p 78 (474)
+|+|+|+|+++|. ++++++|||+|+|||||+.. ++.++||||.++|.. ..+.++.|+||+.+.++.+.++.+ +.+
T Consensus 154 ~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~ 230 (442)
T TIGR01134 154 RVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFAN 230 (442)
T ss_pred HhCccceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccC
Confidence 4799999999974 68999999999999999986 678999999999975 357899999999998875543321 211
Q ss_pred CCccC--------CCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecCC
Q 011948 79 TWYSE--------AIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 119 (474)
Q Consensus 79 ~~~~~--------~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LSG 119 (474)
..... ..|+ ....+-+.|..+-+...+... .|.=+++..||
T Consensus 231 ~~~~~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~sg 284 (442)
T TIGR01134 231 TPRAPCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSG 284 (442)
T ss_pred CCCcceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCCH
Confidence 10000 1121 123345667666666665543 34445666664
No 41
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.87 E-value=2.5e-08 Score=95.26 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=79.8
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCC--cHHHHHHHHHHhCCceEEEEeChhhhHHh
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDA 187 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~--D~~~A~~vA~~lg~~h~~i~~~~~~~~~~ 187 (474)
-..+.+++|||.|||+++.+|.+.++ .++.++|+..+-.+ +.+-|+..|+.+|+.|..+.++..+
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG---------~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~---- 83 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALG---------DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD---- 83 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhc---------cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc----
Confidence 34789999999999999999988773 57899998876543 7889999999999999999865432
Q ss_pred HHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhhccC
Q 011948 188 IEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIFGG 236 (474)
Q Consensus 188 l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDElfgG 236 (474)
++..+. +...+.-+--..| .+-+.|.+.|..+|++|-.+|++|++
T Consensus 84 -~~~~~n---~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~ 129 (269)
T COG1606 84 -PEFKEN---PENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDY 129 (269)
T ss_pred -hhhccC---CCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCC
Confidence 222221 2111111111112 35567888899999999999999973
No 42
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.86 E-value=1.4e-08 Score=96.06 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=75.3
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHH
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 190 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~ 190 (474)
+.+++|||+||++++.++.+... .++.++++.... ..|.+.++++|+++|++|+.+.++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---------~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---------DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---------CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 46899999999999999987642 267788875432 358899999999999999999876321 1111
Q ss_pred HHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhccCC
Q 011948 191 VIYHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (474)
Q Consensus 191 ~i~~le~~~~~~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY 237 (474)
.. ... .+...+. ..+-.+.+.+++.|+.++++|+.+|+.+.++
T Consensus 69 --~~-~~~-~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~ 112 (202)
T cd01990 69 --AK-NPP-DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR 112 (202)
T ss_pred --hc-CCC-CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC
Confidence 11 111 1111111 2223456778889999999999999998764
No 43
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.86 E-value=4.7e-09 Score=115.44 Aligned_cols=68 Identities=21% Similarity=0.458 Sum_probs=60.8
Q ss_pred CcceEEEEEEEECCC-CEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCee
Q 011948 1 MLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 72 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~-~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~ 72 (474)
+|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||+++|......+..|+||+++.++.+.+
T Consensus 153 ~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~ 221 (604)
T PRK00331 153 RLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGV 221 (604)
T ss_pred hccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 589999999999886 899999996 99999986 678999999999999999999999999998864443
No 44
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.85 E-value=4.7e-09 Score=111.42 Aligned_cols=68 Identities=26% Similarity=0.424 Sum_probs=59.1
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCCe
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 71 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~~ 71 (474)
+|+|+|+|++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.+.
T Consensus 168 ~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g 236 (469)
T PRK05793 168 AIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDG 236 (469)
T ss_pred HhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCc
Confidence 4789999999985 68999999999999999987 6779999999999764 3678899999999886543
No 45
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.84 E-value=4.5e-09 Score=112.51 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=57.3
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEec---CceEEEecCccchhcc-cCcceEeCCCcEEEecC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS 69 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~---~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~ 69 (474)
+|+|+|||+++.. .++++++|||+|+|||||+... ++.++||||.++|... .+.|+.|+||+.+.++.
T Consensus 162 ~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~ 233 (501)
T PRK09246 162 RVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITE 233 (501)
T ss_pred hcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEEC
Confidence 4789999998843 4569999999999999999752 3479999999999875 46789999999998864
No 46
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=98.79 E-value=9.6e-09 Score=113.05 Aligned_cols=68 Identities=21% Similarity=0.443 Sum_probs=59.8
Q ss_pred CcceEEEEEEEECCC-CEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCee
Q 011948 1 MLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 72 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~-~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~ 72 (474)
+|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++.
T Consensus 152 ~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~ 220 (607)
T TIGR01135 152 QLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGV 220 (607)
T ss_pred HhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCee
Confidence 489999999999876 469999995 99999986 678999999999999989999999999988864443
No 47
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.74 E-value=6.6e-08 Score=99.08 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=78.7
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC------------CCcHHHHHHHHHHhCCceEEEEe
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------------SPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~------------~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
+|++++|||+||++++.++.+.. ..+.++++.... ..|...|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999987653 468888876521 24688999999999999999988
Q ss_pred ChhhhHHhHHHHHHhh---ccCCcccccchH-H-HHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 180 TVQDGIDAIEEVIYHV---ETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 180 ~~~~~~~~l~~~i~~l---e~~~~~~i~~~~-~-~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
..+...+.++.++... .+++ +++.+.. . ...+.+.|++.|+..+.||+-+|-..
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpn-pc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPN-PCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-cChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 6543333333333221 2333 2333332 2 23566788889999999999998754
No 48
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.73 E-value=1e-07 Score=88.40 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=75.6
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CC--CCcHHHHHHHHHHhCCceEEEEeChhhhHHh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 187 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~--~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~ 187 (474)
++.+.+|||.||++++.++.+...... .+.++.++++.. .. ..+..+++++|+.+|++++.+.++.+ + ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-ch
Confidence 378999999999999999987643110 012677777653 32 24678999999999999999887632 1 00
Q ss_pred HHHHHHhhccCCcccccc-hHHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 011948 188 IEEVIYHVETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (474)
Q Consensus 188 l~~~i~~le~~~~~~i~~-~~~~y~l~~~a~~~G~~vvLsG~GgDElfg 235 (474)
... ............+ ..-++.+.+.+++.|++++++|+.+|++..
T Consensus 75 ~~~--~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIE--VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhh--hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 000 0001111111111 234556778888999999999999999854
No 49
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.71 E-value=1.2e-07 Score=97.44 Aligned_cols=112 Identities=23% Similarity=0.205 Sum_probs=76.4
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC----------CCCcHHHHHHHHHHhCCceEEEEeCh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE----------GSPDLKYAKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~----------~~~D~~~A~~vA~~lg~~h~~i~~~~ 181 (474)
++++++|||+||++++.++.+.. .++.++++... ...|.+.|+++|+.+|++|+.+.++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 37899999999999999998753 35666665321 12578999999999999999999876
Q ss_pred hhhHHhHHHHHHhh---ccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 182 QDGIDAIEEVIYHV---ETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 182 ~~~~~~l~~~i~~l---e~~~~~~i~~~~~--~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
+...+.+...+... .++++ ++.+... ...+.+.|.+.|+..+.||+-+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnp-c~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNP-DILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc-hHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 54433333333321 22332 2222221 22455778889999999999998754
No 50
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.65 E-value=2.1e-07 Score=96.11 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCC-ceEEEEeChhhhHHh
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA 187 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~-~h~~i~~~~~~~~~~ 187 (474)
.++.+++|||+|||+++.++.+.. ..+.++++.... ..|...|+++|+.+|+ +|+.+.+..+...+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G----------~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~v 72 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERG----------YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGF 72 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcC----------CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHH
Confidence 478999999999999999987642 478888876543 4689999999999998 598888765543334
Q ss_pred HHHHHHh-----hccCCcccccchHHHHHHHHHHHhCCCcEEEEcCc
Q 011948 188 IEEVIYH-----VETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (474)
Q Consensus 188 l~~~i~~-----le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~G 229 (474)
+..++.. -.+|..++.|. +-.-.+.+.|++.|+..+.+|--
T Consensus 73 i~p~i~aNa~y~G~yPl~~~nR~-~~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 73 VKPLVWAGEGYQGQYPLLVSDRY-LIVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHhcchhhcCCCCCccccHH-HHHHHHHHHHHHCCCCEEEecCc
Confidence 4433321 12344333222 22224667788899999999993
No 51
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.7e-07 Score=94.64 Aligned_cols=110 Identities=25% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CC-C------CCcHHHHHHHHHHhCCceEEEEeC
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LE-G------SPDLKYAKEVADYLGTVHHEFHFT 180 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~-~------~~D~~~A~~vA~~lg~~h~~i~~~ 180 (474)
...+.+++|||+|||+.|.++.++. ..+..+++. .. + ..|...|++||+.||++|+.+.+.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 4568999999999999999999875 466665542 21 1 147889999999999999999886
Q ss_pred hhhhHHhHHHHHH---hhccCCcccccc-hHHHH-HHHHHHHhCCCcEEEEcCch
Q 011948 181 VQDGIDAIEEVIY---HVETYDVTTIRA-STPMF-LMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 181 ~~~~~~~l~~~i~---~le~~~~~~i~~-~~~~y-~l~~~a~~~G~~vvLsG~Gg 230 (474)
.+-.-..+...+. .-++|++ ++.+ -..+| .+.+.|.+.|+..+.||+-+
T Consensus 73 ~~y~~~V~~~f~~~Y~~G~TPNP-ci~CN~~iKF~~~l~~a~~lgad~iATGHYa 126 (356)
T COG0482 73 KEFWNKVFEYFLAEYKAGKTPNP-CILCNKEIKFKALLDYAKELGADYIATGHYA 126 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCc-chhcCHHHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 5432111222221 1245543 4554 23333 45677888999999999865
No 52
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.63 E-value=5.5e-07 Score=85.78 Aligned_cols=156 Identities=19% Similarity=0.292 Sum_probs=79.8
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCC-ceEEEEeC-hhhhH-Hh
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGT-VHHEFHFT-VQDGI-DA 187 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~-~h~~i~~~-~~~~~-~~ 187 (474)
..++||||+||++.++.+.+.. ..+.++++ |.....|+++|+++++++|+ +|+.+.++ ..++. ..
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 4689999999999999888765 35665554 55545699999999999999 99999887 22211 11
Q ss_pred HH-HH--HHh----hccCCccc--ccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcCCChhHHHHHHHHHHH
Q 011948 188 IE-EV--IYH----VETYDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIK 258 (474)
Q Consensus 188 l~-~~--i~~----le~~~~~~--i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~ 258 (474)
+. +- +.. -+....+. .|+.+.+-+.+-.|.+.|+..++.|--+++ +.||+-.. .+|.+.+.+.+.
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~~~~~~~~~ 145 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFIDAMNRLLN 145 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHHHHHHHHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHHHHHHHHHH
Confidence 11 10 111 01111111 233332223344566779999999987766 56776322 234333222111
Q ss_pred hhcchhhhhcccccccCCceeecccCCH---HHHHHHHcCC
Q 011948 259 ALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 296 (474)
Q Consensus 259 ~l~~~d~lr~dr~~~a~glE~R~PfLD~---~vve~a~slP 296 (474)
. .....+.+..||++. +++..+..+.
T Consensus 146 ~------------~~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 146 L------------GEGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp H------------HHTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred h------------cCCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 1 123568899999985 5666666554
No 53
>PTZ00323 NAD+ synthase; Provisional
Probab=98.63 E-value=5.4e-07 Score=89.89 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC-CCCcHHHHHHHHHHhCCc
Q 011948 97 QAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDLKYAKEVADYLGTV 173 (474)
Q Consensus 97 ~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~-~~~D~~~A~~vA~~lg~~ 173 (474)
+...+.++.++.. ...+.+.||||+||+++++++.+..+..+. ....+.++..... ...+...|+++|+.+|++
T Consensus 31 ~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~ 107 (294)
T PTZ00323 31 EKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQACGAT 107 (294)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHhCCc
Confidence 3333445554443 567899999999999999999987643110 0012333333322 224789999999999999
Q ss_pred eEEEEeChhhhHHhHHHHHHhhccCCc---------ccccchHHHHHHHHHHHhCCCcEEEEcC-chhhh-ccCCch
Q 011948 174 HHEFHFTVQDGIDAIEEVIYHVETYDV---------TTIRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 239 (474)
Q Consensus 174 h~~i~~~~~~~~~~l~~~i~~le~~~~---------~~i~~~~~~y~l~~~a~~~G~~vvLsG~-GgDEl-fgGY~~ 239 (474)
|+++.+++ ..+.+...+......+. ..+|. ...|.+++.+.+.|...++.|- -.||. .-||..
T Consensus 108 ~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~-~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 108 EVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRT-PVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred EEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHh-HHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 99998774 33333333322110110 01222 2357787777777888777777 56775 347743
No 54
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.63 E-value=2.8e-07 Score=88.93 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=86.8
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHhCCc-eEEEEeChhhhH--H
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV-HHEFHFTVQDGI--D 186 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~lg~~-h~~i~~~~~~~~--~ 186 (474)
++.+++|||+||+++++++.+.. .++.++++.+. ...|++.|+++|+++|++ |+++.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 57899999999999999886542 35667766543 345899999999999996 988876632110 0
Q ss_pred hHHHH---HH--hh--ccCCcccc--cchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcCCChhHHHHHHHHHH
Q 011948 187 AIEEV---IY--HV--ETYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 257 (474)
Q Consensus 187 ~l~~~---i~--~l--e~~~~~~i--~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l 257 (474)
.|.+- +. .. +....+.+ |+.+..-+....|.+.|++.++.|--+|.. +||+- .+.+|.+.+-+.+
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpD-----cr~~Fi~A~~~~~ 146 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPD-----CRDEFVKALNHAV 146 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCC-----CCHHHHHHHHHHH
Confidence 11100 00 00 00111111 222211122235677899999999999885 67752 3344543322211
Q ss_pred HhhcchhhhhcccccccCCceeecccCC
Q 011948 258 KALHQYDCLRANKSTSAWGLEARVPFLD 285 (474)
Q Consensus 258 ~~l~~~d~lr~dr~~~a~glE~R~PfLD 285 (474)
+ .++..++.+..||++
T Consensus 147 ~------------~~~~~~i~I~aPl~~ 162 (231)
T PRK11106 147 S------------LGMAKDIRFETPLMW 162 (231)
T ss_pred H------------hccCCCcEEEecCCC
Confidence 1 123345899999998
No 55
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.62 E-value=6.1e-08 Score=107.23 Aligned_cols=72 Identities=24% Similarity=0.486 Sum_probs=62.6
Q ss_pred CcceEEEEEEEECC-CCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEee
Q 011948 1 MLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 76 (474)
Q Consensus 1 ~L~G~FAf~i~D~~-~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y~ 76 (474)
+|+|+|||++||.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.+.++.|.
T Consensus 183 ~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 183 RLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 48999999999976 5899999997 99999986 5679999999999998888889999999988766665543
No 56
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.61 E-value=1.9e-07 Score=95.83 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=74.3
Q ss_pred ccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC---C-CcHHHHHHHHHHhCCceEEEEeChhh
Q 011948 108 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEFHFTVQD 183 (474)
Q Consensus 108 ~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~---~-~D~~~A~~vA~~lg~~h~~i~~~~~~ 183 (474)
..+..+.+++|||+||++++.++.+.. .++.++++...+ + .|...|+++|+++|++|+.+.++.+-
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f 72 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVF 72 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHH
Confidence 345679999999999999999998753 467887775422 2 35889999999999999988765321
Q ss_pred hHHhHHHHHHh---hccCCcccccchH-HHH-HHHHHHHhCCCcEEEEcCchh
Q 011948 184 GIDAIEEVIYH---VETYDVTTIRAST-PMF-LMSRKIKSLGVKMVISGEGSD 231 (474)
Q Consensus 184 ~~~~l~~~i~~---le~~~~~~i~~~~-~~y-~l~~~a~~~G~~vvLsG~GgD 231 (474)
..+.++.++.. -.+++ +++.+.. ..| .+.+.|.+.|++.+.||+-+.
T Consensus 73 ~~~v~~~f~~~y~~g~tpn-pC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 73 RKQIIDYFIDEYMSGHTPV-PCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHhhhhhHHhccCCCC-HHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 11111111111 12232 1222222 122 456778889999999999884
No 57
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.56 E-value=1.4e-07 Score=96.45 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=67.4
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC-----------CcHHHHHHHHHHhCCceEEEEeC
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----------PDLKYAKEVADYLGTVHHEFHFT 180 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~-----------~D~~~A~~vA~~lg~~h~~i~~~ 180 (474)
.|.|.+|||+|||+-|+++.++. .++..+++.+.+. .|...|++||++||++|+.+.+.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 47899999999999999998865 5787777654332 25788999999999999999986
Q ss_pred hhhhHHhHHHHHH---hhccCCcccccchHH--HHHHHHHHHh-CCCcEEEEcCchhhhcc
Q 011948 181 VQDGIDAIEEVIY---HVETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEIFG 235 (474)
Q Consensus 181 ~~~~~~~l~~~i~---~le~~~~~~i~~~~~--~y~l~~~a~~-~G~~vvLsG~GgDElfg 235 (474)
.+-.-+.++.++. .-.||++ ++.+.-- .-.+.+.|.+ .|+..+-||+-|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNP-cv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNP-CVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----H-HHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCh-HHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 5432233333332 1245553 3332211 1146677888 89999999998865544
No 58
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=88.93 Aligned_cols=117 Identities=28% Similarity=0.376 Sum_probs=75.2
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEe--ecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhH--Hh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI--DA 187 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tft--ig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~--~~ 187 (474)
...+.||||+||+++++.+.+.. ..+++.| +|.+...|++.|+++|+.||++||++.++.-.-+ ..
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~sa 73 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSA 73 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCc
Confidence 35689999999999999998865 3566555 5656667999999999999999998876532201 01
Q ss_pred HH-H---HHHh---hccCCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 188 IE-E---VIYH---VETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 188 l~-~---~i~~---le~~~~~--~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
|. + +... -++...+ ..|+.+.+.+.+-.|...|++-++.|--+.+ |.||+-
T Consensus 74 Ltd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPD 133 (222)
T COG0603 74 LTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPD 133 (222)
T ss_pred CcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCC
Confidence 11 1 1111 0111111 1244443444455667789999999988866 457763
No 59
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.51 E-value=9.5e-07 Score=86.06 Aligned_cols=134 Identities=22% Similarity=0.228 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC--CcHHHHHHHHHHh
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 170 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~--~D~~~A~~vA~~l 170 (474)
+.+...|++-+++. ....+.+.||||+||+++|+++.+.+.. .++.++.+....+ .|...|+.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 45566666666653 2356789999999999999999988742 3677887753222 3788999999999
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhc-cCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le-~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
|++|+++.+++ ..+.+.+.+.... ......+.+-+-|-.+...+...+ .+|+...--+|.+.||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~-~lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYN-YLVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc-eEEecCCcHHHhhcCccc
Confidence 99999988753 3343333222111 000001111112222333344444 345544446788888853
No 60
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.50 E-value=7.3e-07 Score=92.30 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=72.6
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEE-EeChhhhH-HhHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEF-HFTVQDGI-DAIE 189 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i-~~~~~~~~-~~l~ 189 (474)
++.+++|||+|||+++.++.+.. +.++.++++......|.+.|+++|+.+|+.++++ .+. +++. +.+.
T Consensus 4 kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i~ 73 (399)
T PRK00509 4 KVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYVF 73 (399)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhHH
Confidence 68999999999999999988753 2478999987755579999999999999865444 443 2332 2233
Q ss_pred HHHHh-----hccCCcccccchHHHHHHHHHHHhCCCcEEEEcCch
Q 011948 190 EVIYH-----VETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 190 ~~i~~-----le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
..+.. ...|.++.+......-.+.+.|++.|++++.+|.-+
T Consensus 74 ~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 74 PAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 33322 222332211111112245677888999999999866
No 61
>PRK13981 NAD synthetase; Provisional
Probab=98.50 E-value=1.2e-06 Score=95.13 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC--CcHHHHHHHH
Q 011948 92 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVA 167 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~--~D~~~A~~vA 167 (474)
.+++.+.+...++..+.. ...+.+.||||+||+++++++.+.... .+++++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 345555555666655543 357889999999999999999887632 3688888775543 4788999999
Q ss_pred HHhCCceEEEEeChhhhHHhHHHHHHhh---ccCCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 168 DYLGTVHHEFHFTVQDGIDAIEEVIYHV---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 168 ~~lg~~h~~i~~~~~~~~~~l~~~i~~l---e~~~~~--~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
+.+|++|+++.+++ ..+.+...+... +..+.+ .+.+-+-|-.++..+...|.-|+=||+- +|+.-||-.
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~-sE~~~Gy~t 405 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK-SEMAVGYAT 405 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc-CHHHcCCeE
Confidence 99999999988764 334433333221 111211 1112222334555566666656667665 588888854
No 62
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.47 E-value=1e-06 Score=90.50 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=72.8
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC-------C-----CCCcHHHHHHHHHHhCCceEEEEe
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-------E-----GSPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~-------~-----~~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
.+.+++|||+||++++.++.+.. .++.++++.. . ...|.+.|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 47899999999999999998753 4677777621 1 113788999999999999999887
Q ss_pred ChhhhHHhHHHHHHhh---ccCCcccccchHHH--HHHHHHHHhC-CCcEEEEcCch
Q 011948 180 TVQDGIDAIEEVIYHV---ETYDVTTIRASTPM--FLMSRKIKSL-GVKMVISGEGS 230 (474)
Q Consensus 180 ~~~~~~~~l~~~i~~l---e~~~~~~i~~~~~~--y~l~~~a~~~-G~~vvLsG~Gg 230 (474)
..+-..+.+...+... .+|+ +++.+...+ ..+.+.|++. |+..+.||+-+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpn-pC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPN-PDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-cchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 6432222222222211 2333 333333222 3556777775 99999999998
No 63
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.45 E-value=1.7e-06 Score=88.73 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHH
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 189 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~ 189 (474)
..++.+.+|||+||++++.++.+.. ..+.++++... ..|...|+++|+++|++|+.+.++.+-..+.+.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~ 73 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQG----------YEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIVK 73 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcC----------CcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHH
Confidence 4579999999999999999887643 46778777543 346678999999999999998876432212222
Q ss_pred HHHH---hhccCCcccccch-HH-HHHHHHHHHhCCCcEEEEcCchhh
Q 011948 190 EVIY---HVETYDVTTIRAS-TP-MFLMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 190 ~~i~---~le~~~~~~i~~~-~~-~y~l~~~a~~~G~~vvLsG~GgDE 232 (474)
..+. .-.+|+ +++.+. .. .-.+.+.|.+.|+..+.||+-++-
T Consensus 74 ~~~~~~~~G~tpn-pC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 74 NFIDEYRQGRTPN-PCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HhHHHHHcCCCCC-CchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 2221 112333 233333 22 224678888999999999999953
No 64
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.45 E-value=7.9e-07 Score=84.15 Aligned_cols=153 Identities=22% Similarity=0.342 Sum_probs=89.7
Q ss_pred EEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCCceEEEEeChhhhHH--hHH
Q 011948 114 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGID--AIE 189 (474)
Q Consensus 114 gv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~--~l~ 189 (474)
.++||||+||++++.++.+.. .++.++++.+.. ..|.++|+++|+.+|++|+++.++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 589999999999999887643 468888886543 357899999999999999988876321100 000
Q ss_pred H---HHH-hhccCC---cc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchhhcCCChhHHHHHHHHHHHhh
Q 011948 190 E---VIY-HVETYD---VT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKAL 260 (474)
Q Consensus 190 ~---~i~-~le~~~---~~--~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l 260 (474)
. .+. .....+ .. ..+..+..-.+...|.+.|+..|++|.-.|.+ +.|+. .+..|.+. ++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d-----~~~~f~~~----~~~~ 141 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPD-----CRDEFVKA----FNHA 141 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCC-----CcHHHHHH----HHHH
Confidence 0 000 000000 00 01122212235567888999999999999885 55542 12233332 2221
Q ss_pred cchhhhhcccccccCCceeecccCCH---HHHHHHHc
Q 011948 261 HQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMA 294 (474)
Q Consensus 261 ~~~d~lr~dr~~~a~glE~R~PfLD~---~vve~a~s 294 (474)
.. .....++.+..||++. ++++.+..
T Consensus 142 ~~--------~~~~~~~~i~~Pl~~~~K~eI~~la~~ 170 (201)
T TIGR00364 142 LN--------LGMLTPVKIRAPLMDLTKAEIVQLADE 170 (201)
T ss_pred HH--------hhcCCCeEEEECCcCCCHHHHHHHHHH
Confidence 11 1124568889999762 44444433
No 65
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.45 E-value=1.5e-06 Score=87.62 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHH-HHHhCCceEEEEeChhhhHHh
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEV-ADYLGTVHHEFHFTVQDGIDA 187 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~v-A~~lg~~h~~i~~~~~~~~~~ 187 (474)
.++.+++|||+||++++.++.+..+ .++.++++. +....|.+.+++. ++++|++|+.+..+.. +++.
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~G---------~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~-fl~~ 86 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAIG---------DRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKER-FLSA 86 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHhC---------CCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHH-HHhh
Confidence 6799999999999999999987652 468888775 3334577777665 5589999998887632 2222
Q ss_pred HHHHHHhhccCCcc-cccchHHHHHHHHHHHhCC-CcEEEEcCchhhh
Q 011948 188 IEEVIYHVETYDVT-TIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (474)
Q Consensus 188 l~~~i~~le~~~~~-~i~~~~~~y~l~~~a~~~G-~~vvLsG~GgDEl 233 (474)
+.. ...+... .+....-...+.+.|++.| ++.+++|...|.+
T Consensus 87 l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 87 LKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred hcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 221 1011100 0000111223556677888 9999999887765
No 66
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.41 E-value=2.3e-06 Score=79.25 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=63.2
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CCCCc----HHHHHHHHHHhCCceEEEEeChhhhH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPD----LKYAKEVADYLGTVHHEFHFTVQDGI 185 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~~~D----~~~A~~vA~~lg~~h~~i~~~~~~~~ 185 (474)
.+.++||||+||++++.++.+.. .++.++++.. ....| ...+.+.+..++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 36899999999999999998753 4666666643 33322 3344444466777776544443321
Q ss_pred HhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhh
Q 011948 186 DAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 186 ~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDE 232 (474)
...+......++ .++..+...++ .+.+.|.+.|++++++|+-+|.
T Consensus 70 -~~~~~~~~~~~~-~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEK-YRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCc-cHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 111222221222 22232322233 4556678899999999997665
No 67
>PRK08349 hypothetical protein; Validated
Probab=98.37 E-value=3.1e-06 Score=80.00 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=64.9
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhC----CceEE-EEeChhhh-H
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG----TVHHE-FHFTVQDG-I 185 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg----~~h~~-i~~~~~~~-~ 185 (474)
++.+++|||+||++.+.++.+.. .++.++++.. +..+...++++|++++ .+|+. +.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 46799999999999999887643 4788888765 3456677777777764 77742 33332221 1
Q ss_pred HhHHHHHHhhccCCcccccchHHH-HHHHHHHHhCCCcEEEEcCchhhh
Q 011948 186 DAIEEVIYHVETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 186 ~~l~~~i~~le~~~~~~i~~~~~~-y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
..+..+... +....+++.+...+ ..+.+.|.+.|+..+++|+-.|..
T Consensus 71 ~~~~~~~~~-~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLREL-KKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhh-CCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 122222111 11111222222223 345667778999999999755443
No 68
>PRK00919 GMP synthase subunit B; Validated
Probab=98.36 E-value=3e-06 Score=85.14 Aligned_cols=123 Identities=17% Similarity=0.177 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHhCC
Q 011948 95 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT 172 (474)
Q Consensus 95 lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~lg~ 172 (474)
+.+...+.++.++.. .++.+.+|||+||++++.++.+..+ .++.++++... ...|.+.++++++.+ +
T Consensus 7 ~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~lG---------~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i 75 (307)
T PRK00919 7 FIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAIG---------DRLTPVFVDTGLMRKGETERIKETFSDM-L 75 (307)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHhC---------CeEEEEEEECCCCCHHHHHHHHHHHhcc-C
Confidence 333333455555654 6899999999999999999987542 46888887543 245899999999987 8
Q ss_pred ceEEEEeChhhhHHhHHHHHHhhccCCccc-ccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 173 VHHEFHFTVQDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 173 ~h~~i~~~~~~~~~~l~~~i~~le~~~~~~-i~~~~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
+|+.+.++.. +++.+..+ ..+.... +........+.+.|++.|++.+++|.-.|.+
T Consensus 76 ~~~vvd~~e~-fl~~L~~v----~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 76 NLRIVDAKDR-FLDALKGV----TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CcEEEECCHH-HHHhccCC----CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 8888776532 33332221 1111000 0001112235566778899999999877765
No 69
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.36 E-value=3.2e-06 Score=87.53 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=68.0
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCC-cHHHHHHHHHHhCCc-eEEEEeChhhhHH-hHH
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP-DLKYAKEVADYLGTV-HHEFHFTVQDGID-AIE 189 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~-D~~~A~~vA~~lg~~-h~~i~~~~~~~~~-~l~ 189 (474)
+.+++|||+|||+++.++.+... .++.++++...... +.+.|+++|+.+|.+ |+.+.+.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~---------~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG---------YEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC---------CeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 46899999999999999987642 36888888665433 348999999999996 66655443 3332 333
Q ss_pred HHHHhhcc----CCcccc-cchHHHHHHHHHHHhCCCcEEEEcCch
Q 011948 190 EVIYHVET----YDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 190 ~~i~~le~----~~~~~i-~~~~~~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
..+..... |..++. .-....-.+.+.|++.|++++.+|.-+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 33332211 221111 111112234677888999999777644
No 70
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.35 E-value=4.9e-06 Score=81.77 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHh
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 170 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~l 170 (474)
+.+-+.|.+-+++. .-.-+.+.||||+||+++++++.+.....+.... ...+..+.+-++ .+.+...|+.+|+.+
T Consensus 23 ~~i~~~L~~~l~~~--g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~-~~~~~~~~l~mP~~~~~~~~da~~la~~l 99 (268)
T PRK00768 23 RRRVDFLKDYLKKS--GLKSLVLGISGGQDSTLAGRLAQLAVEELRAETG-DDDYQFIAVRLPYGVQADEDDAQDALAFI 99 (268)
T ss_pred HHHHHHHHHHHHHc--CCCeEEEECCCCHHHHHHHHHHHHHHHHhccccc-CcceeEEEEECCCCCcCCHHHHHHHHHhc
Confidence 33444444444432 2345778999999999999998877642110000 012334554444 245689999999999
Q ss_pred CC-ceEEEEeChhhhHHhHHHHHHhhcc-C-Cc--ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 171 GT-VHHEFHFTVQDGIDAIEEVIYHVET-Y-DV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 171 g~-~h~~i~~~~~~~~~~l~~~i~~le~-~-~~--~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
|+ +|.++.+++ ..+.+.+.+...+. . +. ..+.+-+-|-.++-.|...|.-|+=||.- +|+.-||-.
T Consensus 100 gi~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~-sE~~~Gy~T 170 (268)
T PRK00768 100 QPDRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHA-AEAVTGFFT 170 (268)
T ss_pred CCCeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcc-cHHHhCcee
Confidence 99 788877653 44444433322000 1 10 01111122333444455566555556665 678889854
No 71
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.32 E-value=3.5e-06 Score=87.43 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=70.1
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC-CcHHHHHHHHHHhCCceEEEEeChhhhH-HhH
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGI-DAI 188 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~-~D~~~A~~vA~~lg~~h~~i~~~~~~~~-~~l 188 (474)
.++++++|||+|||+++.++.+.. +.++.++++..... .|.+.|+++|+.+|++|+.+.--.+++. +.+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 478999999999999999987753 24788888866433 5899999999999998755542233333 222
Q ss_pred HHHHHhhcc----CCcccccchHH--HHHHHHHHHhCCCcEEEEcCch
Q 011948 189 EEVIYHVET----YDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 189 ~~~i~~le~----~~~~~i~~~~~--~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
...+..... |...+ ..+-| .-.+.+.|++.|++++.+|.-|
T Consensus 77 ~p~i~~Na~ye~~Y~~~t-sl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGT-SMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceecccc-chhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 222222111 21110 00112 2245677888999999766644
No 72
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.32 E-value=6.6e-06 Score=76.80 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=70.7
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCC--CCcHHHHHHHHHHhCCceEEEEeChhhhHHh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 187 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~--~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~ 187 (474)
++.+.+|||.||++++.++.+..... +.++.++++. +.. ..+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754221 1356777764 332 2368899999999999999988764331100
Q ss_pred HHHHHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 188 IEEVIYHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 188 l~~~i~~le~~~~~~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
. ...+. . .+. .-+-.+.+.+++.|++++++|+-+|++-
T Consensus 75 ---~---~~~~~--~-~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~ 113 (189)
T TIGR02432 75 ---K---KKNLE--E-AAREARYDFFEEIAKKHGADYILTAHHADDQA 113 (189)
T ss_pred ---c---CCCHH--H-HHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH
Confidence 0 00000 0 011 1123456677889999999999888753
No 73
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.31 E-value=4.6e-06 Score=86.39 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=72.2
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCc-ceeEEeecCCC-CCcHHHHHHHHHHhCCceEEEEeChhhhH-HhH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGT-QLHSFCVGLEG-SPDLKYAKEVADYLGTVHHEFHFTVQDGI-DAI 188 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~-~l~tftig~~~-~~D~~~A~~vA~~lg~~h~~i~~~~~~~~-~~l 188 (474)
.+++++|||+||++++.++.+.. +. ++.++++.... ..|.+.++++|+.+|++|+.+.+.. ++. +.+
T Consensus 4 kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~i 73 (394)
T PRK13820 4 KVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDYI 73 (394)
T ss_pred eEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHHH
Confidence 68999999999999999987653 23 68888876533 3588999999999999999877653 233 333
Q ss_pred HHHHHhh---ccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCch
Q 011948 189 EEVIYHV---ETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 189 ~~~i~~l---e~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~Gg 230 (474)
...+... +.|..++..+--..| .+.+.+++.|++++.+|.-|
T Consensus 74 ~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~ 119 (394)
T PRK13820 74 FPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTG 119 (394)
T ss_pred HHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3333321 122111111111122 35667888999999999854
No 74
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.26 E-value=1.6e-05 Score=78.30 Aligned_cols=132 Identities=20% Similarity=0.132 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHh-h-ccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC-CCcHHHHHHHHHH
Q 011948 93 LVLRQAFENAVIKR-L-MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADY 169 (474)
Q Consensus 93 ~~lr~~L~~AV~~r-l-~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~-~~D~~~A~~vA~~ 169 (474)
+.+.+.+.+++++. | ....++.+++|||.||++++.++.+...... ++.++.++++.... ..+.+.++++|+.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~~~~~~~~~~~~~ 85 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPGFPEHVLPEYLES 85 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45666777777763 2 2345799999999999999998876532110 11256777764321 2344578999999
Q ss_pred hCCceEEEEeChhhhHHhHHHHHHhhccCCcccccch-HHHHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 170 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 170 lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
+|++|+.+..+..... ...+. +... +...+. .-..++.+.|.+.|+.++++|+-.|...
T Consensus 86 lgI~~~v~~~~~~~~~---~~~~~--~~~~-~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 86 LGVPYHIEEQDTYSIV---KEKIP--EGKT-TCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred hCCCEEEEEecchhhh---hhhhc--cCCC-hhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 9999998875432211 11000 0000 110011 1223566778889999999999999864
No 75
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.25 E-value=5.7e-06 Score=69.63 Aligned_cols=77 Identities=29% Similarity=0.288 Sum_probs=58.3
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHH
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 192 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i 192 (474)
+.+.+|||.||++++.++.+.. .++.++++...-.+|...+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4689999999999999998754 3577888765444577777777776
Q ss_pred HhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccC
Q 011948 193 YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 236 (474)
Q Consensus 193 ~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgG 236 (474)
.....+.+.+++.|++.+++|+..|.+...
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~ 77 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVANR 77 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHH
Confidence 112345667788899999999999987643
No 76
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=9.8e-06 Score=81.11 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCC--CCcHHHHHHHHHH
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEG--SPDLKYAKEVADY 169 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~--~~D~~~A~~vA~~ 169 (474)
.++.-+.++++...+-+..+.+.+|||.||++++.++.+.... -.+.++++ |+.+ ..+...++.+++.
T Consensus 5 ~~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~ 76 (298)
T COG0037 5 KLERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEK 76 (298)
T ss_pred HHHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHH
Confidence 3444444555443222568999999999999999999886531 14556665 4443 3577899999999
Q ss_pred hCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhcc
Q 011948 170 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFG 235 (474)
Q Consensus 170 lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~-~y~l~~~a~~~G~~vvLsG~GgDElfg 235 (474)
+|.+++...++........+ ... +...+... ..++.+.+.+.|+++++||+-+|....
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~-------~~~-~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~e 135 (298)
T COG0037 77 LGIPLIVERVTDDLGRETLD-------GKS-ICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAE 135 (298)
T ss_pred hCCceEEEEEEeeccccccC-------CCC-hhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHH
Confidence 99988888776543221111 000 01112222 346778889999999999999988653
No 77
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.19 E-value=4.6e-06 Score=86.50 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=56.5
Q ss_pred cceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcce---EeCCCcEEEecC
Q 011948 2 LDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSKS 69 (474)
Q Consensus 2 L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~---~lpPG~~l~~~~ 69 (474)
++|.|++++-|. +.+.++|||.|.|||+|+...++.++||||..+|-...+.|. .|.||..+.++.
T Consensus 326 ~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~ 394 (413)
T cd00713 326 WDGPAAIAFTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDL 394 (413)
T ss_pred CCCcEEEEEEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEEC
Confidence 789999999885 689999999999999999876668999999988854456675 899999987753
No 78
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.19 E-value=9.4e-06 Score=87.43 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHH-HHHHh
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADYL 170 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~-vA~~l 170 (474)
.+.+...+.+++.+. +.++.+++|||+||+++++++.+..+ .++.++++... ..+|...+++ +|+.+
T Consensus 200 ~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~lg---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 269 (511)
T PRK00074 200 NFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKAIG---------DQLTCVFVDHGLLRKNEAEQVMEMFREHF 269 (511)
T ss_pred HHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHHhC---------CceEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 344444455555555 46899999999999999999987652 46777776432 2356666775 67999
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhccCCcc-cccchHHHHHHHHHHHhC-CCcEEEEcCchhhh
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le~~~~~-~i~~~~~~y~l~~~a~~~-G~~vvLsG~GgDEl 233 (474)
|++|+.+.++.. +++.+..+ ..+... .+....-...+.+.+++. |++.+++|+-.|.+
T Consensus 270 gi~~~vvd~~~~-f~~~l~g~----~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 270 GLNLIHVDASDR-FLSALAGV----TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred CCcEEEEccHHH-HHHhccCC----CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 999998876532 22222111 011100 011111223456677788 99999999966665
No 79
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.16 E-value=9.9e-06 Score=84.13 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=68.5
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC-CCcHHHHHHHHHHhCC-ceEEEEeChhhhHHh--
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-- 187 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~-~~D~~~A~~vA~~lg~-~h~~i~~~~~~~~~~-- 187 (474)
.+++++|||+||++++.++.+.. .++.++++.... ..|.+.++++|+.+|+ +|+.+.+.. ++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g----------~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG----------YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC----------CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 37899999999999999887652 468888876543 3588999999999997 787777643 33322
Q ss_pred HHHHHHh---hccCCcccccchHHHH----HHHHHHHhCCCcEEEEcCch
Q 011948 188 IEEVIYH---VETYDVTTIRASTPMF----LMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 188 l~~~i~~---le~~~~~~i~~~~~~y----~l~~~a~~~G~~vvLsG~Gg 230 (474)
++.+... ...|... .++.-. .+.+.|++.|++++..|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~---t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLS---TALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCccccc---chhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 2222110 0112111 111112 25566788999999999743
No 80
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.14 E-value=2.1e-05 Score=72.93 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=68.4
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CC--CcHHHHHHHHHHhCCceEEEEeChhhhHHh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 187 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~--~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~ 187 (474)
.+.+.+|||.||++++.++.+..... +.++.++++... .. .+...++++|+.+|++++.+.......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPK--- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccC---
Confidence 37899999999999999998765311 136778887543 22 478999999999999998772110000
Q ss_pred HHHHHHhhccCCcccccchHHH-HHHHHHHHhCCCcEEEEcCchhhh
Q 011948 188 IEEVIYHVETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 188 l~~~i~~le~~~~~~i~~~~~~-y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
..... ...+.... ..+.+.+.+.|+..+++|+-+|++
T Consensus 72 --------~~~~~-~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 72 --------PGGNL-EAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred --------CCCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 00000 00111122 246677888999999999988875
No 81
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.13 E-value=1.1e-05 Score=80.87 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=70.2
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHhCC-ceEEEEeChhhhHHhH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI 188 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~lg~-~h~~i~~~~~~~~~~l 188 (474)
.+.+++|||+||+++++++.+..+ .++.++++... ...|.+.++++++.+|. +|+.+.++. .+++.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG---------~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e-~fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIG---------DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE-RFLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhC---------CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH-HHHHHh
Confidence 367899999999999999988642 46778777543 24588999999998886 888887653 222222
Q ss_pred HHHHHhhccCCccc-ccchHHHHHHHHHHHhCC-CcEEEEcCchhhh
Q 011948 189 EEVIYHVETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (474)
Q Consensus 189 ~~~i~~le~~~~~~-i~~~~~~y~l~~~a~~~G-~~vvLsG~GgDEl 233 (474)
.. ...+.... +....-.-.+.+.|++.| ++.+++|.-.|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 10010000 000011124566778889 9999999988776
No 82
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.10 E-value=1.8e-05 Score=82.65 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=68.8
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec---CCCCCcHHHHHHHHHHhC-----CceEEEEeCh
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLG-----TVHHEFHFTV 181 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig---~~~~~D~~~A~~vA~~lg-----~~h~~i~~~~ 181 (474)
+.++.++||||+||++++.++.+.. .++.+.++. +....+...++++|+.++ .+|+.+.+++
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~ 245 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTE 245 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHH
Confidence 4567799999999999999987643 456666652 222346788888888885 8898888764
Q ss_pred hhhHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhhc
Q 011948 182 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 182 ~~~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
.. +.+ ..... .....+..--.+| .+.+.|.+.|+.++.||+-.|.+.
T Consensus 246 ~~--~~i---~~~~~-~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 246 IQ--EEI---KKKVP-ESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred HH--HHH---hhcCC-CceEEEeHHHHHHHHHHHHHHHcCCCEEEEcccccccc
Confidence 21 111 11111 0111111112233 345667789999999999876653
No 83
>PLN02347 GMP synthetase
Probab=98.08 E-value=1.9e-05 Score=85.29 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=59.2
Q ss_pred HHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHH-HHHHHHhCCceEEE
Q 011948 101 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYA-KEVADYLGTVHHEF 177 (474)
Q Consensus 101 ~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A-~~vA~~lg~~h~~i 177 (474)
+.++..+..+.++.+.||||+||+++|+++.+..+ .++.++++. +-...|...+ +.+|+++|++|+.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG---------~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIG---------DRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhC---------CcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 44455566677899999999999999999998653 468888875 3334466555 77999999999999
Q ss_pred EeChhhhHHhHHH
Q 011948 178 HFTVQDGIDAIEE 190 (474)
Q Consensus 178 ~~~~~~~~~~l~~ 190 (474)
.+++ .+++.|+.
T Consensus 291 d~~e-~fl~~l~~ 302 (536)
T PLN02347 291 DASE-RFLSKLKG 302 (536)
T ss_pred eCcH-HHHhhCCC
Confidence 8764 34444433
No 84
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.06 E-value=2.7e-05 Score=71.46 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=61.1
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 189 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~ 189 (474)
++.+++|||+||++++.++.+.. .++.++++.+. ...|.+.++++++.+| ++..+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR--------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc---------
Confidence 36799999999999998887643 36778887653 2347789999999999 33322110
Q ss_pred HHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 190 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 190 ~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
.....-++.+.+.+.|++.+++|+-.|+.
T Consensus 61 ---------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 61 ---------------NLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ---------------CHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 00001134566678899999999999885
No 85
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.02 E-value=5.7e-05 Score=84.21 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCC--cHHHHHHHH
Q 011948 92 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVA 167 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~--D~~~A~~vA 167 (474)
.+++.+.+...+++++.. ...+.+.||||+||+++++++.+....... -..++.++++...++. +...|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 345555666666666642 457889999999999999988877421000 0036777777433333 568999999
Q ss_pred HHhCCceEEEEeChhhhHHhHHHHHHhh-----ccCCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchh
Q 011948 168 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-----ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (474)
Q Consensus 168 ~~lg~~h~~i~~~~~~~~~~l~~~i~~l-----e~~~~~--~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~ 240 (474)
+.||++|+++.+.+ ..+...+.+.+. +..+.+ .+.+-+-+..|...+.+.|.-|+-||+- +|++-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn~-sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGDL-SELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCch-hhHHhCceec
Confidence 99999999998743 333322222211 001111 1122234566777788889988889965 5788888654
Q ss_pred h
Q 011948 241 H 241 (474)
Q Consensus 241 ~ 241 (474)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 4
No 86
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.8e-05 Score=75.43 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=76.2
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee----cCC-------CCCcHHHHHHHHHHhCCceEEEEe
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV----GLE-------GSPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti----g~~-------~~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
..|.|++|||+|||+-|.++++.+ .++..+-+ +++ ...|.+.|+.|+++|+++.|.+.+
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 468999999999999999988765 34544432 111 124899999999999999999999
Q ss_pred ChhhhHHhHHHHHHhhc---cCCcccccch-HHHHH-HHHHHH-hCCCcEEEEcCchhhhccCCc
Q 011948 180 TVQDGIDAIEEVIYHVE---TYDVTTIRAS-TPMFL-MSRKIK-SLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 180 ~~~~~~~~l~~~i~~le---~~~~~~i~~~-~~~y~-l~~~a~-~~G~~vvLsG~GgDElfgGY~ 238 (474)
..|-+.+.+..++..-+ +|++ .|.+. ..-|- +.+.|. ..|...+-||+.|--+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNP-DI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNP-DILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 87766666655543221 2322 12221 01111 233333 357889999999877776543
No 87
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2.7e-05 Score=69.54 Aligned_cols=62 Identities=32% Similarity=0.334 Sum_probs=48.8
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD 183 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~ 183 (474)
.+++++|||-|||+-|-++.+.+ ..++..|+.|.--+..++|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 47899999999999998888874 244444444433578899999999999999999987543
No 88
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.96 E-value=5.5e-05 Score=72.62 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=58.1
Q ss_pred EecCCcccHHHHHHHHHHhhcccccccccCccee-EEeecCC-------CCCcHHHHHHHHHHhCCceEEEEeChhhhHH
Q 011948 115 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLE-------GSPDLKYAKEVADYLGTVHHEFHFTVQDGID 186 (474)
Q Consensus 115 v~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~-tftig~~-------~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~ 186 (474)
+++|||+||++.+..+.+.. ..+. .+++..+ ...+.+.++++|+.+|++|+.+.++... .+
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999998887743 3443 3343221 1358899999999999999988875210 00
Q ss_pred hHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchh
Q 011948 187 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (474)
Q Consensus 187 ~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgD 231 (474)
..+ .++...+.+++.|++.+.+|.=.+
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~s 97 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIAS 97 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCccc
Confidence 000 023333445555999999998766
No 89
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.96 E-value=5.8e-05 Score=77.80 Aligned_cols=109 Identities=23% Similarity=0.272 Sum_probs=68.6
Q ss_pred EecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC-CcHHHHHHHHHHhCC-ceEEEEeChhhhHHhHHHHH
Q 011948 115 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGT-VHHEFHFTVQDGIDAIEEVI 192 (474)
Q Consensus 115 v~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~-~D~~~A~~vA~~lg~-~h~~i~~~~~~~~~~l~~~i 192 (474)
++.|||||||.++..+.+... .+++||++..-.. .|.+.+++-|..+|. +|+.+....+-.-+.+-..|
T Consensus 2 LAySGGLDTS~~l~~L~e~~~---------~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI 72 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGG---------YEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAI 72 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTT---------EEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHH
T ss_pred eeeCCChHHHHHHHHHHhhcC---------ceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHH
Confidence 679999999999998887652 4799999876444 689999999999998 88888765443335554555
Q ss_pred Hhh----ccCCcccccchHHH--HHHHHHHHhCCCcEEE---EcCchhhh
Q 011948 193 YHV----ETYDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 233 (474)
Q Consensus 193 ~~l----e~~~~~~i~~~~~~--y~l~~~a~~~G~~vvL---sG~GgDEl 233 (474)
... ..|-..+ ..+-|. -.+.+.|++.|++++. ||-|-|++
T Consensus 73 ~anA~Yeg~YpL~t-sl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 73 KANALYEGRYPLST-SLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HTT--BTTTB--CC-CCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHhCCCccccc-cchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 432 2232211 112222 1345667888999887 67788876
No 90
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.95 E-value=3.3e-05 Score=80.03 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=67.4
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC---CCcHHHHHHHHHHhC---CceEEEEeChh
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG---TVHHEFHFTVQ 182 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~---~~D~~~A~~vA~~lg---~~h~~i~~~~~ 182 (474)
++.++.++||||+||++.+.++.+.. .++.++++.... ..+...++.+++.++ .+.+.+.++..
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~ 240 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFT 240 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCH
Confidence 34568899999999999999887643 467766665432 246788999999884 32233333323
Q ss_pred hhHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 011948 183 DGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 183 ~~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
+.. .++....+. ...++.+--.+| .+.+.|.+.|+..+.||+-.|.+
T Consensus 241 ~~~---~~i~~~~~~-~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 241 DVQ---EEIIHIIPE-GYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHH---HHHHhcCCC-CceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 322 232222111 111221212233 34556778899999999998875
No 91
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.95 E-value=1.8e-05 Score=87.84 Aligned_cols=73 Identities=18% Similarity=0.384 Sum_probs=61.2
Q ss_pred CcceEEEEEEEE-CCCCEEEEEeccCCCceEEEEEecC--------------------ceEEEecCccchhcccCcceEe
Q 011948 1 MLDGMFSFVLLD-TRDNSFIVARDAIGITSLYIGWGLD--------------------GSIWISSELKGLNDDCEHFEAF 59 (474)
Q Consensus 1 ~L~G~FAf~i~D-~~~~~l~laRD~~G~kPLyy~~~~~--------------------g~~~faSeik~L~~~~~~I~~l 59 (474)
+|+|+|||++.. ...++++++||+ +||+++..++ +.++||||+.+|...++.|..|
T Consensus 187 ~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l 263 (670)
T PTZ00394 187 MVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTREVVFL 263 (670)
T ss_pred HccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHHhhceEEEe
Confidence 589999999985 345899999999 9999998631 4799999999999999999999
Q ss_pred CCCcEEEecCCeeEEeeC
Q 011948 60 PPGHLYSSKSGGLKRWYN 77 (474)
Q Consensus 60 pPG~~l~~~~~~~~~y~~ 77 (474)
++|++..+..+.+ ++|+
T Consensus 264 ~dg~~~~~~~~~~-~~~~ 280 (670)
T PTZ00394 264 EDGDIAHYCDGAL-RFYN 280 (670)
T ss_pred cCCeEEEEECCEE-EEEe
Confidence 9999988765543 4443
No 92
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.93 E-value=6.6e-05 Score=77.73 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=68.3
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCc-------eEEEEeCh
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-------HHEFHFTV 181 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~-------h~~i~~~~ 181 (474)
+..++.++||||+||++.+.++.+.. .++.++++.. +..+.+.++++|+.|+.. ++.+.++.
T Consensus 179 s~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~-g~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~ 247 (381)
T PRK08384 179 TQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYM-GEKTLEKVRKIWNQLKKYHYGGKAELIVVKPQE 247 (381)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEe-CHHHHHHHHHHHHHhcccccCCcceEEEEChHH
Confidence 45678899999999999999988754 4676666643 235678899999998843 33333321
Q ss_pred h-hhHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 011948 182 Q-DGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 182 ~-~~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
. ++.+.+.+.. .+.+ +++.+...+| .+.+.|++.|+..+.||+-.+.+
T Consensus 248 ~~~v~~~i~~~~--~~~~--~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 248 RERIIQKLKELK--KENY--TCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHhc--cCCC--chHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 1 1222221110 1111 2332322344 45566778999999999977665
No 93
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.93 E-value=7.8e-05 Score=70.24 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=60.6
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC---C-----CCcHHHHHHHHHHhCCceEEEEeChhh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---G-----SPDLKYAKEVADYLGTVHHEFHFTVQD 183 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~---~-----~~D~~~A~~vA~~lg~~h~~i~~~~~~ 183 (474)
++.+++|||.||++.+.++.+.. .++.++++-.+ + ..+.+.++++|+.+|++|+.+.++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 36799999999999999888753 34544443221 1 137889999999999999988764311
Q ss_pred hHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 011948 184 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 184 ~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDE 232 (474)
-+.. -.++...+.+++.|++.+.+|.-.++
T Consensus 71 -e~~~------------------~~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 -EDEV------------------EDLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred -hHHH------------------HHHHHHHHHHHHcCCCEEEECccccH
Confidence 1111 01222233334448999999988766
No 94
>PRK05370 argininosuccinate synthase; Validated
Probab=97.93 E-value=8.3e-05 Score=77.24 Aligned_cols=118 Identities=20% Similarity=0.150 Sum_probs=79.6
Q ss_pred HhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCC-ceEEEEeCh
Q 011948 105 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTV 181 (474)
Q Consensus 105 ~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~-~h~~i~~~~ 181 (474)
+.|....+|+++.|||||||+++..+.+.. ..+.||++..-. ..|.+.+++-|..+|. +|+.+....
T Consensus 6 ~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~----------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~ 75 (447)
T PRK05370 6 KHLPVGQRVGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA 75 (447)
T ss_pred hhCCCCCEEEEEecCCchHHHHHHHHHhcC----------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH
Confidence 345556689999999999999998887642 479999976533 4688999999999999 577776654
Q ss_pred hhhHHhHHHHHHhh-------c-cCCcc-cccchHHHHHHHHHHHhCCCcEEE---EcCchhhh
Q 011948 182 QDGIDAIEEVIYHV-------E-TYDVT-TIRASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 233 (474)
Q Consensus 182 ~~~~~~l~~~i~~l-------e-~~~~~-~i~~~~~~y~l~~~a~~~G~~vvL---sG~GgDEl 233 (474)
+-.-+.+ ..|... | .|... .+...+..-.+.+.|++.|++++- ||-|-|++
T Consensus 76 eF~e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGI-AAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHH-HHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 4333445 555432 2 13221 111111122356778889999887 77788887
No 95
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.92 E-value=6.8e-05 Score=69.75 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=62.2
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCC--CcHHHHHHHHHHhCCceEEEEeChhhhHHhH
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 188 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~--~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l 188 (474)
+.+.+|||.||.+++.++.+..... +.++.++++. +... .|....++.++.+|++++...++...
T Consensus 2 i~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~----- 70 (182)
T PF01171_consen 2 ILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDR----- 70 (182)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHC-----
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeee-----
Confidence 7899999999999999998875432 2367777764 4332 36788999999999999988876410
Q ss_pred HHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 011948 189 EEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 189 ~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
..-......+...-| ++.+.+++.|+.++++|+=.|..
T Consensus 71 -------~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 71 -------KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp -------CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred -------cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000000111222 56778889999999999999875
No 96
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.83 E-value=9.6e-05 Score=66.87 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=68.9
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 189 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~ 189 (474)
++.+.+|||.||++++.++.+...+. .++..+++. .+-....++++++++.+|.+++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998765310 145555553 332345789999999999999888765432111 00
Q ss_pred HHHHhhccCCcccccchH---HHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 011948 190 EVIYHVETYDVTTIRAST---PMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (474)
Q Consensus 190 ~~i~~le~~~~~~i~~~~---~~y~l~~~a~~~G~~vvLsG~GgDElfg 235 (474)
..... ..+.....+... =.-.+.+.+++.|..++++|.=+||...
T Consensus 73 ~~~~~-~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKG-FPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred Hhhhc-cCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11111 111101111100 0112445566678899999999999754
No 97
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.83 E-value=3.6e-05 Score=85.80 Aligned_cols=69 Identities=13% Similarity=0.380 Sum_probs=58.7
Q ss_pred CcceEEEEEEEECC-CCEEEEEeccCCCceEEEEEec--C---------------------ceEEEecCccchhcccCcc
Q 011948 1 MLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGL--D---------------------GSIWISSELKGLNDDCEHF 56 (474)
Q Consensus 1 ~L~G~FAf~i~D~~-~~~l~laRD~~G~kPLyy~~~~--~---------------------g~~~faSeik~L~~~~~~I 56 (474)
+|+|+|||++.+.. .++++++||+ +||+++..+ + +.++||||..+|....+.|
T Consensus 181 ~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~ 257 (680)
T PLN02981 181 QLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHTKRV 257 (680)
T ss_pred hccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhcCEE
Confidence 58999999999965 4899999996 899988752 1 3699999999999999999
Q ss_pred eEeCCCcEEEecCCee
Q 011948 57 EAFPPGHLYSSKSGGL 72 (474)
Q Consensus 57 ~~lpPG~~l~~~~~~~ 72 (474)
..|+||+++.++.+.+
T Consensus 258 ~~l~~gei~~i~~~~~ 273 (680)
T PLN02981 258 LVIEDNEVVHLKDGGV 273 (680)
T ss_pred EEECCCeEEEEECCeE
Confidence 9999999998865443
No 98
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.76 E-value=0.0005 Score=67.71 Aligned_cols=139 Identities=20% Similarity=0.224 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhc--cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHH
Q 011948 94 VLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADY 169 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~--sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~ 169 (474)
+..+.+.+-++.++. .-..+.+-||||+||+++++++.+...+.. ....+.++..... ...+..-|+.+++.
T Consensus 7 ~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~----~~~~~~av~mP~~~~~~~~~~da~~~~~~ 82 (268)
T COG0171 7 EEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGD----SKENVLAVRLPYGYTVQADEEDAQDLAEA 82 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhcccc----chhheeeEECCCCCccccCHHHHHHHHHH
Confidence 334444444454443 134577899999999999999998875310 0023666665544 34578899999999
Q ss_pred hCCceEEEEeChhhhHHhH-HHHHHhhcc-----CCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 170 LGTVHHEFHFTVQDGIDAI-EEVIYHVET-----YDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 170 lg~~h~~i~~~~~~~~~~l-~~~i~~le~-----~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
+|++..++.+.+ ..+.+ ..+...... +....+.+-+-|-.++..|.+.|.=|+=||+ .+|+.-||-.
T Consensus 83 lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn-~sE~~~Gy~T 155 (268)
T COG0171 83 LGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGN-KSELALGYFT 155 (268)
T ss_pred hCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCc-HHHHhcCcee
Confidence 999977766543 34443 222221111 1111122222344444455556544444555 5788899853
No 99
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.73 E-value=0.00045 Score=69.41 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhH
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 188 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l 188 (474)
..+.+++|||.||++++.++.+..... ..++..+++. +.-....+++.++++.+|++++.+... +.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 467899999999999999998875321 1245566654 321234689999999999998877532 211
Q ss_pred HHHHHhhccCCcc-cccch-HHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 189 EEVIYHVETYDVT-TIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 189 ~~~i~~le~~~~~-~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
......+... ...+. .-...+.+.+++.|++++++|.=.||-
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~ 140 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEE 140 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchh
Confidence 1111111110 00011 112345677778899999999999883
No 100
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.69 E-value=0.00022 Score=76.47 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=65.0
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--C--CcHHHHHHHHHHhCCceE--EEEeChhh
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--S--PDLKYAKEVADYLGTVHH--EFHFTVQD 183 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~--~D~~~A~~vA~~lg~~h~--~i~~~~~~ 183 (474)
..++.++||||+||++.+.++.+.. .++.++++.+.. + .+.+.++.+++.++..|. .+.++-.+
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~ 246 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEP 246 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHH
Confidence 3457799999999999998887653 467766654322 1 267889999988875444 33333222
Q ss_pred hHHhHHHHHHhhccCCcccccchHHHHHH-HHHHHhCCCcEEEEcCchhhhc
Q 011948 184 GIDAIEEVIYHVETYDVTTIRASTPMFLM-SRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 184 ~~~~l~~~i~~le~~~~~~i~~~~~~y~l-~~~a~~~G~~vvLsG~GgDElf 234 (474)
.. .++....+ .....+-.-.-|+.+ .+.|.+.|++.+.||+-.|++-
T Consensus 247 ~~---~~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dva 294 (482)
T PRK01269 247 VV---GEILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVS 294 (482)
T ss_pred HH---HHHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhh
Confidence 22 22222111 110110000112222 4567788999999999988763
No 101
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00012 Score=75.62 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=55.4
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEe
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSS 67 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~ 67 (474)
++.|.|++++... +.|+.+|||.|+|||-++...+|..+||||-.+|-.. .+-++.++||..+.+
T Consensus 160 ~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i 225 (470)
T COG0034 160 RVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVII 225 (470)
T ss_pred hcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEE
Confidence 4689999999875 4999999999999999998756779999998888654 456899999999874
No 102
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.63 E-value=0.00035 Score=65.30 Aligned_cols=120 Identities=23% Similarity=0.204 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhccC----------CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC---CCc-
Q 011948 94 VLRQAFENAVIKRLMTD----------VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPD- 159 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd----------~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~---~~D- 159 (474)
++.+.|++.++.||... ..+.|++|||.|||+.+-++.... |++..-. .+.
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g---------------~~v~p~t~~Lp~~i 98 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG---------------FTVDPGTAILPDHI 98 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc---------------eeeccccccCCHHH
Confidence 45666777778888532 678999999999999987776543 3332111 123
Q ss_pred HHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHH-hhccCCcccccc-hHHHHHHHHHHHhCCCcEEEEcCchhhhccCC
Q 011948 160 LKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIY-HVETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (474)
Q Consensus 160 ~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~-~le~~~~~~i~~-~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY 237 (474)
..-+...+..+|+.+..+.. .+.++.. .+..-..++-|+ +..+-.+..+|++.+++++.+|++ |-.||
T Consensus 99 r~n~~~l~~~lg~~p~yvee-------dl~~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~ 168 (255)
T COG1365 99 RRNKEELETLLGEVPEYVEE-------DLEDIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGY 168 (255)
T ss_pred hHHHHHHHHHHccCHHHHHH-------HHHHHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---ccccc
Confidence 34567788899987654421 2222222 122222234454 345567788999999999999765 55677
Q ss_pred c
Q 011948 238 L 238 (474)
Q Consensus 238 ~ 238 (474)
.
T Consensus 169 ~ 169 (255)
T COG1365 169 G 169 (255)
T ss_pred c
Confidence 5
No 103
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00052 Score=69.73 Aligned_cols=114 Identities=22% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC-CCcHHHHHHHHHHhCCc-eEEEEeChhhhHHh
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 187 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~-~~D~~~A~~vA~~lg~~-h~~i~~~~~~~~~~ 187 (474)
-..|+++.|||||+|++.-.+.+... ..+.|||+..-. .+|...+++-|..+|.. |+.+....+-.-+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~---------~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~y 74 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGG---------AEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDY 74 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcC---------ceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHH
Confidence 35688999999999999998887652 578999976644 47999999999999987 66666654433344
Q ss_pred HHHHHHhh---cc-CCccc-c-cchHHHHHHHHHHHhCCCcEEE---EcCchhhh
Q 011948 188 IEEVIYHV---ET-YDVTT-I-RASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 233 (474)
Q Consensus 188 l~~~i~~l---e~-~~~~~-i-~~~~~~y~l~~~a~~~G~~vvL---sG~GgDEl 233 (474)
+-.++... |. |...+ + |.-++. .+-+.|++.|+..+- ||-|-|.+
T Consensus 75 i~~~i~ana~Yeg~YpL~TalaRPLIak-~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 75 IFPAIKANALYEGVYPLGTALARPLIAK-KLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHhhceeeccccccchhhHHHHHH-HHHHHHHHcCCCEEEecCCCCCCcee
Confidence 44444432 33 33221 1 111111 234567788888775 77888887
No 104
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.62 E-value=0.00019 Score=67.54 Aligned_cols=110 Identities=17% Similarity=0.262 Sum_probs=54.2
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec---CCCCCcHHHHHHHHHHhC-----CceEEEEeCh
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLG-----TVHHEFHFTV 181 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig---~~~~~D~~~A~~vA~~lg-----~~h~~i~~~~ 181 (474)
..++-++||||+||.+-+.++.+.+ -.+...++. +.+......++++++.+. .....+.++.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4567899999999999888887653 355554442 333334555666666553 2233333333
Q ss_pred hhhHHhHHHHHHhhccCCcccccchHHHHHHHH-HHHhCCCcEEEEcCchhhh
Q 011948 182 QDGIDAIEEVIYHVETYDVTTIRASTPMFLMSR-KIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 182 ~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~-~a~~~G~~vvLsG~GgDEl 233 (474)
.+ .+.++..... ...+++..-..||.+++ .|.+.|++.++|||---++
T Consensus 73 ~~---~~~~i~~~~~-~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TE---VQKEILRGVK-ERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HH---HHHHHHHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HH---HHHHHHhcCC-ccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 33 2333333321 11223433344565544 5567899999999864443
No 105
>PRK08576 hypothetical protein; Provisional
Probab=97.61 E-value=0.00063 Score=71.54 Aligned_cols=120 Identities=23% Similarity=0.204 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhccCC--CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CCCCcHHHHHHHHHHh
Q 011948 95 LRQAFENAVIKRLMTDV--PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYL 170 (474)
Q Consensus 95 lr~~L~~AV~~rl~sd~--pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~~~D~~~A~~vA~~l 170 (474)
+-+.+++.+.+-+.... ++.+.+|||.||++++.++.+.. .++.++++.. ......++++++++.+
T Consensus 217 ~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~----------~~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 217 VLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAF----------GDVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 44455555444444333 79999999999999998888765 2466666643 2223578999999999
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhh
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~--~y~l~~~a~~~G~~vvLsG~GgDE 232 (474)
|++++....+... .+.....+... .+.+.- ...+.+.+++.|+.++++|+=.||
T Consensus 287 GI~lii~~v~~~~-------~~~~~g~p~~~-~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 287 GVDLIRAGVDVPM-------PIEKYGMPTHS-NRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred CCCEEEcccCHHH-------HhhhcCCCCcc-cchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 9998763222111 01100011111 111111 124556677789999999987777
No 106
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.52 E-value=0.00072 Score=71.57 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=54.5
Q ss_pred HHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CC-CC-cHHHHHHHHHHhCCceEE
Q 011948 101 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EG-SP-DLKYAKEVADYLGTVHHE 176 (474)
Q Consensus 101 ~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~-~~-D~~~A~~vA~~lg~~h~~ 176 (474)
+.....+....++.+.+|||.||.+++.++.+..... .+.++.++++.. .. ++ +..+++.+|+.+|++++.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~ 80 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVV 80 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEE
Confidence 3444556667789999999999999999887643110 124677777653 32 33 458899999999999998
Q ss_pred EEeCh
Q 011948 177 FHFTV 181 (474)
Q Consensus 177 i~~~~ 181 (474)
+.++.
T Consensus 81 ~~~~~ 85 (436)
T PRK10660 81 ERVQL 85 (436)
T ss_pred EEEec
Confidence 87764
No 107
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.51 E-value=8.9e-05 Score=80.45 Aligned_cols=91 Identities=24% Similarity=0.254 Sum_probs=79.0
Q ss_pred cccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCcchhhhHH-
Q 011948 270 KSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID- 348 (474)
Q Consensus 270 r~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~- 348 (474)
+ +|+.++|.|+||+|. ++++.+||.+.|... ..+|+++|.+.+. .+|+.++.|+|.+|..+.. .|..
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~----~~gk~~lr~~~~~----~~p~~~~~r~k~~~~~~~~-~~~~~ 486 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAF----GYGKGILRIAYEK----ILPDFILSRKKLGFPKPLW-GRYYE 486 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhc----CCcchhhHhhhhc----cCcHHHhcccccCCCcccc-ccccc
Confidence 7 899999999999999 999999999999985 3579999999999 9999999999999999976 4553
Q ss_pred -HHHHHHHHhhccHHHHhccccCCC
Q 011948 349 -GLKAHAEQHVTDKMVQNAQYIFPH 372 (474)
Q Consensus 349 -~l~~~~~~~l~d~~l~~~~~~~~~ 372 (474)
...+++.+++.++.....++++..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (542)
T COG0367 487 NSLLLWLYRLIEEEFSPEYPLVDLA 511 (542)
T ss_pred chHHHHHHHHHhhhcccccchhhhH
Confidence 357888999888877777777753
No 108
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00033 Score=70.61 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=56.2
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCc----eEEEecCccchhcc-cCcceEeCCCcEEEecCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDG----SIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG 70 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g----~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~ 70 (474)
+++|.|+.++.-. ++++..|||+|.|||..+...+. .++||||-.++... ..-.+.+.||.++.+...
T Consensus 163 ~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~ 235 (474)
T KOG0572|consen 163 LLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRN 235 (474)
T ss_pred hcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecC
Confidence 3789999998754 56999999999999999876332 79999999888876 567889999999887643
No 109
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.47 E-value=0.0015 Score=73.06 Aligned_cols=89 Identities=25% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHH-------HHhhcccc--c----------ccccCc------
Q 011948 93 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASIT-------ARHLAGTK--A----------ARQWGT------ 145 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala-------~~~~~~~~--~----------~~~~~~------ 145 (474)
+++...+.-.+..+++. -..+.+.||||+||+++|+++ .+...... . ...+.+
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 45666666666666642 345778999999999988885 33331100 0 000000
Q ss_pred --c-eeEEeecCCCCC--cHHHHHHHHHHhCCceEEEEeCh
Q 011948 146 --Q-LHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 146 --~-l~tftig~~~~~--D~~~A~~vA~~lg~~h~~i~~~~ 181 (474)
+ +++.+.+..++. ....|+++|+.||+.|+++.+++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 1 456555544443 56889999999999999998764
No 110
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.97 E-value=0.0019 Score=75.89 Aligned_cols=65 Identities=22% Similarity=0.171 Sum_probs=52.8
Q ss_pred cceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCc-ce--EeCCCcEEEec
Q 011948 2 LDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEH-FE--AFPPGHLYSSK 68 (474)
Q Consensus 2 L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~-I~--~lpPG~~l~~~ 68 (474)
++|-|++++-|. +.+++.|||.|.|||-|+...++.+++|||..++--.-.. |+ .|.||..+.++
T Consensus 336 wdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 336 WDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred CCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 589999999985 7999999999999997766667789999998776433333 44 79999998764
No 111
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=96.91 E-value=0.0078 Score=60.22 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC-CCCc-HHHHHHHHHHhCCc
Q 011948 96 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTV 173 (474)
Q Consensus 96 r~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~-~~~D-~~~A~~vA~~lg~~ 173 (474)
.+.|++++.. . +.| .+++|||.||++++.++.+...+. ..++..+++... .-+| .++..++++.+|++
T Consensus 9 i~ilRe~~~~-f--~~~-vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~ 78 (294)
T TIGR02039 9 IHIIREVAAE-F--ERP-VMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLR 78 (294)
T ss_pred HHHHHHHHHh-c--CCc-EEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 3445444443 1 334 578999999999999998876421 135666766421 1334 57899999999999
Q ss_pred eEEEEeChhhhHHhHHHHHHhhccCCc-cc-ccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 174 HHEFHFTVQDGIDAIEEVIYHVETYDV-TT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 174 h~~i~~~~~~~~~~l~~~i~~le~~~~-~~-i~~~~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
++.+... +... +....+.. +. .....-...|.+.+.+.|.+++++|.=-||-
T Consensus 79 l~v~~~~--~~~~------~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 79 LIVHSNE--EGIA------DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred EEEEech--hhhh------cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 8877643 2111 01111110 00 0111223456677778899999999988885
No 112
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.012 Score=57.42 Aligned_cols=75 Identities=24% Similarity=0.258 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHH-HHHh
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEV-ADYL 170 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~v-A~~l 170 (474)
.+.+...+.++.++. +..+-+.||||+|||..|.++.+... .++++.-+ |+-.-.|.+...++ .+++
T Consensus 6 ~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiG---------d~l~cvfVD~GLlR~~E~e~V~~~f~~~~ 75 (315)
T COG0519 6 NFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIG---------DQLTCVFVDHGLLRKGEAEQVVEMFREHL 75 (315)
T ss_pred HHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhh---------cceEEEEecCCcccCCcHHHHHHHHHhhc
Confidence 445555566666665 67889999999999999999998774 56777665 33334555544444 5568
Q ss_pred CCceEEEE
Q 011948 171 GTVHHEFH 178 (474)
Q Consensus 171 g~~h~~i~ 178 (474)
|++...+.
T Consensus 76 ~~nl~~Vd 83 (315)
T COG0519 76 GLNLIVVD 83 (315)
T ss_pred CCceEEEc
Confidence 88776554
No 113
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.67 E-value=0.0085 Score=58.40 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=45.5
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEEeC
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFT 180 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~~~ 180 (474)
.+.+.+|||.||++++-++.+.. .++..+.+ |+.-..-.++++++++++|++++++...
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~ 102 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPD 102 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 58999999999999999998754 35666665 4432224679999999999999888654
No 114
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=96.64 E-value=0.0067 Score=59.67 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=49.7
Q ss_pred eEEEEEEEECCCCEEEEEeccCCCceEEEEEec-----------------CceEEEecCccchhcccCcceEeCCCcEEE
Q 011948 4 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-----------------DGSIWISSELKGLNDDCEHFEAFPPGHLYS 66 (474)
Q Consensus 4 G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~-----------------~g~~~faSeik~L~~~~~~I~~lpPG~~l~ 66 (474)
|.|+|++.|. .+++++||+. ++||||.... ++.++||||.-+... +.+.+|||+.+.
T Consensus 180 ~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~~---~w~~v~~ge~~~ 253 (257)
T cd01908 180 GRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDE---GWTEVPPGELVV 253 (257)
T ss_pred eEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCCC---CceEeCCCEEEE
Confidence 7899999886 6799999999 8999999753 368999999655433 799999999988
Q ss_pred ecC
Q 011948 67 SKS 69 (474)
Q Consensus 67 ~~~ 69 (474)
++.
T Consensus 254 i~~ 256 (257)
T cd01908 254 VSE 256 (257)
T ss_pred EeC
Confidence 754
No 115
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=96.55 E-value=0.0075 Score=59.18 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=47.7
Q ss_pred EEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCee
Q 011948 6 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 72 (474)
Q Consensus 6 FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~ 72 (474)
|+|++-|. .++++.||+. ||||... ++.++||||- |-.. ..++.+|||+.+.++++++
T Consensus 189 ~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~-~~W~~v~pge~v~i~~~~v 246 (251)
T TIGR03442 189 LNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD-PGWQDVPDRHLLSVSEDDV 246 (251)
T ss_pred eEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC-CCceEeCCCeEEEEECCcE
Confidence 99999885 6899999987 9999986 5679999996 4332 4899999999999876654
No 116
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.42 E-value=0.012 Score=53.65 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=56.2
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCc-HHHHHHHHHHhCCceEEEEeChhhhHHhHHHH
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 191 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D-~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~ 191 (474)
+.+.+|||-||++++.++.+...+ .++.....|.+ .+| .++++.+++.+|++.+.+... ......+...
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~~--------~~vv~~dtg~e-~p~t~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 71 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGRK--------VPVVFIDTGYE-FPETYEFVDELAKRYGIPIIVYRPP-ETFEQRFILY 71 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT--------CEEEEEE-STB--HHHHHHHHHHHHHTTCEEEEEETT-SHHHHHHHHH
T ss_pred eEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEecCcc-CHHHHHHHHHHHhhhhhhhhhcccc-cchhhccccc
Confidence 678999999999999999888742 12333334432 344 589999999999985554433 2222222111
Q ss_pred HHhhccCCcccccc-hHHH---HHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 192 IYHVETYDVTTIRA-STPM---FLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 192 i~~le~~~~~~i~~-~~~~---y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
-. +.. ..+. .... --+.+.+++.+..++++|.=+||=-
T Consensus 72 ~~----~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~ 113 (174)
T PF01507_consen 72 GW----PSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP 113 (174)
T ss_dssp HH----STT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT
T ss_pred cc----cch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh
Confidence 10 110 0000 0011 1234455667778999999998854
No 117
>PRK08557 hypothetical protein; Provisional
Probab=96.39 E-value=0.052 Score=57.05 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=43.7
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEE
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~ 178 (474)
..++.+.+|||.||++++.++.+.. .++..+++ |++-..-.++++++++.+|++.+.+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3468899999999999998887654 24555554 43322236789999999999988765
No 118
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.22 E-value=0.03 Score=57.81 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=59.1
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC-CCcH--HHHHHHH-HHhCCceEEEEeChhhhH
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDL--KYAKEVA-DYLGTVHHEFHFTVQDGI 185 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~-~~D~--~~A~~vA-~~lg~~h~~i~~~~~~~~ 185 (474)
..++-++||||+||-+-+.++.+.+ -+++..+...++ ..|. .-+...+ ..+...++.+.+..-++.
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~ 244 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFT 244 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchH
Confidence 4456799999999998887776643 466666654332 2222 2222233 334433333333333333
Q ss_pred HhHHHHHHhh-ccCCcccccchHHHHHHHH-HHHhCCCcEEEEcCch
Q 011948 186 DAIEEVIYHV-ETYDVTTIRASTPMFLMSR-KIKSLGVKMVISGEGS 230 (474)
Q Consensus 186 ~~l~~~i~~l-e~~~~~~i~~~~~~y~l~~-~a~~~G~~vvLsG~Gg 230 (474)
+...++.... +.|-... .-..||-++. .|++.|+..+.||+-=
T Consensus 245 ~v~~~i~~~~~~~y~~v~--~rR~M~riA~~iae~~g~~aIvtGEsL 289 (383)
T COG0301 245 EVQEEILEKVPESYRCVL--LKRMMYRIAEKLAEEFGAKAIVTGESL 289 (383)
T ss_pred HHHHHHHhhcCccceehH--HHHHHHHHHHHHHHHhCCeEEEecCcc
Confidence 4444444333 3343211 1134565554 5667899999999864
No 119
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.15 E-value=0.062 Score=51.67 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=41.6
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC-------CCcHHHHHHHHHHhCCceEEEEeCh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~-------~~D~~~A~~vA~~lg~~h~~i~~~~ 181 (474)
++.+++|||-||++-+..+.+.. .....++.-..+ ..+...++.+|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999998877665542 122333332211 3477899999999999998887543
No 120
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.019 Score=56.71 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=74.3
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHH
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 190 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~ 190 (474)
..+.++.|||||+|.|.+-+.++. ..+.+|....-...|.+.|++-|-.+|..--.+.=-.+++++ +
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqG----------yeViay~AnvGQ~edfe~ar~kAlk~Gakk~~~ed~~~eFve---d 72 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQG----------YEVIAYLANVGQKEDFEEARKKALKSGAKKVVVEDVREEFVE---D 72 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcC----------ceEEEeeccccchhhHHHHHHhhhhcCceEEEehhhhHHHHh---h
Confidence 456688999999999999998764 688999866544579999999999999875444322233332 2
Q ss_pred HHHh------h-c-cCCc-c-cccchHHHHHHHHHHHhCCCcEE---EEcCchhhhccCCchhhcCCC
Q 011948 191 VIYH------V-E-TYDV-T-TIRASTPMFLMSRKIKSLGVKMV---ISGEGSDEIFGGYLYFHKAPN 245 (474)
Q Consensus 191 ~i~~------l-e-~~~~-~-~i~~~~~~y~l~~~a~~~G~~vv---LsG~GgDElfgGY~~~~~~p~ 245 (474)
.++. + | .|-. + ..|..++. ...+.|++.|++.| -||-|-|.+-.-..+|...|.
T Consensus 73 fi~Pa~qs~a~YEd~YLLGTSlaRp~ia~-~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P~ 139 (412)
T KOG1706|consen 73 FIWPALQSSALYEDRYLLGTSLARPVIAK-AQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKPD 139 (412)
T ss_pred cchhhhhhcchhhceeeeccccccchhhh-hhhhHHhhcCceeeecccccCCCcceeeeeeeeccCCc
Confidence 2221 0 1 2211 1 11211211 12233555676655 489999998655555655553
No 121
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.04 E-value=0.045 Score=55.11 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=66.5
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC-CCCc-HHHHHHHHHHhCCceEEEEeChhhhHHhHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 189 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~-~~~D-~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~ 189 (474)
.++++.|||.||++++-++.+.+.+. ..++..+++... .-+| ..+..++++.+|++++.... ++.++
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~--- 107 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA--- 107 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH---
Confidence 45789999999999999999875321 135677776432 1244 67899999999998877643 22221
Q ss_pred HHHHhhccCCcc-cccch-HHHHHHHHHHHhCCCcEEEEcCchhh
Q 011948 190 EVIYHVETYDVT-TIRAS-TPMFLMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 190 ~~i~~le~~~~~-~i~~~-~~~y~l~~~a~~~G~~vvLsG~GgDE 232 (474)
. ....+... ...+. .=...|.+.+.+.|.+++++|.=-||
T Consensus 108 ~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 11111110 00011 11234556666678899999988887
No 122
>PRK13794 hypothetical protein; Provisional
Probab=96.00 E-value=0.066 Score=57.44 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=45.1
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEEe
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
..++.+.+|||.||++++.++.+... .++..+.+ |++-....++++++++++|++.+.+..
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~ 309 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKS 309 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEch
Confidence 35799999999999999988877642 34555554 443223467899999999999877643
No 123
>PRK13795 hypothetical protein; Provisional
Probab=95.95 E-value=0.033 Score=61.90 Aligned_cols=61 Identities=31% Similarity=0.406 Sum_probs=46.2
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEEeC
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFT 180 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~~~ 180 (474)
+.++.+.+|||.||++++.++.+... ++..+.+ |++-....++++++++++|++++.+...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~----------~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~ 305 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALK----------DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAG 305 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCC----------CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEccc
Confidence 45899999999999999999987652 3455544 4432335689999999999998877543
No 124
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.79 E-value=0.035 Score=44.57 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=24.9
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG 153 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig 153 (474)
+.+.+|||+||+.++.++.+.... +..+..++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~-------~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSG-------GPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhc-------CCCEEEEEeH
Confidence 358899999999999988876311 2456666665
No 125
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=94.45 E-value=0.35 Score=45.93 Aligned_cols=58 Identities=7% Similarity=0.097 Sum_probs=42.5
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC-CCCc-HHHHHHHHHHhCCceEEEE
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~-~~~D-~~~A~~vA~~lg~~h~~i~ 178 (474)
..+.+..|||.||++++-++.+.. +++..+.+... .-+| .++.+++++.+|+..+.+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~ 73 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYK 73 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 368999999999999999988765 34555655432 2344 4689999999998765554
No 126
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.2 Score=52.11 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=53.8
Q ss_pred HHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEEe
Q 011948 102 AVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 102 AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
-+++++. +..+-+++|||.|||+.++++.+.... .++++..+ |+-.-.|....++.-.+||++.+.+..
T Consensus 223 ~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 223 EIRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred HHHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeec
Confidence 3445554 677889999999999999999988742 46777775 454556777777777779999988876
Q ss_pred Ch
Q 011948 180 TV 181 (474)
Q Consensus 180 ~~ 181 (474)
+.
T Consensus 294 s~ 295 (552)
T KOG1622|consen 294 SE 295 (552)
T ss_pred hH
Confidence 54
No 127
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=94.21 E-value=0.5 Score=50.11 Aligned_cols=124 Identities=21% Similarity=0.190 Sum_probs=63.3
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC-CCCc-HH-------HHHHHHHHhCCceEEEEe
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LK-------YAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~-~~~D-~~-------~A~~vA~~lg~~h~~i~~ 179 (474)
.+.|+.+.+|||-||++++.++-+.+... +.....+.++.++...- +.|+ .. ..+..|+..|.+.....+
T Consensus 12 ~~~p~vV~fSGGKDSta~L~Lv~~Al~~l-p~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 12 DDIPWVVGYSGGKDSTAVLQLIWNALAAL-PAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred cCCceEEEeCCCHHHHHHHHHHHHHHHhc-cccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 57899999999999999998877654210 00000123444443211 2233 22 344566777777655555
Q ss_pred ChhhhHHhHHHHHHh-hccCCcccccchH------HH-HHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 180 TVQDGIDAIEEVIYH-VETYDVTTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 180 ~~~~~~~~l~~~i~~-le~~~~~~i~~~~------~~-y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
.+..-...+..++-. ...|. ...|.++ |+ -++.+.+++.|..++++|.=.||=.
T Consensus 91 ~P~~~~~Fwv~liGrG~P~P~-~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~ 152 (447)
T TIGR03183 91 TPEIKDTFWVNLIGKGYPAPR-QKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ 152 (447)
T ss_pred CCCcchHHHHHHhcCCCCCCC-CCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH
Confidence 443211223333321 11111 1223222 21 1233344456778899998888743
No 128
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=94.20 E-value=0.14 Score=55.66 Aligned_cols=68 Identities=21% Similarity=0.417 Sum_probs=58.4
Q ss_pred CcceEEEEEEEECCC-CEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCee
Q 011948 1 MLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 72 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~-~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~ 72 (474)
+|.|.||+++.|... +++++||- -.||..+.. +|..++||++-+++...+.+..|..|.+..+..++.
T Consensus 150 ~l~Gsyal~~~~~~~p~~i~~ar~---~sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v 218 (597)
T COG0449 150 RLEGSYALLCTHSDFPDELVAARK---GSPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGV 218 (597)
T ss_pred HhcceeEEEEEecCCCCeEEEEcC---CCCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcE
Confidence 589999999999877 78999998 589999986 678889999999999999999999999876654433
No 129
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=93.95 E-value=0.79 Score=44.21 Aligned_cols=64 Identities=5% Similarity=-0.008 Sum_probs=45.4
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCCceEEEEeChh
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHFTVQ 182 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~~h~~i~~~~~ 182 (474)
..++.+..|||.||.+++-++.+... +++..+.+. ..-..=.+++.++++++|...+.+...+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 34688999999999999999988752 245555553 32222368999999999976666555544
No 130
>PRK06850 hypothetical protein; Provisional
Probab=93.86 E-value=0.88 Score=48.97 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=68.6
Q ss_pred HHHHHHHHhhc-cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC-CCCCcH-HH-------HHHHH
Q 011948 98 AFENAVIKRLM-TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-EGSPDL-KY-------AKEVA 167 (474)
Q Consensus 98 ~L~~AV~~rl~-sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~-~~~~D~-~~-------A~~vA 167 (474)
.+.+.|+.... .+.|+.|.+|||-||++++.++-+...... ......+++.++... -+.|+. .| .+..|
T Consensus 21 ~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp-~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a 99 (507)
T PRK06850 21 ELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLP-PEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAA 99 (507)
T ss_pred HHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcc-hhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHH
Confidence 33455555443 478999999999999999988866542110 000012444444322 123432 23 34456
Q ss_pred HHhCCceEEEEeChhhhHHhHHHHHHh-hccCCcccccchH------HH-HHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 168 DYLGTVHHEFHFTVQDGIDAIEEVIYH-VETYDVTTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 168 ~~lg~~h~~i~~~~~~~~~~l~~~i~~-le~~~~~~i~~~~------~~-y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
+..|++.+...+++.-....+..++-. .-.|.. ..|.++ |+ -++-+.+++.|-.++++|.=.||=.
T Consensus 100 ~~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps~-~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~ 173 (507)
T PRK06850 100 KKQGLPITPHKLTPKINDTFWVNLIGKGYPAPRR-KFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA 173 (507)
T ss_pred HHcCCceEEEeeCCCcchhHHHHHhcCCCCCCCC-CCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH
Confidence 677887765555553211222333321 111211 223322 11 1222333455777889998888754
No 131
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=93.77 E-value=0.18 Score=46.04 Aligned_cols=62 Identities=23% Similarity=0.477 Sum_probs=45.0
Q ss_pred ceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc--------------------------cCcc
Q 011948 3 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD--------------------------CEHF 56 (474)
Q Consensus 3 ~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~--------------------------~~~I 56 (474)
+|+|.|.|=| +++++.+..|+-|.-|.|.... +..|+...+|-+-.. .+++
T Consensus 99 EGdfcffiE~-kng~L~l~Tds~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na 175 (201)
T PF09147_consen 99 EGDFCFFIED-KNGELTLITDSRGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNA 175 (201)
T ss_dssp -SSEEEEEEE-TTSEEEEEE-SSSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTE
T ss_pred cCceEEEEec-CCCcEEEEecCCCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccc
Confidence 6999999855 5799999999999999998763 578888777754321 2689
Q ss_pred eEeCCCcEEEe
Q 011948 57 EAFPPGHLYSS 67 (474)
Q Consensus 57 ~~lpPG~~l~~ 67 (474)
.++.||++-.+
T Consensus 176 ~RlkPGsin~l 186 (201)
T PF09147_consen 176 QRLKPGSINVL 186 (201)
T ss_dssp EEE-SSEEEEE
T ss_pred eecCCCceEEE
Confidence 99999998654
No 132
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.17 E-value=0.89 Score=44.85 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=43.8
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCCceEEEEe
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
+.++.+..|||.||++++.++.+... ++..+.+. +.=..-.+++.++++++|++..+...
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~~----------~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~ 100 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAFP----------DFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRP 100 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhcC----------CCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecC
Confidence 55679999999999999999998763 34455543 22112368999999999977665543
No 133
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=92.75 E-value=0.59 Score=47.16 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=39.2
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC--CcHHHHHHHHH
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 168 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~--~D~~~A~~vA~ 168 (474)
.-..|+|.+|||-||+++.-++++..++.+ ..+|..|.+.+++. --.++.+++-.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~-----~~~i~VlfiD~E~QYs~TidyV~em~~ 82 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENG-----RDKISVLFIDWEAQYSCTIDYVQEMRE 82 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhC-----CCceEEEEEcchhhhhhHHHHHHHHHh
Confidence 445789999999999999999988765442 13688888888753 24455555544
No 134
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=92.44 E-value=1.4 Score=42.02 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=40.6
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCccee-EEeecCCC-------CCcHHHHHHHHHHhCCceEEEEeCh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~-tftig~~~-------~~D~~~A~~vA~~lg~~h~~i~~~~ 181 (474)
.+.+++|||-||+.-+..+-+.. ..+. ..++-.++ .+-..++...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 36789999999977666655542 2332 23332222 2467899999999999987776655
No 135
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=91.42 E-value=0.74 Score=44.19 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=33.8
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcce-eEEeecCC--C-----CCcHHHHHHHHHHhCCceEEEEeC
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQL-HSFCVGLE--G-----SPDLKYAKEVADYLGTVHHEFHFT 180 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l-~tftig~~--~-----~~D~~~A~~vA~~lg~~h~~i~~~ 180 (474)
.+.++.|||-||++-+..+.+.. ++ ..+|+-.+ + ..-.+..+..|+.+|+++..+..+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~-----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH-----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT------------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC-----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 36789999999998776655542 22 22222111 1 123567888899999999988876
No 136
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=91.15 E-value=2.3 Score=40.94 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=38.0
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC-------CCcHHHHHHHHHHhCCceEEEEe
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~-------~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
+.++.|||-||+.-+..+.+. - ..+..+|+-..+ ....+..+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~---------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-H---------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-C---------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 568999999999877666554 2 122233322111 23568899999999999876543
No 137
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=89.26 E-value=0.34 Score=50.96 Aligned_cols=70 Identities=29% Similarity=0.363 Sum_probs=42.9
Q ss_pred CEEEecCCcccHHHHHHHHHHhh-------cccc--c----------cc--------ccCcceeEEeecCCCCC-c-HHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHL-------AGTK--A----------AR--------QWGTQLHSFCVGLEGSP-D-LKY 162 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~-------~~~~--~----------~~--------~~~~~l~tftig~~~~~-D-~~~ 162 (474)
-.-+.||||+|||++|++..... .+.+ . .+ ..+.-+.|.-.|.+++. | ..-
T Consensus 351 GfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~r 430 (706)
T KOG2303|consen 351 GFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRR 430 (706)
T ss_pred ceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHH
Confidence 35578999999999998764321 1111 0 00 00011233334555543 3 578
Q ss_pred HHHHHHHhCCceEEEEeCh
Q 011948 163 AKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 163 A~~vA~~lg~~h~~i~~~~ 181 (474)
|+++|+.+|.-|..+.++.
T Consensus 431 ak~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 431 AKELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHHhhcceeeeeeehH
Confidence 9999999999999888764
No 138
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=68.46 E-value=8.9 Score=38.02 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=29.9
Q ss_pred eEEEEEEEECCCCEEEEEecc----CCCceEE-------------E---EEecCceEEEecCccchhcccCcceEeCCCc
Q 011948 4 GMFSFVLLDTRDNSFIVARDA----IGITSLY-------------I---GWGLDGSIWISSELKGLNDDCEHFEAFPPGH 63 (474)
Q Consensus 4 G~FAf~i~D~~~~~l~laRD~----~G~kPLy-------------y---~~~~~g~~~faSeik~L~~~~~~I~~lpPG~ 63 (474)
|.+.|++.|. ..+++.|+. .-.++.| . ....+..+++||| .|.. -+.-..+|+|+
T Consensus 170 ~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSe--PLt~-~e~W~~vp~g~ 244 (271)
T PF13230_consen 170 GSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASE--PLTD-DEDWEPVPPGS 244 (271)
T ss_dssp EEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS-------SS--EE--SSE
T ss_pred eeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEec--cCCC-CCCeEEcCCCc
Confidence 7789999997 589999982 1112211 0 0112456788888 4443 25699999999
Q ss_pred EEEecCCeeE
Q 011948 64 LYSSKSGGLK 73 (474)
Q Consensus 64 ~l~~~~~~~~ 73 (474)
.+.+..|++.
T Consensus 245 ~l~~~~G~v~ 254 (271)
T PF13230_consen 245 LLVFRDGEVV 254 (271)
T ss_dssp EEE-------
T ss_pred EEEEeccccc
Confidence 9999887653
No 139
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=47.15 E-value=2e+02 Score=30.28 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceE
Q 011948 96 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH 175 (474)
Q Consensus 96 r~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~ 175 (474)
+..|++.+..-. ..+-++++|-|+=++..+ +..+.+. +..+.++. +.-..-..+.+++..++|.+-.
T Consensus 79 ~~~le~~iaal~--ga~~~l~fsSGmaA~~~a--l~~L~~~-------g~~iV~~~--~~Y~gT~~~l~~~~~~~gie~~ 145 (409)
T KOG0053|consen 79 RDVLESGIAALE--GAAHALLFSSGMAAITVA--LLHLLPA-------GDHIVATG--DVYGGTLRILRKFLPKFGGEGD 145 (409)
T ss_pred hHHHHHHHHHHh--CCceEEEecccHHHHHHH--HHHhcCC-------CCcEEEeC--CCcccHHHHHHHHHHHhCceee
Confidence 444555554422 345588999999444433 2223322 13444443 3324567888999999998877
Q ss_pred EEEeChh-hhHHhHHH-H-HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCC
Q 011948 176 EFHFTVQ-DGIDAIEE-V-IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (474)
Q Consensus 176 ~i~~~~~-~~~~~l~~-~-i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY 237 (474)
.+..+.- ++.+.+.+ + +-.+|+|..|..... -.-.+.+.|++.|+.|++ |+-|++.
T Consensus 146 ~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~-DI~~l~~la~~~g~~vvV-----DnTf~~p 204 (409)
T KOG0053|consen 146 FVDVDDLKKILKAIKENTKAVFLESPSNPLLKVP-DIEKLARLAHKYGFLVVV-----DNTFGSP 204 (409)
T ss_pred eechhhHHHHHHhhccCceEEEEECCCCCccccc-cHHHHHHHHhhCCCEEEE-----eCCcCcc
Confidence 7765432 22233332 1 113688876654321 123567888889999888 5666654
No 140
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=43.31 E-value=56 Score=30.42 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHhhcccccccccCcceeEEeecCC-CCCc-HHHHHHHHHHhCCceEEEEe
Q 011948 120 GLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 120 GLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~-~~~D-~~~A~~vA~~lg~~h~~i~~ 179 (474)
|+||.+++.++.+.. +++..+.+... .-+| .+++.++++.+|++.+.+..
T Consensus 2 ~~~s~Vll~L~~~~~----------~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 2 GAEDVVLVDLAAKVR----------PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred ChHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 789999999998876 34555555321 1233 57999999999998776653
No 141
>PLN02309 5'-adenylylsulfate reductase
Probab=42.62 E-value=1.2e+02 Score=32.50 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEE
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~ 178 (474)
.++++..|||-||. ++-++.+.. .++..|.+ |+.-..-.+++.++++++|++.+.+.
T Consensus 111 ~~ia~~~SG~ed~v-ll~l~~~~~----------~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~ 169 (457)
T PLN02309 111 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMF 169 (457)
T ss_pred CCEEEEecchHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 46888899777764 444665543 34555555 43322346899999999999877664
No 142
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=39.98 E-value=16 Score=18.80 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.8
Q ss_pred ccCCceeecccCCH
Q 011948 273 SAWGLEARVPFLDK 286 (474)
Q Consensus 273 ~a~glE~R~PfLD~ 286 (474)
|.|++.+|+|-|++
T Consensus 1 mthsmrlrfptlnq 14 (14)
T PF08057_consen 1 MTHSMRLRFPTLNQ 14 (14)
T ss_pred CccceeeeccccCC
Confidence 56788899998763
No 143
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=38.56 E-value=1.3e+02 Score=28.20 Aligned_cols=69 Identities=16% Similarity=0.053 Sum_probs=35.5
Q ss_pred HHHHHHHHHhh-c--cCCCEEEecCCcccHH-HH-----HHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHH
Q 011948 97 QAFENAVIKRL-M--TDVPFGVLLSGGLDSS-LV-----ASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVA 167 (474)
Q Consensus 97 ~~L~~AV~~rl-~--sd~pvgv~LSGGLDSS-~I-----aala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA 167 (474)
+.+..||++-- . ++..+.++||=|-+++ -| ++.+++. ..|+.|||+.- ++|...-+.+|
T Consensus 95 dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~-----------~gV~iytIgiG-~~d~~~l~~iA 162 (191)
T cd01455 95 EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALARE-----------PNVNAFVIFIG-SLSDEADQLQR 162 (191)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHh-----------CCCEEEEEEec-CCCHHHHHHHH
Confidence 55666665422 2 2456777877666532 22 2222221 34666666652 33445566677
Q ss_pred HHhCCceEEE
Q 011948 168 DYLGTVHHEF 177 (474)
Q Consensus 168 ~~lg~~h~~i 177 (474)
+.-|-.....
T Consensus 163 ~~tgG~~F~A 172 (191)
T cd01455 163 ELPAGKAFVC 172 (191)
T ss_pred hCCCCcEEEe
Confidence 7665554433
No 144
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=38.15 E-value=1.7e+02 Score=25.33 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC-CcHHHHHHHHHHh
Q 011948 94 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYL 170 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~-~D~~~A~~vA~~l 170 (474)
.+...+..+.+.--.. ....-+++|.|-|+......+..... ..+..|++++... ......+.+|+..
T Consensus 81 ~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~~---------~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 81 NLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSDIEAAKALKQ---------QGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp -HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHHHHHHHHHHC---------TTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcchhHHHHHHHH---------cCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 3455555555432221 34577899999987554444444332 3566666665432 3347888899988
Q ss_pred CCceEEEEeChhhhHHhHH
Q 011948 171 GTVHHEFHFTVQDGIDAIE 189 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~ 189 (474)
|-....+.-+.+++.+.+.
T Consensus 152 gG~~~~~~~~~~~l~~~~~ 170 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQ 170 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHh
Confidence 7665555335555544444
No 145
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=35.36 E-value=70 Score=38.09 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=37.0
Q ss_pred CEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCc---ceEeCCCcEEEec
Q 011948 16 NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEH---FEAFPPGHLYSSK 68 (474)
Q Consensus 16 ~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~---I~~lpPG~~l~~~ 68 (474)
+.+=..=||-|.||.-|+.+.|+.++.|||.-.+--..+. =-+|-||..+.++
T Consensus 422 ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 422 RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 4555666889999997767778999999997654211111 2368899987664
No 146
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=32.88 E-value=34 Score=33.01 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=29.1
Q ss_pred CCCEEEecCCcccHHHHHHHHH-----HhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHH
Q 011948 110 DVPFGVLLSGGLDSSLVASITA-----RHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADY 169 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~-----~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~ 169 (474)
..--|++||||.||..=.-+=. +..+++ ..=+..+.+||-+ ..+++++.+.
T Consensus 54 kGy~g~llSGGm~srg~VPl~kf~d~lK~lke~------~~l~inaHvGfvd---E~~~eklk~~ 109 (275)
T COG1856 54 KGYEGCLLSGGMDSRGKVPLWKFKDELKALKER------TGLLINAHVGFVD---ESDLEKLKEE 109 (275)
T ss_pred cCceeEEEeCCcCCCCCccHHHHHHHHHHHHHh------hCeEEEEEeeecc---HHHHHHHHHh
Confidence 3456999999999986443221 112211 0123566778754 4456666664
No 147
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=32.77 E-value=2.1e+02 Score=30.75 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCCCcHHHHHHHHHHhCCceEEEE
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~~D~~~A~~vA~~lg~~h~~i~ 178 (474)
.++.+..|||-||. ++-++.+.. .++..|++ |+.-..-.+++.++++++|++.+.+.
T Consensus 116 ~~iavasSG~edsv-Llhl~~~~~----------~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~ 174 (463)
T TIGR00424 116 NDIAIAFSGAEDVA-LIEYAHLTG----------RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMF 174 (463)
T ss_pred CCEEEEeccHHHHH-HHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 36889999887765 455666554 34555554 43322346899999999999877654
No 148
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=29.96 E-value=2.2e+02 Score=29.09 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEee--cCCCC-CcH-HHHHHHHHHhCCceEEEE
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGS-PDL-KYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tfti--g~~~~-~D~-~~A~~vA~~lg~~h~~i~ 178 (474)
...+++--|||-||++.|..+..+..+.+ .+.++...++ |..+. ++. ...++....+|++..++.
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~----~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs 119 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHD----YGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS 119 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcC----CCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec
Confidence 34488999999999999988776543211 1234444554 22232 343 444555667899988875
No 149
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=27.89 E-value=3.1e+02 Score=25.10 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhc--c--CCCEEEecCCcccHH--HHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHH
Q 011948 94 VLRQAFENAVIKRLM--T--DVPFGVLLSGGLDSS--LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVA 167 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~--s--d~pvgv~LSGGLDSS--~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA 167 (474)
.+...|..|.+.--. . ...+.+++|+|-|+. -+..++.+..+ ..+.-+++++- .|...-+++|
T Consensus 87 ~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~---------~~I~v~~IgiG--~~~~~L~~ia 155 (183)
T cd01453 87 SLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKK---------ENIRVSVIGLS--AEMHICKEIC 155 (183)
T ss_pred hHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHH---------cCcEEEEEEec--hHHHHHHHHH
Confidence 456666666543211 1 234778889887652 23333332221 24566666662 4566788999
Q ss_pred HHhCCceEEE
Q 011948 168 DYLGTVHHEF 177 (474)
Q Consensus 168 ~~lg~~h~~i 177 (474)
+.-|-.+...
T Consensus 156 ~~tgG~~~~~ 165 (183)
T cd01453 156 KATNGTYKVI 165 (183)
T ss_pred HHhCCeeEee
Confidence 9998877654
No 150
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.34 E-value=1.8e+02 Score=30.45 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceE
Q 011948 96 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH 175 (474)
Q Consensus 96 r~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~ 175 (474)
.+.|++.+...- ...-++++|.|+ ++|++.+....+. +..+......+. .-....+.....+|++.+
T Consensus 57 ~~~le~~la~Le--~g~~a~~~~SGm--aAi~~~l~~ll~~-------Gd~iv~~~~~Y~--~t~~~~~~~l~~~gv~v~ 123 (386)
T PF01053_consen 57 VRALEQRLAALE--GGEDALLFSSGM--AAISAALLALLKP-------GDHIVASDDLYG--GTYRLLEELLPRFGVEVT 123 (386)
T ss_dssp HHHHHHHHHHHH--T-SEEEEESSHH--HHHHHHHHHHS-T-------TBEEEEESSSSH--HHHHHHHHCHHHTTSEEE
T ss_pred HHHHHHHHHHhh--cccceeeccchH--HHHHHHHHhhccc-------CCceEecCCccC--cchhhhhhhhcccCcEEE
Confidence 344444444322 234578889888 5554444334432 234444332221 234556667777898876
Q ss_pred EEEeChhhhHHhHHHHHH------hhccCCcccccchHHHHHHHHHHHhCC-CcEEEEcC
Q 011948 176 EFHFTVQDGIDAIEEVIY------HVETYDVTTIRASTPMFLMSRKIKSLG-VKMVISGE 228 (474)
Q Consensus 176 ~i~~~~~~~~~~l~~~i~------~le~~~~~~i~~~~~~y~l~~~a~~~G-~~vvLsG~ 228 (474)
.+..+ + .+.+.+.+. .+|+|..++... ...-.+++.+++.| +.+++..-
T Consensus 124 ~~d~~--d-~~~l~~~l~~~t~~v~~EspsNP~l~v-~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 124 FVDPT--D-LEALEAALRPNTKLVFLESPSNPTLEV-PDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp EESTT--S-HHHHHHHHCTTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECT
T ss_pred EeCch--h-HHHHHhhccccceEEEEEcCCCccccc-ccHHHHHHHHHHhCCceEEeecc
Confidence 66442 2 233443332 358887665442 23446788899998 88887543
No 151
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.15 E-value=2.5e+02 Score=29.76 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEE
Q 011948 97 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 176 (474)
Q Consensus 97 ~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~ 176 (474)
+.|++.+..-.. .+-++.++.|. +.+.++++. ..++ +..|.+-...+.+ . ...........|++...
T Consensus 72 ~~le~~la~l~g--~~~~v~fsSG~-~Ai~~al~~-ll~~-------Gd~VI~~~~~y~~-t-~~~~~~~l~~~Gi~v~~ 138 (437)
T PRK05613 72 EALENRIASLEG--GVHAVAFASGQ-AAETAAILN-LAGA-------GDHIVTSPRLYGG-T-ETLFLVTLNRLGIEVTF 138 (437)
T ss_pred HHHHHHHHHHhC--CCeEEEeCCHH-HHHHHHHHH-hcCC-------CCEEEECCCccHH-H-HHHHHHHHHhcCeEEEE
Confidence 344444444332 24678888888 555554443 2221 1233322222211 1 22334456778888766
Q ss_pred EEeChhhhHHhHHHHHH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 011948 177 FHFTVQDGIDAIEEVIY------HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (474)
Q Consensus 177 i~~~~~~~~~~l~~~i~------~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~ 228 (474)
+. ++.+ .+.+.+.+. .+|++..++. ...++-.+++.+++.|+.++..+-
T Consensus 139 vd-~~~d-~e~l~~~l~~~tk~V~~e~~~Np~~-~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 139 VE-NPDD-PESWQAAVQPNTKAFFGETFANPQA-DVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred EC-CCCC-HHHHHHhCCccCeEEEEECCCCCCC-cccCHHHHHHHHHHcCCeEEEECC
Confidence 64 1211 222332221 1244432221 113455678888889988888655
No 152
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.04 E-value=3.4e+02 Score=28.55 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceE
Q 011948 96 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH 175 (474)
Q Consensus 96 r~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~ 175 (474)
++.|++++.. |. ...-++++|.|+ ++|.+..-...+. +..+..-.-.+ ..-..+...+.+.+|++..
T Consensus 65 ~~~lE~~~a~-LE-g~~~~~afsSGm--aAI~~~~l~ll~~-------GD~vl~~~~~Y--G~t~~~~~~~l~~~gi~~~ 131 (396)
T COG0626 65 RDALEEALAE-LE-GGEDAFAFSSGM--AAISTALLALLKA-------GDHVLLPDDLY--GGTYRLFEKILQKFGVEVT 131 (396)
T ss_pred HHHHHHHHHH-hh-CCCcEEEecCcH--HHHHHHHHHhcCC-------CCEEEecCCcc--chHHHHHHHHHHhcCeEEE
Confidence 3444444444 22 445689999999 4444433333321 12332222111 2345677888888898877
Q ss_pred EEEeChh-hhHHhHHH--H-HHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccC
Q 011948 176 EFHFTVQ-DGIDAIEE--V-IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 236 (474)
Q Consensus 176 ~i~~~~~-~~~~~l~~--~-i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgG 236 (474)
.+..+.. +..+.+.. . +-.+|+|..++.+.. -.-.+++.|++.|+.+++ |.-|++
T Consensus 132 ~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~-DI~~i~~~A~~~g~~vvV-----DNTfat 190 (396)
T COG0626 132 FVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVP-DIPAIARLAKAYGALVVV-----DNTFAT 190 (396)
T ss_pred EECCCChHHHHHHhcccCceEEEEeCCCCcccccc-cHHHHHHHHHhcCCEEEE-----ECCccc
Confidence 6554333 33333321 1 113688877655421 123578888888877777 455554
No 153
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=27.00 E-value=2.3e+02 Score=29.37 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=52.0
Q ss_pred HHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEE
Q 011948 99 FENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 99 L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~ 178 (474)
|++.+.+.... +-++.+++|.. .+.+++....++ +..+.+-...+.. -....+.+ ...|.+...+.
T Consensus 58 lE~~lA~l~g~--~~~l~~~sG~~--Ai~~~l~~ll~~-------GD~Vlv~~~~y~~--~~~~~~~~-~~~g~~v~~~~ 123 (385)
T PRK08574 58 LEEALAKLEGG--VDALAFNSGMA--AISTLFFSLLKA-------GDRVVLPMEAYGT--TLRLLKSL-EKFGVKVVLAY 123 (385)
T ss_pred HHHHHHHHhCC--CcEEEeCCHHH--HHHHHHHHHhCC-------CCEEEEcCCCchh--HHHHHHHh-hccCcEEEEEC
Confidence 44555554433 34577889973 333333333322 1233322222211 12233333 55677665555
Q ss_pred eChhhhHHhHHH----HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 011948 179 FTVQDGIDAIEE----VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVIS 226 (474)
Q Consensus 179 ~~~~~~~~~l~~----~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLs 226 (474)
.+.+++.+.+.+ +++ +|.+..++.. ....-.+.+.+++.|+.+++.
T Consensus 124 ~d~~~l~~~i~~~~tklV~-ie~p~NPtG~-v~dl~~I~~la~~~gi~livD 173 (385)
T PRK08574 124 PSTEDIIEAIKEGRTKLVF-IETMTNPTLK-VIDVPEVAKAAKELGAILVVD 173 (385)
T ss_pred CCHHHHHHhcCccCceEEE-EECCCCCCCE-ecCHHHHHHHHHHcCCEEEEE
Confidence 554444333322 122 3555443321 122335677788888888764
No 154
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=26.67 E-value=3.7e+02 Score=24.95 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcH------HHHHHHHHHhCCceEEEEeChhhhHHhHHHHHH
Q 011948 120 GLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL------KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIY 193 (474)
Q Consensus 120 GLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~------~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~ 193 (474)
|-||+.+.-.+.... ..+..|-.+..=.|.. ...+++|+.+|++..+-..+++++++. +.
T Consensus 8 aPCs~~~~~~L~~~g----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~----v~ 73 (176)
T PF02677_consen 8 APCSTYPLERLREEG----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRA----VK 73 (176)
T ss_pred ccccHHHHHHHHHCC----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHH----Hh
Confidence 578888877776552 3566665543323433 446678999999887777766665543 33
Q ss_pred hhccCCcccccchH----HHHHHHHHHHhCCCcEEEE
Q 011948 194 HVETYDVTTIRAST----PMFLMSRKIKSLGVKMVIS 226 (474)
Q Consensus 194 ~le~~~~~~i~~~~----~~y~l~~~a~~~G~~vvLs 226 (474)
.+|.-.....|... -+-..++.|++.|.+..=|
T Consensus 74 ~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 74 GLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred hCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 34322111234332 1233567778877654433
No 155
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=26.47 E-value=4e+02 Score=26.16 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=44.7
Q ss_pred CCCEEEecCCcccHHH---HHHHHHHhhcccccccccCcceeEEeecCCCC-------------CcHHHHHHHHHHhCCc
Q 011948 110 DVPFGVLLSGGLDSSL---VASITARHLAGTKAARQWGTQLHSFCVGLEGS-------------PDLKYAKEVADYLGTV 173 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~---Iaala~~~~~~~~~~~~~~~~l~tftig~~~~-------------~D~~~A~~vA~~lg~~ 173 (474)
..+.-++||.|.|+.. +..++....+ .++..|++++.+. .+...-+++|+..|-.
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~---------~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQR---------ADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHH---------cCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 3567899999999753 2223322221 3577788876421 2456678899988876
Q ss_pred eEEEEeChhhhHHhHHHHHHh
Q 011948 174 HHEFHFTVQDGIDAIEEVIYH 194 (474)
Q Consensus 174 h~~i~~~~~~~~~~l~~~i~~ 194 (474)
.... +..++.+.+.++...
T Consensus 235 ~~~~--~~~~l~~~f~~i~~~ 253 (296)
T TIGR03436 235 AFYV--NSNDLDGAFAQIAEE 253 (296)
T ss_pred Eecc--cCccHHHHHHHHHHH
Confidence 5333 555665666655543
No 156
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=7.6e+02 Score=26.31 Aligned_cols=119 Identities=24% Similarity=0.282 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHHHhhccCCCEEEecCCc---c-cHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHH
Q 011948 91 DPLVLRQAFENAVIKRLMTDVPFGVLLSGG---L-DSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEV 166 (474)
Q Consensus 91 ~~~~lr~~L~~AV~~rl~sd~pvgv~LSGG---L-DSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~v 166 (474)
..++|...|---+ +|=++.|=|| + -|+++.-++++.... . ....+.-++ -....+.-
T Consensus 78 g~~EldRVLGGG~-------V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--------~--~vLYVsGEE--S~~QiklR 138 (456)
T COG1066 78 GIEELDRVLGGGL-------VPGSVILIGGDPGIGKSTLLLQVAARLAKR--------G--KVLYVSGEE--SLQQIKLR 138 (456)
T ss_pred ChHHHHhhhcCCc-------ccccEEEEccCCCCCHHHHHHHHHHHHHhc--------C--cEEEEeCCc--CHHHHHHH
Confidence 3456666653222 3333444443 2 477777777776531 2 223222122 23455667
Q ss_pred HHHhCCceEEEEeChhhhHHhHHHHHHhhccCCc--------------ccccchHH-----HHHHHHHHHhCCCcEEEEc
Q 011948 167 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV--------------TTIRASTP-----MFLMSRKIKSLGVKMVISG 227 (474)
Q Consensus 167 A~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~--------------~~i~~~~~-----~y~l~~~a~~~G~~vvLsG 227 (474)
|+.||+.+..+.+-.+.-++.+.+.+.. +.|+. +....++. ...|.+.|++.|+.++|.|
T Consensus 139 A~RL~~~~~~l~l~aEt~~e~I~~~l~~-~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 139 ADRLGLPTNNLYLLAETNLEDIIAELEQ-EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred HHHhCCCccceEEehhcCHHHHHHHHHh-cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999987777766555433333332221 11221 11111222 3467889999999999988
Q ss_pred Cc
Q 011948 228 EG 229 (474)
Q Consensus 228 ~G 229 (474)
+=
T Consensus 218 HV 219 (456)
T COG1066 218 HV 219 (456)
T ss_pred EE
Confidence 64
No 157
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=24.18 E-value=6.6e+02 Score=25.64 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEE
Q 011948 97 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 176 (474)
Q Consensus 97 ~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~ 176 (474)
+.|++.+.+.... +.++.++||.. .+.+++. .... +..+..-.-.+.+ -....+..+..+|.+...
T Consensus 55 ~~le~~la~l~g~--~~~~~~~sG~~--ai~~~~~-ll~~-------Gd~Vl~~~~~y~~--t~~~~~~~~~~~G~~v~~ 120 (366)
T PRK08247 55 GVLEQAIADLEGG--DQGFACSSGMA--AIQLVMS-LFRS-------GDELIVSSDLYGG--TYRLFEEHWKKWNVRFVY 120 (366)
T ss_pred HHHHHHHHHHhCC--CcEEEEcCHHH--HHHHHHH-HhCC-------CCEEEEecCCcCc--HHHHHHHHhhccCceEEE
Confidence 3444555554433 34688999964 4443333 3322 2334433322221 122334556678887766
Q ss_pred EEeChhhhHHhHHHHHH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 011948 177 FHFTVQDGIDAIEEVIY------HVETYDVTTIRASTPMFLMSRKIKSLGVKMVIS 226 (474)
Q Consensus 177 i~~~~~~~~~~l~~~i~------~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLs 226 (474)
+... + ++.+.+.+. .+|+|..++.. ....-.+.+.+++.|+.++..
T Consensus 121 vd~~--d-~~~l~~~i~~~tklv~le~P~NP~~~-~~dl~~I~~la~~~g~~lIvD 172 (366)
T PRK08247 121 VNTA--S-LKAIEQAITPNTKAIFIETPTNPLMQ-ETDIAAIAKIAKKHGLLLIVD 172 (366)
T ss_pred ECCC--C-HHHHHHhcccCceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEE
Confidence 6543 1 122333221 23556554322 123445777888888877764
No 158
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=23.96 E-value=3.6e+02 Score=27.78 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEE
Q 011948 97 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 176 (474)
Q Consensus 97 ~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~ 176 (474)
+.|++.+.+.... +-++.+++|.. .+.+++. ..++ +..+.+-...+. .=....+..+...|.+...
T Consensus 50 ~~le~~la~l~g~--~~~l~~~sG~~--al~~~l~-ll~~-------Gd~Vl~~~~~y~--~~~~~~~~~~~~~G~~v~~ 115 (378)
T TIGR01329 50 TALESLLAKLDKA--DRAFAFSSGMA--ALDVITR-LLNN-------GDEIIAGDDLYG--GTDRLLTQVVPRSGVVVVH 115 (378)
T ss_pred HHHHHHHHHHhCC--CcEEEECCHHH--HHHHHHH-HhCC-------CCEEEEcCCCch--HHHHHHHHHHHHcCcEEEE
Confidence 3444555544433 45778899973 4444443 4432 123333222221 1123345567788998877
Q ss_pred EEeC-hhhhHHhHHHHH--HhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 011948 177 FHFT-VQDGIDAIEEVI--YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (474)
Q Consensus 177 i~~~-~~~~~~~l~~~i--~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~ 228 (474)
+... .+++.+.+..-. -.+|++..++.. ....-.+++.+++.|+.+++.+-
T Consensus 116 vd~~d~~~le~~i~~~tklv~le~psnptg~-v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 116 VDTTDLDKVKAALGPKTKLVLLESPTNPLQK-IVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred eCCCCHHHHHHhcCcCceEEEEECCCCCCCe-eecHHHHHHHHHHcCCEEEEECC
Confidence 7653 222222221100 113444433221 12344577888888988887653
No 159
>PRK07582 cystathionine gamma-lyase; Validated
Probab=23.38 E-value=2.4e+02 Score=29.01 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=53.2
Q ss_pred EEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHH--
Q 011948 113 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE-- 190 (474)
Q Consensus 113 vgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~-- 190 (474)
-.+.+++|.+ .+.+++....++ +..+.+..-++. .-..+++.....+|.+...+..+... ....++
T Consensus 67 ~~v~~~sG~~--Ai~~~l~all~~-------Gd~Vl~~~~~y~--~~~~~~~~~l~~~G~~v~~v~~~~~~-~~~~~~t~ 134 (366)
T PRK07582 67 EALVFPSGMA--AITAVLRALLRP-------GDTVVVPADGYY--QVRALAREYLAPLGVTVREAPTAGMA-EAALAGAD 134 (366)
T ss_pred CEEEECCHHH--HHHHHHHHhcCC-------CCEEEEeCCCcH--hHHHHHHHHHhcCeEEEEEECCCChH-HHhccCce
Confidence 4678889974 344333333332 234444332221 22345556667788877776654321 111111
Q ss_pred HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 011948 191 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (474)
Q Consensus 191 ~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~ 228 (474)
+++ +|+|..++... ...-.+.+.+++.|+.+++.+-
T Consensus 135 lV~-le~p~NPtg~v-~di~~I~~~a~~~g~~lvVD~t 170 (366)
T PRK07582 135 LVL-AETPSNPGLDV-CDLAALAAAAHAAGALLVVDNT 170 (366)
T ss_pred EEE-EECCCCCCCCc-cCHHHHHHHHHHcCCEEEEECC
Confidence 222 46666554321 2344577778888888888663
No 160
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=22.42 E-value=4.5e+02 Score=27.47 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=55.5
Q ss_pred HHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEE
Q 011948 98 AFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEF 177 (474)
Q Consensus 98 ~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i 177 (474)
.|++.+..... .+-++.+|+|. .+|..++...... +..+...+-.+. .-....+.+++..|.+...+
T Consensus 64 ~Le~~lA~l~g--~~~~v~~~sG~--~Ai~~~l~all~p-------GD~Vvv~~p~Y~--~t~~~~~~~~~~~g~~v~~v 130 (405)
T PRK08776 64 LLGEALAELEG--GAGGVITATGM--GAINLVLNALLQP-------GDTLVVPHDAYG--GSWRLFNALAKKGHFALITA 130 (405)
T ss_pred HHHHHHHHHhC--CCceEEEcCHH--HHHHHHHHHHhCC-------CCEEEEccCCch--HHHHHHHHHHHhcCcEEEEE
Confidence 34444554333 24578899994 5555444434332 233433222221 11222345566677776665
Q ss_pred EeC-hhhhHHhHHH---HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCc
Q 011948 178 HFT-VQDGIDAIEE---VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (474)
Q Consensus 178 ~~~-~~~~~~~l~~---~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~G 229 (474)
... .+++.+.+.+ ++ .++.|..++... ...-.+.+.+++.|+.++...--
T Consensus 131 ~~~d~~~l~~~i~~~tklV-~l~~P~NPtG~v-~dl~~I~~la~~~gi~vIvD~a~ 184 (405)
T PRK08776 131 DLTDPRSLADALAQSPKLV-LIETPSNPLLRI-TDLRFVIEAAHKVGALTVVDNTF 184 (405)
T ss_pred CCCCHHHHHHhcCcCCeEE-EEECCCCCCCcc-CCHHHHHHHHHHcCCEEEEECCC
Confidence 432 2222222211 11 235554443221 22345677788888877775443
No 161
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.52 E-value=4.6e+02 Score=26.75 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEE
Q 011948 97 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 176 (474)
Q Consensus 97 ~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~ 176 (474)
+.|++.+.+.... +-++.+|+|. +.+..++....++ +..+.+-...+. .-....+.++...|.+...
T Consensus 43 ~~le~~la~l~g~--~~a~~~~sG~--~Ai~~~l~~l~~~-------gd~Vl~~~~~y~--~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 43 DALEKKLAALEGG--EAALAFSSGM--AAISTVLLALLKA-------GDHVVASDDLYG--GTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred HHHHHHHHHHHCC--CCEEEEcCHH--HHHHHHHHHHcCC-------CCEEEECCCCcc--hHHHHHHHHHhhcCeEEEE
Confidence 3444444544433 3468889996 4444333333322 123322222221 1223344556677877666
Q ss_pred EEeChhhhHHhHHHHHH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEcC
Q 011948 177 FHFTVQDGIDAIEEVIY------HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (474)
Q Consensus 177 i~~~~~~~~~~l~~~i~------~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~ 228 (474)
+..+. ++.+.+.+. .+|++..++.. ..+.-.+.+.+++.|+.+++.+-
T Consensus 110 v~~~d---~~~l~~~i~~~~~~v~~e~~~np~g~-~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 110 VDPDD---PEALEAAIKPETKLVYVESPTNPTLK-VVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred eCCCC---HHHHHHhcCCCCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECC
Confidence 55432 223333221 13544433221 12234577888888999888654
No 162
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=21.44 E-value=6.7e+02 Score=25.31 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhccCCCEE-EecCCcccHHHHHHHHHHh---hcccccccccCcceeEEeecCCCCCcHHHHHHHHH
Q 011948 93 LVLRQAFENAVIKRLMTDVPFG-VLLSGGLDSSLVASITARH---LAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVAD 168 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvg-v~LSGGLDSS~Iaala~~~---~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~ 168 (474)
.++.+..++.+.+-+..+.+-. ++.+|+-. .+-.++... ..+ +..+.+.+.+++ ......+.+++
T Consensus 42 ~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~--a~~~~~~~l~~~~~~-------g~~vl~~~~~~~--s~~~~~~~~~~ 110 (371)
T PF00266_consen 42 AEILEEAREALAKLLGAPPDEEVVFTSNGTE--ALNAVASSLLNPLKP-------GDEVLVTSNEHP--SNRYPWEEIAK 110 (371)
T ss_dssp HHHHHHHHHHHHHHHTSSTTEEEEEESSHHH--HHHHHHHHHHHHGTT-------TCEEEEEESSHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCccccccccccccch--hhhhhhhcccccccc-------cccccccccccc--ccccccccccc
Confidence 4455566666777666654234 44555533 444444433 221 245555554432 35556778888
Q ss_pred HhCCceEEEEeChhhh--HHhHHHHHHhhccCCc---ccccc----hHHHHHHHHHHHhCCCcEEEEcCch
Q 011948 169 YLGTVHHEFHFTVQDG--IDAIEEVIYHVETYDV---TTIRA----STPMFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 169 ~lg~~h~~i~~~~~~~--~~~l~~~i~~le~~~~---~~i~~----~~~~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
..|.+...+..+.... ++.+.+.+. +.... +.+.+ ..+.-.+++.+++.|+-+++.|--+
T Consensus 111 ~~g~~v~~i~~~~~~~~~~~~~~~~l~--~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~ 179 (371)
T PF00266_consen 111 RKGAEVRVIPADPGGSLDLEDLEEALN--PDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQS 179 (371)
T ss_dssp HTTEEEEEEEEGTTSSCSHHHHHHHHH--TTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTT
T ss_pred cchhhhccccccccchhhhhhhhhhhc--cccceEEeecccccccEEeeeceehhhhhccCCceeEechhc
Confidence 9999988888754332 233444432 11111 11111 1245567888888899999887644
No 163
>PRK05967 cystathionine beta-lyase; Provisional
Probab=21.36 E-value=6.1e+02 Score=26.52 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=55.5
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 191 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~ 191 (474)
+-++++|.|. +.+.+++....++ +..+....-++. .-....+.+++.+|++...+..+.. +.+.+.
T Consensus 80 ~~~v~~sSG~--aAi~~~l~all~~-------GD~Vlv~~~~Y~--~~~~l~~~~l~~~Gi~v~~vd~~~~---e~l~~a 145 (395)
T PRK05967 80 AGTILVPSGL--AAVTVPFLGFLSP-------GDHALIVDSVYY--PTRHFCDTMLKRLGVEVEYYDPEIG---AGIAKL 145 (395)
T ss_pred CCEEEECcHH--HHHHHHHHHhcCC-------CCEEEEccCCcH--HHHHHHHHHHHhcCeEEEEeCCCCH---HHHHHh
Confidence 3467888885 5555444434432 234444332222 2344566788889998777654422 233333
Q ss_pred HH------hhccCCcccccchHHHHHHHHHHHhCCCcEEEEc
Q 011948 192 IY------HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (474)
Q Consensus 192 i~------~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG 227 (474)
+. .+|+|..++.. -...-.+++.+++.|+-++...
T Consensus 146 l~~~TklV~lesPsNP~l~-v~dl~~I~~la~~~g~~vvVD~ 186 (395)
T PRK05967 146 MRPNTKVVHTEAPGSNTFE-MQDIPAIAEAAHRHGAIVMMDN 186 (395)
T ss_pred cCcCceEEEEECCCCCCCc-HHHHHHHHHHHHHhCCEEEEEC
Confidence 32 24666554332 2345568888888898777643
No 164
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=21.13 E-value=8e+02 Score=24.17 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhccCCC-EE-EecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhC
Q 011948 94 VLRQAFENAVIKRLMTDVP-FG-VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 171 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~p-vg-v~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg 171 (474)
.+.+.+++.+.+.+..+.. +. ++.+|| |..+.+++....... ..+...+-+.- .. . ...+++.+|
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~g--t~~l~~~~~~~~~~~-------~~vi~~~~~~~--~~-~-~~~~a~~~g 97 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSG--TFAVEATIGSLVPRD-------GKLLVLINGAY--GE-R-LAKICEYLG 97 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCc--HHHHHHHHHhccCCC-------CeEEEECCCch--hh-H-HHHHHHHcC
Confidence 4555566666666665432 33 456677 445554454443211 22222222211 11 1 245678899
Q ss_pred CceEEEEeChhhh--HHhHHHHHHhhccC---Cccccc----chHHHHHHHHHHHhCCCcEEEEc
Q 011948 172 TVHHEFHFTVQDG--IDAIEEVIYHVETY---DVTTIR----ASTPMFLMSRKIKSLGVKMVISG 227 (474)
Q Consensus 172 ~~h~~i~~~~~~~--~~~l~~~i~~le~~---~~~~i~----~~~~~y~l~~~a~~~G~~vvLsG 227 (474)
.++..+.++.... .+.+.+.+...... ..+... ...+.-.+.+.+++.|+-+++.+
T Consensus 98 ~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~ 162 (355)
T TIGR03301 98 IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA 162 (355)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe
Confidence 9988887643211 23444433210000 000000 11334457777888888888874
No 165
>PRK05968 hypothetical protein; Provisional
Probab=20.91 E-value=7.7e+02 Score=25.46 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEE
Q 011948 98 AFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEF 177 (474)
Q Consensus 98 ~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i 177 (474)
.|++.+.+.... +-++.+++|. +.+.+++.+ ..++ +..+.+....+. .-.......+...|.+.+.+
T Consensus 67 ~le~~lA~l~g~--~~av~~~sG~-~Ai~~al~a-l~~~-------Gd~Vl~~~~~y~--~t~~~~~~~~~~~G~~v~~v 133 (389)
T PRK05968 67 AFEEMLAKLEGA--EDARGFASGM-AAISSTVLS-FVEP-------GDRIVAVRHVYP--DAFRLFETILKRMGVEVDYV 133 (389)
T ss_pred HHHHHHHHHhCC--CcEEEECCHH-HHHHHHHHH-HhCC-------CCEEEEeCCCch--HHHHHHHHHHHHcCceEEEe
Confidence 344455554433 3457778887 333333333 3322 234444332221 11223345667788877666
Q ss_pred EeC-hhhhHHhHHH--HHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCch
Q 011948 178 HFT-VQDGIDAIEE--VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 178 ~~~-~~~~~~~l~~--~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
... .+++.+.+++ ++ .+|++..+... ...+-.+++.+++.|+.+++.+--+
T Consensus 134 d~~d~~~l~~~i~~tklV-~ie~pt~~~~~-~~dl~~i~~la~~~gi~vivD~a~a 187 (389)
T PRK05968 134 DGRDEEAVAKALPGAKLL-YLESPTSWVFE-LQDVAALAALAKRHGVVTMIDNSWA 187 (389)
T ss_pred CCCCHHHHHHhcccCCEE-EEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 543 2222222211 11 12333322211 1234457788888899999877543
Done!