Query 011951
Match_columns 474
No_of_seqs 164 out of 207
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 18:38:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011951.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011951hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mwqa_ d.58.4.7 (A:) Hypothet 16.1 25 0.0019 26.8 1.5 23 27-49 15-37 (100)
2 d2o4ta1 a.69.4.1 (A:16-105) Un 14.6 55 0.004 25.0 3.1 30 325-354 30-59 (90)
3 d2o3la1 a.69.4.1 (A:14-95) Hyp 14.0 53 0.0039 24.7 2.9 30 325-354 34-63 (82)
4 d1wiga1 g.39.1.3 (A:1-32) Acti 13.8 21 0.0015 22.6 0.3 14 351-364 17-30 (32)
5 d1fpwa_ a.39.1.5 (A:) Frequeni 13.2 37 0.0027 27.9 1.8 19 1-19 1-19 (190)
6 d1nvpb_ a.32.1.1 (B:) Large ch 12.4 52 0.0038 22.2 2.1 15 446-460 27-42 (43)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 8.8 3.9E+02 0.028 20.2 7.2 41 9-49 85-125 (133)
8 d2je6b2 d.101.1.1 (B:156-241) 7.7 1.2E+02 0.0086 21.9 2.8 20 13-32 66-85 (86)
9 d2odgc1 a.140.1.1 (C:2-47) Inn 7.5 74 0.0054 21.7 1.3 10 456-465 33-42 (46)
10 d1v65a_ a.212.1.1 (A:) hypothe 7.3 54 0.0039 23.8 0.5 16 451-466 23-38 (64)
No 1
>d1mwqa_ d.58.4.7 (A:) Hypothetical protein HI0828 {Haemophilus influenzae [TaxId: 727]}
Probab=16.11 E-value=25 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 011951 27 ALDGRCSLAATHVMYVQSLRNTG 49 (474)
Q Consensus 27 Av~~R~~lAaaH~~Y~~SL~~~g 49 (474)
+.+.|.++-.+|.+|++.|..-|
T Consensus 15 ~~~~R~~~r~~H~~~l~~~~~~g 37 (100)
T d1mwqa_ 15 TLEKRLAVREQHLARLKQLQAEN 37 (100)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHTT
T ss_pred cHHHHHHhhHHHHHHHHHHHhcC
Confidence 46789999999999999988755
No 2
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=14.64 E-value=55 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 011951 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (474)
Q Consensus 325 ~~rdl~ev~keIe~~F~rA~~sg~eVs~mL 354 (474)
..+++.+++.+|=++|+.|..-|+.|-.++
T Consensus 30 ~~~~~~~il~dil~lleea~~~G~~v~ev~ 59 (90)
T d2o4ta1 30 ELNEGIGLLSEILGFFEEGAAAGKGVLDVT 59 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 345788999999999999999999998775
No 3
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=14.02 E-value=53 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCCchhhhh
Q 011951 325 ASKDFFSSMKDIELLFIKASDSGKEVPRML 354 (474)
Q Consensus 325 ~~rdl~ev~keIe~~F~rA~~sg~eVs~mL 354 (474)
..+++.+++.+|=++|+.|..-|+.|-.++
T Consensus 34 ~~~~~~~il~dil~l~eea~~~G~~v~ev~ 63 (82)
T d2o3la1 34 NGMDMLHIQYELIDLFEAGAAEGRQVLDIT 63 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 346888999999999999999999998775
No 4
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.84 E-value=21 Score=22.64 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=11.8
Q ss_pred hhhhhccccCCCcc
Q 011951 351 PRMLEANKLHFRPI 364 (474)
Q Consensus 351 s~mLE~~k~~y~~~ 364 (474)
-++||+|--+|||.
T Consensus 17 GkVLEAG~khYHP~ 30 (32)
T d1wiga1 17 GRVLEAGEKHYHPS 30 (32)
T ss_dssp SCCBCCSSCCBCTT
T ss_pred hhhhhccccccCCC
Confidence 36899999999984
No 5
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.17 E-value=37 Score=27.87 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCCCcccccchHHHHHhHH
Q 011951 1 MGVSSSKLEEDKALQLCRE 19 (474)
Q Consensus 1 MGc~~Sk~d~~~av~~Cke 19 (474)
||+..||+..++.-.|++.
T Consensus 1 MG~~~S~l~~e~l~~l~~~ 19 (190)
T d1fpwa_ 1 MGAKTSKLSKDDLTCLKQS 19 (190)
T ss_dssp CCCCSCCSTTHHHHHHTTT
T ss_pred CCCccCCCCHHHHHHHHHH
Confidence 9999999999887777764
No 6
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.45 E-value=52 Score=22.18 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=12.2
Q ss_pred hhhHHHHHH-HHHHHH
Q 011951 446 HASTLDRLY-AWERKL 460 (474)
Q Consensus 446 hsSTLdRLy-aWEkKL 460 (474)
--+||+.|- .||.||
T Consensus 27 De~vL~eLk~~We~KL 42 (43)
T d1nvpb_ 27 DEQVLMELKTLWENKL 42 (43)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 378899886 599998
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.77 E-value=3.9e+02 Score=20.21 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=31.2
Q ss_pred cchHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011951 9 EEDKALQLCRERKKFVRQALDGRCSLAATHVMYVQSLRNTG 49 (474)
Q Consensus 9 d~~~av~~CkeRk~~~k~Av~~R~~lAaaH~~Y~~SL~~~g 49 (474)
+-++|+..|+.|.+.++..++....-...-.+.+..|...-
T Consensus 85 ~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~ 125 (133)
T d1fxkc_ 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999998877666666666666655443
No 8
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.72 E-value=1.2e+02 Score=21.87 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHhhH
Q 011951 13 ALQLCRERKKFVRQALDGRC 32 (474)
Q Consensus 13 av~~CkeRk~~~k~Av~~R~ 32 (474)
|..-|++=..+||+|+..||
T Consensus 66 a~~~~~~I~~~~~e~l~~ry 85 (86)
T d2je6b2 66 AVKGINIIYNLEREALKSKY 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34445555667888888887
No 9
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.55 E-value=74 Score=21.67 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=6.8
Q ss_pred HHHHHHHHhh
Q 011951 456 WERKLYDEVK 465 (474)
Q Consensus 456 WEkKLYdEVK 465 (474)
.|||||+=.+
T Consensus 33 yekkl~e~~~ 42 (46)
T d2odgc1 33 YEKKIFEYET 42 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5888887443
No 10
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.29 E-value=54 Score=23.83 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 011951 451 DRLYAWERKLYDEVKV 466 (474)
Q Consensus 451 dRLyaWEkKLYdEVKa 466 (474)
..|--|+|.||.+|.-
T Consensus 23 ~~Ld~~Qk~LyrdVm~ 38 (64)
T d1v65a_ 23 DLLDSSQKRLYEEVML 38 (64)
T ss_dssp HTSCHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHhHH
Confidence 3466899999999974
Done!