Query 011948
Match_columns 474
No_of_seqs 406 out of 2357
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 1.3E-95 5E-100 785.2 35.8 432 1-439 116-552 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 7E-68 2.4E-72 565.1 30.5 332 1-365 116-472 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 3E-67 1E-71 559.3 26.5 354 1-394 99-485 (503)
4 1ao0_A Glutamine phosphoribosy 99.5 1.7E-13 5.8E-18 144.0 12.4 115 1-118 153-283 (459)
5 1xff_A D-fructose-6-, glucosam 99.2 3.4E-11 1.2E-15 115.8 9.1 70 1-74 151-221 (240)
6 2e18_A NH(3)-dependent NAD(+) 99.2 4.6E-11 1.6E-15 115.9 8.1 132 92-238 6-140 (257)
7 1kqp_A NAD+ synthase, NH(3)-de 99.1 1E-10 3.5E-15 114.5 10.0 142 89-238 19-168 (271)
8 3bl5_A Queuosine biosynthesis 99.1 2E-10 7E-15 108.0 10.6 119 109-238 2-130 (219)
9 1xng_A NH(3)-dependent NAD(+) 99.1 1.1E-10 3.9E-15 113.9 8.8 130 92-238 9-143 (268)
10 3sdb_A Glutamine-dependent NAD 99.1 5.2E-11 1.8E-15 130.6 5.0 302 93-430 342-668 (680)
11 3n05_A NH(3)-dependent NAD(+) 99.0 7.4E-10 2.5E-14 119.8 9.9 135 91-239 305-445 (590)
12 1ecf_A Glutamine phosphoribosy 99.0 6.8E-10 2.3E-14 117.9 8.0 68 1-69 162-234 (504)
13 3k32_A Uncharacterized protein 99.0 2.9E-09 9.8E-14 99.7 10.9 111 109-235 5-116 (203)
14 2bpl_A Glucosamine--fructose-6 98.8 4.3E-09 1.5E-13 114.2 8.3 68 1-72 151-219 (608)
15 3fiu_A NH(3)-dependent NAD(+) 98.8 1.4E-08 4.7E-13 98.1 10.8 134 90-238 11-153 (249)
16 3p52_A NH(3)-dependent NAD(+) 98.8 5.4E-09 1.8E-13 100.9 7.3 128 93-238 11-144 (249)
17 1wxi_A NH(3)-dependent NAD(+) 98.8 2.7E-08 9.2E-13 97.4 11.4 143 92-238 23-171 (275)
18 2pg3_A Queuosine biosynthesis 98.8 3.2E-08 1.1E-12 94.1 11.3 116 112-238 4-133 (232)
19 2nz2_A Argininosuccinate synth 98.6 1.7E-07 5.8E-12 96.7 11.8 110 109-230 4-121 (413)
20 2dpl_A GMP synthetase, GMP syn 98.6 2.3E-07 8E-12 92.2 11.6 125 94-233 5-133 (308)
21 1kor_A Argininosuccinate synth 98.6 3.4E-07 1.2E-11 94.1 12.4 109 112-231 2-118 (400)
22 1vl2_A Argininosuccinate synth 98.5 2.6E-07 9E-12 94.9 10.8 108 111-230 15-130 (421)
23 3mdn_A Glutamine aminotransfer 98.5 7E-08 2.4E-12 94.4 6.0 65 6-74 187-254 (274)
24 1wy5_A TILS, hypothetical UPF0 98.5 6.6E-07 2.3E-11 89.2 12.5 126 93-233 5-138 (317)
25 2hma_A Probable tRNA (5-methyl 98.5 2.1E-07 7.1E-12 95.1 8.7 114 110-234 9-137 (376)
26 3q4g_A NH(3)-dependent NAD(+) 98.3 1E-06 3.4E-11 86.2 8.9 87 92-180 24-112 (279)
27 2der_A TRNA-specific 2-thiouri 98.3 1.2E-06 4.1E-11 89.5 9.2 112 110-233 17-145 (380)
28 1k92_A Argininosuccinate synth 98.3 1.9E-06 6.6E-11 89.4 9.8 111 107-229 7-130 (455)
29 3tqi_A GMP synthase [glutamine 98.2 3.4E-06 1.2E-10 89.9 9.0 123 94-234 215-344 (527)
30 3dpi_A NAD+ synthetase; ssgcid 98.2 1.9E-06 6.3E-11 84.5 6.4 129 101-238 35-180 (285)
31 1gpm_A GMP synthetase, XMP ami 98.1 9.9E-06 3.4E-10 86.2 11.6 123 93-230 211-338 (525)
32 3a2k_A TRNA(Ile)-lysidine synt 98.1 1.7E-05 5.9E-10 83.1 11.8 120 99-233 5-132 (464)
33 2ywb_A GMP synthase [glutamine 98.1 2.8E-05 9.6E-10 82.3 13.4 124 94-233 194-321 (503)
34 3ilv_A Glutamine-dependent NAD 98.0 2.4E-05 8.3E-10 85.1 11.6 90 92-181 283-407 (634)
35 1sur_A PAPS reductase; assimil 97.9 4.6E-05 1.6E-09 71.3 10.5 109 111-233 45-160 (215)
36 4f4h_A Glutamine dependent NAD 97.9 9.1E-05 3.1E-09 79.4 13.6 138 92-240 280-426 (565)
37 2vxo_A GMP synthase [glutamine 97.8 4E-05 1.4E-09 84.0 10.1 80 93-181 224-305 (697)
38 2c5s_A THII, probable thiamine 97.8 3.4E-05 1.2E-09 79.6 8.5 106 112-233 189-303 (413)
39 3uow_A GMP synthetase; structu 97.8 0.00011 3.9E-09 78.5 12.7 79 93-181 239-321 (556)
40 1ni5_A Putative cell cycle pro 97.7 0.00017 5.8E-09 74.9 11.8 112 103-233 6-121 (433)
41 2o8v_A Phosphoadenosine phosph 97.5 0.00042 1.5E-08 66.5 9.7 109 111-233 46-161 (252)
42 3rjz_A N-type ATP pyrophosphat 97.5 0.0002 6.8E-09 68.2 7.2 60 112-181 6-73 (237)
43 1zun_A Sulfate adenylyltransfe 97.4 0.00052 1.8E-08 68.4 10.6 110 111-234 47-160 (325)
44 1ea0_A Glutamate synthase [NAD 97.2 0.00029 9.9E-09 81.7 6.8 66 1-68 326-394 (1479)
45 2oq2_A Phosphoadenosine phosph 97.2 0.00073 2.5E-08 65.2 8.3 115 111-233 42-164 (261)
46 1vbk_A Hypothetical protein PH 97.2 0.00056 1.9E-08 67.7 7.6 80 111-232 180-267 (307)
47 1ofd_A Ferredoxin-dependent gl 97.2 0.00047 1.6E-08 80.2 7.8 66 1-68 325-393 (1520)
48 1te5_A Conserved hypothetical 96.9 0.00097 3.3E-08 64.2 5.4 65 4-73 168-252 (257)
49 2wsi_A FAD synthetase; transfe 95.7 0.02 6.7E-07 56.5 7.5 69 111-179 54-136 (306)
50 2goy_A Adenosine phosphosulfat 95.4 0.051 1.8E-06 52.5 9.1 59 111-180 55-115 (275)
51 3fwk_A FMN adenylyltransferase 89.9 0.58 2E-05 45.8 7.0 66 112-177 60-139 (308)
52 3f9t_A TDC, L-tyrosine decarbo 28.0 3.8E+02 0.013 25.1 11.6 128 93-227 68-208 (397)
53 3ibs_A Conserved hypothetical 21.1 1.8E+02 0.0061 25.3 6.5 74 95-177 94-195 (218)
54 1hle_B Horse leukocyte elastas 20.8 1.1E+02 0.0039 18.5 3.5 19 3-21 7-26 (31)
55 2xn6_B Thyroxine-binding globu 20.5 1.1E+02 0.0038 19.1 3.5 19 3-21 8-27 (35)
56 2h4p_B MENT, heterochromatin-a 20.3 1.2E+02 0.0039 18.9 3.5 15 3-17 8-22 (34)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=1.3e-95 Score=785.25 Aligned_cols=432 Identities=58% Similarity=1.003 Sum_probs=358.5
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEEeeCCCC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTW 80 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~y~~p~~ 80 (474)
+|+|||||++||.++++++++||++|+|||||+...++.++||||+++|...+++|+.|||||++.+.+|+.++||++.|
T Consensus 116 ~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~ 195 (553)
T 1ct9_A 116 DLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDW 195 (553)
T ss_dssp GCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGG
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCc
Confidence 58999999999998999999999999999999984467899999999999999999999999999887778889999876
Q ss_pred ccC-CCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhccccc----ccccCcceeEEeecCC
Q 011948 81 YSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKA----ARQWGTQLHSFCVGLE 155 (474)
Q Consensus 81 ~~~-~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~----~~~~~~~l~tftig~~ 155 (474)
... ..++.++.+++|+++|++||++|+++|+|+|++||||+|||+|++++++...+... ..++.++++|||++++
T Consensus 196 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~ 275 (553)
T 1ct9_A 196 FDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP 275 (553)
T ss_dssp GSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC
Confidence 542 23455778999999999999999999999999999999999999999987642100 0001124899999999
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhhcc
Q 011948 156 GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (474)
Q Consensus 156 ~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfg 235 (474)
+++|..+|+++|+++|++||++.++.+++++.++++++++|+++++++++++++|++++.+++.|++|+|||+||||+||
T Consensus 276 ~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfg 355 (553)
T 1ct9_A 276 GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFG 355 (553)
T ss_dssp TCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHcCCeEEEECCCchhccc
Confidence 88999999999999999999999999999999999999999988777777889999999999999999999999999999
Q ss_pred CCchhhcCCChhHHHHHHHHHHHhhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccchHHHH
Q 011948 236 GYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILR 315 (474)
Q Consensus 236 GY~~~~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~K~lLR 315 (474)
||.+|+..|....|++|+.+++.+++.+|++|.||++|++|+|+|+||||++|||||++||+++|+.++ ++.+|+|||
T Consensus 356 GY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R~PfLD~~lve~a~~lP~~~k~~~~--g~~~K~iLR 433 (553)
T 1ct9_A 356 GYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGN--GKMEKHILR 433 (553)
T ss_dssp CSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEECGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHH
T ss_pred CcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeECCcCCHHHHHHHhcCCHHHhccCC--CCcchHHHH
Confidence 999999999888899999999999999999999999999999999999999999999999999999852 247899999
Q ss_pred HhhccCCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHhCCccc
Q 011948 316 KAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNS 395 (474)
Q Consensus 316 ~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~~~~~~ 395 (474)
+||++ +||++|+||+|+||+.|++++|++.++++++++++|+.+++++..+|.++|.|||+||||+||++|||+++
T Consensus 434 ~a~~~----~LP~~i~~R~K~~f~~p~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~f~~~~~~~~ 509 (553)
T 1ct9_A 434 ECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPS 509 (553)
T ss_dssp HHHGG----GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCHHHHHTHHHHCCSSCCCSHHHHHHHHHHHHHCCCHH
T ss_pred HHHHh----hCCHHHHcCCCcCCCCCccHhHHHHHHHHHHHHhChHHHHhhhhhcCCCCCCchhHHHHHHHHHHHCCcHH
Confidence 99999 99999999999999999998899889999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccchhhhchHhhhcCCCCCchhHHHhhHHHh
Q 011948 396 ARLTVPGGASVACSTAKAVEWDAEWANNLDPSGRAALGVHLSAY 439 (474)
Q Consensus 396 ~~~~~~~~~~~~c~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~ 439 (474)
+..+||.++||+|||+++++|+|+|++.+|||||++ ++|.++|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~d~s~r~~-~~~~~~~ 552 (553)
T 1ct9_A 510 AAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAV-GVHQSAY 552 (553)
T ss_dssp HHHHSCC-------------------------------------
T ss_pred HHhhCCCCCCcccccHHHhhhhhhhCcCCCCcchhh-hhhhccC
Confidence 999999999999999999999999999999999975 9998887
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=7e-68 Score=565.07 Aligned_cols=332 Identities=23% Similarity=0.347 Sum_probs=283.6
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhccc----------------CcceEeCCCcE
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC----------------EHFEAFPPGHL 64 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~----------------~~I~~lpPG~~ 64 (474)
+|+|||||++||.++ ++++|||+|+|||||+.. ++.++||||+|+|+..+ ++|++|||||+
T Consensus 116 ~l~G~fA~~i~d~~~--l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~ 192 (513)
T 1jgt_A 116 LVNGRFATVVRTGDR--VLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAV 192 (513)
T ss_dssp TCCEEEEEEEEETTE--EEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEE
T ss_pred hcCeeEEEEEEECCE--EEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcE
Confidence 589999999999854 999999999999999986 78899999999998865 89999999999
Q ss_pred EEec--CCe--eEEeeCCCCccCCCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccc
Q 011948 65 YSSK--SGG--LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAA 140 (474)
Q Consensus 65 l~~~--~~~--~~~y~~p~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~ 140 (474)
+.++ +++ .++||++.... ...+.++.+++++++|++||++|+++|+|+|++||||+|||+|++++++..
T Consensus 193 l~i~~~~g~~~~~~yw~~~~~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~------ 265 (513)
T 1jgt_A 193 MDIDLGSGTAVTHRTWTPGLSR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA------ 265 (513)
T ss_dssp EEEETTTTEEEEEECCCCCCSC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH------
T ss_pred EEEEcCCCCEEEEeecCCcccc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC------
Confidence 9887 564 57899986542 222445667899999999999999999999999999999999999998876
Q ss_pred cccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCC
Q 011948 141 RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLG 220 (474)
Q Consensus 141 ~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G 220 (474)
.+++|||+++++.+|..+|+++|+++|++|+++.++.+++.+.+++++++++++++....+.+++|++++.+ +.|
T Consensus 266 ----~~v~tfti~~~~~~E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g 340 (513)
T 1jgt_A 266 ----GELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGP 340 (513)
T ss_dssp ----SSCEEEEEECSSCCCHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSS
T ss_pred ----CCceEEEcCCCCCCHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcC
Confidence 368999999998899999999999999999999999999999999999999887654445567889998887 578
Q ss_pred CcEEEEcCchhhhccCCchhhcCCChhHHHHHHHHHHHhhcchhhhhcccccc----cCCceeecccCCHHHHHHHHcCC
Q 011948 221 VKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTS----AWGLEARVPFLDKDFINVAMAID 296 (474)
Q Consensus 221 ~~vvLsG~GgDElfgGY~~~~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~----a~glE~R~PfLD~~vve~a~slP 296 (474)
++|+|||+||||+|+||.+| |....+..| .+.+++.++++ ||++| ++|+|+|+||||++|||||++||
T Consensus 341 ~~VvltG~GaDElfgGY~~~---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP 412 (513)
T 1jgt_A 341 ERRILTGYGADIPLGGMHRE---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLE 412 (513)
T ss_dssp CCEEECCTTTHHHHTTTCCC---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBC
T ss_pred CCEEEeCCChhhcccCcccc---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCC
Confidence 99999999999999999977 444556655 35566777887 99999 99999999999999999999999
Q ss_pred ccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCcchhhhHHHHHHHH-HHhhccHHHHh
Q 011948 297 PEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHA-EQHVTDKMVQN 365 (474)
Q Consensus 297 ~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~-~~~l~d~~l~~ 365 (474)
+++|+.+ +.+|+|||+||++ +||++|++|+|+||+.|+++.|+ +++++ +++++++.+.+
T Consensus 413 ~~~k~~~----~~~K~iLR~a~~~----~lP~~i~~R~K~gf~~p~~~~~~--l~~~~~~~~~~~~~~~~ 472 (513)
T 1jgt_A 413 AGLKRRH----GRDKWVLRAAMAD----ALPAETVNRPKLGVHEGSGTTSS--FSRLLLDHGVAEDRVHE 472 (513)
T ss_dssp HHHHEET----TEETHHHHHHHTT----TSCHHHHHSCCC---------CH--HHHHHHHHCCCTTSHHH
T ss_pred HHHhcCC----CCCHHHHHHHHHh----hCCHHHHhCCcCCCCCChhHHHH--HHHHHHHhhcCHHHHHH
Confidence 9999985 4689999999999 99999999999999999998887 78898 88888877665
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=100.00 E-value=3e-67 Score=559.29 Aligned_cols=354 Identities=23% Similarity=0.369 Sum_probs=290.7
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCce-----------------EEEecCccchhcc--------cCc
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGS-----------------IWISSELKGLNDD--------CEH 55 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~-----------------~~faSeik~L~~~--------~~~ 55 (474)
+|+|+|||++||..++ ++++|||+|+|||||+.. ++. ++||||+++|... +++
T Consensus 99 ~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~ 176 (503)
T 1q15_A 99 LAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKN 176 (503)
T ss_dssp GCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTT
T ss_pred HcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCC
Confidence 5899999999999888 999999999999999975 566 9999999999887 899
Q ss_pred ceEeCCCcEEEecC-C-----eeEEeeCCCCccC-CCCCCCCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHH
Q 011948 56 FEAFPPGHLYSSKS-G-----GLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 128 (474)
Q Consensus 56 I~~lpPG~~l~~~~-~-----~~~~y~~p~~~~~-~~~~~~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaa 128 (474)
|++|||||++.++. + +.++||++..... ...+.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++
T Consensus 177 v~~l~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaa 256 (503)
T 1q15_A 177 AQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTA 256 (503)
T ss_dssp EEECCSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHH
T ss_pred eEEECCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHH
Confidence 99999999998853 2 2678999765421 122345667899999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHH
Q 011948 129 ITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTP 208 (474)
Q Consensus 129 la~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~ 208 (474)
++++.. .++++||+++++.+|..+|+++|+++|++|+++.++++++.+.+++++++++.|++....+.++
T Consensus 257 la~~~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 326 (503)
T 1q15_A 257 LASRHF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSG 326 (503)
T ss_dssp HHTTTC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHhC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHH
Confidence 988754 4799999999888999999999999999999999999999999999999998876544455678
Q ss_pred HHHHHHHHHhCCCcEEEEcCchhhhccCCchh-hcCCChhHHHHHHHHHHHhhcchhhhhcccccccCCceeecccCCHH
Q 011948 209 MFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKD 287 (474)
Q Consensus 209 ~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~-~~~p~~~~~~~e~~~~l~~l~~~d~lr~dr~~~a~glE~R~PfLD~~ 287 (474)
+|++++.+ +.|++|+|||+||||+|+||.+| ...|+...+..|.++++. +++.|.||++|++|+|+|+||||++
T Consensus 327 ~~~l~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~ 401 (503)
T 1q15_A 327 LFNVYRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHS 401 (503)
T ss_dssp HHHHHHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHH
T ss_pred HHHHHHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHH
Confidence 99999988 57899999999999999999987 456666666666666554 6788999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCCCccchHHHHHhhccCCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhcc
Q 011948 288 FINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQ 367 (474)
Q Consensus 288 vve~a~slP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~ 367 (474)
|||||++||+++|+.+ +.+|+|||+||++.. +||++|++|+|+||+.|++.+|+. .+++.. +
T Consensus 402 lve~a~~lP~~~k~~~----~~~K~iLR~a~~~~~--~lP~~i~~R~K~gf~~~~~~~~~~------~~~~~~---~--- 463 (503)
T 1q15_A 402 LISLCHALHPDYKIFD----NEVKNILREYADSLQ--LLPKDIVWRKKIGIHEGSSVNQAF------ANVLGS---T--- 463 (503)
T ss_dssp HHHHHHTBCGGGTEET----TEESHHHHHHHHHTS--CSCHHHHCC---------CHHHHH------HHHHTS---C---
T ss_pred HHHHHHhCCHHHHhCC----CCcHHHHHHHHhcCC--cCCHHHhcCCCCCCCCCcchHHHH------HHHhcc---c---
Confidence 9999999999999986 468999999999731 699999999999999999976642 122211 0
Q ss_pred ccCCCCCcchhHHhHHHHHHHHhCCcc
Q 011948 368 YIFPHNTPLTKEAYYYRMIFERFFPQN 394 (474)
Q Consensus 368 ~~~~~~~~~~ke~~~~~~~f~~~~~~~ 394 (474)
..+ .++|+.|+| +||+++|+++
T Consensus 464 ---~~~-~~~k~~~~y-~~~~~~~~~~ 485 (503)
T 1q15_A 464 ---VDN-YQTKSRFTY-RVYQAFLRGR 485 (503)
T ss_dssp ---TTC-HHHHHHHHH-HHHHHHHTTS
T ss_pred ---ccC-CCchhHHHH-HHHHHHcCCC
Confidence 112 478877655 7999999984
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.47 E-value=1.7e-13 Score=144.03 Aligned_cols=115 Identities=22% Similarity=0.288 Sum_probs=87.8
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcc-cCcceEeCCCcEEEecCC--eeEEeeC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG--GLKRWYN 77 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~~--~~~~y~~ 77 (474)
+|+|+|||++|| .++++++|||+|+|||||+.. ++.++||||.++|... .++|+.||||+++.++.+ +..+||+
T Consensus 153 ~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~ 229 (459)
T 1ao0_A 153 MLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSM 229 (459)
T ss_dssp TCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCS
T ss_pred hhccceEEEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCC
Confidence 589999999999 479999999999999999987 6789999999999875 689999999999988765 3457887
Q ss_pred CCCcc-----C---CCCC---CCCcHHHHHHHHHHHHHHhhc--cCCCEEEecC
Q 011948 78 PTWYS-----E---AIPS---TPYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 118 (474)
Q Consensus 78 p~~~~-----~---~~~~---~~~~~~~lr~~L~~AV~~rl~--sd~pvgv~LS 118 (474)
+.... . ..|. ..+.+.+.+..|.+.+.+.+. .|.-+++..|
T Consensus 230 ~~~~~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~~~~DvVV~VP~~ 283 (459)
T 1ao0_A 230 NINRSICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADVVTGVPDS 283 (459)
T ss_dssp SCCCCEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHCCCCSEEECCTTT
T ss_pred CccccccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcccCCcEEEEECCc
Confidence 54210 0 1121 344577889999998888663 3433444444
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.19 E-value=3.4e-11 Score=115.77 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=62.1
Q ss_pred CcceEEEEEEEECC-CCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCeeEE
Q 011948 1 MLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKR 74 (474)
Q Consensus 1 ~L~G~FAf~i~D~~-~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~ 74 (474)
+|+|+|||++||.+ .++++++||+ |||||+.. ++.++||||+++|.....++..||||+++.++.+.++.
T Consensus 151 ~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~ 221 (240)
T 1xff_A 151 QLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNI 221 (240)
T ss_dssp GCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEE
T ss_pred hcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEE
Confidence 48999999999985 6899999998 99999986 67899999999999888899999999999987665543
No 6
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.15 E-value=4.6e-11 Score=115.95 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhC
Q 011948 92 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 171 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg 171 (474)
.+++.+.+.+.+++. ...++++.||||+||+++++++.+.... .++.++++....+.|...|+++|+++|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456677777777776 4568999999999999999999887631 368888887643478999999999999
Q ss_pred CceEEEEeChhhhHHhHHHHHHhhccCCcc---cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 172 TVHHEFHFTVQDGIDAIEEVIYHVETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 172 ~~h~~i~~~~~~~~~~l~~~i~~le~~~~~---~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
++|+++.+++. .+.+.+.+.. ..... .+.+-+.+..+.+.+.+.|+.++.||+ .||.+.||.
T Consensus 76 i~~~~i~i~~~--~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~-~~e~~~Gy~ 140 (257)
T 2e18_A 76 IGYKVINIKPI--VDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSN-RSEFLTGYF 140 (257)
T ss_dssp CEEEECCCHHH--HHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCC-HHHHHHTCS
T ss_pred CCEEEEEChHH--HHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCc-hhHHhcCCe
Confidence 99988876531 2222211111 00100 011113355677778888999999998 467778874
No 7
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.14 E-value=1e-10 Score=114.48 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccC--cceeEEeecCCCCCcHHHHHHH
Q 011948 89 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG--TQLHSFCVGLEGSPDLKYAKEV 166 (474)
Q Consensus 89 ~~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~--~~l~tftig~~~~~D~~~A~~v 166 (474)
++.++.+...|.+.|+++... .+.+.||||+|||++++++++....... -. .++.++++.+....|...|+++
T Consensus 19 ~~~i~~~~~~L~d~v~~~g~~--~vvvgLSGGvDSsv~a~La~~a~~~lg~---~~~~~~v~av~~~~~~~~d~~~A~~v 93 (271)
T 1kqp_A 19 KQEIEDRVNFLKQYVKKTGAK--GFVLGISGGQDSTLAGRLAQLAVESIRE---EGGDAQFIAVRLPHGTQQDEDDAQLA 93 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--EEEEECCSSHHHHHHHHHHHHHHHHHHH---TTCCCEEEEEECCSSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC--CEEEECCCCHHHHHHHHHHHHHHHHhcc---cCCCceEEEEEeCCCCCCCHHHHHHH
Confidence 344567888888999886544 4677799999999999998876521000 00 1455555543223579999999
Q ss_pred HHHhCC-ceEEEEeChhhhHHhHHHHHHhh-ccCCcccccc----hHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 167 ADYLGT-VHHEFHFTVQDGIDAIEEVIYHV-ETYDVTTIRA----STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 167 A~~lg~-~h~~i~~~~~~~~~~l~~~i~~l-e~~~~~~i~~----~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
|+++|+ +|+++.+++ ..+.+.+.+... +.+....... -+.+..+...|.+.|. +++++.+.||++.||.
T Consensus 94 a~~lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~-lvl~tgn~~E~~~Gy~ 168 (271)
T 1kqp_A 94 LKFIKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGL-LVLGTDHAAEAVTGFF 168 (271)
T ss_dssp HHHHCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTC-EEBCCCCHHHHTTTCS
T ss_pred HHhcCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCC-EEEECccHHHhccCCc
Confidence 999999 888887653 234444433332 2111111111 1224455566666664 5677777899999984
No 8
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.12 E-value=2e-10 Score=108.02 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=74.7
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCCceEEEEeCh-hhhH
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTV-QDGI 185 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~~h~~i~~~~-~~~~ 185 (474)
.+.+++++||||+||++++.++.+.. .++.++++.+.. ..|.++++++|+++|++|+.+.++. .+..
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~ 71 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLA 71 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhc
Confidence 35689999999999999999998754 468888876542 3688999999999999999998764 2211
Q ss_pred -HhH-H-HHHH--hhccCCcccccchHHHH--HHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 186 -DAI-E-EVIY--HVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 186 -~~l-~-~~i~--~le~~~~~~i~~~~~~y--~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
+.+ . .+.. .......+.+.+-...| ++.+.+++.|+++++||+++|+. +||+
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 72 PNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp TGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred ccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 001 0 1100 00011111112222234 44677888899999999999996 5664
No 9
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.11 E-value=1.1e-10 Score=113.90 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHH
Q 011948 92 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 169 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~ 169 (474)
.+.+...|++.|++. ...++++.||||+||+++++++.+..+ .++.++++.+.. ..|...|+++|+.
T Consensus 9 ~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~ 77 (268)
T 1xng_A 9 IVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEK 77 (268)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 455666666666553 245799999999999999999988752 378899987653 2478999999999
Q ss_pred hCCceEEEEeChhhhHHhHHHHHHhhccCCccc---ccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 170 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 170 lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~---i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
+|++|+++.+++ ..+.+ ...++...... +.+-+-+..+.+.+.+.|+.|+.||+ .||.|.||.
T Consensus 78 lgi~~~~i~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~ 143 (268)
T 1xng_A 78 FSIPYTEYSIAP--YDAIF---SSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYG 143 (268)
T ss_dssp HTCCEEECCCHH--HHHHH---HHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCS
T ss_pred cCCCEEEEeChH--HHHHH---HHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCcc
Confidence 999998887653 12221 11111100000 00112344567778888998887776 689998884
No 10
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.07 E-value=5.2e-11 Score=130.56 Aligned_cols=302 Identities=14% Similarity=0.152 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHhhccC--CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHH
Q 011948 93 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 168 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd--~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~ 168 (474)
+++.+.+...+++++... ..+.+.||||+||++.+.++++....-.. -..++.++++.... ..+...|+++|+
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la~ 418 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 566677777777777543 46889999999999866666554311000 00367888876533 246788999999
Q ss_pred HhCCceEEEEeChhhhHHhHHHHHHhhcc--------CCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 169 YLGTVHHEFHFTVQDGIDAIEEVIYHVET--------YDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 169 ~lg~~h~~i~~~~~~~~~~l~~~i~~le~--------~~~~--~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
+||++|+++.+++ ..+.+ +..+.. .+.+ .+.+-+-+-.+...+.+.|.-|+-|| ..+|++.||.
T Consensus 419 ~lgi~~~~i~i~~--~~~~~---~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTg-n~sE~~~Gy~ 492 (680)
T 3sdb_A 419 ALGVTFSEIDIGD--TARLM---LHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTG-DLSELALGWS 492 (680)
T ss_dssp HHTCEEEECCCHH--HHHHH---HHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECC-CHHHHHHTCS
T ss_pred HcCCCEEEEECHH--HHHHH---HHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCC-cHHhHhcCee
Confidence 9999999887653 22221 222211 1110 01111222234445556666444444 4568877884
Q ss_pred hhh-c------CCChhHHHHHHHHHH-HhhcchhhhhcccccccCCceeecccCCHHHHHHHHcCCccccccCCCCCccc
Q 011948 239 YFH-K------APNKEEFHRETCHKI-KALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIE 310 (474)
Q Consensus 239 ~~~-~------~p~~~~~~~e~~~~l-~~l~~~d~lr~dr~~~a~glE~R~PfLD~~vve~a~slP~~~k~~~~~~~~~~ 310 (474)
... . .|.. .+.+..++.+ +.+.....+..+....-..+--|.|+-+-.-++.-.....+..+.+ ...-
T Consensus 493 T~~~gD~~~~~~Pl~-~l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~lg~---Y~~~ 568 (680)
T 3sdb_A 493 TYGVGDQMSHYNVNA-GVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAKVGP---FALQ 568 (680)
T ss_dssp CCSSSTTCCSEETTT-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-------------CHHHHCC---HHHH
T ss_pred eccCCCccccccccC-CCcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcCcCCCCCCCCCCchhhcCC---HHHH
Confidence 322 1 2332 2222222222 1111100000000000111223444444322111122333433321 1234
Q ss_pred hHHHHHhhccCCCCCCChhhhhcccCCCCCcchhhhHHHHHHHHHHhhccHHHHhccccCCCCCcchhHHhHHHHHHHHh
Q 011948 311 KWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERF 390 (474)
Q Consensus 311 K~lLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~l~~~~~~~l~d~~l~~~~~~~~~~~~~~ke~~~~~~~f~~~ 390 (474)
..+|+..++.. +.|++|.++-|..|.+..+..|-+.+.+..+...+++.+.+ +++..|+++
T Consensus 569 D~~L~~~~~~~---~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~----------------~~~~f~~rf 629 (680)
T 3sdb_A 569 DFSLFQVLRYG---FRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRH----------------WLQIFVQRF 629 (680)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHH----------------HHHHHHHHH
T ss_pred HHHHHHHHHCC---CCHHHHHHHHHHHhccccccccccccchhhhcCCCHHHHHH----------------HHHHHHHHH
Confidence 67888888751 78999999999999887766776544433332233333322 444455555
Q ss_pred CC-ccccccccccccccccccchhhhchHh--hhcCCCCCchh
Q 011948 391 FP-QNSARLTVPGGASVACSTAKAVEWDAE--WANNLDPSGRA 430 (474)
Q Consensus 391 ~~-~~~~~~~~~~~~~~~c~~~~~~~w~~~--~~~~~~~~~r~ 430 (474)
|. ++=...+.|-|+.|--+ ....|+ |.-..|.|++.
T Consensus 630 ~~~~qfKr~~~p~gpkv~~~----~~lspr~d~r~psd~~~~~ 668 (680)
T 3sdb_A 630 YSFSQFKRSALPNGPKVSHG----GALSPRGDWRAPSDMSARI 668 (680)
T ss_dssp HTTSHHHHTTCCCCCCCCTT----CCCCTTTTCCCCSSCCCHH
T ss_pred hhhccCCcccCCCCCEeCCC----CCcCCCcccCCccccCHHH
Confidence 55 44444556666666211 124554 66677777773
No 11
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.99 E-value=7.4e-10 Score=119.82 Aligned_cols=135 Identities=18% Similarity=0.126 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCC--CcHHHHHHH
Q 011948 91 DPLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEV 166 (474)
Q Consensus 91 ~~~~lr~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~--~D~~~A~~v 166 (474)
..+++.+.+...++.++.. ...+.+.||||+|||++++++.+.++. .++.++++....+ .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 3566777777777777643 357899999999999999999887531 4788999876543 478999999
Q ss_pred HHHhCCceEEEEeChhhhHHhHHHHHHhhccCCc--ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCch
Q 011948 167 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (474)
Q Consensus 167 A~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~--~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~ 239 (474)
|++||++|+++.+++. .+.+. ..+...+. ..+.+-+.+.++...+.+.|..|+.|| +.||++.||..
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~---~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t 445 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYM---ASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYST 445 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHH---HHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCC
T ss_pred HHHcCCcEEEEEChHH--HHHHH---HHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchh
Confidence 9999999999876542 22221 11111110 011122334556667777899999999 78899989853
No 12
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=98.96 E-value=6.8e-10 Score=117.85 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=58.6
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEec--C--ceEEEecCccchhcc-cCcceEeCCCcEEEecC
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--D--GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS 69 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~--~--g~~~faSeik~L~~~-~~~I~~lpPG~~l~~~~ 69 (474)
+|+|+|||++|+.. ++++++|||+|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.
T Consensus 162 ~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~ 234 (504)
T 1ecf_A 162 LIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITE 234 (504)
T ss_dssp HCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEET
T ss_pred hcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeC
Confidence 37899999999854 579999999999999999862 3 479999999999875 67799999999998863
No 13
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.95 E-value=2.9e-09 Score=99.66 Aligned_cols=111 Identities=23% Similarity=0.212 Sum_probs=74.8
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhH
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 188 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l 188 (474)
...++++++|||+||++++.++.+.. .++.++++.+...+|..+++++|+.+|++|+.+.++.+..-+.+
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~~~g----------~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~ 74 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKKLG----------YNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAA 74 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHTT----------EEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHH
T ss_pred cCCeEEEEEECcHHHHHHHHHHHHcC----------CCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHH
Confidence 33579999999999999999887643 46888887665444899999999999999999998764322223
Q ss_pred HHHHHhhccCCcccccchHH-HHHHHHHHHhCCCcEEEEcCchhhhcc
Q 011948 189 EEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFG 235 (474)
Q Consensus 189 ~~~i~~le~~~~~~i~~~~~-~y~l~~~a~~~G~~vvLsG~GgDElfg 235 (474)
+.+.. +.. +...+... .+++.+.+ + |+++++||+..|...-
T Consensus 75 ~~~~~--~~~--~~~~c~~~~~~~l~~~A-~-g~~~i~tGh~~dD~~e 116 (203)
T 3k32_A 75 DMIIE--HKY--PGPAIQYVHKTVLEILA-D-EYSILADGTRRDDRVP 116 (203)
T ss_dssp HHHHH--HSS--SHHHHHHHHHHHHHHHT-T-TCSEEECCCCTTCCSS
T ss_pred HHHHh--cCC--CccHHHHHHHHHHHHHh-c-CCCEEEECCCcccchh
Confidence 32222 111 11111222 23333333 4 8999999999998763
No 14
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=98.83 E-value=4.3e-09 Score=114.22 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=61.0
Q ss_pred CcceEEEEEEEECCC-CEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCcceEeCCCcEEEecCCee
Q 011948 1 MLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 72 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~-~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~ 72 (474)
+|+|+|||++||..+ ++++++||+ +||||+.. ++.++||||+++|......+..|+||+++.++.+.+
T Consensus 151 ~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~~ 219 (608)
T 2bpl_A 151 QLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSV 219 (608)
T ss_dssp GCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSCE
T ss_pred hhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCeE
Confidence 489999999999987 899999998 99999986 678999999999999889999999999988765433
No 15
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.82 E-value=1.4e-08 Score=98.07 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=85.9
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHH
Q 011948 90 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVA 167 (474)
Q Consensus 90 ~~~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA 167 (474)
+..+.+.+.|++.|++.- ...+.+.||||+||+++++++.+... ..+ ++++.... ..|...|+++|
T Consensus 11 ~~~~~l~~~l~~~v~~~~--~~~vvv~lSGGiDSsv~a~l~~~~~~---------~~~-av~~~~~~~~~~~~~~a~~~a 78 (249)
T 3fiu_A 11 EYSQKLVNWLSDSCMNYP--AEGFVIGLSGGIDSAVAASLAVKTGL---------PTT-ALILPSDNNQHQDMQDALELI 78 (249)
T ss_dssp HHHHHHHHHHHHHHHTTT--CSEEEEECCSSHHHHHHHHHHHHTTS---------CEE-EEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEecCcHHHHHHHHHHHHhCC---------CCE-EEEecCCCCCHHHHHHHHHHH
Confidence 345677777888877643 34689999999999999999988652 234 77776542 34789999999
Q ss_pred HHhCCceEEEEeChhhhHHhHHHHHH-hhc---cCCccccc---chHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 168 DYLGTVHHEFHFTVQDGIDAIEEVIY-HVE---TYDVTTIR---ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 168 ~~lg~~h~~i~~~~~~~~~~l~~~i~-~le---~~~~~~i~---~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
+++|++|+++.+++. .+.+.+.+. .++ ++...+.. +-+-+..+...|.+.|..++-||+ .||.+.||.
T Consensus 79 ~~lgi~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~ 153 (249)
T 3fiu_A 79 EMLNIEHYTISIQPA--YEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYF 153 (249)
T ss_dssp HHHTCEEEECCCHHH--HHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCS
T ss_pred HHhCCCEEEEEChHH--HHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCch
Confidence 999999998876432 222222111 001 01100000 011233456667778999999995 568887874
No 16
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.80 E-value=5.4e-09 Score=100.91 Aligned_cols=128 Identities=19% Similarity=0.172 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHh
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 170 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~l 170 (474)
+.+...|.+.|++. ....+.+.||||+||+++++++.+..+ .++.++++.... ..|...|+++|+.+
T Consensus 11 ~~l~~~l~d~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~g---------~~v~av~~~~~~~~~~~~~~a~~~a~~l 79 (249)
T 3p52_A 11 EKMCDFIQEKVKNS--QSQGVVLGLSGGIDSALVATLCKRALK---------ENVFALLMPTQISNKANLEDALRLCADL 79 (249)
T ss_dssp HHHHHHHHHHHHTS--SCSEEEEECCSSHHHHHHHHHHHHHHT---------TSEEEEECCSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEcCCCHHHHHHHHHHHHHcC---------CcEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 44455555555442 245789999999999999999988652 478888887643 35789999999999
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhccCCcccccch----HHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAS----TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~----~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
|++|+.+.+++ ..+. ....+.+.+. ..... +-+..+...|.+.|+.++-||+ .||++.||.
T Consensus 80 gi~~~~v~i~~--~~~~---~~~~~~~~~~-~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~g~~ 144 (249)
T 3p52_A 80 NLEYKIIEIQS--ILDA---FIKQSENTTL-VSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLLGYG 144 (249)
T ss_dssp TCEEEECCCHH--HHHH---HHTTCSCCCH-HHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHTCS
T ss_pred CCCEEEEECcH--HHHH---HHHhccccCC-ccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHccch
Confidence 99998876643 2222 1111111111 01111 1123456677788887666665 466666664
No 17
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.78 E-value=2.7e-08 Score=97.39 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhccccccc-ccCcceeEEeecCCCCCcHHHHHHHHHHh
Q 011948 92 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYL 170 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~-~~~~~l~tftig~~~~~D~~~A~~vA~~l 170 (474)
++.+...|.+.|++.- ....+.+.||||+|||++++++++....-+... .-+.++.++++.+....|...|+++|+++
T Consensus 23 i~~~~~~L~~~l~~~g-~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~l 101 (275)
T 1wxi_A 23 IRRSVDFLKSYLQTYP-FIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFI 101 (275)
T ss_dssp HHHHHHHHHHHHHHST-TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHc
Confidence 3445555555555421 023688999999999999998887642100000 00025777777654345899999999999
Q ss_pred CC-ceEEEEeChhhhHHhHHHHHHhhccCCcccccch----HHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 171 GT-VHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAS----TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 171 g~-~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~----~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
|+ +|+++.+++ ..+.+.+................ +-+..+...|.+.|..|+-|| ..+|++.||.
T Consensus 102 gi~~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~ 171 (275)
T 1wxi_A 102 QPDRVLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFF 171 (275)
T ss_dssp CCSEEEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCS
T ss_pred CCCeEEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCcc
Confidence 99 888887643 23333222222111100011111 112334455666776555444 5678888884
No 18
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.77 E-value=3.2e-08 Score=94.14 Aligned_cols=116 Identities=19% Similarity=0.292 Sum_probs=74.7
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCCc-eEEEEeCh-hhhHH-
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTV-QDGID- 186 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~~-h~~i~~~~-~~~~~- 186 (474)
++.++||||+||++++.++.+.. .++.++++.+.. ..|.++|+++|+++|++ |+++.++. +++..
T Consensus 4 kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~ 73 (232)
T 2pg3_A 4 RAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATS 73 (232)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHH
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhhh
Confidence 58999999999999999988764 367777765432 35889999999999999 99998872 22221
Q ss_pred hHHHH---H----HhhccCCcccccchHHHH--HHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 187 AIEEV---I----YHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 187 ~l~~~---i----~~le~~~~~~i~~~~~~y--~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
.+.+. + +..+....+.+.+--..| +..+.|.+.|++++++|+.+|+.. ||+
T Consensus 74 ~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~ 133 (232)
T 2pg3_A 74 SLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYP 133 (232)
T ss_dssp HHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCG
T ss_pred hcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCC
Confidence 11110 0 001111111222211222 225667788999999999999875 453
No 19
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.61 E-value=1.7e-07 Score=96.68 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=74.2
Q ss_pred cCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCCc-eEEEEeChhhhHH-
Q 011948 109 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGID- 186 (474)
Q Consensus 109 sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~~-h~~i~~~~~~~~~- 186 (474)
+..++++++|||+||++++.++.+.. .++.++++.+....|.+.++++|+.+|++ |+.+.++ +++.+
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~ 72 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEE 72 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHH
Confidence 34579999999999999999998752 47888988765557899999999999998 6666664 33332
Q ss_pred hHHHHHHhhcc----CCcc-c-ccchHHHHHHHHHHHhCCCcEEEEcCch
Q 011948 187 AIEEVIYHVET----YDVT-T-IRASTPMFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 187 ~l~~~i~~le~----~~~~-~-i~~~~~~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
.+...+..... +... . .| ....-.+.+.|++.|++++.+|+.+
T Consensus 73 ~~~~~i~~~a~~e~~y~~g~~~aR-p~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 73 FIWPAIQSSALYEDRYLLGTSLAR-PCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp THHHHHHTTCCBTTTBCCTTTTHH-HHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHhCcccccccccccccch-HHHHHHHHHHHHHcCCCEEEECCcC
Confidence 22222321111 1110 0 11 1112345677888899999999987
No 20
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.58 E-value=2.3e-07 Score=92.19 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHH-HHHHh
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADYL 170 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~-vA~~l 170 (474)
.+.+...+.++..+. +.++.++||||+||++++.++.+..+ .++.++++... ...|...+++ +++++
T Consensus 5 ~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~g---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAIG---------DRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp HHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhhC---------CCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 344444455555554 45899999999999999999988742 46788877542 3467778887 66789
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhccCCccc-ccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~-i~~~~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
|++|+.+.++.. +.+.+.. ...+.... +........+.+.|++.|++.+++|+..|.+
T Consensus 75 gi~~~vv~~~~~-f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 75 GMNLHYVDAQDR-FFSALKG----VTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CCEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CCcEEEEECCHH-HHHhhhC----CCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 999999887532 2221110 00010000 0001112345667778899999999988754
No 21
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.56 E-value=3.4e-07 Score=94.12 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=73.9
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCC-ceEEEEeChhhhHHh-HH
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-IE 189 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~-~h~~i~~~~~~~~~~-l~ 189 (474)
++++++|||+|||+++.++.+... .++.++++......|.++++++|+.+|+ +++.+.+.. ++.+. ..
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~g---------~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~~-ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETYR---------AEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE-EFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHT---------CEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhhC---------CcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHhhH
Confidence 478999999999999999987642 4688888765445789999999999999 677777643 33322 22
Q ss_pred HHHHhhcc----CCccc--ccchHHHHHHHHHHHhCCCcEEEEcCchh
Q 011948 190 EVIYHVET----YDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (474)
Q Consensus 190 ~~i~~le~----~~~~~--i~~~~~~y~l~~~a~~~G~~vvLsG~GgD 231 (474)
..+..... |...+ .|..+ ...+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~-~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLI-AKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHH-HHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHH-HHHHHHHHHHcCCCEEEECCCCC
Confidence 22222111 21111 11112 23567778888999999999986
No 22
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.54 E-value=2.6e-07 Score=94.91 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHhCC-ceEEEEeChhhhHHh-H
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 188 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~lg~-~h~~i~~~~~~~~~~-l 188 (474)
.++.+++|||+|||++++++.+.. ..+.++++......|.+.|+++|+++|+ +|+++.+. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 468999999999999999998763 5788888766444799999999999999 89998875 333322 2
Q ss_pred HHHHHhh---c-cCCcccc--cchHHHHHHHHHHHhCCCcEEEEcCch
Q 011948 189 EEVIYHV---E-TYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGS 230 (474)
Q Consensus 189 ~~~i~~l---e-~~~~~~i--~~~~~~y~l~~~a~~~G~~vvLsG~Gg 230 (474)
...+... | .|..++. +..+ .-.+.+.|++.|++.+.+|.-+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i-~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLI-AKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHH-HHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHH-HHHHHHHHHHcCCCEEEECCee
Confidence 2222211 1 1221111 1111 1235567788899999999876
No 23
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=98.53 E-value=7e-08 Score=94.37 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=51.0
Q ss_pred EEEEEEECCCCEEEEEecc-CCCceEEEEEecC--ceEEEecCccchhcccCcceEeCCCcEEEecCCeeEE
Q 011948 6 FSFVLLDTRDNSFIVARDA-IGITSLYIGWGLD--GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKR 74 (474)
Q Consensus 6 FAf~i~D~~~~~l~laRD~-~G~kPLyy~~~~~--g~~~faSeik~L~~~~~~I~~lpPG~~l~~~~~~~~~ 74 (474)
|+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |......+..||||+++.++.+.++.
T Consensus 187 ~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~~~~v~pGeiv~i~~~~v~~ 254 (274)
T 3mdn_A 187 LSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGDWTELRPGRMLTIGAEGAAE 254 (274)
T ss_dssp EEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSCCEECCSSEEEEEETTEEEE
T ss_pred EEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCceEEEECcCEEEEEeCCeEEE
Confidence 99999985 689999998 9999955555433 789999997 43344789999999999998766544
No 24
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.50 E-value=6.6e-07 Score=89.24 Aligned_cols=126 Identities=10% Similarity=0.063 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHh--hccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcc-eeEEeecC--CC--CCcHHHHHH
Q 011948 93 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ-LHSFCVGL--EG--SPDLKYAKE 165 (474)
Q Consensus 93 ~~lr~~L~~AV~~r--l~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~-l~tftig~--~~--~~D~~~A~~ 165 (474)
..+.+.+.+++++. +....++.+.+|||.||++++.++.+.... ++.+ +.++++.. .. ..|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 45677777888775 445678999999999999999998875321 1245 77777643 21 246889999
Q ss_pred HHHHhCCceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 011948 166 VADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 166 vA~~lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
+|+.+|++++.+.++..++.+. . ..+. ...+....| .+.+.+++.|++++++|+-+|..
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~-------~-~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~ 138 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE-------N-RMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH-------T-TCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc-------C-CCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHH
Confidence 9999999999998875432111 0 0110 000111233 45667788899999999998864
No 25
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.50 E-value=2.1e-07 Score=95.10 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--C--------CCcHHHHHHHHHHhCCceEEEEe
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G--------SPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~--------~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
..++.+.+|||+||++++.++.+.. .++.++++... + ..|...|+++|+.+|++|+.+.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3479999999999999999998764 46777776432 1 13688999999999999999998
Q ss_pred ChhhhHHhHHHHHHhh---ccCCcccccchHH--HHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 180 TVQDGIDAIEEVIYHV---ETYDVTTIRASTP--MFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 180 ~~~~~~~~l~~~i~~l---e~~~~~~i~~~~~--~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
+.+..-..+...+... .+++ +++.+... +..+.+.|++.|++.+.||+.+|...
T Consensus 79 ~~~~~~~v~~~~l~~y~~G~tpn-pc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAGRTPN-PDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCC-HHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 6432111112222111 2232 12221111 22456778889999999999998765
No 26
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.34 E-value=1e-06 Score=86.23 Aligned_cols=87 Identities=9% Similarity=0.028 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccc-cccCcceeEEeecCCCCCcHHHHHHHHHHh
Q 011948 92 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAA-RQWGTQLHSFCVGLEGSPDLKYAKEVADYL 170 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~-~~~~~~l~tftig~~~~~D~~~A~~vA~~l 170 (474)
++.+...|.+.|++.- -..+.+.||||+||+++++++.+....-... ...+.++.++++.+....|...|+++|+.+
T Consensus 24 i~~~v~~L~d~l~~~g--~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~l 101 (279)
T 3q4g_A 24 IERRVAFIKRKLTEAR--YKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFI 101 (279)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHh
Confidence 4445555555555432 2468899999999999999876542100000 000125666666554445789999999999
Q ss_pred CC-ceEEEEeC
Q 011948 171 GT-VHHEFHFT 180 (474)
Q Consensus 171 g~-~h~~i~~~ 180 (474)
|+ +|+++.++
T Consensus 102 gi~~~~~i~i~ 112 (279)
T 3q4g_A 102 RPTHSVSVNIK 112 (279)
T ss_dssp CCSEEEECCCH
T ss_pred CCCeEEEEECH
Confidence 99 78887664
No 27
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.32 E-value=1.2e-06 Score=89.55 Aligned_cols=112 Identities=22% Similarity=0.215 Sum_probs=73.4
Q ss_pred CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC----------CCcHHHHHHHHHHhCCceEEEEe
Q 011948 110 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 179 (474)
Q Consensus 110 d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~----------~~D~~~A~~vA~~lg~~h~~i~~ 179 (474)
..++.+.+|||+||++++.++.+.. .++.++++.... ..|...|+++|+.||++|+.+.+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQG----------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTTC----------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHcC----------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4578999999999999999988653 467777764321 14688999999999999999987
Q ss_pred ChhhhHHh-HHHHHHhh---ccCCcccccchHH--HHHHHHHHHh-CCCcEEEEcCchhhh
Q 011948 180 TVQDGIDA-IEEVIYHV---ETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEI 233 (474)
Q Consensus 180 ~~~~~~~~-l~~~i~~l---e~~~~~~i~~~~~--~y~l~~~a~~-~G~~vvLsG~GgDEl 233 (474)
+.+ +.+. +...+... .+++ +++.+... .-.+.+.|.+ .|++.+.||+-+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpn-pc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPN-PDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCC-HHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 643 2221 11111111 1232 12222111 1245566777 899999999988854
No 28
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.28 E-value=1.9e-06 Score=89.40 Aligned_cols=111 Identities=21% Similarity=0.138 Sum_probs=73.3
Q ss_pred hccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCC--CCcHHHHHHHHHHhCC-ceEEEEeChhh
Q 011948 107 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQD 183 (474)
Q Consensus 107 l~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~--~~D~~~A~~vA~~lg~-~h~~i~~~~~~ 183 (474)
+....++.+++|||+|||+++.++.+.. ..+.++++.... ..|.+.|+++|+.+|+ +|+.+.+. ++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~G----------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~-ee 75 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR-KQ 75 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-HH
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-HH
Confidence 4455679999999999999999997752 478888875432 3589999999999999 89998875 33
Q ss_pred hHHhHHHHHHhh-----cc---CCcccc--cchHHHHHHHHHHHhCCCcEEEEcCc
Q 011948 184 GIDAIEEVIYHV-----ET---YDVTTI--RASTPMFLMSRKIKSLGVKMVISGEG 229 (474)
Q Consensus 184 ~~~~l~~~i~~l-----e~---~~~~~i--~~~~~~y~l~~~a~~~G~~vvLsG~G 229 (474)
+.+.+-..+... |. |...+. |..+ .-.+.+.|++.|++.+.+|.-
T Consensus 76 f~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i-~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 76 LVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVT-GTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHH-HHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHhHHHHHcCCcccccCceecccCCcchHHHH-HHHHHHHHHHcCCCEEEECCc
Confidence 432211222211 11 211110 1111 123566788889999999993
No 29
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.17 E-value=3.4e-06 Score=89.87 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHH-HHHHh
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKE-VADYL 170 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~-vA~~l 170 (474)
.+.+.+.+.++..+.. .++.+.||||+||++++.++.+... .++.++++. +....|...+.+ +|+++
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~G---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 284 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAIG---------DQLVCVLVDTGLLRLNEVDEVLNVFQKHL 284 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHHG---------GGEEEEEECCSCSCTTHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHhC---------CeEEEEEeccCCCChhHHHHHHHHHHHHc
Confidence 3444444555555544 6799999999999999999988742 467777764 444467777765 99999
Q ss_pred CCceEEEEeChhhhHHhHHHHHHhhccCCcccccch---HHHH-HHHHHHHhCCCcEEEEcCchhhhc
Q 011948 171 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAS---TPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 171 g~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~---~~~y-~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
|++|+.+.++.. +.+. ++....+..... ..++ .+.+.|++.|++.+++|+-.|.+.
T Consensus 285 gi~~~vv~~~~~-~~~~-------l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 285 GAKVICVDAKDR-FMKA-------LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp CCEEEEECCHHH-HHSS-------SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred CCcEEEEeChHH-HHHh-------hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 999998875432 1111 111110000000 0122 234567778999999999877764
No 30
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.17 E-value=1.9e-06 Score=84.46 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=71.2
Q ss_pred HHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHh---hcccccccccCc--ceeEEeecCCCCCcHHHHHHHHHHhC-C
Q 011948 101 NAVIKRLMT--DVPFGVLLSGGLDSSLVASITARH---LAGTKAARQWGT--QLHSFCVGLEGSPDLKYAKEVADYLG-T 172 (474)
Q Consensus 101 ~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~---~~~~~~~~~~~~--~l~tftig~~~~~D~~~A~~vA~~lg-~ 172 (474)
..++.++.. -..+.+.||||+||+++++++++. ++.. +. .+.+++..+....|...|+++|+.+| +
T Consensus 35 ~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~lg~i 108 (285)
T 3dpi_A 35 GFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAFVRAD 108 (285)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHHcCCC
Confidence 444444432 346889999999999998776653 2111 11 35666654433357788999999999 6
Q ss_pred ceEEEEeChhhhHHhHHHHHHhhc-cCC-----c---ccccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCc
Q 011948 173 VHHEFHFTVQDGIDAIEEVIYHVE-TYD-----V---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (474)
Q Consensus 173 ~h~~i~~~~~~~~~~l~~~i~~le-~~~-----~---~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~ 238 (474)
+|+++.+++ ..+.+.+.+.... ++. . ..+.+-+-+-.+...|.+.|.-|+=||+- .|++.||.
T Consensus 109 ~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~-sE~~~Gy~ 180 (285)
T 3dpi_A 109 ETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHA-AESVMGFF 180 (285)
T ss_dssp EEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHHHHHH
T ss_pred cEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccH-HhhhCCcc
Confidence 888877643 2333322221100 110 0 00111122334556667778766667665 46677764
No 31
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.13 E-value=9.9e-06 Score=86.23 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHH-HHHH
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADY 169 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~-vA~~ 169 (474)
+.+.+.+.+.++..+.. .++.+.||||+||+++++++.+..+ .++.++++... ...|.+.+.+ +|++
T Consensus 211 ~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~G---------~~v~av~v~~g~~~~~e~~~~~~~la~~ 280 (525)
T 1gpm_A 211 AKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAIG---------KNLTCVFVDNGLLRLNEAEQVLDMFGDH 280 (525)
T ss_dssp HHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHTTT
T ss_pred HHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHhC---------CCEEEEEEeCCCCCchHHHHHHHHHHHH
Confidence 45555555666666544 6899999999999999999988642 46888887542 2357777755 8999
Q ss_pred hCCceEEEEeChhhhHHhHHHHHHhhccCCccc-ccchHHHHHHHHHHHhC-CCcEEEEcCch
Q 011948 170 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGS 230 (474)
Q Consensus 170 lg~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~-i~~~~~~y~l~~~a~~~-G~~vvLsG~Gg 230 (474)
+|++|+.+.++. .+.+.+.. ...+.... +....-...+.+.|++. |++.+++|.-.
T Consensus 281 lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~ 338 (525)
T 1gpm_A 281 FGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIY 338 (525)
T ss_dssp TCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCH
T ss_pred hCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 999999988754 22222211 11110000 00001112345667777 89999999853
No 32
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.07 E-value=1.7e-05 Score=83.08 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHHh--hccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCC--C-CcHHHHHHHHHHhC
Q 011948 99 FENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEG--S-PDLKYAKEVADYLG 171 (474)
Q Consensus 99 L~~AV~~r--l~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~--~-~D~~~A~~vA~~lg 171 (474)
+.+.+++. +....++.+.+|||.||++++.++.+..... +.++.++++. ..+ + .|..+++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 34455543 3456689999999999999999988754221 2466676664 432 1 36789999999999
Q ss_pred CceEEEEeChhhhHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 011948 172 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 172 ~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
++++.+.++...+.+. ..... ...+....| ++.+.+++.|+.++++|+-+|..
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~~-e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~ 132 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLGA-QEAARICRYRFFAELMEKHQAGYVAVGHHGDDQ 132 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCCS-HHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHH
T ss_pred CcEEEEEechhhhhhc--------cCCCH-HHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHH
Confidence 9999998865432110 00110 000111223 45566778899999999988853
No 33
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.06 E-value=2.8e-05 Score=82.31 Aligned_cols=124 Identities=16% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhC
Q 011948 94 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLG 171 (474)
Q Consensus 94 ~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg 171 (474)
.+.+...+.+++.+.. .++.+.||||+||++++.++.+.. .++.++++. +....|.+.++++++.+|
T Consensus 194 ~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~lg 262 (503)
T 2ywb_A 194 HVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRALG 262 (503)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHTT
T ss_pred hhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHhC
Confidence 3334444455555543 579999999999999999998763 467777764 333468899999999999
Q ss_pred CceEEEEeChhhhHHhHHHHHHhhccCCccc-ccchHHHHHHHHHHHhC-CCcEEEEcCchhhh
Q 011948 172 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (474)
Q Consensus 172 ~~h~~i~~~~~~~~~~l~~~i~~le~~~~~~-i~~~~~~y~l~~~a~~~-G~~vvLsG~GgDEl 233 (474)
++|+.+.++. .+.+.+.. ...+.... +....-...+.+.|++. |++.+++|+..|.+
T Consensus 263 i~~~vv~~~~-~f~~~l~g----~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~ 321 (503)
T 2ywb_A 263 VNLLVVDAKE-RFLKALKG----VEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDV 321 (503)
T ss_dssp CCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHH
T ss_pred CCEEEEECcH-HHHHhhcC----CCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccc
Confidence 9999998653 22221110 00010000 00001112344556666 89999999976544
No 34
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.00 E-value=2.4e-05 Score=85.10 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCEEEecCCcccHHHHHHHHH-------Hhhccccccc--------ccC----------
Q 011948 92 PLVLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITA-------RHLAGTKAAR--------QWG---------- 144 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~--sd~pvgv~LSGGLDSS~Iaala~-------~~~~~~~~~~--------~~~---------- 144 (474)
.+++...+...++.++. ....+.+.||||+|||++|++++ +..+..+... ...
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 35566666666666554 24568899999999999999833 3332110000 000
Q ss_pred ------cceeEEeecCCCC--CcHHHHHHHHHHhCCceEEEEeCh
Q 011948 145 ------TQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 145 ------~~l~tftig~~~~--~D~~~A~~vA~~lg~~h~~i~~~~ 181 (474)
.-+++...+..++ .+...|+++|+.||++|+++.+.+
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~ 407 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE 407 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH
Confidence 0056766665443 367889999999999999998753
No 35
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=97.92 E-value=4.6e-05 Score=71.28 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=67.8
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhH
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 188 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l 188 (474)
.++.+.+|||.||++++.++.+.. .++..+++.. ....+..+++++++.+|++++.+..+.. ..+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~-~~~~~ 113 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQE 113 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC-HHHHH
Confidence 479999999999999999998765 3566666543 2223578999999999999998876532 11111
Q ss_pred HHHHHhhccCCc-ccc--cch-HH-HHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 189 EEVIYHVETYDV-TTI--RAS-TP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 189 ~~~i~~le~~~~-~~i--~~~-~~-~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
.. .-..+.. +.. +.. .. ...+.+.+++.|+.++++|.-.|+-
T Consensus 114 ~~---~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~ 160 (215)
T 1sur_A 114 AR---YGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 160 (215)
T ss_dssp HH---HCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSS
T ss_pred Hh---cCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhh
Confidence 11 0011110 000 000 00 0124456677788899999998883
No 36
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.89 E-value=9.1e-05 Score=79.44 Aligned_cols=138 Identities=20% Similarity=0.188 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhhcc--CCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCc--HHHHHHHH
Q 011948 92 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD--LKYAKEVA 167 (474)
Q Consensus 92 ~~~lr~~L~~AV~~rl~s--d~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D--~~~A~~vA 167 (474)
.+++.+.+.-.++.++.. -..+.+.||||+||+++++++.+.+.. .++++++.....+.+ ...|+.+|
T Consensus 280 ~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~la 351 (565)
T 4f4h_A 280 EAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADMA 351 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHHH
Confidence 356777777777777753 345788999999999999999888753 478888876655543 57899999
Q ss_pred HHhCCceEEEEeChhhhHHhHHHHHHhh-cc--CCcc--cccchHHHHHHHHHHHhCCCcEEEEcCchhhhccCCchh
Q 011948 168 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ET--YDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (474)
Q Consensus 168 ~~lg~~h~~i~~~~~~~~~~l~~~i~~l-e~--~~~~--~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDElfgGY~~~ 240 (474)
+.+|+.|+++.++ ...+.+...+.+. .. .+.+ .+++-+-+-.++..+.+.|.-|+=||+- +|+.-||..+
T Consensus 352 ~~lg~~~~~i~i~--~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~-sE~a~Gy~T~ 426 (565)
T 4f4h_A 352 RRVGVRYDEIAIA--PMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNK-SEMAVGYCTL 426 (565)
T ss_dssp HHHTCEEEECCCH--HHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHTCSCT
T ss_pred HHhCCceeeeecc--hHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCch-hhHhhccccc
Confidence 9999999998764 3344443333221 11 1111 1112222334555566677666667765 5777888644
No 37
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.85 E-value=4e-05 Score=83.99 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CCCcHHHHHHHHHHh
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 170 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~~D~~~A~~vA~~l 170 (474)
+.+.+.+.+.+++.+. +.++.+.||||+||+++++++.+.... .++.++++... ...|.+.|+++|+.+
T Consensus 224 ~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~l 294 (697)
T 2vxo_A 224 QNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKKL 294 (697)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHHh
Confidence 4455555566666654 468999999999999999999887421 36888887543 346889999999999
Q ss_pred CCceEEEEeCh
Q 011948 171 GTVHHEFHFTV 181 (474)
Q Consensus 171 g~~h~~i~~~~ 181 (474)
|++|+.+.++.
T Consensus 295 GI~~~vvdi~~ 305 (697)
T 2vxo_A 295 GIQVKVINAAH 305 (697)
T ss_dssp TCCEEEEECHH
T ss_pred CCcEEEecchH
Confidence 99999988753
No 38
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=97.82 E-value=3.4e-05 Score=79.65 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=69.0
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCC--CC-CcHHHHHHHHHHh-----CCceEEEEeChhh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS-PDLKYAKEVADYL-----GTVHHEFHFTVQD 183 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~--~~-~D~~~A~~vA~~l-----g~~h~~i~~~~~~ 183 (474)
++.+++|||+||++++.++.+.. .++.++++... ++ .|...++++|+.+ |++++.+.++...
T Consensus 189 kvlvalSGGvDS~vll~ll~~~G----------~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~ 258 (413)
T 2c5s_A 189 KVMVLLSGGIDSPVAAYLTMKRG----------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQ 258 (413)
T ss_dssp EEEEECCSSSHHHHHHHHHHHBT----------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHH
T ss_pred eEEEEeCCCChHHHHHHHHHHcC----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHHH
Confidence 47899999999999999988743 46777776543 22 3667888899999 8999998865321
Q ss_pred hHHhHHHHHHhhccCCcccccchHHHH-HHHHHHHhCCCcEEEEcCchhhh
Q 011948 184 GIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 184 ~~~~l~~~i~~le~~~~~~i~~~~~~y-~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
.. +..... ....++.+--.+| .+.+.|++.|+..+++|+-.|.+
T Consensus 259 --~~---i~~~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 259 --KT---INKEIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp --HH---HHHHSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred --HH---HHhcCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 11 111111 0001111111233 34566778899999999987765
No 39
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.81 E-value=0.00011 Score=78.53 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHH-HHHHHH
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYA-KEVADY 169 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A-~~vA~~ 169 (474)
+.+.+...+.+++. ..+..+.+.||||+||+++++++.+... .++.++++. +....|...+ +.++++
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~G---------~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIFK---------ERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHhC---------CeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 44444444556555 3367899999999999999999988653 467777764 3334566666 668999
Q ss_pred h-CCceEEEEeCh
Q 011948 170 L-GTVHHEFHFTV 181 (474)
Q Consensus 170 l-g~~h~~i~~~~ 181 (474)
+ |++|+.+.++.
T Consensus 309 l~gi~~~~vd~~~ 321 (556)
T 3uow_A 309 FPDMNITKIDASE 321 (556)
T ss_dssp CTTSEEEEEECHH
T ss_pred cCCCCeEEeccHH
Confidence 9 99999998753
No 40
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.72 E-value=0.00017 Score=74.88 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHHhhccCCCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CC-C-CcHHHHHHHHHHhCCceEEEE
Q 011948 103 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EG-S-PDLKYAKEVADYLGTVHHEFH 178 (474)
Q Consensus 103 V~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~-~-~D~~~A~~vA~~lg~~h~~i~ 178 (474)
+.+.+....++.+.+|||.||++++.++.+..... .+.++.++++.. .. + .|..+++++|+.+|++++.+.
T Consensus 6 l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 33445556789999999999999999998754320 024677777643 32 2 367899999999999999987
Q ss_pred eChhhhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 179 FTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 179 ~~~~~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
++.... ..+. ...+-...|.+...+.+ ++.++++|+-+|..
T Consensus 81 ~~~~~~------------~~~~-e~~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD~ 121 (433)
T 1ni5_A 81 VQLAQE------------GLGI-EAQARQARYQAFARTLL-PGEVLVTAQHLDDQ 121 (433)
T ss_dssp CCCCCS------------SSTT-TTHHHHHHHHHHHHTCC-TTEEEECCCCHHHH
T ss_pred ecCCCC------------CCCH-HHHHHHHHHHHHHHHHh-hCCeEEeeccchHH
Confidence 764210 0000 00011223433333332 48899999988754
No 41
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.45 E-value=0.00042 Score=66.50 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=66.7
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecC--CCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhH
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 188 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~--~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l 188 (474)
.++.+.+|||.||++++.++.+.. .++..+++.. ....+..+++++++.+|++++.+..+.. ...+
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~--~~~~ 113 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 113 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC--HHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC--HHHH
Confidence 479999999999999999998765 3566666543 2223578999999999999887765421 1111
Q ss_pred HHHHHhhccCCc-cccc--ch-HH-HHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 189 EEVIYHVETYDV-TTIR--AS-TP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 189 ~~~i~~le~~~~-~~i~--~~-~~-~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
.. ..-..+.. +..+ .. +. ...+.+.+++.|+.+++||.=.|+-
T Consensus 114 ~~--~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds 161 (252)
T 2o8v_A 114 EA--RYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 161 (252)
T ss_dssp HH--HTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTT
T ss_pred HH--HcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccc
Confidence 10 00000100 0000 00 00 0123456677788899999988873
No 42
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.45 E-value=0.0002 Score=68.15 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=43.4
Q ss_pred CEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEe--ecCC------CCCcHHHHHHHHHHhCCceEEEEeCh
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLE------GSPDLKYAKEVADYLGTVHHEFHFTV 181 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tft--ig~~------~~~D~~~A~~vA~~lg~~h~~i~~~~ 181 (474)
.+.+++|||.||++.+.++.+.. .++.+.. ++.. ...+.+.|+++|+.+|++|+.+.++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999999988887654 3454443 2221 12456789999999999999998764
No 43
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.45 E-value=0.00052 Score=68.43 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=66.9
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCCceEEEEeChhhhHHhH
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 188 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~~h~~i~~~~~~~~~~l 188 (474)
..+.+.+|||.||++++.++.+..... ..++..+++. .....+..+++++++.+|++++.+..... ..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~-- 116 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA-- 116 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh--
Confidence 478999999999999999998875321 1356666654 33234678999999999999887764321 10
Q ss_pred HHHHHhhccCCcccccch-HH-HHHHHHHHHhCCCcEEEEcCchhhhc
Q 011948 189 EEVIYHVETYDVTTIRAS-TP-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (474)
Q Consensus 189 ~~~i~~le~~~~~~i~~~-~~-~y~l~~~a~~~G~~vvLsG~GgDElf 234 (474)
.....+....-... .. ...+.+.+++.|.+++++|.=.||.-
T Consensus 117 ----~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 ----QGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp -------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred ----cCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 00001110000011 00 11345566677899999999888854
No 44
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=97.25 E-value=0.00029 Score=81.73 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=54.7
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCc-ce--EeCCCcEEEec
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEH-FE--AFPPGHLYSSK 68 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~-I~--~lpPG~~l~~~ 68 (474)
.++|.|++++-|. +.++++|||.|.|||.|+...|+.+++|||..+|--.... ++ .|.||..+.++
T Consensus 326 ~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 326 PWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp CCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 3789999999775 7999999999999999998767789999998888443333 33 89999998775
No 45
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00073 Score=65.19 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=68.1
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCC----ceEEEEeChhhh
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGT----VHHEFHFTVQDG 184 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~----~h~~i~~~~~~~ 184 (474)
.++.+.+|||.||++++.++.+...+ ..++..+++. +....+.++++++++.+|+ +++.+......-
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 37999999999999999999887631 0245666653 3323467899999999999 888776542110
Q ss_pred HHhHHHHHHhhccCCcccccch-HH-HHHHHHHHHhCCCcEEEEcCchhhh
Q 011948 185 IDAIEEVIYHVETYDVTTIRAS-TP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (474)
Q Consensus 185 ~~~l~~~i~~le~~~~~~i~~~-~~-~y~l~~~a~~~G~~vvLsG~GgDEl 233 (474)
.+.+.+. +....+.....+.. +- ...+.+.+++.|++++++|.=.||-
T Consensus 115 ~~~~~~~-~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASK-YGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHH-HCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHH-hCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 1111110 00000000000000 00 1123456777899999999999984
No 46
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.21 E-value=0.00056 Score=67.70 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=57.4
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeecCCCCCcHHHHHHHHHHh-------CCceEEEE-eChh
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL-------GTVHHEFH-FTVQ 182 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig~~~~~D~~~A~~vA~~l-------g~~h~~i~-~~~~ 182 (474)
..+.++||| +||++.+.++.+.+ ..+.+.++.. +..+...|+++|+.| +++++.+. +..
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G----------~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~- 246 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG----------VEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDR- 246 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT----------CEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHH-
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC----------CeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHH-
Confidence 357899999 99999998887754 5677777662 234677899999999 66666554 211
Q ss_pred hhHHhHHHHHHhhccCCcccccchHHHHHHHHHHHhCCCcEEEEcCchhh
Q 011948 183 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (474)
Q Consensus 183 ~~~~~l~~~i~~le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG~GgDE 232 (474)
. + +.|.+.|+..+.||+-++.
T Consensus 247 ----~----------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 247 ----V----------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp ----H----------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred ----H----------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 4566679999999997654
No 47
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=97.20 E-value=0.00047 Score=80.18 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=54.7
Q ss_pred CcceEEEEEEEECCCCEEEEEeccCCCceEEEEEecCceEEEecCccchhcccCc-ce--EeCCCcEEEec
Q 011948 1 MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEH-FE--AFPPGHLYSSK 68 (474)
Q Consensus 1 ~L~G~FAf~i~D~~~~~l~laRD~~G~kPLyy~~~~~g~~~faSeik~L~~~~~~-I~--~lpPG~~l~~~ 68 (474)
.++|.|++++-|. +.++++|||.|.|||.|+...|+.+++|||..+|--.... ++ .|.||..+.++
T Consensus 325 ~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 325 PWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp CCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcchheeeccCCCCCeEEEEE
Confidence 3689999999886 7999999999999999988766789999998888433222 34 89999998775
No 48
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=96.85 E-value=0.00097 Score=64.23 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=50.8
Q ss_pred eEEEEEEEECCCCEEEEEec----------cCCCceEEE-------EE---ecCceEEEecCccchhcccCcceEeCCCc
Q 011948 4 GMFSFVLLDTRDNSFIVARD----------AIGITSLYI-------GW---GLDGSIWISSELKGLNDDCEHFEAFPPGH 63 (474)
Q Consensus 4 G~FAf~i~D~~~~~l~laRD----------~~G~kPLyy-------~~---~~~g~~~faSeik~L~~~~~~I~~lpPG~ 63 (474)
|.|+|++.|. .+|+++|| |+|++||.. .. ..++.++||||- |- ..+.++.+|||+
T Consensus 168 G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~--l~-~~~~wr~v~pGe 242 (257)
T 1te5_A 168 GVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LT-DNENWTLQQSGE 242 (257)
T ss_dssp BCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SS-SSSSCEEECTTC
T ss_pred CcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc--cC-CCCCeeEeCCCE
Confidence 8999999886 68999999 999999964 20 113468899993 43 357899999999
Q ss_pred EEEecCCeeE
Q 011948 64 LYSSKSGGLK 73 (474)
Q Consensus 64 ~l~~~~~~~~ 73 (474)
.+.++.+.+.
T Consensus 243 ~v~i~~~~~~ 252 (257)
T 1te5_A 243 WVLWWGGEVL 252 (257)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 9998876553
No 49
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.02 Score=56.45 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=46.0
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhccc----------cc--ccccCcceeEEeecCCC-C-CcHHHHHHHHHHhCCceEE
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGT----------KA--ARQWGTQLHSFCVGLEG-S-PDLKYAKEVADYLGTVHHE 176 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~----------~~--~~~~~~~l~tftig~~~-~-~D~~~A~~vA~~lg~~h~~ 176 (474)
.++.+.+|||.||++++.++.+.+.+. .. ......++..+++.... . ...++++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 369999999999999999887753210 00 00001356677764321 2 3578999999999998876
Q ss_pred EEe
Q 011948 177 FHF 179 (474)
Q Consensus 177 i~~ 179 (474)
+..
T Consensus 134 ~~~ 136 (306)
T 2wsi_A 134 SQR 136 (306)
T ss_dssp CCC
T ss_pred EeC
Confidence 653
No 50
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=95.35 E-value=0.051 Score=52.52 Aligned_cols=59 Identities=8% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCEEEecCCcccHHHHHHHHHHhhcccccccccCcceeEEeec--CCCCCcHHHHHHHHHHhCCceEEEEeC
Q 011948 111 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHFT 180 (474)
Q Consensus 111 ~pvgv~LSGGLDSS~Iaala~~~~~~~~~~~~~~~~l~tftig--~~~~~D~~~A~~vA~~lg~~h~~i~~~ 180 (474)
.++.+.+| |.||++++.++.+.. .++..+++. +....+..+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57999999 999999999998764 356666654 332245789999999999998877654
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=89.93 E-value=0.58 Score=45.83 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=40.6
Q ss_pred CEEEecCCcccHHHHHHHHHHhhccc--------cc---cccc-CcceeEEeecCCC-CCc-HHHHHHHHHHhCCceEEE
Q 011948 112 PFGVLLSGGLDSSLVASITARHLAGT--------KA---ARQW-GTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEF 177 (474)
Q Consensus 112 pvgv~LSGGLDSS~Iaala~~~~~~~--------~~---~~~~-~~~l~tftig~~~-~~D-~~~A~~vA~~lg~~h~~i 177 (474)
.+.+..|||.||++++-++.+.+.+. +. .... ..++..+.+...- -+| .++..++++++|++.+.+
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~ 139 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYES 139 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEEC
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence 48999999999999999887753110 00 0000 0246666654321 244 589999999999876544
No 52
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=28.00 E-value=3.8e+02 Score=25.09 Aligned_cols=128 Identities=8% Similarity=0.015 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCcccHHHHHHHHHHhh-cc-cc--cccccCcceeEEeecCCCCCcHHHHHHHHH
Q 011948 93 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHL-AG-TK--AARQWGTQLHSFCVGLEGSPDLKYAKEVAD 168 (474)
Q Consensus 93 ~~lr~~L~~AV~~rl~sd~pvgv~LSGGLDSS~Iaala~~~~-~~-~~--~~~~~~~~l~tftig~~~~~D~~~A~~vA~ 168 (474)
.++.+.+++.+.+.+..+..-.++.+||..+..++..+.... .. .. .....+..+.+..-.+. . ....++
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~---~---~~~~~~ 141 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHF---S---FEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCT---H---HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchh---H---HHHHHH
Confidence 566777777788777655545678888888765544333221 00 00 00000123333222221 1 344566
Q ss_pred HhCCceEEEEeChhh--hHHhHHHHHHh-------hccCCcccccchHHHHHHHHHHHhCCCcEEEEc
Q 011948 169 YLGTVHHEFHFTVQD--GIDAIEEVIYH-------VETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (474)
Q Consensus 169 ~lg~~h~~i~~~~~~--~~~~l~~~i~~-------le~~~~~~i~~~~~~y~l~~~a~~~G~~vvLsG 227 (474)
.+|.+...+.++.+. -++.+.+.+.. ++.+..++-. ..+.-.+.+.+++.|+-+++.+
T Consensus 142 ~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~-~~~l~~i~~l~~~~~~~li~De 208 (397)
T 3f9t_A 142 MMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGT-IDNIEELSKIAKENNIYIHVDA 208 (397)
T ss_dssp HHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCC-BCCHHHHHHHHHHHTCEEEEEC
T ss_pred HcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCC-CCCHHHHHHHHHHhCCeEEEEc
Confidence 779887777665321 13344444332 1222221111 1234456777888888888754
No 53
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=21.12 E-value=1.8e+02 Score=25.35 Aligned_cols=74 Identities=8% Similarity=-0.027 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhc--cCCCEEEecCCcccHHH-HHHHHHHhhcccccccccCcceeEEeecCCC---------------
Q 011948 95 LRQAFENAVIKRLM--TDVPFGVLLSGGLDSSL-VASITARHLAGTKAARQWGTQLHSFCVGLEG--------------- 156 (474)
Q Consensus 95 lr~~L~~AV~~rl~--sd~pvgv~LSGGLDSS~-Iaala~~~~~~~~~~~~~~~~l~tftig~~~--------------- 156 (474)
+...|..+...-.. ...++.++||-|.+..- +...+..... ..+..|++|+..
T Consensus 94 l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~---------~~i~v~~igig~~~~~~~~~~g~~~~~ 164 (218)
T 3ibs_A 94 IGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAE---------KGIQVSVLGVGMPEGAPIPVEGTNDYR 164 (218)
T ss_dssp HHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHT---------TTEEEEEEEESCTTCEECBCTTSSCBC
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHh---------cCCEEEEEEecCCCCCcccccCCCcee
Confidence 55566555543211 23467789999987543 3333333321 244445544422
Q ss_pred ----------CCcHHHHHHHHHHhCCceEEE
Q 011948 157 ----------SPDLKYAKEVADYLGTVHHEF 177 (474)
Q Consensus 157 ----------~~D~~~A~~vA~~lg~~h~~i 177 (474)
..+...-+++|+..|-.+..+
T Consensus 165 ~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~ 195 (218)
T 3ibs_A 165 RDREGNVIVTRLNEGMCQEIAKDGKGIYVRV 195 (218)
T ss_dssp BCTTSCBCEECCCHHHHHHHHHHTEEEEEEE
T ss_pred EcCCCCEeEecCCHHHHHHHHHhcCCEEEEC
Confidence 235677888999887765444
No 54
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=20.84 E-value=1.1e+02 Score=18.46 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=12.6
Q ss_pred ceEEEEEEEECCCCE-EEEE
Q 011948 3 DGMFSFVLLDTRDNS-FIVA 21 (474)
Q Consensus 3 ~G~FAf~i~D~~~~~-l~la 21 (474)
|=-|.|+|+|..++. |+++
T Consensus 7 drPFlf~I~~~~t~~iLF~G 26 (31)
T 1hle_B 7 DHPFIFFIRHNPSANILFLG 26 (31)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred eCCEEEEEEECCCCcEEEEE
Confidence 445888888887764 3443
No 55
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=20.50 E-value=1.1e+02 Score=19.14 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=12.8
Q ss_pred ceEEEEEEEECCCCE-EEEE
Q 011948 3 DGMFSFVLLDTRDNS-FIVA 21 (474)
Q Consensus 3 ~G~FAf~i~D~~~~~-l~la 21 (474)
|=-|.|+|+|..++. ||++
T Consensus 8 drPFlf~I~~~~t~~iLF~G 27 (35)
T 2xn6_B 8 DRSFMLLILERSTRSILFLG 27 (35)
T ss_dssp CBCEEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEEECCCCcEEEEE
Confidence 456888888887764 3444
No 56
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=20.30 E-value=1.2e+02 Score=18.89 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=10.5
Q ss_pred ceEEEEEEEECCCCE
Q 011948 3 DGMFSFVLLDTRDNS 17 (474)
Q Consensus 3 ~G~FAf~i~D~~~~~ 17 (474)
|=-|.|+|+|..++.
T Consensus 8 drPFlf~I~~~~t~~ 22 (34)
T 2h4p_B 8 DHPFHFFIRHNKSKT 22 (34)
T ss_dssp CSCEEEEEEETTTTE
T ss_pred cCCEEEEEEECCCCe
Confidence 445788888877664
Done!