Query 011953
Match_columns 474
No_of_seqs 310 out of 2792
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480 DNA replication licens 100.0 6.3E-82 1.4E-86 631.2 35.3 440 7-473 22-507 (764)
2 COG1241 MCM2 Predicted ATPase 100.0 1.9E-79 4.2E-84 638.4 37.9 414 38-474 31-449 (682)
3 KOG0479 DNA replication licens 100.0 1.4E-78 3E-83 599.9 34.4 444 7-473 11-463 (818)
4 KOG0477 DNA replication licens 100.0 1.5E-79 3.3E-84 610.7 21.7 437 9-473 161-611 (854)
5 KOG0481 DNA replication licens 100.0 1.7E-77 3.6E-82 584.8 33.5 445 8-470 27-490 (729)
6 KOG0482 DNA replication licens 100.0 1.4E-78 3.1E-83 591.7 18.4 451 5-472 9-503 (721)
7 KOG0478 DNA replication licens 100.0 9.3E-78 2E-82 605.5 23.4 438 6-473 130-591 (804)
8 PTZ00111 DNA replication licen 100.0 1.1E-74 2.4E-79 615.0 42.0 433 21-474 123-623 (915)
9 smart00350 MCM minichromosome 100.0 6.4E-65 1.4E-69 531.3 35.5 350 114-474 3-366 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 2.5E-37 5.5E-42 306.5 7.5 172 303-474 13-187 (331)
11 PF01078 Mg_chelatase: Magnesi 99.9 3.3E-22 7.1E-27 181.3 11.9 139 313-466 2-165 (206)
12 COG0606 Predicted ATPase with 99.8 4.8E-19 1E-23 176.3 6.7 140 313-467 178-343 (490)
13 PRK13407 bchI magnesium chelat 99.7 1.4E-17 3.1E-22 164.1 11.0 142 313-466 7-186 (334)
14 TIGR00368 Mg chelatase-related 99.7 7.8E-17 1.7E-21 167.1 9.5 139 314-467 192-355 (499)
15 CHL00081 chlI Mg-protoporyphyr 99.7 1.1E-16 2.4E-21 158.1 9.1 144 312-467 15-203 (350)
16 TIGR02030 BchI-ChlI magnesium 99.7 2.5E-16 5.5E-21 155.6 11.2 142 313-466 3-189 (337)
17 PF07726 AAA_3: ATPase family 99.7 5.2E-16 1.1E-20 129.4 10.3 109 349-462 1-113 (131)
18 TIGR02442 Cob-chelat-sub cobal 99.6 5.5E-16 1.2E-20 166.6 11.1 142 313-466 3-184 (633)
19 PRK09862 putative ATP-dependen 99.6 2.9E-16 6.4E-21 162.0 8.3 139 314-467 191-354 (506)
20 COG1222 RPT1 ATP-dependent 26S 99.6 2.2E-16 4.8E-21 151.3 5.9 115 343-469 181-307 (406)
21 COG1239 ChlI Mg-chelatase subu 99.6 1.1E-15 2.3E-20 150.5 9.6 145 311-467 14-203 (423)
22 PF14551 MCM_N: MCM N-terminal 99.6 8.5E-16 1.8E-20 130.4 5.0 111 11-132 3-121 (121)
23 PF05496 RuvB_N: Holliday junc 99.6 6.1E-15 1.3E-19 134.8 10.2 136 312-466 22-163 (233)
24 TIGR02031 BchD-ChlD magnesium 99.6 5.4E-15 1.2E-19 157.3 10.5 131 320-462 1-137 (589)
25 PF07728 AAA_5: AAA domain (dy 99.6 4.5E-15 9.8E-20 129.2 6.8 115 349-463 1-125 (139)
26 COG0714 MoxR-like ATPases [Gen 99.6 1.5E-14 3.3E-19 144.3 11.5 141 306-461 16-163 (329)
27 TIGR01650 PD_CobS cobaltochela 99.5 5.9E-14 1.3E-18 136.6 13.1 120 348-467 65-193 (327)
28 COG3829 RocR Transcriptional r 99.5 1.4E-14 2.9E-19 146.5 7.3 140 309-461 240-390 (560)
29 COG3604 FhlA Transcriptional r 99.5 1.2E-14 2.5E-19 145.1 6.6 133 315-461 224-367 (550)
30 PRK13531 regulatory ATPase Rav 99.5 3.8E-14 8.3E-19 143.9 10.3 138 306-462 12-157 (498)
31 PF00158 Sigma54_activat: Sigm 99.5 8E-15 1.7E-19 131.2 4.7 113 347-461 22-143 (168)
32 KOG0733 Nuclear AAA ATPase (VC 99.5 4E-15 8.6E-20 150.7 2.6 154 312-469 188-346 (802)
33 KOG0736 Peroxisome assembly fa 99.5 1.1E-14 2.3E-19 151.1 5.2 146 313-468 671-827 (953)
34 KOG0738 AAA+-type ATPase [Post 99.5 9.3E-15 2E-19 141.1 4.0 136 313-468 211-368 (491)
35 KOG0737 AAA+-type ATPase [Post 99.5 2.8E-15 6.1E-20 144.5 -0.3 145 313-468 91-247 (386)
36 PRK05342 clpX ATP-dependent pr 99.5 3.7E-14 7.9E-19 144.0 5.5 160 307-466 64-248 (412)
37 KOG0739 AAA+-type ATPase [Post 99.4 4.9E-14 1.1E-18 131.7 4.5 139 313-469 132-286 (439)
38 COG2204 AtoC Response regulato 99.4 1.7E-13 3.7E-18 138.8 8.1 139 311-461 138-285 (464)
39 TIGR02640 gas_vesic_GvpN gas v 99.4 5.2E-13 1.1E-17 128.7 10.1 115 348-462 22-161 (262)
40 PRK13406 bchD magnesium chelat 99.4 4E-13 8.8E-18 141.8 9.9 133 319-462 8-146 (584)
41 PHA02244 ATPase-like protein 99.4 9E-13 1.9E-17 129.7 11.4 111 347-462 119-231 (383)
42 KOG0733 Nuclear AAA ATPase (VC 99.4 1.6E-13 3.6E-18 139.1 5.6 138 314-468 511-663 (802)
43 TIGR00382 clpX endopeptidase C 99.4 2.8E-13 6.2E-18 136.8 6.9 160 306-466 69-256 (413)
44 TIGR02902 spore_lonB ATP-depen 99.4 2E-12 4.2E-17 136.4 12.8 144 313-468 64-250 (531)
45 KOG0734 AAA+-type ATPase conta 99.4 2E-13 4.3E-18 136.5 4.7 144 309-470 299-457 (752)
46 COG1223 Predicted ATPase (AAA+ 99.4 8.6E-14 1.9E-18 127.8 1.9 143 309-469 116-271 (368)
47 KOG0730 AAA+-type ATPase [Post 99.4 1.1E-13 2.4E-18 142.1 1.7 142 312-468 432-586 (693)
48 COG2255 RuvB Holliday junction 99.4 1.4E-12 3.1E-17 121.7 7.9 131 312-465 24-164 (332)
49 KOG0652 26S proteasome regulat 99.3 4.9E-13 1.1E-17 122.9 3.7 142 315-468 172-326 (424)
50 COG1221 PspF Transcriptional r 99.3 1.1E-12 2.4E-17 130.7 6.1 143 307-461 71-223 (403)
51 COG1219 ClpX ATP-dependent pro 99.3 3.1E-13 6.7E-18 127.6 1.4 157 306-466 53-237 (408)
52 TIGR02974 phageshock_pspF psp 99.3 4.3E-12 9.3E-17 126.1 8.1 113 347-461 22-143 (329)
53 COG2256 MGS1 ATPase related to 99.3 1.6E-12 3.5E-17 126.9 3.8 108 314-439 24-134 (436)
54 KOG0727 26S proteasome regulat 99.3 1.1E-12 2.4E-17 120.0 2.1 114 344-469 186-311 (408)
55 PRK15424 propionate catabolism 99.2 1.3E-11 2.7E-16 129.3 8.0 138 312-461 217-372 (538)
56 PF07724 AAA_2: AAA domain (Cd 99.2 5.1E-12 1.1E-16 113.5 3.6 112 347-462 3-130 (171)
57 PRK11034 clpA ATP-dependent Cl 99.2 2.2E-11 4.7E-16 132.4 8.9 150 307-461 451-607 (758)
58 KOG2004 Mitochondrial ATP-depe 99.2 1.5E-11 3.2E-16 127.2 6.6 146 310-465 407-567 (906)
59 CHL00181 cbbX CbbX; Provisiona 99.2 9.2E-12 2E-16 121.3 3.7 136 306-461 15-170 (287)
60 PRK11608 pspF phage shock prot 99.2 4.1E-11 8.9E-16 119.1 8.0 113 347-461 29-150 (326)
61 TIGR02329 propionate_PrpR prop 99.2 3.3E-11 7.3E-16 126.2 7.6 140 311-462 209-358 (526)
62 COG0466 Lon ATP-dependent Lon 99.2 1.6E-11 3.4E-16 127.7 4.9 146 309-463 318-477 (782)
63 KOG0726 26S proteasome regulat 99.2 7.1E-12 1.5E-16 117.0 1.0 133 322-469 197-341 (440)
64 CHL00195 ycf46 Ycf46; Provisio 99.2 2E-11 4.3E-16 126.5 4.3 137 313-468 227-376 (489)
65 KOG0731 AAA+-type ATPase conta 99.2 2.5E-11 5.4E-16 128.5 5.1 141 311-467 308-465 (774)
66 COG0542 clpA ATP-binding subun 99.1 8E-11 1.7E-15 125.7 8.3 150 307-461 484-643 (786)
67 PLN00020 ribulose bisphosphate 99.1 1.1E-11 2.4E-16 121.1 1.6 121 344-469 145-285 (413)
68 PRK11388 DNA-binding transcrip 99.1 5.9E-11 1.3E-15 128.9 7.3 138 312-461 323-466 (638)
69 TIGR02639 ClpA ATP-dependent C 99.1 9.7E-11 2.1E-15 128.6 8.9 152 306-462 446-604 (731)
70 PRK10787 DNA-binding ATP-depen 99.1 9.8E-11 2.1E-15 128.2 7.8 145 309-462 317-475 (784)
71 PRK00080 ruvB Holliday junctio 99.1 1.2E-10 2.5E-15 116.3 7.8 136 312-467 23-165 (328)
72 TIGR00763 lon ATP-dependent pr 99.1 1.3E-10 2.8E-15 128.3 8.7 150 308-468 314-479 (775)
73 TIGR02880 cbbX_cfxQ probable R 99.1 3.9E-11 8.5E-16 116.9 4.0 137 306-461 14-169 (284)
74 KOG0740 AAA+-type ATPase [Post 99.1 9.6E-12 2.1E-16 124.4 -0.4 146 311-468 150-306 (428)
75 PRK05022 anaerobic nitric oxid 99.1 1.3E-10 2.8E-15 122.6 8.0 137 313-461 186-331 (509)
76 KOG0735 AAA+-type ATPase [Post 99.1 5.2E-11 1.1E-15 123.0 4.7 140 314-469 667-820 (952)
77 TIGR01817 nifA Nif-specific re 99.1 1.3E-10 2.7E-15 123.7 7.8 138 312-461 194-340 (534)
78 PRK03992 proteasome-activating 99.1 2.9E-11 6.3E-16 123.1 2.7 141 314-468 131-286 (389)
79 TIGR00635 ruvB Holliday juncti 99.1 1.7E-10 3.7E-15 114.0 8.1 136 313-467 3-144 (305)
80 PRK15429 formate hydrogenlyase 99.1 2.1E-10 4.6E-15 125.4 9.5 138 313-462 375-521 (686)
81 KOG0729 26S proteasome regulat 99.1 2.8E-11 6.1E-16 111.8 2.2 114 344-469 208-333 (435)
82 TIGR00764 lon_rel lon-related 99.1 2.5E-10 5.5E-15 121.9 9.1 68 400-467 208-285 (608)
83 PTZ00454 26S protease regulato 99.1 5.1E-11 1.1E-15 120.9 3.3 144 313-468 144-300 (398)
84 COG0464 SpoVK ATPases of the A 99.1 5.5E-11 1.2E-15 125.3 2.9 146 312-469 240-395 (494)
85 TIGR02903 spore_lon_C ATP-depe 99.1 3.9E-10 8.4E-15 120.9 9.4 120 310-441 150-297 (615)
86 COG3283 TyrR Transcriptional r 99.1 1.7E-10 3.6E-15 110.8 5.7 113 347-461 227-343 (511)
87 TIGR01243 CDC48 AAA family ATP 99.0 1E-10 2.3E-15 128.7 4.3 142 313-469 452-607 (733)
88 PRK10820 DNA-binding transcrip 99.0 2.3E-10 5.1E-15 120.7 6.5 113 347-461 227-348 (520)
89 TIGR03345 VI_ClpV1 type VI sec 99.0 8.1E-10 1.8E-14 122.4 10.9 151 307-462 559-719 (852)
90 KOG0728 26S proteasome regulat 99.0 8.3E-11 1.8E-15 107.8 2.4 111 344-468 178-302 (404)
91 PF00004 AAA: ATPase family as 99.0 2.5E-11 5.5E-16 104.0 -1.0 105 350-467 1-117 (132)
92 CHL00095 clpC Clp protease ATP 99.0 1E-09 2.2E-14 122.0 11.1 177 281-462 471-662 (821)
93 COG0465 HflB ATP-dependent Zn 99.0 1.2E-10 2.7E-15 121.2 3.3 143 311-469 147-305 (596)
94 TIGR01241 FtsH_fam ATP-depende 99.0 9.9E-11 2.2E-15 123.2 1.9 141 313-469 54-210 (495)
95 TIGR02881 spore_V_K stage V sp 99.0 4.5E-10 9.8E-15 108.4 5.9 115 315-435 7-139 (261)
96 TIGR03346 chaperone_ClpB ATP-d 99.0 1.7E-09 3.8E-14 120.5 11.0 150 307-461 558-717 (852)
97 CHL00206 ycf2 Ycf2; Provisiona 99.0 2.4E-10 5.2E-15 129.8 3.7 117 345-469 1628-1789(2281)
98 TIGR01242 26Sp45 26S proteasom 99.0 1.8E-10 3.9E-15 116.6 2.5 140 315-468 123-277 (364)
99 CHL00176 ftsH cell division pr 99.0 2.2E-10 4.8E-15 122.5 3.0 141 312-468 181-337 (638)
100 smart00763 AAA_PrkA PrkA AAA d 99.0 2.6E-09 5.7E-14 105.4 10.1 59 402-462 229-287 (361)
101 PRK13765 ATP-dependent proteas 99.0 1.9E-09 4.1E-14 115.0 9.4 68 400-467 217-294 (637)
102 TIGR03689 pup_AAA proteasome A 99.0 7.1E-10 1.5E-14 115.0 5.9 62 314-375 182-244 (512)
103 cd00009 AAA The AAA+ (ATPases 98.9 1.3E-09 2.9E-14 94.3 6.5 127 318-463 2-131 (151)
104 TIGR02915 PEP_resp_reg putativ 98.9 1.6E-09 3.5E-14 112.8 7.2 114 347-462 162-284 (445)
105 KOG0745 Putative ATP-dependent 98.9 6.8E-10 1.5E-14 109.1 4.0 115 347-461 226-357 (564)
106 KOG0989 Replication factor C, 98.9 3.3E-09 7.1E-14 100.4 7.7 109 313-435 35-155 (346)
107 KOG0743 AAA+-type ATPase [Post 98.9 2E-09 4.4E-14 107.2 6.6 137 311-469 198-355 (457)
108 PTZ00361 26 proteosome regulat 98.9 3.9E-10 8.4E-15 115.3 1.4 141 314-468 183-338 (438)
109 PRK11331 5-methylcytosine-spec 98.9 4.9E-09 1.1E-13 106.2 9.1 137 313-463 174-336 (459)
110 KOG0651 26S proteasome regulat 98.9 3.7E-09 8E-14 100.1 7.2 107 344-469 163-288 (388)
111 PRK11361 acetoacetate metaboli 98.9 2.9E-09 6.2E-14 111.3 6.9 113 348-462 167-288 (457)
112 PRK10865 protein disaggregatio 98.9 3E-09 6.4E-14 118.3 7.2 175 282-461 531-720 (857)
113 PRK10923 glnG nitrogen regulat 98.9 3.4E-09 7.5E-14 111.1 6.8 113 347-461 161-282 (469)
114 KOG0742 AAA+-type ATPase [Post 98.9 2E-09 4.4E-14 105.1 4.5 105 348-469 385-502 (630)
115 PRK14962 DNA polymerase III su 98.8 5.4E-09 1.2E-13 108.4 7.5 112 313-435 13-143 (472)
116 COG3284 AcoR Transcriptional a 98.8 2.1E-09 4.6E-14 111.1 3.6 113 346-461 335-456 (606)
117 PLN03025 replication factor C 98.8 1.1E-08 2.4E-13 101.6 8.2 123 314-465 13-142 (319)
118 PRK15115 response regulator Gl 98.8 8.5E-09 1.8E-13 107.4 7.0 113 347-461 157-278 (444)
119 KOG2028 ATPase related to the 98.8 3.2E-09 6.9E-14 102.4 3.2 109 315-439 139-252 (554)
120 TIGR01243 CDC48 AAA family ATP 98.8 2.6E-09 5.5E-14 117.8 2.8 142 313-469 177-331 (733)
121 PRK13342 recombination factor 98.8 7.7E-09 1.7E-13 106.4 6.1 106 314-438 12-121 (413)
122 KOG1051 Chaperone HSP104 and r 98.7 3E-08 6.5E-13 107.6 9.1 148 306-461 554-710 (898)
123 PRK14956 DNA polymerase III su 98.7 8E-09 1.7E-13 105.8 3.7 113 312-435 16-147 (484)
124 TIGR01818 ntrC nitrogen regula 98.7 2.4E-08 5.1E-13 104.6 7.2 114 347-462 157-279 (463)
125 COG4650 RtcR Sigma54-dependent 98.7 3.4E-09 7.3E-14 99.5 0.6 114 345-461 206-332 (531)
126 PRK10365 transcriptional regul 98.7 2.5E-08 5.4E-13 103.8 6.9 112 348-461 163-283 (441)
127 PF14532 Sigma54_activ_2: Sigm 98.7 3E-08 6.5E-13 86.0 6.1 86 347-461 21-109 (138)
128 PRK10733 hflB ATP-dependent me 98.6 1.5E-08 3.2E-13 109.6 3.0 110 348-469 186-307 (644)
129 PHA02544 44 clamp loader, smal 98.6 3.3E-08 7.2E-13 98.2 5.3 122 313-465 20-144 (316)
130 KOG0991 Replication factor C, 98.6 1.8E-08 3.9E-13 91.8 2.9 109 311-435 24-139 (333)
131 PF12775 AAA_7: P-loop contain 98.6 2.6E-08 5.7E-13 96.2 4.2 113 347-464 33-161 (272)
132 PRK14949 DNA polymerase III su 98.6 1E-07 2.3E-12 103.4 8.9 111 313-435 15-145 (944)
133 PRK14960 DNA polymerase III su 98.6 4.8E-08 1E-12 103.0 6.1 112 313-435 14-144 (702)
134 TIGR02639 ClpA ATP-dependent C 98.6 4.3E-08 9.3E-13 107.9 5.9 118 312-461 180-320 (731)
135 PRK14961 DNA polymerase III su 98.6 9.6E-08 2.1E-12 96.6 7.5 112 313-435 15-145 (363)
136 PRK13341 recombination factor 98.6 3.2E-08 6.9E-13 107.4 4.3 107 314-438 28-138 (725)
137 PRK12323 DNA polymerase III su 98.6 2.5E-08 5.5E-13 104.8 3.3 112 313-435 15-150 (700)
138 PRK14958 DNA polymerase III su 98.6 4.7E-08 1E-12 102.5 4.9 112 313-435 15-145 (509)
139 PRK07003 DNA polymerase III su 98.6 7.2E-08 1.6E-12 102.8 5.9 112 313-435 15-145 (830)
140 PRK07940 DNA polymerase III su 98.5 9.2E-08 2E-12 97.1 6.1 122 312-435 3-143 (394)
141 KOG0732 AAA+-type ATPase conta 98.5 2.7E-08 5.7E-13 108.8 2.2 144 311-469 262-423 (1080)
142 PRK12402 replication factor C 98.5 2.7E-07 5.8E-12 92.4 8.4 111 312-435 13-151 (337)
143 PRK06645 DNA polymerase III su 98.5 2.9E-07 6.3E-12 96.1 8.1 113 312-435 19-154 (507)
144 PRK14957 DNA polymerase III su 98.5 1.3E-07 2.8E-12 99.3 5.6 112 313-435 15-145 (546)
145 COG5271 MDN1 AAA ATPase contai 98.5 7.6E-07 1.6E-11 99.4 11.2 123 348-470 889-1017(4600)
146 PRK04195 replication factor C 98.5 1.7E-07 3.8E-12 98.3 5.5 112 313-435 13-128 (482)
147 PRK08691 DNA polymerase III su 98.5 2.4E-07 5.2E-12 98.6 6.5 112 313-435 15-145 (709)
148 PRK14964 DNA polymerase III su 98.5 1.7E-07 3.7E-12 97.1 5.3 112 313-435 12-142 (491)
149 PRK14955 DNA polymerase III su 98.4 2.7E-07 5.9E-12 94.4 6.4 111 314-435 16-153 (397)
150 PRK07994 DNA polymerase III su 98.4 1.8E-07 3.8E-12 99.8 5.1 111 313-435 15-145 (647)
151 PRK05896 DNA polymerase III su 98.4 2.8E-07 6E-12 97.1 6.4 112 313-435 15-145 (605)
152 PRK05563 DNA polymerase III su 98.4 6E-07 1.3E-11 95.5 8.9 111 313-435 15-145 (559)
153 KOG0730 AAA+-type ATPase [Post 98.4 1.2E-07 2.7E-12 98.2 3.5 111 343-469 214-337 (693)
154 PRK14969 DNA polymerase III su 98.4 3E-07 6.5E-12 97.1 6.5 111 314-435 16-145 (527)
155 PRK10865 protein disaggregatio 98.4 8.5E-08 1.8E-12 106.8 2.3 47 313-371 177-223 (857)
156 PRK14970 DNA polymerase III su 98.4 1.2E-06 2.7E-11 88.9 10.5 110 313-435 16-134 (367)
157 smart00382 AAA ATPases associa 98.4 1.2E-07 2.6E-12 81.1 2.7 27 348-374 3-29 (148)
158 PRK14959 DNA polymerase III su 98.4 2.8E-07 6.1E-12 97.5 5.5 112 313-435 15-145 (624)
159 PRK14952 DNA polymerase III su 98.4 1E-06 2.2E-11 93.5 9.3 110 313-435 12-144 (584)
160 PRK14963 DNA polymerase III su 98.4 4E-07 8.8E-12 95.3 6.2 112 313-435 13-142 (504)
161 PRK07764 DNA polymerase III su 98.4 3.7E-07 8E-12 100.5 5.9 111 314-435 15-146 (824)
162 PRK00440 rfc replication facto 98.4 4.1E-07 9E-12 90.3 5.6 106 314-435 17-128 (319)
163 TIGR03345 VI_ClpV1 type VI sec 98.4 1.3E-07 2.8E-12 105.1 2.1 49 311-371 184-232 (852)
164 PRK07133 DNA polymerase III su 98.4 8.9E-07 1.9E-11 95.2 8.1 111 314-435 18-144 (725)
165 CHL00095 clpC Clp protease ATP 98.3 3.8E-07 8.3E-12 101.6 4.7 118 313-462 178-317 (821)
166 PRK14965 DNA polymerase III su 98.3 9.8E-07 2.1E-11 94.3 7.5 111 313-435 15-145 (576)
167 PRK14951 DNA polymerase III su 98.3 4.4E-07 9.6E-12 96.6 4.4 112 313-435 15-150 (618)
168 KOG0741 AAA+-type ATPase [Post 98.3 2.2E-08 4.7E-13 100.9 -5.2 107 348-468 257-385 (744)
169 PRK08451 DNA polymerase III su 98.3 1.2E-06 2.6E-11 91.7 7.3 112 313-435 13-143 (535)
170 PRK14948 DNA polymerase III su 98.3 8.6E-07 1.9E-11 95.1 6.3 113 312-435 14-147 (620)
171 PRK11034 clpA ATP-dependent Cl 98.3 4.6E-07 1E-11 99.0 4.1 44 315-370 187-230 (758)
172 PF12774 AAA_6: Hydrolytic ATP 98.3 3.9E-06 8.5E-11 79.0 9.6 104 349-462 34-144 (231)
173 COG5271 MDN1 AAA ATPase contai 98.3 1.3E-06 2.8E-11 97.6 7.0 115 348-462 1544-1665(4600)
174 PRK06305 DNA polymerase III su 98.3 2.5E-06 5.5E-11 88.4 8.6 111 314-435 17-147 (451)
175 TIGR02397 dnaX_nterm DNA polym 98.3 3.6E-06 7.8E-11 84.9 9.4 113 312-435 12-143 (355)
176 PRK14954 DNA polymerase III su 98.3 1E-06 2.3E-11 94.0 5.6 111 313-435 15-153 (620)
177 TIGR00390 hslU ATP-dependent p 98.2 1.2E-06 2.6E-11 88.0 5.5 73 306-379 4-79 (441)
178 PRK14950 DNA polymerase III su 98.2 2.3E-06 5.1E-11 91.8 7.8 112 313-435 15-146 (585)
179 PRK06647 DNA polymerase III su 98.2 4.7E-06 1E-10 88.5 10.0 110 314-435 16-145 (563)
180 COG0470 HolB ATPase involved i 98.2 1.2E-06 2.6E-11 87.2 5.0 124 315-462 2-149 (325)
181 PRK09112 DNA polymerase III su 98.2 2.1E-06 4.5E-11 86.0 6.7 50 312-372 21-70 (351)
182 PRK09111 DNA polymerase III su 98.2 1.5E-06 3.3E-11 92.7 5.7 112 313-435 23-158 (598)
183 KOG0744 AAA+-type ATPase [Post 98.2 4.7E-07 1E-11 86.5 1.7 110 343-467 173-312 (423)
184 PRK14953 DNA polymerase III su 98.2 2.5E-06 5.3E-11 89.2 6.4 112 313-435 15-145 (486)
185 TIGR03346 chaperone_ClpB ATP-d 98.2 6.4E-07 1.4E-11 100.2 2.1 47 313-371 172-218 (852)
186 PF00910 RNA_helicase: RNA hel 98.1 2.3E-06 5E-11 70.7 4.4 98 350-460 1-106 (107)
187 COG1220 HslU ATP-dependent pro 98.1 1.8E-06 4E-11 83.0 4.0 73 306-378 7-81 (444)
188 PRK07471 DNA polymerase III su 98.1 4.8E-06 1.1E-10 83.9 7.0 49 312-371 17-65 (365)
189 TIGR03420 DnaA_homol_Hda DnaA 98.1 3.4E-06 7.4E-11 79.4 5.3 74 348-435 39-118 (226)
190 PRK06526 transposase; Provisio 98.1 3.7E-07 8.1E-12 87.3 -1.5 106 343-465 94-205 (254)
191 PRK05201 hslU ATP-dependent pr 98.1 2.9E-06 6.4E-11 85.4 4.7 74 306-379 7-82 (443)
192 PF05673 DUF815: Protein of un 98.1 9.9E-06 2.1E-10 75.7 7.9 114 315-461 28-150 (249)
193 PRK08903 DnaA regulatory inact 98.1 7.3E-06 1.6E-10 77.3 6.9 71 348-435 43-116 (227)
194 PRK08084 DNA replication initi 98.0 6.9E-06 1.5E-10 77.9 6.0 25 348-372 46-70 (235)
195 PRK05564 DNA polymerase III su 98.0 1.6E-05 3.6E-10 78.8 8.7 108 313-435 3-119 (313)
196 PRK14971 DNA polymerase III su 98.0 2.1E-05 4.6E-10 84.5 9.6 113 312-435 15-147 (614)
197 PRK06620 hypothetical protein; 98.0 1.5E-05 3.3E-10 74.4 7.3 26 348-373 45-70 (214)
198 TIGR02688 conserved hypothetic 98.0 6.7E-06 1.4E-10 82.7 5.1 148 288-460 161-313 (449)
199 PRK07399 DNA polymerase III su 98.0 2E-05 4.3E-10 77.9 8.2 48 313-371 3-50 (314)
200 PRK08116 hypothetical protein; 98.0 3.1E-06 6.7E-11 81.8 2.1 101 348-462 115-221 (268)
201 PRK06893 DNA replication initi 98.0 6.9E-06 1.5E-10 77.6 4.2 72 349-435 41-119 (229)
202 PF13177 DNA_pol3_delta2: DNA 97.9 1E-05 2.2E-10 72.2 4.8 105 318-435 1-128 (162)
203 PRK15455 PrkA family serine pr 97.9 1.2E-05 2.6E-10 83.7 5.5 59 402-462 248-306 (644)
204 PRK12377 putative replication 97.9 1.6E-06 3.4E-11 82.5 -1.1 99 348-462 102-206 (248)
205 TIGR02928 orc1/cdc6 family rep 97.9 1.3E-05 2.9E-10 81.2 5.5 52 312-371 13-64 (365)
206 PRK08181 transposase; Validate 97.9 9.6E-07 2.1E-11 85.0 -2.9 102 347-465 106-213 (269)
207 KOG1808 AAA ATPase containing 97.9 1E-05 2.2E-10 93.7 4.1 123 348-470 441-569 (1856)
208 PRK08058 DNA polymerase III su 97.8 5.9E-05 1.3E-09 75.3 8.8 109 314-435 5-136 (329)
209 COG2812 DnaX DNA polymerase II 97.8 1.7E-05 3.6E-10 82.3 5.0 113 312-435 14-145 (515)
210 TIGR00678 holB DNA polymerase 97.8 3.4E-05 7.3E-10 70.5 6.5 28 408-435 95-122 (188)
211 KOG0990 Replication factor C, 97.8 9.5E-06 2.1E-10 77.7 2.0 85 348-435 63-157 (360)
212 PRK09183 transposase/IS protei 97.8 2.6E-05 5.7E-10 75.0 4.6 102 345-465 100-210 (259)
213 COG0542 clpA ATP-binding subun 97.8 1.9E-05 4.2E-10 85.1 3.8 127 316-474 172-326 (786)
214 PRK00411 cdc6 cell division co 97.7 8.8E-05 1.9E-09 76.0 7.6 53 311-371 26-79 (394)
215 PTZ00112 origin recognition co 97.7 4.2E-05 9.2E-10 82.8 5.0 41 411-461 871-911 (1164)
216 PF13337 Lon_2: Putative ATP-d 97.7 0.00036 7.9E-09 70.8 11.3 149 287-462 159-311 (457)
217 COG1484 DnaC DNA replication p 97.6 4.9E-06 1.1E-10 79.7 -2.5 103 347-466 105-214 (254)
218 PRK05707 DNA polymerase III su 97.6 5.2E-05 1.1E-09 75.3 4.3 88 348-435 23-132 (328)
219 COG2607 Predicted ATPase (AAA+ 97.6 0.00013 2.8E-09 67.4 6.4 112 315-461 61-183 (287)
220 PRK08727 hypothetical protein; 97.6 8.5E-05 1.8E-09 70.4 5.3 72 349-435 43-121 (233)
221 PRK09087 hypothetical protein; 97.6 8.4E-05 1.8E-09 70.0 5.0 66 349-434 46-111 (226)
222 KOG1969 DNA replication checkp 97.6 5.1E-05 1.1E-09 79.9 3.4 80 348-434 327-412 (877)
223 PRK07952 DNA replication prote 97.5 2.8E-05 6E-10 73.9 1.3 99 348-461 100-204 (244)
224 PRK06835 DNA replication prote 97.5 2.5E-05 5.4E-10 77.5 0.7 87 348-436 184-275 (329)
225 PHA01747 putative ATP-dependen 97.5 0.00049 1.1E-08 67.6 9.5 143 305-462 150-301 (425)
226 PF06309 Torsin: Torsin; Inte 97.4 0.00012 2.7E-09 61.3 3.7 61 306-371 17-77 (127)
227 PF03266 NTPase_1: NTPase; In 97.4 0.00036 7.8E-09 62.5 6.9 88 349-436 1-125 (168)
228 COG3854 SpoIIIAA ncharacterize 97.4 0.00019 4.2E-09 65.9 4.7 90 346-437 136-244 (308)
229 PRK06921 hypothetical protein; 97.4 0.00024 5.3E-09 68.6 5.7 24 348-371 118-141 (266)
230 PRK08939 primosomal protein Dn 97.3 6.8E-05 1.5E-09 73.8 1.2 24 348-371 157-180 (306)
231 PRK05642 DNA replication initi 97.3 0.00022 4.7E-09 67.6 4.4 73 348-435 46-125 (234)
232 PF05272 VirE: Virulence-assoc 97.3 0.00017 3.8E-09 66.2 3.4 98 347-463 52-151 (198)
233 PF13401 AAA_22: AAA domain; P 97.3 5.6E-05 1.2E-09 64.4 0.1 25 347-371 4-28 (131)
234 PHA02774 E1; Provisional 97.2 0.00084 1.8E-08 70.3 7.8 97 348-462 435-533 (613)
235 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.00035 7.6E-09 68.8 4.8 59 402-462 226-284 (358)
236 KOG2170 ATPase of the AAA+ sup 97.2 0.00012 2.6E-09 69.8 1.2 122 305-435 73-204 (344)
237 TIGR00362 DnaA chromosomal rep 97.2 8E-05 1.7E-09 76.6 -0.3 24 348-371 137-160 (405)
238 TIGR00602 rad24 checkpoint pro 97.2 0.00032 6.9E-09 75.2 4.1 57 310-373 80-136 (637)
239 PF03969 AFG1_ATPase: AFG1-lik 97.2 9.2E-05 2E-09 74.4 -0.0 27 347-373 62-88 (362)
240 COG1474 CDC6 Cdc6-related prot 97.1 0.00054 1.2E-08 69.1 4.9 104 348-462 43-166 (366)
241 PRK00149 dnaA chromosomal repl 97.1 0.00014 3E-09 75.9 0.6 24 348-371 149-172 (450)
242 COG1224 TIP49 DNA helicase TIP 97.1 0.00046 1E-08 67.3 4.0 57 308-373 33-91 (450)
243 PF03215 Rad17: Rad17 cell cyc 97.1 0.0021 4.6E-08 67.6 9.2 29 349-377 47-75 (519)
244 PRK04132 replication factor C 97.1 0.00034 7.3E-09 77.1 3.3 102 347-465 564-673 (846)
245 PF06068 TIP49: TIP49 C-termin 97.1 0.00051 1.1E-08 67.9 4.2 55 309-372 19-75 (398)
246 COG1618 Predicted nucleotide k 97.0 0.0011 2.4E-08 57.7 5.4 25 348-372 6-30 (179)
247 PRK08769 DNA polymerase III su 97.0 0.0014 3E-08 64.7 6.8 26 410-435 114-139 (319)
248 PF13207 AAA_17: AAA domain; P 97.0 0.0005 1.1E-08 57.7 3.2 28 350-377 2-29 (121)
249 TIGR02653 Lon_rel_chp conserve 97.0 0.0013 2.9E-08 69.5 6.9 149 287-460 167-319 (675)
250 PRK14086 dnaA chromosomal repl 97.0 0.00023 5.1E-09 75.4 1.1 23 349-371 316-338 (617)
251 PRK14087 dnaA chromosomal repl 97.0 0.0002 4.3E-09 74.5 0.2 23 348-370 142-164 (450)
252 PF13173 AAA_14: AAA domain 96.9 0.00072 1.6E-08 57.6 3.3 82 348-436 3-87 (128)
253 PF13671 AAA_33: AAA domain; P 96.9 0.00072 1.6E-08 58.5 3.2 27 350-376 2-28 (143)
254 PRK08699 DNA polymerase III su 96.9 0.0011 2.4E-08 65.9 4.4 27 409-435 113-139 (325)
255 COG5245 DYN1 Dynein, heavy cha 96.8 0.00025 5.4E-09 79.7 -0.4 113 347-462 1494-1621(3164)
256 PRK06871 DNA polymerase III su 96.8 0.0017 3.6E-08 64.4 5.4 88 348-435 25-133 (325)
257 PRK06964 DNA polymerase III su 96.8 0.0018 4E-08 64.5 5.6 26 410-435 133-158 (342)
258 PRK14088 dnaA chromosomal repl 96.8 0.00029 6.3E-09 73.1 -0.2 24 348-371 131-154 (440)
259 KOG3347 Predicted nucleotide k 96.8 0.00098 2.1E-08 57.1 3.0 33 347-379 7-39 (176)
260 PRK13947 shikimate kinase; Pro 96.8 0.0011 2.3E-08 59.5 3.4 31 349-379 3-33 (171)
261 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.4E-08 60.4 3.5 31 349-379 2-32 (188)
262 PRK08118 topology modulation p 96.7 0.001 2.2E-08 59.5 3.0 30 349-378 3-32 (167)
263 PRK12422 chromosomal replicati 96.7 0.00045 9.8E-09 71.6 0.7 24 348-371 142-165 (445)
264 PRK04296 thymidine kinase; Pro 96.7 0.0049 1.1E-07 56.4 7.3 21 350-370 5-25 (190)
265 PRK07993 DNA polymerase III su 96.7 0.0021 4.6E-08 64.1 5.3 88 347-435 24-134 (334)
266 PTZ00088 adenylate kinase 1; P 96.7 0.0015 3.2E-08 61.6 3.7 32 348-379 7-38 (229)
267 PRK06090 DNA polymerase III su 96.7 0.0026 5.7E-08 62.8 5.5 89 347-435 25-134 (319)
268 PRK03839 putative kinase; Prov 96.7 0.0013 2.8E-08 59.5 3.2 31 349-379 2-32 (180)
269 KOG2035 Replication factor C, 96.7 0.0071 1.5E-07 57.3 8.0 40 411-463 129-168 (351)
270 PRK00131 aroK shikimate kinase 96.7 0.0014 3.1E-08 58.6 3.3 31 348-378 5-35 (175)
271 PF01695 IstB_IS21: IstB-like 96.7 0.00092 2E-08 60.5 2.0 99 347-462 47-150 (178)
272 cd00464 SK Shikimate kinase (S 96.7 0.0015 3.3E-08 57.2 3.3 30 349-378 1-30 (154)
273 TIGR03015 pepcterm_ATPase puta 96.6 0.0019 4.2E-08 62.3 4.3 24 349-372 45-68 (269)
274 KOG0735 AAA+-type ATPase [Post 96.6 0.00038 8.3E-09 73.3 -0.9 27 347-373 431-457 (952)
275 PHA00729 NTP-binding motif con 96.6 0.0012 2.5E-08 61.6 2.3 25 348-372 18-42 (226)
276 PHA02624 large T antigen; Prov 96.6 0.0046 1E-07 65.2 6.9 96 348-461 432-542 (647)
277 PRK00625 shikimate kinase; Pro 96.6 0.0016 3.6E-08 58.5 3.1 31 349-379 2-32 (173)
278 KOG0741 AAA+-type ATPase [Post 96.6 0.00094 2E-08 68.2 1.6 84 348-434 539-629 (744)
279 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.002 4.3E-08 58.4 3.6 29 350-378 2-30 (183)
280 PRK14530 adenylate kinase; Pro 96.5 0.002 4.3E-08 60.2 3.5 31 348-378 4-34 (215)
281 PRK07261 topology modulation p 96.5 0.0022 4.9E-08 57.6 3.4 29 350-378 3-31 (171)
282 PRK13949 shikimate kinase; Pro 96.5 0.0022 4.8E-08 57.5 3.1 30 349-378 3-32 (169)
283 COG0563 Adk Adenylate kinase a 96.4 0.0022 4.8E-08 58.0 2.9 30 349-378 2-31 (178)
284 PF13191 AAA_16: AAA ATPase do 96.4 0.0036 7.7E-08 56.5 4.1 47 316-371 2-48 (185)
285 cd01428 ADK Adenylate kinase ( 96.4 0.003 6.5E-08 57.7 3.6 29 350-378 2-30 (194)
286 PRK14531 adenylate kinase; Pro 96.4 0.0028 6.2E-08 57.6 3.4 30 349-378 4-33 (183)
287 PF13245 AAA_19: Part of AAA d 96.4 0.0039 8.5E-08 47.9 3.6 22 350-371 13-35 (76)
288 KOG0736 Peroxisome assembly fa 96.3 0.0075 1.6E-07 64.5 6.6 39 344-382 428-466 (953)
289 PRK06217 hypothetical protein; 96.3 0.0032 7E-08 57.2 3.5 30 349-378 3-32 (183)
290 TIGR01313 therm_gnt_kin carboh 96.3 0.0032 6.9E-08 55.9 3.3 27 350-376 1-27 (163)
291 PF13604 AAA_30: AAA domain; P 96.3 0.0059 1.3E-07 56.2 5.1 87 349-435 20-119 (196)
292 cd01131 PilT Pilus retraction 96.3 0.012 2.5E-07 54.3 6.8 23 350-372 4-26 (198)
293 cd02021 GntK Gluconate kinase 96.2 0.0036 7.8E-08 54.7 3.2 27 350-376 2-28 (150)
294 PRK05917 DNA polymerase III su 96.2 0.0072 1.6E-07 58.7 5.4 88 348-435 20-121 (290)
295 KOG2383 Predicted ATPase [Gene 96.2 0.0012 2.5E-08 65.5 -0.1 103 347-462 114-234 (467)
296 PF01443 Viral_helicase1: Vira 96.2 0.012 2.6E-07 55.4 6.8 22 350-371 1-22 (234)
297 PF09848 DUF2075: Uncharacteri 96.2 0.0026 5.7E-08 64.2 2.3 90 349-438 3-120 (352)
298 PF13238 AAA_18: AAA domain; P 96.2 0.0028 6.1E-08 53.4 2.2 22 350-371 1-22 (129)
299 PRK05057 aroK shikimate kinase 96.2 0.0046 9.9E-08 55.6 3.6 32 348-379 5-36 (172)
300 cd00227 CPT Chloramphenicol (C 96.1 0.0035 7.5E-08 56.5 2.6 28 349-376 4-31 (175)
301 COG0703 AroK Shikimate kinase 96.1 0.0038 8.3E-08 55.5 2.8 31 348-378 3-33 (172)
302 PRK14528 adenylate kinase; Pro 96.1 0.0044 9.6E-08 56.5 3.3 30 349-378 3-32 (186)
303 cd02019 NK Nucleoside/nucleoti 96.1 0.0041 8.9E-08 46.8 2.5 22 350-371 2-23 (69)
304 COG1936 Predicted nucleotide k 96.1 0.0076 1.6E-07 53.3 4.4 27 349-376 2-28 (180)
305 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0039 8.4E-08 56.6 2.6 29 350-378 6-34 (188)
306 PLN02200 adenylate kinase fami 96.1 0.0063 1.4E-07 57.6 4.1 32 347-378 43-74 (234)
307 TIGR01351 adk adenylate kinase 96.1 0.0048 1E-07 57.4 3.2 29 350-378 2-30 (210)
308 PRK06762 hypothetical protein; 96.0 0.0053 1.2E-07 54.7 3.4 26 350-375 5-30 (166)
309 cd02020 CMPK Cytidine monophos 96.0 0.0051 1.1E-07 53.3 3.1 29 350-378 2-30 (147)
310 PRK14526 adenylate kinase; Pro 96.0 0.0053 1.1E-07 57.1 3.3 31 349-379 2-32 (211)
311 PF05970 PIF1: PIF1-like helic 96.0 0.0094 2E-07 60.4 5.3 87 348-434 23-127 (364)
312 PRK13946 shikimate kinase; Pro 96.0 0.0058 1.3E-07 55.6 3.3 33 347-379 10-42 (184)
313 PRK02496 adk adenylate kinase; 96.0 0.005 1.1E-07 55.9 2.8 30 349-378 3-32 (184)
314 PRK10078 ribose 1,5-bisphospho 96.0 0.0061 1.3E-07 55.5 3.4 30 348-377 3-32 (186)
315 COG1102 Cmk Cytidylate kinase 96.0 0.0061 1.3E-07 53.2 3.1 30 350-379 3-32 (179)
316 PRK13948 shikimate kinase; Pro 95.9 0.0071 1.5E-07 54.9 3.6 33 347-379 10-42 (182)
317 PLN02459 probable adenylate ki 95.9 0.008 1.7E-07 57.4 3.9 32 348-379 30-61 (261)
318 PF00519 PPV_E1_C: Papillomavi 95.9 0.013 2.9E-07 58.3 5.5 94 348-461 263-360 (432)
319 PRK03731 aroL shikimate kinase 95.9 0.0072 1.6E-07 54.1 3.4 30 349-378 4-33 (171)
320 PRK00279 adk adenylate kinase; 95.8 0.0073 1.6E-07 56.4 3.5 30 350-379 3-32 (215)
321 PLN02674 adenylate kinase 95.8 0.0073 1.6E-07 57.3 3.2 32 348-379 32-63 (244)
322 KOG1942 DNA helicase, TBP-inte 95.8 0.0093 2E-07 56.9 3.7 57 308-373 32-90 (456)
323 cd03222 ABC_RNaseL_inhibitor T 95.8 0.0051 1.1E-07 55.6 1.9 81 347-434 25-115 (177)
324 COG4619 ABC-type uncharacteriz 95.7 0.0087 1.9E-07 52.7 3.2 30 343-372 25-54 (223)
325 TIGR01447 recD exodeoxyribonuc 95.7 0.022 4.9E-07 61.1 7.0 26 410-435 260-285 (586)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.0066 1.4E-07 52.9 2.4 85 345-435 24-115 (144)
327 TIGR00150 HI0065_YjeE ATPase, 95.7 0.014 3.1E-07 49.8 4.3 26 348-373 23-48 (133)
328 COG1126 GlnQ ABC-type polar am 95.6 0.0026 5.7E-08 58.2 -0.4 24 348-371 29-52 (240)
329 cd01120 RecA-like_NTPases RecA 95.6 0.0071 1.5E-07 53.0 2.3 23 349-371 1-23 (165)
330 TIGR01618 phage_P_loop phage n 95.6 0.005 1.1E-07 57.4 1.3 22 347-368 12-33 (220)
331 cd00071 GMPK Guanosine monopho 95.6 0.011 2.5E-07 50.9 3.5 25 350-374 2-26 (137)
332 TIGR02768 TraA_Ti Ti-type conj 95.6 0.015 3.4E-07 64.3 5.1 83 349-434 370-464 (744)
333 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.012 2.7E-07 51.8 3.6 91 345-435 23-125 (157)
334 TIGR01448 recD_rel helicase, p 95.5 0.015 3.3E-07 64.0 5.0 84 349-435 340-442 (720)
335 PRK14527 adenylate kinase; Pro 95.5 0.008 1.7E-07 55.0 2.3 29 348-376 7-35 (191)
336 PRK14529 adenylate kinase; Pro 95.5 0.0085 1.8E-07 56.1 2.5 29 349-377 2-30 (223)
337 PF13086 AAA_11: AAA domain; P 95.5 0.013 2.8E-07 54.7 3.8 20 350-369 20-39 (236)
338 TIGR01613 primase_Cterm phage/ 95.5 0.039 8.4E-07 54.5 7.3 105 348-462 77-182 (304)
339 TIGR02322 phosphon_PhnN phosph 95.5 0.0095 2.1E-07 53.8 2.6 23 350-372 4-26 (179)
340 COG1067 LonB Predicted ATP-dep 95.4 0.027 5.9E-07 60.6 6.1 115 348-462 132-286 (647)
341 PRK08233 hypothetical protein; 95.4 0.01 2.3E-07 53.4 2.6 23 350-372 6-28 (182)
342 PRK06547 hypothetical protein; 95.4 0.012 2.7E-07 52.8 3.0 30 348-377 16-45 (172)
343 PRK04040 adenylate kinase; Pro 95.4 0.014 3E-07 53.3 3.3 25 348-372 3-27 (188)
344 PRK01184 hypothetical protein; 95.3 0.013 2.9E-07 53.0 3.2 28 350-378 4-31 (184)
345 PF05729 NACHT: NACHT domain 95.3 0.01 2.2E-07 52.3 2.3 21 350-370 3-23 (166)
346 PF00406 ADK: Adenylate kinase 95.3 0.01 2.2E-07 52.1 2.2 27 352-378 1-27 (151)
347 PF13521 AAA_28: AAA domain; P 95.3 0.013 2.9E-07 52.0 3.0 24 350-374 2-25 (163)
348 COG1116 TauB ABC-type nitrate/ 95.2 0.011 2.3E-07 55.5 2.2 25 348-372 30-54 (248)
349 TIGR01420 pilT_fam pilus retra 95.2 0.062 1.3E-06 54.0 7.7 25 348-372 123-147 (343)
350 PF13479 AAA_24: AAA domain 95.2 0.015 3.3E-07 54.2 3.1 29 348-380 4-32 (213)
351 PRK08154 anaerobic benzoate ca 95.2 0.026 5.7E-07 55.8 4.8 36 343-378 129-164 (309)
352 PHA02530 pseT polynucleotide k 95.1 0.017 3.7E-07 56.7 3.5 24 349-372 4-27 (300)
353 PF13555 AAA_29: P-loop contai 95.1 0.016 3.5E-07 42.4 2.4 23 349-371 25-47 (62)
354 cd01130 VirB11-like_ATPase Typ 95.1 0.026 5.6E-07 51.4 4.4 25 348-372 26-50 (186)
355 PRK04182 cytidylate kinase; Pr 95.1 0.017 3.7E-07 51.9 3.2 28 350-377 3-30 (180)
356 PF00308 Bac_DnaA: Bacterial d 95.1 0.011 2.5E-07 55.3 2.1 82 349-435 36-125 (219)
357 PRK13764 ATPase; Provisional 95.1 0.011 2.4E-07 63.0 2.1 25 348-372 258-282 (602)
358 PF08477 Miro: Miro-like prote 95.1 0.014 3E-07 48.5 2.4 24 350-373 2-25 (119)
359 COG3839 MalK ABC-type sugar tr 95.1 0.011 2.4E-07 58.6 1.9 24 348-371 30-53 (338)
360 PRK12339 2-phosphoglycerate ki 95.1 0.019 4.1E-07 52.8 3.3 30 348-377 4-33 (197)
361 cd02027 APSK Adenosine 5'-phos 95.1 0.02 4.3E-07 50.2 3.3 22 350-371 2-23 (149)
362 TIGR03263 guanyl_kin guanylate 95.1 0.013 2.9E-07 52.8 2.2 24 350-373 4-27 (180)
363 PF01057 Parvo_NS1: Parvovirus 95.0 0.033 7.1E-07 53.7 4.9 93 349-461 115-208 (271)
364 COG4088 Predicted nucleotide k 95.0 0.014 2.9E-07 53.1 2.1 24 350-373 4-27 (261)
365 TIGR02173 cyt_kin_arch cytidyl 95.0 0.02 4.3E-07 51.0 3.1 28 350-377 3-30 (171)
366 PRK13900 type IV secretion sys 95.0 0.027 5.8E-07 56.2 4.3 26 348-373 161-186 (332)
367 PRK00300 gmk guanylate kinase; 95.0 0.016 3.5E-07 53.5 2.5 25 348-372 6-30 (205)
368 PRK09825 idnK D-gluconate kina 95.0 0.022 4.7E-07 51.5 3.3 26 349-374 5-30 (176)
369 COG1485 Predicted ATPase [Gene 94.9 0.0085 1.8E-07 58.8 0.5 26 348-373 66-91 (367)
370 PRK05541 adenylylsulfate kinas 94.9 0.017 3.7E-07 51.9 2.4 25 348-372 8-32 (176)
371 TIGR03574 selen_PSTK L-seryl-t 94.8 0.017 3.8E-07 55.2 2.2 23 350-372 2-24 (249)
372 cd01124 KaiC KaiC is a circadi 94.7 0.019 4.1E-07 52.0 2.3 20 350-369 2-21 (187)
373 KOG0060 Long-chain acyl-CoA tr 94.7 0.017 3.7E-07 60.0 2.2 29 344-372 458-486 (659)
374 cd00820 PEPCK_HprK Phosphoenol 94.7 0.021 4.6E-07 46.8 2.2 21 348-368 16-36 (107)
375 PLN02165 adenylate isopentenyl 94.7 0.027 5.8E-07 55.7 3.3 30 348-377 44-73 (334)
376 PRK08356 hypothetical protein; 94.6 0.03 6.4E-07 51.4 3.4 29 349-378 7-35 (195)
377 cd01129 PulE-GspE PulE/GspE Th 94.6 0.2 4.3E-06 48.3 9.2 87 349-437 82-175 (264)
378 PLN02199 shikimate kinase 94.6 0.029 6.3E-07 54.4 3.4 31 348-378 103-133 (303)
379 PRK13851 type IV secretion sys 94.6 0.018 3.9E-07 57.6 2.1 26 348-373 163-188 (344)
380 TIGR00235 udk uridine kinase. 94.6 0.022 4.8E-07 52.8 2.5 25 348-372 7-31 (207)
381 PRK10536 hypothetical protein; 94.6 0.037 8.1E-07 52.6 3.9 21 349-369 76-96 (262)
382 PRK13889 conjugal transfer rel 94.6 0.045 9.7E-07 61.9 5.2 85 350-434 365-458 (988)
383 PRK13808 adenylate kinase; Pro 94.6 0.027 5.9E-07 55.8 3.1 30 349-378 2-31 (333)
384 cd02023 UMPK Uridine monophosp 94.6 0.023 4.9E-07 52.2 2.5 22 350-371 2-23 (198)
385 PF01745 IPT: Isopentenyl tran 94.6 0.032 6.9E-07 51.2 3.3 31 350-380 4-34 (233)
386 PRK07132 DNA polymerase III su 94.5 0.085 1.8E-06 51.8 6.5 85 348-435 19-116 (299)
387 PRK13826 Dtr system oriT relax 94.5 0.054 1.2E-06 61.7 5.8 85 348-435 398-494 (1102)
388 PRK11545 gntK gluconate kinase 94.5 0.03 6.6E-07 49.8 3.0 24 353-376 1-24 (163)
389 COG3842 PotA ABC-type spermidi 94.5 0.021 4.7E-07 56.8 2.2 21 350-370 34-54 (352)
390 PRK14737 gmk guanylate kinase; 94.4 0.028 6.2E-07 51.2 2.8 26 348-373 5-30 (186)
391 TIGR03499 FlhF flagellar biosy 94.4 0.055 1.2E-06 52.7 4.9 25 347-371 194-218 (282)
392 PF10662 PduV-EutP: Ethanolami 94.4 0.023 5E-07 49.1 2.0 22 350-371 4-25 (143)
393 PRK05480 uridine/cytidine kina 94.4 0.027 5.8E-07 52.3 2.5 25 348-372 7-31 (209)
394 TIGR00174 miaA tRNA isopenteny 94.3 0.1 2.2E-06 50.7 6.5 29 350-378 2-30 (287)
395 COG1117 PstB ABC-type phosphat 94.3 0.026 5.6E-07 51.8 2.1 24 348-371 34-57 (253)
396 PRK12338 hypothetical protein; 94.3 0.037 8.1E-07 54.4 3.5 29 348-376 5-33 (319)
397 PRK00889 adenylylsulfate kinas 94.3 0.027 5.9E-07 50.6 2.3 23 349-371 6-28 (175)
398 PRK05800 cobU adenosylcobinami 94.3 0.04 8.7E-07 49.4 3.3 27 349-375 3-29 (170)
399 PF00005 ABC_tran: ABC transpo 94.2 0.025 5.4E-07 48.4 1.8 27 346-372 10-36 (137)
400 PF00485 PRK: Phosphoribulokin 94.2 0.027 5.8E-07 51.6 2.1 23 350-372 2-24 (194)
401 PF00625 Guanylate_kin: Guanyl 94.2 0.039 8.4E-07 50.0 3.1 26 348-373 3-28 (183)
402 cd03227 ABC_Class2 ABC-type Cl 94.2 0.047 1E-06 48.5 3.5 23 348-370 22-44 (162)
403 TIGR00017 cmk cytidylate kinas 94.1 0.043 9.3E-07 51.3 3.2 31 349-379 4-34 (217)
404 TIGR02525 plasmid_TraJ plasmid 94.1 0.088 1.9E-06 53.2 5.7 88 349-438 151-252 (372)
405 smart00072 GuKc Guanylate kina 94.1 0.051 1.1E-06 49.3 3.7 26 348-373 3-28 (184)
406 PF01637 Arch_ATPase: Archaeal 94.1 0.044 9.5E-07 51.1 3.3 25 348-372 21-45 (234)
407 PF01926 MMR_HSR1: 50S ribosom 94.0 0.03 6.6E-07 46.4 1.9 20 350-369 2-21 (116)
408 COG4178 ABC-type uncharacteriz 94.0 0.039 8.3E-07 58.6 3.1 30 343-372 415-444 (604)
409 cd02022 DPCK Dephospho-coenzym 94.0 0.05 1.1E-06 49.2 3.4 28 350-378 2-29 (179)
410 cd01918 HprK_C HprK/P, the bif 94.0 0.037 8.1E-07 48.2 2.4 24 347-370 14-37 (149)
411 cd02024 NRK1 Nicotinamide ribo 94.0 0.051 1.1E-06 49.5 3.4 23 350-372 2-24 (187)
412 PF06048 DUF927: Domain of unk 94.0 0.031 6.6E-07 54.7 2.0 67 348-428 194-261 (286)
413 KOG0066 eIF2-interacting prote 93.9 0.092 2E-06 52.9 5.3 31 405-435 718-749 (807)
414 COG1120 FepC ABC-type cobalami 93.9 0.034 7.4E-07 53.0 2.3 26 347-372 28-53 (258)
415 PRK14738 gmk guanylate kinase; 93.9 0.04 8.7E-07 51.1 2.7 25 348-372 14-38 (206)
416 cd04137 RheB Rheb (Ras Homolog 93.9 0.035 7.6E-07 49.8 2.3 23 348-370 2-24 (180)
417 cd03281 ABC_MSH5_euk MutS5 hom 93.9 0.14 3E-06 47.7 6.3 22 348-369 30-51 (213)
418 PRK06696 uridine kinase; Valid 93.9 0.054 1.2E-06 50.9 3.5 24 348-371 23-46 (223)
419 TIGR02788 VirB11 P-type DNA tr 93.9 0.063 1.4E-06 53.1 4.1 26 348-373 145-170 (308)
420 COG1855 ATPase (PilT family) [ 93.8 0.036 7.7E-07 56.1 2.3 24 348-371 264-287 (604)
421 PF07931 CPT: Chloramphenicol 93.8 0.051 1.1E-06 48.8 3.0 30 350-379 4-33 (174)
422 TIGR02782 TrbB_P P-type conjug 93.8 0.035 7.7E-07 54.5 2.2 24 348-371 133-156 (299)
423 PRK05818 DNA polymerase III su 93.8 0.11 2.3E-06 49.6 5.3 87 347-435 7-114 (261)
424 PRK12678 transcription termina 93.8 0.052 1.1E-06 57.1 3.3 24 348-371 417-440 (672)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.7 0.042 9.1E-07 51.2 2.4 27 346-372 29-55 (218)
426 COG1124 DppF ABC-type dipeptid 93.7 0.038 8.2E-07 51.6 2.0 24 348-371 34-57 (252)
427 TIGR02237 recomb_radB DNA repa 93.7 0.044 9.5E-07 50.7 2.5 22 348-369 13-34 (209)
428 PRK13975 thymidylate kinase; P 93.7 0.045 9.8E-07 50.0 2.5 25 349-373 4-28 (196)
429 PRK13833 conjugal transfer pro 93.7 0.04 8.7E-07 54.5 2.3 24 348-371 145-168 (323)
430 KOG0058 Peptide exporter, ABC 93.6 0.046 1E-06 58.5 2.8 28 344-371 491-518 (716)
431 PF09439 SRPRB: Signal recogni 93.6 0.085 1.9E-06 47.6 4.1 23 348-370 4-26 (181)
432 cd03269 ABC_putative_ATPase Th 93.6 0.045 9.6E-07 50.8 2.4 27 345-371 24-50 (210)
433 PF00437 T2SE: Type II/IV secr 93.6 0.033 7.1E-07 53.9 1.5 88 348-438 128-223 (270)
434 PRK13894 conjugal transfer ATP 93.6 0.04 8.8E-07 54.6 2.1 23 348-370 149-171 (319)
435 cd03258 ABC_MetN_methionine_tr 93.5 0.046 1E-06 51.5 2.5 29 344-372 28-56 (233)
436 cd03292 ABC_FtsE_transporter F 93.5 0.048 1E-06 50.7 2.5 28 345-372 25-52 (214)
437 cd03216 ABC_Carb_Monos_I This 93.5 0.051 1.1E-06 48.3 2.5 87 344-435 23-127 (163)
438 PRK14730 coaE dephospho-CoA ki 93.5 0.066 1.4E-06 49.2 3.3 29 350-378 4-32 (195)
439 cd02028 UMPK_like Uridine mono 93.5 0.05 1.1E-06 49.2 2.5 23 350-372 2-24 (179)
440 cd03247 ABCC_cytochrome_bd The 93.5 0.05 1.1E-06 49.1 2.4 29 344-372 25-53 (178)
441 PF01583 APS_kinase: Adenylyls 93.5 0.05 1.1E-06 47.9 2.3 88 348-435 3-98 (156)
442 PRK00091 miaA tRNA delta(2)-is 93.4 0.07 1.5E-06 52.5 3.6 29 349-377 6-34 (307)
443 PF06745 KaiC: KaiC; InterPro 93.4 0.052 1.1E-06 51.0 2.6 22 347-368 19-40 (226)
444 PRK13541 cytochrome c biogenes 93.4 0.052 1.1E-06 49.7 2.5 27 345-371 24-50 (195)
445 PRK06761 hypothetical protein; 93.4 0.065 1.4E-06 52.0 3.1 24 350-373 6-29 (282)
446 TIGR02315 ABC_phnC phosphonate 93.3 0.052 1.1E-06 51.5 2.4 27 345-371 26-52 (243)
447 cd03301 ABC_MalK_N The N-termi 93.3 0.054 1.2E-06 50.3 2.5 27 345-371 24-50 (213)
448 TIGR03608 L_ocin_972_ABC putat 93.3 0.056 1.2E-06 49.9 2.6 28 345-372 22-49 (206)
449 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.059 1.3E-06 51.9 2.8 23 347-369 36-58 (259)
450 KOG3354 Gluconate kinase [Carb 93.3 0.055 1.2E-06 46.9 2.2 29 349-377 14-42 (191)
451 PTZ00202 tuzin; Provisional 93.3 0.17 3.6E-06 51.8 5.9 60 313-381 261-320 (550)
452 cd03228 ABCC_MRP_Like The MRP 93.3 0.057 1.2E-06 48.3 2.5 28 345-372 26-53 (171)
453 cd04119 RJL RJL (RabJ-Like) su 93.3 0.054 1.2E-06 47.6 2.3 22 349-370 2-23 (168)
454 cd04160 Arfrp1 Arfrp1 subfamil 93.3 0.052 1.1E-06 47.9 2.2 22 349-370 1-22 (167)
455 KOG0064 Peroxisomal long-chain 93.3 0.051 1.1E-06 56.0 2.3 29 344-372 505-533 (728)
456 cd04155 Arl3 Arl3 subfamily. 93.3 0.052 1.1E-06 48.2 2.2 23 348-370 15-37 (173)
457 PRK14722 flhF flagellar biosyn 93.3 0.099 2.2E-06 52.8 4.4 24 347-370 137-160 (374)
458 PRK05439 pantothenate kinase; 93.3 0.049 1.1E-06 53.6 2.2 25 348-372 87-111 (311)
459 cd03262 ABC_HisP_GlnQ_permease 93.2 0.055 1.2E-06 50.2 2.4 28 345-372 24-51 (213)
460 TIGR03410 urea_trans_UrtE urea 93.2 0.054 1.2E-06 51.0 2.3 28 344-371 23-50 (230)
461 cd03264 ABC_drug_resistance_li 93.2 0.057 1.2E-06 50.1 2.5 23 349-371 27-49 (211)
462 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.075 1.6E-06 50.4 3.3 22 347-368 21-42 (237)
463 PLN02840 tRNA dimethylallyltra 93.2 0.19 4.2E-06 51.3 6.3 30 348-377 22-51 (421)
464 cd03224 ABC_TM1139_LivF_branch 93.2 0.055 1.2E-06 50.6 2.3 28 344-371 23-50 (222)
465 smart00175 RAB Rab subfamily o 93.2 0.056 1.2E-06 47.3 2.2 22 349-370 2-23 (164)
466 TIGR00231 small_GTP small GTP- 93.1 0.058 1.3E-06 46.3 2.2 23 348-370 2-24 (161)
467 cd03263 ABC_subfamily_A The AB 93.1 0.059 1.3E-06 50.3 2.4 27 345-371 26-52 (220)
468 PRK13695 putative NTPase; Prov 93.1 0.06 1.3E-06 48.3 2.4 22 349-370 2-23 (174)
469 cd03115 SRP The signal recogni 93.1 0.058 1.3E-06 48.3 2.3 21 350-370 3-23 (173)
470 cd00876 Ras Ras family. The R 93.1 0.056 1.2E-06 47.0 2.1 21 350-370 2-22 (160)
471 cd01128 rho_factor Transcripti 93.1 0.064 1.4E-06 51.2 2.6 26 348-373 17-42 (249)
472 KOG1970 Checkpoint RAD17-RFC c 93.1 0.063 1.4E-06 55.6 2.7 31 348-378 111-141 (634)
473 cd04156 ARLTS1 ARLTS1 subfamil 93.1 0.057 1.2E-06 47.3 2.1 22 349-370 1-22 (160)
474 cd03266 ABC_NatA_sodium_export 93.1 0.06 1.3E-06 50.2 2.4 27 346-372 30-56 (218)
475 TIGR02673 FtsE cell division A 93.1 0.059 1.3E-06 50.1 2.4 25 347-371 28-52 (214)
476 cd03230 ABC_DR_subfamily_A Thi 93.1 0.063 1.4E-06 48.2 2.4 28 345-372 24-51 (173)
477 cd03246 ABCC_Protease_Secretio 93.1 0.07 1.5E-06 47.9 2.7 26 347-372 28-53 (173)
478 TIGR01526 nadR_NMN_Atrans nico 93.1 0.071 1.5E-06 53.1 3.0 27 349-375 164-190 (325)
479 TIGR01166 cbiO cobalt transpor 93.1 0.06 1.3E-06 49.1 2.3 27 345-371 16-42 (190)
480 cd03226 ABC_cobalt_CbiO_domain 93.1 0.063 1.4E-06 49.6 2.5 27 345-371 24-50 (205)
481 cd03214 ABC_Iron-Siderophores_ 93.0 0.065 1.4E-06 48.4 2.5 28 345-372 23-50 (180)
482 cd04159 Arl10_like Arl10-like 93.0 0.054 1.2E-06 46.8 1.9 21 350-370 2-22 (159)
483 cd04177 RSR1 RSR1 subgroup. R 93.0 0.063 1.4E-06 47.6 2.3 23 348-370 2-24 (168)
484 cd03239 ABC_SMC_head The struc 93.0 0.76 1.7E-05 41.4 9.4 23 350-372 25-47 (178)
485 PRK05537 bifunctional sulfate 93.0 0.099 2.1E-06 56.0 4.2 27 347-373 392-418 (568)
486 cd01123 Rad51_DMC1_radA Rad51_ 93.0 0.079 1.7E-06 49.9 3.1 23 348-370 20-42 (235)
487 cd03261 ABC_Org_Solvent_Resist 93.0 0.063 1.4E-06 50.7 2.4 28 345-372 24-51 (235)
488 PRK08533 flagellar accessory p 93.0 0.067 1.5E-06 50.5 2.6 23 348-370 25-48 (230)
489 cd04124 RabL2 RabL2 subfamily. 93.0 0.064 1.4E-06 47.3 2.3 21 349-369 2-22 (161)
490 TIGR00960 3a0501s02 Type II (G 93.0 0.064 1.4E-06 49.9 2.4 26 347-372 29-54 (216)
491 PRK09361 radB DNA repair and r 93.0 0.067 1.4E-06 50.2 2.5 22 348-369 24-45 (225)
492 PRK13540 cytochrome c biogenes 93.0 0.068 1.5E-06 49.2 2.5 27 345-371 25-51 (200)
493 TIGR02211 LolD_lipo_ex lipopro 93.0 0.064 1.4E-06 50.1 2.4 26 346-371 30-55 (221)
494 cd03293 ABC_NrtD_SsuB_transpor 93.0 0.068 1.5E-06 50.0 2.5 27 345-371 28-54 (220)
495 COG0194 Gmk Guanylate kinase [ 92.9 0.089 1.9E-06 47.3 3.1 24 348-371 5-28 (191)
496 cd04113 Rab4 Rab4 subfamily. 92.9 0.065 1.4E-06 47.0 2.3 22 349-370 2-23 (161)
497 smart00173 RAS Ras subfamily o 92.9 0.065 1.4E-06 47.1 2.3 20 350-369 3-22 (164)
498 PRK04220 2-phosphoglycerate ki 92.9 0.095 2.1E-06 51.1 3.5 28 348-375 93-120 (301)
499 cd04138 H_N_K_Ras_like H-Ras/N 92.9 0.066 1.4E-06 46.7 2.3 21 349-369 3-23 (162)
500 PRK08099 bifunctional DNA-bind 92.9 0.083 1.8E-06 54.1 3.3 27 348-374 220-246 (399)
No 1
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-82 Score=631.17 Aligned_cols=440 Identities=35% Similarity=0.525 Sum_probs=367.5
Q ss_pred HHHH-HHHHHHHHHHhH--------HHHHHhhcCCCCCCceeEEEechhhhc-cCHHHHHHHHhChHHHHHHHHHHHHHH
Q 011953 7 PAHL-KALAEFVIRHHS--------DQLRSITLSPDPKLHYPLYIDFAELLD-EDPEIAHLVFSKPADYLRFFEDAAIWA 76 (474)
Q Consensus 7 ~~~~-~~~~~fl~~~y~--------~~i~~~~~~~~~~~~~~l~Vd~~~l~~-~~p~L~~~l~~~P~~~l~~~~~a~~~~ 76 (474)
...+ +.|.+||+.|+. ..+..+.. ....+|.||+.||.+ +++.|+..|.++|.+.++++..|+..+
T Consensus 22 g~~~~e~~~~Fle~~~~~~~e~~~~~~i~~~~~----~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~ 97 (764)
T KOG0480|consen 22 GERVEEEFLQFLESFKVQAGEKKYLQSIELLDR----PERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKV 97 (764)
T ss_pred ccchHHHHHHHHHHhhccccchhhHHHHHhhcc----CCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3444 348888887744 33333222 134699999999999 999999999999999999999999887
Q ss_pred HHHHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCC
Q 011953 77 HKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKH 156 (474)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~ 156 (474)
... .+. ........++++|+ |+|.. ..+|+|+++.+|+||.+.|+|+|+|+|+|.+++++|.|..||.
T Consensus 98 l~d-~~~----~~~~~~~~~~v~f~------nlp~~-~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t 165 (764)
T KOG0480|consen 98 LKD-WST----NSGALVKKIYVRFY------NLPTR-HKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGT 165 (764)
T ss_pred HHc-ccc----cccccceeEEEEEe------ccccc-cccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCC
Confidence 652 111 11334567889998 44433 5689999999999999999999999999999999999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCCCCCC-ceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceee
Q 011953 157 MFPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVK 235 (474)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~ 235 (474)
... ..++.++|+.|..||+ ..|.++ .|.++.+++.|.|||+|||||..++.|.|.+||+++|+|++|+|++|+
T Consensus 166 ~i~---~v~q~fkYt~Pt~C~n---p~C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~ 239 (764)
T KOG0480|consen 166 VIR---NVEQQFKYTEPTKCPN---PVCSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQ 239 (764)
T ss_pred eec---cchhcCccCCCccCCC---ccccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcC
Confidence 653 3467789999999997 678874 599999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeeeC------CCCCCccc------cceeEEEeecccccccc--------cCC------------CCCC
Q 011953 236 AGDDVIVTGILTAKWS------PDLKDVRC------DLDPVLIANHVRRTNEL--------KSD------------IDIP 283 (474)
Q Consensus 236 pGd~V~v~GIl~~~~~------~~~~~~~~------~~~~~i~a~~i~~~~~~--------~~~------------~~~~ 283 (474)
|||+|.+|||+...++ ++.+.... .+=+.++|.+|+.++.- ... ..++
T Consensus 240 pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s 319 (764)
T KOG0480|consen 240 PGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMS 319 (764)
T ss_pred CCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhcc
Confidence 9999999999998663 22221111 22346677777654321 000 1233
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHH
Q 011953 284 DDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQF 363 (474)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~l 363 (474)
.+|...+.++ .. ++ +.+..|..|++|.||||+.+|.+|+|+|+||+.+....|.++||++||+++|+||||||++
T Consensus 320 ~~e~~~~~em---~~-~~-nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQf 394 (764)
T KOG0480|consen 320 SEEFAEIREM---SK-DE-NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQF 394 (764)
T ss_pred HHHHHHHHHH---hc-Cc-hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHH
Confidence 3333333322 11 22 3578899999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHhcCceEEEeCCCcccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEE
Q 011953 364 LKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA 441 (474)
Q Consensus 364 a~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~ 441 (474)
+++++..+|+++|++|..++.+|||+++++|+ +++.+++|+|++|++|||||||||+|...+|.++|+|||||+++++
T Consensus 395 Lk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIa 474 (764)
T KOG0480|consen 395 LKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIA 474 (764)
T ss_pred HHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehhe
Confidence 99999999999999999999999999999997 8999999999999999999999999999999999999999999999
Q ss_pred EcCeeEeeCCCeEEEEeecCC-CCCCCCCCccC
Q 011953 442 KAGLVTTLSTRTIIFGATNPK-GHYDPNLCITF 473 (474)
Q Consensus 442 ~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~~ 473 (474)
|+|..+++++|.+||||+||. |+||.++|+.+
T Consensus 475 KAGv~aTLnARtSIlAAANPv~GhYdR~ktl~e 507 (764)
T KOG0480|consen 475 KAGVVATLNARTSILAAANPVGGHYDRKKTLRE 507 (764)
T ss_pred ecceEEeecchhhhhhhcCCcCCccccccchhh
Confidence 999999999999999999998 99999999864
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-79 Score=638.36 Aligned_cols=414 Identities=40% Similarity=0.642 Sum_probs=366.8
Q ss_pred eeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccc
Q 011953 38 YPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIG 117 (474)
Q Consensus 38 ~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~ 117 (474)
.++.||+.|+..++++|+..++++|.+++++|++|+.++....+.+. ......+|+||. ++|.. .++|
T Consensus 31 ~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------~~~~~-~~iR 98 (682)
T COG1241 31 RSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEV-----DRSLKKIHVRFK------NLPNR-LSIR 98 (682)
T ss_pred eEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCccc-----cccccceEEEec------CCcCC-cChh
Confidence 39999999999999999999999999999999999999876433221 111256888886 33332 3799
Q ss_pred cccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCCccccccccccCccccCCCCCCCCCCCCCCCCceEEeeccee
Q 011953 118 RVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTNFQFVENSII 197 (474)
Q Consensus 118 ~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~~~~~~~~s~ 197 (474)
+|++.|+||||+|+|+|+|+|.|+|.+++++|.|++||+.+.+.. +...+..|..||++ ... +..+|.++.+.|.
T Consensus 99 ~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~---~~~~~~~~~~C~~~-~~~-~~~~~~~~~~~s~ 173 (682)
T COG1241 99 ELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQ---SEFRVEPPRECENC-GKF-GKGPLKLVPRKSE 173 (682)
T ss_pred hCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEe---ccccccCCccCCCc-ccc-CCCceEEecCcce
Confidence 999999999999999999999999999999999999999876653 23446778889873 111 3335899999999
Q ss_pred EeeeeEEEEeecccccCCCCcceeEEEEEecCccceeeeCCeEEEEEEEEeeeC-CCC-CCccccceeEEEeeccccccc
Q 011953 198 CHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGILTAKWS-PDL-KDVRCDLDPVLIANHVRRTNE 275 (474)
Q Consensus 198 ~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~v~GIl~~~~~-~~~-~~~~~~~~~~i~a~~i~~~~~ 275 (474)
|+|||+|+|||.|+.+|.|++|++++|+|++||+++++|||+|.||||++..+. ... ......+++++.|+++.+.+.
T Consensus 174 f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 253 (682)
T COG1241 174 FIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEKLDK 253 (682)
T ss_pred eeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccccCCceEEEEEEEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999998873 221 234457899999999998765
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCC
Q 011953 276 LKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGD 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~ 355 (474)
. ....+++++.++|.++.+. + ..++.+++|++|+|+|++.+|+|++++|+||+.+..++|+++||++||||+|+
T Consensus 254 ~-~~~~~t~ed~e~i~elak~----~-~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGD 327 (682)
T COG1241 254 R-EEVEITEEDEEEIKELAKR----P-DIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGD 327 (682)
T ss_pred h-hhccCCHHHHHHHHHHhcC----C-cHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCC
Confidence 4 6678899999999887543 2 24689999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHH
Q 011953 356 PGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAM 433 (474)
Q Consensus 356 pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~m 433 (474)
||||||+|++.+++++|+++|+++.+++++|||+++.++. |+|.+++|+|++|++|||||||||+|+..++.++|++|
T Consensus 328 PgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaM 407 (682)
T COG1241 328 PGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAM 407 (682)
T ss_pred CchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred HhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCCCCccCC
Q 011953 434 EQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLCITFQ 474 (474)
Q Consensus 434 e~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~~~ 474 (474)
|||+++++|+|+.+++++||+|+||+||. |+||+.+++.+|
T Consensus 408 EQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en 449 (682)
T COG1241 408 EQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAEN 449 (682)
T ss_pred HhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHh
Confidence 99999999999999999999999999998 999999998765
No 3
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-78 Score=599.88 Aligned_cols=444 Identities=30% Similarity=0.425 Sum_probs=383.1
Q ss_pred HHHHHHHHHHHHH-----HhHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHh
Q 011953 7 PAHLKALAEFVIR-----HHSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVF 81 (474)
Q Consensus 7 ~~~~~~~~~fl~~-----~y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~~ 81 (474)
.+..+.|.+||.+ .|.+.|..++.. .++.|.||++||..|+|++|..|+.+|.++++.|++|+.++....-
T Consensus 11 ~e~~r~f~efLd~~~D~~iy~e~i~~~~~~----~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d 86 (818)
T KOG0479|consen 11 RERVRDFIEFLDDEEDADIYQEAIKKLLNE----GQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRID 86 (818)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHhhhc----CcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhccc
Confidence 3444669999988 488888888775 5678999999999999999999999999999999999998765311
Q ss_pred hhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCCcccc-
Q 011953 82 DELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPV- 160 (474)
Q Consensus 82 ~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~- 160 (474)
..+...+..++|-|. |+. ..+..++|.|.+.++|++||++|+|+++|-|+|++.+.++.|+..+...+.
T Consensus 87 -----~~~~~~~~~~~vGfe--GsF---G~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~ 156 (818)
T KOG0479|consen 87 -----DVYAKVKELFFVGFE--GSF---GNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERD 156 (818)
T ss_pred -----chhhhhccceEEEee--eec---cccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhh
Confidence 113444556666664 543 357788999999999999999999999999999999999999999876433
Q ss_pred ccccccCccccCCCCCCCCCCCCCCCCceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceeeeCCeE
Q 011953 161 YPELETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDV 240 (474)
Q Consensus 161 ~~~~~~~~~~~~p~~Cp~~~~~~C~~~~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V 240 (474)
|.+......+..+...|. +.-.++++....+.|.|.|+|.|.|||.|+..|.|++||+++|++.+||||+|+|||||
T Consensus 157 Y~D~T~~~~~p~~svYPT---~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV 233 (818)
T KOG0479|consen 157 YRDATMLTTLPTGSVYPT---RDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRV 233 (818)
T ss_pred hcchheecccccCCcCCc---cCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCee
Confidence 333332223333334443 33345568888889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeCCCCCCccccceeEEEeecccccccccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhcccCcccchH
Q 011953 241 IVTGILTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLF 320 (474)
Q Consensus 241 ~v~GIl~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~ 320 (474)
.|.|+|+.-+.....+....|++++.||+|..+.+. ....++.+++.+++++.++ ++ .++.|+.|++|+|+||+
T Consensus 234 ~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~~l~ke-~~~~~t~~Di~~i~klsk~--kd---iFdlLa~SLAPSI~GH~ 307 (818)
T KOG0479|consen 234 NIVGIYRSLPGKSNGNTSGTFRTVLIANNIELLSKE-AAPDFTDEDIRNIKKLSKK--KD---IFDLLARSLAPSIYGHD 307 (818)
T ss_pred EEEEEEeeccCccCCcccceeEEEEEeccHHhhccc-ccccCChhhHHHHHHHHhc--CC---HHHHHhhccCcccccHH
Confidence 999999987654333445579999999999987654 3578899999999998764 23 35899999999999999
Q ss_pred HHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC--Cee
Q 011953 321 TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEW 398 (474)
Q Consensus 321 ~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 398 (474)
.+|+||++.|+||+++.+.+|.++||++||||+|+|.|+||+|+|++.+.+|+++-++|.++++.|||+++..+. |+.
T Consensus 308 ~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGER 387 (818)
T KOG0479|consen 308 YVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGER 387 (818)
T ss_pred HHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765 888
Q ss_pred eeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCCCCccC
Q 011953 399 MLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLCITF 473 (474)
Q Consensus 399 ~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~~ 473 (474)
.+++|++++|+.||+||||||+|+.-++.++|++||||+++|+|+|+.+++++||+||||+||. |+||+.++.++
T Consensus 388 RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~e 463 (818)
T KOG0479|consen 388 RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPME 463 (818)
T ss_pred hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhh
Confidence 8999999999999999999999999999999999999999999999999999999999999997 99999887653
No 4
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-79 Score=610.72 Aligned_cols=437 Identities=38% Similarity=0.602 Sum_probs=384.0
Q ss_pred HHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Q 011953 9 HLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIV 80 (474)
Q Consensus 9 ~~~~~~~fl~~~--------y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~ 80 (474)
...+|++||..| |..-|+.+... +.-+|.|++.||....+.||-.|-+.|.+++.+|++++.+++...
T Consensus 161 i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~----n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~~ 236 (854)
T KOG0477|consen 161 IARRFKNFLREYVDENGHNVYIERIRRMCEE----NRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLLH 236 (854)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhh----chHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 335599999988 55566666554 334899999999999999999999999999999999999887655
Q ss_pred hhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCCcccc
Q 011953 81 FDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPV 160 (474)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~ 160 (474)
+.. +......+|||+. .+| ...++|.+|..|+|+||.+.|+|++.|.|.|.+....|.|.+||...
T Consensus 237 ~p~-----yeri~~~ihvris--~lP-----~~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vl-- 302 (854)
T KOG0477|consen 237 YPN-----YERIHNEIHVRIS--DLP-----VCESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVL-- 302 (854)
T ss_pred CCC-----hhhcccceeeeee--cCC-----ccccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCcc--
Confidence 433 2345677999987 222 23468999999999999999999999999999999999999999654
Q ss_pred ccccccCccccCCCCCCCCCCCCCCCC-ceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceeeeCCe
Q 011953 161 YPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDD 239 (474)
Q Consensus 161 ~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~ 239 (474)
.+.+++.+...+|..||+ |.++ +|..+.+.+.|.+||+|+|||.|..++.|.+||+..|+|..||||.|+|||.
T Consensus 303 gPF~qs~n~evkp~~C~~-----cqSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdE 377 (854)
T KOG0477|consen 303 GPFVQSSNSEVKPGSCPE-----CQSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDE 377 (854)
T ss_pred CceeeccCceeCCCCCcc-----ccCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcc
Confidence 455677788889999997 6665 4888889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeCCCC--CCccccceeEEEeecccccccccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhcccCccc
Q 011953 240 VIVTGILTAKWSPDL--KDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVF 317 (474)
Q Consensus 240 V~v~GIl~~~~~~~~--~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~ 317 (474)
|.|||||...|+... +++.+.|.++++||||.+.+....-.+++.++ ++++|+..++.++ .++++.|++|+||
T Consensus 378 ievTGIy~nn~d~sLN~kngFpvfatvi~ANhV~~k~~~~~~~~ltded---~k~i~~lskd~~i--~~rIiaSiaPsIy 452 (854)
T KOG0477|consen 378 IEVTGIYTNNFDGSLNTKNGFPVFATVIEANHVVKKDGKFDVDELTDED---FKEIWELSKDPPI--KERIIASIAPSIY 452 (854)
T ss_pred eEEeeeecccccccccccCCccccceeheehhhhhhccccchhHHhHHH---HHHHHHHhcCccH--HHHHHHhhCchhh
Confidence 999999999887654 67788899999999998776433334455554 5556655555654 4779999999999
Q ss_pred chHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC--
Q 011953 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG-- 395 (474)
Q Consensus 318 G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 395 (474)
||+++|.|+.++|+||.++....+.++||++|+||+|+||||||++++++++.++++++++|.+++++|||+.+.++.
T Consensus 453 Gh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvt 532 (854)
T KOG0477|consen 453 GHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVT 532 (854)
T ss_pred chHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCcc
Confidence 999999999999999999999889999999999999999999999999999999999999999999999999999994
Q ss_pred CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCCCCccC
Q 011953 396 GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLCITF 473 (474)
Q Consensus 396 ~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~~ 473 (474)
++|.+++|+|++|++|||+|||||+|+..++..+|+|||||.++|+|+|+.++++++|.+|||+||. |+|||..++.+
T Consensus 533 rEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaq 611 (854)
T KOG0477|consen 533 REWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQ 611 (854)
T ss_pred ceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 89999887753
No 5
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-77 Score=584.84 Aligned_cols=445 Identities=33% Similarity=0.492 Sum_probs=377.7
Q ss_pred HHHHHHHHHHHHH-------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Q 011953 8 AHLKALAEFVIRH-------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIV 80 (474)
Q Consensus 8 ~~~~~~~~fl~~~-------y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~ 80 (474)
..+++|++|+..| |+++++..++. ..|+|.|+++||..||.+|++.|..+|.++|++|++|+.++.+..
T Consensus 27 ~v~~~fkefir~f~~~~~f~Yrd~L~~N~~~----~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad~i 102 (729)
T KOG0481|consen 27 QVKTKFKEFIRQFRTGTDFKYRDQLKRNYNL----GEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVADEI 102 (729)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHhcccc----cceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHhhh
Confidence 3456699999986 89998876554 679999999999999999999999999999999999999886631
Q ss_pred hhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCCcccc
Q 011953 81 FDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPV 160 (474)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~ 160 (474)
- - +.........+++|.+... .+..++|+|+++++.|||.|.|+|+.+|.|+.+.+.....|++|.+....
T Consensus 103 ~-~-~~~~~E~~~~d~Qv~L~sd-------a~p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~ 173 (729)
T KOG0481|consen 103 T-R-PRPSGEEVLHDIQVLLTSD-------ANPISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPN 173 (729)
T ss_pred c-C-CCcCCCccceeeEEEEecC-------CCcccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccc
Confidence 1 0 1111122234577777633 34467999999999999999999999999999999999999999987533
Q ss_pred ccccccCccccCCCCCCCCC--CCCCCCCceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceeeeCC
Q 011953 161 YPELETRNSIVLPSHCPSQR--SKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGD 238 (474)
Q Consensus 161 ~~~~~~~~~~~~p~~Cp~~~--~~~C~~~~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd 238 (474)
-..-..-..+..|..|.+.. ...|.-.+|.+.+++|.|+|+|.+|+||.|+.+|.|++||++.+.+++.|++++.||.
T Consensus 174 ~~~~pgl~g~~lPR~C~~~~~~k~~Cp~DPyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~ 253 (729)
T KOG0481|consen 174 VIMRPGLEGYALPRKCDTPQAGKPKCPLDPYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGN 253 (729)
T ss_pred eecCCCccccccccccCCcccCCCCCCCCCEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCc
Confidence 21101122477899996432 5789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeeeCCCCCCc----cccceeEEEeecccccccc---cCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhc
Q 011953 239 DVIVTGILTAKWSPDLKDV----RCDLDPVLIANHVRRTNEL---KSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRG 311 (474)
Q Consensus 239 ~V~v~GIl~~~~~~~~~~~----~~~~~~~i~a~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (474)
+|+|+|||.+......++. -..-.+|+++..|+..... ..--.+|+++.+.|+++... + ..|+.+..|
T Consensus 254 RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~ft~eEEEeFk~la~~----~-d~Ye~is~s 328 (729)
T KOG0481|consen 254 RVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMFTPEEEEEFKKLAAS----P-DVYERISKS 328 (729)
T ss_pred eEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccCChhHHHHHHHHhcC----c-cHHHHHhhc
Confidence 9999999998753322211 1122457777777644321 11236788888889887543 2 257899999
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
++|+|||++++|+|+.+.||||.++.+++|..+||++||||.|+|||+||+|++.+-+.+|-.+|++|.+++++|||+++
T Consensus 329 IAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 329 IAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred cCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCC
Q 011953 392 VKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPN 468 (474)
Q Consensus 392 ~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~ 468 (474)
.++. .+++++.|++++|+|||+||||||+|.++++.++|++||+|+++++|+|+++.++.|++|+||+||. |+||..
T Consensus 409 ~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~ 488 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDT 488 (729)
T ss_pred EecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcccccccc
Confidence 9997 5899999999999999999999999999999999999999999999999999999999999999998 999987
Q ss_pred CC
Q 011953 469 LC 470 (474)
Q Consensus 469 ~~ 470 (474)
++
T Consensus 489 Kt 490 (729)
T KOG0481|consen 489 KT 490 (729)
T ss_pred CC
Confidence 64
No 6
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-78 Score=591.70 Aligned_cols=451 Identities=32% Similarity=0.498 Sum_probs=371.7
Q ss_pred ChHHHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhhccCH--HHHHHHHhChHHHHHHHHHHHH
Q 011953 5 NVPAHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDP--EIAHLVFSKPADYLRFFEDAAI 74 (474)
Q Consensus 5 ~~~~~~~~~~~fl~~~--------y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p--~L~~~l~~~P~~~l~~~~~a~~ 74 (474)
++...-.+.+.||.+| |.++++++... ....+.||++|+.+++. +|...+.++..++..+|..|+.
T Consensus 9 D~~~dk~~~~~fl~e~~e~~~~~kY~~~L~eia~R----e~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vd 84 (721)
T KOG0482|consen 9 DYAADKNKIKKFLDEFYEDNELGKYMNQLQEIANR----EQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVD 84 (721)
T ss_pred hhhhhhHHHHHHHHhhhccCchhHHHHHHHHHhcc----cceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777776 77788887664 45689999999999983 7999999999999999999999
Q ss_pred HHHHHHhhhhh--h-----------------hhh---------hcccceEEEEEeeCCCCCCCCCCCcccccccccCCCc
Q 011953 75 WAHKIVFDELK--S-----------------CEK---------RVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGV 126 (474)
Q Consensus 75 ~~~~~~~~~~~--~-----------------~~~---------~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igk 126 (474)
+++.....+.+ . .+. ....+...+ ++.+. ......++|++++.++|+
T Consensus 85 ellp~~~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryel--yfk~~---~~~kp~svR~vka~~iG~ 159 (721)
T KOG0482|consen 85 ELLPEPTGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYEL--YFKPL---SNNKPYSVREVKADHIGS 159 (721)
T ss_pred HhcCCcccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhhee--eeccc---ccCCccchhhhhhhhccc
Confidence 87653221110 0 000 000111222 22210 111235789999999999
Q ss_pred EEEEEEEEEEecceeEEEEEEEEEecCCCCccccccccccCccccCCCCCCCCCCCCCCCCc-eEEeecceeEeeeeEEE
Q 011953 127 LLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTN-FQFVENSIICHDYQEIK 205 (474)
Q Consensus 127 Lv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~-~~~~~~~s~~~d~Q~ik 205 (474)
||+|+|+|+|+|+|||.+..++|.|..||.+ +|+.+.+ ..|.++..||+..|..-+... +.+..--|+|+.||++|
T Consensus 160 LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE--~yQeV~s-~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~k 236 (721)
T KOG0482|consen 160 LVTVRGIVTRVSDVKPSMVVATYTCDQCGAE--TYQEVNS-RTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVK 236 (721)
T ss_pred eEEEEEEEEeccccccceEEEEEecccccHh--hhccccC-ccccchhhCChHHhhhcccCCeEEEEecccccchhhhhh
Confidence 9999999999999999999999999999986 4666654 577778999984332222222 44444457999999999
Q ss_pred EeecccccCCCCcceeEEEEEecCccceeeeCCeEEEEEEEEeeeCCCCCCccc--cceeEEEeecccccccccCCCCCC
Q 011953 206 IQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGILTAKWSPDLKDVRC--DLDPVLIANHVRRTNELKSDIDIP 283 (474)
Q Consensus 206 iQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~v~GIl~~~~~~~~~~~~~--~~~~~i~a~~i~~~~~~~~~~~~~ 283 (474)
+||.++++|.|++||+++|+++++++.+|+|||.|.|+||+.+.+..+++..+. .-++|++|..|...++.+++++.+
T Consensus 237 mQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~~~~ 316 (721)
T KOG0482|consen 237 MQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNIEKT 316 (721)
T ss_pred HHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHhhhhhhcccccccccc
Confidence 999999999999999999999999999999999999999999888777654332 348999999998888777777666
Q ss_pred HHHHHHHHHHHHhhcCCCccchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHH
Q 011953 284 DDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQF 363 (474)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~l 363 (474)
.+...+..++.. ..+ .++.++.||+|+||||+++|+|+++.|+||+.+.+.+|+++||++||+|+|+||++||+|
T Consensus 317 ~~~~~~~~~~~~---~~d--~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQL 391 (721)
T KOG0482|consen 317 GELEPEELELIA---EGD--FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQL 391 (721)
T ss_pred ccccHHHHHHhh---ccc--HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHH
Confidence 655444444332 223 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEeCCCcccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEE
Q 011953 364 LKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA 441 (474)
Q Consensus 364 a~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~ 441 (474)
+++|.+++|++.|++|.++++.|||+++.++. |+..++.|+|++|++|||||||||+|...++.++|++||||+++|+
T Consensus 392 Lkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIa 471 (721)
T KOG0482|consen 392 LKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIA 471 (721)
T ss_pred HHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999997 8999999999999999999999999999999999999999999999
Q ss_pred EcCeeEeeCCCeEEEEeecCC-CCCCCCCCcc
Q 011953 442 KAGLVTTLSTRTIIFGATNPK-GHYDPNLCIT 472 (474)
Q Consensus 442 ~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~ 472 (474)
|+|+.+++++|++|+||+||. |+|||..|+-
T Consensus 472 KAGI~TtLNAR~sILaAANPayGRYnprrs~e 503 (721)
T KOG0482|consen 472 KAGINTTLNARTSILAAANPAYGRYNPRRSPE 503 (721)
T ss_pred hhccccchhhhHHhhhhcCccccccCcccChh
Confidence 999999999999999999997 9999988763
No 7
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-78 Score=605.48 Aligned_cols=438 Identities=33% Similarity=0.480 Sum_probs=376.0
Q ss_pred hHHHHHHHHHHHHHH---------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHH
Q 011953 6 VPAHLKALAEFVIRH---------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWA 76 (474)
Q Consensus 6 ~~~~~~~~~~fl~~~---------y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~ 76 (474)
+++-...|.+||.+| |...+.++..- . -..+.+|..||..+++.|+..++.+|+++++.|+.+++++
T Consensus 130 iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~-~---~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~ 205 (804)
T KOG0478|consen 130 IQECPENFDDFLRRFRGIDPLCPYYIKSLLELKEL-E---PEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEI 205 (804)
T ss_pred HHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHh-h---hhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHH
Confidence 455667799999987 77777666432 1 1256888899999999999999999999999999999998
Q ss_pred HHHHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCC
Q 011953 77 HKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKH 156 (474)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~ 156 (474)
+...+.. ....+.++||.+ ++ ....++|+|++++|+|||+|+|+|+|+|++.|.++++.|.|..|++
T Consensus 206 ~~e~~~~------~~~~~~i~vRPf------n~-~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~ 272 (804)
T KOG0478|consen 206 VLERYVL------EILEKSIKVRPF------NA-GKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGH 272 (804)
T ss_pred HHhhccc------cchhceeEeecc------Cc-ccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCc
Confidence 6543311 223456778865 22 2345799999999999999999999999999999999999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCCCCCCc-eEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceee
Q 011953 157 MFPVYPELETRNSIVLPSHCPSQRSKPCEGTN-FQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVK 235 (474)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~-~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~ 235 (474)
...+.. ..+.+..|..|+ .|+.+. |.++++.|.|.|.|.||+||.|+.+|.|.+|.++.|.+++||||+++
T Consensus 273 ~~~ve~---drg~i~eP~~C~-----~C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~ 344 (804)
T KOG0478|consen 273 EIAVES---DRGRIKEPMLCK-----ECGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVR 344 (804)
T ss_pred eEEEEe---ecCccCCCcccc-----cccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhccC
Confidence 865543 368899999996 588775 99999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeeeCCCC---CCccccceeEEEeeccccccccc--------CCCCCCHHHHHHHHHHHHhhcCCCccc
Q 011953 236 AGDDVIVTGILTAKWSPDL---KDVRCDLDPVLIANHVRRTNELK--------SDIDIPDDIIMQFKQFWSEFKDTPLKG 304 (474)
Q Consensus 236 pGd~V~v~GIl~~~~~~~~---~~~~~~~~~~i~a~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (474)
|||+|.|||||+..|-+.. ...++.|.+++.+.|+.+.+... .+..++.++++.+.++.++ + ..
T Consensus 345 pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elskr---p--di 419 (804)
T KOG0478|consen 345 PGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSKR---P--DI 419 (804)
T ss_pred CCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhcC---c--cH
Confidence 9999999999999875433 23445789999999997654311 1122334445555554322 2 25
Q ss_pred hhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc
Q 011953 305 RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS 384 (474)
Q Consensus 305 ~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~ 384 (474)
|+.|++|++|+|||+|++|+|++++||||+.+....+.++|+++||||+|+||||||+|++++++++++.+|++|.++++
T Consensus 420 y~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSa 499 (804)
T KOG0478|consen 420 YELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSA 499 (804)
T ss_pred HHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccch
Confidence 78999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 385 AGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 385 ~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+|||+.+.++. ++|.++.|+|+++++|+|||||||+|+...++.|||+||+|+++++|+|+.+++|+|++|||++||.
T Consensus 500 vGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 500 VGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred hcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 99999999965 8999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCCCCCCccC
Q 011953 463 -GHYDPNLCITF 473 (474)
Q Consensus 463 -~~~d~~~~~~~ 473 (474)
++|+|.+++.+
T Consensus 580 ~skynp~k~i~e 591 (804)
T KOG0478|consen 580 RSKYNPNKSIIE 591 (804)
T ss_pred cccCCCCCchhh
Confidence 89999999865
No 8
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1.1e-74 Score=614.95 Aligned_cols=433 Identities=27% Similarity=0.395 Sum_probs=360.0
Q ss_pred hHHHHHHhhcCC-------CCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhh-hhhhhcc
Q 011953 21 HSDQLRSITLSP-------DPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDELK-SCEKRVE 92 (474)
Q Consensus 21 y~~~i~~~~~~~-------~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~-~~~~~~~ 92 (474)
|...|.+++... ++ .+.+|.||++||..|+|.|+++|+++|.+++++|++|+.+++...+.+.. .......
T Consensus 123 y~~~~~~~~~~~~~~~~~~~~-~~~sl~Vd~~~l~~fd~~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~ 201 (915)
T PTZ00111 123 YLWKLMNFIKENLRDHSTGYS-RILPFEVDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENN 201 (915)
T ss_pred HHHHHHHHHHHhhhccccccc-CCceEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccc
Confidence 667777776641 12 24699999999999999999999999999999999999887653222111 0000111
Q ss_pred cceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecC-----------CCCccccc
Q 011953 93 KKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRK-----------CKHMFPVY 161 (474)
Q Consensus 93 ~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~-----------C~~~~~~~ 161 (474)
...++||++ +.| ....+|+|++.++||||+|+|+|+|+|.|+|.++.++|.|.. |++.....
T Consensus 202 ~~~~~vr~~------n~~-~~~~iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~ 274 (915)
T PTZ00111 202 SFFPRARLM------NKP-VSDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEY 274 (915)
T ss_pred cceEEEEEe------CCC-CCCCcccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCcccccc
Confidence 224788887 233 235789999999999999999999999999999999999996 66443221
Q ss_pred cccccCccccCCCCCCCCCCCCCCCCc-eEEeecceeEeeeeEEEEeecccccCCCCcc--------------------e
Q 011953 162 PELETRNSIVLPSHCPSQRSKPCEGTN-FQFVENSIICHDYQEIKIQESTQVLGVGVIP--------------------R 220 (474)
Q Consensus 162 ~~~~~~~~~~~p~~Cp~~~~~~C~~~~-~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p--------------------~ 220 (474)
...+.+..|..||. |+++. |.++.++|.|+|||+|+|||.|+.+|.|++| +
T Consensus 275 ---~~~g~~~~P~~C~~-----C~~~~~f~l~~~~s~f~D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~r 346 (915)
T PTZ00111 275 ---VIQGEVNEPLLCNE-----CNSKYTFELNHNMCVYSTKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNE 346 (915)
T ss_pred ---ccCCcccCCCCCCC-----CCCCCCeEEccCccEEEeeeEEEEeeCcccCCCCCCCccccccccccccccccccCCc
Confidence 12457778999974 98764 9999999999999999999999999999999 9
Q ss_pred eEEEEEecCccceeeeCCeEEEEEEEEeeeCCCC---CCccccceeEEEeecccccccc------------cCCCCCCHH
Q 011953 221 SILVILKDDLVDIVKAGDDVIVTGILTAKWSPDL---KDVRCDLDPVLIANHVRRTNEL------------KSDIDIPDD 285 (474)
Q Consensus 221 ~i~v~l~~dlv~~~~pGd~V~v~GIl~~~~~~~~---~~~~~~~~~~i~a~~i~~~~~~------------~~~~~~~~~ 285 (474)
+++|+|++||||.|+|||+|+|+||++..+.... +.....+++++.|++|+..+.. ..+..++++
T Consensus 347 si~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~~~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~e 426 (915)
T PTZ00111 347 VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDL 426 (915)
T ss_pred eEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccccccceEEEEEEEEEeccccccccccccccccccccCCHH
Confidence 9999999999999999999999999998764221 1233568999999999754321 123568999
Q ss_pred HHHHHHHHHHhhcCCCccchhhhhhcccCcccchHHHHHHHHhhhhCCceee-----cCCC----CceeccccceecCCC
Q 011953 286 IIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHV-----DASG----TKVRGESHLLLVGDP 356 (474)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~-----~~~~----~~~r~~~~iLL~G~p 356 (474)
++++|+++.+. + ..++.|++|++|.|+|++.+|+||+++|+||+.+. .++| .++|+++||||+|+|
T Consensus 427 d~~~I~~ls~~----p-~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDP 501 (915)
T PTZ00111 427 QVYKILELSRN----P-MIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDP 501 (915)
T ss_pred HHHHHHHHhcC----H-HHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCC
Confidence 99999887542 2 25688999999999999999999999999998653 2344 789999999999999
Q ss_pred CcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE-ee--CCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHH
Q 011953 357 GTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV-KD--GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAM 433 (474)
Q Consensus 357 GtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~m 433 (474)
|||||++|+++++++++..|+++...+..++++... .+ .|.|..++|++++|++|+|||||+++|++..|.+|+++|
T Consensus 502 GTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaM 581 (915)
T PTZ00111 502 GTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVM 581 (915)
T ss_pred CccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHH
Confidence 999999999999999999999998888888888765 33 277999999999999999999999999999999999999
Q ss_pred HhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCCCCccCC
Q 011953 434 EQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLCITFQ 474 (474)
Q Consensus 434 e~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~~~ 474 (474)
|+|+++++++|+..+++++++||||+||. |+||+.+++.+|
T Consensus 582 EqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~en 623 (915)
T PTZ00111 582 EQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN 623 (915)
T ss_pred hCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccc
Confidence 99999999999999999999999999997 999999999876
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=6.4e-65 Score=531.34 Aligned_cols=350 Identities=39% Similarity=0.633 Sum_probs=307.2
Q ss_pred cccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCCccccccccccCccccCCCCCCCCCCCCCCCCc-eEEe
Q 011953 114 PSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTN-FQFV 192 (474)
Q Consensus 114 ~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~-~~~~ 192 (474)
.++|+|++.++||||+|+|+|+|+|.|+|++++++|+|.+||+.+.+.. +.+.+..|..||+ ..|++++ |.++
T Consensus 3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~---~~~~~~~p~~C~~---~~C~~~~~f~l~ 76 (509)
T smart00350 3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEI---QSGRETEPTVCPP---RECQSPTPFSLN 76 (509)
T ss_pred CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEe---cCCcccCCCcCCC---CcCCCCCceEec
Confidence 3579999999999999999999999999999999999999999875542 3467888999986 4688764 8899
Q ss_pred ecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceeeeCCeEEEEEEEEee-eCCCC--CCccccceeEEEeec
Q 011953 193 ENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGILTAK-WSPDL--KDVRCDLDPVLIANH 269 (474)
Q Consensus 193 ~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~v~GIl~~~-~~~~~--~~~~~~~~~~i~a~~ 269 (474)
.+.|.|+|||+|+|||.++++|.|.+||+++|+|++||||+|+|||+|.|+|||+.+ |.... .+....+.+++.|++
T Consensus 77 ~~~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~ 156 (509)
T smart00350 77 HERSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANH 156 (509)
T ss_pred cCCCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeE
Confidence 999999999999999999999999999999999999999999999999999999987 33221 122234789999999
Q ss_pred cccccc--ccCC-----CCCCHHHHHHHHHHHHhhcCCCccchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCC
Q 011953 270 VRRTNE--LKSD-----IDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGT 342 (474)
Q Consensus 270 i~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~ 342 (474)
|+..+. .+.+ ..+++++++.|.++++. + ..++.|+++++|.|+|++.+|+|++++|+||..+...+|.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~-~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~ 231 (509)
T smart00350 157 VRKLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKD----P-DIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGM 231 (509)
T ss_pred EEEccccccccccccccccCCHHHHHHHHHHhcC----H-HHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCc
Confidence 987543 1111 25788888888887642 2 2468899999999999999999999999999888888899
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCC
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDS 420 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~ 420 (474)
++|++.||||+|+||||||++|+++++++++..++.+...+.+++++...++. ++|.+++|++++|++|+|||||+++
T Consensus 232 ~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~ 311 (509)
T smart00350 232 KIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDK 311 (509)
T ss_pred cccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhh
Confidence 99999999999999999999999999999998888877777788888766663 7889999999999999999999999
Q ss_pred CChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCCCCccCC
Q 011953 421 MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLCITFQ 474 (474)
Q Consensus 421 ~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~~~ 474 (474)
+++..|.+|+++||++.+++.++|....++++++||||+||. |+||+.+++.+|
T Consensus 312 l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 312 MDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 999999999999999999999999999999999999999997 999999888764
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=2.5e-37 Score=306.48 Aligned_cols=172 Identities=58% Similarity=0.961 Sum_probs=144.8
Q ss_pred cchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCc
Q 011953 303 KGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS 382 (474)
Q Consensus 303 ~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~ 382 (474)
..++.++++++|+|+|++.+|+|++++|++|+.+..++|...|+++|+||+|+||||||+|++++++++|+++++.+.++
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~ 92 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGS 92 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGS
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCc
Confidence 35789999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeec
Q 011953 383 TSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (474)
Q Consensus 383 ~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatN 460 (474)
+.+|||++..++. ++|.+++|++++|++|||||||+|+|..+++.+|+++||+|+++++++|+..+++++++|+||+|
T Consensus 93 s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~N 172 (331)
T PF00493_consen 93 SAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAAN 172 (331)
T ss_dssp TCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE-
T ss_pred ccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHh
Confidence 9999999998873 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCCccCC
Q 011953 461 PK-GHYDPNLCITFQ 474 (474)
Q Consensus 461 p~-~~~d~~~~~~~~ 474 (474)
|. |+||+.+++.+|
T Consensus 173 P~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 173 PKFGRYDPNKSLSEN 187 (331)
T ss_dssp -TT--S-TTS-CGCC
T ss_pred hhhhhcchhhhhHHh
Confidence 98 899999998875
No 11
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.88 E-value=3.3e-22 Score=181.25 Aligned_cols=139 Identities=27% Similarity=0.416 Sum_probs=99.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe----CCCcccCC--
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT----GLGSTSAG-- 386 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~----~~~~~~~~-- 386 (474)
+.+|.||+.+|+|+++++.|+ +|+||+||||||||++|+.+..++|.-...- ...-+..+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~--------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG--------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S
T ss_pred hhhhcCcHHHHHHHHHHHcCC--------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCC
Confidence 358999999999999999996 7899999999999999999998877421111 00001111
Q ss_pred ----ceE-------------EEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEee
Q 011953 387 ----LTV-------------TAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTL 449 (474)
Q Consensus 387 ----l~~-------------~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~ 449 (474)
+.. ..+.+ |.....+|.+.+|++||||+||+..+++...++|++.||++.+++.+.+...++
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liG-gg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIG-GGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHE-EGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred CCCceecCCCcccCCCCcCHHHHhC-CCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEE
Confidence 000 00011 334678999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCC--CCCC
Q 011953 450 STRTIIFGATNPK--GHYD 466 (474)
Q Consensus 450 ~~~~~viaatNp~--~~~d 466 (474)
|++|.+|||+||+ |.|.
T Consensus 147 Pa~f~lv~a~NPcpCG~~~ 165 (206)
T PF01078_consen 147 PARFLLVAAMNPCPCGYYG 165 (206)
T ss_dssp B--EEEEEEE-S-------
T ss_pred ecccEEEEEeccccccccc
Confidence 9999999999994 7664
No 12
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.8e-19 Score=176.27 Aligned_cols=140 Identities=26% Similarity=0.364 Sum_probs=111.9
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE----------EEe-CCC
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV----------ITT-GLG 381 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~----------~~~-~~~ 381 (474)
+.+|.|++.+|+|+..+..|| +|+||+||||||||+||+.+..++|.-. +.. +..
T Consensus 178 ~~DV~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~ 243 (490)
T COG0606 178 FKDVKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDL 243 (490)
T ss_pred hhhhcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccc
Confidence 357899999999999999998 8999999999999999999998776410 000 000
Q ss_pred cc-------------cCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEe
Q 011953 382 ST-------------SAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTT 448 (474)
Q Consensus 382 ~~-------------~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~ 448 (474)
.. ....+...+.+ |....++|.+.+|++||+||||+-.......++|.+-||++.+.|++++....
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~~aLvG-GG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ 322 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASLAALVG-GGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322 (490)
T ss_pred cccCccceeCCccCCCccchHHHHhC-CCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeE
Confidence 00 00111111222 33567899999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeecCC--CCCCC
Q 011953 449 LSTRTIIFGATNPK--GHYDP 467 (474)
Q Consensus 449 ~~~~~~viaatNp~--~~~d~ 467 (474)
++++|.+++||||+ |.+..
T Consensus 323 ypa~Fqlv~AmNpcpcG~~~~ 343 (490)
T COG0606 323 YPARFQLVAAMNPCPCGNLGA 343 (490)
T ss_pred EeeeeEEhhhcCCCCccCCCC
Confidence 99999999999995 76643
No 13
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.73 E-value=1.4e-17 Score=164.08 Aligned_cols=142 Identities=27% Similarity=0.360 Sum_probs=109.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCC------------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL------------ 380 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~------------ 380 (474)
+.+|.|++.+|++++++++.. +..|+||.|+||||||+++++++++.|.-....+.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 457899999999999887631 01579999999999999999999998631110000
Q ss_pred ---------------------CcccCCceEEEEe----eCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 381 ---------------------GSTSAGLTVTAVK----DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 381 ---------------------~~~~~~l~~~~~~----~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+...+.+...- ..|++.+.+|.+..+++|++|+||++.++++.|+.|+++|++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 0011112211110 026778899999999999999999999999999999999999
Q ss_pred cEEEEEEcCeeEeeCCCeEEEEeecCC-CCCC
Q 011953 436 QTISVAKAGLVTTLSTRTIIFGATNPK-GHYD 466 (474)
Q Consensus 436 ~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d 466 (474)
+.+++.+.|....++.++.++||+||. +.+.
T Consensus 155 ~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~ 186 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNPEEGELR 186 (334)
T ss_pred CCeEEEECCeEEecCCCEEEEecCCcccCCCC
Confidence 998888999999999999999999995 4443
No 14
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.68 E-value=7.8e-17 Score=167.10 Aligned_cols=139 Identities=27% Similarity=0.380 Sum_probs=108.7
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce----EEEeCCCcccCCce-
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITTGLGSTSAGLT- 388 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~----~~~~~~~~~~~~l~- 388 (474)
.+|+|++.+++++..++.+| .|++|+||||||||++++.++.+.+.. .+......+..+..
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g--------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~ 257 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGG--------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLI 257 (499)
T ss_pred HHhcCcHHHHhhhhhhccCC--------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhc
Confidence 46789999999999888775 789999999999999999999876531 11111111111110
Q ss_pred ------------------EEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeC
Q 011953 389 ------------------VTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (474)
Q Consensus 389 ------------------~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~ 450 (474)
..... +|.+...+|.+.+|++|+|||||++.+++..+..|+++||++.+.+.+.|....++
T Consensus 258 ~~~~~~~~Pf~~p~~s~s~~~~~-ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~p 336 (499)
T TIGR00368 258 DRKQIKQRPFRSPHHSASKPALV-GGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYP 336 (499)
T ss_pred cccccccCCccccccccchhhhh-CCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceecc
Confidence 00001 13455789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCC--CCCCC
Q 011953 451 TRTIIFGATNPK--GHYDP 467 (474)
Q Consensus 451 ~~~~viaatNp~--~~~d~ 467 (474)
+++++|||+||+ |+|+.
T Consensus 337 a~frlIaa~Npcpcg~~~~ 355 (499)
T TIGR00368 337 ARFQLVAAMNPCPCGHYGG 355 (499)
T ss_pred CCeEEEEecCCcccCcCCC
Confidence 999999999993 88864
No 15
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.67 E-value=1.1e-16 Score=158.05 Aligned_cols=144 Identities=24% Similarity=0.379 Sum_probs=109.3
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCC----Cc-----
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL----GS----- 382 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~----~~----- 382 (474)
-+.+|+|++.+|+|++++++.+ .+ .++||.|++|||||+++|.++++++..-...+. ..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p---------~~---~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~ 82 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP---------KI---GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPEL 82 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC---------CC---CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhh
Confidence 3458999999999999999874 11 359999999999999999999887642111000 00
Q ss_pred ----------------------c----cCCceEEEE---------eeCCeeeeeccccccCCceEEEEcCCCCCChHhHH
Q 011953 383 ----------------------T----SAGLTVTAV---------KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (474)
Q Consensus 383 ----------------------~----~~~l~~~~~---------~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~ 427 (474)
. ..+.+...+ ..++.+.+.+|.+..|++|+||+||++.+++..|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~ 162 (350)
T CHL00081 83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVD 162 (350)
T ss_pred hchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHH
Confidence 0 001111111 11245566899999999999999999999999999
Q ss_pred HHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCC
Q 011953 428 TIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDP 467 (474)
Q Consensus 428 ~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~ 467 (474)
.|+++|+++..++.+.|....++.++.++||.||. +.+.+
T Consensus 163 ~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~ 203 (350)
T CHL00081 163 ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRP 203 (350)
T ss_pred HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCH
Confidence 99999999988888999888999999999999996 55543
No 16
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.67 E-value=2.5e-16 Score=155.60 Aligned_cols=142 Identities=26% Similarity=0.363 Sum_probs=110.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeC-------------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG------------- 379 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~------------- 379 (474)
+..|+|++.+|.+++++++.+. .-|+||.|+||+|||+++++++.+.+......+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 4578999999999999998741 146999999999999999999988743110000
Q ss_pred ---------------------------CCcccCCceEEEEe----eCCeeeeeccccccCCceEEEEcCCCCCChHhHHH
Q 011953 380 ---------------------------LGSTSAGLTVTAVK----DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRAT 428 (474)
Q Consensus 380 ---------------------------~~~~~~~l~~~~~~----~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~ 428 (474)
.+.+...+++...- ..|.+.+.+|.+..|++|++||||++.+++..|..
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~ 150 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDV 150 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHH
Confidence 00111122222111 13778899999999999999999999999999999
Q ss_pred HHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCC
Q 011953 429 IHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYD 466 (474)
Q Consensus 429 l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d 466 (474)
|+++|+++.+++.+.|....++.++.++||+||. +.+.
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~ 189 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELR 189 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCC
Confidence 9999999988888999988999999999999996 5553
No 17
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.66 E-value=5.2e-16 Score=129.43 Aligned_cols=109 Identities=24% Similarity=0.368 Sum_probs=77.2
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeCCCc--ccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS--TSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREH 424 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~--~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~ 424 (474)
|+||.|+||+|||++++++|+..+..+..+.... ..+++....+-+. +.+.+.+|.+.. +|+++|||++.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~---~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFT---NILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-S---SEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhh---ceeeecccccCCHH
Confidence 7999999999999999999999987766543321 1234444444442 678888888874 59999999999999
Q ss_pred hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 425 ~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.|++|+++|+++.++ -.|....++..+.||||.||.
T Consensus 78 tQsAlLeam~Er~Vt--~~g~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 TQSALLEAMEERQVT--IDGQTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp HHHHHHHHHHHSEEE--ETTEEEE--SS-EEEEEE-TT
T ss_pred HHHHHHHHHHcCeEE--eCCEEEECCCcEEEEEecCcc
Confidence 999999999999998 478889999999999999994
No 18
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.64 E-value=5.5e-16 Score=166.63 Aligned_cols=142 Identities=25% Similarity=0.332 Sum_probs=112.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC--------------------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-------------------- 372 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~-------------------- 372 (474)
+..|+|++.+|++++++++.+. ..+|||.|+||||||++|++++++++
T Consensus 3 f~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 4589999999999999998740 13599999999999999999999985
Q ss_pred ---------------ceEEEeCCCcccCCceEEEE----eeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHH
Q 011953 373 ---------------RSVITTGLGSTSAGLTVTAV----KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAM 433 (474)
Q Consensus 373 ---------------~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~m 433 (474)
.++.......+...|..... ...|.+...+|.+..|++|||||||++++++..++.|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 23333322222222222110 11255677899999999999999999999999999999999
Q ss_pred HhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCC
Q 011953 434 EQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYD 466 (474)
Q Consensus 434 e~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d 466 (474)
+++.+.+.+.|....++.++.+|||+||. +.+.
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~ 184 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLR 184 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCCCCCC
Confidence 99999999999999999999999999996 5553
No 19
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.64 E-value=2.9e-16 Score=162.04 Aligned_cols=139 Identities=27% Similarity=0.434 Sum_probs=108.4
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce----EEEe-CCCc------
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITT-GLGS------ 382 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~----~~~~-~~~~------ 382 (474)
.+++|++.+++++.+++.+| .|++|+||||+|||++++.++.+.+.. .... ...+
T Consensus 191 ~~v~Gq~~~~~al~laa~~G--------------~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~ 256 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGG--------------HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAES 256 (506)
T ss_pred EEEECcHHHHhhhheeccCC--------------cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcccc
Confidence 36789999999998877765 789999999999999999999876531 1111 0000
Q ss_pred ccCCc------------eEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeC
Q 011953 383 TSAGL------------TVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (474)
Q Consensus 383 ~~~~l------------~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~ 450 (474)
...++ +...+. +|.+...+|.+.+|++|+|||||++.+++..+..|+++||++.+++.+.|....++
T Consensus 257 ~~~~~~~rPfr~ph~~~s~~~l~-GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~p 335 (506)
T PRK09862 257 VQKQWRQRPFRSPHHSASLTAMV-GGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYP 335 (506)
T ss_pred ccCCcCCCCccCCCccchHHHHh-CCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceecc
Confidence 00011 000011 14566889999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCC--CCCCC
Q 011953 451 TRTIIFGATNPK--GHYDP 467 (474)
Q Consensus 451 ~~~~viaatNp~--~~~d~ 467 (474)
+++.+|||+||+ |.|+.
T Consensus 336 a~f~lIAa~NP~pcG~~~~ 354 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQG 354 (506)
T ss_pred CCEEEEEeecCccceecCC
Confidence 999999999994 77753
No 20
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.2e-16 Score=151.26 Aligned_cols=115 Identities=25% Similarity=0.326 Sum_probs=77.6
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeecccccc-CCceEEEEcCCCCC
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL-ADGGLCCIDEFDSM 421 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~-a~~gil~iDEid~~ 421 (474)
.+.++.+||||||||||||+|||++|+.....|+.+. ++.|...++.++...+-+...+.. ..++|+||||||.+
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv----gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV----GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec----cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 3566788999999999999999999999988877652 223333333332221111112221 25789999999986
Q ss_pred -----------ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 422 -----------REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 422 -----------~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
..+.|..+++.+.+ .+|-.. ..++-||+|||++..+|||.
T Consensus 257 g~kR~d~~t~gDrEVQRTmleLL~q------lDGFD~--~~nvKVI~ATNR~D~LDPAL 307 (406)
T COG1222 257 GAKRFDSGTSGDREVQRTMLELLNQ------LDGFDP--RGNVKVIMATNRPDILDPAL 307 (406)
T ss_pred hcccccCCCCchHHHHHHHHHHHHh------ccCCCC--CCCeEEEEecCCccccChhh
Confidence 23467888888875 333322 34678999999988888763
No 21
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.62 E-value=1.1e-15 Score=150.52 Aligned_cols=145 Identities=22% Similarity=0.354 Sum_probs=113.7
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc------
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS------ 384 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~------ 384 (474)
..+..+.|++.+|+++++..+.. .+ -++|+.|+.|||||+++|+++.++|.-..+.++-...
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P---------~i---ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP---------QI---GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc---------cc---ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 45667899999999999887653 11 3499999999999999999999988644333431100
Q ss_pred ---------------------------CCceE--E-EEe--------eCCeeeeeccccccCCceEEEEcCCCCCChHhH
Q 011953 385 ---------------------------AGLTV--T-AVK--------DGGEWMLEAGALVLADGGLCCIDEFDSMREHDR 426 (474)
Q Consensus 385 ---------------------------~~l~~--~-~~~--------~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~ 426 (474)
.++++ . ++. ..|...+.||.|..|++||+++||++.+.+..+
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 01111 1 110 115567889999999999999999999999999
Q ss_pred HHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCC
Q 011953 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDP 467 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~ 467 (474)
+.|+++++.|.-.+.+.|+...+++++.+|||+||. |.+-|
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrp 203 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRP 203 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccch
Confidence 999999999877788999999999999999999996 66643
No 22
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.59 E-value=8.5e-16 Score=130.43 Aligned_cols=111 Identities=30% Similarity=0.435 Sum_probs=82.2
Q ss_pred HHHHHHHHHH-----hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhh--
Q 011953 11 KALAEFVIRH-----HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDE-- 83 (474)
Q Consensus 11 ~~~~~fl~~~-----y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~-- 83 (474)
++|.+||.+| |.++|++++.. .+++|.|||+||.+|+|.||++|+++|.+++++|++|+++++......
T Consensus 3 ~~F~~Fl~~f~~~~~Y~~~l~~~~~~----~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~ 78 (121)
T PF14551_consen 3 RRFREFLREFKEEPKYMDQLREMIQR----NKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFPSEQ 78 (121)
T ss_dssp HHHHHHCCCH-TS-CCHHHHHHHHHH----T-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT-----
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHc----CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 5699999986 99999999885 467999999999999999999999999999999999999987632110
Q ss_pred -hhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEE
Q 011953 84 -LKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKG 132 (474)
Q Consensus 84 -~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G 132 (474)
............++|++.. .| ...++|+|++.++||||+|+|
T Consensus 79 ~~~~~~~~~~~~~~~v~~~~------~~-~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 79 QSSFPPELKRRKEIQVRFYN------LP-KSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp -----GCCTTTS--EEEEES-------S--EE-GGG-SGGGTTSEEEEEE
T ss_pred ccCCchhhccceeEEEEEcC------CC-CCcCcCCCChHHCCCEEEEeC
Confidence 0001112334668888872 22 457899999999999999999
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.59 E-value=6.1e-15 Score=134.84 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=80.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
-..+++||+.++..+...+-.... .+ ..-.|+||+||||+|||+||+.||+..+..+..+....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~----r~---~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~--------- 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK----RG---EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA--------- 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC----TT---S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC---------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh----cC---CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchh---------
Confidence 445789999998876543322100 01 11258999999999999999999999998776532110
Q ss_pred EeeCCeeeeeccccc-cCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEE-cC---eeEeeC-CCeEEEEeecCCCCC
Q 011953 392 VKDGGEWMLEAGALV-LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAK-AG---LVTTLS-TRTIIFGATNPKGHY 465 (474)
Q Consensus 392 ~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~-~g---~~~~~~-~~~~viaatNp~~~~ 465 (474)
....+. -++.+. ...+.|+|||||+++++..+..|+.+||++.+.+-- .| ....++ .+|.+|+||+..|.+
T Consensus 86 i~k~~d---l~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~l 162 (233)
T PF05496_consen 86 IEKAGD---LAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLL 162 (233)
T ss_dssp --SCHH---HHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCT
T ss_pred hhhHHH---HHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccccc
Confidence 100000 011111 235679999999999999999999999999986532 22 112222 369999999987655
Q ss_pred C
Q 011953 466 D 466 (474)
Q Consensus 466 d 466 (474)
.
T Consensus 163 s 163 (233)
T PF05496_consen 163 S 163 (233)
T ss_dssp S
T ss_pred c
Confidence 3
No 24
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.58 E-value=5.4e-15 Score=157.30 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=107.1
Q ss_pred HHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce--EEEeCCCcccCCceEEEE----e
Q 011953 320 FTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLGSTSAGLTVTAV----K 393 (474)
Q Consensus 320 ~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~--~~~~~~~~~~~~l~~~~~----~ 393 (474)
+.+|.|+++..+.+. --||||.|+||||||++|+++++.++.. +.......+...|..... .
T Consensus 1 ~~~~~Al~l~av~p~------------~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPS------------LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCC------------cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 467999999988851 1469999999999999999999998763 554443333333333211 1
Q ss_pred eCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 394 DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 394 ~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
..+.+.+.+|.+..+++|++||||++.+++..|..|+++|+++.+++.+.|....++.+|.+|||+||.
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~ 137 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPA 137 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCc
Confidence 136678889999999999999999999999999999999999999999999999999999999999995
No 25
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.56 E-value=4.5e-15 Score=129.15 Aligned_cols=115 Identities=28% Similarity=0.421 Sum_probs=83.3
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeCCCc--ccCCceEEEEeeCCeeeeeccccccC--CceEEEEcCCCCCChH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS--TSAGLTVTAVKDGGEWMLEAGALVLA--DGGLCCIDEFDSMREH 424 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~g~l~~a--~~gil~iDEid~~~~~ 424 (474)
||||+||||||||++++.+++..+.+++...... +...|.....-..+...+..|.++.+ ++++++|||+++++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 5899999999999999999999988776654433 33344444443345555667777765 7899999999999999
Q ss_pred hHHHHHHHHHhcEEEEEEcCeeEeeCC------CeEEEEeecCCC
Q 011953 425 DRATIHEAMEQQTISVAKAGLVTTLST------RTIIFGATNPKG 463 (474)
Q Consensus 425 ~~~~l~~~me~~~~~i~~~g~~~~~~~------~~~viaatNp~~ 463 (474)
.+..|+.+++++.+.+...+.....+. .+++|||+||.+
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 999999999999887655554444443 499999999976
No 26
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=144.26 Aligned_cols=141 Identities=23% Similarity=0.294 Sum_probs=112.8
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc-
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS- 384 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~- 384 (474)
..+...+.+.++|.+.++..++.++..| .|+||.||||||||++++.+|+..+.+++...+....
T Consensus 16 ~~~~~~~~~~~~g~~~~~~~~l~a~~~~--------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~ 81 (329)
T COG0714 16 GKIRSELEKVVVGDEEVIELALLALLAG--------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLL 81 (329)
T ss_pred HHHHhhcCCeeeccHHHHHHHHHHHHcC--------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 3456677788999999999999998886 7799999999999999999999999877776554432
Q ss_pred -CCceEEEEee-----CCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 385 -AGLTVTAVKD-----GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 385 -~~l~~~~~~~-----~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
..++...... .+.+.+..|.+..+..+++++|||++.+++.+++|+++|+++.+++...+. ..++..+.++||
T Consensus 82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~viaT 160 (329)
T COG0714 82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIAT 160 (329)
T ss_pred HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEEc
Confidence 2222222211 456778889988887799999999999999999999999999888643332 677888999999
Q ss_pred ecC
Q 011953 459 TNP 461 (474)
Q Consensus 459 tNp 461 (474)
+||
T Consensus 161 ~Np 163 (329)
T COG0714 161 QNP 163 (329)
T ss_pred cCc
Confidence 997
No 27
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.54 E-value=5.9e-14 Score=136.59 Aligned_cols=120 Identities=24% Similarity=0.302 Sum_probs=91.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccC--CceEEE---EeeC-CeeeeeccccccC--CceEEEEcCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA--GLTVTA---VKDG-GEWMLEAGALVLA--DGGLCCIDEFD 419 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~--~l~~~~---~~~~-~~~~~~~g~l~~a--~~gil~iDEid 419 (474)
.||||.|+||||||++++.+|+.++.+++.+....... .+.... .+++ ..+.+..|.+..| +++++++||+|
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin 144 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYD 144 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhh
Confidence 57999999999999999999999998887765444322 233321 2232 2355677888665 67889999999
Q ss_pred CCChHhHHHHHHHHH-hcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCC
Q 011953 420 SMREHDRATIHEAME-QQTISVAKAGLVTTLSTRTIIFGATNPKGHYDP 467 (474)
Q Consensus 420 ~~~~~~~~~l~~~me-~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~ 467 (474)
.++++.+..|+.++| .+.+++...+.....+..|++|||+||.+.-|.
T Consensus 145 ~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~ 193 (327)
T TIGR01650 145 AGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDT 193 (327)
T ss_pred ccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCC
Confidence 999999999999999 568887665655555668999999999764443
No 28
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-14 Score=146.54 Aligned_cols=140 Identities=23% Similarity=0.313 Sum_probs=106.0
Q ss_pred hhcccCcccchHHHHH-HHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCccc
Q 011953 309 LRGICPQVFGLFTVKL-AVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTS 384 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~-ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~ 384 (474)
+..-+.+|+|....-. ++..+-.. .+.+.+||+.|++||||..+|++||+.++| +++..+|....
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 4567788888665433 33322211 133578999999999999999999999986 78888877654
Q ss_pred CCceEEEEee----C--C-eeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEE
Q 011953 385 AGLTVTAVKD----G--G-EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (474)
Q Consensus 385 ~~l~~~~~~~----~--~-~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~via 457 (474)
..|..+-+.+ . | ....++|.+..|++|++|+|||..|+...|..|+.+++++.+. +-|.....+.+++|||
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIA 386 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIA 386 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEE--ecCCCCceeeEEEEEe
Confidence 4332221111 0 1 1113688999999999999999999999999999999999886 7888888899999999
Q ss_pred eecC
Q 011953 458 ATNP 461 (474)
Q Consensus 458 atNp 461 (474)
|||.
T Consensus 387 ATN~ 390 (560)
T COG3829 387 ATNR 390 (560)
T ss_pred ccCc
Confidence 9997
No 29
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-14 Score=145.05 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=104.8
Q ss_pred cccchHHHHHHHHhhh--hCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceE
Q 011953 315 QVFGLFTVKLAVALTL--IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTV 389 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l--~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~ 389 (474)
.|+|...+-+.++..+ +. +++.+|||.|++||||..+||+||+.+++ +++..++......|-.
T Consensus 224 ~iIG~S~am~~ll~~i~~VA------------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVA------------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred cceecCHHHHHHHHHHHHHh------------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence 6788777666555333 22 33578999999999999999999999985 6777777665433322
Q ss_pred EEEee----C--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 390 TAVKD----G--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 390 ~~~~~----~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+-+.+ . |-..-+.|.+.+|+||++|+|||..|+...|..|+.++++|.+. +.|...+++.+++||||||+
T Consensus 292 SELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEie--RvG~~r~ikVDVRiIAATNR 367 (550)
T COG3604 292 SELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIE--RVGGDRTIKVDVRVIAATNR 367 (550)
T ss_pred HHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhccee--ecCCCceeEEEEEEEeccch
Confidence 21211 1 33445678899999999999999999999999999999999876 88999999999999999997
No 30
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.52 E-value=3.8e-14 Score=143.93 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=100.9
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce--EEEe-CCCc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITT-GLGS 382 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~--~~~~-~~~~ 382 (474)
..+.+.+...|+|++++.+.++.++.+| .|+||.||||||||++|+++++.+... +... ..++
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aalag--------------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft 77 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 77 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHccC--------------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec
Confidence 4577888899999999999999888886 789999999999999999999987542 1111 1111
Q ss_pred ccCCceEEE----EeeCCeee-eeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEE
Q 011953 383 TSAGLTVTA----VKDGGEWM-LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (474)
Q Consensus 383 ~~~~l~~~~----~~~~~~~~-~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~via 457 (474)
+...+.+.. .++.+.+. ...|.+..++ ++|+|||+++++..|++|+++|+++.++. ++....++.++.++|
T Consensus 78 tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~A 153 (498)
T PRK13531 78 TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTA 153 (498)
T ss_pred CcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEE
Confidence 222332211 11123332 4456665555 99999999999999999999999999884 677778888866666
Q ss_pred eecCC
Q 011953 458 ATNPK 462 (474)
Q Consensus 458 atNp~ 462 (474)
+ |+.
T Consensus 154 T-N~L 157 (498)
T PRK13531 154 S-NEL 157 (498)
T ss_pred C-CCC
Confidence 5 873
No 31
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.52 E-value=8e-15 Score=131.24 Aligned_cols=113 Identities=20% Similarity=0.307 Sum_probs=82.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
+.+|||+|++||||+.+|++||+.+++ +++.+.+......+....+.+. +......|.+..|++|+|||||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeecc
Confidence 378999999999999999999998764 7777776654322111101110 1223456999999999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
|+.|+++.|..|+++|+++.+. +.|.....+.++++|+|||.
T Consensus 102 I~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVLEEGKFT--RLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp GGGS-HHHHHHHHHHHHHSEEE--CCTSSSEEE--EEEEEEESS
T ss_pred hhhhHHHHHHHHHHHHhhchhc--cccccccccccceEEeecCc
Confidence 9999999999999999999876 45555566778999999986
No 32
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4e-15 Score=150.69 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=92.2
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
-+.+|.|.+..-..+...+..-..........++++.++||+||||||||+||+++|..++.+++........+|.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence 45577777776554443332210111112234567788999999999999999999999999999875544444443321
Q ss_pred EeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEE-----EEEcCeeEeeCCCeEEEEeecCCCCCC
Q 011953 392 VKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTIS-----VAKAGLVTTLSTRTIIFGATNPKGHYD 466 (474)
Q Consensus 392 ~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~-----i~~~g~~~~~~~~~~viaatNp~~~~d 466 (474)
.+...+.+ .......++|+||||||.+.+... .-..-||++.+. +..-+...+....+.||||||+|..+|
T Consensus 268 EkkiRelF---~~A~~~aPcivFiDeIDAI~pkRe-~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 268 EKKIRELF---DQAKSNAPCIVFIDEIDAITPKRE-EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred HHHHHHHH---HHHhccCCeEEEeecccccccchh-hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 11101110 111234689999999999977432 233444443221 111111222345699999999988888
Q ss_pred CCC
Q 011953 467 PNL 469 (474)
Q Consensus 467 ~~~ 469 (474)
|+.
T Consensus 344 paL 346 (802)
T KOG0733|consen 344 PAL 346 (802)
T ss_pred HHH
Confidence 763
No 33
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.1e-14 Score=151.12 Aligned_cols=146 Identities=25% Similarity=0.265 Sum_probs=93.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
..+|.|.+.+|..|+..+--+.++....+..+|...+||||||||||||.+|+++|..+.-.+..+. ++.|...++
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK----GPELLNMYV 746 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK----GPELLNMYV 746 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeec----CHHHHHHHh
Confidence 3478899999999998876655544444555666789999999999999999999998887776542 222322222
Q ss_pred eeCCeee-eeccccccCCceEEEEcCCCCCChHh---------HHH-HHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 393 KDGGEWM-LEAGALVLADGGLCCIDEFDSMREHD---------RAT-IHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 393 ~~~~~~~-~~~g~l~~a~~gil~iDEid~~~~~~---------~~~-l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.++.+.. ..-...-.|.++|+|+||+|.+.+.. ... .-+.+.+ .+|+...-...+.||||||+
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAE------LDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAE------LDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHH------hhcccCCCCCceEEEecCCC
Confidence 2210000 00011234678999999999985531 111 1122221 23343333457899999999
Q ss_pred CCCCCCC
Q 011953 462 KGHYDPN 468 (474)
Q Consensus 462 ~~~~d~~ 468 (474)
|.-+|||
T Consensus 821 PDLLDpA 827 (953)
T KOG0736|consen 821 PDLLDPA 827 (953)
T ss_pred ccccChh
Confidence 8888876
No 34
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=9.3e-15 Score=141.08 Aligned_cols=136 Identities=26% Similarity=0.284 Sum_probs=88.0
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
..+|.|+.++|+-|..+++-+..--....+-.|+...|||+||||||||+||+++|..++..+|.+. .+.|+..
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVS----sstltSK-- 284 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVS----SSTLTSK-- 284 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEec----hhhhhhh--
Confidence 4578899998877776665542211111123355677999999999999999999999998888653 2234433
Q ss_pred eeCCeeeeecccccc--------CCceEEEEcCCCCCChH------------hHHHHHHHHHhcEEEEEEcCeeEee--C
Q 011953 393 KDGGEWMLEAGALVL--------ADGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTL--S 450 (474)
Q Consensus 393 ~~~~~~~~~~g~l~~--------a~~gil~iDEid~~~~~------------~~~~l~~~me~~~~~i~~~g~~~~~--~ 450 (474)
|..+...++. ..+.++||||||.+... ..+.|+.-|+ |...++ .
T Consensus 285 -----wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~ 350 (491)
T KOG0738|consen 285 -----WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENS 350 (491)
T ss_pred -----hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccc
Confidence 3333222221 26789999999987321 2333444444 222222 2
Q ss_pred CCeEEEEeecCCCCCCCC
Q 011953 451 TRTIIFGATNPKGHYDPN 468 (474)
Q Consensus 451 ~~~~viaatNp~~~~d~~ 468 (474)
..+.|+||||.||.+|.|
T Consensus 351 k~VmVLAATN~PWdiDEA 368 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEA 368 (491)
T ss_pred eeEEEEeccCCCcchHHH
Confidence 347899999999999875
No 35
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.8e-15 Score=144.47 Aligned_cols=145 Identities=33% Similarity=0.398 Sum_probs=101.3
Q ss_pred cCcccchHHHHHHHHhhhhCCcee--ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH--VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~--~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+|.|.+.+|.++...++-+.+. ....|.-++...+|||+||||||||++|+++|+.++..++.+..+. ++
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~----lt-- 164 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN----LT-- 164 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc----cc--
Confidence 447889999998887666554332 2224556778899999999999999999999999998887664333 22
Q ss_pred EEeeCCeeeeeccccccC--------CceEEEEcCCCCCChHhHHHHHHHHH--hcEEEEEEcCeeEeeCCCeEEEEeec
Q 011953 391 AVKDGGEWMLEAGALVLA--------DGGLCCIDEFDSMREHDRATIHEAME--QQTISVAKAGLVTTLSTRTIIFGATN 460 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l~~a--------~~gil~iDEid~~~~~~~~~l~~~me--~~~~~i~~~g~~~~~~~~~~viaatN 460 (474)
++|+.++..++.| .+.|+||||+|.+....+..-|++|. ...+-..-+|....-+.++.|+||||
T Consensus 165 -----~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 165 -----SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred -----hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 2455554444433 57899999999976544555566553 22222234566666667899999999
Q ss_pred CCCCCCCC
Q 011953 461 PKGHYDPN 468 (474)
Q Consensus 461 p~~~~d~~ 468 (474)
+|..+|.|
T Consensus 240 RP~DlDeA 247 (386)
T KOG0737|consen 240 RPFDLDEA 247 (386)
T ss_pred CCccHHHH
Confidence 99777754
No 36
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=3.7e-14 Score=144.03 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=101.3
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCC----CCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDAS----GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS 382 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~----~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~ 382 (474)
.+.+.+...|+|++.+|+++..++....++.... ........|+||+||||||||++|+++|+.++.+++......
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 3444555569999999999988774321111000 011123478999999999999999999999888777654322
Q ss_pred c-cCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCCh--------------HhHHHHHHHHHhcEEEEEEcCe
Q 011953 383 T-SAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMRE--------------HDRATIHEAMEQQTISVAKAGL 445 (474)
Q Consensus 383 ~-~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~--------------~~~~~l~~~me~~~~~i~~~g~ 445 (474)
. ..+......... .......+.+..+.+||+||||||++.. +.|++|+++||.+.+.+...|.
T Consensus 144 l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg 223 (412)
T PRK05342 144 LTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGG 223 (412)
T ss_pred cccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCC
Confidence 1 111111000000 0000112334567889999999999965 3789999999977666654444
Q ss_pred eEeeCCCeEEEEeecC----CCCCC
Q 011953 446 VTTLSTRTIIFGATNP----KGHYD 466 (474)
Q Consensus 446 ~~~~~~~~~viaatNp----~~~~d 466 (474)
.......+.+|+|+|. .|.|.
T Consensus 224 ~~~~~~~~~~i~t~nilfi~~Gaf~ 248 (412)
T PRK05342 224 RKHPQQEFIQVDTTNILFICGGAFD 248 (412)
T ss_pred cCcCCCCeEEeccCCceeeeccccc
Confidence 3333457899999998 26664
No 37
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.9e-14 Score=131.70 Aligned_cols=139 Identities=29% Similarity=0.329 Sum_probs=88.5
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
..+|.|.+.+|+|+..+++-+.+.-...-...++...+||+||||||||-||+++|..++..++.+. .+.|..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS----SSDLvS--- 204 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS----SSDLVS--- 204 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee----hHHHHH---
Confidence 4578999999999998887665432211122234456999999999999999999999987666542 222332
Q ss_pred eeCCeeeeecccccc--------CCceEEEEcCCCCCChH--------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 393 KDGGEWMLEAGALVL--------ADGGLCCIDEFDSMREH--------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 393 ~~~~~~~~~~g~l~~--------a~~gil~iDEid~~~~~--------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
.|..+...|+. ..+.|+||||||.+... .+..-.+++-| ..|. -.-+..+.|+
T Consensus 205 ----KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ------MqGV-G~d~~gvLVL 273 (439)
T KOG0739|consen 205 ----KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ------MQGV-GNDNDGVLVL 273 (439)
T ss_pred ----HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh------hhcc-ccCCCceEEE
Confidence 23333333322 36789999999987332 22222333322 1111 1123457999
Q ss_pred EeecCCCCCCCCC
Q 011953 457 GATNPKGHYDPNL 469 (474)
Q Consensus 457 aatNp~~~~d~~~ 469 (474)
+|||.||.+|.|.
T Consensus 274 gATNiPw~LDsAI 286 (439)
T KOG0739|consen 274 GATNIPWVLDSAI 286 (439)
T ss_pred ecCCCchhHHHHH
Confidence 9999999988653
No 38
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-13 Score=138.77 Aligned_cols=139 Identities=17% Similarity=0.249 Sum_probs=108.7
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCc
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGL 387 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l 387 (474)
.....++|....-..+...+-.- -..+.+||+.|++||||..+||+||+.+++ +++.++++.....+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 46678888777655554333210 123588999999999999999999999986 88888877765544
Q ss_pred eEEEEeeC------CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 388 TVTAVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 388 ~~~~~~~~------~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
..+-+.+. |....+.|.+..|+||+||||||..|+.+.|..|+.+++++.+. +.|...+.+.+++||||||.
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~--rvG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFE--RVGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeE--ecCCCcccceeeEEEeecCc
Confidence 33322221 33345578899999999999999999999999999999999987 78888888999999999997
No 39
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=5.2e-13 Score=128.74 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=82.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc--CCceEEEE----------------e--eCCeeeeecccccc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--AGLTVTAV----------------K--DGGEWMLEAGALVL 407 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~--~~l~~~~~----------------~--~~~~~~~~~g~l~~ 407 (474)
.++||.||||||||++|+++|+..+.+++...+.... ..+..... + ......+..|++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 6799999999999999999999888877765443321 11111100 0 00112234666664
Q ss_pred --CCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEc---CeeEeeCCCeEEEEeecCC
Q 011953 408 --ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKA---GLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 408 --a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~---g~~~~~~~~~~viaatNp~ 462 (474)
+.+++++|||+++++++.++.|+++|+++.+.+... +.....+.++++|+|+||.
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 478899999999999999999999999998876432 2334466789999999985
No 40
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.42 E-value=4e-13 Score=141.76 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=109.6
Q ss_pred hHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc--eEEEeCCCcccCCceEEEE----
Q 011953 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLGSTSAGLTVTAV---- 392 (474)
Q Consensus 319 ~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~--~~~~~~~~~~~~~l~~~~~---- 392 (474)
++++|.|+++..+.+. .+ -+|||-|++|||||++++.++.++|. ++.....+.+...|.....
T Consensus 8 ~~~~~~Al~l~av~p~--------~~---gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPA--------GL---GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcc--------cc---ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 7899999999888741 11 34999999999999999999999876 6666655555544433221
Q ss_pred eeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 393 KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 393 ~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
-..|.....+|.+.+|++||||+||++.+++..++.|+++|+.|.+++.+.|...+++++|.+||+.|+.
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~ 146 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA 146 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh
Confidence 1114445889999999999999999999999999999999999999999999999999999999997753
No 41
>PHA02244 ATPase-like protein
Probab=99.42 E-value=9e-13 Score=129.66 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=83.0
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeecccccc--CCceEEEEcCCCCCChH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL--ADGGLCCIDEFDSMREH 424 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~--a~~gil~iDEid~~~~~ 424 (474)
+.++||.||||||||++|+++|+..+.+++..........+... ....+. +..|++.. +++|+|+|||++.++++
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~-i~~~g~--~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGF-IDANGK--FHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccc-cccccc--ccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 37799999999999999999999999888776532211112111 111133 34455543 57899999999999999
Q ss_pred hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 425 ~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.+..|+.+++++.+. ..+.....+.++++|||+|+.
T Consensus 196 vq~~L~~lLd~r~l~--l~g~~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 196 ALIIINSAIANKFFD--FADERVTAHEDFRVISAGNTL 231 (383)
T ss_pred HHHHHHHHhccCeEE--ecCcEEecCCCEEEEEeeCCC
Confidence 999999999988665 456666667799999999996
No 42
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.6e-13 Score=139.13 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=90.0
Q ss_pred CcccchHHHHHHHHhhhhCCceeecC-CCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDA-SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~-~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
.+|.|++.++..+..+++.+.++-.. ....++.+.+|||+||||||||.||+++|..++..++.+- ++.|...++
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK----GPELlNkYV 586 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK----GPELLNKYV 586 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec----CHHHHHHHh
Confidence 36789999999999999998765221 1223455788999999999999999999999998887642 222333222
Q ss_pred eeCCeeeeecccccc---CCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 393 KDGGEWMLEAGALVL---ADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 393 ~~~~~~~~~~g~l~~---a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
.++.. .. ...+.. ..++|+|+||+|.|.+. ..+.|+.-|+ |... ...+.||||
T Consensus 587 GESEr-AV-R~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~--R~gV~viaA 653 (802)
T KOG0733|consen 587 GESER-AV-RQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELD---------GLEE--RRGVYVIAA 653 (802)
T ss_pred hhHHH-HH-HHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhc---------cccc--ccceEEEee
Confidence 22100 00 001111 36799999999998442 2333444443 2211 234789999
Q ss_pred ecCCCCCCCC
Q 011953 459 TNPKGHYDPN 468 (474)
Q Consensus 459 tNp~~~~d~~ 468 (474)
||+|...|||
T Consensus 654 TNRPDiIDpA 663 (802)
T KOG0733|consen 654 TNRPDIIDPA 663 (802)
T ss_pred cCCCcccchh
Confidence 9998888876
No 43
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.41 E-value=2.8e-13 Score=136.81 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=98.1
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecC---C---CCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDA---S---GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~---~---~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..+.+.+...|+|++.+|+++..++....++... . .....+..|+||+||||||||++|+++|+..+.++....
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 3455566677999999999999887421111000 0 001122468999999999999999999998877665443
Q ss_pred CCc-ccCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCCh--------------HhHHHHHHHHHhcEEE-EE
Q 011953 380 LGS-TSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMRE--------------HDRATIHEAMEQQTIS-VA 441 (474)
Q Consensus 380 ~~~-~~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~--------------~~~~~l~~~me~~~~~-i~ 441 (474)
... +..++........ ......++.+..+.+||+||||+|++.+ +.|++|+++|| |.+. +.
T Consensus 149 a~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~ 227 (413)
T TIGR00382 149 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVP 227 (413)
T ss_pred hhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecc
Confidence 221 1111111000000 0000113345567889999999999976 58999999997 5443 33
Q ss_pred EcCeeEeeCCCeEEEEeecC----CCCCC
Q 011953 442 KAGLVTTLSTRTIIFGATNP----KGHYD 466 (474)
Q Consensus 442 ~~g~~~~~~~~~~viaatNp----~~~~d 466 (474)
..|....-..++.+|.|+|. -|.|+
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~ 256 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFV 256 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeeccccc
Confidence 33332222346899999998 26664
No 44
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.40 E-value=2e-12 Score=136.41 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=96.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC----------ceEEEeCCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTGLGS 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~----------~~~~~~~~~~ 382 (474)
+.+++|++...+++..++.++ .+.|+||+||||||||++|+++++.+. .+++...+..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 337999999998888777653 136899999999999999999987531 2344443321
Q ss_pred c---cCCce----EEE----Ee------eCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCe
Q 011953 383 T---SAGLT----VTA----VK------DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGL 445 (474)
Q Consensus 383 ~---~~~l~----~~~----~~------~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~ 445 (474)
. ..++. ... .. ..+.....+|.+..+++|+|||||++.|++..|+.|+.+||++.+.+..+..
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 0 00111 000 00 0011223567888899999999999999999999999999998776531110
Q ss_pred ---------------eEeeCCCeEEEEeecC-CCCCCCC
Q 011953 446 ---------------VTTLSTRTIIFGATNP-KGHYDPN 468 (474)
Q Consensus 446 ---------------~~~~~~~~~viaatNp-~~~~d~~ 468 (474)
....++++++|+|||. +..++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~pa 250 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPA 250 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChH
Confidence 1235677888887754 5666654
No 45
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=136.51 Aligned_cols=144 Identities=23% Similarity=0.268 Sum_probs=85.4
Q ss_pred hhcccCcccchHHHHHHHHh---hhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccC
Q 011953 309 LRGICPQVFGLFTVKLAVAL---TLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~ai~~---~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~ 385 (474)
.+--+.++.|-+.+|..+.. -|-.+. ++..-|+++ +.+|||+||||||||+|||++|..++.++|... .+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~-kftrLGGKL--PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s----GS 371 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPT-KFTRLGGKL--PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS----GS 371 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcH-HhhhccCcC--CCceEEeCCCCCchhHHHHHhhcccCCCeEecc----cc
Confidence 34447788899999876643 333332 222233332 367999999999999999999999999888642 11
Q ss_pred CceEEEEeeCCeeeeeccccc----cCCceEEEEcCCCCCChH----h----HHHHHHHHHhcEEEEEEcCeeEeeCCCe
Q 011953 386 GLTVTAVKDGGEWMLEAGALV----LADGGLCCIDEFDSMREH----D----RATIHEAMEQQTISVAKAGLVTTLSTRT 453 (474)
Q Consensus 386 ~l~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEid~~~~~----~----~~~l~~~me~~~~~i~~~g~~~~~~~~~ 453 (474)
.+....+.-+. -+...|. ...++|+||||||.+... + ...|++.+.+ .+|- +.+..+
T Consensus 372 EFdEm~VGvGA---rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvE------mDGF--~qNeGi 440 (752)
T KOG0734|consen 372 EFDEMFVGVGA---RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVE------MDGF--KQNEGI 440 (752)
T ss_pred chhhhhhcccH---HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHH------hcCc--CcCCce
Confidence 11111111110 0001111 125799999999987332 1 2334444432 2221 234568
Q ss_pred EEEEeecCCCCCCCCCC
Q 011953 454 IIFGATNPKGHYDPNLC 470 (474)
Q Consensus 454 ~viaatNp~~~~d~~~~ 470 (474)
+||||||.|..+|+|.+
T Consensus 441 IvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALT 457 (752)
T ss_pred EEEeccCChhhhhHHhc
Confidence 99999998666666543
No 46
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.39 E-value=8.6e-14 Score=127.83 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=87.1
Q ss_pred hhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCce
Q 011953 309 LRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~ 388 (474)
.+-...+|+||+.+|+..-+-+--- ..+..-..|. +.|||++||||||||++|+++|..+..+++.+.. +.|.
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yL--enPe~Fg~WA-PknVLFyGppGTGKTm~Akalane~kvp~l~vka----t~li 188 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYL--ENPERFGDWA-PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKA----TELI 188 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHh--hChHHhcccC-cceeEEECCCCccHHHHHHHHhcccCCceEEech----HHHH
Confidence 4446678999999998654433110 0010011222 4899999999999999999999999988886532 2233
Q ss_pred EEEEeeCCeeeee-ccccccCCceEEEEcCCCCCChHh------------HHHHHHHHHhcEEEEEEcCeeEeeCCCeEE
Q 011953 389 VTAVKDGGEWMLE-AGALVLADGGLCCIDEFDSMREHD------------RATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (474)
Q Consensus 389 ~~~~~~~~~~~~~-~g~l~~a~~gil~iDEid~~~~~~------------~~~l~~~me~~~~~i~~~g~~~~~~~~~~v 455 (474)
+..+.++....-+ ......+.++|+||||+|.+.-+. -++|+.-|+ |+. -+..+..
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------gi~--eneGVvt 257 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------GIK--ENEGVVT 257 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCceEE
Confidence 3223222110000 111234578999999999874331 233443333 222 2345789
Q ss_pred EEeecCCCCCCCCC
Q 011953 456 FGATNPKGHYDPNL 469 (474)
Q Consensus 456 iaatNp~~~~d~~~ 469 (474)
|||||.+..+|||.
T Consensus 258 IaaTN~p~~LD~ai 271 (368)
T COG1223 258 IAATNRPELLDPAI 271 (368)
T ss_pred EeecCChhhcCHHH
Confidence 99999999999863
No 47
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-13 Score=142.12 Aligned_cols=142 Identities=19% Similarity=0.229 Sum_probs=89.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
-+.+|.|+|.+|+.+..++..+.+... -.+..+.++.+|||+||||||||++||++|..+...++.+. .+.|...
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk----gpEL~sk 507 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK----GPELFSK 507 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc----CHHHHHH
Confidence 355788999999999887776644311 11223455678999999999999999999999998887642 2223333
Q ss_pred EEeeCCeeeeec-cccccCCceEEEEcCCCCCChHh-----------HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 391 AVKDGGEWMLEA-GALVLADGGLCCIDEFDSMREHD-----------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 391 ~~~~~~~~~~~~-g~l~~a~~gil~iDEid~~~~~~-----------~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
++.++....... ...-.+.+.|+|+||||.+..+. .+.|+.-|+ |... ..++.||||
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~--~k~V~ViAA 576 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEA--LKNVLVIAA 576 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------cccc--cCcEEEEec
Confidence 232210000000 00112356999999999874432 223333333 3222 246899999
Q ss_pred ecCCCCCCCC
Q 011953 459 TNPKGHYDPN 468 (474)
Q Consensus 459 tNp~~~~d~~ 468 (474)
||+|..+|+|
T Consensus 577 TNRpd~ID~A 586 (693)
T KOG0730|consen 577 TNRPDMIDPA 586 (693)
T ss_pred cCChhhcCHH
Confidence 9998877775
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.4e-12 Score=121.70 Aligned_cols=131 Identities=22% Similarity=0.305 Sum_probs=92.1
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
...+.+|++.+|+-+.+.+-+...+ -..--|+||+||||.|||+||..||+..+..+..+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts------------ 84 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS------------ 84 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc------------
Confidence 3446789999999888777653111 112368999999999999999999999887665431
Q ss_pred EeeCCeeeeeccccc-----cCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcC----eeEeeC-CCeEEEEeecC
Q 011953 392 VKDGGEWMLEAGALV-----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG----LVTTLS-TRTIIFGATNP 461 (474)
Q Consensus 392 ~~~~~~~~~~~g~l~-----~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g----~~~~~~-~~~~viaatNp 461 (474)
|....++|.+. +..+.|+|||||+++++..-+.|..+||+-.+-+.-+. ....++ +.|.+|+||.+
T Consensus 85 ----Gp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 85 ----GPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ----cccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 11122333322 23567999999999999999999999998776543221 122222 35899999987
Q ss_pred CCCC
Q 011953 462 KGHY 465 (474)
Q Consensus 462 ~~~~ 465 (474)
.|.+
T Consensus 161 ~G~l 164 (332)
T COG2255 161 AGML 164 (332)
T ss_pred cccc
Confidence 6655
No 49
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-13 Score=122.88 Aligned_cols=142 Identities=23% Similarity=0.313 Sum_probs=84.3
Q ss_pred cccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEe
Q 011953 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~ 393 (474)
+|.|.+.-...+..+++-+..+ ..-....++++.++|++||||||||.+||+.|......+.-. .++.|...+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL----AgPQLVQMfIG 247 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL----AGPQLVQMFIG 247 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh----cchHHHhhhhc
Confidence 4555554444444444333222 112234577889999999999999999999997655433321 11122222222
Q ss_pred eCCeeeeeccccccC-CceEEEEcCCCCCC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 394 DGGEWMLEAGALVLA-DGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 394 ~~~~~~~~~g~l~~a-~~gil~iDEid~~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
++...+-.+.++... .+.|+||||+|.+. .+.|..+++.+.+ .+|. +.+.++-||||||+
T Consensus 248 dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ------LDGF--ss~~~vKviAATNR 319 (424)
T KOG0652|consen 248 DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ------LDGF--SSDDRVKVIAATNR 319 (424)
T ss_pred chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh------hcCC--CCccceEEEeeccc
Confidence 322222223333322 57899999999862 3467778888775 2332 23457889999998
Q ss_pred CCCCCCC
Q 011953 462 KGHYDPN 468 (474)
Q Consensus 462 ~~~~d~~ 468 (474)
..-+|||
T Consensus 320 vDiLDPA 326 (424)
T KOG0652|consen 320 VDILDPA 326 (424)
T ss_pred ccccCHH
Confidence 7777775
No 50
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.34 E-value=1.1e-12 Score=130.66 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=105.2
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc----eEEEeCCCc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGS 382 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~----~~~~~~~~~ 382 (474)
.+.++...+++|...--+.+..++.. +.+. ..|||++|++||||+.+|+.||..+.+ +++..+|..
T Consensus 71 ~~~~~~~~~LIG~~~~~~~~~eqik~----~ap~------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 71 YLKSEALDDLIGESPSLQELREQIKA----YAPS------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred hccchhhhhhhccCHHHHHHHHHHHh----hCCC------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 34566777788866654444444433 2223 367999999999999999999977654 677776655
Q ss_pred ccCCceEEEEee----C--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 383 TSAGLTVTAVKD----G--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 383 ~~~~l~~~~~~~----~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
....+..+.+.+ . |....++|.+..|++|+||+|||..|++..|..|+.+|++|.+. +.|.....+.++++|
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~--rvG~~~~~~~dVRli 218 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYR--RVGGSQPRPVDVRLI 218 (403)
T ss_pred hCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceE--ecCCCCCcCCCceee
Confidence 443322211111 1 33445689999999999999999999999999999999999987 666677788899999
Q ss_pred EeecC
Q 011953 457 GATNP 461 (474)
Q Consensus 457 aatNp 461 (474)
+|||-
T Consensus 219 ~AT~~ 223 (403)
T COG1221 219 CATTE 223 (403)
T ss_pred ecccc
Confidence 99975
No 51
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.1e-13 Score=127.61 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=110.0
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCC---CCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDAS---GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS 382 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~---~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~ 382 (474)
..+...+..-++|++.+|+.+..++.+--++.... ..---+..||||+||+|+|||.||+.+|+++..++-....
T Consensus 53 ~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA-- 130 (408)
T COG1219 53 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA-- 130 (408)
T ss_pred HHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc--
Confidence 56777888889999999999998887654332111 1111234899999999999999999999999988865432
Q ss_pred ccCCceEEEEeeCCe--ee-----eeccccccCCceEEEEcCCCCCCh--------------HhHHHHHHHHHhcEEEEE
Q 011953 383 TSAGLTVTAVKDGGE--WM-----LEAGALVLADGGLCCIDEFDSMRE--------------HDRATIHEAMEQQTISVA 441 (474)
Q Consensus 383 ~~~~l~~~~~~~~~~--~~-----~~~g~l~~a~~gil~iDEid~~~~--------------~~~~~l~~~me~~~~~i~ 441 (474)
..||.+...+... .. .--....+|..||++|||||++.. ..|.+|+..+|.-..++.
T Consensus 131 --TtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVP 208 (408)
T COG1219 131 --TTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVP 208 (408)
T ss_pred --cchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccC
Confidence 2244332221110 00 001223457899999999999732 368999999998777887
Q ss_pred EcCeeEeeCCCeEEEEeecC---C-CCCC
Q 011953 442 KAGLVTTLSTRTIIFGATNP---K-GHYD 466 (474)
Q Consensus 442 ~~g~~~~~~~~~~viaatNp---~-~~~d 466 (474)
..|....-+..+.-+-|+|- + |.|+
T Consensus 209 PqGGRKHP~Qe~iqvDT~NILFIcgGAF~ 237 (408)
T COG1219 209 PQGGRKHPQQEFIQVDTSNILFICGGAFA 237 (408)
T ss_pred CCCCCCCCccceEEEcccceeEEeccccc
Confidence 77776666667888889987 3 6665
No 52
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.30 E-value=4.3e-12 Score=126.07 Aligned_cols=113 Identities=22% Similarity=0.278 Sum_probs=85.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
+.+|||.|++||||+.+|++||..+. .+++.+.+......+......+. +......|.+..|++|+|||||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 47799999999999999999998876 36777766543322211111110 1112346778899999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
|+.|+.+.|..|+.+++++.+. +.|.....+.++++|+|||.
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcEE--ecCCCceeccceEEEEechh
Confidence 9999999999999999998765 55666667788999999986
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.28 E-value=1.6e-12 Score=126.86 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=71.0
Q ss_pred CcccchHHHH--HHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 314 PQVFGLFTVK--LAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 314 p~i~G~~~~K--~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
.+++||+.+- ..++.-++.. | .-.+++|+||||||||+||+.|+...+..+.......+.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~-------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g------- 85 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA-------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG------- 85 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc-------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc-------
Confidence 3688888863 2333333221 1 125699999999999999999999998877765322211
Q ss_pred EeeCCeeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEE
Q 011953 392 VKDGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTIS 439 (474)
Q Consensus 392 ~~~~~~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~ 439 (474)
+++-.....++... ....+-|||||||++++...|.+|+..||+|++.
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii 134 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII 134 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE
Confidence 11111111111111 1124569999999999999999999999998874
No 54
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.1e-12 Score=119.99 Aligned_cols=114 Identities=24% Similarity=0.305 Sum_probs=71.4
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeecccccc-CCceEEEEcCCCCC-
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL-ADGGLCCIDEFDSM- 421 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~-a~~gil~iDEid~~- 421 (474)
+.++.++||+||||||||+|++++|+....+++.+.- +.+...++.++....-....+.. ..+.|+||||+|.+
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvg----sefvqkylgegprmvrdvfrlakenapsiifideidaia 261 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG----SEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIA 261 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc----HHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHh
Confidence 4456779999999999999999999887766665421 11111122221111111111222 25689999999975
Q ss_pred ----------ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 422 ----------REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 422 ----------~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
..+.|..|.+.+.+ .+|.. ...++-||.|||+...+|||.
T Consensus 262 tkrfdaqtgadrevqril~ellnq------mdgfd--q~~nvkvimatnradtldpal 311 (408)
T KOG0727|consen 262 TKRFDAQTGADREVQRILIELLNQ------MDGFD--QTTNVKVIMATNRADTLDPAL 311 (408)
T ss_pred hhhccccccccHHHHHHHHHHHHh------ccCcC--cccceEEEEecCcccccCHhh
Confidence 33467778887765 23322 234578999999877777753
No 55
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.24 E-value=1.3e-11 Score=129.30 Aligned_cols=138 Identities=18% Similarity=0.257 Sum_probs=97.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHh--------cC---ceEEEeCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL--------SN---RSVITTGL 380 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~--------~~---~~~~~~~~ 380 (474)
-+.+++|....-+.+...+..- .+.+.+|||.|++||||+++|++|+.. ++ .+++...+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inC 286 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 286 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeec
Confidence 4556888776544444333110 112477999999999999999999987 43 46777776
Q ss_pred CcccCCceEEEEeeC--Cee-----eeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCe
Q 011953 381 GSTSAGLTVTAVKDG--GEW-----MLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (474)
Q Consensus 381 ~~~~~~l~~~~~~~~--~~~-----~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~ 453 (474)
......+..+.+.+. |.+ ...+|.+..|++|+||||||+.|+...|..|+.+++++.+. +.|.....+.++
T Consensus 287 aal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~--r~G~~~~~~~dv 364 (538)
T PRK15424 287 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT--RVGGHQPVPVDV 364 (538)
T ss_pred ccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE--ecCCCceeccce
Confidence 654322211111110 111 13467788999999999999999999999999999998876 566666778889
Q ss_pred EEEEeecC
Q 011953 454 IIFGATNP 461 (474)
Q Consensus 454 ~viaatNp 461 (474)
++|+|||.
T Consensus 365 RiIaat~~ 372 (538)
T PRK15424 365 RVISATHC 372 (538)
T ss_pred EEEEecCC
Confidence 99999986
No 56
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.23 E-value=5.1e-12 Score=113.46 Aligned_cols=112 Identities=22% Similarity=0.312 Sum_probs=73.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc----eEEEeCCCcccCCceEEEEeeCCeee-eeccccccCCceEEEEcCCCCC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDGGEWM-LEAGALVLADGGLCCIDEFDSM 421 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEid~~ 421 (474)
..++||+||+|||||.+|+++++.... ++....+.....+-...... .... ..++..-.+..||+||||||++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~--~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSV--SKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHC--HHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhh--hhhhhcccceeeccchhhhhhHHHhhc
Confidence 467999999999999999999998772 55444332221100000000 0000 1112223345689999999999
Q ss_pred Ch-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 422 RE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 422 ~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.+ ..|+.|+++||.+.++. ..|..... .++.+|+|+|--
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d-~~g~~vd~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTD-SYGRTVDT-SNIIFIMTSNFG 130 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEE-TTCCEEEG-TTEEEEEEESSS
T ss_pred cccccccchhhHHHHHHHHHHHhcccceec-ccceEEEe-CCceEEEecccc
Confidence 99 99999999999999883 33433333 368999999963
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.22 E-value=2.2e-11 Score=132.40 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=96.9
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCC
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAG 386 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~ 386 (474)
.+.+.+...|+||+.+++.+..++....... ..+-++..++||+||||||||.+|+++|+..+.+++...+......
T Consensus 451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~ 527 (758)
T PRK11034 451 NLGDRLKMLVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_pred HHHHHhcceEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccc
Confidence 4667888899999999998887775320000 0111233469999999999999999999998877665543321110
Q ss_pred ceEEEEeeC-Ceee--eeccccc----cCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 387 LTVTAVKDG-GEWM--LEAGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 387 l~~~~~~~~-~~~~--~~~g~l~----~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
...+...+. ..+. ...|.+. ....+|++||||+++.++.++.|+++|++|.++.. .|..... .++.+|+||
T Consensus 528 ~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~iiI~Ts 605 (758)
T PRK11034 528 HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF-RNVVLVMTT 605 (758)
T ss_pred ccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-CCcEEEEeC
Confidence 000001110 0011 1122222 23568999999999999999999999999998732 3332222 357899999
Q ss_pred cC
Q 011953 460 NP 461 (474)
Q Consensus 460 Np 461 (474)
|.
T Consensus 606 N~ 607 (758)
T PRK11034 606 NA 607 (758)
T ss_pred Cc
Confidence 94
No 58
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-11 Score=127.17 Aligned_cols=146 Identities=21% Similarity=0.301 Sum_probs=95.5
Q ss_pred hcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 310 ~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
.-+..+-||++++|+.|+..+.-|.-+.. .+| .-++|+||||+|||++++.||+.++|.++....+ |++-
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs-----~qG-kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvG----G~tD 476 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGS-----VQG-KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVG----GMTD 476 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhccc-----CCC-cEEEEeCCCCCCcccHHHHHHHHhCCceEEEecc----cccc
Confidence 35677899999999999987765411111 122 3489999999999999999999999988875433 2322
Q ss_pred -EEEeeCCeee--eeccccccC------CceEEEEcCCCCCCh----HhHHHHHHHHH-hcEEEEEEcCeeEeeC-CCeE
Q 011953 390 -TAVKDGGEWM--LEAGALVLA------DGGLCCIDEFDSMRE----HDRATIHEAME-QQTISVAKAGLVTTLS-TRTI 454 (474)
Q Consensus 390 -~~~~~~~~~~--~~~g~l~~a------~~gil~iDEid~~~~----~~~~~l~~~me-~~~~~i~~~g~~~~~~-~~~~ 454 (474)
+-++++...+ ..||.++.+ .+.+++|||+|++.. +--++|+++|+ +|.-++...-....+. .++.
T Consensus 477 vAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred HHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 2233333222 336766653 667999999999854 23578999997 3332221111111111 3689
Q ss_pred EEEeecCCCCC
Q 011953 455 IFGATNPKGHY 465 (474)
Q Consensus 455 viaatNp~~~~ 465 (474)
+|||+|....+
T Consensus 557 FicTAN~idtI 567 (906)
T KOG2004|consen 557 FICTANVIDTI 567 (906)
T ss_pred EEEeccccccC
Confidence 99999975443
No 59
>CHL00181 cbbX CbbX; Provisional
Probab=99.19 E-value=9.2e-12 Score=121.26 Aligned_cols=136 Identities=21% Similarity=0.189 Sum_probs=81.6
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhC--CceeecCCCCc-eeccccceecCCCCcchhHHHHHHHHhcCc-------eE
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIG--GVQHVDASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SV 375 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~--g~~~~~~~~~~-~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-------~~ 375 (474)
..+...+.++++|++.+|+.+...... -.......|.. .++..|+||+||||||||++|+++++.+.. ++
T Consensus 15 ~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~ 94 (287)
T CHL00181 15 QEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHL 94 (287)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCce
Confidence 567888999999999999977432210 00001111221 223478999999999999999999986421 12
Q ss_pred EEeCCCcccCCceEEEEeeCCeee-eeccccccCCceEEEEcCCCCC---------ChHhHHHHHHHHHhcEEEEEEcCe
Q 011953 376 ITTGLGSTSAGLTVTAVKDGGEWM-LEAGALVLADGGLCCIDEFDSM---------REHDRATIHEAMEQQTISVAKAGL 445 (474)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEid~~---------~~~~~~~l~~~me~~~~~i~~~g~ 445 (474)
+.+.. ..+..... |... ...+.+..+.+|||||||++.+ ..+.+..|...|+++.
T Consensus 95 ~~v~~----~~l~~~~~---g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------- 159 (287)
T CHL00181 95 LTVTR----DDLVGQYI---GHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------- 159 (287)
T ss_pred EEecH----HHHHHHHh---ccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC--------
Confidence 22110 01111111 1000 0123445578899999999986 4556778888898632
Q ss_pred eEeeCCCeEEEEeecC
Q 011953 446 VTTLSTRTIIFGATNP 461 (474)
Q Consensus 446 ~~~~~~~~~viaatNp 461 (474)
.+++||+|+++
T Consensus 160 -----~~~~vI~ag~~ 170 (287)
T CHL00181 160 -----DDLVVIFAGYK 170 (287)
T ss_pred -----CCEEEEEeCCc
Confidence 24567777763
No 60
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.18 E-value=4.1e-11 Score=119.13 Aligned_cols=113 Identities=21% Similarity=0.281 Sum_probs=83.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
+.+|||+|++||||+.+|++|+..++ .+++.+.+......+......+. +......|.+..+++|+|||||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 47799999999999999999998876 36777766554222111111110 1111236778889999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
++.++...|..|..+++.+.+. ..|.....+.++++|+|+|.
T Consensus 109 i~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCch
Confidence 9999999999999999988765 44555566778999999986
No 61
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.18 E-value=3.3e-11 Score=126.24 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=97.4
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCc
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGL 387 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l 387 (474)
.-+.+++|....-+.+...+-.- .+.+.+|||.|++||||+++|++||..++ .+++...+......+
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 33456888776544444333110 12247899999999999999999998765 377777766543222
Q ss_pred eEEEEeeC--Cee-----eeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeec
Q 011953 388 TVTAVKDG--GEW-----MLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (474)
Q Consensus 388 ~~~~~~~~--~~~-----~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatN 460 (474)
..+.+.+. |.+ ...+|.+..|++|+||||||+.|+...|..|+.+++++.+. +.|.....+.++++|+|||
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~--r~g~~~~~~~dvRiIaat~ 356 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVV--RVGGTEPVPVDVRVVAATH 356 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEE--ecCCCceeeecceEEeccC
Confidence 11111110 111 12467778899999999999999999999999999998875 5565566677889999998
Q ss_pred CC
Q 011953 461 PK 462 (474)
Q Consensus 461 p~ 462 (474)
..
T Consensus 357 ~~ 358 (526)
T TIGR02329 357 CA 358 (526)
T ss_pred CC
Confidence 63
No 62
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-11 Score=127.66 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=95.4
Q ss_pred hhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCce
Q 011953 309 LRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~ 388 (474)
..-+..+-||++.+|+.|+.-|.-+.... .++| .-++|+||||+|||+|++.||+..++.++....++.. .
T Consensus 318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~~-----~~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvr---D 388 (782)
T COG0466 318 EKILDKDHYGLEKVKERILEYLAVQKLTK-----KLKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVR---D 388 (782)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHhc-----cCCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccc---c
Confidence 44677789999999999987775432111 1122 3389999999999999999999999988876544421 1
Q ss_pred EEEEeeCCeee--eeccccccC------CceEEEEcCCCCCChHh----HHHHHHHHH-hcEEEEEEcCeeEeeC-CCeE
Q 011953 389 VTAVKDGGEWM--LEAGALVLA------DGGLCCIDEFDSMREHD----RATIHEAME-QQTISVAKAGLVTTLS-TRTI 454 (474)
Q Consensus 389 ~~~~~~~~~~~--~~~g~l~~a------~~gil~iDEid~~~~~~----~~~l~~~me-~~~~~i~~~g~~~~~~-~~~~ 454 (474)
.+-.+++.+.+ ..||.+..+ .+.+++|||||+|+.+. -++|+++++ +|.-++........+. .++.
T Consensus 389 EAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 389 EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred HHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 11123332222 236666543 56799999999996643 568999997 3333322222222221 3589
Q ss_pred EEEeecCCC
Q 011953 455 IFGATNPKG 463 (474)
Q Consensus 455 viaatNp~~ 463 (474)
+|||+|...
T Consensus 469 FiaTANsl~ 477 (782)
T COG0466 469 FIATANSLD 477 (782)
T ss_pred EEeecCccc
Confidence 999999743
No 63
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.1e-12 Score=117.01 Aligned_cols=133 Identities=23% Similarity=0.289 Sum_probs=80.0
Q ss_pred HHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeee
Q 011953 322 VKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLE 401 (474)
Q Consensus 322 ~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 401 (474)
+|+++.+-|..+ .....+.++++.+|+|+|+||||||.||+++|+.....+..+ ..+.|...++.++....-.
T Consensus 197 iKEsvELPLthP---E~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv----vGseLiQkylGdGpklvRq 269 (440)
T KOG0726|consen 197 IKESVELPLTHP---EYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV----VGSELIQKYLGDGPKLVRE 269 (440)
T ss_pred HHHhhcCCCCCH---HHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh----hhHHHHHHHhccchHHHHH
Confidence 455665555443 111234466778899999999999999999997665444322 1222333333332111100
Q ss_pred cccc-ccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 402 AGAL-VLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 402 ~g~l-~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
...+ -...+.|+||||||.+.. +.|..+++.+.+ .+|... ..++-||.|||....+|||.
T Consensus 270 lF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ------ldGFds--rgDvKvimATnrie~LDPaL 341 (440)
T KOG0726|consen 270 LFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDGFDS--RGDVKVIMATNRIETLDPAL 341 (440)
T ss_pred HHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh------ccCccc--cCCeEEEEecccccccCHhh
Confidence 0000 013578999999998732 356677777765 233222 34688999999888888764
No 64
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.15 E-value=2e-11 Score=126.53 Aligned_cols=137 Identities=19% Similarity=0.106 Sum_probs=79.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
+.+|.|++.+|+.+......-.......| ++.+.++||+||||||||++|+++|...+.+++....+...+ ...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~g--l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~----~~v 300 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYG--LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG----GIV 300 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc----ccc
Confidence 45789999999877642211000001112 234577999999999999999999999998888764332111 111
Q ss_pred eeCCeeeeecc-ccccCCceEEEEcCCCCCChH------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 393 KDGGEWMLEAG-ALVLADGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 393 ~~~~~~~~~~g-~l~~a~~gil~iDEid~~~~~------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
.+........- ......++|+||||||++... ....++..|++ ....+.|||||
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~-------------~~~~V~vIaTT 367 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE-------------KKSPVFVVATA 367 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc-------------CCCceEEEEec
Confidence 11000000000 011236789999999986321 11223444432 12357899999
Q ss_pred cCCCCCCCC
Q 011953 460 NPKGHYDPN 468 (474)
Q Consensus 460 Np~~~~d~~ 468 (474)
|.++.+||+
T Consensus 368 N~~~~Ld~a 376 (489)
T CHL00195 368 NNIDLLPLE 376 (489)
T ss_pred CChhhCCHH
Confidence 987767665
No 65
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.5e-11 Score=128.54 Aligned_cols=141 Identities=23% Similarity=0.259 Sum_probs=84.2
Q ss_pred cccCcccchHHHHHHHHhhh--hCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCce
Q 011953 311 GICPQVFGLFTVKLAVALTL--IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l--~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~ 388 (474)
.-+.++.|.+.+|..|..-+ +...+.+...|.+ -+.++||+||||||||.||+++|..++.+++.+.-.. +.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAK--iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSE----Fv 381 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAK--IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSE----FV 381 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCc--CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHH----HH
Confidence 34668999999999886544 2333334444433 3577999999999999999999999999998753211 11
Q ss_pred EEEEeeCCeeeeecccccc---CCceEEEEcCCCCCChHh------------HHHHHHHHHhcEEEEEEcCeeEeeCCCe
Q 011953 389 VTAVKDGGEWMLEAGALVL---ADGGLCCIDEFDSMREHD------------RATIHEAMEQQTISVAKAGLVTTLSTRT 453 (474)
Q Consensus 389 ~~~~~~~~~~~~~~g~l~~---a~~gil~iDEid~~~~~~------------~~~l~~~me~~~~~i~~~g~~~~~~~~~ 453 (474)
.... +.+ .......+.. ..++|+||||||.+.... -..|.+.+-+ .+|... ...+
T Consensus 382 E~~~-g~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e------mDgf~~--~~~v 451 (774)
T KOG0731|consen 382 EMFV-GVG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE------MDGFET--SKGV 451 (774)
T ss_pred HHhc-ccc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHH------hcCCcC--CCcE
Confidence 1000 000 0000111122 257899999999874322 1234443321 233322 2468
Q ss_pred EEEEeecCCCCCCC
Q 011953 454 IIFGATNPKGHYDP 467 (474)
Q Consensus 454 ~viaatNp~~~~d~ 467 (474)
+++||||+++-+|+
T Consensus 452 i~~a~tnr~d~ld~ 465 (774)
T KOG0731|consen 452 IVLAATNRPDILDP 465 (774)
T ss_pred EEEeccCCccccCH
Confidence 99999997544444
No 66
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8e-11 Score=125.69 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=98.9
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST 383 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~ 383 (474)
.+-+.+...|+||+.+-.++..++-... ..-+.+-|+--..||.||+|+|||.||+++|..+. .+++...++.-
T Consensus 484 ~le~~L~~rViGQd~AV~avs~aIrraR---aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy 560 (786)
T COG0542 484 NLERRLKKRVIGQDEAVEAVSDAIRRAR---AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY 560 (786)
T ss_pred HHHHHHhcceeChHHHHHHHHHHHHHHh---cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH
Confidence 4567899999999999888887764321 11112233334689999999999999999998765 45555443322
Q ss_pred cCCceEEEEeeC--C-eeeeeccccccC---C-ceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 384 SAGLTVTAVKDG--G-EWMLEAGALVLA---D-GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 384 ~~~l~~~~~~~~--~-~~~~~~g~l~~a---~-~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
...-+.+.+.+. | ..+.+.|.|..+ + -.|+++|||++..++..+.|+++|++|.++-.. |...... ++.||
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~-Gr~VdFr-NtiII 638 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQ-GRTVDFR-NTIII 638 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCC-CCEEecc-eeEEE
Confidence 211111111111 1 111234555443 3 479999999999999999999999999998432 3333333 57999
Q ss_pred EeecC
Q 011953 457 GATNP 461 (474)
Q Consensus 457 aatNp 461 (474)
.|+|-
T Consensus 639 mTSN~ 643 (786)
T COG0542 639 MTSNA 643 (786)
T ss_pred Eeccc
Confidence 99996
No 67
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.14 E-value=1.1e-11 Score=121.12 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=70.8
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC----Ceeeeeccccc--cCCceEEEEcC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG----GEWMLEAGALV--LADGGLCCIDE 417 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~g~l~--~a~~gil~iDE 417 (474)
++.+..++|+||||||||++|+++++.++..++.+.... |......++ .+.+..+.... ...++||||||
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~e----L~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE----LESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH----hhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 355677999999999999999999999998777653322 222111111 00111111111 23578999999
Q ss_pred CCCCChHh---------H---HHHHHHHHhcEEEEEEcCee--EeeCCCeEEEEeecCCCCCCCCC
Q 011953 418 FDSMREHD---------R---ATIHEAMEQQTISVAKAGLV--TTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 418 id~~~~~~---------~---~~l~~~me~~~~~i~~~g~~--~~~~~~~~viaatNp~~~~d~~~ 469 (474)
||.+.+.. | ..|+..|+. -..+...|.+ .....++.||+|||.++.+||+.
T Consensus 221 IDA~~g~r~~~~~tv~~qiV~~tLLnl~D~-p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 221 LDAGAGRFGTTQYTVNNQMVNGTLMNIADN-PTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHhcC-CccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 99874321 1 223344432 1111122321 12345789999999988888764
No 68
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.14 E-value=5.9e-11 Score=128.92 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=94.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCce
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLT 388 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~ 388 (474)
-+++++|....-+.+...+..- .+.+.+|||.|++||||+.+|++|++.+. .+++.+.+......+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~ 392 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEAL 392 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHH
Confidence 3566777665444333332211 12246799999999999999999999876 4677776655432211
Q ss_pred EEEEee---CCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 389 VTAVKD---GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 389 ~~~~~~---~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.+...+ +......+|.+..|++|+||||||+.|+.+.|..|+.+++++.+. +.|.....+.++++|+|||.
T Consensus 393 ~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 393 AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceEEeeEEEEEeccC
Confidence 110110 011123456777899999999999999999999999999988775 45555566678899999986
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.14 E-value=9.7e-11 Score=128.59 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=97.3
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccC
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~ 385 (474)
..+...+...|+||+.+++++..++....... ..+-++..++||+||||||||.+|+++|+.++..++.........
T Consensus 446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~---~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 446 KNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGL---GNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred HHHHHHHhcceeCcHHHHHHHHHHHHHHhcCC---CCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 35677889999999999998887765421000 011122345899999999999999999999887666544322111
Q ss_pred CceEEEEeeC--Cee-eeecccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 386 GLTVTAVKDG--GEW-MLEAGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 386 ~l~~~~~~~~--~~~-~~~~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
..+.+...+. |.. ....|.+ .....+|++|||++++.++.++.|+++|++|.++. ..|....+. ++++|+|
T Consensus 523 ~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d-~~g~~vd~~-~~iii~T 600 (731)
T TIGR02639 523 KHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTD-NNGRKADFR-NVILIMT 600 (731)
T ss_pred cccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeec-CCCcccCCC-CCEEEEC
Confidence 0000000000 100 0111222 23356899999999999999999999999998863 233333222 5789999
Q ss_pred ecCC
Q 011953 459 TNPK 462 (474)
Q Consensus 459 tNp~ 462 (474)
+|.-
T Consensus 601 sn~g 604 (731)
T TIGR02639 601 SNAG 604 (731)
T ss_pred CCcc
Confidence 9973
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.12 E-value=9.8e-11 Score=128.24 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=89.0
Q ss_pred hhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCce
Q 011953 309 LRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~ 388 (474)
.+-+..++||++.+|+.|+..+....... ..++ ..++|+||||+|||++++.+++..++.++....++....
T Consensus 317 ~~~l~~~~~g~~~vK~~i~~~l~~~~~~~-----~~~g-~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~-- 388 (784)
T PRK10787 317 QEILDTDHYGLERVKDRILEYLAVQSRVN-----KIKG-PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE-- 388 (784)
T ss_pred HHHhhhhccCHHHHHHHHHHHHHHHHhcc-----cCCC-ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCH--
Confidence 34566779999999999985544211100 1122 359999999999999999999999887766543332111
Q ss_pred EEEEeeCCeee--eeccccc------cCCceEEEEcCCCCCChHh----HHHHHHHHHh-cEEEEEEcCeeEeeC-CCeE
Q 011953 389 VTAVKDGGEWM--LEAGALV------LADGGLCCIDEFDSMREHD----RATIHEAMEQ-QTISVAKAGLVTTLS-TRTI 454 (474)
Q Consensus 389 ~~~~~~~~~~~--~~~g~l~------~a~~gil~iDEid~~~~~~----~~~l~~~me~-~~~~i~~~g~~~~~~-~~~~ 454 (474)
+...+..... ..+|.+. ...+.|++|||+|+++++. .++|+++|+. +...+...-...... .++.
T Consensus 389 -~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 389 -AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred -HHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 0011110000 1233332 1245699999999998765 4899999984 333332221211111 3678
Q ss_pred EEEeecCC
Q 011953 455 IFGATNPK 462 (474)
Q Consensus 455 viaatNp~ 462 (474)
+|||+|..
T Consensus 468 ~i~TaN~~ 475 (784)
T PRK10787 468 FVATSNSM 475 (784)
T ss_pred EEEcCCCC
Confidence 99999974
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.12 E-value=1.2e-10 Score=116.31 Aligned_cols=136 Identities=24% Similarity=0.307 Sum_probs=86.3
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
-+.+++|++.+++.+...+...... + .+..|+||+||||||||++|+++++..+..+....... +.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~----~---~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~----~~--- 88 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR----G---EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA----LE--- 88 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc----C---CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc----cc---
Confidence 4557899999999887666431000 1 12357999999999999999999998876544321110 00
Q ss_pred EeeCCeeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcC-e-----eEeeCCCeEEEEeecCCCC
Q 011953 392 VKDGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG-L-----VTTLSTRTIIFGATNPKGH 464 (474)
Q Consensus 392 ~~~~~~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g-~-----~~~~~~~~~viaatNp~~~ 464 (474)
..+. + .+.+ ....++++||||++.++...++.+..+|++..+.+.... . ...+ .++.+|+|||+.+.
T Consensus 89 --~~~~--l-~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l-~~~~li~at~~~~~ 162 (328)
T PRK00080 89 --KPGD--L-AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL-PPFTLIGATTRAGL 162 (328)
T ss_pred --ChHH--H-HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC-CCceEEeecCCccc
Confidence 0000 0 0111 124578999999999998888889999997655432111 1 1112 34788999998665
Q ss_pred CCC
Q 011953 465 YDP 467 (474)
Q Consensus 465 ~d~ 467 (474)
+++
T Consensus 163 l~~ 165 (328)
T PRK00080 163 LTS 165 (328)
T ss_pred CCH
Confidence 544
No 72
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.11 E-value=1.3e-10 Score=128.32 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=90.4
Q ss_pred hhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc--C
Q 011953 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--A 385 (474)
Q Consensus 308 l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~--~ 385 (474)
+.+.+..+++|++.+|+.+...+...... + ..++ .++||+||||||||++|+++++..+..++....+... .
T Consensus 314 ~~~~l~~~~~G~~~~k~~i~~~~~~~~~~----~-~~~~-~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~ 387 (775)
T TIGR00763 314 AKEILDEDHYGLKKVKERILEYLAVQKLR----G-KMKG-PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEA 387 (775)
T ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhh----c-CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHH
Confidence 35577888999999999988654421100 0 1122 3699999999999999999999998877765432211 0
Q ss_pred CceEEEEeeCCeee-eecccc----c--cCCceEEEEcCCCCCChHh----HHHHHHHHHh---cEEEEEEcCeeEeeCC
Q 011953 386 GLTVTAVKDGGEWM-LEAGAL----V--LADGGLCCIDEFDSMREHD----RATIHEAMEQ---QTISVAKAGLVTTLST 451 (474)
Q Consensus 386 ~l~~~~~~~~~~~~-~~~g~l----~--~a~~gil~iDEid~~~~~~----~~~l~~~me~---~~~~i~~~g~~~~~~~ 451 (474)
.+.... ..+. ..+|.+ . .....|++|||||++.++. .++|++.|+. +.+.-...+....+ .
T Consensus 388 ~i~g~~----~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s 462 (775)
T TIGR00763 388 EIRGHR----RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-S 462 (775)
T ss_pred HHcCCC----CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-C
Confidence 011000 0010 011211 1 2244699999999997643 3788998874 22221111111111 3
Q ss_pred CeEEEEeecCCCCCCCC
Q 011953 452 RTIIFGATNPKGHYDPN 468 (474)
Q Consensus 452 ~~~viaatNp~~~~d~~ 468 (474)
++.+|+|||+...++++
T Consensus 463 ~v~~I~TtN~~~~i~~~ 479 (775)
T TIGR00763 463 KVIFIATANSIDTIPRP 479 (775)
T ss_pred CEEEEEecCCchhCCHH
Confidence 67899999998777654
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.11 E-value=3.9e-11 Score=116.89 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=79.7
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhC--CceeecCCCCc-eeccccceecCCCCcchhHHHHHHHHhcCc-------eE
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIG--GVQHVDASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SV 375 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~--g~~~~~~~~~~-~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-------~~ 375 (474)
+.+.+.+..+++|++.+|+.+...... ..+.....|.. ..+..|+||+||||||||++|+++++.... ++
T Consensus 14 ~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~ 93 (284)
T TIGR02880 14 TEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHL 93 (284)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceE
Confidence 345555666789999999987432211 10111112221 123468999999999999999888866421 23
Q ss_pred EEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCC---------ChHhHHHHHHHHHhcEEEEEEcCee
Q 011953 376 ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM---------REHDRATIHEAMEQQTISVAKAGLV 446 (474)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~---------~~~~~~~l~~~me~~~~~i~~~g~~ 446 (474)
+.... ..+......... ....+.+..+.+|+|||||++.+ ..+.+..|++.|+++.
T Consensus 94 v~v~~----~~l~~~~~g~~~--~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~--------- 158 (284)
T TIGR02880 94 VSVTR----DDLVGQYIGHTA--PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR--------- 158 (284)
T ss_pred EEecH----HHHhHhhcccch--HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC---------
Confidence 32221 111111111100 01123455678899999999977 3445778889998532
Q ss_pred EeeCCCeEEEEeecC
Q 011953 447 TTLSTRTIIFGATNP 461 (474)
Q Consensus 447 ~~~~~~~~viaatNp 461 (474)
.++++|+|+++
T Consensus 159 ----~~~~vI~a~~~ 169 (284)
T TIGR02880 159 ----DDLVVILAGYK 169 (284)
T ss_pred ----CCEEEEEeCCc
Confidence 35678888764
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.6e-12 Score=124.37 Aligned_cols=146 Identities=26% Similarity=0.268 Sum_probs=90.8
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
-..-+|.|.+++|.++...++-+.-+.. -.|.+ .....+||.||||||||+|+++||..+...++... ++.|+.
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS----assLts 224 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS----ASSLTS 224 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeecc----HHHhhh
Confidence 3456889999999998877766532211 11111 12346999999999999999999999998887653 333554
Q ss_pred EEEeeCCeeeeec-cccc-cCCceEEEEcCCCCCChH--------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 390 TAVKDGGEWMLEA-GALV-LADGGLCCIDEFDSMREH--------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 390 ~~~~~~~~~~~~~-g~l~-~a~~gil~iDEid~~~~~--------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
.+..++ +....+ -.+. ...++|+||||+|++-.. .+....+++-+ ..+....-+.++.|||||
T Consensus 225 K~~Ge~-eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 225 KYVGES-EKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred hccChH-HHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEecC
Confidence 444332 100000 0111 125789999999986222 12223333322 334444445589999999
Q ss_pred cCCCCCCCC
Q 011953 460 NPKGHYDPN 468 (474)
Q Consensus 460 Np~~~~d~~ 468 (474)
|.|+..|.+
T Consensus 298 N~P~e~Dea 306 (428)
T KOG0740|consen 298 NRPWELDEA 306 (428)
T ss_pred CCchHHHHH
Confidence 999988865
No 75
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.11 E-value=1.3e-10 Score=122.64 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=95.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTV 389 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~ 389 (474)
...++|+....+.+...+-.- ...+.+|||+|++||||+.+|++|+..++ .+++.+.+......+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 346788776665555444321 12247899999999999999999999876 36666665543221111
Q ss_pred EEEeeC------CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 390 TAVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 390 ~~~~~~------~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+...+. +......|.+..|++|++|||||+.++.+.|..|+.+++++.+. +.|.....+.++++|+|||.
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQ--RVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred HHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEe--eCCCCcceecceEEEEecCC
Confidence 111110 11112456778899999999999999999999999999988764 45555566778999999987
No 76
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.2e-11 Score=123.02 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=91.4
Q ss_pred CcccchHHHHHHHHhhhhCCceeecC--CCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDA--SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~--~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
.+|.|+..+|+++...+..+.+ |+. ...++|-..+|||+||||||||.||-+++..++..++.+- ++.|...+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~k-yp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK----GPElL~Ky 741 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSK-YPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK----GPELLSKY 741 (952)
T ss_pred eecccHHHHHHHHHHHHhcccc-chHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec----CHHHHHHH
Confidence 3788999999999988877644 322 2346777889999999999999999999999988777652 12222222
Q ss_pred EeeCCeee-eeccccccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGEWM-LEAGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~~~-~~~g~l~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
...+.+.. .--.....|.++|+|+||||.+.+. .-+.|+.-|+. .. .+ ..+.|+|||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG---------~E-gl-~GV~i~aaT 810 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG---------AE-GL-DGVYILAAT 810 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc---------cc-cc-ceEEEEEec
Confidence 21110000 0011123468999999999998553 23334444432 11 12 246899999
Q ss_pred cCCCCCCCCC
Q 011953 460 NPKGHYDPNL 469 (474)
Q Consensus 460 Np~~~~d~~~ 469 (474)
.+|..+|||.
T Consensus 811 sRpdliDpAL 820 (952)
T KOG0735|consen 811 SRPDLIDPAL 820 (952)
T ss_pred CCccccCHhh
Confidence 9888888864
No 77
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.10 E-value=1.3e-10 Score=123.69 Aligned_cols=138 Identities=24% Similarity=0.257 Sum_probs=94.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCce
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLT 388 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~ 388 (474)
....++|....-+.+...+-.- .+.+.+|||.|++||||+++|++||..+. .+++.+.+......+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHH
Confidence 3457788776555554433221 12247799999999999999999999865 3677766654322211
Q ss_pred EEEEeeC------CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 389 VTAVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 389 ~~~~~~~------~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.....+. +......|.+..+++|++||||++.++.+.|..|+++++.+.+. +.|.....+.++++|+|||.
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCC
Confidence 1111110 11112456677899999999999999999999999999988765 44444556677899999986
No 78
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.10 E-value=2.9e-11 Score=123.07 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=78.5
Q ss_pred CcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
.+|.|.+..++.+...+..+... .......+..+.++||+||||||||++|+++|+.++..++...... +.....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~----l~~~~~ 206 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE----LVQKFI 206 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH----HhHhhc
Confidence 35677777666665544321111 0000112344578999999999999999999998887766543211 111111
Q ss_pred eeCCeeeeeccccc---cCCceEEEEcCCCCCC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 393 KDGGEWMLEAGALV---LADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 393 ~~~~~~~~~~g~l~---~a~~gil~iDEid~~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
.. +.... ...+. ...++|+||||+|.+. .+.+..+.+.+..- .+. .-..++.||||
T Consensus 207 g~-~~~~i-~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l------d~~--~~~~~v~VI~a 276 (389)
T PRK03992 207 GE-GARLV-RELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM------DGF--DPRGNVKIIAA 276 (389)
T ss_pred cc-hHHHH-HHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc------ccc--CCCCCEEEEEe
Confidence 11 00000 01111 2356899999999973 33445566655431 111 11235789999
Q ss_pred ecCCCCCCCC
Q 011953 459 TNPKGHYDPN 468 (474)
Q Consensus 459 tNp~~~~d~~ 468 (474)
||.++.+|++
T Consensus 277 Tn~~~~ld~a 286 (389)
T PRK03992 277 TNRIDILDPA 286 (389)
T ss_pred cCChhhCCHH
Confidence 9987666665
No 79
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.7e-10 Score=114.04 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=84.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
+.+++|++.+++.+...+..... .-....|++|+||||||||++|+++++..+..+........ .
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~----~---- 67 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL----E---- 67 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchh----c----
Confidence 35789999999987766643100 00113579999999999999999999987755443211100 0
Q ss_pred eeCCeeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEE-cC----eeEeeCCCeEEEEeecCCCCCC
Q 011953 393 KDGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAK-AG----LVTTLSTRTIIFGATNPKGHYD 466 (474)
Q Consensus 393 ~~~~~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~-~g----~~~~~~~~~~viaatNp~~~~d 466 (474)
..+.. .+.+ ....++++||||++.++++.+..|+.+|++....+.. .+ ........+.++++||.++.++
T Consensus 68 -~~~~l---~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 68 -KPGDL---AAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT 143 (305)
T ss_pred -CchhH---HHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccC
Confidence 00000 0111 1235679999999999999999999999876543211 11 1111122478888888765555
Q ss_pred C
Q 011953 467 P 467 (474)
Q Consensus 467 ~ 467 (474)
+
T Consensus 144 ~ 144 (305)
T TIGR00635 144 S 144 (305)
T ss_pred H
Confidence 4
No 80
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.10 E-value=2.1e-10 Score=125.44 Aligned_cols=138 Identities=21% Similarity=0.286 Sum_probs=95.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTV 389 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~ 389 (474)
+.+++|.....+.+..++..- ...+.+|||+|+||||||++|++|+..+. .+++...+.....++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~ 444 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 444 (686)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhh
Confidence 346888877766665444321 12246899999999999999999998765 35666555543222211
Q ss_pred EEEeeC------CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 390 TAVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 390 ~~~~~~------~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
....+. +......|.+..+++|++|||||+.++.+.|..|+.+++++.+. +.|.....+.++++|+|||..
T Consensus 445 ~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 445 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE--RLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred hhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEE--eCCCCCcccceEEEEEeCCCC
Confidence 111110 11123356677889999999999999999999999999988765 445545556788999999873
No 81
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.8e-11 Score=111.75 Aligned_cols=114 Identities=24% Similarity=0.304 Sum_probs=72.9
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccC-CceEEEEcCCCCCC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLA-DGGLCCIDEFDSMR 422 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a-~~gil~iDEid~~~ 422 (474)
+.++.++||+||||||||.+||++|+-....++.+- .+.|...++.++....-+.-.+... ..+|+|+||||.+.
T Consensus 208 idppkgvllygppgtgktl~aravanrtdacfirvi----gselvqkyvgegarmvrelf~martkkaciiffdeidaig 283 (435)
T KOG0729|consen 208 IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI----GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIG 283 (435)
T ss_pred CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeeh----hHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeecccccc
Confidence 344577999999999999999999998887776542 1223322222221111111122222 34799999999863
Q ss_pred -----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 423 -----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 423 -----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
.+.|..+++.+.+ .+|.. ...+.-|+.|||+|..+|||.
T Consensus 284 garfddg~ggdnevqrtmleli~q------ldgfd--prgnikvlmatnrpdtldpal 333 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQ------LDGFD--PRGNIKVLMATNRPDTLDPAL 333 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHh------ccCCC--CCCCeEEEeecCCCCCcCHhh
Confidence 3467778888765 22321 123467999999999898864
No 82
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.09 E-value=2.5e-10 Score=121.94 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=54.8
Q ss_pred eeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCe--------eEeeCCCeEEEEeecCC--CCCCC
Q 011953 400 LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGL--------VTTLSTRTIIFGATNPK--GHYDP 467 (474)
Q Consensus 400 ~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~--------~~~~~~~~~viaatNp~--~~~d~ 467 (474)
.++|.+..|++|+|||||++.+++..|..|+++|+++.+.+..... ....+.++++|+++|+. ..+||
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~ 285 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHP 285 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCH
Confidence 4688999999999999999999999999999999999987633211 22356789999999985 45554
No 83
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.08 E-value=5.1e-11 Score=120.87 Aligned_cols=144 Identities=20% Similarity=0.192 Sum_probs=80.4
Q ss_pred cCcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++..|+.+...+..+... .......+..+.++||+||||||||++|+++++..+..++...... +....
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~----l~~k~ 219 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE----FVQKY 219 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH----HHHHh
Confidence 346788888877766554322111 0001112344578999999999999999999998887766542111 11111
Q ss_pred EeeCCeeeeecc-ccccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGEWMLEAG-ALVLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~~~~~~g-~l~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
...........- ......++|+||||+|.+.. ..+..+.+.+..- .+. ....++.||+||
T Consensus 220 ~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l------d~~--~~~~~v~VI~aT 291 (398)
T PTZ00454 220 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMAT 291 (398)
T ss_pred cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh------hcc--CCCCCEEEEEec
Confidence 101000000000 01123578999999998632 2334455554420 111 112357899999
Q ss_pred cCCCCCCCC
Q 011953 460 NPKGHYDPN 468 (474)
Q Consensus 460 Np~~~~d~~ 468 (474)
|.++.+||+
T Consensus 292 N~~d~LDpA 300 (398)
T PTZ00454 292 NRADTLDPA 300 (398)
T ss_pred CCchhCCHH
Confidence 998888886
No 84
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.5e-11 Score=125.33 Aligned_cols=146 Identities=22% Similarity=0.236 Sum_probs=85.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecC-CCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDA-SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~-~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
-.-++.|++.+|..+...+-........ .+..++...++||+||||||||+||++++..++..++..... .+...
T Consensus 240 ~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk 315 (494)
T COG0464 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSK 315 (494)
T ss_pred ceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcc
Confidence 3446778888888777666554322111 111245556899999999999999999999998888775433 23322
Q ss_pred EEeeCCeeeeeccccc-cCCceEEEEcCCCCCChHh--------HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 391 AVKDGGEWMLEAGALV-LADGGLCCIDEFDSMREHD--------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~~~~--------~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.+.+........-... ...++|+||||+|++.+.. ...+.+.+-. ..|.. -..++.||||||+
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~------~d~~e--~~~~v~vi~aTN~ 387 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE------LDGIE--KAEGVLVIAATNR 387 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH------hcCCC--ccCceEEEecCCC
Confidence 2222110000000111 2457999999999973321 1233333321 01111 1224789999999
Q ss_pred CCCCCCCC
Q 011953 462 KGHYDPNL 469 (474)
Q Consensus 462 ~~~~d~~~ 469 (474)
++..|++.
T Consensus 388 p~~ld~a~ 395 (494)
T COG0464 388 PDDLDPAL 395 (494)
T ss_pred ccccCHhh
Confidence 98888764
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.06 E-value=3.9e-10 Score=120.94 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=79.1
Q ss_pred hcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC----------ceEEEeC
Q 011953 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTG 379 (474)
Q Consensus 310 ~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~----------~~~~~~~ 379 (474)
..-+++++|++...+++...+..+ ...+++|+||||||||++|+.+++... .+++...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 345668999999888877665442 125799999999999999999987652 2233332
Q ss_pred CCcccC-------CceEEEEe-----------eCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEE
Q 011953 380 LGSTSA-------GLTVTAVK-----------DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA 441 (474)
Q Consensus 380 ~~~~~~-------~l~~~~~~-----------~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~ 441 (474)
...... .+...... ..+......|.+..+++|++||||++.|+...|..|+.+|+++.+.+.
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~ 297 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS 297 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee
Confidence 211100 00000000 001111234556677899999999999999999999999999887653
No 86
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.06 E-value=1.7e-10 Score=110.82 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=89.0
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMR 422 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~ 422 (474)
+.++|+.|++||||..+|++.+..+++ ++...++.+.......+-..+. ..-....|.+..|++|.+|+|||..|+
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmS 306 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMS 306 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcC
Confidence 367999999999999999999999886 6777666554322211111111 112345688899999999999999999
Q ss_pred hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 423 EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 423 ~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+..|..|+.++.+|++. +.|.......+++||+||..
T Consensus 307 p~lQaKLLRFL~DGtFR--RVGee~Ev~vdVRVIcatq~ 343 (511)
T COG3283 307 PRLQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQV 343 (511)
T ss_pred HHHHHHHHHHhcCCcee--ecCCcceEEEEEEEEecccc
Confidence 99999999999999987 78888888889999999964
No 87
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.05 E-value=1e-10 Score=128.67 Aligned_cols=142 Identities=22% Similarity=0.222 Sum_probs=83.9
Q ss_pred cCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
..+|.|++.+|+.+...+..+.... ......++.+.++||+||||||||++|+++|..++.+++...... +....
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~----l~~~~ 527 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPE----ILSKW 527 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH----Hhhcc
Confidence 3468899999998877665432210 001122344577999999999999999999999988777643211 11111
Q ss_pred EeeCCeeeeec-cccccCCceEEEEcCCCCCChH------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 392 VKDGGEWMLEA-GALVLADGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 392 ~~~~~~~~~~~-g~l~~a~~gil~iDEid~~~~~------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
..+.....-.. .......++|+||||+|.+.+. ..+.|+..|+. . ....++.||||
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~vI~a 596 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVVVIAA 596 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEEEEEe
Confidence 11100000000 0011245789999999987321 12223333432 1 11346899999
Q ss_pred ecCCCCCCCCC
Q 011953 459 TNPKGHYDPNL 469 (474)
Q Consensus 459 tNp~~~~d~~~ 469 (474)
||.++.+||+.
T Consensus 597 Tn~~~~ld~al 607 (733)
T TIGR01243 597 TNRPDILDPAL 607 (733)
T ss_pred CCChhhCCHhh
Confidence 99988888765
No 88
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.04 E-value=2.3e-10 Score=120.72 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=80.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
+.+|||+|++||||+++|+++|..+.+ +++...+......+..+.+.+. +......|.+..|++|++||||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence 367999999999999999999987653 5666665543221111001100 1011235667789999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
|+.|++..|..|+.+++++.+. +.|.....+.++++|+||+.
T Consensus 307 I~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 307 IGEMSPRMQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred hhhCCHHHHHHHHHHHhcCCcc--cCCCCcceeeeeEEEEecCC
Confidence 9999999999999999988764 44555555667899999975
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.04 E-value=8.1e-10 Score=122.39 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=96.5
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST 383 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~ 383 (474)
.+.+.+...|+|++.+.+++..++....... ..+-++...+||+||||||||.+|+++++.+. ..++.......
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~ 635 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTARAGL---EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEF 635 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHh
Confidence 4567899999999999998887775320000 00112222489999999999999999998762 33443332211
Q ss_pred cCCceEEEEeeC-Ceee--eecccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 384 SAGLTVTAVKDG-GEWM--LEAGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 384 ~~~l~~~~~~~~-~~~~--~~~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
...-+.+...+. ..+. ...|.+ .....+|++||||+++.++.++.|+++|++|.++. ..|....+. ++++|
T Consensus 636 ~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d-~~Gr~vd~~-n~iiI 713 (852)
T TIGR03345 636 QEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMED-GEGREIDFK-NTVIL 713 (852)
T ss_pred hhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeec-CCCcEEecc-ccEEE
Confidence 111111111111 1111 122333 23356899999999999999999999999999874 345555544 58999
Q ss_pred EeecCC
Q 011953 457 GATNPK 462 (474)
Q Consensus 457 aatNp~ 462 (474)
.|||-.
T Consensus 714 ~TSNlg 719 (852)
T TIGR03345 714 LTSNAG 719 (852)
T ss_pred EeCCCc
Confidence 999974
No 90
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.3e-11 Score=107.76 Aligned_cols=111 Identities=25% Similarity=0.362 Sum_probs=72.2
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccC---CceEEEEcCCCC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLA---DGGLCCIDEFDS 420 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEid~ 420 (474)
+..+.++||+||||||||.||+++++...-.++.+. .+.|...+..++... ....++.| .+.|+|.||||.
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~firvs----gselvqk~igegsrm--vrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS----GSELVQKYIGEGSRM--VRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEec----hHHHHHHHhhhhHHH--HHHHHHHHHhcCCceEeeecccc
Confidence 344577999999999999999999988776666542 222333222222111 11222333 578999999998
Q ss_pred CC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCC
Q 011953 421 MR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPN 468 (474)
Q Consensus 421 ~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~ 468 (474)
+. .+.|..+++.+.+ .+|...+ .+.-+|.|||+..-+|||
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnq------ldgfeat--knikvimatnridild~a 302 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQ------LDGFEAT--KNIKVIMATNRIDILDPA 302 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHh------ccccccc--cceEEEEeccccccccHh
Confidence 73 3467888888875 3444433 346799999986666654
No 91
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.03 E-value=2.5e-11 Score=104.01 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=66.2
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccC-CceEEEEcCCCCCChHh---
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLA-DGGLCCIDEFDSMREHD--- 425 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a-~~gil~iDEid~~~~~~--- 425 (474)
|||+||||||||++++.+++.++.+++..................-..+. ...... .++|++|||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~vl~iDe~d~l~~~~~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFF---KKAKKSAKPCVLFIDEIDKLFPKSQPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHH---HHHHHTSTSEEEEEETGGGTSHHCSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccc---ccccccccceeeeeccchhcccccccc
Confidence 68999999999999999999998877765443322110000000000000 011112 36999999999997765
Q ss_pred --------HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCC
Q 011953 426 --------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDP 467 (474)
Q Consensus 426 --------~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~ 467 (474)
.+.|...|+... ....++.+|+|||.++.+++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~ 117 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDP 117 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCH
T ss_pred cccccccccceeeecccccc----------cccccceeEEeeCChhhCCH
Confidence 566777776421 01346899999999776665
No 92
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.02 E-value=1e-09 Score=121.98 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHhhcC-----CCccchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCC
Q 011953 281 DIPDDIIMQFKQFWSEFKD-----TPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGD 355 (474)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~ 355 (474)
.++.+++..+-.-|-..-. +.......+.+.+...|+||+.+.+++..++....... ..+-++...+||+||
T Consensus 471 ~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~lf~Gp 547 (821)
T CHL00095 471 VVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGL---KNPNRPIASFLFSGP 547 (821)
T ss_pred ccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcc---cCCCCCceEEEEECC
Confidence 4666666666555533211 11001124667889999999999999987775321100 011122245899999
Q ss_pred CCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeC--Cee-eeecccc----ccCCceEEEEcCCCCCChHh
Q 011953 356 PGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG--GEW-MLEAGAL----VLADGGLCCIDEFDSMREHD 425 (474)
Q Consensus 356 pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~--~~~-~~~~g~l----~~a~~gil~iDEid~~~~~~ 425 (474)
||||||.+|+++|+... ..++...........+.+...+. |.. ....|.+ .....+|++|||++++.++.
T Consensus 548 ~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v 627 (821)
T CHL00095 548 TGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDI 627 (821)
T ss_pred CCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHH
Confidence 99999999999998752 33333322111100000000000 000 0111222 22344799999999999999
Q ss_pred HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 426 RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 426 ~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
++.|+++|++|.++.. .|..... .++++|.|+|..
T Consensus 628 ~~~Llq~le~g~~~d~-~g~~v~~-~~~i~I~Tsn~g 662 (821)
T CHL00095 628 FNLLLQILDDGRLTDS-KGRTIDF-KNTLIIMTSNLG 662 (821)
T ss_pred HHHHHHHhccCceecC-CCcEEec-CceEEEEeCCcc
Confidence 9999999999998753 3444444 368999999974
No 93
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-10 Score=121.21 Aligned_cols=143 Identities=24% Similarity=0.281 Sum_probs=86.0
Q ss_pred cccCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcc---cC
Q 011953 311 GICPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST---SA 385 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~---~~ 385 (474)
.-+.++.|.+.+|+.+...+- .-..++..-|. +=+.++||+||||||||+||++++..++.+++...-... .+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa--kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGA--KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc--ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 456688899999987765442 11223333343 224779999999999999999999999998886532221 12
Q ss_pred CceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHh----------H-HHHHHHHHhcEEEEEEcCeeEeeCCCeE
Q 011953 386 GLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHD----------R-ATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (474)
Q Consensus 386 ~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~----------~-~~l~~~me~~~~~i~~~g~~~~~~~~~~ 454 (474)
|..++.+++ .+..+ -...++|+||||||...... + ..|.+.+-+ .+|-. -+..+.
T Consensus 225 GvGAsRVRd---LF~qA---kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE------mDGF~--~~~gvi 290 (596)
T COG0465 225 GVGASRVRD---LFEQA---KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE------MDGFG--GNEGVI 290 (596)
T ss_pred CCCcHHHHH---HHHHh---hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh------hccCC--CCCceE
Confidence 222222221 00000 12246899999999874432 1 233333321 12221 234579
Q ss_pred EEEeecCCCCCCCCC
Q 011953 455 IFGATNPKGHYDPNL 469 (474)
Q Consensus 455 viaatNp~~~~d~~~ 469 (474)
++||||++...|||.
T Consensus 291 viaaTNRpdVlD~AL 305 (596)
T COG0465 291 VIAATNRPDVLDPAL 305 (596)
T ss_pred EEecCCCcccchHhh
Confidence 999999987777764
No 94
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.00 E-value=9.9e-11 Score=123.18 Aligned_cols=141 Identities=22% Similarity=0.248 Sum_probs=76.7
Q ss_pred cCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+|.|++.+|+.+...+. .....+...| .+.+.++||+||||||||++|++++..++.+++...........
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g--~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~--- 128 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLG--AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF--- 128 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC--CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH---
Confidence 3467888888876653332 1101111112 23346799999999999999999999988877654321110000
Q ss_pred EEeeCCeeeeecccc---ccCCceEEEEcCCCCCChHh-----------HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 391 AVKDGGEWMLEAGAL---VLADGGLCCIDEFDSMREHD-----------RATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l---~~a~~gil~iDEid~~~~~~-----------~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
... +.... ...+ ....++|+||||+|.+.... ...+.+.+.. ..+. .-...+.||
T Consensus 129 -~g~-~~~~l-~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~------~d~~--~~~~~v~vI 197 (495)
T TIGR01241 129 -VGV-GASRV-RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE------MDGF--GTNTGVIVI 197 (495)
T ss_pred -hcc-cHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhh------hccc--cCCCCeEEE
Confidence 000 00000 0011 12356899999999874321 1122222221 0111 112357899
Q ss_pred EeecCCCCCCCCC
Q 011953 457 GATNPKGHYDPNL 469 (474)
Q Consensus 457 aatNp~~~~d~~~ 469 (474)
||||++..+||+.
T Consensus 198 ~aTn~~~~ld~al 210 (495)
T TIGR01241 198 AATNRPDVLDPAL 210 (495)
T ss_pred EecCChhhcCHHH
Confidence 9999987777753
No 95
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.99 E-value=4.5e-10 Score=108.39 Aligned_cols=115 Identities=24% Similarity=0.287 Sum_probs=64.0
Q ss_pred cccchHHHHHHHHhhhhCC--ceeecCCCCc-eeccccceecCCCCcchhHHHHHHHHhcCc-------eEEEeCCCccc
Q 011953 315 QVFGLFTVKLAVALTLIGG--VQHVDASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SVITTGLGSTS 384 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g--~~~~~~~~~~-~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-------~~~~~~~~~~~ 384 (474)
+++|++.+|+.+....... .......|.. .....|+||+||||||||++|+++++.+.. .++....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4789999998775222110 0011112221 122478999999999999999999976421 1111100
Q ss_pred CCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCC--------hHhHHHHHHHHHh
Q 011953 385 AGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR--------EHDRATIHEAMEQ 435 (474)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~--------~~~~~~l~~~me~ 435 (474)
..+......+.. ....+.+..+.+||+||||++.+. .+.+..|+..|++
T Consensus 83 ~~l~~~~~g~~~--~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~ 139 (261)
T TIGR02881 83 ADLVGEYIGHTA--QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED 139 (261)
T ss_pred HHhhhhhccchH--HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc
Confidence 011111110000 001223445678999999999875 3355677788875
No 96
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.99 E-value=1.7e-09 Score=120.51 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=93.6
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST 383 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~ 383 (474)
.+...+...|+|++.+.+++..++...... -..+-++...+||+||||||||.+|+++|+.+. .+++...+...
T Consensus 558 ~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY 634 (852)
T ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 345678888999999999888777542100 001113335699999999999999999998753 33443332221
Q ss_pred cCCceEEEEeeC-Cee--eeeccccc----cCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 384 SAGLTVTAVKDG-GEW--MLEAGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 384 ~~~l~~~~~~~~-~~~--~~~~g~l~----~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
......+...+. ..+ ....|.+. .....|++||||++++++.++.|+++|++|.++. ..|....+. +++||
T Consensus 635 ~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d-~~g~~vd~r-n~iiI 712 (852)
T TIGR03346 635 MEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTD-GQGRTVDFR-NTVII 712 (852)
T ss_pred cccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceec-CCCeEEecC-CcEEE
Confidence 111111111110 000 01122222 2234699999999999999999999999998873 234334333 57899
Q ss_pred EeecC
Q 011953 457 GATNP 461 (474)
Q Consensus 457 aatNp 461 (474)
+|||.
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 99997
No 97
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.98 E-value=2.4e-10 Score=129.83 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=69.4
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCc----eEEE--------------E-eeC-C---ee---
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGL----TVTA--------------V-KDG-G---EW--- 398 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l----~~~~--------------~-~~~-~---~~--- 398 (474)
+.+.+|||+||||||||.||+++|..++.+++.+....-.... .... . ++- . ++
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 4467899999999999999999999999888876432211100 0000 0 000 0 00
Q ss_pred -----eeeccc------ccc---CCceEEEEcCCCCCChHh-----HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 399 -----MLEAGA------LVL---ADGGLCCIDEFDSMREHD-----RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 399 -----~~~~g~------l~~---a~~gil~iDEid~~~~~~-----~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
....++ +.+ ..++|++|||||.+...+ .+.|+..|+... ...-...+.|||||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeC
Confidence 000111 112 258999999999997543 233444444210 00112357899999
Q ss_pred cCCCCCCCCC
Q 011953 460 NPKGHYDPNL 469 (474)
Q Consensus 460 Np~~~~d~~~ 469 (474)
|+|+.+|||.
T Consensus 1780 NRPD~LDPAL 1789 (2281)
T CHL00206 1780 HIPQKVDPAL 1789 (2281)
T ss_pred CCcccCCHhH
Confidence 9988888874
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.98 E-value=1.8e-10 Score=116.59 Aligned_cols=140 Identities=20% Similarity=0.234 Sum_probs=77.6
Q ss_pred cccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEe
Q 011953 315 QVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~ 393 (474)
+|+|++..++.+...+..+..+. ......+..+.++||+||||||||++|+++++.+...++..... .+......
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~----~l~~~~~g 198 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS----ELVRKYIG 198 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH----HHHHHhhh
Confidence 56777777777765554321110 00011123356799999999999999999999888776554211 11111010
Q ss_pred eCCeeeeeccccc---cCCceEEEEcCCCCCC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 394 DGGEWMLEAGALV---LADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 394 ~~~~~~~~~g~l~---~a~~gil~iDEid~~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
. +.... ...+. ...++|+||||+|.+. ...+..+.+.+..- .+. ....++.||+||
T Consensus 199 ~-~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~vI~tt 268 (364)
T TIGR01242 199 E-GARLV-REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL------DGF--DPRGNVKVIAAT 268 (364)
T ss_pred H-HHHHH-HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh------hCC--CCCCCEEEEEec
Confidence 0 00000 00111 1246799999999873 22344555555430 111 112357899999
Q ss_pred cCCCCCCCC
Q 011953 460 NPKGHYDPN 468 (474)
Q Consensus 460 Np~~~~d~~ 468 (474)
|.++.+|++
T Consensus 269 n~~~~ld~a 277 (364)
T TIGR01242 269 NRPDILDPA 277 (364)
T ss_pred CChhhCChh
Confidence 987666665
No 99
>CHL00176 ftsH cell division protein; Validated
Probab=98.97 E-value=2.2e-10 Score=122.51 Aligned_cols=141 Identities=20% Similarity=0.222 Sum_probs=78.9
Q ss_pred ccCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 312 ICPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
-+.+|.|.+.+|+.+...+. .....+...| .+.+.++||+||||||||++|+++|..++.+++...........
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g--~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~-- 256 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG--AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF-- 256 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh--
Confidence 34578899999877654331 1111111112 23356799999999999999999999988877764322111000
Q ss_pred EEEeeCCeeeeecccc---ccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEE
Q 011953 390 TAVKDGGEWMLEAGAL---VLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (474)
Q Consensus 390 ~~~~~~~~~~~~~g~l---~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~v 455 (474)
... +.... ...+ ....++|+||||+|.+.. ..+..+.+.+.. ..|. .-+.++.|
T Consensus 257 --~g~-~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~------~dg~--~~~~~ViV 324 (638)
T CHL00176 257 --VGV-GAARV-RDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE------MDGF--KGNKGVIV 324 (638)
T ss_pred --hhh-hHHHH-HHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh------hccc--cCCCCeeE
Confidence 000 00000 0011 123567999999998742 223344444432 0111 11346789
Q ss_pred EEeecCCCCCCCC
Q 011953 456 FGATNPKGHYDPN 468 (474)
Q Consensus 456 iaatNp~~~~d~~ 468 (474)
|||||.+..+|++
T Consensus 325 IaaTN~~~~LD~A 337 (638)
T CHL00176 325 IAATNRVDILDAA 337 (638)
T ss_pred EEecCchHhhhhh
Confidence 9999997656654
No 100
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.97 E-value=2.6e-09 Score=105.39 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=50.7
Q ss_pred ccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 402 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 402 ~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.|.+..|++||+-|+|+.+.+.+.+..|+.+++++.+.+. +.....+.+..|||++|+.
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~ 287 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNES 287 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHH
Confidence 4888899999999999999999999999999999998753 3333566777999999996
No 101
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.96 E-value=1.9e-09 Score=114.97 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=54.1
Q ss_pred eeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEc----Ce----eEeeCCCeEEEEeecCC--CCCCC
Q 011953 400 LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKA----GL----VTTLSTRTIIFGATNPK--GHYDP 467 (474)
Q Consensus 400 ~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~----g~----~~~~~~~~~viaatNp~--~~~d~ 467 (474)
.++|.+..|++|+|||||++.+++..|..|+++|+++.+.+... +. ....+.++++|+++|+. ..+||
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp 294 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP 294 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH
Confidence 37899999999999999999999999999999999998875221 00 23456788999999984 44444
No 102
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.96 E-value=7.1e-10 Score=115.02 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
.+|.|++..++.+..++...... .......++.+.++||+||||||||++++++++.+...+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRI 244 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccc
Confidence 35678888777666555322111 000111234457899999999999999999999876543
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=1.3e-09 Score=94.34 Aligned_cols=127 Identities=23% Similarity=0.158 Sum_probs=75.0
Q ss_pred chHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEee
Q 011953 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKD 394 (474)
Q Consensus 318 G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~ 394 (474)
|++.+...+...+... ...+++++||||||||++++.+++.. ...++..................
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 5556666666555441 12579999999999999999999886 44444332221111000000000
Q ss_pred CCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCC
Q 011953 395 GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG 463 (474)
Q Consensus 395 ~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~ 463 (474)
...............++++++||++.+.......+.+.++...... ..+.++.+|+++|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPL 131 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccc
Confidence 0000000112223467899999999998877888888888643221 2245688999999764
No 104
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.92 E-value=1.6e-09 Score=112.80 Aligned_cols=114 Identities=22% Similarity=0.323 Sum_probs=83.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
..++++.|++||||+.+|++++..+++ +++.+.+......+......+. +......|.+..+++|+|||||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 367999999999999999999988763 5666555543222111111110 1112346778889999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
++.++...|..|.++++++.+. +.|.....+.++++|+|||..
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 242 IGDLPLNLQAKLLRFLQERVIE--RLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred hhhCCHHHHHHHHHHHhhCeEE--eCCCCceeeeceEEEEecCCC
Confidence 9999999999999999998765 455555667789999999874
No 105
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.8e-10 Score=109.14 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=79.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeCCCc-ccCCceEEEEeeC-Ceee-eeccccccCCceEEEEcCCCCCC-
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS-TSAGLTVTAVKDG-GEWM-LEAGALVLADGGLCCIDEFDSMR- 422 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~~~~-~~~g~l~~a~~gil~iDEid~~~- 422 (474)
..||||+||+|+|||.||+.+|+....++....+.+ +.+|.....+... .+.. ...+-+..|..||+||||+|++.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 379999999999999999999999999988776543 2222222111000 0000 11233456788999999999985
Q ss_pred -------------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 423 -------------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 423 -------------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
...|.+|+.++|.-.+.+...|.....+.+...|-|+|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnI 357 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNI 357 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccce
Confidence 236889999999877777666665556666777777775
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.90 E-value=3.3e-09 Score=100.45 Aligned_cols=109 Identities=24% Similarity=0.266 Sum_probs=69.8
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc-eEEEeC----CCcccCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTG----LGSTSAGL 387 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-~~~~~~----~~~~~~~l 387 (474)
..++.|++.+..++.-++.++ .-.|+||+||||||||+.|++.++.+.- ..+-.+ +.+...|.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 457889999999998887662 2367999999999999999999976543 222221 11222222
Q ss_pred eEEEEeeC-Ceeeeecccc------ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 388 TVTAVKDG-GEWMLEAGAL------VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 388 ~~~~~~~~-~~~~~~~g~l------~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.. .+.. ..+..-.... ....-.|++|||.|.|..+.|++|...||+
T Consensus 103 sv--vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 103 SV--VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED 155 (346)
T ss_pred cc--hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence 21 1110 0000000000 011226999999999999999999999996
No 107
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-09 Score=107.18 Aligned_cols=137 Identities=24% Similarity=0.266 Sum_probs=87.2
Q ss_pred cccCcccchHHHHHHHHhhhh---CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCc
Q 011953 311 GICPQVFGLFTVKLAVALTLI---GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGL 387 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~---~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l 387 (474)
+-+..++-..++|+.|+.-|. .|..-|..-|-+++ .+-||+||||||||+++.|+|..+...+|.....+
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK--RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~----- 270 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK--RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE----- 270 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh--ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc-----
Confidence 555566667778888876553 23222334444332 56999999999999999999999999888754322
Q ss_pred eEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh---H---------------hHHHHHHHHHhcEEEEEEcCeeEee
Q 011953 388 TVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE---H---------------DRATIHEAMEQQTISVAKAGLVTTL 449 (474)
Q Consensus 388 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~---~---------------~~~~l~~~me~~~~~i~~~g~~~~~ 449 (474)
+++..+ ++--.+...+..|++|.+||..-. . ....|+.++ +|.+.+.
T Consensus 271 ----v~~n~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfi---------DGlwSsc 335 (457)
T KOG0743|consen 271 ----VKLDSD--LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFL---------DGLWSSC 335 (457)
T ss_pred ----ccCcHH--HHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhh---------ccccccC
Confidence 222111 222223345778999999997511 0 112233333 3444444
Q ss_pred CCCeEEEEeecCCCCCCCCC
Q 011953 450 STRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 450 ~~~~~viaatNp~~~~d~~~ 469 (474)
...-+||.|||..+++|||.
T Consensus 336 g~ERIivFTTNh~EkLDPAL 355 (457)
T KOG0743|consen 336 GDERIIVFTTNHKEKLDPAL 355 (457)
T ss_pred CCceEEEEecCChhhcCHhh
Confidence 33448999999999999985
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.90 E-value=3.9e-10 Score=115.32 Aligned_cols=141 Identities=21% Similarity=0.203 Sum_probs=78.0
Q ss_pred CcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
.+|.|++..++.+...+...... .......+..+.++||+||||||||++|+++|..+...++.+... .+.....
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s----eL~~k~~ 258 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS----ELIQKYL 258 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc----hhhhhhc
Confidence 46788888777665554321111 000111234557899999999999999999999887766544211 1111111
Q ss_pred eeCCeeeeeccccc---cCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 393 KDGGEWMLEAGALV---LADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 393 ~~~~~~~~~~g~l~---~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
.. +.. .....+. ...++|+||||||.+.. +.+..+.+.+.+- .|.. ...++.||+|
T Consensus 259 Ge-~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L------dg~~--~~~~V~VI~A 328 (438)
T PTZ00361 259 GD-GPK-LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL------DGFD--SRGDVKVIMA 328 (438)
T ss_pred ch-HHH-HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH------hhhc--ccCCeEEEEe
Confidence 11 000 0001111 12467999999997632 1234455554320 1110 1235789999
Q ss_pred ecCCCCCCCC
Q 011953 459 TNPKGHYDPN 468 (474)
Q Consensus 459 tNp~~~~d~~ 468 (474)
||.+..+|++
T Consensus 329 TNr~d~LDpa 338 (438)
T PTZ00361 329 TNRIESLDPA 338 (438)
T ss_pred cCChHHhhHH
Confidence 9987777775
No 109
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.89 E-value=4.9e-09 Score=106.20 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=81.8
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce-----EEEeCCCcc--cC
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-----VITTGLGST--SA 385 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~-----~~~~~~~~~--~~ 385 (474)
..++++.+...+.++.+|..+ .|++|+||||||||++|+.++...... +..+..+.. ..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 446677777777777777654 679999999999999999999775321 111111100 00
Q ss_pred CceEEEEeeCCeeeeecccc----ccC-----CceEEEEcCCCCCChHh-HHHHHHHHHhc------EEEEE--E-cCee
Q 011953 386 GLTVTAVKDGGEWMLEAGAL----VLA-----DGGLCCIDEFDSMREHD-RATIHEAMEQQ------TISVA--K-AGLV 446 (474)
Q Consensus 386 ~l~~~~~~~~~~~~~~~g~l----~~a-----~~gil~iDEid~~~~~~-~~~l~~~me~~------~~~i~--~-~g~~ 446 (474)
.+.....-....+....|.+ ..| .+.+++|||||+.+.+. ...+..+||.+ .+.+. . .+..
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 00000000011233444532 111 35799999999998654 66778888853 12211 1 1234
Q ss_pred EeeCCCeEEEEeecCCC
Q 011953 447 TTLSTRTIIFGATNPKG 463 (474)
Q Consensus 447 ~~~~~~~~viaatNp~~ 463 (474)
...+.++.||||+|..+
T Consensus 320 f~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 320 FYVPENVYIIGLMNTAD 336 (459)
T ss_pred ccCCCCeEEEEecCccc
Confidence 56788999999999864
No 110
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.7e-09 Score=100.05 Aligned_cols=107 Identities=25% Similarity=0.323 Sum_probs=69.5
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeecccccc--------CCceEEEE
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL--------ADGGLCCI 415 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~--------a~~gil~i 415 (474)
+..+..++|+||||||||.+|++++...+..+..+..+. +... ...+++.+.. ..++++|+
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~----lv~k-------yiGEsaRlIRemf~yA~~~~pciifm 231 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA----LVDK-------YIGESARLIRDMFRYAREVIPCIIFM 231 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh----hhhh-------hcccHHHHHHHHHHHHhhhCceEEee
Confidence 455678999999999999999999999887665442221 2111 1122222221 24689999
Q ss_pred cCCCCCC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 416 DEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 416 DEid~~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
||||... ...|..|.+.+.+ . .| .....++-+|.|+|.+..+||+.
T Consensus 232 deiDAigGRr~se~Ts~dreiqrTLMeLlnq-m-----dg--fd~l~rVk~ImatNrpdtLdpaL 288 (388)
T KOG0651|consen 232 DEIDAIGGRRFSEGTSSDREIQRTLMELLNQ-M-----DG--FDTLHRVKTIMATNRPDTLDPAL 288 (388)
T ss_pred hhhhhhccEEeccccchhHHHHHHHHHHHHh-h-----cc--chhcccccEEEecCCccccchhh
Confidence 9999752 2345556666553 1 11 11234678999999998888864
No 111
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.87 E-value=2.9e-09 Score=111.34 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=82.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDEF 418 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDEi 418 (474)
.++|+.|++||||+++|++++..+. .+++.+.+......+......+. +......|.+..+++|++||||+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 6799999999999999999998765 35665555443222111111110 12223467788899999999999
Q ss_pred CCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 419 d~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+.++...|..|..+++.+.+. +.|.....+.++++|+|||..
T Consensus 247 ~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 247 GEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred hhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCC
Confidence 999999999999999988765 455555667789999999863
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.87 E-value=3e-09 Score=118.29 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHhhcCC-----CccchhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCC
Q 011953 282 IPDDIIMQFKQFWSEFKDT-----PLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDP 356 (474)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~p 356 (474)
++.+++..+-.-|-..--. .......+.+.+...|+|++.+...+..++....... ..+-++..++||+|||
T Consensus 531 v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~ 607 (857)
T PRK10865 531 VTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRPIGSFLFLGPT 607 (857)
T ss_pred cCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEECCC
Confidence 5666666665555332110 0001234677889999999998887777664320000 0011222368999999
Q ss_pred CcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEee-CCee--eeecc----ccccCCceEEEEcCCCCCChHhH
Q 011953 357 GTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKD-GGEW--MLEAG----ALVLADGGLCCIDEFDSMREHDR 426 (474)
Q Consensus 357 GtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~-~~~~--~~~~g----~l~~a~~gil~iDEid~~~~~~~ 426 (474)
|||||++|+++++.+. .+++...+.............+ ...+ ....| .+.....+|++|||++++.++.+
T Consensus 608 G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~ 687 (857)
T PRK10865 608 GVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVF 687 (857)
T ss_pred CCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHH
Confidence 9999999999998753 2343332211110000000000 0000 00111 12223458999999999999999
Q ss_pred HHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+.|+++|++|.++- ..|...... ++++|+|||.
T Consensus 688 ~~Ll~ile~g~l~d-~~gr~vd~r-n~iiI~TSN~ 720 (857)
T PRK10865 688 NILLQVLDDGRLTD-GQGRTVDFR-NTVVIMTSNL 720 (857)
T ss_pred HHHHHHHhhCceec-CCceEEeec-ccEEEEeCCc
Confidence 99999999998863 223333332 4679999997
No 113
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.85 E-value=3.4e-09 Score=111.13 Aligned_cols=113 Identities=20% Similarity=0.296 Sum_probs=81.7
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
..++|+.|++||||+.+|++++..+++ +++...+......+......+. +......|.+..+++|++||||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 467999999999999999999998763 5666655443221111111110 1122346777889999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
++.++...|..|+.+++++.+. +.|.....+.++++|+|||.
T Consensus 241 i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 241 IGDMPLDVQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred cccCCHHHHHHHHHHHhcCcEE--eCCCCCeEEeeEEEEEeCCC
Confidence 9999999999999999988775 34444445567899999986
No 114
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2e-09 Score=105.08 Aligned_cols=105 Identities=30% Similarity=0.403 Sum_probs=66.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC---CeeeeeccccccCCce-EEEEcCCCC---
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG---GEWMLEAGALVLADGG-LCCIDEFDS--- 420 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~g~l~~a~~g-il~iDEid~--- 420 (474)
.|||++||||||||++||-+++-++...- +..++..++|....+... -.|.. .+..| ++||||.|.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA-~mTGGDVAPlG~qaVTkiH~lFDWak------kS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYA-IMTGGDVAPLGAQAVTKIHKLFDWAK------KSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCcee-hhcCCCccccchHHHHHHHHHHHHHh------hcccceEEEehhhHHHHH
Confidence 57999999999999999999998886332 223344444433222110 11211 23444 789999985
Q ss_pred ------CChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 421 ------MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 421 ------~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
|+.+.+.+|..++=. .|. ...++.++.|||.||.||.+.
T Consensus 458 eRnktymSEaqRsaLNAlLfR-------TGd---qSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALLFR-------TGD---QSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred HhchhhhcHHHHHHHHHHHHH-------hcc---cccceEEEeccCCccchhHHH
Confidence 455556666555431 121 133678999999999998764
No 115
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=5.4e-09 Score=108.40 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=67.5
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeC--CC---------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG--LG--------- 381 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~--~~--------- 381 (474)
+.+++|++.+++.+...+..+ +-+..+||+||||||||++|+++++.....-.... ++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 457999999988888777664 11244899999999999999999987643110000 00
Q ss_pred --cc--cCCceEEEEeeCCee--eee-cc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 382 --ST--SAGLTVTAVKDGGEW--MLE-AG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 382 --~~--~~~l~~~~~~~~~~~--~~~-~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.. ...+.++..++.... ... .. .-..++..+++|||++.+..+.+++|+..|++
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~ 143 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE 143 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh
Confidence 00 000111000000000 000 00 01224567999999999999899999999986
No 116
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.82 E-value=2.1e-09 Score=111.12 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=84.3
Q ss_pred ccccceecCCCCcchhHHHHHHHHhcCc--eEEEeCCCcccCCceEEEEeeC--Ce-----eeeeccccccCCceEEEEc
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLGSTSAGLTVTAVKDG--GE-----WMLEAGALVLADGGLCCID 416 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~~~--~~~~~~~~~~~~~l~~~~~~~~--~~-----~~~~~g~l~~a~~gil~iD 416 (474)
.+.++|+.|+|||||..++|+++..+.. ++..+++......+..+...+- |. .....|.+.+|++|++|+|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 3588999999999999999999987653 4555555443322222211110 10 1123577788999999999
Q ss_pred CCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 417 EFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 417 Eid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
||..|+-+.|..|+.+++++.|. .-|... .+.+++||+||+.
T Consensus 415 eIgd~p~~~Qs~LLrVl~e~~v~--p~g~~~-~~vdirvi~ath~ 456 (606)
T COG3284 415 EIGDMPLALQSRLLRVLQEGVVT--PLGGTR-IKVDIRVIAATHR 456 (606)
T ss_pred HhhhchHHHHHHHHHHHhhCcee--ccCCcc-eeEEEEEEeccCc
Confidence 99999999999999999999986 556666 7889999999987
No 117
>PLN03025 replication factor C subunit; Provisional
Probab=98.80 E-value=1.1e-08 Score=101.64 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=71.6
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEe
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~ 393 (474)
.+++|++.+...+...+..+ ...|+||+||||||||++|+++++......+.. ....+.++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~----~~~eln~sd~~ 76 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKE----AVLELNASDDR 76 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCcc----ceeeecccccc
Confidence 46779999888776544432 114799999999999999999998752111000 00001110000
Q ss_pred eCC-------eeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 394 DGG-------EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 394 ~~~-------~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
+.. .+......+......+++|||+|.|....+++|...||.- +..+.++.++|....+
T Consensus 77 ~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~~i 142 (319)
T PLN03025 77 GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSSKI 142 (319)
T ss_pred cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcccc
Confidence 000 0000000011124579999999999999999999999841 1234566677765433
No 118
>PRK15115 response regulator GlrR; Provisional
Probab=98.79 E-value=8.5e-09 Score=107.39 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=81.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
+.++++.|++||||+.+|+++++.++ .+++...+......+......+. +......|.+..+++|++||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 36799999999999999999999876 35666555433211111111110 1122345677788999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
++.++.+.|..|..+++++.+. ..|.......++++|+||+.
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~~ 278 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATHR 278 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCCC
Confidence 9999999999999999988764 44555555668899999986
No 119
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.78 E-value=3.2e-09 Score=102.37 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=67.2
Q ss_pred cccchHHH--HHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE-eCCCcccCCceEEE
Q 011953 315 QVFGLFTV--KLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT-TGLGSTSAGLTVTA 391 (474)
Q Consensus 315 ~i~G~~~~--K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~-~~~~~~~~~l~~~~ 391 (474)
+++|++.+ ..+++..++... .+ -.++|+||||||||+|||.|+..+..+-|. +....+.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~--------~i---pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~----- 202 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN--------RI---PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK----- 202 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC--------CC---CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc-----
Confidence 66777775 346666665421 11 239999999999999999999887654221 111111110
Q ss_pred EeeCCeeeeec-c-ccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEE
Q 011953 392 VKDGGEWMLEA-G-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTIS 439 (474)
Q Consensus 392 ~~~~~~~~~~~-g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~ 439 (474)
..+-...+..+ . ......+-|+|||||++++...|..++-.+|.|.+.
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~ 252 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT 252 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE
Confidence 11100000000 0 011124579999999999999999999999988775
No 120
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.78 E-value=2.6e-09 Score=117.76 Aligned_cols=142 Identities=22% Similarity=0.185 Sum_probs=80.9
Q ss_pred cCcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+++.+...+...... .......+..+.++||+||||||||++|+++++..+..++......... ..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~----~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS----KY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc----cc
Confidence 445779888887775544322111 0001122344578999999999999999999999887766543211110 00
Q ss_pred EeeCCe-eeeeccccccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGE-WMLEAGALVLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~-~~~~~g~l~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
...... ............++|+||||+|.+.+ ..++.|+..|+.-. -..++.||+||
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~at 321 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGAT 321 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeec
Confidence 000000 00000001122457999999998743 23445666665310 12357899999
Q ss_pred cCCCCCCCCC
Q 011953 460 NPKGHYDPNL 469 (474)
Q Consensus 460 Np~~~~d~~~ 469 (474)
|++..+|++.
T Consensus 322 n~~~~ld~al 331 (733)
T TIGR01243 322 NRPDALDPAL 331 (733)
T ss_pred CChhhcCHHH
Confidence 9988787753
No 121
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.77 E-value=7.7e-09 Score=106.44 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=66.9
Q ss_pred CcccchHHHHH---HHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 314 PQVFGLFTVKL---AVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 314 p~i~G~~~~K~---ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
.+++|++.+.. .+...+-++ ...+++|+||||||||++|+++++.....++........
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~------ 73 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG------ 73 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc------
Confidence 36788887742 244333332 124799999999999999999999877666554322110
Q ss_pred EEeeCCeeeeec-cccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEE
Q 011953 391 AVKDGGEWMLEA-GALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTI 438 (474)
Q Consensus 391 ~~~~~~~~~~~~-g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~ 438 (474)
..+........ .......+.+++|||++.+....++.|+..|+.+.+
T Consensus 74 -~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i 121 (413)
T PRK13342 74 -VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI 121 (413)
T ss_pred -HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE
Confidence 00000000000 001122567999999999999999999999987554
No 122
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3e-08 Score=107.63 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=98.8
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGS 382 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~ 382 (474)
..+.+.+...|.||+++-.||..++...... .+.+ .++.-+||.||.|+|||.||+++|...- ..++......
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~g---l~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 554 KKLEERLHERVIGQDEAVAAIAAAIRRSRAG---LKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhhhcc---cCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence 3567888999999999999999888763211 1111 3567799999999999999999998753 2344443332
Q ss_pred ccCCceEEEEeeCCeee--ee----ccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 383 TSAGLTVTAVKDGGEWM--LE----AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 383 ~~~~l~~~~~~~~~~~~--~~----~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
... ..........+. -. .+++-.....|++||||+++.++.++.|+++|++|.++- ..|....+. +++||
T Consensus 630 ~~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltD-s~Gr~Vd~k-N~I~I 705 (898)
T KOG1051|consen 630 FQE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTD-SHGREVDFK-NAIFI 705 (898)
T ss_pred hhh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCcccc-CCCcEeecc-ceEEE
Confidence 110 000000000011 11 123333455799999999999999999999999999973 344444444 68999
Q ss_pred EeecC
Q 011953 457 GATNP 461 (474)
Q Consensus 457 aatNp 461 (474)
.|+|.
T Consensus 706 MTsn~ 710 (898)
T KOG1051|consen 706 MTSNV 710 (898)
T ss_pred Eeccc
Confidence 99997
No 123
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=8e-09 Score=105.80 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=67.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEE----EeCCCcc----
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI----TTGLGST---- 383 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~----~~~~~~~---- 383 (474)
-+.+++|++.+...+..++..+ +-.+.+||+||||||||++|+.+++....... ..+...+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i 84 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHH
Confidence 3457899999999888777664 11133899999999999999999987653210 0000000
Q ss_pred cCCceEEEE-eeC----Ce--ee-eecccc---ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 SAGLTVTAV-KDG----GE--WM-LEAGAL---VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ~~~l~~~~~-~~~----~~--~~-~~~g~l---~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+....+. .+. +. .. +..... ......|++|||++.++.+.+++|+..||+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE 147 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE 147 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc
Confidence 001000000 000 00 00 000000 112345999999999999999999999986
No 124
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.70 E-value=2.4e-08 Score=104.61 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=81.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDE 417 (474)
..++++.|++||||+++|+++++.+++ +++...+......+..+...+. +......|.+..+++|++||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 367999999999999999999988653 5666655443221111111110 1111235667788999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
++.++.+.|..|+++++++.+. +.|.....+.++++|+|+|..
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFY--RVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--ECCCCceeeeeeEEEEeCCCC
Confidence 9999999999999999988876 444444556678899999863
No 125
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.70 E-value=3.4e-09 Score=99.50 Aligned_cols=114 Identities=24% Similarity=0.333 Sum_probs=79.2
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc------CceEEEeCCCcccCC-----ceEEEEeeC--CeeeeeccccccCCce
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS------NRSVITTGLGSTSAG-----LTVTAVKDG--GEWMLEAGALVLADGG 411 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~------~~~~~~~~~~~~~~~-----l~~~~~~~~--~~~~~~~g~l~~a~~g 411 (474)
|+..++||.||+|.|||.||+.|.++- .-.+..+++....+. |... +++. |......|.+-.|+||
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh-vkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH-VKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh-hccccccchhhhhhhhccCCCc
Confidence 445789999999999999999998542 223444433322111 1111 1111 2233457888899999
Q ss_pred EEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 412 LCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 412 il~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.+|+|||..+..+.|..|+.++|+..+. .-|.......++.+||.|-+
T Consensus 285 mlfldeigelgadeqamllkaieekrf~--pfgsdr~v~sdfqliagtvr 332 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEEKRFY--PFGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHhhccC--CCCCccccccchHHhhhhHH
Confidence 9999999999999999999999987664 45555566677888887743
No 126
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.69 E-value=2.5e-08 Score=103.77 Aligned_cols=112 Identities=22% Similarity=0.334 Sum_probs=81.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDEF 418 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDEi 418 (474)
.+++++|++||||+.+|++++..++ .+++...+......+......+. +......|.+..+++|++||||+
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei 242 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEecc
Confidence 6799999999999999999998776 35666665543222111111110 11122457788899999999999
Q ss_pred CCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 419 d~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+.|++..|..|+.+++.+.+. +.|.....+.++++|+||+.
T Consensus 243 ~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~ 283 (441)
T PRK10365 243 GDISPMMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHR 283 (441)
T ss_pred ccCCHHHHHHHHHHHccCcEE--eCCCCceeeeceEEEEeCCC
Confidence 999999999999999998865 45555566778899999875
No 127
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.68 E-value=3e-08 Score=86.05 Aligned_cols=86 Identities=24% Similarity=0.422 Sum_probs=61.4
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCce---EEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~ 423 (474)
+.+|||+|+|||||+.+|++++...... +....+.. .....+..+.+|+++|+|++.+++
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-----------------~~~~~l~~a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-----------------LPAELLEQAKGGTLYLKNIDRLSP 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-----------------TCHHHHHHCTTSEEEEECGCCS-H
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-----------------CcHHHHHHcCCCEEEECChHHCCH
Confidence 3679999999999999999999987652 11111100 012234456899999999999999
Q ss_pred HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 424 HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 424 ~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+.|..|.+.++... ..++++|+++..
T Consensus 84 ~~Q~~L~~~l~~~~------------~~~~RlI~ss~~ 109 (138)
T PF14532_consen 84 EAQRRLLDLLKRQE------------RSNVRLIASSSQ 109 (138)
T ss_dssp HHHHHHHHHHHHCT------------TTTSEEEEEECC
T ss_pred HHHHHHHHHHHhcC------------CCCeEEEEEeCC
Confidence 99999999998621 235678888865
No 128
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.63 E-value=1.5e-08 Score=109.59 Aligned_cols=110 Identities=25% Similarity=0.265 Sum_probs=62.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChH--
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREH-- 424 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~-- 424 (474)
.++||+||||||||+++++++..++.+++......... ...... ..............++|+||||+|.+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~----~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE----MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH----hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC
Confidence 46999999999999999999999988777643221110 000000 00000000011235689999999997321
Q ss_pred ---------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 425 ---------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 425 ---------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
....+.+.+.. ..|. .-+.++.+|||||+++.+||+.
T Consensus 262 ~~~~g~~~~~~~~ln~lL~~------mdg~--~~~~~vivIaaTN~p~~lD~Al 307 (644)
T PRK10733 262 AGLGGGHDEREQTLNQMLVE------MDGF--EGNEGIIVIAATNRPDVLDPAL 307 (644)
T ss_pred CCCCCCchHHHHHHHHHHHh------hhcc--cCCCCeeEEEecCChhhcCHHH
Confidence 11122222211 0111 1134679999999988888764
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.62 E-value=3.3e-08 Score=98.18 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=74.7
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
+.++.|++.+++.+...+-.|. .+..+||+||||+|||++++++++..+..++...... .. ....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~--~~~i 84 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-----------IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR--IDFV 84 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-----------CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc--HHHH
Confidence 4478899999888876665431 1133555899999999999999987765444332221 00 0000
Q ss_pred eeC-Ceeeeecccc-ccCCceEEEEcCCCCC-ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 393 KDG-GEWMLEAGAL-VLADGGLCCIDEFDSM-REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 393 ~~~-~~~~~~~g~l-~~a~~gil~iDEid~~-~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
++. ..+ .... ..+...+++|||++.+ ..+.+..|...|+.. +.++.+|.++|.+..+
T Consensus 85 ~~~l~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 85 RNRLTRF---ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKNGI 144 (316)
T ss_pred HHHHHHH---HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChhhc
Confidence 000 000 0000 1245789999999999 666777888888751 2345788888865433
No 130
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.62 E-value=1.8e-08 Score=91.78 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=68.4
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+...+|+|+++.-..+..-.-.| +--|+++.||||||||+-+.++|+.+--..|--+. -.|.++
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v----LELNAS 87 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAV----LELNAS 87 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHh----hhccCc
Confidence 34558999999888776555444 12579999999999999999998754221111100 012222
Q ss_pred EEeeCC-------eeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 391 AVKDGG-------EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 391 ~~~~~~-------~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..++.. .+.-..-.+......|+++||.|.|....|.+|...||-
T Consensus 88 deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi 139 (333)
T KOG0991|consen 88 DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI 139 (333)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH
Confidence 222210 011011112223456999999999999999999999993
No 131
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.62 E-value=2.6e-08 Score=96.24 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=63.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEe---CCCc--ccCC----ceEEEEeeCCeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT---GLGS--TSAG----LTVTAVKDGGEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~---~~~~--~~~~----l~~~~~~~~~~~~~~~g~l~~a~~gil~iDE 417 (474)
..++||+||+|||||.+++..-+..+...+.. .... ++.. +.....+..+. .+.| ......|+||||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~~gP---~~~k~lv~fiDD 108 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR-VYGP---PGGKKLVLFIDD 108 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE-EEEE---ESSSEEEEEEET
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC-CCCC---CCCcEEEEEecc
Confidence 37899999999999999988775544322211 1111 1100 11111111121 2222 123456999999
Q ss_pred CCCCChH------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CC
Q 011953 418 FDSMREH------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GH 464 (474)
Q Consensus 418 id~~~~~------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~ 464 (474)
++...++ ..+.|++.|+.+.+.-.+.-.+..+. ++.++||+||. |+
T Consensus 109 lN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~-~i~~vaa~~p~~Gr 161 (272)
T PF12775_consen 109 LNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIE-DIQFVAAMNPTGGR 161 (272)
T ss_dssp TT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEEC-SEEEEEEESSTTT-
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEe-eeEEEEecCCCCCC
Confidence 9986544 24678889998877632223344444 68899999996 54
No 132
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1e-07 Score=103.41 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=67.3
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceecccc-ceecCCCCcchhHHHHHHHHhcCceEEEe--CCCcc------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGST------ 383 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~~------ 383 (474)
+.+|+|++.+++.|.-++..| ++ .| +||+||||||||++||.+++......... .++..
T Consensus 15 FddIIGQe~Iv~~LknaI~~~---------rl---~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQ---------RL---HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhC---------CC---CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 347889999999888777664 11 34 58999999999999999998765421100 01000
Q ss_pred cCCceEEEE-eeC----Ceeeee--cccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 SAGLTVTAV-KDG----GEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ~~~l~~~~~-~~~----~~~~~~--~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+...... .+. +...++ ...+ ..+...|++|||+++|+.+.+++|+..||+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE 145 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE 145 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 001000000 000 000000 0000 123456999999999999999999999996
No 133
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=4.8e-08 Score=103.01 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=68.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc--------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS-------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~-------- 382 (474)
+.+|+|++.+++.+.-++..| +-.+.+||+||||||||++|+++|+........ ..++.
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 447899999999998888765 112457999999999999999999876431100 00000
Q ss_pred --ccCCc---eEEEEeeCCee--eeecccc--ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 --TSAGL---TVTAVKDGGEW--MLEAGAL--VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 --~~~~l---~~~~~~~~~~~--~~~~g~l--~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....+ .++........ ....... ..+...|++|||++.|+....++|+..||+
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE 144 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE 144 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 00011 11000000000 0000000 123456999999999999999999999986
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.60 E-value=4.3e-08 Score=107.87 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=70.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc----------CceEEEeCCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLG 381 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~----------~~~~~~~~~~ 381 (474)
-...++|++.....++..|... ...|++|+||||||||++++++++.. +..++.....
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 3446789988877766555442 23679999999999999999999764 3334433221
Q ss_pred cccCCceEEEEeeCCeeeeeccccc----cCCceEEEEcCCCCCCh---------HhHHHHHHHHHhcEEEEEEcCeeEe
Q 011953 382 STSAGLTVTAVKDGGEWMLEAGALV----LADGGLCCIDEFDSMRE---------HDRATIHEAMEQQTISVAKAGLVTT 448 (474)
Q Consensus 382 ~~~~~l~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEid~~~~---------~~~~~l~~~me~~~~~i~~~g~~~~ 448 (474)
...++ .... |+|......+. ...+.|+||||++.+.. +.++.|...|+.|.
T Consensus 248 ~l~a~---~~~~--g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~----------- 311 (731)
T TIGR02639 248 SLLAG---TKYR--GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK----------- 311 (731)
T ss_pred HHhhh---cccc--chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-----------
Confidence 11110 0000 12211111111 22467999999998742 23555666666543
Q ss_pred eCCCeEEEEeecC
Q 011953 449 LSTRTIIFGATNP 461 (474)
Q Consensus 449 ~~~~~~viaatNp 461 (474)
+.+|||||+
T Consensus 312 ----i~~IgaTt~ 320 (731)
T TIGR02639 312 ----LRCIGSTTY 320 (731)
T ss_pred ----eEEEEecCH
Confidence 468999997
No 135
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=9.6e-08 Score=96.59 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=66.3
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE-EEe-CCCc--c----c
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-ITT-GLGS--T----S 384 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~-~~~-~~~~--~----~ 384 (474)
+.+|+||+.+++.+..++..| +-++.+||+||||||||++|+++++...... +.. .++. + .
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 347889999999988777664 1123469999999999999999998764211 000 0000 0 0
Q ss_pred CCceEEEE-eeCC--eeeeec----ccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 385 AGLTVTAV-KDGG--EWMLEA----GAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 385 ~~l~~~~~-~~~~--~~~~~~----g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+...... .+.. ...... ..+ ..++..|++|||++.++...+++|+..||+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe 145 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc
Confidence 00000000 0000 000000 000 123456999999999999889999999986
No 136
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.59 E-value=3.2e-08 Score=107.44 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=65.8
Q ss_pred CcccchHHHHH--HHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 314 PQVFGLFTVKL--AVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 314 p~i~G~~~~K~--ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
.+++|++.+.. ..+..++.. ....|++|+||||||||++|+++++.....+........ ++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-----------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-----------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--GV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--hh----
Confidence 46789888753 233333332 012579999999999999999999887655443322110 00
Q ss_pred EeeCCeeeeec-cccc-cCCceEEEEcCCCCCChHhHHHHHHHHHhcEE
Q 011953 392 VKDGGEWMLEA-GALV-LADGGLCCIDEFDSMREHDRATIHEAMEQQTI 438 (474)
Q Consensus 392 ~~~~~~~~~~~-g~l~-~a~~gil~iDEid~~~~~~~~~l~~~me~~~~ 438 (474)
.+........ ..+. ...++++||||++.++...+++|+..++++.+
T Consensus 91 -~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I 138 (725)
T PRK13341 91 -KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTI 138 (725)
T ss_pred -HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceE
Confidence 0000000000 0011 12457999999999999999999999987654
No 137
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.5e-08 Score=104.84 Aligned_cols=112 Identities=23% Similarity=0.238 Sum_probs=67.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce----E--EE-eCCCc---
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----V--IT-TGLGS--- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~----~--~~-~~~~~--- 382 (474)
+.+|+||+.+++.|.-.+..| |-.+-+||+||+|||||++++.+++.+... . .. ..++.
T Consensus 15 FddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 447899999999998887765 111336999999999999999999876531 0 00 00000
Q ss_pred -------ccCCceE-EEEeeCC--eee-eeccc-c--ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -------TSAGLTV-TAVKDGG--EWM-LEAGA-L--VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -------~~~~l~~-~~~~~~~--~~~-~~~g~-l--~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....+.. ......+ ... +.... . ......|++|||+|.|+....++|+..||+
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 0000000 0000000 000 00000 0 112346999999999999999999999986
No 138
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=4.7e-08 Score=102.50 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=67.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc--------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS-------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~-------- 382 (474)
+.+|+|++.+++.+.-++..+ +-.+.+||+||||||||++|+.+++.....-.. ..++.
T Consensus 15 f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 347899999999999888664 112347999999999999999999876431100 00000
Q ss_pred --ccCC---ceEEEEeeCCeee--eecc--ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 --TSAG---LTVTAVKDGGEWM--LEAG--ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 --~~~~---l~~~~~~~~~~~~--~~~g--~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...+ +.++......... .+.- .-..+...|++|||++.|+.+..++|+..||+
T Consensus 84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe 145 (509)
T PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE 145 (509)
T ss_pred cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence 0000 0100000000000 0000 00112446999999999999999999999996
No 139
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=7.2e-08 Score=102.77 Aligned_cols=112 Identities=26% Similarity=0.268 Sum_probs=67.3
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCc------cc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS------TS 384 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~------~~ 384 (474)
+.+|+||+.+++.|.-.+-+| +-.+-+||+||+|||||++++.+++.+....... .++. ..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 347889999999998777664 1113369999999999999999998765311100 0100 00
Q ss_pred CC-ceEEEEeeC--Ceee------eecc--ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 385 AG-LTVTAVKDG--GEWM------LEAG--ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 385 ~~-l~~~~~~~~--~~~~------~~~g--~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+ .......+. .... ++.- .-......|++|||+|.|+...+++|+..||+
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE 145 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE 145 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh
Confidence 00 000000000 0000 0000 00113457999999999999999999999996
No 140
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=9.2e-08 Score=97.06 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=70.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEE-EeCCC---------
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTGLG--------- 381 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~-~~~~~--------- 381 (474)
.+.+|+|++.+++.+.-.+..+.......+. +-.+.+||+||||+|||++|+.+++...-..- ...++
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~--~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGS--GMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCC--CCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 3567999999999988888775321111111 12356999999999999999999976422100 00000
Q ss_pred -cccCCceEEEEe-e-CC-----eeeeecc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 382 -STSAGLTVTAVK-D-GG-----EWMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 382 -~~~~~l~~~~~~-~-~~-----~~~~~~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+.+++...... . .+ ....... .-..+...|++|||+|.|++..+++|+..||+
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 000111000000 0 00 0000000 00123456999999999999999999999986
No 141
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.7e-08 Score=108.78 Aligned_cols=144 Identities=24% Similarity=0.276 Sum_probs=81.7
Q ss_pred cccCcccchHHH----HHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCC
Q 011953 311 GICPQVFGLFTV----KLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAG 386 (474)
Q Consensus 311 ~~~p~i~G~~~~----K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~ 386 (474)
-=+++|.|.+.+ |+.+++-|..+.. -+...+.++.++|++||||||||+.|++++..+.+..-....+.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~---f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm---- 334 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEF---FDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM---- 334 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhH---hhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhh----
Confidence 346788888775 5555555555411 12334556677999999999999999999987654221110000
Q ss_pred ceEEEEeeC---Ceeeeecccc--------ccCCceEEEEcCCCCCChH---hHHHHHHHHHhcEEEEEEcCeeEeeCCC
Q 011953 387 LTVTAVKDG---GEWMLEAGAL--------VLADGGLCCIDEFDSMREH---DRATIHEAMEQQTISVAKAGLVTTLSTR 452 (474)
Q Consensus 387 l~~~~~~~~---~~~~~~~g~l--------~~a~~gil~iDEid~~~~~---~~~~l~~~me~~~~~i~~~g~~~~~~~~ 452 (474)
.++. +.|+.++..- ....+.|+|+||||-+.+- -|...|.-+-.-.+. ...|... ...
T Consensus 335 -----rkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLa-LmdGlds--Rgq 406 (1080)
T KOG0732|consen 335 -----RKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLA-LMDGLDS--RGQ 406 (1080)
T ss_pred -----hcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHH-hccCCCC--CCc
Confidence 1111 4455554321 1235689999999976441 233332222111110 0122211 235
Q ss_pred eEEEEeecCCCCCCCCC
Q 011953 453 TIIFGATNPKGHYDPNL 469 (474)
Q Consensus 453 ~~viaatNp~~~~d~~~ 469 (474)
++||||||++...||+.
T Consensus 407 VvvigATnRpda~dpaL 423 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPAL 423 (1080)
T ss_pred eEEEcccCCccccchhh
Confidence 89999999987777764
No 142
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.51 E-value=2.7e-07 Score=92.40 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=65.2
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc-----eEEEeCCCcccCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAG 386 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-----~~~~~~~~~~~~~ 386 (474)
-..+++|++.++..+...+-.+ ...|+||+||||||||++|+++++.... .+...........
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~ 80 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ 80 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence 3456779999988887666443 0136999999999999999999986532 1111111100000
Q ss_pred ceEEEEeeCCeee----------------e------ecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 387 LTVTAVKDGGEWM----------------L------EAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 387 l~~~~~~~~~~~~----------------~------~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.. ........+. . ..+.. ..++..+++|||++.++.+.+..|...|+.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 81 GK-KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred ch-hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 00 0000000000 0 00000 124567999999999999888999999885
No 143
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=2.9e-07 Score=96.08 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=68.9
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeC------CCc--c
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG------LGS--T 383 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~------~~~--~ 383 (474)
-+.+++|++.+.+.+.-++..+ +-..++||+||||||||++|+.+++.........+ ++. +
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~ 87 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN 87 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence 3447889999999888766664 11367999999999999999999987653211000 000 0
Q ss_pred ----cCCceEEEE-eeC----C-----eeeeecc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 ----SAGLTVTAV-KDG----G-----EWMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ----~~~l~~~~~-~~~----~-----~~~~~~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+...... -+. + .....+. .-..++..|++|||++.++...+++|+..||+
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 000000000 000 0 0000000 00124568999999999999999999999985
No 144
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.3e-07 Score=99.28 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=67.7
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc--------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS-------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~-------- 382 (474)
+.+|+||+.+++.+...+..| +..+.+||+||||||||++|+.+++........ ..++.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 347889999999888777654 122348899999999999999999865421000 00000
Q ss_pred --ccCCceEE-EEeeCCe----eeee-cc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 --TSAGLTVT-AVKDGGE----WMLE-AG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 --~~~~l~~~-~~~~~~~----~~~~-~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....+..- .....+. .... .. .-..++..|++|||+++|+.+.+++|+..||+
T Consensus 84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe 145 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE 145 (546)
T ss_pred cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc
Confidence 00011000 0000000 0000 00 00223567999999999999999999999996
No 145
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.48 E-value=7.6e-07 Score=99.39 Aligned_cols=123 Identities=19% Similarity=0.292 Sum_probs=99.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc--CCceEEEEeeC-CeeeeeccccccC--CceEEEEcCCCCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--AGLTVTAVKDG-GEWMLEAGALVLA--DGGLCCIDEFDSMR 422 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~~~~g~l~~a--~~gil~iDEid~~~ 422 (474)
.++|+-||+.+|||.+..++|+..+..++..+.+... ....++++.+. |...++.|.++.| +|-.+++||++-++
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 6799999999999999999999999988877655542 23344444443 7788889999876 56689999999999
Q ss_pred hHhHHHHHHHHH-hcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCCC
Q 011953 423 EHDRATIHEAME-QQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLC 470 (474)
Q Consensus 423 ~~~~~~l~~~me-~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~~ 470 (474)
.+...+|...++ ++.+.|.........+.+++++||.||||-|.--+.
T Consensus 969 TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~ 1017 (4600)
T COG5271 969 TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKG 1017 (4600)
T ss_pred HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHH
Confidence 999999999998 577777777667777788999999999987754443
No 146
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=1.7e-07 Score=98.34 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=66.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
..+++|++.++..+...+-... .|. ...++||+||||||||++|+++++..+..++.......... ...
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~-----~g~---~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~---~~i 81 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWL-----KGK---PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA---DVI 81 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh-----cCC---CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---HHH
Confidence 3468899999887776654321 111 13679999999999999999999998766554432211000 000
Q ss_pred eeCCeeeeeccccccCCceEEEEcCCCCCCh----HhHHHHHHHHHh
Q 011953 393 KDGGEWMLEAGALVLADGGLCCIDEFDSMRE----HDRATIHEAMEQ 435 (474)
Q Consensus 393 ~~~~~~~~~~g~l~~a~~gil~iDEid~~~~----~~~~~l~~~me~ 435 (474)
...-........+......+++|||+|.+.. ....+|...++.
T Consensus 82 ~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 82 ERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred HHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 0000000000111112567999999999965 345667777763
No 147
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2.4e-07 Score=98.64 Aligned_cols=112 Identities=22% Similarity=0.227 Sum_probs=68.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCc--------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS-------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~-------- 382 (474)
+.+|+|++.+++.|...+..+ +-.+.+||+||+|||||++|+.+++......... .++.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 347899999999988877764 1124589999999999999999998754211100 0000
Q ss_pred --ccCCce-EEEEeeCCe----eeeecc-c-cccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 --TSAGLT-VTAVKDGGE----WMLEAG-A-LVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 --~~~~l~-~~~~~~~~~----~~~~~g-~-l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....+. .......+. ..+... . -..+...|++|||++.|+....++|+..||+
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE 145 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE 145 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh
Confidence 000010 000000010 000000 0 0123557999999999999999999999985
No 148
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.7e-07 Score=97.11 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=67.5
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEE--EeCCC---------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI--TTGLG--------- 381 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~--~~~~~--------- 381 (474)
+.+++||+.+++.+.-++..| +-.+++||+||||||||++|+.+|+...-..- ...++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 457899999999887666554 12367999999999999999999985421100 00000
Q ss_pred -cccCC---ceEEEEeeCCee--eee-cccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 382 -STSAG---LTVTAVKDGGEW--MLE-AGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 382 -~~~~~---l~~~~~~~~~~~--~~~-~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..... +.++...+.... ..+ .... ..+...|++|||++.++.+.+++|+..||+
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 00000 001000000000 000 0000 124567999999999999999999999996
No 149
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.7e-07 Score=94.41 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=67.3
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce-EEE---------eCCCc-
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-VIT---------TGLGS- 382 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~-~~~---------~~~~~- 382 (474)
.+|+||+.+++.+.-.+-.| +-.+.+||+||||+|||++|+++++..... ... ..++.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 37889999999887776654 112459999999999999999999875431 000 00100
Q ss_pred -------ccCCceEEEEeeCCee-e--ee--cccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -------TSAGLTVTAVKDGGEW-M--LE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -------~~~~l~~~~~~~~~~~-~--~~--~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
+...+........+.. . .. ...+ ..++..+++|||++.++...++.|+..+|+
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred HHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 0000111101000000 0 00 0001 234567999999999999889999999985
No 150
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.8e-07 Score=99.85 Aligned_cols=111 Identities=23% Similarity=0.172 Sum_probs=67.5
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceecccc-ceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc-------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~------- 382 (474)
+.+|+|++.+++.+.-.+-.|. -.| +||+||+|||||++|+.+++........ ..++.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR------------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 4578899999999887776641 134 5999999999999999999876532100 00100
Q ss_pred ---ccCCceE-EEEeeCCeeeee--cccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 ---TSAGLTV-TAVKDGGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 ---~~~~l~~-~~~~~~~~~~~~--~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...++.. ......+....+ ...+ ......|++|||+++|+...+++|+..||+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE 145 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc
Confidence 0001100 000000000000 0000 112346999999999999999999999996
No 151
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2.8e-07 Score=97.09 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=67.9
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCcc-------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGST------- 383 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~~------- 383 (474)
+.+++||+.+++.+.-++..| +..+.+||+||||+|||++|+.+|+.....-.. ..++..
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 447889999999888777654 122458999999999999999999875321000 011110
Q ss_pred ---cCCc---eEEEEeeCCe---eeeecc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 ---SAGL---TVTAVKDGGE---WMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ---~~~l---~~~~~~~~~~---~~~~~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...+ .++.....+. ...... .-..++..|++|||++.|+.+.+++|+..||+
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE 145 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE 145 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh
Confidence 0000 0000000000 000000 00124567999999999999999999999996
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=6e-07 Score=95.47 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=67.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCc--c-----
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS--T----- 383 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~--~----- 383 (474)
+.+++|++.+++.+.-++..+ +..+.+||+||+|||||++|+.+++.....--.. .++. +
T Consensus 15 f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 347889999999988887764 1124478999999999999999998754211000 0000 0
Q ss_pred -cCCceEEEEeeC----C-----eeeeecc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 -SAGLTVTAVKDG----G-----EWMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 -~~~l~~~~~~~~----~-----~~~~~~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....... ..+. + ....... .-..+...|++|||++.|+....++|+..||+
T Consensus 84 ~g~~~dv~-eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe 145 (559)
T PRK05563 84 NGSLMDVI-EIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE 145 (559)
T ss_pred cCCCCCeE-EeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC
Confidence 0000000 0000 0 0000000 00134567999999999999999999999985
No 153
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-07 Score=98.24 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=68.1
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcc---cCCceEEEEeeCCeeeeeccccccCCceEEEEcCCC
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST---SAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFD 419 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid 419 (474)
.++.+.++|++||||||||.+++++++..+..++....... ..|-+.+.++. . -..+...+.+.++||||+|
T Consensus 214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~---~--f~~a~k~~~psii~IdEld 288 (693)
T KOG0730|consen 214 GIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRK---A--FAEALKFQVPSIIFIDELD 288 (693)
T ss_pred CCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHH---H--HHHHhccCCCeeEeHHhHh
Confidence 45567889999999999999999999998865554432211 11111111110 0 0011111227899999999
Q ss_pred CCCh----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCC
Q 011953 420 SMRE----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 420 ~~~~----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~ 469 (474)
.+.+ ..-..|+..|+.-. -..++.||+|+|.+..+||+.
T Consensus 289 ~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~sld~al 337 (693)
T KOG0730|consen 289 ALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPDSLDPAL 337 (693)
T ss_pred hhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCccccChhh
Confidence 9864 12334566665310 124578999999987787764
No 154
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3e-07 Score=97.05 Aligned_cols=111 Identities=21% Similarity=0.179 Sum_probs=66.7
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc---------
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS--------- 382 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~--------- 382 (474)
.+|+|++.+++.+..++..+ +-.+.+||+||||+|||++|+.+++...-.... ..++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 46889999999988777664 111336999999999999999999876421100 01110
Q ss_pred -ccCCceEEE-EeeCC--e--eeee-c-cccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -TSAGLTVTA-VKDGG--E--WMLE-A-GALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -~~~~l~~~~-~~~~~--~--~~~~-~-g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....+.... ....+ . .... . ..-..+...|++|||+|+|+.+.+++|+..||+
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe 145 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE 145 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC
Confidence 000010000 00000 0 0000 0 000123457999999999999999999999986
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.42 E-value=8.5e-08 Score=106.81 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=36.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...++|++..-..++..|... ...|++|+||||||||++++.++...
T Consensus 177 l~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 345889888766666555442 23679999999999999999999875
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.2e-06 Score=88.85 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=67.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
..+++|++.+++.+...+-.| +-..++||+||||+|||++|+++++........... ..........
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~--~~~~~~~~~l 82 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN--EDFSFNIFEL 82 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--CCCCcceEEe
Confidence 346789999999888777664 113579999999999999999999876432111000 0000000000
Q ss_pred eeCC-----ee---eeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 393 KDGG-----EW---MLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 393 ~~~~-----~~---~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...+ .. ....... ..++..+++|||++.+....++.++..+++
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~ 134 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE 134 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0000 00 0000000 123567999999999998888888888875
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.42 E-value=1.2e-07 Score=81.15 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
.+++|+||||||||++++.++......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 579999999999999999999887764
No 158
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=2.8e-07 Score=97.50 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=67.7
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCcc------c
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGST------S 384 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~~------~ 384 (474)
+.+|+|++.+++.|...+..+ +-..++||+||||||||++|+.+++......... .++.- .
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 346789999988888777654 1125688999999999999999998765311000 00000 0
Q ss_pred CC--ceEEEEeeCCeeeee-cccc--------ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 385 AG--LTVTAVKDGGEWMLE-AGAL--------VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 385 ~~--l~~~~~~~~~~~~~~-~g~l--------~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+ .....+........+ ...+ ..+...|++|||++.|+.+.+++|+..||+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE 145 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE 145 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc
Confidence 00 000001000000000 0000 123457999999999999999999999986
No 159
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1e-06 Score=93.51 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=68.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceecccc-ceecCCCCcchhHHHHHHHHhcCceE--EEeCCCc-------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSV--ITTGLGS------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~la~~ia~~~~~~~--~~~~~~~------- 382 (474)
+.+|+||+.+++.+...+..|. -.| +||+||+|||||++|+.+++...-.- -...++.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR------------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC------------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 4578899999999888877651 144 69999999999999999998654210 0000100
Q ss_pred -c--cCCceEEEEeeC-Ce-eeeec----c----ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -T--SAGLTVTAVKDG-GE-WMLEA----G----ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -~--~~~l~~~~~~~~-~~-~~~~~----g----~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
. ....... ..+. .. ..... . .-..++..|++|||++.|+.+.+++|+..||+
T Consensus 80 ~~~~~~~~dvi-eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 80 APNGPGSIDVV-ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred hcccCCCceEE-EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc
Confidence 0 0001110 0011 00 00000 0 00124567999999999999999999999996
No 160
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4e-07 Score=95.33 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=66.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce-EEEeCCCcc------cC
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-VITTGLGST------SA 385 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~-~~~~~~~~~------~~ 385 (474)
+.+|+||+.+++.+...+..+. -.+-+||+||||||||++|+++++..... -....++.. ..
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-----------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-----------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 3478999999998887776641 11235999999999999999999875310 000011100 00
Q ss_pred CceEEEE-----eeCC-----eeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 386 GLTVTAV-----KDGG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 386 ~l~~~~~-----~~~~-----~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
+....+. ...+ ......... ..+...+++|||++.++.+.+++|+..|++
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe 142 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE 142 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh
Confidence 0000000 0000 000000000 124567999999999999999999999986
No 161
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=3.7e-07 Score=100.47 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=67.9
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEE--EeCCCcc--------
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI--TTGLGST-------- 383 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~--~~~~~~~-------- 383 (474)
.+|+||+.+++.|...+..+ +-.+-+||+||+|||||++|+.+++.+.-..- ...++.-
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47889999999988877664 11233799999999999999999987642100 0001000
Q ss_pred c--CCceEEEEeeCCee-e-----eec---cccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 S--AGLTVTAVKDGGEW-M-----LEA---GALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ~--~~l~~~~~~~~~~~-~-----~~~---g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
. ..+....+...... + +.. ..-......|++|||+|+|+...+++|+..||+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 0 00111111000000 0 000 000224567999999999999999999999996
No 162
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=4.1e-07 Score=90.30 Aligned_cols=106 Identities=19% Similarity=0.244 Sum_probs=63.6
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE-----EEeCCCcccCCce
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-----ITTGLGSTSAGLT 388 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~-----~~~~~~~~~~~l~ 388 (474)
.+++|++.++..+...+-.+. ..|++|+||||||||++++++++...... +.... +...+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~-~~~~~~~ 83 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA-SDERGID 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc-ccccchH
Confidence 357799999888877664431 13699999999999999999997653211 11100 0000000
Q ss_pred EEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 389 VTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 389 ~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...+. ..+ ....+...+...+++|||++.+..+.+..|...++.
T Consensus 84 --~~~~~i~~~-~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~ 128 (319)
T PRK00440 84 --VIRNKIKEF-ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM 128 (319)
T ss_pred --HHHHHHHHH-HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc
Confidence 00000 000 000111123467999999999999888899998874
No 163
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.37 E-value=1.3e-07 Score=105.13 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=37.6
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-...++|++..-..++..|... ...|++|+||||||||++++.+++..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~------------~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR------------RQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC------------CcCceeEECCCCCCHHHHHHHHHHHH
Confidence 34457889888777666655443 12579999999999999999999765
No 164
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=8.9e-07 Score=95.18 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe---CCCc--ccCCce
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT---GLGS--TSAGLT 388 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~---~~~~--~~~~l~ 388 (474)
.+|+||+.+++.+.-++..| +-.+.+||+||+|||||++|+.+|+.....-... .++. ...+..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 47889999999988888665 1124479999999999999999998754311100 0000 000000
Q ss_pred EEEE-eeC-Ceeee--------ecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 389 VTAV-KDG-GEWML--------EAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 389 ~~~~-~~~-~~~~~--------~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.... .++ +.... ..... ..+...|++|||++.|..+.+++|+..||+
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE 144 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE 144 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc
Confidence 0000 000 00000 00001 124567999999999999999999999996
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.33 E-value=3.8e-07 Score=101.61 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=70.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC----------ceEEEeCCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTGLGS 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~----------~~~~~~~~~~ 382 (474)
...++|.+...+.++..|... ...|++|+||||||||.+++.+|.... ..++......
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 345889988888877666542 236799999999999999999997542 3444432221
Q ss_pred ccCCceEEEEeeCCeeeeeccccc----cCCceEEEEcCCCCCCh--------HhHHHHHHHHHhcEEEEEEcCeeEeeC
Q 011953 383 TSAGLTVTAVKDGGEWMLEAGALV----LADGGLCCIDEFDSMRE--------HDRATIHEAMEQQTISVAKAGLVTTLS 450 (474)
Q Consensus 383 ~~~~l~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEid~~~~--------~~~~~l~~~me~~~~~i~~~g~~~~~~ 450 (474)
..+|.. . .|+|...-..+. ...+.||||||++.+.. +..+.|..++..|
T Consensus 246 l~ag~~---~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-------------- 306 (821)
T CHL00095 246 LLAGTK---Y--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-------------- 306 (821)
T ss_pred HhccCC---C--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--------------
Confidence 111100 0 122222211121 23457999999987632 2344555566544
Q ss_pred CCeEEEEeecCC
Q 011953 451 TRTIIFGATNPK 462 (474)
Q Consensus 451 ~~~~viaatNp~ 462 (474)
.+.+|||||+.
T Consensus 307 -~l~~IgaTt~~ 317 (821)
T CHL00095 307 -ELQCIGATTLD 317 (821)
T ss_pred -CcEEEEeCCHH
Confidence 34688888874
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=9.8e-07 Score=94.28 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=68.0
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCcc-------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGST------- 383 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~~------- 383 (474)
+.+|+|++.+++.+...+-.| +-.+.+||+||+|||||++|+.+++.....-.. ..++.-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 347899999999998877664 112446999999999999999999875421100 000000
Q ss_pred -cCCceEEEEeeC-C--------eeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 -SAGLTVTAVKDG-G--------EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 -~~~l~~~~~~~~-~--------~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
....... ..++ + ......... ..++..|++|||++.|+...+++|+..||+
T Consensus 84 ~g~~~d~~-eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe 145 (576)
T PRK14965 84 EGRSVDVF-EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE 145 (576)
T ss_pred cCCCCCee-eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc
Confidence 0000000 0010 0 000000000 124567999999999999999999999996
No 167
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=4.4e-07 Score=96.60 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=66.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE--E-----EeCCCc---
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV--I-----TTGLGS--- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~--~-----~~~~~~--- 382 (474)
+.+|+|++.+++.|.-.+..+ +-.+-+||+||+|||||++|+.+++.+.-.- - ...++.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 346789999999888877765 1123369999999999999999998764210 0 000000
Q ss_pred -------ccCC---ceEEEEeeCCee--eeecccc--ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -------TSAG---LTVTAVKDGGEW--MLEAGAL--VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -------~~~~---l~~~~~~~~~~~--~~~~g~l--~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.... +.++...+.... ..+.-.. ..+...|++|||+|.|+.+..++|+..||+
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE 150 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE 150 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc
Confidence 0000 111000000000 0000000 112346999999999999999999999885
No 168
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.2e-08 Score=100.87 Aligned_cols=107 Identities=25% Similarity=0.338 Sum_probs=58.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc--eEEEeCCC--cccCCceEEEEeeCCeeeeecccccc---CC--ceEEEEcCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLG--STSAGLTVTAVKDGGEWMLEAGALVL---AD--GGLCCIDEF 418 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~--~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~g~l~~---a~--~gil~iDEi 418 (474)
.++||+||||||||.+||.|.++++. +-++.|.- ....|-+.+.++ ....++..-.+ ++ -.|+++|||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR---~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVR---KLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHH---HHHHhHHHHHHhhCccCCceEEEehhh
Confidence 45999999999999999999998763 33332210 001111111111 11111111111 12 259999999
Q ss_pred CCCChH-------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCC
Q 011953 419 DSMREH-------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPN 468 (474)
Q Consensus 419 d~~~~~-------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~ 468 (474)
|.+... .-+.|+.-|+ +...++ ++.||+-||++..+|.|
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmD----------GVeqLN-NILVIGMTNR~DlIDEA 385 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMD----------GVEQLN-NILVIGMTNRKDLIDEA 385 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcc----------cHHhhh-cEEEEeccCchhhHHHH
Confidence 986332 2233333332 222233 57999999997777655
No 169
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.2e-06 Score=91.65 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=67.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc------cc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS------TS 384 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~------~~ 384 (474)
+.+++||+.+++.+..++-.|. -.+..||+||||+|||++|+++++.....-.. ..++. ..
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-----------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-----------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4578999999999988886651 11335999999999999999999765310000 00000 00
Q ss_pred CCceEEEEe-eC----C--ee--eeecc--ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 385 AGLTVTAVK-DG----G--EW--MLEAG--ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 385 ~~l~~~~~~-~~----~--~~--~~~~g--~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+....... +. + .. ..... .-..+...|++|||++.|+.+.+++|+..||+
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE 143 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE 143 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh
Confidence 000000000 00 0 00 00000 00124567999999999999999999999996
No 170
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8.6e-07 Score=95.08 Aligned_cols=113 Identities=25% Similarity=0.275 Sum_probs=69.1
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE----eCCCcc----
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT----TGLGST---- 383 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~----~~~~~~---- 383 (474)
.+.+++|++.++..+...+..+ +-..++||+||||||||++|+++++........ ..++..
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 3457889999999888777664 112579999999999999999999876532100 011100
Q ss_pred --cCC--ceEEEEeeC---C-----eeeeecc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 --SAG--LTVTAVKDG---G-----EWMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 --~~~--l~~~~~~~~---~-----~~~~~~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+ ......... + +...... .-..+...|++|||++.|+.+.+++|+..||+
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc
Confidence 000 000000000 0 0000000 00123557999999999999999999999995
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.29 E-value=4.6e-07 Score=98.99 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHh
Q 011953 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.++|.+..-..++..|... ...|+||+||||||||.+++.++..
T Consensus 187 ~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 4778777766666555441 2367999999999999999999964
No 172
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.28 E-value=3.9e-06 Score=78.99 Aligned_cols=104 Identities=25% Similarity=0.327 Sum_probs=66.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRAT 428 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~ 428 (474)
.-.+.||+|||||..++.+++.+++.+++..+.....--. + ++ +-.|. ...|..+|+||+++++.+....
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~---l---~r--il~G~--~~~GaW~cfdefnrl~~~vLS~ 103 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQS---L---SR--ILKGL--AQSGAWLCFDEFNRLSEEVLSV 103 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHH---H---HH--HHHHH--HHHT-EEEEETCCCSSHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHH---H---HH--HHHHH--hhcCchhhhhhhhhhhHHHHHH
Confidence 3568999999999999999999999998876655321000 0 00 00111 1246789999999999887665
Q ss_pred H-------HHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 429 I-------HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 429 l-------~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+ +.++..+.-.+...|....++..+.+..|+||.
T Consensus 104 i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~ 144 (231)
T PF12774_consen 104 ISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPG 144 (231)
T ss_dssp HHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-
T ss_pred HHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccc
Confidence 4 445554444455678888888899999999984
No 173
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.28 E-value=1.3e-06 Score=97.59 Aligned_cols=115 Identities=20% Similarity=0.420 Sum_probs=85.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc--CCceEEEE--eeCCeeeeeccccc--cCCceEEEEcCCCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--AGLTVTAV--KDGGEWMLEAGALV--LADGGLCCIDEFDSM 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~--~~l~~~~~--~~~~~~~~~~g~l~--~a~~gil~iDEid~~ 421 (474)
.++||.|.||+|||.|..++|+..+......+..... ..|.++.. ..+|++.+.-.++. +.+||.+++||++-.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 5799999999999999999999999876665433321 11222211 12355555444443 448999999999999
Q ss_pred ChHhHHHHHHHHHh-cEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 422 REHDRATIHEAMEQ-QTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 422 ~~~~~~~l~~~me~-~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+......|...++. +...|.........+.+++|+||-||.
T Consensus 1624 SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq 1665 (4600)
T COG5271 1624 SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQ 1665 (4600)
T ss_pred HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCch
Confidence 99999999999984 556666666777788899999999996
No 174
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.5e-06 Score=88.43 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=66.9
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe---CCCc--------
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT---GLGS-------- 382 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~---~~~~-------- 382 (474)
.+|+|++.++..+.-.+-.| +-...+||+||||+|||++|+.+++......... .++.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~ 85 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEIS 85 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHh
Confidence 47889999999888777654 1124589999999999999999998653210000 0000
Q ss_pred ccCCceEEEEeeCCee---eee--cccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 TSAGLTVTAVKDGGEW---MLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 ~~~~l~~~~~~~~~~~---~~~--~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...........+.... ..+ ...+ ..++..|++|||++.+..+.+++|+..||+
T Consensus 86 ~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 86 SGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE 147 (451)
T ss_pred cCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc
Confidence 0000000000000000 000 0000 124678999999999999999999999986
No 175
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.26 E-value=3.6e-06 Score=84.94 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=67.6
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE--eCCCc-------
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS------- 382 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~--~~~~~------- 382 (474)
.+.+++|++.+++.+...+..| +-...+||+||||+|||++|+.+++........ ..++.
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4457889999999988777665 112458999999999999999999875422000 00000
Q ss_pred -ccCCceEEEEeeC---C--e---eeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -TSAGLTVTAVKDG---G--E---WMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -~~~~l~~~~~~~~---~--~---~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
............. + . ........ ..++..+++|||++.++...++.|+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~ 143 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE 143 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0000000000000 0 0 00000001 124556999999999999889999999875
No 176
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1e-06 Score=94.04 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=68.9
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE-E-----E----eCCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-I-----T----TGLGS 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~-~-----~----~~~~~ 382 (474)
+.+|+||+.++..+.-++..| +-.+.+||+||||||||++|+.+++...-.. . . ..++.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 347889999999888777664 1124599999999999999999998764311 0 0 01110
Q ss_pred c--------cCCceEEEEeeCCeee----ee--cccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 T--------SAGLTVTAVKDGGEWM----LE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 ~--------~~~l~~~~~~~~~~~~----~~--~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
- ...+..... ++.... +. ...+ ..++..|++|||++.|+...+++|+..||+
T Consensus 84 C~sC~~~~~g~~~n~~~~-d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 84 CESCRDFDAGTSLNISEF-DAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred CHHHHHHhccCCCCeEEe-cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 0 001111111 110000 00 0001 234567999999999999999999999996
No 177
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.24 E-value=1.2e-06 Score=88.01 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=54.8
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeec--CC-CCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVD--AS-GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~--~~-~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..+.+.+...|+|++.+|+++..++..+..+.. +. +..+ .+.|+||+||||||||++|+++++..+.+++.+.
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~-~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhcccccccccc-CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 346677778899999999999999987532211 11 1111 2378999999999999999999999887766554
No 178
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.3e-06 Score=91.78 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=67.9
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEE-E--eCCCcc------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-T--TGLGST------ 383 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~-~--~~~~~~------ 383 (474)
+.+|+|++.+++.+...+..| +-.+.+||+||||+|||++|+.+++...-... . ..++..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 347889999999988777664 11244799999999999999999987642110 0 000000
Q ss_pred cCCceEEEE-eeC-Cee-------eee-cc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 SAGLTVTAV-KDG-GEW-------MLE-AG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ~~~l~~~~~-~~~-~~~-------~~~-~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+...... .+. ... ... .. .-..++..|++|||++.|+.+.++.|+..||+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe 146 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE 146 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc
Confidence 000000000 000 000 000 00 00124678999999999999999999999986
No 179
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=4.7e-06 Score=88.46 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=67.7
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCc--------c
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS--------T 383 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~--------~ 383 (474)
.+|+||+.+++.+.-++..| +-.+.+||+||||+|||++|+++++.....-... .++. .
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 37889999999988877664 1124589999999999999999998764211000 0000 0
Q ss_pred cCCceEEEEeeCCe-eee-ec-------c-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 384 SAGLTVTAVKDGGE-WML-EA-------G-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 384 ~~~l~~~~~~~~~~-~~~-~~-------g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...+..... ++.. ... .. . .-..++..|++|||++.|+...+++|+..||+
T Consensus 85 ~~~~dv~~i-dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe 145 (563)
T PRK06647 85 DNSLDVIEI-DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE 145 (563)
T ss_pred CCCCCeEEe-cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc
Confidence 001111101 1000 000 00 0 00124567999999999999999999999985
No 180
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.2e-06 Score=87.18 Aligned_cols=124 Identities=18% Similarity=0.115 Sum_probs=70.7
Q ss_pred cccchHHHHHHHHhhhhCCceeecCCCCceecccc-ceecCCCCcchhHHHHHHHHhcCceEE-EeC-------------
Q 011953 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSVI-TTG------------- 379 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~la~~ia~~~~~~~~-~~~------------- 379 (474)
+++|++.+...+....... + +. .| +||+||||||||++|.++++....... ...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-------~---~~-~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-------G---RL-PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc-------C---CC-CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4566666666666555531 0 11 45 999999999999999999986541110 000
Q ss_pred -CCcccCCceEEEEeeCCeeeeecc------ccc--cCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeC
Q 011953 380 -LGSTSAGLTVTAVKDGGEWMLEAG------ALV--LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (474)
Q Consensus 380 -~~~~~~~l~~~~~~~~~~~~~~~g------~l~--~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~ 450 (474)
.+...-.+..+..+..+....... ... .+..-|++|||+|.|+.+.+++++..||.. +
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------P 137 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------C
Confidence 000000111111111000000000 001 123469999999999999999999999852 3
Q ss_pred CCeEEEEeecCC
Q 011953 451 TRTIIFGATNPK 462 (474)
Q Consensus 451 ~~~~viaatNp~ 462 (474)
.++.+|.+||.+
T Consensus 138 ~~~~~il~~n~~ 149 (325)
T COG0470 138 KNTRFILITNDP 149 (325)
T ss_pred CCeEEEEEcCCh
Confidence 456777778754
No 181
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=2.1e-06 Score=86.02 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=41.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-...++||+.++..+..++-.| |.++.+||+||+|+|||++|+.+++...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 3457899999999999888776 2235599999999999999999997653
No 182
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.5e-06 Score=92.68 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=69.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEE-Ee-C-----CCc---
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TT-G-----LGS--- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~-~~-~-----~~~--- 382 (474)
+.+++|++.+++.+.-.+..| |-.+.+||+||+|+|||++|+.+++...-... .. + ++.
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 347899999999988777665 12356999999999999999999987542110 00 0 000
Q ss_pred -------ccCCceEE-EEeeCC-----eeeeecc-ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 -------TSAGLTVT-AVKDGG-----EWMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 -------~~~~l~~~-~~~~~~-----~~~~~~g-~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...++..- .....+ +...... .-..+...|++|||++.|+....++|+..||+
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 00000000 000000 0000000 00234668999999999999999999999986
No 183
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.7e-07 Score=86.45 Aligned_cols=110 Identities=24% Similarity=0.343 Sum_probs=62.2
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC--CeeeeeccccccC----------Cc
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLA----------DG 410 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~l~~a----------~~ 410 (474)
-+..+.=+||.||||||||+|++++|+-+.-. ..+.... +......... .+|.-+.|.++.. +.
T Consensus 173 lIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~--~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 173 LITWNRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYK--GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeeeeeEEEEeCCCCCChhHHHHHHHHhheee--ecCcccc--ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Confidence 34556779999999999999999999754321 1111111 0000000001 4576666665531 33
Q ss_pred e---EEEEcCCCCCChH---------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCC
Q 011953 411 G---LCCIDEFDSMREH---------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDP 467 (474)
Q Consensus 411 g---il~iDEid~~~~~---------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~ 467 (474)
| .++|||++.+... .-++++.-|++- .+ ..++.++||+|-...+|.
T Consensus 249 ~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl----------K~-~~NvliL~TSNl~~siD~ 312 (423)
T KOG0744|consen 249 GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL----------KR-YPNVLILATSNLTDSIDV 312 (423)
T ss_pred CcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh----------cc-CCCEEEEeccchHHHHHH
Confidence 3 4689999876331 123344444431 11 236899999998665554
No 184
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.5e-06 Score=89.16 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=66.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCce--EEEeCCC---------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLG--------- 381 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~--~~~~~~~--------- 381 (474)
+.+++||+.+...+.-++..+. -.+.+||+||||+|||++|+.+++..... .....++
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-----------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 3468899999998887776641 11336899999999999999999876421 0000000
Q ss_pred -cccCCceEE-EEeeCCe----eee-ecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 382 -STSAGLTVT-AVKDGGE----WML-EAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 382 -~~~~~l~~~-~~~~~~~----~~~-~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
++...+..- .....+. ... ..... ..+...|++|||++.++.+..++|+..|++
T Consensus 84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe 145 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE 145 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc
Confidence 000111100 0000000 000 00000 124567999999999999899999999985
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=6.4e-07 Score=100.19 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=36.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...++|++..-+.++..|... ...|++|+||||||||++++.++...
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR------------TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 345889888777766666552 22678999999999999999999764
No 186
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.15 E-value=2.3e-06 Score=70.72 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=55.2
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChH----
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREH---- 424 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~---- 424 (474)
|.|+||||+|||++++.+++......-... ... ...+.. .+|.. | . ....++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----~~~---vy~~~~~~~~w~--g--Y-~~q~vvi~DD~~~~~~~~~~~ 68 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----KDS---VYTRNPGDKFWD--G--Y-QGQPVVIIDDFGQDNDGYNYS 68 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----CCc---EEeCCCccchhh--c--c-CCCcEEEEeecCccccccchH
Confidence 579999999999999998865543220000 000 000000 11100 0 0 13458999999988754
Q ss_pred hHHHHHHHHHhcEEEEEEcCee---EeeCCCeEEEEeec
Q 011953 425 DRATIHEAMEQQTISVAKAGLV---TTLSTRTIIFGATN 460 (474)
Q Consensus 425 ~~~~l~~~me~~~~~i~~~g~~---~~~~~~~~viaatN 460 (474)
....+..++....+....++.. ...+++ .||+|||
T Consensus 69 ~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~-~vi~tsN 106 (107)
T PF00910_consen 69 DESELIRLISSNPFQPNMADLEDKGTPFNSK-LVIITSN 106 (107)
T ss_pred HHHHHHHHHhcCCcccccccHhhCCCccCCC-EEEEcCC
Confidence 4556677777666655444332 233333 7888888
No 187
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.8e-06 Score=82.96 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=55.4
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCC-C-ceeccccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASG-T-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~-~-~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.+.+...|+||+.+|+++..+|-+...+..... . .--.+.|||++||+|+|||.+||.+|++++.+++-+
T Consensus 7 reIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 7 REIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred HHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 356777788899999999999999976433321111 1 011258999999999999999999999999887654
No 188
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.8e-06 Score=83.86 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=40.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
-..+|+||+.+++.+..++..| |-.+-+||+||+|+||+++|.++++..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred chhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457999999999999888775 112449999999999999999999764
No 189
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.11 E-value=3.4e-06 Score=79.40 Aligned_cols=74 Identities=24% Similarity=0.427 Sum_probs=46.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-cCCceEEEEcCCCCCCh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMRE 423 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~~ 423 (474)
.+++|+||||||||++|+++++.+. ..++...... +.. +. ...+. ....++++|||++.+..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~----~~~--------~~--~~~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE----LAQ--------AD--PEVLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH----HHH--------hH--HHHHhhcccCCEEEEeChhhhcC
Confidence 6799999999999999999997653 2222111110 000 00 00000 12346999999999976
Q ss_pred Hh--HHHHHHHHHh
Q 011953 424 HD--RATIHEAMEQ 435 (474)
Q Consensus 424 ~~--~~~l~~~me~ 435 (474)
.. +..|...++.
T Consensus 105 ~~~~~~~L~~~l~~ 118 (226)
T TIGR03420 105 QPEWQEALFHLYNR 118 (226)
T ss_pred ChHHHHHHHHHHHH
Confidence 44 7788887764
No 190
>PRK06526 transposase; Provisional
Probab=98.10 E-value=3.7e-07 Score=87.31 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=57.8
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCC
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFD 419 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid 419 (474)
.++...|++|+||||||||+||.+++..+- ..+...........+..+. ..+. .....-......+++|||++
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~--~~~~--~~~~l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH--HAGR--LQAELVKLGRYPLLIVDEVG 169 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH--hcCc--HHHHHHHhccCCEEEEcccc
Confidence 344557899999999999999999986542 2221110000000000000 0010 00000112345699999999
Q ss_pred CCC--hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCC
Q 011953 420 SMR--EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHY 465 (474)
Q Consensus 420 ~~~--~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~ 465 (474)
..+ +..+..|++.++.+.- +..+|.|||.+ +.|
T Consensus 170 ~~~~~~~~~~~L~~li~~r~~-------------~~s~IitSn~~~~~w 205 (254)
T PRK06526 170 YIPFEPEAANLFFQLVSSRYE-------------RASLIVTSNKPFGRW 205 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHh-------------cCCEEEEcCCCHHHH
Confidence 874 5556678888875320 11477788765 544
No 191
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.10 E-value=2.9e-06 Score=85.36 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=54.7
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceee-cCCCCc-eeccccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHV-DASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~-~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..+.+.+...|+|++.+|+++..++.++..+. ...+.+ -..+.|+||+||||||||++|+++++..+.+++...
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 45677778889999999999999997642221 111111 011378999999999999999999999887776654
No 192
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.10 E-value=9.9e-06 Score=75.72 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=69.0
Q ss_pred cccchHHHHHHHHhhh---hCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc-eEEEeCCCcccCCceEE
Q 011953 315 QVFGLFTVKLAVALTL---IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTGLGSTSAGLTVT 390 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l---~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-~~~~~~~~~~~~~l~~~ 390 (474)
+++|.+.-|+.+.... +.| .+..|+||+|+.|||||++++++...... .+..+.
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G-----------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIe----------- 85 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQG-----------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIE----------- 85 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcC-----------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEE-----------
Confidence 5678888888776443 333 23478999999999999999999865432 221110
Q ss_pred EEeeCCeeeeeccc---cc-cCCceEEEEcCCCCC-ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 391 AVKDGGEWMLEAGA---LV-LADGGLCCIDEFDSM-REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 391 ~~~~~~~~~~~~g~---l~-~a~~gil~iDEid~~-~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+.. .....-+.. +. ....-|+|+|++.-= .......|..+||.+ ....|.++.+.||+|+
T Consensus 86 -v~k-~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg---------le~~P~NvliyATSNR 150 (249)
T PF05673_consen 86 -VSK-EDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG---------LEARPDNVLIYATSNR 150 (249)
T ss_pred -ECH-HHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc---------cccCCCcEEEEEecch
Confidence 000 000000000 11 224569999998643 334456666677632 2345778999999998
No 193
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.08 E-value=7.3e-06 Score=77.34 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=48.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREH 424 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~ 424 (474)
.+++|+||||||||+||+++++.. +..+......... .. .......++++|||++.++..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~-----------~~------~~~~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL-----------LA------FDFDPEAELYAVDDVERLDDA 105 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH-----------HH------HhhcccCCEEEEeChhhcCch
Confidence 569999999999999999999864 2222221111100 00 011234679999999999888
Q ss_pred hHHHHHHHHHh
Q 011953 425 DRATIHEAMEQ 435 (474)
Q Consensus 425 ~~~~l~~~me~ 435 (474)
.+..|...++.
T Consensus 106 ~~~~L~~~~~~ 116 (227)
T PRK08903 106 QQIALFNLFNR 116 (227)
T ss_pred HHHHHHHHHHH
Confidence 88888888864
No 194
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.04 E-value=6.9e-06 Score=77.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+++|+||||||||+|++++++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999987543
No 195
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=1.6e-05 Score=78.78 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=67.0
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
+.+|+||+.+++.+..++..| +-++-.||+||+|+||+++|+.+++..-.... .....++..-..
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~----~~~h~D~~~~~~ 67 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ----QREYVDIIEFKP 67 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCC----CCCCCCeEEecc
Confidence 357889999999998888665 11234699999999999999999985421000 000001100000
Q ss_pred eeCCeee---ee--cc----ccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 393 KDGGEWM---LE--AG----ALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 393 ~~~~~~~---~~--~g----~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.++.... .+ .. .-..+..-|++||++|.|+.+.+++|+..+|+
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe 119 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE 119 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 0000000 00 00 01124556999999999999999999999996
No 196
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=2.1e-05 Score=84.50 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=68.0
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE---eCCCc------
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT---TGLGS------ 382 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~---~~~~~------ 382 (474)
-+.+|+||+.+++.+..++-.| +-.+.+||+||+|+|||++|+.+++...-.... ..++.
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 3447899999999988887664 112338999999999999999999875311000 00000
Q ss_pred --ccCCceEEEEeeCCee-eeec-------ccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 383 --TSAGLTVTAVKDGGEW-MLEA-------GAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 383 --~~~~l~~~~~~~~~~~-~~~~-------g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.............+.. .... ... ..++..|++|||++.|+.+.+++|+..||+
T Consensus 84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 0000100000000000 0000 000 123567999999999999999999999996
No 197
>PRK06620 hypothetical protein; Validated
Probab=98.00 E-value=1.5e-05 Score=74.36 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++|+||||+|||+|++++++..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 45999999999999999999877653
No 198
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.00 E-value=6.7e-06 Score=82.69 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCCCccchhhhhhcccCcccchHH-HHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHH
Q 011953 288 MQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFT-VKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKF 366 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~~-~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ 366 (474)
+.+.+-.+.+..+.| .+.|+.|+.-+--|.+. .|...+..++. .+..+.|+++.||||||||+++.+
T Consensus 161 ~~~~~~R~~FT~dEW--id~LlrSiG~~P~~~~~r~k~~~L~rl~~----------fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 161 DYYKEGRKEFTLEEW--IDVLIRSIGYEPEGFEARQKLLLLARLLP----------LVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHHHHhhcCHHHH--HHHHHHhcCCCcccCChHHHHHHHHhhHH----------HHhcCCcEEEECCCCCCHHHHHHH
Confidence 344433333333443 47778876655545442 22222222211 234458999999999999999998
Q ss_pred HHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh----HhHHHHHHHHHhcEEEEEE
Q 011953 367 AAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE----HDRATIHEAMEQQTISVAK 442 (474)
Q Consensus 367 ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~----~~~~~l~~~me~~~~~i~~ 442 (474)
++..+- ...|...+.+.|...... ...|. .+.-.+++|||+..++- +....|...|++|.++ +
T Consensus 229 l~~~~a---~~sG~f~T~a~Lf~~L~~------~~lg~--v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fs--R 295 (449)
T TIGR02688 229 LSPYVI---LISGGTITVAKLFYNIST------RQIGL--VGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFT--R 295 (449)
T ss_pred HhHHHH---HHcCCcCcHHHHHHHHHH------HHHhh--hccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCcee--c
Confidence 775410 011111122111110000 01111 23446899999998533 2446788889999987 4
Q ss_pred cCeeEeeCCCeEEEEeec
Q 011953 443 AGLVTTLSTRTIIFGATN 460 (474)
Q Consensus 443 ~g~~~~~~~~~~viaatN 460 (474)
+......++.+.++|-.|
T Consensus 296 G~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 296 GDETKSSDASFVFLGNVP 313 (449)
T ss_pred cceeeeeeeEEEEEcccC
Confidence 444444444455555444
No 199
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=2e-05 Score=77.90 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=40.5
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.+|+||+.++..+..++-.| |-.+..||+||+|+||+.+|.++++..
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999999888775 223679999999999999999998763
No 200
>PRK08116 hypothetical protein; Validated
Probab=97.97 E-value=3.1e-06 Score=81.82 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=56.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEeeCCeeeeecccc-ccCCceEEEEcCC--CCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEF--DSM 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEi--d~~ 421 (474)
.+++|+|+||||||+||.++++.+ +.++...........+..+.... +.. .....+ ...+..+|+|||+ +..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~-~~~-~~~~~~~~l~~~dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSS-GKE-DENEIIRSLVNADLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcc-ccc-cHHHHHHHhcCCCEEEEecccCCCC
Confidence 469999999999999999999764 33332221110000000000000 000 000111 1234569999999 456
Q ss_pred ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 422 REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 422 ~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.+..+..|.+.++.+. .....+|.|||..
T Consensus 193 t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 193 TEWAREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred CHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 7777888888888642 1122478888864
No 201
>PRK06893 DNA replication initiation factor; Validated
Probab=97.96 E-value=6.9e-06 Score=77.64 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=42.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcC----ceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-cCCceEEEEcCCCCCC-
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMR- 422 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~- 422 (474)
.++|+||||||||+|++++++... ...|.... .. . . .....+. ..+..+++|||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~------------~-~-~~~~~~~~~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS------------Q-Y-FSPAVLENLEQQDLVCLDDLQAVIG 105 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh------------h-h-hhHHHHhhcccCCEEEEeChhhhcC
Confidence 479999999999999999997642 22222110 00 0 0 0000011 1234699999999874
Q ss_pred -hHhHHHHHHHHHh
Q 011953 423 -EHDRATIHEAMEQ 435 (474)
Q Consensus 423 -~~~~~~l~~~me~ 435 (474)
...+..++..+..
T Consensus 106 ~~~~~~~l~~l~n~ 119 (229)
T PRK06893 106 NEEWELAIFDLFNR 119 (229)
T ss_pred ChHHHHHHHHHHHH
Confidence 3334566666653
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.95 E-value=1e-05 Score=72.18 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=59.9
Q ss_pred chHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe-CCC----------cccCC
Q 011953 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT-GLG----------STSAG 386 (474)
Q Consensus 318 G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~-~~~----------~~~~~ 386 (474)
||+.+++.+.-.+..+ +-++.+||+||+|+||+++|+++++..--.-... .++ .....
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888888888777664 1124489999999999999999997532111000 000 00011
Q ss_pred ceEEEEeeCCe-eeeecc-------cc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 387 LTVTAVKDGGE-WMLEAG-------AL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 387 l~~~~~~~~~~-~~~~~g-------~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
+. .....+. ...... .+ ..+..-|++|||+|+|+.+.+++|+..||+
T Consensus 70 ~~--~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe 128 (162)
T PF13177_consen 70 FI--IIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE 128 (162)
T ss_dssp EE--EEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS
T ss_pred eE--EEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC
Confidence 11 1111000 000000 00 113456999999999999999999999996
No 203
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.92 E-value=1.2e-05 Score=83.69 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=45.1
Q ss_pred ccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 402 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 402 ~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.|+|..|++|++=+=|+-+.+.+..-.|+.+.+++.+.. .+....++.+..|||.||-+
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~ 306 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNES 306 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHH
Confidence 467777888888666999999988888888888888742 23334567788999999964
No 204
>PRK12377 putative replication protein; Provisional
Probab=97.91 E-value=1.6e-06 Score=82.51 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=56.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeCCeeeeecccc-ccCCceEEEEcCCCC--C
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDS--M 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEid~--~ 421 (474)
.+++|+||||||||+||.+|++.+.. .+...........+..+. +.+. .....+ ......+|+|||+.. .
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~--~~~~--~~~~~l~~l~~~dLLiIDDlg~~~~ 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY--DNGQ--SGEKFLQELCKVDLLVLDEIGIQRE 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHH--hccc--hHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 57999999999999999999976532 222111100000000000 0000 000111 124567999999954 5
Q ss_pred ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 422 REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 422 ~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
++..+..|.++++.+.- .+..+|.|||..
T Consensus 178 s~~~~~~l~~ii~~R~~------------~~~ptiitSNl~ 206 (248)
T PRK12377 178 TKNEQVVLNQIIDRRTA------------SMRSVGMLTNLN 206 (248)
T ss_pred CHHHHHHHHHHHHHHHh------------cCCCEEEEcCCC
Confidence 66678889999987531 123467778853
No 205
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.91 E-value=1.3e-05 Score=81.19 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=36.8
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+-+.+.|.+.-.+.|...+..... | ....+++++||||||||++++++++..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~-----~---~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR-----G---SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 334588998888777766643100 1 112569999999999999999998653
No 206
>PRK08181 transposase; Validated
Probab=97.89 E-value=9.6e-07 Score=85.00 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=55.3
Q ss_pred cccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~ 423 (474)
..|++|+||||||||+||.+++..+ +..++......-...+..+. .+ +. .....-......+|+|||++....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~-~~-~~--~~~~l~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR-RE-LQ--LESAIAKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH-hC-Cc--HHHHHHHHhcCCEEEEeccccccC
Confidence 3679999999999999999998653 22222211100000000000 00 00 000000123456999999988744
Q ss_pred --HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCC
Q 011953 424 --HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHY 465 (474)
Q Consensus 424 --~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~ 465 (474)
..+..|+++++.+. . +..+|.|||.+ +.|
T Consensus 182 ~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w 213 (269)
T PRK08181 182 DQAETSVLFELISARY------------E-RRSILITANQPFGEW 213 (269)
T ss_pred CHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHH
Confidence 44567888887532 0 12577788764 444
No 207
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.86 E-value=1e-05 Score=93.68 Aligned_cols=123 Identities=17% Similarity=0.343 Sum_probs=97.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc--CCceE-EEEeeCCeeeeeccccccC--CceEEEEcCCCCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--AGLTV-TAVKDGGEWMLEAGALVLA--DGGLCCIDEFDSMR 422 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~g~l~~a--~~gil~iDEid~~~ 422 (474)
.++||.||+|+|||.++..+|+..+..+.....+... ..+.. .+..+.|...++-|.++.| +|..+++||++..+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 5799999999999999999999988766665444332 11222 2233346777888888876 67899999999999
Q ss_pred hHhHHHHHHHHHh-cEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCCC
Q 011953 423 EHDRATIHEAMEQ-QTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLC 470 (474)
Q Consensus 423 ~~~~~~l~~~me~-~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~~ 470 (474)
.+..++|...+++ +.+.+.........+.++.+.||-||++.|+..+-
T Consensus 521 ~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~ 569 (1856)
T KOG1808|consen 521 HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKI 569 (1856)
T ss_pred hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhh
Confidence 9999999999997 88888777777777888999999999988865443
No 208
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=5.9e-05 Score=75.28 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred Ccccc-hHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE--EEeCCC---------
Q 011953 314 PQVFG-LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV--ITTGLG--------- 381 (474)
Q Consensus 314 p~i~G-~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~--~~~~~~--------- 381 (474)
..|.| |+.+++.+.-++..| +-++-.||+||+|+||+++|+.+++...-.- -...++
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~ 73 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRID 73 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHh
Confidence 34566 898988888777654 1124469999999999999999997642110 000000
Q ss_pred -cccCCceEEEEeeCCee-eee-----cccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 382 -STSAGLTVTAVKDGGEW-MLE-----AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 382 -~~~~~l~~~~~~~~~~~-~~~-----~g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+.+++.. ....+.. ..+ ...+ ..+...|++|||++.|+.+.+++|+..||+
T Consensus 74 ~~~hpD~~~--i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE 136 (329)
T PRK08058 74 SGNHPDVHL--VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE 136 (329)
T ss_pred cCCCCCEEE--eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC
Confidence 00011111 1000000 000 0000 224556999999999999999999999996
No 209
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.84 E-value=1.7e-05 Score=82.35 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=71.0
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE--E-------------
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV--I------------- 376 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~--~------------- 376 (474)
.+++++|++.+.+.|..++..+ |-.+..||.||-|||||++||.+|+..+-.- .
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 4567899999999999988875 2235689999999999999999998765311 0
Q ss_pred EeCCCcccCCceEEEEeeC---Ceeeeec-cccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 377 TTGLGSTSAGLTVTAVKDG---GEWMLEA-GALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~~---~~~~~~~-g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..|.+...-.+.++...+. ....... -+-+.+...|.+|||++.++....++|+.-+|+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE 145 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE 145 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc
Confidence 0010010011111111100 0000000 011234557999999999999999999988885
No 210
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.84 E-value=3.4e-05 Score=70.55 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 408 ADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 408 a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
+...|++|||++++..+.++.|+..||+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~ 122 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE 122 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC
Confidence 4557999999999999999999999985
No 211
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.79 E-value=9.5e-06 Score=77.74 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=50.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCC-------eeeeecc-ccc--cCCceEEEEcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGG-------EWMLEAG-ALV--LADGGLCCIDE 417 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~g-~l~--~a~~gil~iDE 417 (474)
-|.|++||||||||....+.++.+..+ .+..+....|.++..++.+ .+....+ .+. .+.-..+++||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 389999999999999988888765542 0011101111121111110 0000000 001 12345899999
Q ss_pred CCCCChHhHHHHHHHHHh
Q 011953 418 FDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~ 435 (474)
.|.|..+.|++|++..++
T Consensus 140 ADaMT~~AQnALRRviek 157 (360)
T KOG0990|consen 140 ADAMTRDAQNALRRVIEK 157 (360)
T ss_pred hhHhhHHHHHHHHHHHHH
Confidence 999999999999998875
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=97.76 E-value=2.6e-05 Score=74.98 Aligned_cols=102 Identities=15% Similarity=0.220 Sum_probs=55.6
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEeeCCeeeeeccccc---cCCceEEEEcCC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV---LADGGLCCIDEF 418 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~---~a~~gil~iDEi 418 (474)
....+++|+||||||||+|+.+++..+ +..+...........+..+ ...+. .+... .....+++|||+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a--~~~~~----~~~~~~~~~~~~dlLiiDdl 173 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTA--QRQGR----YKTTLQRGVMAPRLLIIDEI 173 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHH--HHCCc----HHHHHHHHhcCCCEEEEccc
Confidence 334789999999999999999997653 2222221100000000000 00000 00111 234569999999
Q ss_pred CCC--ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCC
Q 011953 419 DSM--REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHY 465 (474)
Q Consensus 419 d~~--~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~ 465 (474)
+.. .......|++.++.+.= +..+|.|+|.+ +.|
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~-------------~~s~iiTsn~~~~~w 210 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYE-------------KGSMILTSNLPFGQW 210 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHh-------------cCcEEEecCCCHHHH
Confidence 975 44455568888875320 11467788875 554
No 213
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.9e-05 Score=85.09 Aligned_cols=127 Identities=23% Similarity=0.287 Sum_probs=72.8
Q ss_pred ccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHh----------cCceEEEeCCCcccC
Q 011953 316 VFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL----------SNRSVITTGLGSTSA 385 (474)
Q Consensus 316 i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~----------~~~~~~~~~~~~~~~ 385 (474)
++|.+.-....+.-|... ...|-+|+|+||+|||.++..+|.- .+..++....++..+
T Consensus 172 vIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 172 VIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred CcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 557666666666555552 2367889999999999999998843 233444443333222
Q ss_pred CceEEEEeeCCeeeeec----cccccCCceEEEEcCCCCCC---------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCC
Q 011953 386 GLTVTAVKDGGEWMLEA----GALVLADGGLCCIDEFDSMR---------EHDRATIHEAMEQQTISVAKAGLVTTLSTR 452 (474)
Q Consensus 386 ~l~~~~~~~~~~~~~~~----g~l~~a~~gil~iDEid~~~---------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~ 452 (474)
|-. .+ |++..+- ..+..+.+-|+||||++.+- -+.-+.|.-++..|.+
T Consensus 240 Gak---yR--GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL-------------- 300 (786)
T COG0542 240 GAK---YR--GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL-------------- 300 (786)
T ss_pred ccc---cc--CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe--------------
Confidence 211 11 2222111 12233457799999999761 2234445566665544
Q ss_pred eEEEEeecCC--C-CC--CCCCCccCC
Q 011953 453 TIIFGATNPK--G-HY--DPNLCITFQ 474 (474)
Q Consensus 453 ~~viaatNp~--~-~~--d~~~~~~~~ 474 (474)
.+||||... . .+ |+|.+-.+|
T Consensus 301 -~~IGATT~~EYRk~iEKD~AL~RRFQ 326 (786)
T COG0542 301 -RCIGATTLDEYRKYIEKDAALERRFQ 326 (786)
T ss_pred -EEEEeccHHHHHHHhhhchHHHhcCc
Confidence 578888753 2 22 666665555
No 214
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.69 E-value=8.8e-05 Score=76.02 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=36.1
Q ss_pred cccC-cccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 311 GICP-QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 311 ~~~p-~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...| .++|.+.....+...+..+.. + ....+++++||||||||++++.+++..
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~-----~---~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR-----G---SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC-----C---CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344 467877776666666533211 0 112569999999999999999998764
No 215
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.68 E-value=4.2e-05 Score=82.75 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=30.8
Q ss_pred eEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 411 GLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 411 gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.||+|||||.+....+..|+..++--.. ...++.|||++|.
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~----------s~SKLiLIGISNd 911 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTK----------INSKLVLIAISNT 911 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhc----------cCCeEEEEEecCc
Confidence 4899999999987777888888873111 1346789999996
No 216
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.67 E-value=0.00036 Score=70.81 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCCccchhhhhhcccCcccchH-HHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHH
Q 011953 287 IMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLF-TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLK 365 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~-~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~ 365 (474)
++.+.+-.+.+..+.| .+.|+.|+.-+=-+.+ ..|..++.-|+=- ...+.|++=.||.|||||.+-+
T Consensus 159 l~~~~~~R~~FT~eEW--iD~LlrS~G~eP~~~~~r~Kl~~L~RLiPl----------VE~N~NliELgPrGTGKS~vy~ 226 (457)
T PF13337_consen 159 LDEYREARKEFTTEEW--IDLLLRSIGYEPSGFSERQKLLLLARLIPL----------VERNYNLIELGPRGTGKSYVYK 226 (457)
T ss_pred HHHHHHHHHhcCHHHH--HHHHHHhcCCCccccCHHHHHHHHHhHHHh----------cccccceEEEcCCCCCceeehh
Confidence 3444444444444444 4778887765554433 3454444444331 3446899999999999999977
Q ss_pred HHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCC---hHhHHHHHHHHHhcEEEEEE
Q 011953 366 FAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR---EHDRATIHEAMEQQTISVAK 442 (474)
Q Consensus 366 ~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~---~~~~~~l~~~me~~~~~i~~ 442 (474)
++++.+...+|--.+.+.|....... ..|.+. ..-++++||+..+. ++....|...|++|.++ +
T Consensus 227 ---eiSp~~~liSGG~~T~A~LFyn~~~~------~~GlV~--~~D~VafDEv~~i~f~d~d~i~imK~YMesG~fs--R 293 (457)
T PF13337_consen 227 ---EISPYGILISGGQVTVAKLFYNMSTG------QIGLVG--RWDVVAFDEVAGIKFKDKDEIQIMKDYMESGSFS--R 293 (457)
T ss_pred ---hcCcccEEEECCCcchHHheeeccCC------cceeee--eccEEEEEeccCcccCChHHHHHHHHHHhcccee--e
Confidence 44566666655444444444322211 122221 23478999999874 55667888999999987 3
Q ss_pred cCeeEeeCCCeEEEEeecCC
Q 011953 443 AGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 443 ~g~~~~~~~~~~viaatNp~ 462 (474)
++. +..+.++++...|..
T Consensus 294 G~~--~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 294 GKE--EINADASMVFVGNIN 311 (457)
T ss_pred ccc--ccccceeEEEEcCcC
Confidence 432 445666777777764
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.64 E-value=4.9e-06 Score=79.67 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=57.1
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-cCCceEEEEcCCCCC-
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSM- 421 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~- 421 (474)
..+++|+||||||||.||-+|+..+- .+++......-...|-.+. ..........- ..+--+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~----~~~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF----DEGRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH----hcCchHHHHHHHhhcCCEEEEecccCcc
Confidence 36799999999999999999996543 2332221111000010000 00000000111 335569999999985
Q ss_pred -ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCC
Q 011953 422 -REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYD 466 (474)
Q Consensus 422 -~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d 466 (474)
.......+++.+.++.-+ + ..+.|+|.+ +.|+
T Consensus 181 ~~~~~~~~~~q~I~~r~~~------------~-~~~~tsN~~~~~~~ 214 (254)
T COG1484 181 FSQEEADLLFQLISRRYES------------R-SLIITSNLSFGEWD 214 (254)
T ss_pred CCHHHHHHHHHHHHHHHhh------------c-cceeecCCChHHHH
Confidence 444567788877764321 2 227888875 5554
No 218
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=5.2e-05 Score=75.34 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=50.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce--EEEeCCC----------cccCCceEEEEeeCCe-eee-e----cccc----
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLG----------STSAGLTVTAVKDGGE-WML-E----AGAL---- 405 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~--~~~~~~~----------~~~~~l~~~~~~~~~~-~~~-~----~g~l---- 405 (474)
+.+||+||+|+||+++|+++|+...-. .-...++ .+.+++..-...+.+. ... . ...+
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 559999999999999999999764310 0000010 0011111100000000 000 0 0001
Q ss_pred ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 406 VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 406 ~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+..-|++|||+|+|+.+..++|+..||+
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE 132 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEE 132 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhC
Confidence 113456999999999999999999999996
No 219
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.61 E-value=0.00013 Score=67.44 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=71.0
Q ss_pred cccchHHHHHHHHhh---hhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCce
Q 011953 315 QVFGLFTVKLAVALT---LIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLT 388 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~---l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~ 388 (474)
++.|.+..|+++... .+.| . +..||||+|.-|||||+|++++...... ..+.+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G--------~---pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV---------- 119 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG--------L---PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEV---------- 119 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC--------C---cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEE----------
Confidence 578999999998743 3343 1 2478999999999999999999865432 11111
Q ss_pred EEEEeeCCeeeeec---ccc-ccCCceEEEEcCCCCC-ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 389 VTAVKDGGEWMLEA---GAL-VLADGGLCCIDEFDSM-REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 389 ~~~~~~~~~~~~~~---g~l-~~a~~gil~iDEid~~-~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.++. ...-| +.+ .....-|+|+|++.-= ..+...+|..+||.+ ...-|.++.+-||+|+
T Consensus 120 ---~k~d--l~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~---------ve~rP~NVl~YATSNR 183 (287)
T COG2607 120 ---DKED--LATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG---------VEGRPANVLFYATSNR 183 (287)
T ss_pred ---cHHH--HhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC---------cccCCCeEEEEEecCC
Confidence 1110 00000 011 1235679999998654 344566777777643 2345778999999998
No 220
>PRK08727 hypothetical protein; Validated
Probab=97.59 E-value=8.5e-05 Score=70.38 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=42.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCc----eEEEeCCCcccCCceEEEEeeCCeeeeecccc-ccCCceEEEEcCCCCCC-
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMR- 422 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEid~~~- 422 (474)
.++|+||+|||||+|+++++..+.. ..|... ..+. ... ...+ ...+..+++|||++.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----~~~~-------~~~---~~~~~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----QAAA-------GRL---RDALEALEGRSLVALDGLESIAG 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----HHhh-------hhH---HHHHHHHhcCCEEEEeCcccccC
Confidence 3999999999999999999765322 222210 0000 000 0011 11233589999999985
Q ss_pred -hHhHHHHHHHHHh
Q 011953 423 -EHDRATIHEAMEQ 435 (474)
Q Consensus 423 -~~~~~~l~~~me~ 435 (474)
+..+..+...+..
T Consensus 108 ~~~~~~~lf~l~n~ 121 (233)
T PRK08727 108 QREDEVALFDFHNR 121 (233)
T ss_pred ChHHHHHHHHHHHH
Confidence 3455667776664
No 221
>PRK09087 hypothetical protein; Validated
Probab=97.58 E-value=8.4e-05 Score=70.01 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=41.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRAT 428 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~ 428 (474)
.++|+||+|+|||+|++++++......+.... +....+.....++++|||++.+.. .+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~-------------------~~~~~~~~~~~~~l~iDDi~~~~~-~~~~ 105 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNE-------------------IGSDAANAAAEGPVLIEDIDAGGF-DETG 105 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHH-------------------cchHHHHhhhcCeEEEECCCCCCC-CHHH
Confidence 49999999999999999998765433221100 001111111236899999998753 4566
Q ss_pred HHHHHH
Q 011953 429 IHEAME 434 (474)
Q Consensus 429 l~~~me 434 (474)
|.+.+.
T Consensus 106 lf~l~n 111 (226)
T PRK09087 106 LFHLIN 111 (226)
T ss_pred HHHHHH
Confidence 666654
No 222
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.55 E-value=5.1e-05 Score=79.93 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=53.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC------CeeeeeccccccCCceEEEEcCCCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDEFDSM 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~g~l~~a~~gil~iDEid~~ 421 (474)
.-+||+||||-|||+||+.||+.+|.++...+.....+ +..++.. .+..+.+ -..+.-|+|||||-.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt---~~~v~~kI~~avq~~s~l~a----dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT---APMVKEKIENAVQNHSVLDA----DSRPVCLVIDEIDGA 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc---HHHHHHHHHHHHhhcccccc----CCCcceEEEecccCC
Confidence 45899999999999999999999998887654333211 1111100 0000100 124567899999999
Q ss_pred ChHhHHHHHHHHH
Q 011953 422 REHDRATIHEAME 434 (474)
Q Consensus 422 ~~~~~~~l~~~me 434 (474)
....-..++..++
T Consensus 400 ~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 400 PRAAVDVILSLVK 412 (877)
T ss_pred cHHHHHHHHHHHH
Confidence 9877778887776
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.55 E-value=2.8e-05 Score=73.86 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=53.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeCCeeeeecccc-ccCCceEEEEcCCCCCCh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMRE 423 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEid~~~~ 423 (474)
.+++|+|+||||||+|+.+|+..+. ..+...........+..... . ..... ...+ ....-.+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~-~-~~~~~-~~~l~~l~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS-N-SETSE-EQLLNDLSNVDLLVIDEIGVQTE 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh-h-ccccH-HHHHHHhccCCEEEEeCCCCCCC
Confidence 4699999999999999999997653 23322211000000000000 0 00000 0000 123456999999988654
Q ss_pred H--hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 424 H--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 424 ~--~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
. ....+++.++.+. ..+..+|.|||-
T Consensus 177 s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl 204 (244)
T PRK07952 177 SRYEKVIINQIVDRRS------------SSKRPTGMLTNS 204 (244)
T ss_pred CHHHHHHHHHHHHHHH------------hCCCCEEEeCCC
Confidence 3 3456788887642 112356777775
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.53 E-value=2.5e-05 Score=77.51 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=47.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCC--C
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM--R 422 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~--~ 422 (474)
.+++|+||||||||+||.+|++.+- ..+...........+..... +.. .......-...+--+|+|||+... .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~~~-~~~~~~~~~l~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-NND-KELEEVYDLLINCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-ccc-hhHHHHHHHhccCCEEEEeccCCCCCC
Confidence 5699999999999999999997642 22222111000000100000 000 000000011224469999999664 5
Q ss_pred hHhHHHHHHHHHhc
Q 011953 423 EHDRATIHEAMEQQ 436 (474)
Q Consensus 423 ~~~~~~l~~~me~~ 436 (474)
+..+..|++.++.+
T Consensus 262 ~~~~~~Lf~iin~R 275 (329)
T PRK06835 262 EFSKSELFNLINKR 275 (329)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677888888764
No 225
>PHA01747 putative ATP-dependent protease
Probab=97.52 E-value=0.00049 Score=67.63 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=83.0
Q ss_pred hhhhhhcccCcccchHH-HHH--HHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCC
Q 011953 305 RNAILRGICPQVFGLFT-VKL--AVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG 381 (474)
Q Consensus 305 ~~~l~~~~~p~i~G~~~-~K~--ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~ 381 (474)
.+.|++|+.-+--+... .|. .++.-|+--++ ++ .+ ..+.|++=.||.|||||++.+.+.+.+|... ++--
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE-~~-~~---~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~ 222 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFT-SP-VS---KRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEP 222 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhhee-cc-CC---CCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCC
Confidence 47777777655544322 222 33333322111 11 11 1458999999999999999999998888766 3322
Q ss_pred cccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCC----hHhHHHHHHHHHhcEEEEEEcCeeE--eeCCCeEE
Q 011953 382 STSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR----EHDRATIHEAMEQQTISVAKAGLVT--TLSTRTII 455 (474)
Q Consensus 382 ~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~----~~~~~~l~~~me~~~~~i~~~g~~~--~~~~~~~v 455 (474)
.+.+.|...... + ..|.+. ..-++++||+..+. .+....|...|++|.++-.+.+... +..+.+++
T Consensus 223 ~TvA~LFyN~~t--~----~~GLVg--~~D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asi 294 (425)
T PHA01747 223 PTYANLVYDAKT--N----ALGLVF--LSNGLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPI 294 (425)
T ss_pred CchHHheEecCC--C----ceeEEe--eccEEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeE
Confidence 232323221111 1 122222 23478999999875 3456667888999998733221122 45667788
Q ss_pred EEeecCC
Q 011953 456 FGATNPK 462 (474)
Q Consensus 456 iaatNp~ 462 (474)
+.+.|+.
T Consensus 295 Vf~GNin 301 (425)
T PHA01747 295 IFAGNPD 301 (425)
T ss_pred EEecCCC
Confidence 8888764
No 226
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.44 E-value=0.00012 Score=61.34 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=45.8
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.|...+...++||..+++.++-++.+-... .. -+.+.-+.|.|+||||||.+++.||+.+
T Consensus 17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~----~~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN----PN-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHcC----CC-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5677788889999999999888877653211 11 1223557799999999999999999764
No 227
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.44 E-value=0.00036 Score=62.49 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=45.8
Q ss_pred cceecCCCCcchhHHHHHHHHhc---Cc---eEEEeCC--CcccCC---------ceEEEEeeC-------Ceeeeecc-
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS---NR---SVITTGL--GSTSAG---------LTVTAVKDG-------GEWMLEAG- 403 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~---~~---~~~~~~~--~~~~~~---------l~~~~~~~~-------~~~~~~~g- 403 (474)
|++|.|+||+|||++++.+.+.+ +. .+++... .....| -........ |.+.....
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 68999999999999999888765 22 3333211 111111 111111110 33332211
Q ss_pred -------cccc--CCceEEEEcCCCCC---ChHhHHHHHHHHHhc
Q 011953 404 -------ALVL--ADGGLCCIDEFDSM---REHDRATIHEAMEQQ 436 (474)
Q Consensus 404 -------~l~~--a~~gil~iDEid~~---~~~~~~~l~~~me~~ 436 (474)
.+.. .+..+++||||..| .+..+.++..+|+..
T Consensus 81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~ 125 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSN 125 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCC
Confidence 1111 25579999999987 666788888888854
No 228
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.00019 Score=65.88 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=49.8
Q ss_pred ccccceecCCCCcchhHHHHHHHHhcCce--------EEEeC-CCcccCCceEEEEeeCCe--eeeec-----cc---cc
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRS--------VITTG-LGSTSAGLTVTAVKDGGE--WMLEA-----GA---LV 406 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~~~~--------~~~~~-~~~~~~~l~~~~~~~~~~--~~~~~-----g~---l~ 406 (474)
+..|.|+.||||||||+++|-+|+..... +-... .+..++++...-..+-+. -.+++ |. +.
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 34789999999999999999999875322 21111 111112111110000010 01111 11 11
Q ss_pred cCCceEEEEcCCCCCChHhHHHHHHHHHhcE
Q 011953 407 LADGGLCCIDEFDSMREHDRATIHEAMEQQT 437 (474)
Q Consensus 407 ~a~~gil~iDEid~~~~~~~~~l~~~me~~~ 437 (474)
...+-|+++|||..... ..+++++++.|.
T Consensus 216 sm~PEViIvDEIGt~~d--~~A~~ta~~~GV 244 (308)
T COG3854 216 SMSPEVIIVDEIGTEED--ALAILTALHAGV 244 (308)
T ss_pred hcCCcEEEEeccccHHH--HHHHHHHHhcCc
Confidence 22567999999997654 567888887653
No 229
>PRK06921 hypothetical protein; Provisional
Probab=97.40 E-value=0.00024 Score=68.56 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+|+||||||+|+.+|++.+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 569999999999999999999764
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.34 E-value=6.8e-05 Score=73.78 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+||||||||.||.++++.+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999775
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=97.33 E-value=0.00022 Score=67.64 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=42.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC----ceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-cCCceEEEEcCCCCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMR 422 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~ 422 (474)
.+++|+||+|||||+|++++++... +..|... ..+... . ...+. .....+++|||++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----~~~~~~-----~-----~~~~~~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----AELLDR-----G-----PELLDNLEQYELVCLDDLDVIA 110 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----HHHHhh-----h-----HHHHHhhhhCCEEEEechhhhc
Confidence 4589999999999999999986432 2222211 001000 0 00000 1123489999999874
Q ss_pred --hHhHHHHHHHHHh
Q 011953 423 --EHDRATIHEAMEQ 435 (474)
Q Consensus 423 --~~~~~~l~~~me~ 435 (474)
+..+..|...+..
T Consensus 111 ~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 111 GKADWEEALFHLFNR 125 (234)
T ss_pred CChHHHHHHHHHHHH
Confidence 3445667777653
No 232
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.31 E-value=0.00017 Score=66.24 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=66.3
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR 426 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~ 426 (474)
+.-++|.|+-|+|||++++.|... .+....... +.. -....+...-++.+||++.+.....
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~----------~~k-----d~~~~l~~~~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF----------DDK-----DFLEQLQGKWIVELDELDGLSKKDV 112 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCccccC----------CCc-----HHHHHHHHhHheeHHHHhhcchhhH
Confidence 356889999999999999998433 222111000 000 0111233446899999999998888
Q ss_pred HHHHHHHHhcEEEEEE--cCeeEeeCCCeEEEEeecCCC
Q 011953 427 ATIHEAMEQQTISVAK--AGLVTTLSTRTIIFGATNPKG 463 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~--~g~~~~~~~~~~viaatNp~~ 463 (474)
+.|..++......+-. +......+.+++++||||...
T Consensus 113 ~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc
Confidence 9999999887776543 223456677799999999753
No 233
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.30 E-value=5.6e-05 Score=64.43 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=19.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...++++||||+|||++++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999765
No 234
>PHA02774 E1; Provisional
Probab=97.24 E-value=0.00084 Score=70.28 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=58.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE-eCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCC-hHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT-TGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR-EHD 425 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~-~~~ 425 (474)
..++|+||||||||+++-+|++.+...++. ++. ...+.+. .+++.-+++|||+..-. .-.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~--------------~s~FwLq----pl~d~ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS--------------KSHFWLQ----PLADAKIALLDDATHPCWDYI 496 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC--------------ccccccc----hhccCCEEEEecCcchHHHHH
Confidence 469999999999999999999987533322 111 1122221 24455699999994331 223
Q ss_pred HHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 426 RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 426 ~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
...|..+++.+.+++.+.-.....-...-+|.|||..
T Consensus 497 d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 497 DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence 4467888887777764322111111123588888863
No 235
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.23 E-value=0.00035 Score=68.82 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=47.3
Q ss_pred ccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 402 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 402 ~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.|.+..|++|++=+-|+-+.+.+..-.|+.+.++|.+... +.....+.+..|||.||+.
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~ 284 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEE 284 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHH
Confidence 4778888889987779999999999999999999988642 2233356778999999985
No 236
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.21 E-value=0.00012 Score=69.80 Aligned_cols=122 Identities=19% Similarity=0.159 Sum_probs=76.8
Q ss_pred hhhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCccc
Q 011953 305 RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS 384 (474)
Q Consensus 305 ~~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~ 384 (474)
++.|-..+...++||..++.-++-++.+-.. ++. -+.+.-+=|.|.|||||+.+++.||+-.-+ .|..+..
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~----n~~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~----~Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWA----NPN-PRKPLVLSFHGWTGTGKNYVAEIIAENLYR----GGLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhc----CCC-CCCCeEEEecCCCCCchhHHHHHHHHHHHh----ccccchh
Confidence 4567778888999999999988888765211 111 123355778999999999999999975432 1111111
Q ss_pred CCceEE-EEeeC----Ceee-----eeccccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 385 AGLTVT-AVKDG----GEWM-----LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 385 ~~l~~~-~~~~~----~~~~-----~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
+....+ .-.-. ..+. ...+.+...+..+.++||.|+|++.....|...++.
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 100000 00000 0000 012333445788999999999999999999999884
No 237
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.18 E-value=8e-05 Score=76.63 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+||||||||+|++++++..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 358999999999999999999764
No 238
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.00032 Score=75.24 Aligned_cols=57 Identities=21% Similarity=0.080 Sum_probs=38.0
Q ss_pred hcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc
Q 011953 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 310 ~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
-.-..++.|++...+.+...+...... .....-++|+||||||||++++.+++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 334457888888776665554432110 011123899999999999999999987664
No 239
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.17 E-value=9.2e-05 Score=74.42 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=24.0
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++.|+|++|+|||+|+-.....++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCc
Confidence 467999999999999999999988764
No 240
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00054 Score=69.06 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce-----EEEeCCCcccCC------ceEEEEeeC--Ceeeee------ccccc-c
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS-----VITTGLGSTSAG------LTVTAVKDG--GEWMLE------AGALV-L 407 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~-----~~~~~~~~~~~~------l~~~~~~~~--~~~~~~------~g~l~-~ 407 (474)
.|++++|+||||||..++.+++..... ....++...... +..+. ... .+|... ...+. .
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~-~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL-GKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc-CCCCCCCCchHHHHHHHHHHHHhc
Confidence 569999999999999999999764322 222222221110 00000 000 000000 00111 1
Q ss_pred CCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 408 ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 408 a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
...-|+.+||+|.+....+..|.+......- ...++.+|+.+|-.
T Consensus 122 ~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~----------~~~~v~vi~i~n~~ 166 (366)
T COG1474 122 GKTVIVILDEVDALVDKDGEVLYSLLRAPGE----------NKVKVSIIAVSNDD 166 (366)
T ss_pred CCeEEEEEcchhhhccccchHHHHHHhhccc----------cceeEEEEEEeccH
Confidence 2345899999999977665667666653211 14567899999863
No 241
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.11 E-value=0.00014 Score=75.94 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+||||||||+|++++++..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999765
No 242
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.10 E-value=0.00046 Score=67.28 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=42.6
Q ss_pred hhhcccCcccchHHHHHH--HHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc
Q 011953 308 ILRGICPQVFGLFTVKLA--VALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 308 l~~~~~p~i~G~~~~K~a--i~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
-+..+...++||..+.+| ++..++.. | + .+...||+.||||||||.||-+|++.++.
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~-------g-k-~aGrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQ-------G-K-MAGRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHh-------C-c-ccccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356677788999999885 45555442 1 1 12266999999999999999999998773
No 243
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.09 E-value=0.0021 Score=67.65 Aligned_cols=29 Identities=38% Similarity=0.400 Sum_probs=24.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-+||.||||||||+.++.+|+..+..+..
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 48899999999999999999988765443
No 244
>PRK04132 replication factor C small subunit; Provisional
Probab=97.09 E-value=0.00034 Score=77.10 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=62.1
Q ss_pred cccceecC--CCCcchhHHHHHHHHhc-----CceEEEeCCCcccCCceEEEEeeC-CeeeeeccccccCCceEEEEcCC
Q 011953 347 ESHLLLVG--DPGTGKSQFLKFAAKLS-----NRSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEF 418 (474)
Q Consensus 347 ~~~iLL~G--~pGtGKs~la~~ia~~~-----~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEi 418 (474)
..|-+..| |.+.|||++|+++|+.. ...++..+... ..+.. .+++. .... ....+..+...|++|||+
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd-~rgid--~IR~iIk~~a-~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD-ERGIN--VIREKVKEFA-RTKPIGGASFKIIFLDEA 639 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC-cccHH--HHHHHHHHHH-hcCCcCCCCCEEEEEECc
Confidence 35677889 99999999999999875 22333332221 11110 01100 0000 000111113369999999
Q ss_pred CCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 419 d~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
|.|+.+.|++|+..||. .+..+.+|.+||++..+
T Consensus 640 D~Lt~~AQnALLk~lEe-------------p~~~~~FILi~N~~~kI 673 (846)
T PRK04132 640 DALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSSKI 673 (846)
T ss_pred ccCCHHHHHHHHHHhhC-------------CCCCeEEEEEeCChhhC
Confidence 99999999999999995 12346788888876444
No 245
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.09 E-value=0.00051 Score=67.91 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=37.5
Q ss_pred hhcccCcccchHHHHHHHH--hhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 309 LRGICPQVFGLFTVKLAVA--LTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~ai~--~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+...+..++||..+++|.- +.++.. .++ ....+||.||||||||.||-++|+.++
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk~--------~K~-aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIKE--------GKI-AGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHHT--------T---TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred EeeccccccChHHHHHHHHHHHHHHhc--------ccc-cCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 4456678999999998654 444431 011 126699999999999999999998876
No 246
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.0011 Score=57.75 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..+.+.|+||+|||+++..++..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 5699999999999999999996543
No 247
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0014 Score=64.74 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.-|++||++|+|+....++|+..||+
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEE 139 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEE 139 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhC
Confidence 45999999999999999999999996
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.03 E-value=0.0005 Score=57.70 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=24.3
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
|++.|+||+|||++|+.+++..+..++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 7899999999999999999987765544
No 249
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.02 E-value=0.0013 Score=69.54 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhcCCCccchhhhhhcccCcccchH-HHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHH
Q 011953 287 IMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLF-TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLK 365 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~p~i~G~~-~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~ 365 (474)
.+.+.+-.+.+..+.| .+.|++|+.-+--+.+ ..|..++.-|+=- ...+-|++=.||.|||||.+-+
T Consensus 167 l~~~~~~R~~FT~dEW--id~LlrSiG~eP~~~~~r~K~~~L~RliPl----------VE~N~Nl~ELgPrgTGKS~~y~ 234 (675)
T TIGR02653 167 MNEVFEGRRHFTSDEW--IDVLLRSVGMEPTNLERRTKWHLLTRLIPL----------VENNYNLCELGPRGTGKSHVYK 234 (675)
T ss_pred HHHHHHHHHhCCHHHH--HHHHHHhcCCCccccCHHHHHHHHHhhhhh----------cccccceEEECCCCCCcceeee
Confidence 3344433333333444 4777776655444433 4555555444432 3346889999999999999988
Q ss_pred HHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCC---ChHhHHHHHHHHHhcEEEEEE
Q 011953 366 FAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM---REHDRATIHEAMEQQTISVAK 442 (474)
Q Consensus 366 ~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~---~~~~~~~l~~~me~~~~~i~~ 442 (474)
+++|.+...+|--.+.+.|....... ..|.+ +..-++++||+..+ .++..+.|...|+.|.++ +
T Consensus 235 ---eiSp~~~liSGG~~T~A~LFyn~~~~------~~GlV--g~~D~VaFDEva~i~f~d~d~v~imK~YM~sG~Fs--R 301 (675)
T TIGR02653 235 ---ECSPNSILMSGGQTTVANLFYNMSTR------QIGLV--GMWDVVAFDEVAGIEFKDKDGVQIMKDYMASGSFA--R 301 (675)
T ss_pred ---ccCCceEEEECCccchhHeeEEcCCC------ceeEE--eeccEEEEeeccccccCCHHHHHHHHHHhhcCccc--c
Confidence 66777777775444444443322111 11221 12347899999885 445566788889999987 4
Q ss_pred cCeeEeeCCCeEEEEeec
Q 011953 443 AGLVTTLSTRTIIFGATN 460 (474)
Q Consensus 443 ~g~~~~~~~~~~viaatN 460 (474)
++......+.+.+++=.|
T Consensus 302 G~~~~~a~as~vfvGNi~ 319 (675)
T TIGR02653 302 GKESIEGKASIVFVGNIN 319 (675)
T ss_pred cccccccceeEEEEcccC
Confidence 443333334445555555
No 250
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.00023 Score=75.42 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.0
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.++|+|++|+|||+|+++|++.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999764
No 251
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.97 E-value=0.0002 Score=74.45 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+++|+|++|+|||+|++++++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~ 164 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNY 164 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999874
No 252
>PF13173 AAA_14: AAA domain
Probab=96.93 E-value=0.00072 Score=57.62 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=44.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC--ceEEEeCCCcccC-CceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN--RSVITTGLGSTSA-GLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREH 424 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~--~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~ 424 (474)
.-++|.||.|+|||++++.+++... ..+.......... .+. ..+-..... ........++||||++.++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~i~iDEiq~~~~- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA---DPDLLEYFL---ELIKPGKKYIFIDEIQYLPD- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh---hhhhHHHHH---HhhccCCcEEEEehhhhhcc-
Confidence 3489999999999999999886543 2222221111100 000 000000000 00112457899999999974
Q ss_pred hHHHHHHHHHhc
Q 011953 425 DRATIHEAMEQQ 436 (474)
Q Consensus 425 ~~~~l~~~me~~ 436 (474)
....+....+.+
T Consensus 76 ~~~~lk~l~d~~ 87 (128)
T PF13173_consen 76 WEDALKFLVDNG 87 (128)
T ss_pred HHHHHHHHHHhc
Confidence 556666666643
No 253
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.90 E-value=0.00072 Score=58.47 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=23.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
++++|+||+|||++++.+++..+..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999988874443
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.0011 Score=65.88 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 409 DGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 409 ~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
...|++||+++.|++..+++++..||+
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEe 139 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEE 139 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHh
Confidence 456999999999999999999999996
No 255
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.83 E-value=0.00025 Score=79.69 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=61.9
Q ss_pred cccceecCCCCcchhHHHHHHHH-hcCceEEEeC---CCcccCCce-----EEEEeeCCeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK-LSNRSVITTG---LGSTSAGLT-----VTAVKDGGEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~-~~~~~~~~~~---~~~~~~~l~-----~~~~~~~~~~~~~~g~l~~a~~gil~iDE 417 (474)
...++++||||+|||+|.--.-+ ..-..+...+ +.++.+-++ .......|...+-|... -..+|+|.||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~--vK~lVLFcDe 1571 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPV--VKDLVLFCDE 1571 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcc--hhheEEEeec
Confidence 46699999999999997543332 2221121111 111111111 01111112222222211 2468999999
Q ss_pred CCC------CChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 418 FDS------MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 418 id~------~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
|+. .++++.-.|..+|+.|.++-..+..+.++. +..+.||+||+
T Consensus 1572 InLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~-~i~l~Gacnp~ 1621 (3164)
T COG5245 1572 INLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTIC-GIILYGACNPG 1621 (3164)
T ss_pred cCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhc-ceEEEccCCCC
Confidence 983 233444457789998777655555555554 67899999995
No 256
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.0017 Score=64.36 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=50.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc--eEEEeCCC----------cccCCceEEEEeeCCeeee-ec----ccc----c
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLG----------STSAGLTVTAVKDGGEWML-EA----GAL----V 406 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~--~~~~~~~~----------~~~~~l~~~~~~~~~~~~~-~~----g~l----~ 406 (474)
+-.||.||+|+||+++|+.+|+..-- +.-...++ .+.+++..-.-.++..... .. ..+ .
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~ 104 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQ 104 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccc
Confidence 56889999999999999999976421 10000111 0111111100000000000 00 000 1
Q ss_pred cCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 407 LADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 407 ~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+...|++||++|+|+....++|+..||+
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEE 133 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEE 133 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcC
Confidence 12345999999999999999999999996
No 257
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.0018 Score=64.50 Aligned_cols=26 Identities=4% Similarity=0.167 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.-|++||++|+|+....++|+..+|+
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEE 158 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEE 158 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcC
Confidence 45999999999999999999999995
No 258
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.80 E-value=0.00029 Score=73.06 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+||||+|||+|++++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Confidence 359999999999999999999753
No 259
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.00098 Score=57.12 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=28.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.-|||+.|-||||||+++.++|...+-..+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 368999999999999999999999887766544
No 260
>PRK13947 shikimate kinase; Provisional
Probab=96.78 E-value=0.0011 Score=59.48 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=27.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
||+|+|+||+|||++++.+++.++.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999998877654
No 261
>PRK14532 adenylate kinase; Provisional
Probab=96.77 E-value=0.0011 Score=60.38 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=27.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
+++|+|+||+|||++++.+++..+...+.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 5899999999999999999998887666653
No 262
>PRK08118 topology modulation protein; Reviewed
Probab=96.74 E-value=0.001 Score=59.53 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+++|+||+|||++|+.+++..+.+++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~l 32 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceec
Confidence 389999999999999999999887765544
No 263
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.74 E-value=0.00045 Score=71.59 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+||||+|||+|++++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999754
No 264
>PRK04296 thymidine kinase; Provisional
Probab=96.72 E-value=0.0049 Score=56.42 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=17.1
Q ss_pred ceecCCCCcchhHHHHHHHHh
Q 011953 350 LLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+++||||+|||+++..++..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 688999999999877666643
No 265
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.0021 Score=64.13 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=50.8
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc--e--EEEeCC--------CcccCCceEEEEeeCCeeeeec-------ccc--
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR--S--VITTGL--------GSTSAGLTVTAVKDGGEWMLEA-------GAL-- 405 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~--~--~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~-------g~l-- 405 (474)
.+-+||.||+|+||+++|+++|+..-- + ....|. ..+.+++..-. .+.+...+.. ..+
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-PEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-cccccccCCHHHHHHHHHHHhh
Confidence 356889999999999999999976421 1 000110 00111111100 0000000000 001
Q ss_pred --ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 406 --VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 406 --~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+...|++||++|+|+....++|+..||+
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDAAANALLKTLEE 134 (334)
T ss_pred ccccCCceEEEEcchHhhCHHHHHHHHHHhcC
Confidence 113446999999999999999999999996
No 266
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.68 E-value=0.0015 Score=61.55 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=28.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..|+|+||||+|||++++.+++..+...+.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 55999999999999999999999887777655
No 267
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0026 Score=62.80 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=50.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEE-eCCC----------cccCCceEEEEeeCCeee----eec--ccc----
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT-TGLG----------STSAGLTVTAVKDGGEWM----LEA--GAL---- 405 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~-~~~~----------~~~~~l~~~~~~~~~~~~----~~~--g~l---- 405 (474)
.+-+||.||.|+||+.+|+++++..--.-.. ..++ .+.+++..-.-...+... .+. ..+
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 3569999999999999999999764210000 0010 011111110000001000 000 000
Q ss_pred ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 406 VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 406 ~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+..-|++||++|+|+....++|+..+|+
T Consensus 105 ~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNESASNALLKTLEE 134 (319)
T ss_pred ccCCceEEEecchhhhCHHHHHHHHHHhcC
Confidence 112345999999999999999999999996
No 268
>PRK03839 putative kinase; Provisional
Probab=96.67 E-value=0.0013 Score=59.54 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.|+|+|+||+|||++++.+++..+.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999887776543
No 269
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.67 E-value=0.0071 Score=57.29 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=31.8
Q ss_pred eEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCC
Q 011953 411 GLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG 463 (474)
Q Consensus 411 gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~ 463 (474)
.+++|.|.|++..+.|.+|..-||.- ...|++|..+|...
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S 168 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS 168 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc
Confidence 58999999999999999999999952 23456777777643
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.67 E-value=0.0014 Score=58.61 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=27.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|+|+||+|||++++.+++.++..++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5699999999999999999999988766643
No 271
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.65 E-value=0.00092 Score=60.50 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCC--
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM-- 421 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~-- 421 (474)
..|++|+||||||||+||.++++.+ +..+.......-...+..+ ...+....... ...+-.+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--~~~~~~~~~~~--~l~~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--RSDGSYEELLK--RLKRVDLLILDDLGYEPL 122 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--HCCTTHCHHHH--HHHTSSCEEEETCTSS--
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--ccccchhhhcC--ccccccEecccccceeee
Confidence 4679999999999999999998643 2222221110000001100 00010000000 1235579999999875
Q ss_pred ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 422 REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 422 ~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+......|++.++.+. ..+ .+|.|||..
T Consensus 123 ~~~~~~~l~~ii~~R~------------~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 123 SEWEAELLFEIIDERY------------ERK-PTIITSNLS 150 (178)
T ss_dssp -HHHHHCTHHHHHHHH------------HT--EEEEEESS-
T ss_pred cccccccchhhhhHhh------------ccc-CeEeeCCCc
Confidence 4445666788887642 112 466699874
No 272
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.65 E-value=0.0015 Score=57.25 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.3
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+|+|+|+||+|||++++.+++..+..++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 489999999999999999998888776654
No 273
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.64 E-value=0.0019 Score=62.30 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.++|+||+|+|||++++.+++...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999998765
No 274
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00038 Score=73.28 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.3
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..||||.||+|+|||.|++++++....
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k 457 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK 457 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc
Confidence 478999999999999999999987654
No 275
>PHA00729 NTP-binding motif containing protein
Probab=96.61 E-value=0.0012 Score=61.64 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+++++|+||||||+||.++++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998754
No 276
>PHA02624 large T antigen; Provisional
Probab=96.60 E-value=0.0046 Score=65.17 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=54.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh----
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE---- 423 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~---- 423 (474)
.-++|+||||||||+++.++.+.++-....++...+. ..+.+ -.+++.-+.+||++..-.-
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k-----------s~FwL----~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK-----------LNFEL----GCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch-----------hHHHh----hhhhhceEEEeeecccccccccc
Confidence 5699999999999999999999985434333211100 11111 1345667888888753211
Q ss_pred ---H----hHHHHHHHHHhc-EEEEEEcC---eeEeeCCCeEEEEeecC
Q 011953 424 ---H----DRATIHEAMEQQ-TISVAKAG---LVTTLSTRTIIFGATNP 461 (474)
Q Consensus 424 ---~----~~~~l~~~me~~-~~~i~~~g---~~~~~~~~~~viaatNp 461 (474)
. -...|+.+++.. .+++.+.- .....| -.|.|||-
T Consensus 497 Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P---PlliT~Ne 542 (647)
T PHA02624 497 LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP---PGIVTMNE 542 (647)
T ss_pred CCcccccchhhHHHhhcCCCCccccchhccCchhccCC---CeEEeecC
Confidence 1 124667777654 45443211 111222 36778885
No 277
>PRK00625 shikimate kinase; Provisional
Probab=96.58 E-value=0.0016 Score=58.54 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=27.3
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
+|+|+|.||+|||++++.+++.++.+++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999887776553
No 278
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00094 Score=68.23 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=53.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCC-----
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSM----- 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~----- 421 (474)
..+||.||||+|||.||-.+|..+.-+++-.-......|++.+.--.. .... ....++.-.++++|+|+++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F---~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIF---EDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHH---HHhhcCcceEEEEcchhhhhcccc
Confidence 569999999999999999999999888776533333344443211000 0000 0112334569999999875
Q ss_pred -ChHhHHHHHHHHH
Q 011953 422 -REHDRATIHEAME 434 (474)
Q Consensus 422 -~~~~~~~l~~~me 434 (474)
.|...+.+++++-
T Consensus 616 IGPRfSN~vlQaL~ 629 (744)
T KOG0741|consen 616 IGPRFSNLVLQALL 629 (744)
T ss_pred cCchhhHHHHHHHH
Confidence 5566666666653
No 279
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.56 E-value=0.002 Score=58.39 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=25.0
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|+++|+||+|||++++.+++..+...+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999887655554
No 280
>PRK14530 adenylate kinase; Provisional
Probab=96.54 E-value=0.002 Score=60.21 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=26.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.+|+|+|+||+|||++++.+++..+...+.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3599999999999999999999988766644
No 281
>PRK07261 topology modulation protein; Provisional
Probab=96.50 E-value=0.0022 Score=57.59 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=24.5
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|+++|+||+|||+||+.+++..+.+.+..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 89999999999999999998876555443
No 282
>PRK13949 shikimate kinase; Provisional
Probab=96.45 E-value=0.0022 Score=57.51 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=26.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+|+|+|+||+|||++++.+++.++..++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 599999999999999999999988766654
No 283
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0022 Score=57.95 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=25.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|++.|+||+|||++|+.+++..+-+-+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcH
Confidence 489999999999999999999877655543
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.39 E-value=0.0036 Score=56.50 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 316 VFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 316 i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
++|.+...+.+.-.+-... -....+++++|++|+|||++++.+....
T Consensus 2 fvgR~~e~~~l~~~l~~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTS---------S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666666665552110 0112679999999999999999877543
No 285
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.38 E-value=0.003 Score=57.69 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=25.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|+++|+||+|||++++.+++..+...+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999877666554
No 286
>PRK14531 adenylate kinase; Provisional
Probab=96.37 E-value=0.0028 Score=57.56 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+++|+||+|||++++.+++..+...+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 499999999999999999999887666554
No 287
>PF13245 AAA_19: Part of AAA domain
Probab=96.36 E-value=0.0039 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=17.2
Q ss_pred ceecCCCCcchh-HHHHHHHHhc
Q 011953 350 LLLVGDPGTGKS-QFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs-~la~~ia~~~ 371 (474)
+++.|||||||| ++++.++.+.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 556999999999 5667776665
No 288
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0075 Score=64.48 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=33.6
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCc
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS 382 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~ 382 (474)
+....-+||.|+||||||++++++|..++..++...+.+
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~e 466 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYE 466 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHH
Confidence 344567999999999999999999999999999876654
No 289
>PRK06217 hypothetical protein; Validated
Probab=96.33 E-value=0.0032 Score=57.19 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=26.3
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+|+|.||+|||++++.+++.++.+++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 499999999999999999999988766554
No 290
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.32 E-value=0.0032 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
++|+||||+|||++++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999998876554
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.32 E-value=0.0059 Score=56.19 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=45.0
Q ss_pred cceecCCCCcchhHHHHHHHHhc---CceEEEeCCCccc-------CCceEEEEeeC-Ceeee--eccccccCCceEEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDG-GEWML--EAGALVLADGGLCCI 415 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~-------~~l~~~~~~~~-~~~~~--~~g~l~~a~~gil~i 415 (474)
-.++.|+||||||++++.+.+.. +..++.......+ .+..+.-+..- ..... ..+........+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 37788999999999999887543 3333333211111 01111111000 00000 000001334469999
Q ss_pred cCCCCCChHhHHHHHHHHHh
Q 011953 416 DEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 416 DEid~~~~~~~~~l~~~me~ 435 (474)
||...++......|+.....
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999999888788877764
No 292
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.25 E-value=0.012 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.3
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+++.||+|+|||++++++....+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999998876654
No 293
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.25 E-value=0.0036 Score=54.73 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
++|.|+||+|||++|+.+++..+...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999998766554
No 294
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.0072 Score=58.67 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=49.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCC----CcccCCceEEEEeeCCe-eeee-c----ccc----ccCCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL----GSTSAGLTVTAVKDGGE-WMLE-A----GAL----VLADGGLC 413 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~-~~~~-~----g~l----~~a~~gil 413 (474)
+-.||+||+|+||+.+|.++++..--.-....+ ....+++..-.-.+.+. ...+ . ..+ ..+...|+
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ 99 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIY 99 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceEE
Confidence 568899999999999999999754210000000 01111111100000000 0000 0 001 11234699
Q ss_pred EEcCCCCCChHhHHHHHHHHHh
Q 011953 414 CIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 414 ~iDEid~~~~~~~~~l~~~me~ 435 (474)
+||++|+|+.+.+++|+..||+
T Consensus 100 ii~~ad~mt~~AaNaLLK~LEE 121 (290)
T PRK05917 100 IIHEADRMTLDAISAFLKVLED 121 (290)
T ss_pred EEechhhcCHHHHHHHHHHhhc
Confidence 9999999999999999999995
No 295
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.22 E-value=0.0012 Score=65.51 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=55.0
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeC-CCcccC---------CceEEE----EeeCCeeeeeccccc----cC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG-LGSTSA---------GLTVTA----VKDGGEWMLEAGALV----LA 408 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~-~~~~~~---------~l~~~~----~~~~~~~~~~~g~l~----~a 408 (474)
+.++.|+|.-|||||+|.-......+. ...-. .+-... .+-... ......|.+++-+.+ ..
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa~ 192 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIAE 192 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHhh
Confidence 466999999999999999887755443 11000 000000 000000 000111444433222 22
Q ss_pred CceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 409 ~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+..+||+|||.--.-.+.-.|...|+.- +...++++||+|+.
T Consensus 193 ea~lLCFDEfQVTDVADAmiL~rLf~~L------------f~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 193 EAILLCFDEFQVTDVADAMILKRLFEHL------------FKNGVVLVATSNRA 234 (467)
T ss_pred hceeeeechhhhhhHHHHHHHHHHHHHH------------HhCCeEEEEeCCCC
Confidence 4579999999876555555555565531 11245789999983
No 296
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.20 E-value=0.012 Score=55.41 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.2
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4678999999999999988773
No 297
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.20 E-value=0.0026 Score=64.16 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=49.0
Q ss_pred cceecCCCCcchhHHHHHHHHhc------CceEEEeCCCcccCC----ceEEEEeeC-Ceeeeeccccc---------cC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS------NRSVITTGLGSTSAG----LTVTAVKDG-GEWMLEAGALV---------LA 408 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~------~~~~~~~~~~~~~~~----l~~~~~~~~-~~~~~~~g~l~---------~a 408 (474)
-+++.|.||||||.||-.+++.+ ....+.+........ +........ ......+..+. ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 37899999999999999988766 223444433222111 111110000 11111122121 12
Q ss_pred CceEEEEcCCCCCChH--------hHHHHHHHHHhcEE
Q 011953 409 DGGLCCIDEFDSMREH--------DRATIHEAMEQQTI 438 (474)
Q Consensus 409 ~~gil~iDEid~~~~~--------~~~~l~~~me~~~~ 438 (474)
.-.++++||.+.+... ..+.|.+.|....+
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv 120 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKV 120 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCE
Confidence 3479999999999772 23567777775433
No 298
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.20 E-value=0.0028 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
|+|.|+||+|||++|+.+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999876
No 299
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.18 E-value=0.0046 Score=55.63 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.+|+|+|++|+|||++++.+++..+..++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 46999999999999999999998887766543
No 300
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.14 E-value=0.0035 Score=56.52 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
-++|.|+||+|||++++.+++.++..++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 4899999999999999999988766544
No 301
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.13 E-value=0.0038 Score=55.48 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=28.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.+|.|+|++|+|||++.+++|+.++.+++-+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 5699999999999999999999998887754
No 302
>PRK14528 adenylate kinase; Provisional
Probab=96.13 E-value=0.0044 Score=56.50 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
++++.||||+|||++++.+++..+...+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999998877666554
No 303
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.11 E-value=0.0041 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.2
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999875
No 304
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0076 Score=53.25 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.2
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
.|++.|.||||||++++.++ ..+...+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCcee
Confidence 38899999999999999999 5554444
No 305
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.07 E-value=0.0039 Score=56.59 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.2
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
++++|+||+|||++++.+++..+...+..
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999998776554443
No 306
>PLN02200 adenylate kinase family protein
Probab=96.07 E-value=0.0063 Score=57.61 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=27.1
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+..+++.|+||+|||++++.+++..+...+..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 35689999999999999999999887665554
No 307
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.06 E-value=0.0048 Score=57.41 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=25.3
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|+++|+||+|||++++.+++..+...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999998877666654
No 308
>PRK06762 hypothetical protein; Provisional
Probab=96.05 E-value=0.0053 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.7
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
++|+|+||+|||++|+.+++..+...
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l~~~~ 30 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGT 30 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 78999999999999999998875433
No 309
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.03 E-value=0.0051 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|.+.|+||+|||++|+.+++..+.+++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 67899999999999999999888776654
No 310
>PRK14526 adenylate kinase; Provisional
Probab=96.03 E-value=0.0053 Score=57.14 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=25.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
+++|+|+||+|||++++.+++..+...+.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G 32 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTG 32 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecC
Confidence 4889999999999999999987766555443
No 311
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.01 E-value=0.0094 Score=60.39 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=49.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCccc-----CCceEEEEeeC----Cee-eee-----ccccccCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTS-----AGLTVTAVKDG----GEW-MLE-----AGALVLAD 409 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~-----~~l~~~~~~~~----~~~-~~~-----~g~l~~a~ 409 (474)
.++.+.|+.|||||.+++++...... .+..+...+.+ .|.|......- ... ... .-.-...+
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~ 102 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRK 102 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhh
Confidence 67999999999999999999876533 33333222111 12211101000 000 000 00011223
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHH
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAME 434 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me 434 (474)
-.+++|||+..++......+...|.
T Consensus 103 ~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 103 ADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred heeeecccccchhHHHHHHHHHhhh
Confidence 4699999999999887777766655
No 312
>PRK13946 shikimate kinase; Provisional
Probab=95.97 E-value=0.0058 Score=55.58 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=28.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..+|+|+|.||+|||++++.+++.++.+++...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 367999999999999999999999888776543
No 313
>PRK02496 adk adenylate kinase; Provisional
Probab=95.96 E-value=0.005 Score=55.90 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.++++|+||+|||++++.+++..+...+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999998877655543
No 314
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.96 E-value=0.0061 Score=55.53 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..+.|+||+|+|||+|++.++...+..+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 358999999999999999999887655444
No 315
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0061 Score=53.17 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=26.6
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
|-+.|+||||||++++.+|+..+.+++..|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG 32 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAG 32 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeecc
Confidence 567899999999999999999998888754
No 316
>PRK13948 shikimate kinase; Provisional
Probab=95.94 E-value=0.0071 Score=54.89 Aligned_cols=33 Identities=27% Similarity=0.168 Sum_probs=28.8
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..+|+|+|.+|+|||++++.+++.++..++...
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 367999999999999999999998888777543
No 317
>PLN02459 probable adenylate kinase
Probab=95.89 E-value=0.008 Score=57.39 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=27.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.+++|+||||+|||++++.+++..+...+.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~g 61 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATG 61 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCc
Confidence 56899999999999999999998876666543
No 318
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.89 E-value=0.013 Score=58.32 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=57.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhH-
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR- 426 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~- 426 (474)
.=++++|||+||||+++-.+.+.+.-.+++..... .++.+. .+++..|.+||++....=+-.
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~-------------ShFWLq----PL~d~Ki~llDDAT~~cW~Y~D 325 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK-------------SHFWLQ----PLADAKIALLDDATYPCWDYID 325 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT-------------SCGGGG----GGCT-SSEEEEEE-HHHHHHHH
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC-------------Cccccc----chhcCcEEEEcCCcccHHHHHH
Confidence 34899999999999999999888776665432111 223232 366777889999765332222
Q ss_pred HHHHHHHHhcEEEEEEcC---eeEeeCCCeEEEEeecC
Q 011953 427 ATIHEAMEQQTISVAKAG---LVTTLSTRTIIFGATNP 461 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~~g---~~~~~~~~~~viaatNp 461 (474)
..|+.+++...+++...- .....| -+|.|||-
T Consensus 326 ~ylRNaLDGN~vsiD~KHkap~Qik~P---PLlITsN~ 360 (432)
T PF00519_consen 326 TYLRNALDGNPVSIDCKHKAPVQIKCP---PLLITSNI 360 (432)
T ss_dssp HHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS
T ss_pred HHHHhccCCCeeeeeccCCCceEeecC---ceEEecCC
Confidence 347788888888875322 223333 46778875
No 319
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.87 E-value=0.0072 Score=54.09 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=26.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+++|+|.||+|||++++.+++.++.+++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 589999999999999999999888877754
No 320
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.84 E-value=0.0073 Score=56.37 Aligned_cols=30 Identities=43% Similarity=0.664 Sum_probs=26.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
|+++|+||+|||++++.+++..+...+.++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~~ 32 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTG 32 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 899999999999999999998887666643
No 321
>PLN02674 adenylate kinase
Probab=95.80 E-value=0.0073 Score=57.29 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.+++|.||||+||+++++.+++..+...+.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~G 63 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATG 63 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchh
Confidence 56999999999999999999998876665543
No 322
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=95.77 E-value=0.0093 Score=56.87 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=40.7
Q ss_pred hhhcccCcccchHHHHHH--HHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc
Q 011953 308 ILRGICPQVFGLFTVKLA--VALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 308 l~~~~~p~i~G~~~~K~a--i~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.+...+..++|++.+++| ++.-++.. + .-....+||-||||||||.||-+|++.++.
T Consensus 32 ~~~~~~~g~vGQ~~AReAagiivdlik~-K--------kmaGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 32 NAVEVAAGFVGQENAREAAGIIVDLIKS-K--------KMAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred CeeecccccccchhhhhhhhHHHHHHHh-h--------hccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 355667788999999875 44444432 1 011255999999999999999999987653
No 323
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.76 E-value=0.0051 Score=55.58 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=46.1
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeC-----Cee-eeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG-----GEW-MLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~-----~~~-~~~~g~l~~a~~gil~iDE 417 (474)
..-+.|+||.|+|||+|++.++.+.+. .+...+ ......... |+. ..........++.++++||
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-------ITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-------EEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 355889999999999999999987542 111111 001111110 100 0001112234788999999
Q ss_pred CCC-CChHhHHHHHHHHH
Q 011953 418 FDS-MREHDRATIHEAME 434 (474)
Q Consensus 418 id~-~~~~~~~~l~~~me 434 (474)
-.. +....+..+.+.+.
T Consensus 98 Pts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 98 PSAYLDIEQRLNAARAIR 115 (177)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 865 66666666666554
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.74 E-value=0.0087 Score=52.67 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=24.4
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.++..--+++.||+|+|||+|++.++.+-+
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 334446699999999999999999997643
No 325
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.74 E-value=0.022 Score=61.09 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..+++|||+..++......|++++..
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCC
Confidence 35999999999999888888888764
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.72 E-value=0.0066 Score=52.88 Aligned_cols=85 Identities=26% Similarity=0.329 Sum_probs=49.9
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEee-C-Ceee-eeccccccCCceEEEEcCC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKD-G-GEWM-LEAGALVLADGGLCCIDEF 418 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~-~-~~~~-~~~g~l~~a~~gil~iDEi 418 (474)
.....+.+.||+|+|||+|++.++.+.+. .++..+. ....+... + |+.. ..-......++.++++||-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33466899999999999999999987643 1111110 01111110 0 1000 0001112237789999997
Q ss_pred CC-CChHhHHHHHHHHHh
Q 011953 419 DS-MREHDRATIHEAMEQ 435 (474)
Q Consensus 419 d~-~~~~~~~~l~~~me~ 435 (474)
.. +..+.+..+.+.+.+
T Consensus 98 ~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 98 TNHLDLESIEALEEALKE 115 (144)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 64 777788888888874
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.68 E-value=0.014 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++|.|+.|+|||+++|.+++.++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45999999999999999999998764
No 328
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.0026 Score=58.18 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.++||+|+|||+|+|++..+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 458999999999999999999764
No 329
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.62 E-value=0.0071 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.4
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+++++|+||+|||+++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
No 330
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.60 E-value=0.005 Score=57.45 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.6
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
+..+|++|+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999875
No 331
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.60 E-value=0.011 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcCce
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
+.|+||+|+|||+|++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999886543
No 332
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.56 E-value=0.015 Score=64.26 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=47.7
Q ss_pred cceecCCCCcchhHHHHHHHHhc---CceEEEeCCCccc-------CCceEEEEeeCCeee--eeccccccCCceEEEEc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDGGEWM--LEAGALVLADGGLCCID 416 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~--~~~g~l~~a~~gil~iD 416 (474)
-++|.|+||||||++++++.... +..+........+ .|..+.-+ ..+. +..+.-......+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti---~~~~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTL---ASLEYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeH---HHHHhhhccCcccCCCCcEEEEE
Confidence 37899999999999999987653 3333332211111 11111000 0110 11122223456799999
Q ss_pred CCCCCChHhHHHHHHHHH
Q 011953 417 EFDSMREHDRATIHEAME 434 (474)
Q Consensus 417 Eid~~~~~~~~~l~~~me 434 (474)
|+..++......|+....
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999887777776544
No 333
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.012 Score=51.80 Aligned_cols=91 Identities=24% Similarity=0.365 Sum_probs=49.8
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcCce---EEEeCCCcccC---Cc--eEEEEe--eCCeee-eeccccccCCceEE
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLGSTSA---GL--TVTAVK--DGGEWM-LEAGALVLADGGLC 413 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~~~---~~~~~~~~~~~---~l--~~~~~~--~~~~~~-~~~g~l~~a~~gil 413 (474)
.....+.|+|++|+|||+|++.++...+.. ++..+...... .. ...... .+|+.. .........++.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 334668999999999999999999875431 11111100000 00 000000 001100 00111122367899
Q ss_pred EEcCCCC-CChHhHHHHHHHHHh
Q 011953 414 CIDEFDS-MREHDRATIHEAMEQ 435 (474)
Q Consensus 414 ~iDEid~-~~~~~~~~l~~~me~ 435 (474)
++||... ++...+..+.+.+.+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999875 677777788777764
No 334
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.53 E-value=0.015 Score=64.03 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=47.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcC-----ceEEEeCCCccc-------CCceEEEEeeCCeee-eecccc------ccCC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTS-------AGLTVTAVKDGGEWM-LEAGAL------VLAD 409 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~-----~~~~~~~~~~~~-------~~l~~~~~~~~~~~~-~~~g~l------~~a~ 409 (474)
.++|.|+||||||++++++.+... ..++.......+ .|..+.-. ..+. ..++.. ....
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Ti---h~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTI---HRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccH---HHHhhccCCccchhhhhcccc
Confidence 489999999999999999876543 233332211111 01100000 0000 001100 0124
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
..++++||+..++......|+.++..
T Consensus 417 ~~llIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 417 CDLLIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred CCEEEEeccccCCHHHHHHHHHhCCC
Confidence 56999999999998877777776643
No 335
>PRK14527 adenylate kinase; Provisional
Probab=95.51 E-value=0.008 Score=55.00 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=23.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
.-++++||||+|||++++.+++..+...+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 34999999999999999999977655433
No 336
>PRK14529 adenylate kinase; Provisional
Probab=95.51 E-value=0.0085 Score=56.11 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
+|+|.||||+|||++++.+++..+...+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 48999999999999999999887765543
No 337
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.50 E-value=0.013 Score=54.74 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=14.6
Q ss_pred ceecCCCCcchhHHHHHHHH
Q 011953 350 LLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~ 369 (474)
.++.||||||||+++..+..
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 88999999999975544443
No 338
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.50 E-value=0.039 Score=54.46 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=61.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~ 427 (474)
.=++|+|+.|+|||++++.+..+.+........... +.. .+++. .....+...-+++.||++.-.....+
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~---~~~---~~~~~----f~~a~l~gk~l~~~~E~~~~~~~~~~ 146 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLK---MNE---FQEHR----FGLARLEGKRAVIGDEVQKGYRDDES 146 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchh---hhh---ccCCC----chhhhhcCCEEEEecCCCCCccccHH
Confidence 448999999999999999999998864321100000 100 01011 11112344568899999754333345
Q ss_pred HHHHHHHhcEEEEEEcC-eeEeeCCCeEEEEeecCC
Q 011953 428 TIHEAMEQQTISVAKAG-LVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 428 ~l~~~me~~~~~i~~~g-~~~~~~~~~~viaatNp~ 462 (474)
.+..+.....+++...+ ...+....+.+|.+||..
T Consensus 147 ~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~ 182 (304)
T TIGR01613 147 TFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHL 182 (304)
T ss_pred hhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCC
Confidence 56666655666654333 233444567788888864
No 339
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.47 E-value=0.0095 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
++++||||+|||+++++++...+
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998754
No 340
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.027 Score=60.62 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=74.7
Q ss_pred ccceecC----CCCcchhHHHHHHHHhcC--------------------ceEEEeCCCcccCCceEEEEeeC--C-----
Q 011953 348 SHLLLVG----DPGTGKSQFLKFAAKLSN--------------------RSVITTGLGSTSAGLTVTAVKDG--G----- 396 (474)
Q Consensus 348 ~~iLL~G----~pGtGKs~la~~ia~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~--~----- 396 (474)
.++.+.| ++|.+++..++.+-.... ..-+....+.....|.+...... |
T Consensus 132 ~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~ 211 (647)
T COG1067 132 QQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTT 211 (647)
T ss_pred hhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCC
Confidence 4566666 899999888765543210 01122223333444555544332 2
Q ss_pred -eeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEE-----EcC---eeEeeCCCeEEEEeecCC
Q 011953 397 -EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA-----KAG---LVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 397 -~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~-----~~g---~~~~~~~~~~viaatNp~ 462 (474)
....++|++..|++|||||||+..+....+..++.+|.++...+. ..+ ..-..|.++.+|++.|+.
T Consensus 212 ~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~ 286 (647)
T COG1067 212 GHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE 286 (647)
T ss_pred CcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH
Confidence 456789999999999999999999998788888888876543221 111 123456789999999983
No 341
>PRK08233 hypothetical protein; Provisional
Probab=95.38 E-value=0.01 Score=53.43 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=21.1
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
|.+.|+||+|||++|+.++..++
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 77889999999999999998775
No 342
>PRK06547 hypothetical protein; Provisional
Probab=95.37 E-value=0.012 Score=52.79 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=24.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.-|++.|++|+|||++++.+++..+..++.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 458888999999999999999887655443
No 343
>PRK04040 adenylate kinase; Provisional
Probab=95.37 E-value=0.014 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++++|.||+|||++++.+++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 3489999999999999999998874
No 344
>PRK01184 hypothetical protein; Provisional
Probab=95.34 E-value=0.013 Score=53.04 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=22.3
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|+|+|+||+|||++++ +++..+.+++..
T Consensus 4 i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 4 IGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 8899999999999998 566666656554
No 345
>PF05729 NACHT: NACHT domain
Probab=95.34 E-value=0.01 Score=52.30 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.0
Q ss_pred ceecCCCCcchhHHHHHHHHh
Q 011953 350 LLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~ 370 (474)
+++.|+||+|||++++.++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998854
No 346
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.34 E-value=0.01 Score=52.07 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.8
Q ss_pred ecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 352 LVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 352 L~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
++||||+|||++++.|++..+-..+.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999887655543
No 347
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.31 E-value=0.013 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=19.0
Q ss_pred ceecCCCCcchhHHHHHHHHhcCce
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
|.|+|+||||||+|++.+++. +..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~ 25 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYP 25 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-E
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCe
Confidence 789999999999999999988 443
No 348
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.011 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=21.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.=+-++||+|||||+|++.||.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3389999999999999999997643
No 349
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.19 E-value=0.062 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-.+++.||+|+|||++++++.+..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3499999999999999999887543
No 350
>PF13479 AAA_24: AAA domain
Probab=95.19 E-value=0.015 Score=54.21 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=23.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~ 380 (474)
..+||+|+||+|||++|..+ +++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E 32 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTE 32 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeC
Confidence 56999999999999999877 776665433
No 351
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.16 E-value=0.026 Score=55.79 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=30.6
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
++....+|.|+|.||+|||++++.+++.++.+++..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 345567899999999999999999999988877743
No 352
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.15 E-value=0.017 Score=56.74 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-+++.|+||+|||++|+.+++..+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 488899999999999999998873
No 353
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.14 E-value=0.016 Score=42.37 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+|.||+|+|||+++.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998654
No 354
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.13 E-value=0.026 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=22.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+++++||+|+|||++++++....+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5699999999999999999998765
No 355
>PRK04182 cytidylate kinase; Provisional
Probab=95.13 E-value=0.017 Score=51.88 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.2
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
|+|.|+||+|||++++.+++.++.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 8899999999999999999988876665
No 356
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.13 E-value=0.011 Score=55.26 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=44.2
Q ss_pred cceecCCCCcchhHHHHHHHHhcC------ceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN------RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR 422 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~ 422 (474)
.++|+||+|+|||+|++++++... +.+|.....-. ..+.. ..++ +.+ ..-.-....-.+++||+++.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~-~~~~~-~~~~-~~~--~~~~~~~~~~DlL~iDDi~~l~ 110 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI-REFAD-ALRD-GEI--EEFKDRLRSADLLIIDDIQFLA 110 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH-HHHHH-HHHT-TSH--HHHHHHHCTSSEEEEETGGGGT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH-HHHHH-HHHc-ccc--hhhhhhhhcCCEEEEecchhhc
Confidence 489999999999999999986531 12232110000 00000 0000 000 0000012345699999999986
Q ss_pred hHh--HHHHHHHHHh
Q 011953 423 EHD--RATIHEAMEQ 435 (474)
Q Consensus 423 ~~~--~~~l~~~me~ 435 (474)
... +..+...++.
T Consensus 111 ~~~~~q~~lf~l~n~ 125 (219)
T PF00308_consen 111 GKQRTQEELFHLFNR 125 (219)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 654 6777777664
No 357
>PRK13764 ATPase; Provisional
Probab=95.11 E-value=0.011 Score=63.04 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.++|+.||||+|||+++++++...+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4599999999999999999997765
No 358
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.10 E-value=0.014 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.1
Q ss_pred ceecCCCCcchhHHHHHHHHhcCc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
|+++|++|+|||+|++.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999965443
No 359
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.10 E-value=0.011 Score=58.55 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+||+|||||+++|.||.+.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999664
No 360
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.09 E-value=0.019 Score=52.83 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=25.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.-+++.|.||+|||++++.++...+...+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~~ 33 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVL 33 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 348999999999999999999887665443
No 361
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.08 E-value=0.02 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.5
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
++++|.||+|||++++.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 362
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.05 E-value=0.013 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.7
Q ss_pred ceecCCCCcchhHHHHHHHHhcCc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
++|+||+|+|||++++.+++..+.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCcc
Confidence 889999999999999999987654
No 363
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=95.03 E-value=0.033 Score=53.69 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=57.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-cCCceEEEEcCCCCCChHhHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMREHDRA 427 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~~~~~~ 427 (474)
-++++|||+||||.|+.+|+...+..-....... .+ ++. ..++-++..||.. +..+..+
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~n~--------------nF-----~f~d~~~k~l~~weE~~-~~~~~ve 174 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWNNN--------------NF-----PFQDCFNKRLIWWEEPN-MYPDEVE 174 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHSCCEEEEECTTT--------------CC-----CCCCCCCECEEECTCGG-CCTTCHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCcccEeccCCC--------------CC-----ChhhhhhccEEEecccC-ccHHHHH
Confidence 4999999999999999999998875322211111 11 111 1234467888864 4555667
Q ss_pred HHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 428 TIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 428 ~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
.+...+....+.+.........-.++-+|.++|-
T Consensus 175 ~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~ 208 (271)
T PF01057_consen 175 TAKMILGGTPVRVDVKNKDSEELERTPVIITSNN 208 (271)
T ss_dssp HHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECC
T ss_pred HHHHHhCCCceEeecccCCceEecCCceEEEecc
Confidence 7777777777877543333222234456667775
No 364
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.014 Score=53.11 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.8
Q ss_pred ceecCCCCcchhHHHHHHHHhcCc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
++|.|+||+|||++|+.+++++..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999988754
No 365
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.00 E-value=0.02 Score=51.04 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
|.+.|+||+|||++++.+++.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999988776654
No 366
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.99 E-value=0.027 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.++|+.|++|+|||++++++....+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 77999999999999999999987764
No 367
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.96 E-value=0.016 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.+++..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4489999999999999999999876
No 368
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.96 E-value=0.022 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCce
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
.+.++|++|+|||++++.++......
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 48899999999999999999987653
No 369
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.88 E-value=0.0085 Score=58.82 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.++.|+|+-|.|||+|+-...+.+|.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCc
Confidence 56999999999999999999988775
No 370
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.86 E-value=0.017 Score=51.95 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++|.|+||+|||++++.+++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999997664
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.75 E-value=0.017 Score=55.17 Aligned_cols=23 Identities=48% Similarity=0.634 Sum_probs=20.8
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
|+|+|.||+|||++|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998763
No 372
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.73 E-value=0.019 Score=52.00 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=17.5
Q ss_pred ceecCCCCcchhHHHHHHHH
Q 011953 350 LLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~ 369 (474)
+|+.||||||||+++..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999887654
No 373
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=94.73 E-value=0.017 Score=60.03 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=24.8
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+....|+|++||+|||||+|+|.++.+-+
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 34458999999999999999999997643
No 374
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.67 E-value=0.021 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred ccceecCCCCcchhHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia 368 (474)
..+.|.||+|+|||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 558999999999999999986
No 375
>PLN02165 adenylate isopentenyltransferase
Probab=94.66 E-value=0.027 Score=55.68 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..+.|+||+|+|||+|+..+++..+..++.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIs 73 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIIN 73 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceec
Confidence 458999999999999999999998765544
No 376
>PRK08356 hypothetical protein; Provisional
Probab=94.64 E-value=0.03 Score=51.41 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=22.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
-++|+||||+|||++++.+.+ .+...+..
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~~~is~ 35 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGFCRVSC 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEeC
Confidence 488999999999999999975 44444443
No 377
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.63 E-value=0.2 Score=48.33 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=44.3
Q ss_pred cceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcc--cCCceEEEEeeCCeeee--eccccccCCceEEEEcCCCCC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST--SAGLTVTAVKDGGEWML--EAGALVLADGGLCCIDEFDSM 421 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~--~~~l~~~~~~~~~~~~~--~~g~l~~a~~gil~iDEid~~ 421 (474)
.+++.|++|+|||++++++....+ ..+++...... ..+.....+.......+ ........++-+++++|+...
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~ 161 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRDA 161 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCCH
Confidence 499999999999999998865443 23343321111 01111111111110000 011122357889999998743
Q ss_pred ChHhHHHHHHHHHhcE
Q 011953 422 REHDRATIHEAMEQQT 437 (474)
Q Consensus 422 ~~~~~~~l~~~me~~~ 437 (474)
+....+.++...|.
T Consensus 162 --e~a~~~~~aa~tGh 175 (264)
T cd01129 162 --ETAEIAVQAALTGH 175 (264)
T ss_pred --HHHHHHHHHHHcCC
Confidence 22334455555443
No 378
>PLN02199 shikimate kinase
Probab=94.62 E-value=0.029 Score=54.38 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=27.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.+|+|+|.+|+|||++++.+++.++.+++.+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDt 133 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDC 133 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 5799999999999999999999888877654
No 379
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.62 E-value=0.018 Score=57.56 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.++|+.|++|+|||++++++....+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC
Confidence 67999999999999999999987654
No 380
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.58 E-value=0.022 Score=52.76 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.+.|++|+|||+|+++++...+
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4488999999999999999998765
No 381
>PRK10536 hypothetical protein; Provisional
Probab=94.58 E-value=0.037 Score=52.62 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.5
Q ss_pred cceecCCCCcchhHHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~ 369 (474)
.++++||+|||||+||.+++.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999886
No 382
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.58 E-value=0.045 Score=61.89 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=46.5
Q ss_pred ceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccC-CceEE-EEeeC--Ceee--eeccccccCCceEEEEcCCCC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSA-GLTVT-AVKDG--GEWM--LEAGALVLADGGLCCIDEFDS 420 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~-~l~~~-~~~~~--~~~~--~~~g~l~~a~~gil~iDEid~ 420 (474)
+++.|.||||||++++.+.+.. +..+........++ .|... ..... ..+. +..+........+++|||+..
T Consensus 365 ~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASM 444 (988)
T PRK13889 365 GVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGM 444 (988)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECccc
Confidence 6799999999999988877553 33343332111110 11100 00000 0010 011222234556999999999
Q ss_pred CChHhHHHHHHHHH
Q 011953 421 MREHDRATIHEAME 434 (474)
Q Consensus 421 ~~~~~~~~l~~~me 434 (474)
++......|+...+
T Consensus 445 v~~~~m~~LL~~a~ 458 (988)
T PRK13889 445 VGTRQLERVLSHAA 458 (988)
T ss_pred CCHHHHHHHHHhhh
Confidence 99887777766554
No 383
>PRK13808 adenylate kinase; Provisional
Probab=94.57 E-value=0.027 Score=55.78 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+|+|+||||+|||++++.|++..+...+.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999998887655554
No 384
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.57 E-value=0.023 Score=52.24 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.2
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.|.||+|+|||++++.++.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999886
No 385
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.55 E-value=0.032 Score=51.21 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.5
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEeCC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~ 380 (474)
.+++||+|||||.+|-.+|+..+.++++...
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 6899999999999999999999998887643
No 386
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.085 Score=51.77 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=48.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEE-EeCCCcccCCceEEEEee--CCeee----------eeccccccCCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTGLGSTSAGLTVTAVKD--GGEWM----------LEAGALVLADGGLCC 414 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~----------~~~g~l~~a~~gil~ 414 (474)
+-.||+|+.|+||+.+++.+++..-...- ..... . .+...... + ++... ..-.++..++.-|++
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~-~-~p~n~~~~-d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQ-E-LPANIILF-DIFDKDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCC-C-CCcceEEe-ccCCCcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 34679999999999999999976511000 00000 0 00000001 1 00000 000011113567999
Q ss_pred EcCCCCCChHhHHHHHHHHHh
Q 011953 415 IDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 415 iDEid~~~~~~~~~l~~~me~ 435 (474)
||+.++|+...+++|+..||+
T Consensus 96 I~~~e~m~~~a~NaLLK~LEE 116 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEE 116 (299)
T ss_pred EecccccCHHHHHHHHHHhhC
Confidence 999999999999999999996
No 387
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.54 E-value=0.054 Score=61.69 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=51.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCccc-------CCceEEEEeeCCeee--eeccccccCCceEEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDGGEWM--LEAGALVLADGGLCCI 415 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~--~~~g~l~~a~~gil~i 415 (474)
.-.++.|++|||||++++.+.+.. +..++........ .|+.+.-+ ..|. ...+...+..+.+++|
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI---as~ll~~~~~~~~l~~~~vlVI 474 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL---SSWELRWNQGRDQLDNKTVFVL 474 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH---HHHHhhhccCccCCCCCcEEEE
Confidence 348999999999999999998753 4344433221111 12211100 1111 1122223345679999
Q ss_pred cCCCCCChHhHHHHHHHHHh
Q 011953 416 DEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 416 DEid~~~~~~~~~l~~~me~ 435 (474)
||...++......|+...+.
T Consensus 475 DEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 475 DEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred ECcccCCHHHHHHHHHHHHh
Confidence 99999999888888887763
No 388
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.49 E-value=0.03 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.6
Q ss_pred cCCCCcchhHHHHHHHHhcCceEE
Q 011953 353 VGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 353 ~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
+|+||+|||++++.++...+...+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~ 24 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL 24 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE
Confidence 599999999999999998875443
No 389
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.47 E-value=0.021 Score=56.83 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.4
Q ss_pred ceecCCCCcchhHHHHHHHHh
Q 011953 350 LLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~ 370 (474)
+-|.||+|||||+++|.||.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 779999999999999999965
No 390
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.44 E-value=0.028 Score=51.17 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-+.|+||||+|||+|++.+.+..+.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 34899999999999999999877654
No 391
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.43 E-value=0.055 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=20.8
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...++|+||+|+|||+++..++..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999988887543
No 392
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.42 E-value=0.023 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.0
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
++|+|++|+|||+|++++....
T Consensus 4 imliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 8999999999999999998643
No 393
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.40 E-value=0.027 Score=52.26 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.|.|+||+|||+|++.+++..+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999998873
No 394
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.33 E-value=0.1 Score=50.74 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=24.7
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
++++||+|+|||.|+..+++..+..++..
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~ 30 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISV 30 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEe
Confidence 68899999999999999999887655543
No 395
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.026 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-.-|+||+|||||+++|.+-++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhc
Confidence 335678999999999999998764
No 396
>PRK12338 hypothetical protein; Provisional
Probab=94.32 E-value=0.037 Score=54.42 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
.-+++.|+||+|||++|+.+|+.++...+
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 55899999999999999999998876544
No 397
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.28 E-value=0.027 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.2
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
-+.|+|+||+|||++++.++..+
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 398
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.26 E-value=0.04 Score=49.41 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
.+|+.|+||+|||++|..++...+.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~ 29 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQV 29 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 489999999999999999998766443
No 399
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.24 E-value=0.025 Score=48.41 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.3
Q ss_pred ccccceecCCCCcchhHHHHHHHHhcC
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
....+.++|++|+|||+|+++++....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 346699999999999999999997754
No 400
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.21 E-value=0.027 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
|.+.|+||+|||++|+.++..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999998876
No 401
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.17 E-value=0.039 Score=50.04 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++|+||+|+|||+|++.+.+..+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccc
Confidence 45999999999999999999988764
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.15 E-value=0.047 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...+++||.|+|||.+++++.-.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998744
No 403
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.10 E-value=0.043 Score=51.31 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=25.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.+.+.||+|+|||++++.+++..+..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 4789999999999999999988876665543
No 404
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.10 E-value=0.088 Score=53.24 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=46.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcC-----ceEEEeCCCccc--CC---ceEEEEeeCCee--eee--ccccccCCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTS--AG---LTVTAVKDGGEW--MLE--AGALVLADGGLCC 414 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~-----~~~~~~~~~~~~--~~---l~~~~~~~~~~~--~~~--~g~l~~a~~gil~ 414 (474)
.+|+.||+|+|||++++++.+..+ ..+++....... .+ +......+.+.- .+. .......++.+++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999976542 234443211110 00 000000110100 000 0112334889999
Q ss_pred EcCCCCCChHhHHHHHHHHHhcEE
Q 011953 415 IDEFDSMREHDRATIHEAMEQQTI 438 (474)
Q Consensus 415 iDEid~~~~~~~~~l~~~me~~~~ 438 (474)
++|+-. .+......++.+.|..
T Consensus 231 vGEiRd--~et~~~al~aa~TGH~ 252 (372)
T TIGR02525 231 VGEIRD--LETFQAAVLAGQSGHF 252 (372)
T ss_pred eCCCCC--HHHHHHHHHHHhcCCc
Confidence 999874 3344445667766543
No 405
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.09 E-value=0.051 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++|+||+|+||+++++.+.+..+.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~ 28 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPD 28 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 45999999999999999999988653
No 406
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.07 E-value=0.044 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+++|+||.|+|||+|++.+.+...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 6699999999999999999998764
No 407
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.04 E-value=0.03 Score=46.43 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=19.0
Q ss_pred ceecCCCCcchhHHHHHHHH
Q 011953 350 LLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~ 369 (474)
|+++|+||+|||+|..++..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999996
No 408
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.04 E-value=0.039 Score=58.58 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=25.8
Q ss_pred ceeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.++...++|+.||+|||||+|.|+|+.+-|
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 445567899999999999999999998754
No 409
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.00 E-value=0.05 Score=49.19 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=23.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|.|+|.||+|||++++.+++ .+..++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 67999999999999999998 56555543
No 410
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.97 E-value=0.037 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.8
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...+||.||+|+|||+++..+.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 367999999999999999877764
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.97 E-value=0.051 Score=49.49 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
|.+.|+||+|||++|+.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999874
No 412
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.96 E-value=0.031 Score=54.68 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=43.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceE-EEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR 426 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~ 426 (474)
..+-|+|++++|||++++.++...+.+. +...-.++..+| .+.+...+...++|||+....+...
T Consensus 194 ~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~~l~~sw~~T~n~l--------------e~~a~~~nd~~l~lDE~~~~~~~~~ 259 (286)
T PF06048_consen 194 FGFHLYGQSSSGKTTALQLAASVWGNPDGLIRSWNSTDNGL--------------ERTAAAHNDLPLVLDELSQADPKDV 259 (286)
T ss_pred eEEEEEeCCCCCHHHHHHHhhhhCcCchhhhhcchhhHHHH--------------HHHHHHcCCcceEehhccccchhHH
Confidence 3477899999999999999998877655 111111111111 1122344677899999999877653
Q ss_pred HH
Q 011953 427 AT 428 (474)
Q Consensus 427 ~~ 428 (474)
..
T Consensus 260 ~~ 261 (286)
T PF06048_consen 260 GS 261 (286)
T ss_pred HH
Confidence 33
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=0.092 Score=52.93 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=23.4
Q ss_pred cccCCceEEEEcCCC-CCChHhHHHHHHHHHh
Q 011953 405 LVLADGGLCCIDEFD-SMREHDRATIHEAMEQ 435 (474)
Q Consensus 405 l~~a~~gil~iDEid-~~~~~~~~~l~~~me~ 435 (474)
+.+..+.|+++||-. .+.-+...+|-+++.+
T Consensus 718 Lal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 718 LALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred HhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 344567799999974 4677778899999874
No 414
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.94 E-value=0.034 Score=52.97 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..-+.|.||.|+|||+|+|+++++.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35588999999999999999998654
No 415
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.94 E-value=0.04 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-++|+||||+|||+|++.+.+..+
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcCC
Confidence 4588999999999999999986543
No 416
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.92 E-value=0.035 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+|+|+||+|||+|++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988743
No 417
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.91 E-value=0.14 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.7
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.-++|+||.|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4489999999999999999984
No 418
>PRK06696 uridine kinase; Validated
Probab=93.86 E-value=0.054 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-|.+.|+||+|||++|+.+++.+
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999877
No 419
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.85 E-value=0.063 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.++++.|++|+|||++++++....+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCc
Confidence 67999999999999999999987653
No 420
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.85 E-value=0.036 Score=56.07 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+||+-|+||.|||++|+++|+..
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHH
Confidence 349999999999999999999764
No 421
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=93.83 E-value=0.051 Score=48.83 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=25.3
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
|+|.|+|.+|||++|++|...++.+++..+
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~~~p~~~l~ 33 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERLPEPWLHLS 33 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcCCeEEEe
Confidence 899999999999999999999998876653
No 422
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.81 E-value=0.035 Score=54.54 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.++++.|++|+|||++++++....
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999775
No 423
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=93.79 E-value=0.11 Score=49.60 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=49.9
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc--eEEEeCCC--------cccCCceEEEEeeCCeee----e--eccccc----
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLG--------STSAGLTVTAVKDGGEWM----L--EAGALV---- 406 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~--~~~~~~~~--------~~~~~l~~~~~~~~~~~~----~--~~g~l~---- 406 (474)
++-.||+||+|+||..+|.++|+..-- ..-..+.. .+.+++.. +...+... . -...+.
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~--i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYL--IFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEE--ecCCcccCCHHHHHHHHHHHccCch
Confidence 366999999999999999999965321 10000100 00111111 11000000 0 000011
Q ss_pred -cCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 407 -LADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 407 -~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
.+..-|++|+++++|+....++|+..+|+
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEE 114 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEE 114 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcC
Confidence 12346999999999999999999999995
No 424
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.75 E-value=0.052 Score=57.08 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...||+||||||||+|++.|++..
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHH
Confidence 449999999999999999999743
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.71 E-value=0.042 Score=51.22 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.1
Q ss_pred ccccceecCCCCcchhHHHHHHHHhcC
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
....+.|+||+|+|||+|++.|+.+.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 345699999999999999999997753
No 426
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.038 Score=51.65 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+=|+|++|||||+|+|+++.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 347789999999999999999664
No 427
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.70 E-value=0.044 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.-++++||||+|||+++..++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5599999999999999888774
No 428
>PRK13975 thymidylate kinase; Provisional
Probab=93.66 E-value=0.045 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
-|.+.|++|+|||++++.+++.++.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999988764
No 429
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.65 E-value=0.04 Score=54.53 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.|+|+.|++|+|||++++++....
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998764
No 430
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=0.046 Score=58.52 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.4
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhc
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+++...+-|+||+|.|||+++..+-+.-
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445689999999999999999998764
No 431
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=93.62 E-value=0.085 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=18.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+||+||+|+|||.|...+..-
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHS
T ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Confidence 45999999999999998888764
No 432
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.59 E-value=0.045 Score=50.76 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.0
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.++.+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334568999999999999999999764
No 433
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.58 E-value=0.033 Score=53.88 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=46.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce---EEEeCCC-cc-cCCce-EEEEee-C-CeeeeeccccccCCceEEEEcCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLG-ST-SAGLT-VTAVKD-G-GEWMLEAGALVLADGGLCCIDEFD 419 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~---~~~~~~~-~~-~~~l~-~~~~~~-~-~~~~~~~g~l~~a~~gil~iDEid 419 (474)
.++++.|++|+|||++++++....+.. +++.... .. ..+.. ...... . ..+........+.++.+++++|+.
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 679999999999999999999876543 2222210 00 01111 111111 0 001001112234578899999998
Q ss_pred CCChHhHHHHHHHHHhcEE
Q 011953 420 SMREHDRATIHEAMEQQTI 438 (474)
Q Consensus 420 ~~~~~~~~~l~~~me~~~~ 438 (474)
.. +.... .+++..|..
T Consensus 208 ~~--e~~~~-~~a~~tGh~ 223 (270)
T PF00437_consen 208 DP--EAAEA-IQAANTGHL 223 (270)
T ss_dssp SC--HHHHH-HHHHHTT-E
T ss_pred CH--hHHHH-HHhhccCCc
Confidence 64 34445 778876653
No 434
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.56 E-value=0.04 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.2
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.++++.|+||+|||++++++...
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999999875
No 435
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.046 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=24.1
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.....+.|+||+|+|||+|++.++.+.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34446799999999999999999997753
No 436
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.54 E-value=0.048 Score=50.67 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=23.6
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|+||+|+|||+|++.++...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346689999999999999999998753
No 437
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.52 E-value=0.051 Score=48.31 Aligned_cols=87 Identities=20% Similarity=0.333 Sum_probs=50.4
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCccc-C-----CceEEEEeeCCeeeeeccc--------cc
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTS-A-----GLTVTAVKDGGEWMLEAGA--------LV 406 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~-~-----~l~~~~~~~~~~~~~~~g~--------l~ 406 (474)
+.....+.|.||+|+|||+|++.++.+.+. .+...+..... . .....+... +..|. ..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-----LS~G~~qrl~laral 97 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ-----LSVGERQMVEIARAL 97 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-----cCHHHHHHHHHHHHH
Confidence 444567999999999999999999987543 12211110000 0 000001100 11111 12
Q ss_pred cCCceEEEEcCCCC-CChHhHHHHHHHHHh
Q 011953 407 LADGGLCCIDEFDS-MREHDRATIHEAMEQ 435 (474)
Q Consensus 407 ~a~~gil~iDEid~-~~~~~~~~l~~~me~ 435 (474)
..++.++++||-.. +....+..+.+++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 23678999999765 677777788777754
No 438
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.50 E-value=0.066 Score=49.17 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|.++|++|+|||++++.+++..+..++..
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~ 32 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDA 32 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeC
Confidence 88999999999999999998867666543
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.49 E-value=0.05 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
|.+.|+||+|||++++.++....
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998753
No 440
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.49 E-value=0.05 Score=49.07 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=24.3
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
++....+.+.||+|+|||+|++.++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34446799999999999999999998754
No 441
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.46 E-value=0.05 Score=47.86 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=43.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEE--eeC-Ceeeeecccc--ccCCceEEEEcCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAV--KDG-GEWMLEAGAL--VLADGGLCCIDEFD 419 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~g~l--~~a~~gil~iDEid 419 (474)
.-|+|+|-||+|||+||+++.+.+ +...+.........++....- .+. .++....+.+ .+++.|+++|=-+-
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~i 82 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAFI 82 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeec
Confidence 348999999999999999999654 344544321111111111000 000 0011111111 12344555554466
Q ss_pred CCChHhHHHHHHHHHh
Q 011953 420 SMREHDRATIHEAMEQ 435 (474)
Q Consensus 420 ~~~~~~~~~l~~~me~ 435 (474)
.+-.+.+....+.+..
T Consensus 83 sp~~~~R~~~R~~~~~ 98 (156)
T PF01583_consen 83 SPYREDREWARELIPN 98 (156)
T ss_dssp --SHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHhCCc
Confidence 6667778888888875
No 442
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.45 E-value=0.07 Score=52.55 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-++++||+|+|||+||..+++..+..++.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~~iis 34 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNGEIIS 34 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCCcEEe
Confidence 48999999999999999999987765443
No 443
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.44 E-value=0.052 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.9
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
..-+|+.||||||||.|+..++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l 40 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFL 40 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHH
Confidence 4679999999999999987655
No 444
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.41 E-value=0.052 Score=49.71 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.1
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+....+.|+|++|+|||+|++.++.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 334568999999999999999999774
No 445
>PRK06761 hypothetical protein; Provisional
Probab=93.37 E-value=0.065 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred ceecCCCCcchhHHHHHHHHhcCc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
+++.|+||+|||++++.+++.+..
T Consensus 6 IvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 6 IIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCc
Confidence 899999999999999999987754
No 446
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.34 E-value=0.052 Score=51.52 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=22.9
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.|+.+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 334569999999999999999999764
No 447
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.34 E-value=0.054 Score=50.31 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.2
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.++.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334669999999999999999999774
No 448
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.33 E-value=0.056 Score=49.87 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.5
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|+||+|+|||+|++.++.+.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346699999999999999999997653
No 449
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.32 E-value=0.059 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=19.5
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..-+++.|+||||||+++-.++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36699999999999999887654
No 450
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.055 Score=46.89 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=26.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-++++|++|+|||++++++++.++..++.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~d 42 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFID 42 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccc
Confidence 48899999999999999999999887764
No 451
>PTZ00202 tuzin; Provisional
Probab=93.30 E-value=0.17 Score=51.81 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=41.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCC
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG 381 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~ 381 (474)
.++..|.+..-.++...|-+. . .. ...-+.|.|++|||||++++.+....+...+.....
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~-d-----~~---~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRL-D-----TA---HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhcc-C-----CC---CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 456778877777776555432 0 01 112478999999999999999998888766655443
No 452
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.057 Score=48.34 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.9
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|.||+|+|||+|++.++.+.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3446699999999999999999998754
No 453
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.28 E-value=0.054 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.4
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.|+++|+||+|||+|+.++...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988753
No 454
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.27 E-value=0.052 Score=47.87 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.6
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
+|+++|++|+|||+|+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 4899999999999999998754
No 455
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=93.27 E-value=0.051 Score=56.04 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=25.2
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.+..|+|+.||.|||||+|.|.++.+-|
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWP 533 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWP 533 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCc
Confidence 44568999999999999999999997754
No 456
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.27 E-value=0.052 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..++++|++|+|||+|++.+...
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 56999999999999999999864
No 457
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.26 E-value=0.099 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...++|+||+|+|||+++..++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988854
No 458
>PRK05439 pantothenate kinase; Provisional
Probab=93.26 E-value=0.049 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.+.|+||+|||++|+.++..+.
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5588999999999999999998654
No 459
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.23 E-value=0.055 Score=50.20 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=23.4
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|+||+|+|||+|++.++.+.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3346699999999999999999997643
No 460
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.23 E-value=0.054 Score=50.98 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.6
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhc
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.....+.|+||+|+|||+|++.++.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344669999999999999999999764
No 461
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.23 E-value=0.057 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.1
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+.|+||+|+|||+|++.++.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999764
No 462
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.22 E-value=0.075 Score=50.38 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=18.9
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
...+|+.||||+|||.++..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l 42 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFL 42 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3679999999999999887654
No 463
>PLN02840 tRNA dimethylallyltransferase
Probab=93.16 E-value=0.19 Score=51.30 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=25.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.-+++.||+|+|||+|+..+++..+..++.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis 51 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIIS 51 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEe
Confidence 458999999999999999999998765544
No 464
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.16 E-value=0.055 Score=50.55 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.5
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhc
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
++....+.|+||+|+|||+|++.++.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444679999999999999999999764
No 465
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.16 E-value=0.056 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.4
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.|+++|+||+|||+|++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998743
No 466
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.14 E-value=0.058 Score=46.32 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+.++...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999988753
No 467
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.14 E-value=0.059 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.0
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+....+.|+||+|+|||+|++.++.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334569999999999999999999764
No 468
>PRK13695 putative NTPase; Provisional
Probab=93.12 E-value=0.06 Score=48.35 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.4
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
+++|+|+||+|||+|++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 469
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.12 E-value=0.058 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=18.7
Q ss_pred ceecCCCCcchhHHHHHHHHh
Q 011953 350 LLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~ 370 (474)
++++|+||+|||++++.++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999888865
No 470
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.11 E-value=0.056 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.8
Q ss_pred ceecCCCCcchhHHHHHHHHh
Q 011953 350 LLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~ 370 (474)
|+++|+||+|||+|+.++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988743
No 471
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.11 E-value=0.064 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++++||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 55999999999999999999976643
No 472
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.11 E-value=0.063 Score=55.65 Aligned_cols=31 Identities=35% Similarity=0.389 Sum_probs=26.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.-+||+||+|||||+.++.+++..+..+...
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 3489999999999999999999988755543
No 473
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.10 E-value=0.057 Score=47.25 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.2
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
+|+++|++|+|||+|+..+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999988753
No 474
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.10 E-value=0.06 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.1
Q ss_pred ccccceecCCCCcchhHHHHHHHHhcC
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
....+.|+|++|+|||+|++.|+.+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 335689999999999999999997753
No 475
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.10 E-value=0.059 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.1
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...+.|+||+|+|||+|++.++.+.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999774
No 476
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.08 E-value=0.063 Score=48.17 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.6
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|+||+|+|||+|++.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3345699999999999999999998754
No 477
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.07 E-value=0.07 Score=47.87 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.7
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
...+.|+||+|+|||+|++.++.+.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35689999999999999999998754
No 478
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.06 E-value=0.071 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
.++|+|+||+|||+|++.+++..+...
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 489999999999999999999876544
No 479
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.06 E-value=0.06 Score=49.05 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=22.9
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.|+.+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334568999999999999999999764
No 480
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.05 E-value=0.063 Score=49.57 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.0
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.++.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334569999999999999999999764
No 481
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.04 E-value=0.065 Score=48.43 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=23.8
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|.||+|+|||+|++.++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446699999999999999999998754
No 482
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.03 E-value=0.054 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred ceecCCCCcchhHHHHHHHHh
Q 011953 350 LLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~ 370 (474)
+.++|++|+|||+|++++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999864
No 483
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=93.02 E-value=0.063 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.0
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+++|+|+||+|||+|++++.+-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998743
No 484
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.02 E-value=0.76 Score=41.44 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+++||.|+|||.++.+|.-.+.
T Consensus 25 ~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999986544
No 485
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.01 E-value=0.099 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.7
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
...|+|+|.||+|||++++.+++.+..
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 356999999999999999999987764
No 486
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.01 E-value=0.079 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.9
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-+.|+||||+|||+++..++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 55899999999999999988743
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.99 E-value=0.063 Score=50.71 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=23.4
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|+||+|+|||+|++.++.+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3345689999999999999999997653
No 488
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.99 E-value=0.067 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=18.9
Q ss_pred ccceecCCCCcchhHHH-HHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFL-KFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la-~~ia~~ 370 (474)
.-+++.|+||||||+++ +.++..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 56999999999999996 555555
No 489
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=92.98 E-value=0.064 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.5
Q ss_pred cceecCCCCcchhHHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~ 369 (474)
.|+++|+||+|||+|+..+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987764
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.97 E-value=0.064 Score=49.91 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=22.5
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
...+.|+||+|+|||+|++.++.+.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35689999999999999999997643
No 491
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.97 E-value=0.067 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.-++++|+||+|||+++..++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5589999999999999988874
No 492
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.96 E-value=0.068 Score=49.19 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=23.2
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.++...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344669999999999999999999764
No 493
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.95 E-value=0.064 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.4
Q ss_pred ccccceecCCCCcchhHHHHHHHHhc
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
....+.|+||+|+|||+|++.|+.+.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999764
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.068 Score=49.95 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=23.1
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.....+.|+||+|+|||+|++.++.+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334668999999999999999999774
No 495
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.94 E-value=0.089 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++|.||+|+|||+|++++....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 448999999999999999998776
No 496
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=92.94 E-value=0.065 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.5
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
+++++|+||+|||+|++.+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998743
No 497
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.94 E-value=0.065 Score=47.08 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.5
Q ss_pred ceecCCCCcchhHHHHHHHH
Q 011953 350 LLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~ 369 (474)
|+++|+||+|||+|++++..
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998875
No 498
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.92 E-value=0.095 Score=51.13 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
.-+++.|++|+|||++|+.+++.++...
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 5699999999999999999998887653
No 499
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.91 E-value=0.066 Score=46.68 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.8
Q ss_pred cceecCCCCcchhHHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~ 369 (474)
.|+++|+||+|||+|+..+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999988874
No 500
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.90 E-value=0.083 Score=54.08 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
..|.++|++|||||+|++.+++..+..
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 459999999999999999999886643
Done!