Query 011951
Match_columns 474
No_of_seqs 164 out of 207
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a98_B Engulfment and cell mot 28.4 28 0.00097 32.7 2.5 16 164-179 184-199 (203)
2 1gp8_A Protein (scaffolding pr 19.1 1E+02 0.0036 22.0 3.3 29 329-357 6-35 (40)
3 1gu4_A CAAT/enhancer binding p 15.0 1.5E+02 0.0051 23.9 3.8 48 10-57 23-74 (78)
4 3pvi_A Protein (pvuii endonucl 14.9 75 0.0026 28.5 2.2 23 436-462 110-133 (157)
5 2o3l_A Hypothetical protein; s 14.6 1.1E+02 0.0037 25.1 2.9 30 325-354 35-64 (85)
6 2o4t_A BH3976 protein; LEFT-ha 13.9 1.2E+02 0.0042 25.5 3.1 30 325-354 32-61 (100)
7 2hh6_A BH3980 protein; 1017660 10.9 1.7E+02 0.0058 25.2 3.1 30 325-354 51-80 (113)
8 1t2k_D Cyclic-AMP-dependent tr 10.7 5.1E+02 0.017 19.1 5.5 27 10-36 9-35 (61)
9 1ji8_A Dissimilatory siroheme- 10.6 82 0.0028 27.1 1.1 16 207-222 36-52 (111)
10 1nvp_B Transcription initiatio 9.1 1.6E+02 0.0056 22.3 2.1 17 446-462 34-51 (57)
No 1
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=28.39 E-value=28 Score=32.66 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCC
Q 011951 164 FEDSPLPPETQPWDYF 179 (474)
Q Consensus 164 ~~ppp~PP~~s~WDFF 179 (474)
-.|||.||..+.||||
T Consensus 184 ~~~ppip~~P~~~dF~ 199 (203)
T 3a98_B 184 DAPPPIPKEPSNYDFV 199 (203)
T ss_dssp SSCCCCCCCCSCCCCS
T ss_pred CCCCCCCcCCCCccee
Confidence 3556677777899999
No 2
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=19.10 E-value=1e+02 Score=21.98 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHhcCC-chhhhhhcc
Q 011951 329 FFSSMKDIELLFIKASDSGK-EVPRMLEAN 357 (474)
Q Consensus 329 l~ev~keIe~~F~rA~~sg~-eVs~mLE~~ 357 (474)
..+-|.+||.|.--||.-|+ |-.+|||.-
T Consensus 6 ~~d~I~aiEQqiyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 6 SAANKDAIRKQMDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 35789999999999999997 678888863
No 3
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=14.97 E-value=1.5e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=33.8
Q ss_pred chHHHHHhHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhhc
Q 011951 10 EDKALQLCRERKKFVRQALDGRCSLAATH----VMYVQSLRNTGTALRKFVE 57 (474)
Q Consensus 10 ~~~av~~CkeRk~~~k~Av~~R~~lAaaH----~~Y~~SL~~~g~aL~~f~~ 57 (474)
+.+||..||+.++.-.+.+..|...-..- ..-|..|+.--..|+.++-
T Consensus 23 NN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 23 NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988887654433 3345556665556665554
No 4
>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA, hydrolase/DNA complex; HET: DNA; 1.59A {Proteus vulgaris} SCOP: c.52.1.6 PDB: 1eyu_A* 1f0o_A 1pvi_A* 1ni0_A 1k0z_A 1h56_A 1pvu_A 2pvi_A*
Probab=14.91 E-value=75 Score=28.50 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=16.7
Q ss_pred cccccccccchhhHHHHHHH-HHHHHHH
Q 011951 436 FDSIHMISSSHASTLDRLYA-WERKLYD 462 (474)
Q Consensus 436 ~ee~~m~sgShsSTLdRLya-WEkKLYd 462 (474)
.+-+||. -.-|+.+|. ||+|+|+
T Consensus 110 ~~iY~l~----P~~lE~~y~~WE~kw~~ 133 (157)
T 3pvi_A 110 EAIYRLE----PKDLEFYYDKWERKWYS 133 (157)
T ss_dssp EEEEEEC----HHHHHHHHHHHHHHHHH
T ss_pred hhhhhcC----HHHhHHHHHHHHHHHHh
Confidence 3445555 567888884 9999996
No 5
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=14.58 E-value=1.1e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 011951 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (474)
Q Consensus 325 ~~rdl~ev~keIe~~F~rA~~sg~eVs~mL 354 (474)
..+++.+++.+|=++|+.|+.-|+.|-.++
T Consensus 35 ~g~~~~~il~~lldlfEeaaa~G~~v~eV~ 64 (85)
T 2o3l_A 35 NGMDMLHIQYELIDLFEAGAAEGRQVLDIT 64 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 446788999999999999999999987765
No 6
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=13.88 E-value=1.2e+02 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 011951 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (474)
Q Consensus 325 ~~rdl~ev~keIe~~F~rA~~sg~eVs~mL 354 (474)
..+++.+++.+|=++|+.|+..|+.|-.++
T Consensus 32 ~g~~~~~il~~lldlfEeaaa~Gk~v~eV~ 61 (100)
T 2o4t_A 32 ELNEGIGLLSEILGFFEEGAAAGKGVLDVT 61 (100)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 446788999999999999999999987765
No 7
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=10.93 E-value=1.7e+02 Score=25.21 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=26.2
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 011951 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (474)
Q Consensus 325 ~~rdl~ev~keIe~~F~rA~~sg~eVs~mL 354 (474)
..+++.+++.+|=++|+.|+.-|+.|-.++
T Consensus 51 ~g~~~~~il~~lldLfEeaaa~G~~v~eV~ 80 (113)
T 2hh6_A 51 DWQDTKRIFGGILDLFEEGAAEGKKVTDLT 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCchHHHh
Confidence 346788999999999999999999998775
No 8
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=10.69 E-value=5.1e+02 Score=19.14 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=20.1
Q ss_pred chHHHHHhHHHHHHHHHHHHhhHHHHH
Q 011951 10 EDKALQLCRERKKFVRQALDGRCSLAA 36 (474)
Q Consensus 10 ~~~av~~CkeRk~~~k~Av~~R~~lAa 36 (474)
+-.|.+.||+||.---+-+..+...-.
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~~~~L~ 35 (61)
T 1t2k_D 9 NRAAASRSRQKRKVWVQSLEKKAEDLS 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999887777777755433
No 9
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=10.61 E-value=82 Score=27.12 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=12.2
Q ss_pred hHhh-hhcCCCCchhhh
Q 011951 207 RRLR-EEEGIPELEDEE 222 (474)
Q Consensus 207 revR-EeEGIPELEeE~ 222 (474)
+.+- ++|||++|-|+-
T Consensus 36 ~~lA~~~egI~eLTe~H 52 (111)
T 1ji8_A 36 EWLARELEGIQKMTEEH 52 (111)
T ss_dssp HHHHHHHTCCSSCCHHH
T ss_pred HHHHHhcCCchhcCHHH
Confidence 4555 899999998753
No 10
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=9.12 E-value=1.6e+02 Score=22.33 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=13.3
Q ss_pred hhhHHHHHH-HHHHHHHH
Q 011951 446 HASTLDRLY-AWERKLYD 462 (474)
Q Consensus 446 hsSTLdRLy-aWEkKLYd 462 (474)
--+||+-|- .||.||-+
T Consensus 34 de~vL~eLk~~We~KL~~ 51 (57)
T 1nvp_B 34 DEQVLMELKTLWENKLMQ 51 (57)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 488999986 69999953
Done!