Query 011953
Match_columns 474
No_of_seqs 310 out of 2792
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 18:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 2.4E-73 8.3E-78 605.9 30.3 438 8-472 3-455 (595)
2 1ltl_A DNA replication initiat 100.0 1.2E-49 4.1E-54 384.5 25.6 258 7-296 12-270 (279)
3 2vl6_A SSO MCM N-TER, minichro 100.0 1.1E-48 3.9E-53 376.3 24.5 249 4-274 6-266 (268)
4 3f8t_A Predicted ATPase involv 100.0 2.2E-48 7.4E-53 391.3 16.3 272 162-471 79-358 (506)
5 2r44_A Uncharacterized protein 99.6 1.2E-15 4E-20 151.1 14.5 139 306-463 19-161 (331)
6 1g8p_A Magnesium-chelatase 38 99.6 1.3E-15 4.3E-20 151.7 8.5 143 313-467 23-203 (350)
7 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 4.7E-15 1.6E-19 153.7 8.4 138 306-462 14-159 (500)
8 4b4t_J 26S protease regulatory 99.5 1.2E-14 4.3E-19 145.2 4.2 139 313-469 147-304 (405)
9 4b4t_I 26S protease regulatory 99.4 3.7E-14 1.3E-18 142.2 4.9 140 312-470 180-339 (437)
10 4b4t_L 26S protease subunit RP 99.4 5.6E-14 1.9E-18 142.6 6.2 135 313-469 180-337 (437)
11 3co5_A Putative two-component 99.4 2.3E-14 8E-19 124.1 2.5 90 347-462 27-116 (143)
12 4b4t_M 26S protease regulatory 99.4 3.8E-14 1.3E-18 143.7 4.0 135 313-469 180-337 (434)
13 1um8_A ATP-dependent CLP prote 99.4 5.9E-14 2E-18 141.4 5.3 156 306-461 13-211 (376)
14 3n70_A Transport activator; si 99.4 9.5E-14 3.2E-18 120.5 5.0 90 347-462 24-116 (145)
15 1ojl_A Transcriptional regulat 99.4 8.7E-14 3E-18 136.0 4.0 136 315-462 3-147 (304)
16 2bjv_A PSP operon transcriptio 99.4 9.8E-14 3.4E-18 132.8 4.2 137 314-462 6-151 (265)
17 4b4t_H 26S protease regulatory 99.4 1.2E-13 4E-18 139.9 4.4 145 313-469 208-365 (467)
18 4b4t_K 26S protease regulatory 99.4 1.1E-13 3.6E-18 140.4 1.7 137 313-469 171-328 (428)
19 3k1j_A LON protease, ATP-depen 99.3 1.1E-12 3.6E-17 140.2 7.0 140 312-467 39-269 (604)
20 1xwi_A SKD1 protein; VPS4B, AA 99.3 6.4E-13 2.2E-17 130.9 4.2 140 313-468 11-165 (322)
21 3pfi_A Holliday junction ATP-d 99.3 1.4E-12 4.9E-17 129.1 6.7 137 312-467 27-169 (338)
22 1r6b_X CLPA protein; AAA+, N-t 99.3 3.6E-12 1.2E-16 139.9 9.8 151 307-462 451-608 (758)
23 3hws_A ATP-dependent CLP prote 99.3 2.6E-14 9E-19 143.3 -6.8 134 307-440 8-161 (363)
24 4fcw_A Chaperone protein CLPB; 99.3 1.7E-12 5.8E-17 126.9 5.8 150 307-461 10-169 (311)
25 3eie_A Vacuolar protein sortin 99.3 2.9E-13 1E-17 133.4 -0.4 139 313-468 17-170 (322)
26 3t15_A Ribulose bisphosphate c 99.3 1.4E-12 4.9E-17 126.7 3.4 118 345-468 34-171 (293)
27 2qp9_X Vacuolar protein sortin 99.3 1E-12 3.5E-17 131.2 2.3 142 311-468 48-203 (355)
28 1ofh_A ATP-dependent HSL prote 99.3 8.1E-13 2.8E-17 128.9 1.3 150 306-461 7-177 (310)
29 3vfd_A Spastin; ATPase, microt 99.3 1.8E-12 6.3E-17 131.0 4.0 141 313-467 114-267 (389)
30 2zan_A Vacuolar protein sortin 99.2 2.2E-12 7.7E-17 132.6 4.2 143 312-468 132-287 (444)
31 1hqc_A RUVB; extended AAA-ATPa 99.2 4.2E-11 1.4E-15 117.6 13.0 137 313-468 11-154 (324)
32 3pxi_A Negative regulator of g 99.2 1.1E-11 3.8E-16 136.0 7.5 142 309-462 486-630 (758)
33 3b9p_A CG5977-PA, isoform A; A 99.2 7.1E-12 2.4E-16 121.7 4.7 144 312-468 19-175 (297)
34 3cf2_A TER ATPase, transitiona 99.2 7.5E-12 2.6E-16 135.7 5.2 139 314-469 477-633 (806)
35 3dzd_A Transcriptional regulat 99.2 1.1E-11 3.6E-16 124.3 5.3 113 347-461 152-272 (368)
36 1ny5_A Transcriptional regulat 99.2 8.6E-12 2.9E-16 125.9 4.1 113 347-461 160-281 (387)
37 2qz4_A Paraplegin; AAA+, SPG7, 99.2 8.8E-12 3E-16 118.6 3.7 139 313-468 5-161 (262)
38 3syl_A Protein CBBX; photosynt 99.2 1.4E-11 4.9E-16 120.2 5.1 136 306-461 23-178 (309)
39 3d8b_A Fidgetin-like protein 1 99.2 3.6E-12 1.2E-16 127.3 0.6 143 312-467 82-236 (357)
40 3m6a_A ATP-dependent protease 99.1 1E-11 3.5E-16 130.7 2.1 153 307-468 74-240 (543)
41 3cf2_A TER ATPase, transitiona 99.1 1.8E-11 6E-16 132.9 3.7 139 313-469 203-357 (806)
42 3cf0_A Transitional endoplasmi 99.1 1.5E-11 5E-16 120.0 2.0 139 313-468 14-170 (301)
43 3h4m_A Proteasome-activating n 99.1 8.1E-12 2.8E-16 120.5 -0.4 143 313-467 16-171 (285)
44 1lv7_A FTSH; alpha/beta domain 99.1 4.6E-11 1.6E-15 113.5 4.3 139 312-469 10-167 (257)
45 3hu3_A Transitional endoplasmi 99.1 2E-11 7E-16 126.5 0.7 137 314-468 204-356 (489)
46 2r62_A Cell division protease 99.0 2.7E-11 9.3E-16 115.8 1.2 139 313-469 10-168 (268)
47 1qvr_A CLPB protein; coiled co 99.0 1.3E-10 4.3E-15 129.1 6.4 144 313-461 557-710 (854)
48 3pvs_A Replication-associated 99.0 4.5E-11 1.5E-15 122.7 2.2 107 312-437 24-134 (447)
49 3u61_B DNA polymerase accessor 99.0 2.3E-10 8E-15 112.4 5.6 127 312-468 24-152 (324)
50 2ce7_A Cell division protein F 99.0 6.6E-11 2.2E-15 121.8 1.5 137 313-468 15-170 (476)
51 1g41_A Heat shock protein HSLU 98.9 1.4E-09 4.6E-14 110.6 7.7 74 306-379 7-82 (444)
52 2dhr_A FTSH; AAA+ protein, hex 98.9 2.2E-09 7.5E-14 111.1 7.0 138 312-469 29-186 (499)
53 2chg_A Replication factor C sm 98.8 1.5E-09 5.2E-14 99.5 4.8 126 312-466 15-146 (226)
54 2c9o_A RUVB-like 1; hexameric 98.8 1.2E-10 4E-15 120.2 -4.0 98 310-424 33-141 (456)
55 1ypw_A Transitional endoplasmi 98.8 4.6E-10 1.6E-14 123.4 -1.4 139 313-469 476-633 (806)
56 1d2n_A N-ethylmaleimide-sensit 98.8 5.8E-10 2E-14 106.8 -1.4 112 347-466 64-181 (272)
57 3uk6_A RUVB-like 2; hexameric 98.8 1.6E-09 5.6E-14 108.2 1.7 51 313-373 43-96 (368)
58 2x8a_A Nuclear valosin-contain 98.7 1.3E-09 4.4E-14 104.6 0.9 136 313-468 9-162 (274)
59 1sxj_D Activator 1 41 kDa subu 98.7 6.1E-09 2.1E-13 103.2 5.5 127 312-466 35-177 (353)
60 1iqp_A RFCS; clamp loader, ext 98.7 3.8E-09 1.3E-13 103.3 3.6 125 312-465 23-153 (327)
61 2chq_A Replication factor C sm 98.7 1.9E-09 6.7E-14 105.1 1.2 126 312-466 15-146 (319)
62 4akg_A Glutathione S-transfera 98.7 6.2E-09 2.1E-13 125.4 4.4 116 347-463 1267-1395(2695)
63 2p65_A Hypothetical protein PF 98.7 2.6E-09 9E-14 95.3 0.5 50 310-371 18-67 (187)
64 1njg_A DNA polymerase III subu 98.7 1.2E-08 4.1E-13 94.6 4.8 131 312-466 21-170 (250)
65 1jbk_A CLPB protein; beta barr 98.7 4.7E-09 1.6E-13 93.8 1.9 52 308-371 16-67 (195)
66 1in4_A RUVB, holliday junction 98.7 1.9E-08 6.5E-13 99.3 6.0 133 315-466 26-164 (334)
67 1ypw_A Transitional endoplasmi 98.6 3.7E-09 1.3E-13 116.2 0.6 140 313-470 203-358 (806)
68 3pxg_A Negative regulator of g 98.6 1.5E-08 5.3E-13 104.6 4.5 110 313-463 179-302 (468)
69 1sxj_C Activator 1 40 kDa subu 98.6 1.4E-08 4.8E-13 100.5 3.9 123 312-463 23-151 (340)
70 1jr3_A DNA polymerase III subu 98.6 5.1E-08 1.8E-12 97.2 6.1 127 313-465 15-162 (373)
71 1sxj_B Activator 1 37 kDa subu 98.5 5.7E-08 2E-12 94.7 5.5 127 312-466 19-151 (323)
72 1ixz_A ATP-dependent metallopr 98.5 4.2E-09 1.5E-13 99.6 -3.4 62 314-377 16-79 (254)
73 3pxi_A Negative regulator of g 98.5 3.9E-08 1.3E-12 107.7 3.7 110 313-463 179-302 (758)
74 1sxj_A Activator 1 95 kDa subu 98.5 1.9E-07 6.5E-12 97.6 8.6 123 313-435 38-177 (516)
75 1sxj_E Activator 1 40 kDa subu 98.4 5.9E-07 2E-11 89.0 10.2 45 313-369 13-58 (354)
76 1iy2_A ATP-dependent metallopr 98.4 1E-08 3.5E-13 98.5 -2.7 139 313-468 39-194 (278)
77 4akg_A Glutathione S-transfera 98.4 2.8E-07 9.4E-12 111.3 8.9 105 348-462 646-757 (2695)
78 1qvr_A CLPB protein; coiled co 98.4 1E-07 3.5E-12 105.7 4.5 119 312-462 168-309 (854)
79 2v1u_A Cell division control p 98.4 2.5E-07 8.5E-12 92.4 6.3 134 313-462 18-177 (387)
80 3vkg_A Dynein heavy chain, cyt 98.4 1.7E-07 6E-12 113.7 5.4 115 347-463 1304-1433(3245)
81 1r6b_X CLPA protein; AAA+, N-t 98.4 1E-07 3.5E-12 104.5 2.4 46 314-371 186-231 (758)
82 2kjq_A DNAA-related protein; s 98.3 7.5E-07 2.6E-11 77.1 7.3 69 348-435 37-109 (149)
83 1a5t_A Delta prime, HOLB; zinc 98.3 3.9E-07 1.3E-11 89.8 5.3 121 319-465 7-151 (334)
84 2gno_A DNA polymerase III, gam 98.3 5.2E-07 1.8E-11 87.7 5.4 101 318-435 1-108 (305)
85 3ec2_A DNA replication protein 98.3 1.6E-07 5.4E-12 83.8 1.3 102 348-465 39-147 (180)
86 2qby_B CDC6 homolog 3, cell di 98.3 2.4E-07 8.2E-12 92.7 2.5 50 314-371 20-69 (384)
87 3te6_A Regulatory protein SIR3 98.3 4.5E-07 1.5E-11 88.3 4.1 102 348-462 46-173 (318)
88 1tue_A Replication protein E1; 98.2 4.4E-07 1.5E-11 82.0 3.1 97 348-462 59-157 (212)
89 1l8q_A Chromosomal replication 98.2 1.9E-07 6.6E-12 91.5 0.6 82 348-435 38-126 (324)
90 1fnn_A CDC6P, cell division co 98.2 1.2E-06 3.9E-11 87.7 5.6 133 313-462 16-169 (389)
91 3bos_A Putative DNA replicatio 98.2 1.1E-06 3.7E-11 81.5 4.9 74 348-435 53-132 (242)
92 1u0j_A DNA replication protein 98.0 7.2E-06 2.5E-10 77.3 6.7 93 348-461 105-199 (267)
93 2z4s_A Chromosomal replication 98.0 7.3E-07 2.5E-11 91.3 -0.9 82 348-435 131-222 (440)
94 2w58_A DNAI, primosome compone 97.9 7.8E-07 2.7E-11 80.7 -1.0 24 348-371 55-78 (202)
95 3vkg_A Dynein heavy chain, cyt 97.9 1.8E-05 6.2E-10 96.5 8.3 104 348-461 605-716 (3245)
96 2qgz_A Helicase loader, putati 97.8 1.1E-06 3.9E-11 85.5 -1.9 25 348-372 153-177 (308)
97 2qby_A CDC6 homolog 1, cell di 97.8 7.8E-06 2.7E-10 81.3 4.2 52 312-371 18-69 (386)
98 2r2a_A Uncharacterized protein 97.2 0.00041 1.4E-08 62.7 5.4 20 349-368 7-26 (199)
99 2orw_A Thymidine kinase; TMTK, 96.8 0.002 7E-08 57.3 7.0 28 409-436 76-103 (184)
100 3upu_A ATP-dependent DNA helic 96.6 0.0047 1.6E-07 63.2 8.6 86 349-434 47-153 (459)
101 1qhx_A CPT, protein (chloramph 96.6 0.0012 4.1E-08 57.9 3.4 30 348-377 4-33 (178)
102 1kag_A SKI, shikimate kinase I 96.5 0.0014 4.9E-08 57.1 3.7 30 348-377 5-34 (173)
103 3trf_A Shikimate kinase, SK; a 96.5 0.0012 4E-08 58.4 3.1 31 348-378 6-36 (185)
104 1via_A Shikimate kinase; struc 96.4 0.0015 5.3E-08 57.2 3.2 30 349-378 6-35 (175)
105 3vaa_A Shikimate kinase, SK; s 96.4 0.0015 5.1E-08 58.7 3.2 31 348-378 26-56 (199)
106 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.2E-08 56.2 3.3 30 349-378 3-32 (173)
107 1zuh_A Shikimate kinase; alpha 96.3 0.0017 5.9E-08 56.4 3.0 31 348-378 8-38 (168)
108 3iij_A Coilin-interacting nucl 96.3 0.0022 7.5E-08 56.4 3.4 31 348-378 12-42 (180)
109 1y63_A LMAJ004144AAA protein; 96.2 0.0024 8.2E-08 56.6 3.4 31 348-378 11-42 (184)
110 2r8r_A Sensor protein; KDPD, P 96.2 0.0031 1.1E-07 57.7 4.0 26 345-370 4-29 (228)
111 3dl0_A Adenylate kinase; phosp 96.1 0.0028 9.5E-08 57.6 3.4 30 349-378 2-31 (216)
112 2iyv_A Shikimate kinase, SK; t 96.1 0.0026 8.8E-08 56.2 3.0 30 349-378 4-33 (184)
113 3lw7_A Adenylate kinase relate 96.1 0.0034 1.1E-07 54.4 3.5 29 349-378 3-31 (179)
114 1zp6_A Hypothetical protein AT 96.1 0.0029 9.9E-08 56.1 3.1 27 348-374 10-36 (191)
115 1aky_A Adenylate kinase; ATP:A 96.1 0.003 1E-07 57.6 3.3 31 348-378 5-35 (220)
116 1gvn_B Zeta; postsegregational 96.1 0.0066 2.2E-07 58.0 5.7 25 348-372 34-58 (287)
117 3sr0_A Adenylate kinase; phosp 96.1 0.0025 8.7E-08 57.8 2.6 31 349-379 2-32 (206)
118 1ly1_A Polynucleotide kinase; 96.0 0.0029 9.9E-08 55.4 2.9 27 349-375 4-31 (181)
119 2ze6_A Isopentenyl transferase 96.0 0.0033 1.1E-07 58.9 3.4 29 350-378 4-32 (253)
120 1e6c_A Shikimate kinase; phosp 96.0 0.0033 1.1E-07 54.6 3.2 29 349-377 4-32 (173)
121 2p5t_B PEZT; postsegregational 96.0 0.0057 2E-07 57.2 5.0 26 348-373 33-58 (253)
122 1knq_A Gluconate kinase; ALFA/ 96.0 0.0036 1.2E-07 54.7 3.1 30 348-377 9-38 (175)
123 3fb4_A Adenylate kinase; psych 96.0 0.0033 1.1E-07 57.0 3.0 30 349-378 2-31 (216)
124 3cm0_A Adenylate kinase; ATP-b 96.0 0.0036 1.2E-07 55.2 3.2 30 348-377 5-34 (186)
125 2rhm_A Putative kinase; P-loop 95.9 0.0034 1.2E-07 55.6 3.0 30 348-377 6-35 (193)
126 2cdn_A Adenylate kinase; phosp 95.9 0.0035 1.2E-07 56.2 3.1 31 348-378 21-51 (201)
127 3jvv_A Twitching mobility prot 95.9 0.01 3.6E-07 58.4 6.6 87 349-437 125-222 (356)
128 2vli_A Antibiotic resistance p 95.9 0.0033 1.1E-07 55.3 2.7 29 348-376 6-34 (183)
129 3t61_A Gluconokinase; PSI-biol 95.9 0.0037 1.3E-07 56.1 3.1 31 348-378 19-49 (202)
130 4eun_A Thermoresistant glucoki 95.9 0.0041 1.4E-07 55.8 3.3 30 348-377 30-59 (200)
131 1tev_A UMP-CMP kinase; ploop, 95.8 0.0048 1.6E-07 54.6 3.4 30 348-377 4-33 (196)
132 1ex7_A Guanylate kinase; subst 95.8 0.0064 2.2E-07 54.1 4.0 28 348-375 2-29 (186)
133 2pt5_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 53.5 3.0 29 349-377 2-30 (168)
134 3tlx_A Adenylate kinase 2; str 95.8 0.004 1.4E-07 57.9 2.8 31 348-378 30-60 (243)
135 2c95_A Adenylate kinase 1; tra 95.8 0.0044 1.5E-07 55.1 2.9 30 348-377 10-39 (196)
136 3umf_A Adenylate kinase; rossm 95.8 0.0034 1.1E-07 57.4 2.1 31 348-378 30-60 (217)
137 1kht_A Adenylate kinase; phosp 95.7 0.0044 1.5E-07 54.7 2.8 25 348-372 4-28 (192)
138 1ak2_A Adenylate kinase isoenz 95.7 0.0052 1.8E-07 56.6 3.3 31 348-378 17-47 (233)
139 1ye8_A Protein THEP1, hypothet 95.7 0.0044 1.5E-07 54.8 2.6 24 349-372 2-25 (178)
140 1zd8_A GTP:AMP phosphotransfer 95.7 0.0055 1.9E-07 56.1 3.2 31 348-378 8-38 (227)
141 2bwj_A Adenylate kinase 5; pho 95.6 0.0056 1.9E-07 54.5 3.1 30 348-377 13-42 (199)
142 1cke_A CK, MSSA, protein (cyti 95.6 0.0049 1.7E-07 56.3 2.7 31 348-378 6-36 (227)
143 3be4_A Adenylate kinase; malar 95.6 0.0057 1.9E-07 55.7 3.0 31 348-378 6-36 (217)
144 1qf9_A UMP/CMP kinase, protein 95.6 0.0058 2E-07 54.0 3.1 31 348-378 7-37 (194)
145 1w5s_A Origin recognition comp 95.6 0.0085 2.9E-07 59.8 4.6 51 312-371 20-76 (412)
146 1e4v_A Adenylate kinase; trans 95.6 0.0052 1.8E-07 55.8 2.7 30 349-378 2-31 (214)
147 3nwj_A ATSK2; P loop, shikimat 95.5 0.008 2.8E-07 56.2 3.9 31 348-378 49-79 (250)
148 1w36_D RECD, exodeoxyribonucle 95.5 0.013 4.5E-07 62.1 5.9 23 348-370 165-187 (608)
149 1ukz_A Uridylate kinase; trans 95.5 0.0082 2.8E-07 53.8 3.7 31 348-378 16-46 (203)
150 2xb4_A Adenylate kinase; ATP-b 95.5 0.0071 2.4E-07 55.3 3.2 30 349-378 2-31 (223)
151 2bdt_A BH3686; alpha-beta prot 95.5 0.0079 2.7E-07 53.3 3.4 29 349-377 4-32 (189)
152 2jaq_A Deoxyguanosine kinase; 95.4 0.0073 2.5E-07 53.9 3.2 28 349-376 2-29 (205)
153 1kgd_A CASK, peripheral plasma 95.4 0.0067 2.3E-07 53.5 2.8 25 348-372 6-30 (180)
154 1nks_A Adenylate kinase; therm 95.4 0.0044 1.5E-07 54.8 1.6 24 349-372 3-26 (194)
155 2qen_A Walker-type ATPase; unk 95.4 0.015 5E-07 56.5 5.4 45 314-372 12-56 (350)
156 1zak_A Adenylate kinase; ATP:A 95.4 0.0061 2.1E-07 55.6 2.4 29 348-376 6-34 (222)
157 2qor_A Guanylate kinase; phosp 95.3 0.008 2.7E-07 54.1 3.0 25 348-372 13-37 (204)
158 3tr0_A Guanylate kinase, GMP k 95.3 0.0077 2.6E-07 53.9 2.8 24 349-372 9-32 (205)
159 2fz4_A DNA repair protein RAD2 95.3 0.025 8.7E-07 52.2 6.4 25 349-373 110-134 (237)
160 3uie_A Adenylyl-sulfate kinase 95.2 0.007 2.4E-07 54.3 2.3 24 348-371 26-49 (200)
161 3crm_A TRNA delta(2)-isopenten 95.2 0.014 4.9E-07 56.4 4.5 30 349-378 7-36 (323)
162 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.6E-07 52.5 3.3 29 350-378 3-34 (197)
163 3r20_A Cytidylate kinase; stru 95.2 0.0088 3E-07 55.2 2.8 31 348-378 10-40 (233)
164 2pbr_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 52.3 3.3 28 350-377 3-33 (195)
165 2ewv_A Twitching motility prot 95.2 0.024 8.2E-07 56.2 6.1 25 348-372 137-161 (372)
166 2plr_A DTMP kinase, probable t 95.1 0.0081 2.8E-07 54.0 2.4 26 348-373 5-30 (213)
167 2j41_A Guanylate kinase; GMP, 95.1 0.0081 2.8E-07 53.8 2.4 24 348-371 7-30 (207)
168 2if2_A Dephospho-COA kinase; a 95.1 0.01 3.5E-07 53.1 3.1 28 349-377 3-30 (204)
169 2bbw_A Adenylate kinase 4, AK4 95.1 0.0076 2.6E-07 56.0 2.1 26 348-373 28-53 (246)
170 1jjv_A Dephospho-COA kinase; P 95.0 0.011 3.8E-07 53.1 3.0 28 349-377 4-31 (206)
171 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.012 4.2E-07 55.1 3.3 29 348-376 5-36 (260)
172 3tau_A Guanylate kinase, GMP k 95.0 0.0098 3.3E-07 53.8 2.5 26 348-373 9-34 (208)
173 1htw_A HI0065; nucleotide-bind 95.0 0.014 4.8E-07 50.4 3.3 25 348-372 34-58 (158)
174 2v54_A DTMP kinase, thymidylat 94.9 0.015 5E-07 52.0 3.4 30 348-377 5-35 (204)
175 3a8t_A Adenylate isopentenyltr 94.9 0.017 5.8E-07 56.2 4.0 31 348-378 41-71 (339)
176 1uf9_A TT1252 protein; P-loop, 94.9 0.013 4.3E-07 52.3 2.9 29 348-377 9-37 (203)
177 1lvg_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 52.8 2.6 25 348-372 5-29 (198)
178 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.012 4.2E-07 56.8 2.7 23 348-370 124-146 (331)
179 2pez_A Bifunctional 3'-phospho 94.8 0.017 5.7E-07 50.6 3.5 29 348-376 6-37 (179)
180 2b8t_A Thymidine kinase; deoxy 94.8 0.021 7.2E-07 52.3 4.2 21 349-369 14-34 (223)
181 3ake_A Cytidylate kinase; CMP 94.7 0.015 5E-07 52.1 3.0 30 349-378 4-33 (208)
182 3a00_A Guanylate kinase, GMP k 94.7 0.013 4.4E-07 51.9 2.5 23 350-372 4-26 (186)
183 1svm_A Large T antigen; AAA+ f 94.7 0.015 5.2E-07 57.7 3.1 28 348-375 170-197 (377)
184 4e22_A Cytidylate kinase; P-lo 94.7 0.015 5.2E-07 54.2 3.0 31 348-378 28-58 (252)
185 3ney_A 55 kDa erythrocyte memb 94.6 0.019 6.6E-07 51.4 3.4 26 348-373 20-45 (197)
186 2grj_A Dephospho-COA kinase; T 94.5 0.018 6.3E-07 51.4 3.1 31 348-378 13-43 (192)
187 3c8u_A Fructokinase; YP_612366 94.5 0.015 5.3E-07 52.3 2.5 25 348-372 23-47 (208)
188 2yvu_A Probable adenylyl-sulfa 94.5 0.015 5.2E-07 51.3 2.4 25 348-372 14-38 (186)
189 2wwf_A Thymidilate kinase, put 94.5 0.011 3.8E-07 53.1 1.5 25 348-372 11-35 (212)
190 1znw_A Guanylate kinase, GMP k 94.5 0.018 6E-07 51.9 2.9 25 348-372 21-45 (207)
191 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.028 9.6E-07 51.0 4.3 23 348-370 24-46 (235)
192 1nn5_A Similar to deoxythymidy 94.4 0.015 5E-07 52.4 2.3 25 348-372 10-34 (215)
193 3tqc_A Pantothenate kinase; bi 94.4 0.014 4.7E-07 56.6 2.1 25 348-372 93-117 (321)
194 3foz_A TRNA delta(2)-isopenten 94.4 0.03 1E-06 53.7 4.4 30 349-378 12-41 (316)
195 4a74_A DNA repair and recombin 94.4 0.03 1E-06 50.8 4.3 23 348-370 26-48 (231)
196 2ehv_A Hypothetical protein PH 94.3 0.02 6.8E-07 52.8 2.9 22 347-368 30-51 (251)
197 2qmh_A HPR kinase/phosphorylas 94.3 0.024 8.4E-07 50.7 3.3 25 348-372 35-59 (205)
198 1s96_A Guanylate kinase, GMP k 94.3 0.021 7.1E-07 52.2 2.9 25 348-372 17-41 (219)
199 1z6g_A Guanylate kinase; struc 94.3 0.021 7.2E-07 52.0 2.9 25 348-372 24-48 (218)
200 1n0w_A DNA repair protein RAD5 94.3 0.021 7.2E-07 52.4 2.9 22 348-369 25-46 (243)
201 4gp7_A Metallophosphoesterase; 94.2 0.016 5.5E-07 50.6 2.0 19 348-366 10-28 (171)
202 2qt1_A Nicotinamide riboside k 94.2 0.021 7.2E-07 51.3 2.8 24 348-371 22-45 (207)
203 1vht_A Dephospho-COA kinase; s 94.2 0.026 8.8E-07 51.1 3.4 30 348-378 5-34 (218)
204 2fna_A Conserved hypothetical 94.2 0.04 1.4E-06 53.4 4.9 45 313-373 12-56 (357)
205 3exa_A TRNA delta(2)-isopenten 94.1 0.032 1.1E-06 53.7 3.9 29 349-377 5-33 (322)
206 2h92_A Cytidylate kinase; ross 94.1 0.032 1.1E-06 50.5 3.7 31 348-378 4-34 (219)
207 3asz_A Uridine kinase; cytidin 94.0 0.019 6.4E-07 51.7 1.9 25 348-372 7-31 (211)
208 1upt_A ARL1, ADP-ribosylation 94.0 0.023 8E-07 48.6 2.5 24 346-369 6-29 (171)
209 1uj2_A Uridine-cytidine kinase 93.9 0.031 1.1E-06 52.0 3.4 27 348-374 23-49 (252)
210 3eph_A TRNA isopentenyltransfe 93.9 0.054 1.8E-06 53.9 5.2 29 349-377 4-32 (409)
211 2cvh_A DNA repair and recombin 93.9 0.026 9E-07 50.8 2.7 23 348-370 21-43 (220)
212 1q3t_A Cytidylate kinase; nucl 93.9 0.027 9.2E-07 51.8 2.8 31 348-378 17-47 (236)
213 1m7g_A Adenylylsulfate kinase; 93.8 0.02 6.9E-07 51.7 1.8 25 348-372 26-50 (211)
214 1ltq_A Polynucleotide kinase; 93.8 0.024 8.2E-07 54.1 2.4 23 349-371 4-26 (301)
215 3d3q_A TRNA delta(2)-isopenten 93.8 0.039 1.3E-06 53.7 3.9 30 349-378 9-38 (340)
216 2ga8_A Hypothetical 39.9 kDa p 93.7 0.021 7.2E-07 55.9 1.8 28 348-375 25-52 (359)
217 3b85_A Phosphate starvation-in 93.7 0.034 1.2E-06 50.3 3.1 22 349-370 24-45 (208)
218 3clv_A RAB5 protein, putative; 93.6 0.032 1.1E-06 49.1 2.8 24 347-370 7-30 (208)
219 2v9p_A Replication protein E1; 93.6 0.028 9.6E-07 54.0 2.5 24 348-371 127-150 (305)
220 2dr3_A UPF0273 protein PH0284; 93.6 0.031 1.1E-06 51.3 2.6 23 347-369 23-45 (247)
221 2gza_A Type IV secretion syste 93.5 0.033 1.1E-06 54.9 2.8 25 348-372 176-200 (361)
222 2i3b_A HCR-ntpase, human cance 93.4 0.034 1.2E-06 49.5 2.6 23 349-371 3-25 (189)
223 3oes_A GTPase rhebl1; small GT 93.4 0.028 9.7E-07 50.0 2.1 31 340-370 17-47 (201)
224 1pzn_A RAD51, DNA repair and r 93.4 0.057 1.9E-06 53.0 4.4 25 347-371 131-155 (349)
225 3lnc_A Guanylate kinase, GMP k 93.4 0.025 8.7E-07 51.7 1.8 25 348-372 28-53 (231)
226 3zvl_A Bifunctional polynucleo 93.3 0.03 1E-06 56.4 2.3 29 348-376 259-287 (416)
227 2eyu_A Twitching motility prot 93.3 0.035 1.2E-06 52.1 2.5 24 348-371 26-49 (261)
228 3vkw_A Replicase large subunit 93.2 0.019 6.6E-07 57.9 0.7 85 349-434 163-259 (446)
229 3sop_A Neuronal-specific septi 93.1 0.034 1.2E-06 52.5 2.1 24 348-371 3-26 (270)
230 2pcj_A ABC transporter, lipopr 93.1 0.033 1.1E-06 51.0 1.9 25 348-372 31-55 (224)
231 3tif_A Uncharacterized ABC tra 93.1 0.035 1.2E-06 51.3 2.1 26 347-372 31-56 (235)
232 3kta_A Chromosome segregation 93.0 0.041 1.4E-06 48.1 2.5 23 350-372 29-51 (182)
233 1gtv_A TMK, thymidylate kinase 93.0 0.023 7.7E-07 51.1 0.7 23 350-372 3-25 (214)
234 1z2a_A RAS-related protein RAB 93.0 0.041 1.4E-06 46.8 2.4 23 348-370 6-28 (168)
235 1kao_A RAP2A; GTP-binding prot 93.0 0.041 1.4E-06 46.6 2.4 23 348-370 4-26 (167)
236 1ek0_A Protein (GTP-binding pr 93.0 0.041 1.4E-06 46.8 2.3 23 348-370 4-26 (170)
237 2f9l_A RAB11B, member RAS onco 93.0 0.041 1.4E-06 48.9 2.4 24 348-371 6-29 (199)
238 3q85_A GTP-binding protein REM 93.0 0.04 1.4E-06 47.1 2.2 22 348-369 3-24 (169)
239 2zej_A Dardarin, leucine-rich 93.0 0.034 1.2E-06 48.7 1.8 23 348-370 3-25 (184)
240 4b3f_X DNA-binding protein smu 92.9 0.056 1.9E-06 57.7 3.8 36 320-369 192-228 (646)
241 4eaq_A DTMP kinase, thymidylat 92.9 0.043 1.5E-06 50.4 2.4 25 348-372 27-51 (229)
242 2onk_A Molybdate/tungstate ABC 92.9 0.045 1.6E-06 50.6 2.6 28 344-372 22-49 (240)
243 2dyk_A GTP-binding protein; GT 92.9 0.045 1.5E-06 46.2 2.4 22 349-370 3-24 (161)
244 1nrj_B SR-beta, signal recogni 92.9 0.045 1.6E-06 49.2 2.5 25 347-371 12-36 (218)
245 1u8z_A RAS-related protein RAL 92.8 0.045 1.5E-06 46.4 2.4 23 348-370 5-27 (168)
246 1ky3_A GTP-binding protein YPT 92.8 0.045 1.6E-06 47.2 2.4 24 347-370 8-31 (182)
247 2zts_A Putative uncharacterize 92.8 0.052 1.8E-06 49.9 2.9 22 347-368 30-51 (251)
248 2nzj_A GTP-binding protein REM 92.8 0.044 1.5E-06 47.0 2.3 22 348-369 5-26 (175)
249 2wjg_A FEOB, ferrous iron tran 92.8 0.048 1.6E-06 47.6 2.5 23 348-370 8-30 (188)
250 1sgw_A Putative ABC transporte 92.8 0.044 1.5E-06 49.8 2.3 25 348-372 36-60 (214)
251 3lxx_A GTPase IMAP family memb 92.8 0.25 8.6E-06 45.1 7.6 24 347-370 29-52 (239)
252 1z08_A RAS-related protein RAB 92.8 0.047 1.6E-06 46.6 2.4 24 347-370 6-29 (170)
253 1zd9_A ADP-ribosylation factor 92.8 0.046 1.6E-06 48.0 2.4 27 344-370 19-45 (188)
254 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.049 1.7E-06 46.9 2.5 24 347-370 7-30 (177)
255 2oap_1 GSPE-2, type II secreti 92.7 0.069 2.4E-06 55.2 4.0 26 348-373 261-286 (511)
256 2jeo_A Uridine-cytidine kinase 92.7 0.045 1.5E-06 50.6 2.4 26 348-373 26-51 (245)
257 3gmt_A Adenylate kinase; ssgci 92.7 0.041 1.4E-06 50.5 2.0 30 349-378 10-39 (230)
258 2erx_A GTP-binding protein DI- 92.7 0.047 1.6E-06 46.6 2.3 22 348-369 4-25 (172)
259 1z0j_A RAB-22, RAS-related pro 92.7 0.049 1.7E-06 46.4 2.4 23 348-370 7-29 (170)
260 1oix_A RAS-related protein RAB 92.7 0.044 1.5E-06 48.4 2.1 24 348-371 30-53 (191)
261 1r2q_A RAS-related protein RAB 92.6 0.051 1.7E-06 46.2 2.5 23 347-369 6-28 (170)
262 1rz3_A Hypothetical protein rb 92.6 0.046 1.6E-06 48.9 2.3 24 348-371 23-46 (201)
263 1g6h_A High-affinity branched- 92.6 0.048 1.6E-06 51.0 2.4 27 346-372 32-58 (257)
264 1vma_A Cell division protein F 92.6 0.17 5.8E-06 48.6 6.4 25 347-371 104-128 (306)
265 2f6r_A COA synthase, bifunctio 92.6 0.053 1.8E-06 51.4 2.7 29 348-377 76-104 (281)
266 1m7b_A RND3/RHOE small GTP-bin 92.6 0.045 1.6E-06 47.8 2.1 23 348-370 8-30 (184)
267 2wji_A Ferrous iron transport 92.6 0.048 1.6E-06 46.8 2.2 23 348-370 4-26 (165)
268 2cbz_A Multidrug resistance-as 92.6 0.037 1.3E-06 51.1 1.6 25 348-372 32-56 (237)
269 2ce2_X GTPase HRAS; signaling 92.5 0.046 1.6E-06 46.2 2.0 23 348-370 4-26 (166)
270 3t1o_A Gliding protein MGLA; G 92.5 0.056 1.9E-06 47.3 2.6 26 347-372 14-39 (198)
271 3hr8_A Protein RECA; alpha and 92.5 0.051 1.8E-06 53.4 2.6 32 348-379 62-97 (356)
272 2ff7_A Alpha-hemolysin translo 92.5 0.047 1.6E-06 50.8 2.2 26 347-372 35-60 (247)
273 1c1y_A RAS-related protein RAP 92.5 0.052 1.8E-06 46.1 2.3 22 348-369 4-25 (167)
274 1mv5_A LMRA, multidrug resista 92.5 0.045 1.5E-06 50.7 2.1 26 347-372 28-53 (243)
275 2qi9_C Vitamin B12 import ATP- 92.5 0.048 1.6E-06 50.8 2.2 26 347-372 26-51 (249)
276 2pze_A Cystic fibrosis transme 92.5 0.049 1.7E-06 50.0 2.2 26 347-372 34-59 (229)
277 3q72_A GTP-binding protein RAD 92.5 0.046 1.6E-06 46.5 1.9 21 348-368 3-23 (166)
278 1b0u_A Histidine permease; ABC 92.5 0.047 1.6E-06 51.3 2.1 25 348-372 33-57 (262)
279 2hxs_A RAB-26, RAS-related pro 92.4 0.054 1.8E-06 46.7 2.4 23 348-370 7-29 (178)
280 2gj8_A MNME, tRNA modification 92.4 0.047 1.6E-06 47.3 2.0 23 348-370 5-27 (172)
281 1r8s_A ADP-ribosylation factor 92.4 0.055 1.9E-06 45.9 2.4 22 349-370 2-23 (164)
282 1w4r_A Thymidine kinase; type 92.4 0.065 2.2E-06 47.8 2.9 21 350-370 23-44 (195)
283 2ged_A SR-beta, signal recogni 92.4 0.058 2E-06 47.3 2.6 25 347-371 48-72 (193)
284 3aez_A Pantothenate kinase; tr 92.4 0.054 1.9E-06 52.2 2.6 25 348-372 91-115 (312)
285 1g16_A RAS-related protein SEC 92.4 0.05 1.7E-06 46.3 2.1 23 348-370 4-26 (170)
286 3lxw_A GTPase IMAP family memb 92.3 0.38 1.3E-05 44.4 8.2 24 347-370 21-44 (247)
287 2z43_A DNA repair and recombin 92.3 0.058 2E-06 52.3 2.6 24 347-370 107-130 (324)
288 3fdi_A Uncharacterized protein 92.3 0.073 2.5E-06 47.8 3.1 29 349-377 8-36 (201)
289 3gfo_A Cobalt import ATP-bindi 92.2 0.053 1.8E-06 51.3 2.2 25 348-372 35-59 (275)
290 1ji0_A ABC transporter; ATP bi 92.2 0.053 1.8E-06 50.2 2.2 25 348-372 33-57 (240)
291 3e1s_A Exodeoxyribonuclease V, 92.2 0.076 2.6E-06 55.7 3.6 87 348-434 205-304 (574)
292 3bc1_A RAS-related protein RAB 92.2 0.058 2E-06 47.0 2.4 23 347-369 11-33 (195)
293 2lkc_A Translation initiation 92.2 0.062 2.1E-06 46.3 2.5 23 347-369 8-30 (178)
294 2v6i_A RNA helicase; membrane, 92.2 0.38 1.3E-05 48.4 8.7 17 348-364 3-19 (431)
295 1nlf_A Regulatory protein REPA 92.2 0.056 1.9E-06 51.0 2.3 23 348-370 31-53 (279)
296 1lw7_A Transcriptional regulat 92.2 0.066 2.3E-06 52.8 2.9 26 348-373 171-196 (365)
297 4g1u_C Hemin import ATP-bindin 92.1 0.054 1.8E-06 51.0 2.1 25 347-371 37-61 (266)
298 3tqf_A HPR(Ser) kinase; transf 92.1 0.058 2E-06 47.1 2.1 23 348-370 17-39 (181)
299 3b9q_A Chloroplast SRP recepto 92.1 0.15 5E-06 48.9 5.2 26 346-371 99-124 (302)
300 1cr0_A DNA primase/helicase; R 92.1 0.06 2.1E-06 51.2 2.5 23 348-370 36-58 (296)
301 1v5w_A DMC1, meiotic recombina 92.1 0.066 2.3E-06 52.3 2.8 23 348-370 123-145 (343)
302 2ixe_A Antigen peptide transpo 92.1 0.055 1.9E-06 51.1 2.1 25 348-372 46-70 (271)
303 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.073 2.5E-06 51.7 3.0 25 348-372 172-196 (330)
304 2olj_A Amino acid ABC transpor 92.0 0.057 1.9E-06 50.7 2.1 25 348-372 51-75 (263)
305 3ihw_A Centg3; RAS, centaurin, 92.0 0.067 2.3E-06 46.9 2.5 23 347-369 20-42 (184)
306 2ihy_A ABC transporter, ATP-bi 92.0 0.059 2E-06 51.1 2.2 25 348-372 48-72 (279)
307 1z0f_A RAB14, member RAS oncog 92.0 0.065 2.2E-06 46.1 2.4 24 347-370 15-38 (179)
308 3fvq_A Fe(3+) IONS import ATP- 92.0 0.054 1.9E-06 53.2 2.0 25 348-372 31-55 (359)
309 2ghi_A Transport protein; mult 92.0 0.055 1.9E-06 50.7 2.0 25 348-372 47-71 (260)
310 2bov_A RAla, RAS-related prote 92.0 0.065 2.2E-06 47.4 2.4 24 347-370 14-37 (206)
311 2g6b_A RAS-related protein RAB 92.0 0.065 2.2E-06 46.2 2.3 24 347-370 10-33 (180)
312 4dsu_A GTPase KRAS, isoform 2B 92.0 0.067 2.3E-06 46.5 2.4 23 348-370 5-27 (189)
313 2nq2_C Hypothetical ABC transp 92.0 0.06 2E-06 50.2 2.2 25 348-372 32-56 (253)
314 1z6t_A APAF-1, apoptotic prote 91.9 0.11 3.9E-06 54.4 4.5 47 313-369 123-169 (591)
315 3tw8_B RAS-related protein RAB 91.9 0.062 2.1E-06 46.3 2.1 23 347-369 9-31 (181)
316 2efe_B Small GTP-binding prote 91.9 0.069 2.3E-06 46.1 2.4 24 347-370 12-35 (181)
317 2oil_A CATX-8, RAS-related pro 91.9 0.068 2.3E-06 46.9 2.4 24 347-370 25-48 (193)
318 2i1q_A DNA repair and recombin 91.9 0.068 2.3E-06 51.6 2.6 25 346-370 97-121 (322)
319 1x3s_A RAS-related protein RAB 91.9 0.082 2.8E-06 46.2 2.9 24 347-370 15-38 (195)
320 1z06_A RAS-related protein RAB 91.9 0.069 2.4E-06 46.7 2.4 23 347-369 20-42 (189)
321 1rj9_A FTSY, signal recognitio 91.9 0.068 2.3E-06 51.3 2.5 24 348-371 103-126 (304)
322 1vpl_A ABC transporter, ATP-bi 91.9 0.061 2.1E-06 50.3 2.1 25 348-372 42-66 (256)
323 3io5_A Recombination and repai 91.8 0.065 2.2E-06 51.6 2.3 35 345-381 28-68 (333)
324 2yz2_A Putative ABC transporte 91.8 0.061 2.1E-06 50.6 2.1 25 348-372 34-58 (266)
325 2d2e_A SUFC protein; ABC-ATPas 91.8 0.075 2.6E-06 49.5 2.6 24 347-370 29-52 (250)
326 1z47_A CYSA, putative ABC-tran 91.7 0.075 2.6E-06 52.1 2.7 25 348-372 42-66 (355)
327 3lda_A DNA repair protein RAD5 91.7 0.072 2.4E-06 53.2 2.6 24 345-368 176-199 (400)
328 3cph_A RAS-related protein SEC 91.7 0.072 2.5E-06 47.5 2.4 25 345-369 18-42 (213)
329 1xx6_A Thymidine kinase; NESG, 91.7 0.32 1.1E-05 43.2 6.6 26 410-435 82-107 (191)
330 3t5g_A GTP-binding protein RHE 91.7 0.066 2.3E-06 46.3 2.1 23 347-369 6-28 (181)
331 1ksh_A ARF-like protein 2; sma 91.7 0.068 2.3E-06 46.5 2.1 23 347-369 18-40 (186)
332 2fn4_A P23, RAS-related protei 91.7 0.068 2.3E-06 46.0 2.1 23 348-370 10-32 (181)
333 2y8e_A RAB-protein 6, GH09086P 91.7 0.063 2.2E-06 46.1 1.9 22 348-369 15-36 (179)
334 3kkq_A RAS-related protein M-R 91.6 0.072 2.4E-06 46.2 2.2 24 347-370 18-41 (183)
335 1sq5_A Pantothenate kinase; P- 91.6 0.066 2.3E-06 51.5 2.2 25 348-372 81-105 (308)
336 3con_A GTPase NRAS; structural 91.6 0.075 2.6E-06 46.4 2.3 23 348-370 22-44 (190)
337 3d31_A Sulfate/molybdate ABC t 91.6 0.07 2.4E-06 52.3 2.3 25 348-372 27-51 (348)
338 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.076 2.6E-06 46.0 2.3 22 348-369 6-27 (186)
339 3c5c_A RAS-like protein 12; GD 91.6 0.078 2.7E-06 46.5 2.4 24 347-370 21-44 (187)
340 2zr9_A Protein RECA, recombina 91.6 0.077 2.6E-06 52.0 2.6 23 348-370 62-84 (349)
341 2it1_A 362AA long hypothetical 91.6 0.079 2.7E-06 52.2 2.6 25 348-372 30-54 (362)
342 3reg_A RHO-like small GTPase; 91.6 0.077 2.6E-06 46.7 2.4 24 347-370 23-46 (194)
343 3rlf_A Maltose/maltodextrin im 91.6 0.079 2.7E-06 52.4 2.6 25 348-372 30-54 (381)
344 1odf_A YGR205W, hypothetical 3 91.5 0.073 2.5E-06 50.7 2.3 25 348-372 32-56 (290)
345 2atv_A RERG, RAS-like estrogen 91.5 0.081 2.8E-06 46.6 2.5 24 347-370 28-51 (196)
346 2iwr_A Centaurin gamma 1; ANK 91.5 0.071 2.4E-06 46.0 2.1 23 348-370 8-30 (178)
347 1m2o_B GTP-binding protein SAR 91.5 0.071 2.4E-06 46.9 2.1 22 348-369 24-45 (190)
348 3cmu_A Protein RECA, recombina 91.5 0.078 2.7E-06 62.8 3.0 28 344-371 1424-1451(2050)
349 2yyz_A Sugar ABC transporter, 91.5 0.079 2.7E-06 52.1 2.6 25 348-372 30-54 (359)
350 2a9k_A RAS-related protein RAL 91.5 0.079 2.7E-06 45.9 2.4 24 347-370 18-41 (187)
351 1v43_A Sugar-binding transport 91.5 0.081 2.8E-06 52.3 2.6 25 348-372 38-62 (372)
352 2gf0_A GTP-binding protein DI- 91.5 0.076 2.6E-06 46.7 2.3 23 347-369 8-30 (199)
353 2f1r_A Molybdopterin-guanine d 91.5 0.052 1.8E-06 47.4 1.1 23 350-372 5-27 (171)
354 3bwd_D RAC-like GTP-binding pr 91.5 0.085 2.9E-06 45.6 2.5 24 347-370 8-31 (182)
355 2zu0_C Probable ATP-dependent 91.4 0.084 2.9E-06 49.7 2.6 23 348-370 47-69 (267)
356 1vg8_A RAS-related protein RAB 91.4 0.081 2.8E-06 46.9 2.4 24 347-370 8-31 (207)
357 1g29_1 MALK, maltose transport 91.4 0.085 2.9E-06 52.2 2.7 25 348-372 30-54 (372)
358 2qm8_A GTPase/ATPase; G protei 91.4 0.11 3.8E-06 50.6 3.5 24 348-371 56-79 (337)
359 2bme_A RAB4A, RAS-related prot 91.4 0.075 2.6E-06 46.2 2.1 24 347-370 10-33 (186)
360 2cxx_A Probable GTP-binding pr 91.4 0.068 2.3E-06 46.6 1.8 22 349-370 3-24 (190)
361 2gf9_A RAS-related protein RAB 91.3 0.084 2.9E-06 46.2 2.4 23 348-370 23-45 (189)
362 1svi_A GTP-binding protein YSX 91.3 0.072 2.5E-06 46.7 1.9 24 347-370 23-46 (195)
363 2p5s_A RAS and EF-hand domain 91.3 0.088 3E-06 46.6 2.4 24 347-370 28-51 (199)
364 2yhs_A FTSY, cell division pro 91.2 0.2 6.8E-06 51.2 5.2 27 345-371 291-317 (503)
365 3pqc_A Probable GTP-binding pr 91.2 0.09 3.1E-06 45.9 2.4 24 347-370 23-46 (195)
366 2q3h_A RAS homolog gene family 91.2 0.086 2.9E-06 46.6 2.3 25 345-369 18-42 (201)
367 2og2_A Putative signal recogni 91.2 0.2 7E-06 49.1 5.2 26 346-371 156-181 (359)
368 1p9r_A General secretion pathw 91.2 0.086 3E-06 53.0 2.5 24 349-372 169-192 (418)
369 1moz_A ARL1, ADP-ribosylation 91.2 0.053 1.8E-06 47.0 0.9 22 347-368 18-39 (183)
370 3tkl_A RAS-related protein RAB 91.1 0.09 3.1E-06 46.1 2.4 24 347-370 16-39 (196)
371 2a5y_B CED-4; apoptosis; HET: 91.1 0.11 3.8E-06 54.1 3.4 44 317-369 131-174 (549)
372 1zj6_A ADP-ribosylation factor 91.1 0.078 2.7E-06 46.3 1.9 22 348-369 17-38 (187)
373 1fzq_A ADP-ribosylation factor 91.1 0.077 2.6E-06 46.3 1.8 23 348-370 17-39 (181)
374 3e70_C DPA, signal recognition 91.0 0.094 3.2E-06 50.9 2.6 24 348-371 130-153 (328)
375 1zbd_A Rabphilin-3A; G protein 91.0 0.089 3E-06 46.6 2.2 23 348-370 9-31 (203)
376 2xtp_A GTPase IMAP family memb 91.0 0.49 1.7E-05 43.7 7.5 23 347-369 22-44 (260)
377 2fg5_A RAB-22B, RAS-related pr 91.0 0.087 3E-06 46.3 2.1 24 347-370 23-46 (192)
378 1qhl_A Protein (cell division 91.0 0.062 2.1E-06 49.3 1.1 23 350-372 30-52 (227)
379 2a5j_A RAS-related protein RAB 91.0 0.096 3.3E-06 45.9 2.4 24 347-370 21-44 (191)
380 2fh5_B SR-beta, signal recogni 90.9 0.097 3.3E-06 46.8 2.4 24 347-370 7-30 (214)
381 3nh6_A ATP-binding cassette SU 90.9 0.075 2.6E-06 51.1 1.7 28 345-372 78-105 (306)
382 2b6h_A ADP-ribosylation factor 90.8 0.081 2.8E-06 46.7 1.7 23 347-369 29-51 (192)
383 2pjz_A Hypothetical protein ST 90.8 0.074 2.5E-06 49.9 1.5 24 348-371 31-54 (263)
384 3dz8_A RAS-related protein RAB 90.8 0.091 3.1E-06 46.1 2.1 26 346-371 22-47 (191)
385 2bcg_Y Protein YP2, GTP-bindin 90.8 0.091 3.1E-06 46.7 2.1 23 348-370 9-31 (206)
386 3cmw_A Protein RECA, recombina 90.8 0.093 3.2E-06 61.4 2.6 24 348-371 1083-1106(1706)
387 1oxx_K GLCV, glucose, ABC tran 90.7 0.075 2.6E-06 52.2 1.5 25 348-372 32-56 (353)
388 1xjc_A MOBB protein homolog; s 90.7 0.11 3.7E-06 45.3 2.3 22 350-371 7-28 (169)
389 2h17_A ADP-ribosylation factor 90.7 0.08 2.7E-06 46.0 1.5 24 347-370 21-44 (181)
390 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.11 3.7E-06 44.2 2.3 22 350-371 26-47 (149)
391 1pui_A ENGB, probable GTP-bind 90.6 0.056 1.9E-06 48.2 0.5 23 348-370 27-49 (210)
392 1np6_A Molybdopterin-guanine d 90.6 0.12 4E-06 45.3 2.6 23 349-371 8-30 (174)
393 1u94_A RECA protein, recombina 90.6 0.12 4.1E-06 50.8 2.9 23 348-370 64-86 (356)
394 2bbs_A Cystic fibrosis transme 90.5 0.085 2.9E-06 50.3 1.7 25 348-372 65-89 (290)
395 1c9k_A COBU, adenosylcobinamid 90.5 0.12 4.1E-06 45.4 2.6 28 350-377 2-29 (180)
396 3cr8_A Sulfate adenylyltranfer 90.5 0.081 2.8E-06 55.1 1.7 25 348-372 370-394 (552)
397 2qag_B Septin-6, protein NEDD5 90.5 0.087 3E-06 52.9 1.8 22 349-370 44-65 (427)
398 2cjw_A GTP-binding protein GEM 90.5 0.11 3.6E-06 46.0 2.2 22 348-369 7-28 (192)
399 3gd7_A Fusion complex of cysti 90.5 0.088 3E-06 52.4 1.8 25 348-372 48-72 (390)
400 2ew1_A RAS-related protein RAB 90.5 0.1 3.5E-06 46.6 2.1 23 348-370 27-49 (201)
401 1x6v_B Bifunctional 3'-phospho 90.4 0.14 4.7E-06 54.1 3.3 31 348-378 53-86 (630)
402 1gwn_A RHO-related GTP-binding 90.4 0.1 3.5E-06 46.7 2.1 23 348-370 29-51 (205)
403 2il1_A RAB12; G-protein, GDP, 90.4 0.1 3.5E-06 45.9 2.0 23 347-369 26-48 (192)
404 3cbq_A GTP-binding protein REM 90.4 0.087 3E-06 46.6 1.5 22 347-368 23-44 (195)
405 2fu5_C RAS-related protein RAB 90.4 0.071 2.4E-06 46.2 0.9 22 348-369 9-30 (183)
406 3h1t_A Type I site-specific re 90.3 0.89 3E-05 47.6 9.6 21 348-368 199-219 (590)
407 3llu_A RAS-related GTP-binding 90.3 0.11 3.6E-06 45.9 2.0 23 347-369 20-42 (196)
408 2axn_A 6-phosphofructo-2-kinas 90.3 0.11 3.7E-06 53.9 2.3 24 348-371 36-59 (520)
409 2f7s_A C25KG, RAS-related prot 90.2 0.12 4E-06 46.4 2.3 24 347-370 25-48 (217)
410 3hdt_A Putative kinase; struct 90.2 0.14 4.9E-06 46.7 2.9 30 348-377 15-44 (223)
411 2o52_A RAS-related protein RAB 90.2 0.11 3.6E-06 46.2 1.9 23 347-369 25-47 (200)
412 3q3j_B RHO-related GTP-binding 90.1 0.13 4.3E-06 46.3 2.4 24 347-370 27-50 (214)
413 1bif_A 6-phosphofructo-2-kinas 90.1 0.12 4.1E-06 52.8 2.5 25 348-372 40-64 (469)
414 4bas_A ADP-ribosylation factor 90.1 0.12 3.9E-06 45.5 2.1 23 347-369 17-39 (199)
415 2j0v_A RAC-like GTP-binding pr 90.1 0.13 4.6E-06 45.8 2.5 24 347-370 9-32 (212)
416 1jr3_D DNA polymerase III, del 90.1 0.27 9.2E-06 47.7 4.9 79 348-435 19-103 (343)
417 1nij_A Hypothetical protein YJ 90.1 0.29 9.9E-06 47.1 5.1 22 350-371 7-28 (318)
418 2qnr_A Septin-2, protein NEDD5 90.0 0.094 3.2E-06 50.2 1.5 23 348-370 19-41 (301)
419 2fv8_A H6, RHO-related GTP-bin 90.0 0.12 4E-06 46.1 2.1 23 348-370 26-48 (207)
420 2vp4_A Deoxynucleoside kinase; 90.0 0.13 4.5E-06 46.9 2.5 25 348-372 21-45 (230)
421 2atx_A Small GTP binding prote 90.0 0.12 4.1E-06 45.3 2.1 24 347-370 18-41 (194)
422 3k53_A Ferrous iron transport 89.9 0.11 3.8E-06 48.7 1.9 23 348-370 4-26 (271)
423 2j1l_A RHO-related GTP-binding 89.9 0.11 3.9E-06 46.5 2.0 22 348-369 35-56 (214)
424 2h57_A ADP-ribosylation factor 89.9 0.095 3.2E-06 45.9 1.4 24 347-370 21-44 (190)
425 1f6b_A SAR1; gtpases, N-termin 89.9 0.096 3.3E-06 46.5 1.4 22 348-369 26-47 (198)
426 2gco_A H9, RHO-related GTP-bin 89.9 0.12 4.1E-06 45.8 2.0 24 347-370 25-48 (201)
427 1a7j_A Phosphoribulokinase; tr 89.8 0.075 2.6E-06 50.6 0.7 24 349-372 7-30 (290)
428 2gmg_A Hypothetical protein PF 89.8 0.16 5.6E-06 39.8 2.4 30 146-188 65-94 (105)
429 2gk6_A Regulator of nonsense t 89.8 0.22 7.6E-06 52.8 4.3 21 349-369 197-217 (624)
430 2hup_A RAS-related protein RAB 89.8 0.13 4.4E-06 45.7 2.1 24 347-370 29-52 (201)
431 4dkx_A RAS-related protein RAB 89.7 0.14 4.8E-06 46.4 2.4 22 348-369 14-35 (216)
432 4gzl_A RAS-related C3 botulinu 89.7 0.13 4.5E-06 45.7 2.1 24 347-370 30-53 (204)
433 2npi_A Protein CLP1; CLP1-PCF1 89.6 0.12 4.2E-06 52.5 2.1 24 348-371 139-162 (460)
434 1g8f_A Sulfate adenylyltransfe 89.6 0.14 4.8E-06 52.7 2.6 26 348-373 396-421 (511)
435 3tui_C Methionine import ATP-b 89.6 0.15 5.1E-06 50.1 2.6 25 348-372 55-79 (366)
436 2x77_A ADP-ribosylation factor 89.6 0.084 2.9E-06 46.1 0.8 22 347-368 22-43 (189)
437 2ocp_A DGK, deoxyguanosine kin 89.5 0.2 6.9E-06 45.9 3.3 25 348-372 3-27 (241)
438 2g3y_A GTP-binding protein GEM 89.5 0.15 5.1E-06 46.0 2.3 22 348-369 38-59 (211)
439 4ag6_A VIRB4 ATPase, type IV s 89.5 0.15 5.2E-06 50.6 2.6 25 346-370 34-58 (392)
440 2px0_A Flagellar biosynthesis 89.5 0.13 4.4E-06 49.2 2.0 24 348-371 106-129 (296)
441 1tq4_A IIGP1, interferon-induc 89.4 0.22 7.6E-06 49.8 3.8 23 349-371 71-93 (413)
442 3e2i_A Thymidine kinase; Zn-bi 89.4 0.52 1.8E-05 42.6 5.8 82 350-436 31-128 (219)
443 3bh0_A DNAB-like replicative h 89.4 0.2 6.8E-06 48.3 3.3 22 348-369 69-90 (315)
444 3cpj_B GTP-binding protein YPT 89.4 0.16 5.3E-06 45.9 2.4 23 348-370 14-36 (223)
445 3a1s_A Iron(II) transport prot 89.4 0.15 5E-06 47.6 2.3 22 348-369 6-27 (258)
446 2obl_A ESCN; ATPase, hydrolase 89.3 0.25 8.4E-06 48.3 3.9 26 348-373 72-97 (347)
447 1p5z_B DCK, deoxycytidine kina 89.3 0.12 4.2E-06 48.1 1.7 25 348-372 25-49 (263)
448 1yks_A Genome polyprotein [con 89.2 0.65 2.2E-05 46.8 7.2 18 347-364 8-25 (440)
449 2dpy_A FLII, flagellum-specifi 89.2 0.23 8E-06 50.1 3.7 26 348-373 158-183 (438)
450 3lv8_A DTMP kinase, thymidylat 89.0 0.15 5.2E-06 46.9 2.1 24 348-371 28-51 (236)
451 1u0l_A Probable GTPase ENGC; p 89.0 0.13 4.5E-06 49.2 1.6 24 349-372 171-194 (301)
452 1tf7_A KAIC; homohexamer, hexa 88.9 0.19 6.4E-06 52.1 2.9 25 347-371 281-305 (525)
453 2qag_C Septin-7; cell cycle, c 88.8 0.14 4.8E-06 51.4 1.8 24 348-371 32-55 (418)
454 2hf9_A Probable hydrogenase ni 88.8 0.16 5.5E-06 45.8 2.1 24 348-371 39-62 (226)
455 2yc2_C IFT27, small RAB-relate 88.8 0.091 3.1E-06 46.5 0.4 24 347-370 20-43 (208)
456 2wjy_A Regulator of nonsense t 88.8 0.24 8.1E-06 54.1 3.7 21 349-369 373-393 (800)
457 2qu8_A Putative nucleolar GTP- 88.8 0.17 5.7E-06 46.0 2.1 22 348-369 30-51 (228)
458 4edh_A DTMP kinase, thymidylat 88.7 0.18 6E-06 45.7 2.3 25 348-372 7-31 (213)
459 2rcn_A Probable GTPase ENGC; Y 88.7 0.17 5.8E-06 49.6 2.3 24 349-372 217-240 (358)
460 2wsm_A Hydrogenase expression/ 88.7 0.17 5.8E-06 45.5 2.1 24 348-371 31-54 (221)
461 3b1v_A Ferrous iron uptake tra 88.6 0.18 6.1E-06 47.5 2.3 23 348-370 4-26 (272)
462 1xp8_A RECA protein, recombina 88.6 0.19 6.6E-06 49.5 2.6 23 348-370 75-97 (366)
463 3r7w_A Gtpase1, GTP-binding pr 88.4 0.18 6.3E-06 48.2 2.3 22 348-369 4-25 (307)
464 3v9p_A DTMP kinase, thymidylat 88.3 0.18 6E-06 46.2 1.9 24 348-371 26-49 (227)
465 3ice_A Transcription terminati 88.2 0.23 8E-06 49.0 2.9 24 348-371 175-198 (422)
466 2yv5_A YJEQ protein; hydrolase 88.1 0.2 6.7E-06 48.0 2.2 23 349-372 167-189 (302)
467 2j9r_A Thymidine kinase; TK1, 87.9 0.95 3.2E-05 40.8 6.5 26 410-435 102-127 (214)
468 2kdx_A HYPA, hydrogenase/ureas 87.8 0.68 2.3E-05 37.6 5.0 44 138-195 63-107 (119)
469 3llm_A ATP-dependent RNA helic 87.8 0.3 1E-05 44.6 3.2 21 348-368 77-97 (235)
470 3t5d_A Septin-7; GTP-binding p 87.8 0.18 6.3E-06 47.3 1.8 21 348-368 9-29 (274)
471 3a43_A HYPD, hydrogenase nicke 87.8 1.2 4E-05 37.3 6.6 57 139-200 61-129 (139)
472 3th5_A RAS-related C3 botulinu 87.6 0.1 3.5E-06 46.3 0.0 23 347-369 30-52 (204)
473 2r6a_A DNAB helicase, replicat 87.7 0.29 9.8E-06 49.7 3.3 23 348-370 204-226 (454)
474 4i1u_A Dephospho-COA kinase; s 87.7 0.34 1.1E-05 43.7 3.4 28 350-378 12-39 (210)
475 3iby_A Ferrous iron transport 87.5 0.2 7E-06 46.6 1.9 22 349-370 3-24 (256)
476 3qks_A DNA double-strand break 87.5 0.24 8.1E-06 44.4 2.3 23 350-372 26-48 (203)
477 1m8p_A Sulfate adenylyltransfe 87.5 0.25 8.5E-06 51.8 2.8 25 348-372 397-421 (573)
478 3kl4_A SRP54, signal recogniti 87.4 0.23 7.9E-06 50.0 2.4 25 347-371 97-121 (433)
479 2v3c_C SRP54, signal recogniti 87.4 0.23 7.7E-06 50.1 2.3 24 348-371 100-123 (432)
480 3tmk_A Thymidylate kinase; pho 87.3 0.23 7.9E-06 45.0 2.1 26 348-373 6-31 (216)
481 1tf7_A KAIC; homohexamer, hexa 87.3 0.25 8.6E-06 51.2 2.6 32 348-379 40-76 (525)
482 3euj_A Chromosome partition pr 87.1 0.26 8.9E-06 50.3 2.5 25 348-372 30-54 (483)
483 2www_A Methylmalonic aciduria 87.1 0.26 9E-06 48.1 2.5 23 348-370 75-97 (349)
484 2p67_A LAO/AO transport system 87.0 0.33 1.1E-05 47.2 3.2 23 348-370 57-79 (341)
485 3i8s_A Ferrous iron transport 86.8 0.24 8.3E-06 46.5 2.0 23 348-370 4-26 (274)
486 2q6t_A DNAB replication FORK h 86.7 0.31 1.1E-05 49.3 2.9 23 348-370 201-223 (444)
487 4djt_A GTP-binding nuclear pro 86.5 0.12 4.1E-06 46.3 -0.3 23 347-369 11-33 (218)
488 1knx_A Probable HPR(Ser) kinas 86.5 0.25 8.5E-06 47.4 1.9 22 348-369 148-169 (312)
489 4dhe_A Probable GTP-binding pr 86.5 0.18 6.1E-06 45.3 0.8 24 347-370 29-52 (223)
490 2qag_A Septin-2, protein NEDD5 86.4 0.27 9.3E-06 48.3 2.2 22 348-369 38-59 (361)
491 1ega_A Protein (GTP-binding pr 86.3 0.28 9.5E-06 46.9 2.2 23 348-370 9-31 (301)
492 1yqt_A RNAse L inhibitor; ATP- 86.3 0.29 1E-05 50.8 2.5 24 348-371 48-71 (538)
493 1zu4_A FTSY; GTPase, signal re 86.3 0.29 9.9E-06 47.2 2.3 25 347-371 105-129 (320)
494 3ld9_A DTMP kinase, thymidylat 86.1 0.31 1.1E-05 44.4 2.3 26 348-373 22-47 (223)
495 3b5x_A Lipid A export ATP-bind 86.0 0.31 1.1E-05 51.2 2.5 28 345-372 367-394 (582)
496 2xzl_A ATP-dependent helicase 86.0 0.51 1.8E-05 51.5 4.3 20 349-368 377-396 (802)
497 2orv_A Thymidine kinase; TP4A 86.0 0.97 3.3E-05 41.3 5.5 24 410-435 91-114 (234)
498 1ko7_A HPR kinase/phosphatase; 85.9 0.3 1E-05 46.9 2.2 23 348-370 145-167 (314)
499 1t9h_A YLOQ, probable GTPase E 85.9 0.15 5E-06 49.0 -0.0 24 348-371 174-197 (307)
500 4tmk_A Protein (thymidylate ki 85.9 0.3 1E-05 44.1 2.0 23 349-371 5-27 (213)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-73 Score=605.94 Aligned_cols=438 Identities=34% Similarity=0.548 Sum_probs=379.6
Q ss_pred HHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Q 011953 8 AHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKI 79 (474)
Q Consensus 8 ~~~~~~~~fl~~~--------y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~ 79 (474)
+..++|++||.+| |.++|++++.. .+++|.||++||.+|||+||++|+++|.+++++|++|+++++..
T Consensus 3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~----~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~ 78 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAY----RKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQ 78 (595)
T ss_dssp CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHH----TCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHHHc----CCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 3567799999998 99999999875 46799999999999999999999999999999999999998653
Q ss_pred HhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecC--CCCc
Q 011953 80 VFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRK--CKHM 157 (474)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~--C~~~ 157 (474)
...+ .....+.++||+. ++| ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.|.+ ||+.
T Consensus 79 ~~~~-----~~~~~~~~~v~~~------~~~-~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~ 146 (595)
T 3f9v_A 79 LDPT-----YQRDIEKVHVRIV------GIP-RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQE 146 (595)
T ss_dssp HCGG-----GTTTCCCCCCCEE------CCS-CEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCB
T ss_pred hchh-----hhhccceEEEEEe------CCC-CCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCE
Confidence 2211 1122346888887 333 346789999999999999999999999999999999999999 9987
Q ss_pred cccccccccCccccCCCCCCCCCCCCCCCC-ceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceeee
Q 011953 158 FPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKA 236 (474)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~p 236 (474)
+.+.......+.+..|..||+ |+++ +|.++.+.|.|+|||+|+|||.++.+|.|.+||+++|+|++||||.|+|
T Consensus 147 ~~~~~~~~~~~~~~~p~~C~~-----C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~p 221 (595)
T 3f9v_A 147 FEWPEDEEMPEVLEMPTICPK-----CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARP 221 (595)
T ss_dssp CCSSCSSCCCSSCCCCSSCTT-----TCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCS
T ss_pred EEEEeccccCCcccCCCcCCC-----CCCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEeccccccccc
Confidence 754321123467888999985 8886 6999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeeeCCCCC-CccccceeEEEeecccccccccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhcccCc
Q 011953 237 GDDVIVTGILTAKWSPDLK-DVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQ 315 (474)
Q Consensus 237 Gd~V~v~GIl~~~~~~~~~-~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~ 315 (474)
||+|.|+||++..|....+ +.++.++++++|++|+..++......+++++++.+.++++. + ..++.+.++++|.
T Consensus 222 Gd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~~~~~~----~-~~~~~l~~~l~~~ 296 (595)
T 3f9v_A 222 GDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAKD----P-WIRDRIISSIAPS 296 (595)
T ss_dssp SCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHHTTSST----T-TGGGTHHHHTSST
T ss_pred CCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccccccCCCCHHHHHHHHHHhhC----c-HHHHHHHHhhcch
Confidence 9999999999998875332 34567899999999998777667778999988888766532 2 2457899999999
Q ss_pred ccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeC
Q 011953 316 VFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG 395 (474)
Q Consensus 316 i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~ 395 (474)
|+|++.+|+++++++++|..+...+ .+++++.|+||+||||||||+||+++|+.+++..+..+...+.+++++...++.
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~ 375 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK 375 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGG
T ss_pred hcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecc
Confidence 9999999999999999998777766 889999999999999999999999999999999888777677888988876653
Q ss_pred --CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCCCCCcc
Q 011953 396 --GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLCIT 472 (474)
Q Consensus 396 --~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~~~~~~ 472 (474)
+.+...+|++.+|++|||||||||+++++.+++|+++||++.+++.+.|....++.+++|||||||. |+||+..++.
T Consensus 376 ~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~ 455 (595)
T 3f9v_A 376 GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVS 455 (595)
T ss_dssp GTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSC
T ss_pred ccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCch
Confidence 6788899999999999999999999999999999999999999999999999999999999999998 8998776543
No 2
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=1.2e-49 Score=384.54 Aligned_cols=258 Identities=24% Similarity=0.382 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhh
Q 011953 7 PAHLKALAEFVIRH-HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDELK 85 (474)
Q Consensus 7 ~~~~~~~~~fl~~~-y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~ 85 (474)
.+..++|++||.+| |+++|++|+.+. . .+++|.||++||.+|||+||++|+++|.+++++|++|++++.+ +
T Consensus 12 ~~~~~~f~~Fl~~~~Y~~~i~~~~~~~-~-~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~--~---- 83 (279)
T 1ltl_A 12 SKTLTKFEEFFSLQDYKDRVFEAIEKY-P-NVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDR--L---- 83 (279)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHT-T-SCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCT--T----
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhhC-C-CCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhcc--c----
Confidence 34556799999998 999999998321 1 4689999999999999999999999999999999999877521 1
Q ss_pred hhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEecCCCCccccccccc
Q 011953 86 SCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELE 165 (474)
Q Consensus 86 ~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C~~C~~~~~~~~~~~ 165 (474)
.... .++||+. + .| ...++|+|++.++||||+|+|+|+|+|.|+|+++.++|.|.+||+.+.+..
T Consensus 84 ----~~~~-~~~vr~~--~----~~-~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~--- 148 (279)
T 1ltl_A 84 ----RKNV-DLNIRFS--G----IS-NVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQ--- 148 (279)
T ss_dssp ----CCCC-CCEEEEE--C----CS-CBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEEC---
T ss_pred ----cCCe-eEEEEEE--C----CC-CCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEe---
Confidence 1122 6899987 2 33 246799999999999999999999999999999999999999998754332
Q ss_pred cCccccCCCCCCCCCCCCCCCCceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccceeeeCCeEEEEEE
Q 011953 166 TRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGI 245 (474)
Q Consensus 166 ~~~~~~~p~~Cp~~~~~~C~~~~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~v~GI 245 (474)
..+.+..|..||+ |++++|.++.+.|.|+|||+|||||.|+.+|.|++||+++|+|++||||.|+|||+|.|+||
T Consensus 149 ~~~~~~~P~~Cp~-----C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 149 STNMITEPSLCSE-----CGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp SSSSCCCCSCCTT-----TCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred cCCcccCCCcCCC-----CCCCCcEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEE
Confidence 2457888999985 98878999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCCccccceeEEEeecccccccccCCCCCCHHHHHHHHHHHHh
Q 011953 246 LTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSE 296 (474)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (474)
++..|. +..+.++++++|+||+..++......+|+++.++|+++.+.
T Consensus 224 ~~~~~~----~~~~~~~~~l~a~~I~~~~~~~~~~~~t~ed~~~i~~ls~~ 270 (279)
T 1ltl_A 224 LRTVRD----ERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELAGD 270 (279)
T ss_dssp EEEEEE----TTTTEEEEEEEEEECCBC-----------------------
T ss_pred EEEeeC----CCCceEEEEEEEEEEEEecCccccCCCCHHHHHHHHHHhcC
Confidence 998872 34567999999999998877666788999999988887543
No 3
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-48 Score=376.32 Aligned_cols=249 Identities=23% Similarity=0.362 Sum_probs=212.1
Q ss_pred CChHHHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHH
Q 011953 4 ENVPAHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIW 75 (474)
Q Consensus 4 ~~~~~~~~~~~~fl~~~--------y~~~i~~~~~~~~~~~~~~l~Vd~~~l~~~~p~L~~~l~~~P~~~l~~~~~a~~~ 75 (474)
+++ +..++|++||.+| |+++|++++.. .+++|.||++||.+|||+||++|+++|.+++++|++|+++
T Consensus 6 ~~~-~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~----~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~ 80 (268)
T 2vl6_A 6 KQI-DYRDVFIEFLTTFKGNNNQNKYIERINELVAY----RKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYD 80 (268)
T ss_dssp -CC-CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHT----TCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHhhhcccCchHHHHHHHHHHHc----CCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 444 6678899999997 89999999885 4679999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEEEEEEEecceeEEEEEEEEEe--cC
Q 011953 76 AHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMC--RK 153 (474)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~~p~~~~~~~~~~~~l~~~~igkLv~i~G~V~~~s~v~~~~~~~~f~C--~~ 153 (474)
++...... .....+.++||+. ++| ...++|+|++.++||||+|+|+|+|+|.|+|+++.++|.| .+
T Consensus 81 ~~~~~~~~-----~~~~~~~~~vr~~------~~~-~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~ 148 (268)
T 2vl6_A 81 HILQLDPT-----YQRDIEKVHVRIV------GIP-RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPD 148 (268)
T ss_dssp HHHTTCGG-----GTTTCSCCCEEEE------CCS-CEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTT
T ss_pred HHHHhCch-----hhccCccEEEEEE------CCC-CCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCC
Confidence 87632211 1123457899987 233 2357999999999999999999999999999999999999 99
Q ss_pred CCCccccccccccCccccCCCCCCCCCCCCCCCC-ceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccc
Q 011953 154 CKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVD 232 (474)
Q Consensus 154 C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~ 232 (474)
||+.+.+.......+.+..|..||. |+++ +|.++.+.|.|+|||+|||||.|+.+|.|++||+++|+|++||||
T Consensus 149 C~~~~~~~~~~~~~~~~~~P~~Cp~-----C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd 223 (268)
T 2vl6_A 149 CMQEFEWPEDEEMPEVLEMPTICPK-----CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVD 223 (268)
T ss_dssp CCCEEESSTTSCCCTTCCCCSBCTT-----TCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTT
T ss_pred CCCEEeeeecccCCCcccCCccCCC-----CCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccC
Confidence 9987654311134567889999984 8887 499999999999999999999999999999999999999999999
Q ss_pred eeeeCCeEEEEEEEEeeeCCC-CCCccccceeEEEeecccccc
Q 011953 233 IVKAGDDVIVTGILTAKWSPD-LKDVRCDLDPVLIANHVRRTN 274 (474)
Q Consensus 233 ~~~pGd~V~v~GIl~~~~~~~-~~~~~~~~~~~i~a~~i~~~~ 274 (474)
.|+|||+|+|+||++..|..+ .++.++.++++++|+||+..+
T Consensus 224 ~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 224 SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 999999999999999988753 335567899999999998764
No 4
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=2.2e-48 Score=391.34 Aligned_cols=272 Identities=26% Similarity=0.342 Sum_probs=232.5
Q ss_pred cccccCccccCCCCCCCCCCCCCCCCceEEeecceeEeeeeEEEEeecccccCCCCcceeEEEEEecCccc------eee
Q 011953 162 PELETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVD------IVK 235 (474)
Q Consensus 162 ~~~~~~~~~~~p~~Cp~~~~~~C~~~~~~~~~~~s~~~d~Q~ikiQe~~~~~~~g~~p~~i~v~l~~dlv~------~~~ 235 (474)
+.++.-.....|..||..+.++|-. .| .-.+++.|.|||+|||||.++++|.|++||+++|+|++|||| +|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~r~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~ 156 (506)
T 3f8t_A 79 PALRELVRTVAPDVEPRVRFRGLPH-RF-RRVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLG 156 (506)
T ss_dssp HHHHHHHHHHCTTSCCCEEEECCCG-GG-SSCSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCC
T ss_pred HHHHHHHHhhCCCCCcccccCCccc-cc-chHhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCccccccccc
Confidence 3334445667899999744444432 12 123456789999999999999999999999999999999999 999
Q ss_pred eCCeEEEEEEEEeeeCCCCCCccccceeEEEeecccccccccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhcccCc
Q 011953 236 AGDDVIVTGILTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQ 315 (474)
Q Consensus 236 pGd~V~v~GIl~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~ 315 (474)
|||+|.|+||++.. +++|++|++ ++.+....+++++.+.|+++++. ..++.++++++|
T Consensus 157 pGd~V~v~GI~~~~--------------~l~a~~i~~-~~~~~~~~~t~ed~~~i~~l~~~------~~~~~l~~sIap- 214 (506)
T 3f8t_A 157 PGLRVEILGIVRSA--------------TLDALEVHK-KDPIPEVHPDPAELEEFRELADK------DPLTTFARAIAP- 214 (506)
T ss_dssp TTCEEEEEEEEETT--------------EEEEEEEEE-ECSSCCCCCCHHHHHHHHHHHHS------CHHHHHHHHHCC-
T ss_pred CCCEEEEEEEEEEe--------------EEEEEEEEE-cCccccCCCCHHHHHHHHHHHHH------HHHHHHHHHhcc-
Confidence 99999999999842 899999988 45556788999999999998763 246899999999
Q ss_pred ccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHH-HHhcCceEEEeCCCcccCCceEEEEee
Q 011953 316 VFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFA-AKLSNRSVITTGLGSTSAGLTVTAVKD 394 (474)
Q Consensus 316 i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~i-a~~~~~~~~~~~~~~~~~~l~~~~~~~ 394 (474)
|+|++.+|+|++++|+||..+ .|+++|+||+|+||| ||+||+++ ++++++..|+.+..++..+++++ .++
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEE
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEc
Confidence 999999999999999998543 788999999999999 99999999 99999999998877777788887 655
Q ss_pred C-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCCCCc
Q 011953 395 G-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLCI 471 (474)
Q Consensus 395 ~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~~~~ 471 (474)
. | |.+++|++++|++|+||||||+++++..|.+|+++||+|++++. |. +++++|+||||+||.++||+.+++
T Consensus 286 ~tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~ 358 (506)
T 3f8t_A 286 DRG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPI 358 (506)
T ss_dssp SSS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGG
T ss_pred CCC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCc
Confidence 4 6 99999999999999999999999999999999999999999976 65 999999999999998888876665
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=1.2e-15 Score=151.10 Aligned_cols=139 Identities=17% Similarity=0.269 Sum_probs=109.7
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCC--cc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG--ST 383 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~--~~ 383 (474)
+.+...+.++++|++.+++++..++.+| .|+||+||||||||++|+++++..+.+++..... ..
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~ 84 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLL 84 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 5677888899999999999999888775 5799999999999999999999988776654432 11
Q ss_pred cCCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 384 SAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 384 ~~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
...+........ +.+...+|.+ .++++||||++.++++.++.|+++|+++.+++ .|.....+.++.+++|+||
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 85 PSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp HHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECT
T ss_pred hhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCC
Confidence 122333333222 4555556655 35899999999999999999999999998875 6777788889999999998
Q ss_pred CC
Q 011953 462 KG 463 (474)
Q Consensus 462 ~~ 463 (474)
..
T Consensus 160 ~~ 161 (331)
T 2r44_A 160 VE 161 (331)
T ss_dssp TC
T ss_pred Cc
Confidence 63
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.59 E-value=1.3e-15 Score=151.70 Aligned_cols=143 Identities=27% Similarity=0.385 Sum_probs=104.3
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCC------------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL------------ 380 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~------------ 380 (474)
+.+++|++.+++++..+++.+ ...|+||+||||||||++|+++++.+++..+..+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccc
Confidence 446899999999887777653 12569999999999999999999988753322110
Q ss_pred ---------------------CcccCCceEEEEe----eCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 381 ---------------------GSTSAGLTVTAVK----DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 381 ---------------------~~~~~~l~~~~~~----~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
+.+...+...... ..+.+...+|.+..+++|++||||++.++.+.++.|+++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 0000011110000 002234556777778899999999999999999999999999
Q ss_pred cEEEEEEcCeeEeeCCCeEEEEeecCC-CCCCC
Q 011953 436 QTISVAKAGLVTTLSTRTIIFGATNPK-GHYDP 467 (474)
Q Consensus 436 ~~~~i~~~g~~~~~~~~~~viaatNp~-~~~d~ 467 (474)
+...+...|.....+.++.+|+|+||. +.+++
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~ 203 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEEGDLRP 203 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCSCCCCH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCCCCCCH
Confidence 988888888888888899999999985 56654
No 7
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.55 E-value=4.7e-15 Score=153.70 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=97.3
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc--eEEEeCC-Cc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGL-GS 382 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~--~~~~~~~-~~ 382 (474)
+.+.+++.+.|+|++.++++++.++.+| .|+||+||||||||++|+++++.++. ++..... ..
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~~~--------------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~ 79 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 79 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHT--------------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC--------------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Confidence 5678889999999999999999998875 57999999999999999999998854 2222222 11
Q ss_pred ccCCceE----EEEeeCCeee-eeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEE
Q 011953 383 TSAGLTV----TAVKDGGEWM-LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (474)
Q Consensus 383 ~~~~l~~----~~~~~~~~~~-~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~via 457 (474)
+...+.. ......+.+. ...|. .+.++|+|||||++++++.++.|+++|+++.+++ .|.....+.++ +|+
T Consensus 80 t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ 154 (500)
T 3nbx_X 80 TPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVA 154 (500)
T ss_dssp CHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEE
T ss_pred CHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhh
Confidence 2222211 1111112111 12222 2246799999999999999999999999999875 67777778775 677
Q ss_pred eecCC
Q 011953 458 ATNPK 462 (474)
Q Consensus 458 atNp~ 462 (474)
|||+.
T Consensus 155 ATN~l 159 (500)
T 3nbx_X 155 ASNEL 159 (500)
T ss_dssp EESSC
T ss_pred ccccC
Confidence 77863
No 8
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-14 Score=145.18 Aligned_cols=139 Identities=21% Similarity=0.188 Sum_probs=84.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+|+.|...+..+.... ...+..++.+.++||+||||||||++|+++|..++.+++.+.........
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~---- 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY---- 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc----
Confidence 4578888888887766554322110 00111244557899999999999999999999999988876432221110
Q ss_pred EeeCCeeeee-cccc---ccCCceEEEEcCCCCCChH-----------hHHH---HHHHHHhcEEEEEEcCeeEeeCCCe
Q 011953 392 VKDGGEWMLE-AGAL---VLADGGLCCIDEFDSMREH-----------DRAT---IHEAMEQQTISVAKAGLVTTLSTRT 453 (474)
Q Consensus 392 ~~~~~~~~~~-~g~l---~~a~~gil~iDEid~~~~~-----------~~~~---l~~~me~~~~~i~~~g~~~~~~~~~ 453 (474)
. |+.... ...+ ....++|+||||+|.+.+. .+.. |+..|+. .. -..++
T Consensus 223 v---Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg---------~~--~~~~V 288 (405)
T 4b4t_J 223 I---GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG---------FE--TSKNI 288 (405)
T ss_dssp T---THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT---------TT--CCCCE
T ss_pred c---chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc---------cC--CCCCe
Confidence 0 100000 0011 1235789999999997421 1223 3444442 11 13467
Q ss_pred EEEEeecCCCCCCCCC
Q 011953 454 IIFGATNPKGHYDPNL 469 (474)
Q Consensus 454 ~viaatNp~~~~d~~~ 469 (474)
.||||||.++.+|||.
T Consensus 289 ~vIaATNrpd~LDpAl 304 (405)
T 4b4t_J 289 KIIMATNRLDILDPAL 304 (405)
T ss_dssp EEEEEESCSSSSCHHH
T ss_pred EEEeccCChhhCCHhH
Confidence 8999999998888864
No 9
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.7e-14 Score=142.20 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=85.8
Q ss_pred ccCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
-+.+|.|++.+|+.|...+..+.... ......++.+.++||+||||||||++|+++|..++.+++.+.......
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s----- 254 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ----- 254 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC-----
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh-----
Confidence 34578898888887766554321110 001122344577999999999999999999999999888764322211
Q ss_pred EEeeCCeeeeecccc--------ccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCC
Q 011953 391 AVKDGGEWMLEAGAL--------VLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLST 451 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l--------~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~ 451 (474)
.|..+.... ....++|+||||+|.+... ....+.+.|.. .+|. ....
T Consensus 255 ------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~------lDg~--~~~~ 320 (437)
T 4b4t_I 255 ------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDGF--DDRG 320 (437)
T ss_dssp ------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH------HHHC--CCSS
T ss_pred ------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH------hhCc--CCCC
Confidence 111111111 1235789999999987321 23333333331 0010 1134
Q ss_pred CeEEEEeecCCCCCCCCCC
Q 011953 452 RTIIFGATNPKGHYDPNLC 470 (474)
Q Consensus 452 ~~~viaatNp~~~~d~~~~ 470 (474)
++.||||||.++.+|||.-
T Consensus 321 ~ViVIaATNrpd~LDpALl 339 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALI 339 (437)
T ss_dssp SEEEEEEESCSTTCCTTSS
T ss_pred CEEEEEeCCChhhcCHHHh
Confidence 6799999999999999863
No 10
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.6e-14 Score=142.63 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=83.8
Q ss_pred cCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+|+.|...+..+.... ......++.+.++||+||||||||++|+++|..++.+++.+.......
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s------ 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD------ 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC------
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc------
Confidence 4467788888777665554321110 001112345577999999999999999999999999888764322211
Q ss_pred EeeCCeeeeeccc--------cccCCceEEEEcCCCCCChH-----------hH---HHHHHHHHhcEEEEEEcCeeEee
Q 011953 392 VKDGGEWMLEAGA--------LVLADGGLCCIDEFDSMREH-----------DR---ATIHEAMEQQTISVAKAGLVTTL 449 (474)
Q Consensus 392 ~~~~~~~~~~~g~--------l~~a~~gil~iDEid~~~~~-----------~~---~~l~~~me~~~~~i~~~g~~~~~ 449 (474)
.|..+... .....++|+||||+|.+... .. ..|+..|+. . .-
T Consensus 254 -----k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg---------~--~~ 317 (437)
T 4b4t_L 254 -----KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG---------F--DN 317 (437)
T ss_dssp -----SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS---------S--SC
T ss_pred -----ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc---------c--cC
Confidence 11111110 11236799999999987321 12 234444542 1 11
Q ss_pred CCCeEEEEeecCCCCCCCCC
Q 011953 450 STRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 450 ~~~~~viaatNp~~~~d~~~ 469 (474)
..++.||||||.++.+|||.
T Consensus 318 ~~~vivI~ATNrp~~LDpAl 337 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPAL 337 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTT
T ss_pred CCCeEEEEecCCchhhCHHH
Confidence 24578999999999999985
No 11
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=2.3e-14 Score=124.06 Aligned_cols=90 Identities=12% Similarity=0.183 Sum_probs=70.2
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR 426 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~ 426 (474)
+.+|||+||||||||++|+++++.++ +++...+...... ...|.+..+++|++||||++.++.+.|
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~a~~~~l~lDei~~l~~~~q 92 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-------------MPMELLQKAEGGVLYVGDIAQYSRNIQ 92 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-------------CHHHHHHHTTTSEEEEEECTTCCHHHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-------------hhhhHHHhCCCCeEEEeChHHCCHHHH
Confidence 36799999999999999999998877 5554433221110 134566678899999999999999999
Q ss_pred HHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
..|+++|+++. +.++++|+|||.+
T Consensus 93 ~~Ll~~l~~~~------------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 93 TGITFIIGKAE------------RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHHHHT------------TTTCEEEEEEEEC
T ss_pred HHHHHHHHhCC------------CCCEEEEEecCCC
Confidence 99999999752 4567899999975
No 12
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.8e-14 Score=143.73 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=84.0
Q ss_pred cCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+|+.|...+..+.... ...+..++.+.++||+||||||||++|+++|..++.+++.+.......
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~------ 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ------ 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS------
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh------
Confidence 4578888888888766554322110 001112344578999999999999999999999999888764322211
Q ss_pred EeeCCeeeeeccc-----c---ccCCceEEEEcCCCCCCh-----------HhHHH---HHHHHHhcEEEEEEcCeeEee
Q 011953 392 VKDGGEWMLEAGA-----L---VLADGGLCCIDEFDSMRE-----------HDRAT---IHEAMEQQTISVAKAGLVTTL 449 (474)
Q Consensus 392 ~~~~~~~~~~~g~-----l---~~a~~gil~iDEid~~~~-----------~~~~~---l~~~me~~~~~i~~~g~~~~~ 449 (474)
.|...... + ....++|+||||+|.+.. ..... |+..|+. .. -
T Consensus 254 -----~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg---------~~--~ 317 (434)
T 4b4t_M 254 -----MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG---------FS--S 317 (434)
T ss_dssp -----SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT---------SC--S
T ss_pred -----cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc---------cC--C
Confidence 11111111 1 123578999999997511 11222 3444432 11 1
Q ss_pred CCCeEEEEeecCCCCCCCCC
Q 011953 450 STRTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 450 ~~~~~viaatNp~~~~d~~~ 469 (474)
..++.||||||.++.+|||.
T Consensus 318 ~~~ViVIaaTNrp~~LD~Al 337 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPAL 337 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTT
T ss_pred CCCEEEEEeCCCchhcCHhH
Confidence 34679999999999999985
No 13
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.43 E-value=5.9e-14 Score=141.39 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=89.9
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecC------------------CCCceeccccceecCCCCcchhHHHHHH
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDA------------------SGTKVRGESHLLLVGDPGTGKSQFLKFA 367 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~------------------~~~~~r~~~~iLL~G~pGtGKs~la~~i 367 (474)
..+.+.+...|+|++.+|+++..++.....+... .+...++..++||+||||||||++|+++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 4566777788999999999999887421111000 0000123468999999999999999999
Q ss_pred HHhcCceEEEeCCCccc-CCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChH--------------hHHHHH
Q 011953 368 AKLSNRSVITTGLGSTS-AGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREH--------------DRATIH 430 (474)
Q Consensus 368 a~~~~~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~--------------~~~~l~ 430 (474)
++.++.+++........ .++........ .......+.+..+.+||+||||++++... .++.|+
T Consensus 93 a~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll 172 (376)
T 1um8_A 93 AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALL 172 (376)
T ss_dssp HHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHH
T ss_pred HHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHH
Confidence 99998777765433211 11111100000 00001123344567899999999999887 899999
Q ss_pred HHHHhcEEEEEEcCeeEeeC--------CCeEEEEeecC
Q 011953 431 EAMEQQTISVAKAGLVTTLS--------TRTIIFGATNP 461 (474)
Q Consensus 431 ~~me~~~~~i~~~g~~~~~~--------~~~~viaatNp 461 (474)
.+|+.+.+.+...|.....+ .++.+|+|+|.
T Consensus 173 ~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~ 211 (376)
T 1um8_A 173 KIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF 211 (376)
T ss_dssp HHHHCCEEC---------------CEECTTCEEEEEECC
T ss_pred HHhhccceecccccccccCCcceEEEecCCeEEEecCCH
Confidence 99998876554544433322 34566777763
No 14
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.42 E-value=9.5e-14 Score=120.47 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=67.2
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~ 423 (474)
+.||||+||||||||++|+++++.+. .+++ ..+...... ....|.+..+++|++||||++.+++
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------------~~~~~~~~~a~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------------PQLNDFIALAQGGTLVLSHPEHLTR 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------------SCHHHHHHHHTTSCEEEECGGGSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------------hhhhcHHHHcCCcEEEEcChHHCCH
Confidence 36799999999999999999998863 3444 322221111 1234556678899999999999999
Q ss_pred HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 424 HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 424 ~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+.|..|+++|+. .+.++++|+|||.+
T Consensus 91 ~~q~~Ll~~l~~-------------~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 91 EQQYHLVQLQSQ-------------EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHHHHHHS-------------SSCSSCEEEEESSC
T ss_pred HHHHHHHHHHhh-------------cCCCEEEEEECCcC
Confidence 999999999943 13457899999973
No 15
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.40 E-value=8.7e-14 Score=135.97 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=90.6
Q ss_pred cccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEE
Q 011953 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~ 391 (474)
+++|.......+...+... .+.+.++||+||||||||++|+++++.+++ +++...+......+..+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 4667666555544333221 012467999999999999999999997753 444443333211110000
Q ss_pred Eee------CCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 392 VKD------GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 392 ~~~------~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
..+ .+......|.+..+++|++|||||+.++.+.|..|+.+|+++.+. +.|.....+.++++|+|||+.
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSC
T ss_pred hcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCcc
Confidence 000 011123456777788999999999999999999999999988764 666666677889999999984
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.40 E-value=9.8e-14 Score=132.77 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=85.9
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~ 390 (474)
.+++|++.....+...+... ...+.++||+||||||||++|+++++.++ .+++...+......+...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~ 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHH----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHH
Confidence 34667776666554333210 01136799999999999999999999876 345544433321110000
Q ss_pred EE----ee--CCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 391 AV----KD--GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 391 ~~----~~--~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.. +. .+......|.+..+++|++||||++.++.+.+..|+++|+++.+. +.|.....+.++++|+|||+.
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp HHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESSC
T ss_pred HhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCcC
Confidence 00 00 011112356666788999999999999999999999999998764 455555556778999999984
No 17
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.2e-13 Score=139.92 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=82.4
Q ss_pred cCcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+|+.|...+...... ....+..++.+.++||+||||||||++|+++|..++.+++.+...... ...
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~----sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV----QKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC----CCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh----ccc
Confidence 456888888887776544321110 000111234567899999999999999999999999988876432221 110
Q ss_pred EeeCCeeeeecc-ccccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGEWMLEAG-ALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~~~~~~g-~l~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
..++....-... ......++|+||||+|.+... .+..+.+.|.+ ..|. .-..++.|||||
T Consensus 284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~------lDg~--~~~~~ViVIaAT 355 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQ------LDGF--DPRGNIKVMFAT 355 (467)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHH------HHSS--CCTTTEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHH------hhcc--CCCCcEEEEeCC
Confidence 000000000000 011235789999999987321 12233333321 0111 113467899999
Q ss_pred cCCCCCCCCC
Q 011953 460 NPKGHYDPNL 469 (474)
Q Consensus 460 Np~~~~d~~~ 469 (474)
|.++.+|||.
T Consensus 356 Nrpd~LDpAL 365 (467)
T 4b4t_H 356 NRPNTLDPAL 365 (467)
T ss_dssp SCTTSBCHHH
T ss_pred CCcccCChhh
Confidence 9988888764
No 18
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.1e-13 Score=140.36 Aligned_cols=137 Identities=23% Similarity=0.237 Sum_probs=83.0
Q ss_pred cCcccchHHHHHHHHhhhhCCcee---ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH---VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~---~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
+.+|.|++.+|+.|...+...... +...| ++.+.++||+||||||||++|+++|..++.+++.+.........
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g--~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~-- 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIG--IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY-- 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC--CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS--
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc--
Confidence 347888888888776655432111 11112 34456799999999999999999999999988876433221110
Q ss_pred EEEeeCCeeeee-cccc---ccCCceEEEEcCCCCCCh-----------Hh---HHHHHHHHHhcEEEEEEcCeeEeeCC
Q 011953 390 TAVKDGGEWMLE-AGAL---VLADGGLCCIDEFDSMRE-----------HD---RATIHEAMEQQTISVAKAGLVTTLST 451 (474)
Q Consensus 390 ~~~~~~~~~~~~-~g~l---~~a~~gil~iDEid~~~~-----------~~---~~~l~~~me~~~~~i~~~g~~~~~~~ 451 (474)
. |+.... ...+ ....++|+||||+|.+.. .. ...|+..|+. . .-..
T Consensus 247 --~---Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg---------~--~~~~ 310 (428)
T 4b4t_K 247 --L---GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG---------F--DQST 310 (428)
T ss_dssp --C---SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH---------S--CSSC
T ss_pred --c---chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC---------C--CCCC
Confidence 0 100000 0011 123578999999986411 11 2334445543 1 0123
Q ss_pred CeEEEEeecCCCCCCCCC
Q 011953 452 RTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 452 ~~~viaatNp~~~~d~~~ 469 (474)
++.||||||.++.+|||.
T Consensus 311 ~v~vI~aTN~~~~LD~Al 328 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPAL 328 (428)
T ss_dssp SEEEEEEESCSSSCCHHH
T ss_pred CEEEEEecCChhhcChhh
Confidence 578999999999898864
No 19
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=1.1e-12 Score=140.22 Aligned_cols=140 Identities=22% Similarity=0.313 Sum_probs=99.0
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceE----EEeCCCcc----
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV----ITTGLGST---- 383 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~----~~~~~~~~---- 383 (474)
...+++|++.+++.+..++..| .+++|+||||||||++|++++...+... ...+....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--------------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--------------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP 104 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--------------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC
T ss_pred ccceEECchhhHhhccccccCC--------------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC
Confidence 3457899999999999888775 5799999999999999999999875321 11000000
Q ss_pred --------------------------------------------------------------cCCceEEEEee----C--
Q 011953 384 --------------------------------------------------------------SAGLTVTAVKD----G-- 395 (474)
Q Consensus 384 --------------------------------------------------------------~~~l~~~~~~~----~-- 395 (474)
...+......+ +
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 00011111000 0
Q ss_pred ---CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCe----------eEeeCCCeEEEEeecCC
Q 011953 396 ---GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGL----------VTTLSTRTIIFGATNPK 462 (474)
Q Consensus 396 ---~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~----------~~~~~~~~~viaatNp~ 462 (474)
......+|.+..|++|+|||||++.+++..++.|+++|+++.+.+. |. ....+.++.||+|||+.
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHH
Confidence 0122467888899999999999999999999999999999988753 32 34567789999999985
Q ss_pred --CCCCC
Q 011953 463 --GHYDP 467 (474)
Q Consensus 463 --~~~d~ 467 (474)
..++|
T Consensus 263 ~~~~l~~ 269 (604)
T 3k1j_A 263 TVDKMHP 269 (604)
T ss_dssp HHHHSCH
T ss_pred HHhhcCH
Confidence 44544
No 20
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.31 E-value=6.4e-13 Score=130.90 Aligned_cols=140 Identities=23% Similarity=0.217 Sum_probs=82.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhc-CceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-NRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~-~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+|+|++.+|+.+...+..+.+... ..+ ...+..++||+||||||||++|+++++.+ +..++............
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~-- 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL-- 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhh--
Confidence 45789999999988766643221111 111 12344789999999999999999999988 66665543322111100
Q ss_pred EEeeCCeeeee--ccccccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEE
Q 011953 391 AVKDGGEWMLE--AGALVLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (474)
Q Consensus 391 ~~~~~~~~~~~--~g~l~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~via 457 (474)
.. ...... ........++|+||||+|.+.+ ...+.++..|+.-. ..+.++.|||
T Consensus 88 --g~-~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~ 154 (322)
T 1xwi_A 88 --GE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLG 154 (322)
T ss_dssp --CS-CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEE
T ss_pred --hH-HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEE
Confidence 00 000000 0011124678999999998832 12334444454210 1135689999
Q ss_pred eecCCCCCCCC
Q 011953 458 ATNPKGHYDPN 468 (474)
Q Consensus 458 atNp~~~~d~~ 468 (474)
|||+++.+|++
T Consensus 155 atn~~~~ld~a 165 (322)
T 1xwi_A 155 ATNIPWVLDSA 165 (322)
T ss_dssp EESCTTTSCHH
T ss_pred ecCCcccCCHH
Confidence 99999888764
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.31 E-value=1.4e-12 Score=129.08 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=90.8
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
-+.+++|++.+++.+...+...... + ....++||+||||||||++|+++++..+.+++........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~----~---~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------- 92 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKR----N---ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------- 92 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHT----T---SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhc----C---CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-------
Confidence 3457899999999887766542100 0 1235799999999999999999999988776654332211
Q ss_pred EeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcC------eeEeeCCCeEEEEeecCCCCC
Q 011953 392 VKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG------LVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 392 ~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g------~~~~~~~~~~viaatNp~~~~ 465 (474)
..+. ........++++++||||++.++.+.+..|+.+|+++.+.+..+. ....++ ++.+|+|||+.+.+
T Consensus 93 --~~~~--~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l 167 (338)
T 3pfi_A 93 --KSGD--LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGML 167 (338)
T ss_dssp --SHHH--HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGS
T ss_pred --chhH--HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcccc
Confidence 0000 001111246789999999999999999999999998776532211 111222 58999999986655
Q ss_pred CC
Q 011953 466 DP 467 (474)
Q Consensus 466 d~ 467 (474)
++
T Consensus 168 ~~ 169 (338)
T 3pfi_A 168 SN 169 (338)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 22
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.30 E-value=3.6e-12 Score=139.95 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=100.0
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCC
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAG 386 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~ 386 (474)
.+.+.+...++|++.++..+..++....... ..+-++..++||+||||||||++|+++++.++.+++...+......
T Consensus 451 ~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~---~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 451 NLGDRLKMLVFGQDKAIEALTEAIKMARAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_dssp HHHHHHTTTSCSCHHHHHHHHHHHHHHHTTC---SCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSS
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHhccc---CCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcch
Confidence 3556788899999999877765553210000 0111233479999999999999999999999877776544332211
Q ss_pred ceEEEEeeC-Ceee------eeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 387 LTVTAVKDG-GEWM------LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 387 l~~~~~~~~-~~~~------~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
.+.+...+. ..+. ...+.+..+.++|+||||++++.++.++.|+++|+++.++. ..|..... .++.+|+||
T Consensus 528 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~-~~g~~~~~-~~~~iI~ts 605 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTD-NNGRKADF-RNVVLVMTT 605 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEE-TTTEEEEC-TTEEEEEEE
T ss_pred hhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEc-CCCCEEec-CCeEEEEec
Confidence 111100000 0010 01233445678999999999999999999999999998874 33444444 578999999
Q ss_pred cCC
Q 011953 460 NPK 462 (474)
Q Consensus 460 Np~ 462 (474)
|+.
T Consensus 606 N~~ 608 (758)
T 1r6b_X 606 NAG 608 (758)
T ss_dssp CSS
T ss_pred Ccc
Confidence 984
No 23
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.30 E-value=2.6e-14 Score=143.27 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=81.0
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecC---CCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDA---SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST 383 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~---~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~ 383 (474)
.+.+.+...|+|++.+|+++..++......... .........++||+||||||||++|+++|+.++.+++.+.....
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 344555567899999999988777421111000 00111234789999999999999999999999888876643321
Q ss_pred c-CCceEEEEeeC--CeeeeeccccccCCceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEE
Q 011953 384 S-AGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISV 440 (474)
Q Consensus 384 ~-~~l~~~~~~~~--~~~~~~~g~l~~a~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i 440 (474)
. .++........ .-+....+.+..+.+||+||||+|++.+. .++.|+++|+...+.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~ 161 (363)
T 3hws_A 88 TEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 161 (363)
T ss_dssp TTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----
T ss_pred cccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeec
Confidence 1 11110000000 00001122234457899999999998776 8999999999444433
No 24
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.29 E-value=1.7e-12 Score=126.87 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=93.8
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcc
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGST 383 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~ 383 (474)
.+.+.+...++|++.+++.+..++..+..... .+-++..++||+||||||||++|+++++.+.. +++...+...
T Consensus 10 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 10 RLEEELHKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp THHHHHHTTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 34566677889999999988877765411100 11123357999999999999999999988632 3444433222
Q ss_pred cCCceEEEEeeC-----Ce--eeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 384 SAGLTVTAVKDG-----GE--WMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 384 ~~~l~~~~~~~~-----~~--~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
..........+. +. ...-.+.+..+.++++||||+++++++.++.|+++|+++.+.. ..+..... .++.+|
T Consensus 87 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~-~~~~~~~~-~~~iiI 164 (311)
T 4fcw_A 87 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTD-SHGRTVDF-RNTVII 164 (311)
T ss_dssp CSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEC-TTSCEEEC-TTEEEE
T ss_pred cccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEc-CCCCEEEC-CCcEEE
Confidence 111100000000 00 0011123334567999999999999999999999999988762 12222222 256799
Q ss_pred EeecC
Q 011953 457 GATNP 461 (474)
Q Consensus 457 aatNp 461 (474)
+|||+
T Consensus 165 ~ttn~ 169 (311)
T 4fcw_A 165 MTSNL 169 (311)
T ss_dssp EEEST
T ss_pred Eeccc
Confidence 99998
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.28 E-value=2.9e-13 Score=133.35 Aligned_cols=139 Identities=23% Similarity=0.201 Sum_probs=85.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
+.+|+|++.+|+.+...+..............++..++||+||||||||++|+++++.++.+++.+..........
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~---- 92 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM---- 92 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTG----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhccc----
Confidence 4578999999999887764322111111112234578999999999999999999999888777653221110000
Q ss_pred eeCCeeeee----ccccccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEE
Q 011953 393 KDGGEWMLE----AGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (474)
Q Consensus 393 ~~~~~~~~~----~g~l~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~via 457 (474)
+..... ........++|+||||+|.+... .+..++..|+.-. ....++.|||
T Consensus 93 ---g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ 159 (322)
T 3eie_A 93 ---GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLG 159 (322)
T ss_dssp ---GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEE
T ss_pred ---chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEE
Confidence 000000 00111235689999999988542 2455666665310 1134689999
Q ss_pred eecCCCCCCCC
Q 011953 458 ATNPKGHYDPN 468 (474)
Q Consensus 458 atNp~~~~d~~ 468 (474)
|||+++.+|++
T Consensus 160 atn~~~~ld~a 170 (322)
T 3eie_A 160 ATNIPWQLDSA 170 (322)
T ss_dssp EESCGGGSCHH
T ss_pred ecCChhhCCHH
Confidence 99998878764
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.26 E-value=1.4e-12 Score=126.65 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=66.7
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-------cCCceEEEEcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-------LADGGLCCIDE 417 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-------~a~~gil~iDE 417 (474)
+.+.++||+||||||||++|+++|+.++.+++.......... ........ + ...+. ...++|+||||
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~----~~g~~~~~-i-~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG----NAGEPAKL-I-RQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC-------HHHHH-H-HHHHHHHHHHHTTSSCCCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc----cCchhHHH-H-HHHHHHHHHHHhcCCCeEEEEec
Confidence 445789999999999999999999999887776543221111 11000000 0 01111 23678999999
Q ss_pred CCCCCh-------------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCC
Q 011953 418 FDSMRE-------------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPN 468 (474)
Q Consensus 418 id~~~~-------------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~ 468 (474)
||++.+ ..+..|++.|+.................++.||+|||.+..+|++
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~a 171 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 171 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CH
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHH
Confidence 998754 234778888875432211111111224468999999998888875
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.26 E-value=1e-12 Score=131.22 Aligned_cols=142 Identities=22% Similarity=0.202 Sum_probs=85.2
Q ss_pred cccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 311 ~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
.-+.+|+|++.+|+.+...+..+...........+...++||+||||||||++|+++++.++.+++.+........+.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~-- 125 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM-- 125 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc--
Confidence 345579999999999887764321110000011234578999999999999999999999988777653221111110
Q ss_pred EEeeCCeeeeecccc---ccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 391 AVKDGGEWMLEAGAL---VLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l---~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
..... .....+ ....++||||||+|.+... .++.|+..|+.-. ....++.||
T Consensus 126 --g~~~~--~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI 191 (355)
T 2qp9_X 126 --GESEK--LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVL 191 (355)
T ss_dssp ----CHH--HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEE
T ss_pred --chHHH--HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEE
Confidence 00000 000111 1236789999999998642 2455666665311 113468999
Q ss_pred EeecCCCCCCCC
Q 011953 457 GATNPKGHYDPN 468 (474)
Q Consensus 457 aatNp~~~~d~~ 468 (474)
||||+++.+|++
T Consensus 192 ~atn~~~~ld~a 203 (355)
T 2qp9_X 192 GATNIPWQLDSA 203 (355)
T ss_dssp EEESCGGGSCHH
T ss_pred eecCCcccCCHH
Confidence 999998777754
No 28
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.25 E-value=8.1e-13 Score=128.87 Aligned_cols=150 Identities=20% Similarity=0.288 Sum_probs=94.0
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceeecCC-CC-ceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcc
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDAS-GT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST 383 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~-~~-~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~ 383 (474)
+.+.+.+...|+|++.+++++..++.....+.... +. .-+...++||+||||||||++|+++++.++.+++.......
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 56777888899999999999988775421100000 00 01224689999999999999999999998877665543322
Q ss_pred cC-CceEEEEeeCCe----e-eeeccccccC-CceEEEEcCCCCCChHh------------HHHHHHHHHhcEEEEEEcC
Q 011953 384 SA-GLTVTAVKDGGE----W-MLEAGALVLA-DGGLCCIDEFDSMREHD------------RATIHEAMEQQTISVAKAG 444 (474)
Q Consensus 384 ~~-~l~~~~~~~~~~----~-~~~~g~l~~a-~~gil~iDEid~~~~~~------------~~~l~~~me~~~~~i~~~g 444 (474)
.. +.... +... . ...+|.+..+ .++|+||||++++..+. ++.|+.+|+.+.+.. ..+
T Consensus 87 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~ 162 (310)
T 1ofh_A 87 TEVGYVGK---EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG 162 (310)
T ss_dssp SSCCSGGG---STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE
T ss_pred ccCCccCc---cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec-ccc
Confidence 11 11000 0000 0 0001223333 47899999999997765 889999999876653 222
Q ss_pred eeEeeCCCeEEEEeecC
Q 011953 445 LVTTLSTRTIIFGATNP 461 (474)
Q Consensus 445 ~~~~~~~~~~viaatNp 461 (474)
.....++.+|+|+|+
T Consensus 163 --~~~~~~~~~i~~~~~ 177 (310)
T 1ofh_A 163 --MVKTDHILFIASGAF 177 (310)
T ss_dssp --EEECTTCEEEEEECC
T ss_pred --cccCCcEEEEEcCCc
Confidence 223456789998753
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.25 E-value=1.8e-12 Score=131.04 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=83.2
Q ss_pred cCcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|+|++.+++.+...+........ ..+. .....++||+||||||||++|+++++..+..++........ ...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~----~~~ 188 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT----SKY 188 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhccc-CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh----ccc
Confidence 45799999999988876643211000 0011 12347899999999999999999999999888876543322 111
Q ss_pred EeeCCeee-eeccccccCCceEEEEcCCCCCC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGEWM-LEAGALVLADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~~~-~~~g~l~~a~~gil~iDEid~~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
........ ..........++||||||||.+. ...+..|+..|+... ...+.++.|||||
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~at 259 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---------SAGDDRVLVMGAT 259 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------------CEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc---------ccCCCCEEEEEec
Confidence 11100000 00011112356899999999872 334455666665321 1224568999999
Q ss_pred cCCCCCCC
Q 011953 460 NPKGHYDP 467 (474)
Q Consensus 460 Np~~~~d~ 467 (474)
|++..+|+
T Consensus 260 n~~~~l~~ 267 (389)
T 3vfd_A 260 NRPQELDE 267 (389)
T ss_dssp SCGGGCCH
T ss_pred CCchhcCH
Confidence 99776665
No 30
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.25 E-value=2.2e-12 Score=132.57 Aligned_cols=143 Identities=22% Similarity=0.175 Sum_probs=81.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc-CceEEEeCCCcccCCceEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-NRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~-~~~~~~~~~~~~~~~l~~~ 390 (474)
-+.+|+|++.+|+.+...+..+............+..++||+||||||||++|+++++.+ +.+++.+.... +...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~----l~~~ 207 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD----LVSK 207 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH----HHhh
Confidence 346799999999988876643211100000112334789999999999999999999988 66666554322 1111
Q ss_pred EEeeCCeee-eeccccccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 391 AVKDGGEWM-LEAGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 391 ~~~~~~~~~-~~~g~l~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
......... ..........++|+||||+|.+.+. ..+.++..|+. . ...+.++.||+|
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---------~-~~~~~~v~vI~a 277 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG---------V-GVDNDGILVLGA 277 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC---------S-SCCCSSCEEEEE
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC---------c-ccCCCCEEEEec
Confidence 111110000 0001111246789999999998321 22333333332 1 012356899999
Q ss_pred ecCCCCCCCC
Q 011953 459 TNPKGHYDPN 468 (474)
Q Consensus 459 tNp~~~~d~~ 468 (474)
||+++.+|++
T Consensus 278 tn~~~~ld~a 287 (444)
T 2zan_A 278 TNIPWVLDSA 287 (444)
T ss_dssp ESCGGGSCHH
T ss_pred CCCccccCHH
Confidence 9998777764
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.24 E-value=4.2e-11 Score=117.58 Aligned_cols=137 Identities=22% Similarity=0.276 Sum_probs=91.7
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
+.+++|++.++..+...+...... -....++||+||||||||++|+++++.++.+++.........
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------- 76 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------- 76 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-------
Confidence 457889998888776555321000 012367999999999999999999998877665543322110
Q ss_pred eeCCeeeeeccccc--cCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcC-----eeEeeCCCeEEEEeecCCCCC
Q 011953 393 KDGGEWMLEAGALV--LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG-----LVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 393 ~~~~~~~~~~g~l~--~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g-----~~~~~~~~~~viaatNp~~~~ 465 (474)
.+. -.+.+. .++++++||||++.++...+..|+.+|+++.+.+..+. .......++.+|+|||.++.+
T Consensus 77 --~~~---l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 77 --PGD---LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp --HHH---HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred --hHH---HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 000 011222 36789999999999999999999999998876542111 111123468999999988777
Q ss_pred CCC
Q 011953 466 DPN 468 (474)
Q Consensus 466 d~~ 468 (474)
+++
T Consensus 152 ~~~ 154 (324)
T 1hqc_A 152 TAP 154 (324)
T ss_dssp SCS
T ss_pred CHH
Confidence 764
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.21 E-value=1.1e-11 Score=135.95 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=92.4
Q ss_pred hhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccC
Q 011953 309 LRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSA 385 (474)
Q Consensus 309 ~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~ 385 (474)
.+.+...++|++.+++++..++....... ..+-++..++||+||||||||++|+++|+.+ ..+++...+.....
T Consensus 486 ~~~l~~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 486 ENILHSRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred HHHHhCcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 34556789999999888776664321000 0111222379999999999999999999886 34555554433222
Q ss_pred CceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 386 GLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 386 ~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
..... .+ ...+++..+.++|+|||||++++++.++.|+++|+++.++. .+.......++++|+|||.+
T Consensus 563 ~~~~~----~~---~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 563 KHSTS----GG---QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTD--SKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp SCCCC----------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSS
T ss_pred ccccc----cc---hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEc--CCCCEeccCCeEEEEeCCCC
Confidence 11111 01 11233344567899999999999999999999999988764 22333345678999999964
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.20 E-value=7.1e-12 Score=121.73 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=84.0
Q ss_pred ccCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
-+.+|+|++.+|+.+...+..+.... ...+. .....++||+||||||||++|+++++.++.+++.............
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~- 96 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG- 96 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccc-
Confidence 34579999999998887664421110 00111 1234789999999999999999999999877766543322111100
Q ss_pred EEeeCCee-eeeccccccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 391 AVKDGGEW-MLEAGALVLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 391 ~~~~~~~~-~~~~g~l~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
..... ...........++++||||+|.+.. ..+..++..++..... ....++.||+|
T Consensus 97 ---~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~ 165 (297)
T 3b9p_A 97 ---DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAA 165 (297)
T ss_dssp ---CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEE
T ss_pred ---hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEee
Confidence 00000 0000111234679999999998743 2344566666642111 11235789999
Q ss_pred ecCCCCCCCC
Q 011953 459 TNPKGHYDPN 468 (474)
Q Consensus 459 tNp~~~~d~~ 468 (474)
||.++.+|++
T Consensus 166 tn~~~~l~~~ 175 (297)
T 3b9p_A 166 TNRPQELDEA 175 (297)
T ss_dssp ESCGGGBCHH
T ss_pred cCChhhCCHH
Confidence 9988767653
No 34
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.19 E-value=7.5e-12 Score=135.75 Aligned_cols=139 Identities=22% Similarity=0.208 Sum_probs=86.5
Q ss_pred CcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
.+|.|++.+|+.+...+..+.+... .....++.+.++||+||||||||++|+++|..++.+++.+........ ++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~----~v 552 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM----WF 552 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT----TC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc----cc
Confidence 3678999999999887766533211 122334556789999999999999999999999998887532211110 00
Q ss_pred eeCCeeeeecccc---ccCCceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEE
Q 011953 393 KDGGEWMLEAGAL---VLADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (474)
Q Consensus 393 ~~~~~~~~~~g~l---~~a~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~v 455 (474)
.+ .+... ...+ ....++|+||||||.+... ..+.|+..|+. . .-..++.|
T Consensus 553 Ge-se~~v-r~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg---------~--~~~~~V~v 619 (806)
T 3cf2_A 553 GE-SEANV-REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG---------M--STKKNVFI 619 (806)
T ss_dssp SS-CHHHH-HHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS---------S--CSSSSEEE
T ss_pred ch-HHHHH-HHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC---------C--CCCCCEEE
Confidence 00 00000 0011 1235799999999987432 12345555552 1 11346899
Q ss_pred EEeecCCCCCCCCC
Q 011953 456 FGATNPKGHYDPNL 469 (474)
Q Consensus 456 iaatNp~~~~d~~~ 469 (474)
|||||.++.+|||.
T Consensus 620 i~aTN~p~~lD~Al 633 (806)
T 3cf2_A 620 IGATNRPDIIDPAI 633 (806)
T ss_dssp ECC-CCSSSSCHHH
T ss_pred EEeCCCchhCCHhH
Confidence 99999998888863
No 35
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.18 E-value=1.1e-11 Score=124.29 Aligned_cols=113 Identities=23% Similarity=0.380 Sum_probs=86.8
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCce--EEEeCCCcccCCceEEEE----eeC--CeeeeeccccccCCceEEEEcCC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLGSTSAGLTVTAV----KDG--GEWMLEAGALVLADGGLCCIDEF 418 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~--~~~~~~~~~~~~l~~~~~----~~~--~~~~~~~g~l~~a~~gil~iDEi 418 (474)
+.++|+.|++||||+.+|++++..+++. ++...+......+..+.+ ++. |......|.+..|++|++|||||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecCh
Confidence 3679999999999999999999988764 666665554333221111 111 22234578888999999999999
Q ss_pred CCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 419 d~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+.|+.+.|..|+.+|+++.+. +.|.....+.++++|+|||.
T Consensus 232 ~~l~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 232 GELDQRVQAKLLRVLETGSFT--RLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp GGSCHHHHHHHHHHHHHSEEC--CBTCCCBEECCCEEEEEESS
T ss_pred hhCCHHHHHHHHHHHHhCCcc--cCCCCcceeeeeEEEEecCC
Confidence 999999999999999999876 56666667788999999996
No 36
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.17 E-value=8.6e-12 Score=125.92 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=85.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC---ceEEEeCCCcccCCceEEEEee----C--CeeeeeccccccCCceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKD----G--GEWMLEAGALVLADGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~---~~~~~~~~~~~~~~l~~~~~~~----~--~~~~~~~g~l~~a~~gil~iDE 417 (474)
+.++|+.|++||||+++|++++..++ .+++...+......+..+.+.+ . |.....+|.+..|++|++||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 36799999999999999999999876 3566665544322111110000 0 2222357888899999999999
Q ss_pred CCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
|+.++.+.|..|+++|+++.+. +.|.....+.++++|+|||.
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESS
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCCC
Confidence 9999999999999999999875 56666677788999999997
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.17 E-value=8.8e-12 Score=118.56 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=74.7
Q ss_pred cCcccchHHHHHHHHhhhhCC--ceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGG--VQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g--~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+|+|++.+|+.+...+... ...+. ......+.++||+||||||||++|+++++..+.+++..........+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~-- 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFL--QLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG-- 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHH--HcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc--
Confidence 457899999998875443211 01111 111234577999999999999999999998887776654332211000
Q ss_pred EEeeCCeee-eeccccc---cCCceEEEEcCCCCCCh------------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeE
Q 011953 391 AVKDGGEWM-LEAGALV---LADGGLCCIDEFDSMRE------------HDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (474)
Q Consensus 391 ~~~~~~~~~-~~~g~l~---~a~~gil~iDEid~~~~------------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~ 454 (474)
+... ...+.+. ...++++||||+|.+.. ..+..+.+.++.- .+. ..+.++.
T Consensus 81 -----~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~--~~~~~~~ 147 (262)
T 2qz4_A 81 -----GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM------DGM--GTTDHVI 147 (262)
T ss_dssp -----THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHH------HTC--CTTCCEE
T ss_pred -----ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh------hCc--CCCCCEE
Confidence 0000 0001111 12468999999999832 2333444444320 000 1134689
Q ss_pred EEEeecCCCCCCCC
Q 011953 455 IFGATNPKGHYDPN 468 (474)
Q Consensus 455 viaatNp~~~~d~~ 468 (474)
+|+|||.+..+|++
T Consensus 148 vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 148 VLASTNRADILDGA 161 (262)
T ss_dssp EEEEESCGGGGGSG
T ss_pred EEecCCChhhcCHH
Confidence 99999987666654
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.16 E-value=1.4e-11 Score=120.18 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=84.5
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCc--eeecCCCC-ceeccccceecCCCCcchhHHHHHHHHhcCc-------eE
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGV--QHVDASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SV 375 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~--~~~~~~~~-~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-------~~ 375 (474)
..+...+..+|+|++.+|+.+...+.... ......|. ..++..|+||+||||||||++|+++++.... ++
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~ 102 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE
Confidence 45667777789999999998874432110 00000000 0123468999999999999999999977532 33
Q ss_pred EEeCCCcccCCceEEEEeeCCee-eeeccccccCCceEEEEcCCCCC---------ChHhHHHHHHHHHhcEEEEEEcCe
Q 011953 376 ITTGLGSTSAGLTVTAVKDGGEW-MLEAGALVLADGGLCCIDEFDSM---------REHDRATIHEAMEQQTISVAKAGL 445 (474)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~g~l~~a~~gil~iDEid~~---------~~~~~~~l~~~me~~~~~i~~~g~ 445 (474)
+..........+. +.. ....+.+..+.++|+||||+|.+ ..+.+..|+..|+++
T Consensus 103 ~~~~~~~l~~~~~-------g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--------- 166 (309)
T 3syl_A 103 VSVTRDDLVGQYI-------GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--------- 166 (309)
T ss_dssp EEECGGGTCCSST-------TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC---------
T ss_pred EEEcHHHhhhhcc-------cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC---------
Confidence 3332211111000 000 00123344567899999999977 777889999999863
Q ss_pred eEeeCCCeEEEEeecC
Q 011953 446 VTTLSTRTIIFGATNP 461 (474)
Q Consensus 446 ~~~~~~~~~viaatNp 461 (474)
+.++.+|+|+|+
T Consensus 167 ----~~~~~~i~~~~~ 178 (309)
T 3syl_A 167 ----RDDLVVILAGYA 178 (309)
T ss_dssp ----TTTCEEEEEECH
T ss_pred ----CCCEEEEEeCCh
Confidence 245788899875
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.16 E-value=3.6e-12 Score=127.33 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=83.1
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
-+.+|+|++.+|+.+...+..............+...++||+||||||||++|+++++.++.+++.............
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g-- 159 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVG-- 159 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTT--
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccc--
Confidence 345789999999988876643211100000011334789999999999999999999999887776543222111000
Q ss_pred EeeCCee-eeeccccccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGEW-MLEAGALVLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~~-~~~~g~l~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
..... ...........++|+||||+|.+.. ..++.++..|+... ...+.++.||+||
T Consensus 160 --~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~vI~at 228 (357)
T 3d8b_A 160 --EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILVVGAT 228 (357)
T ss_dssp --HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEE
T ss_pred --hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEEEEec
Confidence 00000 0000111124578999999988733 22345555555311 1224578999999
Q ss_pred cCCCCCCC
Q 011953 460 NPKGHYDP 467 (474)
Q Consensus 460 Np~~~~d~ 467 (474)
|++..+|+
T Consensus 229 n~~~~l~~ 236 (357)
T 3d8b_A 229 NRPQEIDE 236 (357)
T ss_dssp SCGGGBCH
T ss_pred CChhhCCH
Confidence 99766665
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.12 E-value=1e-11 Score=130.71 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=87.3
Q ss_pred hhhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccC-
Q 011953 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA- 385 (474)
Q Consensus 307 ~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~- 385 (474)
...+.+..+++|++.+|+.+...+.... .. ... ...++||+||||||||++|++++..++.++..........
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~--~~---~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~ 147 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQK--LT---KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDE 147 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHH--HS---SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH--hc---ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchh
Confidence 3445667789999999988854432210 00 011 2367999999999999999999999988777665433211
Q ss_pred -CceEEEEeeCCeeeeeccc----ccc--CCceEEEEcCCCCCChHh----HHHHHHHHHhcEEE-EEEcCeeEeeC-CC
Q 011953 386 -GLTVTAVKDGGEWMLEAGA----LVL--ADGGLCCIDEFDSMREHD----RATIHEAMEQQTIS-VAKAGLVTTLS-TR 452 (474)
Q Consensus 386 -~l~~~~~~~~~~~~~~~g~----l~~--a~~gil~iDEid~~~~~~----~~~l~~~me~~~~~-i~~~g~~~~~~-~~ 452 (474)
.+........+ ..++. +.. ..++|+||||++++..+. ++.|++.|+.+... +...+.....+ .+
T Consensus 148 ~~~~g~~~~~ig---~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 148 SEIRGHRRTYVG---AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp -------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred hhhhhHHHHHhc---cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 11110000001 11111 122 267799999999998874 47788888643211 11122222222 46
Q ss_pred eEEEEeecCCCCCCCC
Q 011953 453 TIIFGATNPKGHYDPN 468 (474)
Q Consensus 453 ~~viaatNp~~~~d~~ 468 (474)
+++|+|||++..++|+
T Consensus 225 v~iI~ttN~~~~l~~a 240 (543)
T 3m6a_A 225 VLFIATANNLATIPGP 240 (543)
T ss_dssp CEEEEECSSTTTSCHH
T ss_pred eEEEeccCccccCCHH
Confidence 8999999998888753
No 41
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.12 E-value=1.8e-11 Score=132.87 Aligned_cols=139 Identities=20% Similarity=0.201 Sum_probs=83.8
Q ss_pred cCcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+|+.|...+.-+... ....+..++.+.+|||+||||||||+||+++|+.++.+++.+......+..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~---- 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL---- 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc----
Confidence 457889888776665443221110 111233445668899999999999999999999999888765322211100
Q ss_pred EeeCCeeeee-cccc---ccCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 392 VKDGGEWMLE-AGAL---VLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 392 ~~~~~~~~~~-~g~l---~~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
. ++.... ...+ ....++|+||||||.+.+. ..+.|+..|+.- .-..++.||
T Consensus 279 ~---gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-----------~~~~~V~VI 344 (806)
T 3cf2_A 279 A---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVIVM 344 (806)
T ss_dssp T---THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-----------CGGGCEEEE
T ss_pred c---hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-----------cccCCEEEE
Confidence 0 100000 0011 1235789999999997432 223445555431 012357899
Q ss_pred EeecCCCCCCCCC
Q 011953 457 GATNPKGHYDPNL 469 (474)
Q Consensus 457 aatNp~~~~d~~~ 469 (474)
||||.++.+||+.
T Consensus 345 aaTN~~d~LD~AL 357 (806)
T 3cf2_A 345 AATNRPNSIDPAL 357 (806)
T ss_dssp EECSSTTTSCTTT
T ss_pred EecCChhhcCHHH
Confidence 9999998888875
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.10 E-value=1.5e-11 Score=119.97 Aligned_cols=139 Identities=22% Similarity=0.182 Sum_probs=83.0
Q ss_pred cCcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|+|++.+|+.+...+........ ..+..++...++||+||||||||++|++++..++.+++..........+
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~---- 89 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW---- 89 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH----
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh----
Confidence 34688999988887765543110000 0000123346799999999999999999999998777665322110000
Q ss_pred EeeCCeeeeeccccc---cCCceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeE
Q 011953 392 VKDGGEWMLEAGALV---LADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (474)
Q Consensus 392 ~~~~~~~~~~~g~l~---~a~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~ 454 (474)
...... ...+.+. ...++++||||+|.+... .+..|+..|+.- ....++.
T Consensus 90 ~g~~~~--~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~-----------~~~~~v~ 156 (301)
T 3cf0_A 90 FGESEA--NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNVF 156 (301)
T ss_dssp HTTCTT--HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS-----------CTTSSEE
T ss_pred cCchHH--HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc-----------cCCCCEE
Confidence 000000 0011111 134689999999986443 246677777631 0134689
Q ss_pred EEEeecCCCCCCCC
Q 011953 455 IFGATNPKGHYDPN 468 (474)
Q Consensus 455 viaatNp~~~~d~~ 468 (474)
||||||.++.+|++
T Consensus 157 vi~atn~~~~ld~a 170 (301)
T 3cf0_A 157 IIGATNRPDIIDPA 170 (301)
T ss_dssp EEEEESCGGGSCGG
T ss_pred EEEecCCccccChH
Confidence 99999998777765
No 43
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.09 E-value=8.1e-12 Score=120.54 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=82.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+++|++.+++.+...+....... ...........++||+||||||||++|+++++..+.+++.............
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~-- 93 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIG-- 93 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTT--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccc--
Confidence 4568899999888876553311000 0000012334679999999999999999999998887766533221111000
Q ss_pred EeeCCe-eeeeccccccCCceEEEEcCCCCC-----------ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEee
Q 011953 392 VKDGGE-WMLEAGALVLADGGLCCIDEFDSM-----------REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (474)
Q Consensus 392 ~~~~~~-~~~~~g~l~~a~~gil~iDEid~~-----------~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaat 459 (474)
.... ............++|+||||+|.+ ....+..+...++.. .+. ..+.++.+|+||
T Consensus 94 --~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~--~~~~~~~vI~tt 163 (285)
T 3h4m_A 94 --EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM------DGF--DARGDVKIIGAT 163 (285)
T ss_dssp --HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH------HTT--CSSSSEEEEEEC
T ss_pred --hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh------hCC--CCCCCEEEEEeC
Confidence 0000 000001112235689999999987 444566666666531 000 113468999999
Q ss_pred cCCCCCCC
Q 011953 460 NPKGHYDP 467 (474)
Q Consensus 460 Np~~~~d~ 467 (474)
|++..+|+
T Consensus 164 n~~~~l~~ 171 (285)
T 3h4m_A 164 NRPDILDP 171 (285)
T ss_dssp SCGGGBCH
T ss_pred CCchhcCH
Confidence 98766664
No 44
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.08 E-value=4.6e-11 Score=113.55 Aligned_cols=139 Identities=22% Similarity=0.167 Sum_probs=78.5
Q ss_pred ccCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 312 ICPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
-+.+|+|++.+|+.+...+. ....... ....+.+.++||+||||||||++|+++++..+.+++..........+..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQ--KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 87 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHH--HcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence 45578999999887754331 1111111 1112234679999999999999999999998876665543222111100
Q ss_pred EEEeeCCeeeeeccccc---cCCceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEEEEcCeeEeeCCC
Q 011953 390 TAVKDGGEWMLEAGALV---LADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTR 452 (474)
Q Consensus 390 ~~~~~~~~~~~~~g~l~---~a~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i~~~g~~~~~~~~ 452 (474)
. +.... ...+. ...++++||||+|.+... ....++..|+.- .-+.+
T Consensus 88 ----~-~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~ 150 (257)
T 1lv7_A 88 ----V-GASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEG 150 (257)
T ss_dssp ----C-CHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSC
T ss_pred ----h-hHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCC
Confidence 0 00000 01111 124579999999776431 223344444421 11346
Q ss_pred eEEEEeecCCCCCCCCC
Q 011953 453 TIIFGATNPKGHYDPNL 469 (474)
Q Consensus 453 ~~viaatNp~~~~d~~~ 469 (474)
+.||+|||++..+|++.
T Consensus 151 ~~vI~~tn~~~~l~~~l 167 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPAL 167 (257)
T ss_dssp EEEEEEESCTTTSCGGG
T ss_pred EEEEEeeCCchhCCHHH
Confidence 79999999988777653
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.06 E-value=2e-11 Score=126.46 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=84.6
Q ss_pred CcccchHHHHHHHHhhhhCCceee-cCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~ 392 (474)
.+|.|++..++.+...+....... .........+.++||+||||||||++|+++++.++.+++...+......+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~---- 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA---- 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc----
Confidence 468999998888765553210000 000001233567999999999999999999999988877654322211111
Q ss_pred eeCCee-eeecccccc---CCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEE
Q 011953 393 KDGGEW-MLEAGALVL---ADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (474)
Q Consensus 393 ~~~~~~-~~~~g~l~~---a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~via 457 (474)
+.. ....+.+.. ..++++||||||.+.+ ..+..|+..|+... .+.+++|||
T Consensus 280 ---g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIa 345 (489)
T 3hu3_A 280 ---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMA 345 (489)
T ss_dssp ---THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEE
T ss_pred ---chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEE
Confidence 000 000122222 2457999999976643 45677888887421 234689999
Q ss_pred eecCCCCCCCC
Q 011953 458 ATNPKGHYDPN 468 (474)
Q Consensus 458 atNp~~~~d~~ 468 (474)
|||++..+|++
T Consensus 346 aTn~~~~Ld~a 356 (489)
T 3hu3_A 346 ATNRPNSIDPA 356 (489)
T ss_dssp EESCGGGBCGG
T ss_pred ecCCccccCHH
Confidence 99998666654
No 46
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.05 E-value=2.7e-11 Score=115.78 Aligned_cols=139 Identities=21% Similarity=0.166 Sum_probs=77.0
Q ss_pred cCcccchHHHHHHHHhhhhC--CceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLIG--GVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~--g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+++|++.+++.+...+.. ...... ....+.+.++||+||||||||++|+++++..+.+++..........+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~- 86 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYA--NLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG- 86 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHH--HHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHH--HCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc-
Confidence 45688888888777654321 000000 0011223569999999999999999999988776655433222111110
Q ss_pred EEeeCCeeeeecccccc---CCceEEEEcCCCCCChHh---------------HHHHHHHHHhcEEEEEEcCeeEeeCCC
Q 011953 391 AVKDGGEWMLEAGALVL---ADGGLCCIDEFDSMREHD---------------RATIHEAMEQQTISVAKAGLVTTLSTR 452 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l~~---a~~gil~iDEid~~~~~~---------------~~~l~~~me~~~~~i~~~g~~~~~~~~ 452 (474)
. +.. ...+.+.. ..++|+||||+|.+.... +..|+..|+.. .....+
T Consensus 87 ---~-~~~-~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~ 151 (268)
T 2r62_A 87 ---L-GAS-RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAP 151 (268)
T ss_dssp ---S-CSS-SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS----------SCSCSC
T ss_pred ---h-HHH-HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCC
Confidence 0 000 00111111 245899999999986532 12233333210 012335
Q ss_pred eEEEEeecCCCCCCCCC
Q 011953 453 TIIFGATNPKGHYDPNL 469 (474)
Q Consensus 453 ~~viaatNp~~~~d~~~ 469 (474)
+.+|+|||++..+|++.
T Consensus 152 v~vi~ttn~~~~ld~~l 168 (268)
T 2r62_A 152 VIVLAATNRPEILDPAL 168 (268)
T ss_dssp CEEEECBSCCTTSCGGG
T ss_pred EEEEEecCCchhcCHhH
Confidence 78999999987777643
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.04 E-value=1.3e-10 Score=129.10 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=88.8
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCC---
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAG--- 386 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~--- 386 (474)
...|+|++.++..+..++....... ..+-++..++||+||||||||++|+++++.+ +.+++...+......
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 3468999998887766654321000 0011223579999999999999999999887 456665554432221
Q ss_pred --ceEEEEeeCCee--eeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecC
Q 011953 387 --LTVTAVKDGGEW--MLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 387 --l~~~~~~~~~~~--~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp 461 (474)
+......-.|.. ..-.+++....++|+||||+++++++.++.|+++|+++.++- ..|..... .++.||+|||.
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~-~~g~~vd~-~~~iiI~tsn~ 710 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTD-SHGRTVDF-RNTVIILTSNL 710 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECC-SSSCCEEC-TTEEEEEECCT
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceEC-CCCCEecc-CCeEEEEecCc
Confidence 111000000000 001122334567899999999999999999999999998762 22332322 35789999997
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.03 E-value=4.5e-11 Score=122.67 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred ccCcccchHHHH---HHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCce
Q 011953 312 ICPQVFGLFTVK---LAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (474)
Q Consensus 312 ~~p~i~G~~~~K---~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~ 388 (474)
-..+++|++.+. +.+...+..+. ..++||+||||||||++|+++++.++..++..........
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~-- 89 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVK-- 89 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHH--
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHH--
Confidence 345789999988 66666665541 1469999999999999999999999887765532221100
Q ss_pred EEEEeeCCeeeeec-cccccCCceEEEEcCCCCCChHhHHHHHHHHHhcE
Q 011953 389 VTAVKDGGEWMLEA-GALVLADGGLCCIDEFDSMREHDRATIHEAMEQQT 437 (474)
Q Consensus 389 ~~~~~~~~~~~~~~-g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~ 437 (474)
..++ ....+ .....+.++|+||||++.++...+..|+..|+++.
T Consensus 90 --~ir~---~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~ 134 (447)
T 3pvs_A 90 --EIRE---AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT 134 (447)
T ss_dssp --HHHH---HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS
T ss_pred --HHHH---HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc
Confidence 0000 00000 01123567899999999999999999999999754
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.00 E-value=2.3e-10 Score=112.43 Aligned_cols=127 Identities=19% Similarity=0.106 Sum_probs=84.6
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
-+.+++|++.++..+...+-.| +.+..+|+.||||||||++++++++..+..++........ ...
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----~~~ 88 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----IDF 88 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----HHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----HHH
Confidence 3457889999998888777654 1123478888899999999999999988766654322211 000
Q ss_pred EeeCCeeeeecc-ccccCCceEEEEcCCCCCC-hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCCCC
Q 011953 392 VKDGGEWMLEAG-ALVLADGGLCCIDEFDSMR-EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPN 468 (474)
Q Consensus 392 ~~~~~~~~~~~g-~l~~a~~gil~iDEid~~~-~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d~~ 468 (474)
.+ ........ .-....+++++|||++.+. .+.++.|+..|+.. +.++.+|+|+|++..++++
T Consensus 89 i~--~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 89 VR--GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp HH--THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGGGSCTT
T ss_pred HH--HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCccccCHH
Confidence 00 00000000 0012267899999999999 88999999999862 2356899999987666553
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.99 E-value=6.6e-11 Score=121.80 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=80.4
Q ss_pred cCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+|.|++.+|+.+...+. .....+..-| .+.+.++||+||||||||+||++++...+.+++..........+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g--~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~-- 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIG--ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV-- 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT--CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT--
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh--
Confidence 4578899988877654332 1111111112 223466999999999999999999999888776553222111100
Q ss_pred EEeeCCeeeeecccccc---CCceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCe
Q 011953 391 AVKDGGEWMLEAGALVL---ADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l~~---a~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~ 453 (474)
+.+.. .....+.. ..++|+||||+|.+... .++.|+..|+.- ..+.++
T Consensus 91 ---g~~~~-~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~~~~v 155 (476)
T 2ce7_A 91 ---GVGAA-RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DSKEGI 155 (476)
T ss_dssp ---THHHH-HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-----------CGGGTE
T ss_pred ---cccHH-HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CCCCCE
Confidence 00000 00011222 25689999999998542 234455555520 012367
Q ss_pred EEEEeecCCCCCCCC
Q 011953 454 IIFGATNPKGHYDPN 468 (474)
Q Consensus 454 ~viaatNp~~~~d~~ 468 (474)
.||+|||++..+||+
T Consensus 156 iVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 156 IVMAATNRPDILDPA 170 (476)
T ss_dssp EEEEEESCGGGSCGG
T ss_pred EEEEecCChhhhchh
Confidence 999999998777765
No 51
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.92 E-value=1.4e-09 Score=110.56 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=54.1
Q ss_pred hhhhhcccCcccchHHHHHHHHhhhhCCceee-cCCCCc-eeccccceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHV-DASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 306 ~~l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~-~~~~~~-~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
..+.+.+...|+|++.+|+++..++..+.++. ...+.. -....|+||+||||||||++|+++|+.++.+++...
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 45677788899999999999998886532211 111111 012468999999999999999999999887776543
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.86 E-value=2.2e-09 Score=111.11 Aligned_cols=138 Identities=22% Similarity=0.227 Sum_probs=76.6
Q ss_pred ccCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 312 ICPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
-+.+|+|++.+|..+..... ........-+ .+-+.++||+||||||||+||++++..++.+++............
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg--~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~- 105 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV- 105 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS--CCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh-
Confidence 34567787777766653322 1111111112 223356999999999999999999999887666543221110000
Q ss_pred EEEeeCCeeeeec-cccccC---CceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEEEEcCeeEeeCC
Q 011953 390 TAVKDGGEWMLEA-GALVLA---DGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLST 451 (474)
Q Consensus 390 ~~~~~~~~~~~~~-g~l~~a---~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i~~~g~~~~~~~ 451 (474)
+...... ..+..+ .++++||||+|.+... ..+.++..|+.+. .+.
T Consensus 106 ------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~ 168 (499)
T 2dhr_A 106 ------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDT 168 (499)
T ss_dssp ------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSC
T ss_pred ------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCc
Confidence 1000001 111122 3589999999987421 1233344443211 133
Q ss_pred CeEEEEeecCCCCCCCCC
Q 011953 452 RTIIFGATNPKGHYDPNL 469 (474)
Q Consensus 452 ~~~viaatNp~~~~d~~~ 469 (474)
.+.++||||++..+|++.
T Consensus 169 ~viviAatn~p~~LD~aL 186 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPAL 186 (499)
T ss_dssp CCEEEECCSCGGGSCTTT
T ss_pred cEEEEEecCChhhcCccc
Confidence 578999999987777754
No 53
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.85 E-value=1.5e-09 Score=99.53 Aligned_cols=126 Identities=21% Similarity=0.193 Sum_probs=78.7
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC-----ceEEEeCCCcccCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAG 386 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~-----~~~~~~~~~~~~~~ 386 (474)
.+.+++|++..+..+...+..+ ...+++|+||||||||++++.+++... ..++........ +
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 81 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER-G 81 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT-C
T ss_pred CHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc-C
Confidence 3456889999998888777553 113599999999999999999997642 122222111100 0
Q ss_pred ceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 387 LTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 387 l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
... .... ..+ ..........+++++|||++.+..+.+..|...++.. +.++.+|+++|.+..+
T Consensus 82 ~~~--~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 82 IDV--VRHKIKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRI 145 (226)
T ss_dssp HHH--HHHHHHHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGS
T ss_pred hHH--HHHHHHHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhc
Confidence 000 0000 000 0000111246789999999999999999999999862 2356788888876544
Q ss_pred C
Q 011953 466 D 466 (474)
Q Consensus 466 d 466 (474)
+
T Consensus 146 ~ 146 (226)
T 2chg_A 146 I 146 (226)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.82 E-value=1.2e-10 Score=120.22 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=60.0
Q ss_pred hcccCcccchHHHHHHHHhhh---hCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC--ceEEEeCCCccc
Q 011953 310 RGICPQVFGLFTVKLAVALTL---IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN--RSVITTGLGSTS 384 (474)
Q Consensus 310 ~~~~p~i~G~~~~K~ai~~~l---~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~--~~~~~~~~~~~~ 384 (474)
+..+.+++|++.+|+++...+ ..| ..++.++||+||||||||++|+++++.++ .+++........
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~~~----------~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIKSK----------KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHTT----------CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhchhhccCHHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 456678999999998755332 222 11236799999999999999999999887 455543322111
Q ss_pred CCceEEEEeeCCeeeeecccc------ccCCceEEEEcCCCCCChH
Q 011953 385 AGLTVTAVKDGGEWMLEAGAL------VLADGGLCCIDEFDSMREH 424 (474)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~g~l------~~a~~gil~iDEid~~~~~ 424 (474)
.... +........+ ....++|+||||+|.+.+.
T Consensus 103 ~~~~-------~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 103 STEI-------KKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp CSSS-------CHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred HHhh-------hhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccc
Confidence 1000 0000000011 2235789999999998543
No 55
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.78 E-value=4.6e-10 Score=123.39 Aligned_cols=139 Identities=23% Similarity=0.206 Sum_probs=81.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeec-CCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
..++.|++.+|+.+...+..+..... .....++...++||+||||||||+||++++..++..++.......... .
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~----~ 551 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM----W 551 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC----C
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh----h
Confidence 44688999999999877755432211 112234456789999999999999999999998776654432221110 0
Q ss_pred EeeCCeeeeecccc-c---cCCceEEEEcCCCCCChH--------------hHHHHHHHHHhcEEEEEEcCeeEeeCCCe
Q 011953 392 VKDGGEWMLEAGAL-V---LADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (474)
Q Consensus 392 ~~~~~~~~~~~g~l-~---~a~~gil~iDEid~~~~~--------------~~~~l~~~me~~~~~i~~~g~~~~~~~~~ 453 (474)
. +........+ . ...++|+||||+|.+... ..+.|+..|+.. .-..++
T Consensus 552 ~---g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~~~v 617 (806)
T 1ypw_A 552 F---GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STKKNV 617 (806)
T ss_dssp T---TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CC
T ss_pred c---CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc-----------cccCCe
Confidence 0 0000000111 1 124579999999986321 122333333321 112357
Q ss_pred EEEEeecCCCCCCCCC
Q 011953 454 IIFGATNPKGHYDPNL 469 (474)
Q Consensus 454 ~viaatNp~~~~d~~~ 469 (474)
.||+|||+++.+|++.
T Consensus 618 ~vI~tTN~~~~ld~al 633 (806)
T 1ypw_A 618 FIIGATNRPDIIDPAI 633 (806)
T ss_dssp BCCCCCBSCGGGSCTT
T ss_pred EEEEecCCcccCCHHH
Confidence 8999999988888865
No 56
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.75 E-value=5.8e-10 Score=106.82 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=61.3
Q ss_pred cccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCC-----
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM----- 421 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~----- 421 (474)
..++||+||||||||++|+++++..+.+++.........+...... . ..............+++++|||+|.+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~-~-~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK-C-QAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH-H-HHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH-H-HHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 3679999999999999999999988777665433221111000000 0 00000000111245789999999987
Q ss_pred -ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCCC
Q 011953 422 -REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (474)
Q Consensus 422 -~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~d 466 (474)
++..+..+++++... .+.....+.++.+|+|||++..+|
T Consensus 142 ~~~~~~~~~l~~L~~~------~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 142 IGPRFSNLVLQALLVL------LKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp TTTBCCHHHHHHHHHH------TTCCCSTTCEEEEEEEESCHHHHH
T ss_pred CChhHHHHHHHHHHHH------hcCccCCCCCEEEEEecCChhhcc
Confidence 333334444444321 000111234578999999864333
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.75 E-value=1.6e-09 Score=108.16 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=38.2
Q ss_pred cCcccchHHHHHHHH---hhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc
Q 011953 313 CPQVFGLFTVKLAVA---LTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~---~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
+.+++|++.+++++. ..+..| ..+..++||+||||||||++|+++++.++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~----------~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREG----------KIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTT----------CCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcC----------CCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 567899999988743 223332 011357999999999999999999988763
No 58
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.75 E-value=1.3e-09 Score=104.63 Aligned_cols=136 Identities=20% Similarity=0.226 Sum_probs=74.8
Q ss_pred cCcccchHHHHHHHHhhhhCCcee---ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH---VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~---~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~ 389 (474)
+.+|.|.+.+|+.+...+...... ...-+ +..+.+++|+||||||||+|+++++...+..++...........
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~--l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~-- 84 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALG--LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY-- 84 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTT--CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC--CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh--
Confidence 457889999998886554322111 11111 22234599999999999999999999887765544221110000
Q ss_pred EEEeeCCeeeeeccccc----cCCceEEEEcCCCCCChH-----------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeE
Q 011953 390 TAVKDGGEWMLEAGALV----LADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (474)
Q Consensus 390 ~~~~~~~~~~~~~g~l~----~a~~gil~iDEid~~~~~-----------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~ 454 (474)
.+......+.+. ...+.++++||++.+... ..+.+...|+.+. ....+.
T Consensus 85 -----~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i 148 (274)
T 2x8a_A 85 -----VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVF 148 (274)
T ss_dssp -----THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STTCEE
T ss_pred -----hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEE
Confidence 000000011111 124679999999986421 1223333443221 123468
Q ss_pred EEEeecCCCCCCCC
Q 011953 455 IFGATNPKGHYDPN 468 (474)
Q Consensus 455 viaatNp~~~~d~~ 468 (474)
++|+||.+..+|++
T Consensus 149 ~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 149 IMAATNRPDIIDPA 162 (274)
T ss_dssp EEEEESCGGGSCHH
T ss_pred EEeecCChhhCCHh
Confidence 89999988777765
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=6.1e-09 Score=103.20 Aligned_cols=127 Identities=19% Similarity=0.156 Sum_probs=78.8
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc------eEEEeCCCcccC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR------SVITTGLGSTSA 385 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~------~~~~~~~~~~~~ 385 (474)
-+.+++|++.+++.+...+..|. ..|+||+||||||||++++++++.... .+........ .
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~ 101 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN------------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE-R 101 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT------------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC-C
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC------------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc-c
Confidence 34578999999999888776641 145999999999999999999987532 2222221110 0
Q ss_pred CceEEEEeeC-Ceeeee---------ccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEE
Q 011953 386 GLTVTAVKDG-GEWMLE---------AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (474)
Q Consensus 386 ~l~~~~~~~~-~~~~~~---------~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~v 455 (474)
+.. ..++. ..+... .+....+..+|++|||++.+.+..++.|++.|++. +.++.+
T Consensus 102 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~ 166 (353)
T 1sxj_D 102 GIS--IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-------------SGVTRF 166 (353)
T ss_dssp CHH--HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEE
T ss_pred chH--HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-------------CCCceE
Confidence 000 00000 000000 00011235679999999999999999999999863 124567
Q ss_pred EEeecCCCCCC
Q 011953 456 FGATNPKGHYD 466 (474)
Q Consensus 456 iaatNp~~~~d 466 (474)
|.++|.+..++
T Consensus 167 il~~~~~~~l~ 177 (353)
T 1sxj_D 167 CLICNYVTRII 177 (353)
T ss_dssp EEEESCGGGSC
T ss_pred EEEeCchhhCc
Confidence 77788764443
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=3.8e-09 Score=103.34 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=79.0
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc-----eEEEeCCCcccCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAG 386 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-----~~~~~~~~~~~~~ 386 (474)
-+.+++|++.++..+...+..| + ..|+||+||||||||++|+++++.... .++....... .+
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~-~~ 89 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG-----------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE-RG 89 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT-----------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH-HH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc-Cc
Confidence 3457899999999888766553 0 136999999999999999999987421 1222111100 00
Q ss_pred ceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 387 LTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 387 l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
.. ..++. ..+ ...+.+..+.+++++|||++.++.+.+++|+..|+.. +..+.+|+++|.+..+
T Consensus 90 ~~--~~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 90 IN--VIREKVKEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSSKI 153 (327)
T ss_dssp HH--TTHHHHHHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGS
T ss_pred hH--HHHHHHHHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcccc
Confidence 00 00000 000 0112223356789999999999999999999999862 2345778888775444
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.72 E-value=1.9e-09 Score=105.08 Aligned_cols=126 Identities=21% Similarity=0.196 Sum_probs=78.5
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC-----ceEEEeCCCcccCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAG 386 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~-----~~~~~~~~~~~~~~ 386 (474)
.+.+++|++.+++.+...+..+ ...|+||+||||||||++|+++++... ..++....... .+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~ 81 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE-RG 81 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST-TC
T ss_pred CHHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc-cC
Confidence 3456889999999888766543 113599999999999999999998641 12222211111 00
Q ss_pred ceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 387 LTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 387 l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
... .++. ..+ .....+..+.+++++|||++.++.+.++.|+..|+. .+.++.+|+++|.+..+
T Consensus 82 ~~~--~~~~~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 82 IDV--VRHKIKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVSRI 145 (319)
T ss_dssp TTT--SSHHHHHH-HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGGGS
T ss_pred hHH--HHHHHHHH-HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChhhc
Confidence 000 0000 000 000111124578999999999999888888888874 13457788888876544
Q ss_pred C
Q 011953 466 D 466 (474)
Q Consensus 466 d 466 (474)
+
T Consensus 146 ~ 146 (319)
T 2chq_A 146 I 146 (319)
T ss_dssp C
T ss_pred c
Confidence 4
No 62
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=6.2e-09 Score=125.40 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=68.7
Q ss_pred cccceecCCCCcchhHHHHH-HHHhcCceEEEeCCCcccCC-ceEEEEeeC-Ceeeeecccc----ccCCceEEEEcCCC
Q 011953 347 ESHLLLVGDPGTGKSQFLKF-AAKLSNRSVITTGLGSTSAG-LTVTAVKDG-GEWMLEAGAL----VLADGGLCCIDEFD 419 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~-ia~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~~~~g~l----~~a~~gil~iDEid 419 (474)
..|+||+||||||||++|+. ++...+..+......+.... ......... .......|.+ ....+.|+||||+|
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 47899999999999999954 54443444443322221100 000000000 0000011111 12345699999998
Q ss_pred CCChH------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCC
Q 011953 420 SMREH------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG 463 (474)
Q Consensus 420 ~~~~~------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~ 463 (474)
....+ ..+.|.+.||.+.+...+.+....+ .++.+||||||++
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPT 1395 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTT
T ss_pred cccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCc
Confidence 76443 5788999999887776555555555 5799999999984
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.68 E-value=2.6e-09 Score=95.28 Aligned_cols=50 Identities=26% Similarity=0.254 Sum_probs=39.1
Q ss_pred hcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 310 ~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..-..+++|++...+.+...+..+ ...++||+||||||||++|+++++..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344567889998888877666542 12579999999999999999999875
No 64
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.67 E-value=1.2e-08 Score=94.65 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=77.2
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCC--cc------
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG--ST------ 383 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~--~~------ 383 (474)
...+++|++.++..+...+..+ +....++|+||||||||++++.+++............ ..
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3457899999998888777553 1123599999999999999999997654311100000 00
Q ss_pred -cCCceEEEEeeC-C-eeeeec----ccc----ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCC
Q 011953 384 -SAGLTVTAVKDG-G-EWMLEA----GAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTR 452 (474)
Q Consensus 384 -~~~l~~~~~~~~-~-~~~~~~----g~l----~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~ 452 (474)
............ . ...... ..+ ....+.+++|||++.+..+.+..|...+++. +.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~ 156 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEH 156 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTT
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCc
Confidence 000000000010 0 000000 000 1224679999999999998999999998752 335
Q ss_pred eEEEEeecCCCCCC
Q 011953 453 TIIFGATNPKGHYD 466 (474)
Q Consensus 453 ~~viaatNp~~~~d 466 (474)
+.+|+++|.+..++
T Consensus 157 ~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 157 VKFLLATTDPQKLP 170 (250)
T ss_dssp EEEEEEESCGGGSC
T ss_pred eEEEEEeCChHhCC
Confidence 67888887654443
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.67 E-value=4.7e-09 Score=93.84 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=40.6
Q ss_pred hhhcccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 308 l~~~~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
....-+.+++|++...+.+...+..+ ...+++|+||||||||++++++++..
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhccccccccchHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 33445567889999888887766552 12569999999999999999999875
No 66
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.65 E-value=1.9e-08 Score=99.32 Aligned_cols=133 Identities=24% Similarity=0.319 Sum_probs=78.8
Q ss_pred cccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEee
Q 011953 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (474)
Q Consensus 315 ~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~ 394 (474)
+++|++.++..+...+-.|... + ....+++|+||||+|||+|+++++...+..+......... .
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~----~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~---------~ 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMR----G---EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV---------K 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHH----T---CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC---------S
T ss_pred HccCcHHHHHHHHHHHHHHHhc----C---CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc---------C
Confidence 5678888888887776543110 0 1125799999999999999999999886544322100000 0
Q ss_pred CCeeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEE--EEc---CeeEeeCCCeEEEEeecCCCCCC
Q 011953 395 GGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISV--AKA---GLVTTLSTRTIIFGATNPKGHYD 466 (474)
Q Consensus 395 ~~~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i--~~~---g~~~~~~~~~~viaatNp~~~~d 466 (474)
.+. . ...+ ....+.|+||||++.+.+..++.|+.+|+...+.+ ... ......-.++.+++++|+++.++
T Consensus 90 ~~~--l-~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls 164 (334)
T 1in4_A 90 QGD--M-AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS 164 (334)
T ss_dssp HHH--H-HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC
T ss_pred HHH--H-HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCC
Confidence 000 0 0001 12356799999999999888888888888643211 000 00001123567888888766554
No 67
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.64 E-value=3.7e-09 Score=116.16 Aligned_cols=140 Identities=20% Similarity=0.181 Sum_probs=82.5
Q ss_pred cCcccchHHHHHHHHhhhhCCcee-ecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEE
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~ 391 (474)
+.+|.|++.+++.+...+...... .......++...++||+||||||||+||++++...+..++............
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~--- 279 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA--- 279 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh---
Confidence 456889888776665544321110 1111223445578999999999999999999999887766543211110000
Q ss_pred EeeCCeeeeecccc----ccCCceEEEEcCCCCCCh-----------HhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEE
Q 011953 392 VKDGGEWMLEAGAL----VLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (474)
Q Consensus 392 ~~~~~~~~~~~g~l----~~a~~gil~iDEid~~~~-----------~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~vi 456 (474)
+......+.+ ....++++||||++.+.+ .....|+..|+... ....+.+|
T Consensus 280 ----g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI 344 (806)
T 1ypw_A 280 ----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVM 344 (806)
T ss_dssp ----THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEE
T ss_pred ----hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEe
Confidence 1000000111 122468999999987643 23455666665321 12467899
Q ss_pred EeecCCCCCCCCCC
Q 011953 457 GATNPKGHYDPNLC 470 (474)
Q Consensus 457 aatNp~~~~d~~~~ 470 (474)
+|||++..+|++..
T Consensus 345 ~atn~~~~ld~al~ 358 (806)
T 1ypw_A 345 AATNRPNSIDPALR 358 (806)
T ss_dssp EECSCTTTSCTTTT
T ss_pred cccCCchhcCHHHh
Confidence 99999888887643
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.62 E-value=1.5e-08 Score=104.59 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=63.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc----------CceEEEeCCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGS 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~----------~~~~~~~~~~~ 382 (474)
...|+|++...+.+...+..+ ...|+||+||||||||++|+++++.. +..++.....
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-
Confidence 345889999988887766542 12579999999999999999999875 3334332221
Q ss_pred ccCCceEEEEeeCCeeeeec----cccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 383 TSAGLTVTAVKDGGEWMLEA----GALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 383 ~~~~l~~~~~~~~~~~~~~~----g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
.. .. |.+.... ..+..+.++|+||| ...+.++.|..+|+.+ .+.+|+|
T Consensus 246 ------~~-~~--g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v~vI~a 297 (468)
T 3pxg_A 246 ------TK-YR--GEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGA 297 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEE
T ss_pred ------cc-cc--chHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------------CEEEEec
Confidence 00 00 1111111 11223457899999 3444555666666543 4679999
Q ss_pred ecCCC
Q 011953 459 TNPKG 463 (474)
Q Consensus 459 tNp~~ 463 (474)
||+..
T Consensus 298 t~~~e 302 (468)
T 3pxg_A 298 TTLDE 302 (468)
T ss_dssp CCTTT
T ss_pred CCHHH
Confidence 99864
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=1.4e-08 Score=100.46 Aligned_cols=123 Identities=21% Similarity=0.266 Sum_probs=76.4
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc-----eEEEeCCCcccCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAG 386 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~-----~~~~~~~~~~~~~ 386 (474)
-+.+++|++.++..+...+-.|. -.|+||+||||||||++++++++.... .+....... ..+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~------------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-~~~ 89 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK------------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD-DRG 89 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC------------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS-CCS
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC------------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc-ccc
Confidence 34568899999998887776651 135999999999999999999987431 121111110 000
Q ss_pred ceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCC
Q 011953 387 LTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG 463 (474)
Q Consensus 387 l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~ 463 (474)
.. ..++. +.+ ........+...+++|||++.++.+.+++|+..||+. +..+.+|.++|.+.
T Consensus 90 ~~--~ir~~i~~~-~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 90 ID--VVRNQIKDF-ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYAH 151 (340)
T ss_dssp HH--HHHTHHHHH-HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG
T ss_pred HH--HHHHHHHHH-HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCcc
Confidence 00 00000 000 0001112234679999999999999999999999862 23456777777653
No 70
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=5.1e-08 Score=97.22 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=75.9
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCc--------
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS-------- 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~-------- 382 (474)
+.+++|++.++..+...+..| +....+||+||||||||++++++++......... .++.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 456899999998888777553 1123489999999999999999998654311000 0000
Q ss_pred --ccCCceEEEEeeCC-eeeeeccc----c----ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCC
Q 011953 383 --TSAGLTVTAVKDGG-EWMLEAGA----L----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLST 451 (474)
Q Consensus 383 --~~~~l~~~~~~~~~-~~~~~~g~----l----~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~ 451 (474)
....+.. ....+ ........ + ....+.|++|||++.++.+.++.|+..+++ .+.
T Consensus 84 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~ 148 (373)
T 1jr3_A 84 QGRFVDLIE--IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPE 148 (373)
T ss_dssp TSCCSSCEE--EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCS
T ss_pred ccCCCceEE--ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCC
Confidence 0001110 00000 00000000 0 122457999999999999999999999985 134
Q ss_pred CeEEEEeecCCCCC
Q 011953 452 RTIIFGATNPKGHY 465 (474)
Q Consensus 452 ~~~viaatNp~~~~ 465 (474)
.+.+|+++|.+..+
T Consensus 149 ~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 149 HVKFLLATTDPQKL 162 (373)
T ss_dssp SEEEEEEESCGGGS
T ss_pred ceEEEEEeCChHhC
Confidence 56777777754433
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=5.7e-08 Score=94.72 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=77.6
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC-----ceEEEeCCCcccCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAG 386 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~-----~~~~~~~~~~~~~~ 386 (474)
.+.+++|++.++..+...+..+ + ..|+||+||||||||++|+++++... ..++....... .+
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~ 85 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDG-----------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD-RG 85 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSC-----------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC-CS
T ss_pred CHHHHHCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc-cC
Confidence 3456889999999888776553 1 13599999999999999999997642 22332221111 00
Q ss_pred ceEEEEeeC-CeeeeeccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCCCC
Q 011953 387 LTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (474)
Q Consensus 387 l~~~~~~~~-~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~~~ 465 (474)
.. ..++. ..+......+......+++|||++.+..+.++.|+..+++. +..+.+|.+||.+..+
T Consensus 86 ~~--~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~~l 150 (323)
T 1sxj_B 86 ID--VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSNKI 150 (323)
T ss_dssp HH--HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGGGS
T ss_pred hH--HHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChhhc
Confidence 00 00000 00000000111224679999999999999999999999862 2356777888775444
Q ss_pred C
Q 011953 466 D 466 (474)
Q Consensus 466 d 466 (474)
.
T Consensus 151 ~ 151 (323)
T 1sxj_B 151 I 151 (323)
T ss_dssp C
T ss_pred h
Confidence 3
No 72
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.50 E-value=4.2e-09 Score=99.65 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 314 PQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.++.|++.+|..+..... ++......-+ ++-+.+++|+||||||||+|+++++.....+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTT--CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcC--CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 456777777665543221 1110000011 1223459999999999999999999988755544
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.50 E-value=3.9e-08 Score=107.73 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=64.6
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc----------CceEEEeCCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGS 382 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~----------~~~~~~~~~~~ 382 (474)
...++|++...+.+...+..+ ...|+||+||||||||++|+++|+.. +..++....
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--
Confidence 346899999999888777552 23679999999999999999999875 333433222
Q ss_pred ccCCceEEEEeeCCeeeee----ccccccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEe
Q 011953 383 TSAGLTVTAVKDGGEWMLE----AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (474)
Q Consensus 383 ~~~~l~~~~~~~~~~~~~~----~g~l~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaa 458 (474)
....+ |.+... .+.+..+.++|+||| ...+.++.|..+|+.+ .+.+|+|
T Consensus 245 ------g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v~~I~a 297 (758)
T 3pxi_A 245 ------GTKYR--GEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------ELQCIGA 297 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SCEEEEE
T ss_pred ------ccccc--chHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------------CEEEEeC
Confidence 00001 111111 112223467899999 3334555566666532 4679999
Q ss_pred ecCCC
Q 011953 459 TNPKG 463 (474)
Q Consensus 459 tNp~~ 463 (474)
||+..
T Consensus 298 t~~~~ 302 (758)
T 3pxi_A 298 TTLDE 302 (758)
T ss_dssp CCTTT
T ss_pred CChHH
Confidence 99865
No 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=1.9e-07 Score=97.63 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=70.1
Q ss_pred cCcccchHHHHHHHHhhhhCCceee----cCCCC-ceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHV----DASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGL 387 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~----~~~~~-~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l 387 (474)
+.+++|++.+++.+...+....... ...|. ......++||+||||||||++|+++++.++..++...........
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~ 117 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT 117 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHH
Confidence 3468899998888877665421100 00000 001235799999999999999999999998777665443221100
Q ss_pred e-EEEEeeCCeeeeeccc--------cccCCceEEEEcCCCCCChHhH---HHHHHHHHh
Q 011953 388 T-VTAVKDGGEWMLEAGA--------LVLADGGLCCIDEFDSMREHDR---ATIHEAMEQ 435 (474)
Q Consensus 388 ~-~~~~~~~~~~~~~~g~--------l~~a~~gil~iDEid~~~~~~~---~~l~~~me~ 435 (474)
. ..............+. .....++|++|||+|.+....+ ..|...++.
T Consensus 118 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 118 LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 0 0000000000000011 1124568999999999977655 667777765
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=5.9e-07 Score=88.95 Aligned_cols=45 Identities=20% Similarity=0.025 Sum_probs=36.0
Q ss_pred cCcccchHHHHHHHHhhh-hCCceeecCCCCceeccccceecCCCCcchhHHHHHHHH
Q 011953 313 CPQVFGLFTVKLAVALTL-IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l-~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
+.+++|++.++..+...+ ..+ +. .|++|+||||+|||++++++++
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~-----------~~-~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR-----------DL-PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT-----------CC-CCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCC-----------CC-CeEEEECCCCCCHHHHHHHHHH
Confidence 356889999998888766 332 11 3499999999999999999998
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.44 E-value=1e-08 Score=98.46 Aligned_cols=139 Identities=22% Similarity=0.249 Sum_probs=70.0
Q ss_pred cCcccchHHHHHHHHhhhh--CCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEE
Q 011953 313 CPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~ 390 (474)
+.+++|++.+|+.+.-... +.......-+ ++-+.+++|+||||||||+|+++++...+..++...........
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~--~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~--- 113 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF--- 113 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTT--CCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST---
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcC--CCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH---
Confidence 3456777777665543221 1110000011 11224599999999999999999999887555443211000000
Q ss_pred EEeeCCeeeeeccccc----cCCceEEEEcCCCCCC-----------hHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEE
Q 011953 391 AVKDGGEWMLEAGALV----LADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (474)
Q Consensus 391 ~~~~~~~~~~~~g~l~----~a~~gil~iDEid~~~-----------~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~v 455 (474)
.+......+.+. ...++++++||++.+. ...+..+.+.+.. ..|.. .+..+.+
T Consensus 114 ----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~------lsgg~--~~~~~i~ 181 (278)
T 1iy2_A 114 ----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE------MDGFE--KDTAIVV 181 (278)
T ss_dssp ----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHH------HTTCC--TTCCEEE
T ss_pred ----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHH------HhCCC--CCCCEEE
Confidence 000000001111 1235799999998652 1122333333322 01111 1234688
Q ss_pred EEeecCCCCCCCC
Q 011953 456 FGATNPKGHYDPN 468 (474)
Q Consensus 456 iaatNp~~~~d~~ 468 (474)
+|++|.+..+|++
T Consensus 182 ~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 182 MAATNRPDILDPA 194 (278)
T ss_dssp EEEESCTTSSCHH
T ss_pred EEecCCchhCCHh
Confidence 9999988777764
No 77
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.43 E-value=2.8e-07 Score=111.33 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=79.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~ 427 (474)
.++++.||||||||.+++++|+.+++.++...+.... ..... +. .-.| ....|.++|+|||++++++...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l---d~~~l---g~--~~~g--~~~~Gaw~~~DE~nr~~~evLs 715 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF---DYQVL---SR--LLVG--ITQIGAWGCFDEFNRLDEKVLS 715 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC---CHHHH---HH--HHHH--HHHHTCEEEEETTTSSCHHHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC---ChhHh---hH--HHHH--HHhcCCEeeehhhhhcChHHHH
Confidence 5589999999999999999999999998887665432 11000 00 0011 1124679999999999999888
Q ss_pred HH-------HHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 428 TI-------HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 428 ~l-------~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
.+ .+++.++..++...|....++..+.+++|+||.
T Consensus 716 ~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg 757 (2695)
T 4akg_A 716 AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG 757 (2695)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC
Confidence 87 677777666666778888889999999999993
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.42 E-value=1e-07 Score=105.71 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=63.2
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc----------CceEEEeCCC
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLG 381 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~----------~~~~~~~~~~ 381 (474)
-...++|++.....+...+..+ ...|+||+||||||||++++.+++.. +..++.....
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred CCcccCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 3445789888888777666543 12579999999999999999999875 4445444322
Q ss_pred cccCCceEEEEeeCCeeeeecccc----cc-CCceEEEEcCCCCCC--------hHhHHHHHHHHHhcEEEEEEcCeeEe
Q 011953 382 STSAGLTVTAVKDGGEWMLEAGAL----VL-ADGGLCCIDEFDSMR--------EHDRATIHEAMEQQTISVAKAGLVTT 448 (474)
Q Consensus 382 ~~~~~l~~~~~~~~~~~~~~~g~l----~~-a~~gil~iDEid~~~--------~~~~~~l~~~me~~~~~i~~~g~~~~ 448 (474)
....+ .... +.+......+ .. ..+.|+||||++.+. .+..+.|..+++.+
T Consensus 236 ~l~~g---~~~~--g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~------------ 298 (854)
T 1qvr_A 236 SLLAG---AKYR--GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG------------ 298 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT------------
T ss_pred Hhhcc---Cccc--hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC------------
Confidence 21110 0000 1111111111 11 135699999999986 33344566666543
Q ss_pred eCCCeEEEEeecCC
Q 011953 449 LSTRTIIFGATNPK 462 (474)
Q Consensus 449 ~~~~~~viaatNp~ 462 (474)
++.+|+|||++
T Consensus 299 ---~i~~I~at~~~ 309 (854)
T 1qvr_A 299 ---ELRLIGATTLD 309 (854)
T ss_dssp ---CCCEEEEECHH
T ss_pred ---CeEEEEecCch
Confidence 34588888864
No 79
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.40 E-value=2.5e-07 Score=92.43 Aligned_cols=134 Identities=17% Similarity=0.072 Sum_probs=72.5
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc---------CceEEEeCCCcc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---------NRSVITTGLGST 383 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~---------~~~~~~~~~~~~ 383 (474)
...++|.+.....+...+-.... + ....+++|+||||||||++++.+++.. +..++...+...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~-----~---~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR-----G---EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS-----S---CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 35788999988888766532100 0 123579999999999999999999876 444433332211
Q ss_pred cCC--ceEEE---Ee----eCCeeeee-ccc----ccc-CCceEEEEcCCCCCChH--hHHHHHHHHHhcEEEEEEcCee
Q 011953 384 SAG--LTVTA---VK----DGGEWMLE-AGA----LVL-ADGGLCCIDEFDSMREH--DRATIHEAMEQQTISVAKAGLV 446 (474)
Q Consensus 384 ~~~--l~~~~---~~----~~~~~~~~-~g~----l~~-a~~gil~iDEid~~~~~--~~~~l~~~me~~~~~i~~~g~~ 446 (474)
... +.... .. ..+..... ... +.. ..+.+++|||++.+... .+..|...++...- .
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~------~- 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE------L- 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC------C-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh------c-
Confidence 100 00000 00 00000000 000 001 12449999999999765 66777776653110 0
Q ss_pred EeeCCCeEEEEeecCC
Q 011953 447 TTLSTRTIIFGATNPK 462 (474)
Q Consensus 447 ~~~~~~~~viaatNp~ 462 (474)
..+.++.+|+++|.+
T Consensus 163 -~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 163 -GDRVWVSLVGITNSL 177 (387)
T ss_dssp ------CEEEEECSCS
T ss_pred -CCCceEEEEEEECCC
Confidence 003467899999875
No 80
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.38 E-value=1.7e-07 Score=113.69 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred cccceecCCCCcchhHHHHHH-HHhcCceEEEeCCCcccC--CceEEEEeeCCeeeeec--cccccC----CceEEEEcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFA-AKLSNRSVITTGLGSTSA--GLTVTAVKDGGEWMLEA--GALVLA----DGGLCCIDE 417 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~i-a~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~--g~l~~a----~~gil~iDE 417 (474)
..|+||+||||||||++++.. ++..+..+.....++... .+..... ...+..... |.+..+ ...|+||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e-~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFD-HHCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHH-HHEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHh-hcceEEeccCCCcccCCCcCCceEEEEecc
Confidence 478999999999999877554 444444444443332211 0100000 000011111 333332 346999999
Q ss_pred CCCCChH------hHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCCC
Q 011953 418 FDSMREH------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG 463 (474)
Q Consensus 418 id~~~~~------~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~~ 463 (474)
++....+ ..+.|++.|+.+.+...+.+....+ .++.+|||+||++
T Consensus 1383 iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~ 1433 (3245)
T 3vkg_A 1383 INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPT 1433 (3245)
T ss_dssp TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTT
T ss_pred cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCC
Confidence 9987654 6788999999998876545555655 6899999999984
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.35 E-value=1e-07 Score=104.46 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++|++...+.+...|... ...|+||+||||||||++|+++++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45789888887777666542 23679999999999999999999765
No 82
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.35 E-value=7.5e-07 Score=77.07 Aligned_cols=69 Identities=14% Similarity=0.302 Sum_probs=47.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc----eEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCCh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~ 423 (474)
..++|+||+|+|||+|+++++..... ..+..+. . +. .. . ...+..+++|||++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~-~----~~-----------~~--~-~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA-S----MP-----------LT--D-AAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT-T----SC-----------CC--G-GGGGCSEEEEESTTCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH-H----hh-----------HH--H-HHhCCCEEEEeCccccCh
Confidence 45999999999999999999987632 1121110 0 00 00 1 133567999999999987
Q ss_pred HhHHHHHHHHHh
Q 011953 424 HDRATIHEAMEQ 435 (474)
Q Consensus 424 ~~~~~l~~~me~ 435 (474)
..+..+.+.++.
T Consensus 98 ~~~~~l~~li~~ 109 (149)
T 2kjq_A 98 EEQALLFSIFNR 109 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778888888764
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.31 E-value=3.9e-07 Score=89.82 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=67.5
Q ss_pred hHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCceEEEe--CCCc----------ccCC
Q 011953 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS----------TSAG 386 (474)
Q Consensus 319 ~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~--~~~~----------~~~~ 386 (474)
++.+.+.+.-++-.| +..+.+||+||||||||++|+++++......... .++. ....
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 345555555555554 1124499999999999999999998653211000 0000 0001
Q ss_pred ceEEEEeeC---Ceeee--------ecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeE
Q 011953 387 LTVTAVKDG---GEWML--------EAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (474)
Q Consensus 387 l~~~~~~~~---~~~~~--------~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~ 454 (474)
+. ..... ..... ..... ..+...|++|||+|.|+.+.+++|+..||+- +.++.
T Consensus 76 ~~--~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~ 140 (334)
T 1a5t_A 76 YY--TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETW 140 (334)
T ss_dssp EE--EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEE
T ss_pred EE--EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeE
Confidence 11 01000 00000 00000 1234679999999999999999999999852 23456
Q ss_pred EEEeecCCCCC
Q 011953 455 IFGATNPKGHY 465 (474)
Q Consensus 455 viaatNp~~~~ 465 (474)
+|.+||.+.++
T Consensus 141 ~Il~t~~~~~l 151 (334)
T 1a5t_A 141 FFLATREPERL 151 (334)
T ss_dssp EEEEESCGGGS
T ss_pred EEEEeCChHhC
Confidence 66667655444
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=5.2e-07 Score=87.66 Aligned_cols=101 Identities=8% Similarity=0.048 Sum_probs=58.9
Q ss_pred chHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC------ceEEEeCCCcccCCceEEE
Q 011953 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN------RSVITTGLGSTSAGLTVTA 391 (474)
Q Consensus 318 G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~------~~~~~~~~~~~~~~l~~~~ 391 (474)
|++.+.+.+...+-.| + ..++||+||||+|||++|+++++..+ ..++........ .....
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~--~~id~ 66 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGEN--IGIDD 66 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSC--BCHHH
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCC--CCHHH
Confidence 5666666666666554 1 25799999999999999999997521 122222111000 00000
Q ss_pred EeeCCeeeeecccc-ccCCceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 392 VKDGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 392 ~~~~~~~~~~~g~l-~~a~~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
++ .....+... ..+...|++|||+|.|+.+.+++|+..||+
T Consensus 67 ir---~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe 108 (305)
T 2gno_A 67 IR---TIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE 108 (305)
T ss_dssp HH---HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS
T ss_pred HH---HHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC
Confidence 00 000000000 123457999999999999999999999996
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=1.6e-07 Score=83.82 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=55.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC----ceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCC--CC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFD--SM 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid--~~ 421 (474)
.+++|+||||||||+|+++++.... ..+...........+... ...+. .....-...+..+++|||++ .+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~llilDE~~~~~~ 114 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MDEGK--DTKFLKTVLNSPVLVLDDLGSERL 114 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HHHTC--CSHHHHHHHTCSEEEEETCSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hcCch--HHHHHHHhcCCCEEEEeCCCCCcC
Confidence 6699999999999999999997652 111111000000000000 00000 00000112356899999998 46
Q ss_pred ChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC-CCC
Q 011953 422 REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHY 465 (474)
Q Consensus 422 ~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~-~~~ 465 (474)
.+..+..+.+.++... .....+|.|||.+ ..|
T Consensus 115 ~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 115 SDWQRELISYIITYRY------------NNLKSTIITTNYSLQRE 147 (180)
T ss_dssp CHHHHHHHHHHHHHHH------------HTTCEEEEECCCCSCC-
T ss_pred CHHHHHHHHHHHHHHH------------HcCCCEEEEcCCChhHh
Confidence 6777778888776421 1134677888865 443
No 86
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.26 E-value=2.4e-07 Score=92.71 Aligned_cols=50 Identities=18% Similarity=0.069 Sum_probs=36.1
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|++...+.+...+..... + ....+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-----~---~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-----N---EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-----T---CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5788998887777654432100 0 112579999999999999999999865
No 87
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.5e-07 Score=88.25 Aligned_cols=102 Identities=6% Similarity=-0.035 Sum_probs=56.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC----------ceEEEeCCCcccC----------CceEEEEeeCCeeeeeccc---
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTGLGSTSA----------GLTVTAVKDGGEWMLEAGA--- 404 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~----------~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~g~--- 404 (474)
.+++|+||||||||++++++++.+. ..+..+++..... .+....... +........
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~-~~~~~~L~~~f~ 124 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCG-DISLEALNFYIT 124 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--C-CCCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHH
Confidence 6799999999999999999997652 1222222211100 010000000 000000000
Q ss_pred -c--ccCCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCCCeEEEEeecCC
Q 011953 405 -L--VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 405 -l--~~a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~~~~viaatNp~ 462 (474)
+ ......|++|||+|.+. .+..|+..++-.. .-..++.+|+++|..
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHN 173 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSS
T ss_pred HhhhccCCceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCc
Confidence 0 12235699999999998 5677777765210 113467899999875
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.23 E-value=4.4e-07 Score=81.97 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=54.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHh-H
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHD-R 426 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~-~ 426 (474)
.++|++||||||||++|.++++.....+.... .+ ...+. .-.+.+..+++|||++....+. .
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fa--ns-----------~s~f~----l~~l~~~kIiiLDEad~~~~~~~d 121 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFV--NS-----------TSHFW----LEPLTDTKVAMLDDATTTCWTYFD 121 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCC--CS-----------SSCGG----GGGGTTCSSEEEEEECHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE--ec-----------cchhh----hcccCCCCEEEEECCCchhHHHHH
Confidence 46999999999999999999987643322110 00 00010 0122345599999998532222 2
Q ss_pred HHHHHHHHhcEEEEEEcC-eeEeeCCCeEEEEeecCC
Q 011953 427 ATIHEAMEQQTISVAKAG-LVTTLSTRTIIFGATNPK 462 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~~g-~~~~~~~~~~viaatNp~ 462 (474)
..+..+++...+.+.+.- .....+ ...+|.|||-.
T Consensus 122 ~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~ 157 (212)
T 1tue_A 122 TYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIH 157 (212)
T ss_dssp HHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSC
T ss_pred HHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCC
Confidence 356667776655552211 111112 23688888863
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.22 E-value=1.9e-07 Score=91.50 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=48.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCcccCCceEEEEeeCCeeeeecccc--ccCCceEEEEcCCCCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL--VLADGGLCCIDEFDSMR 422 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l--~~a~~gil~iDEid~~~ 422 (474)
.+++|+||||||||++|+++++.. +..++..........+... ... + ....+ ...+.+++||||++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH-LKK-G----TINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH-HHH-T----CHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHc-C----cHHHHHHHhcCCCEEEEcCccccc
Confidence 579999999999999999999876 4444332211100000000 000 0 00000 01247899999999987
Q ss_pred h--HhHHHHHHHHHh
Q 011953 423 E--HDRATIHEAMEQ 435 (474)
Q Consensus 423 ~--~~~~~l~~~me~ 435 (474)
. ..+..+...++.
T Consensus 112 ~~~~~~~~l~~~l~~ 126 (324)
T 1l8q_A 112 GKERTQIEFFHIFNT 126 (324)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 5 567777777653
No 90
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.19 E-value=1.2e-06 Score=87.73 Aligned_cols=133 Identities=12% Similarity=-0.008 Sum_probs=73.4
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccc--cceecCCCCcchhHHHHHHHHhcC----ceEEEeCCCcccC-
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGES--HLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSA- 385 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~--~iLL~G~pGtGKs~la~~ia~~~~----~~~~~~~~~~~~~- 385 (474)
.+.++|++...+.+...+...... .... +++|+||||||||++++++++... ..+....+.....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 356889998877776655431100 0113 699999999999999999998763 2333332211110
Q ss_pred -CceEEEEeeCCe----eeeeccc-------ccc--CCceEEEEcCCCCCChHhHHHHHHHHHhcEEEEEEcCeeEeeCC
Q 011953 386 -GLTVTAVKDGGE----WMLEAGA-------LVL--ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLST 451 (474)
Q Consensus 386 -~l~~~~~~~~~~----~~~~~g~-------l~~--a~~gil~iDEid~~~~~~~~~l~~~me~~~~~i~~~g~~~~~~~ 451 (474)
.+.......-+. ....... ... ..+.+++|||++.++.+.+..|...+++.. . ....
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~----~-----~~~~ 158 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD----K-----LGAF 158 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH----H-----HSSC
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC----C-----CCcC
Confidence 000000000000 0000000 001 224599999999998888888888886420 0 0013
Q ss_pred CeEEEEeecCC
Q 011953 452 RTIIFGATNPK 462 (474)
Q Consensus 452 ~~~viaatNp~ 462 (474)
++.+|+++|.+
T Consensus 159 ~~~iI~~~~~~ 169 (389)
T 1fnn_A 159 RIALVIVGHND 169 (389)
T ss_dssp CEEEEEEESST
T ss_pred CEEEEEEECCc
Confidence 56788888764
No 91
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.18 E-value=1.1e-06 Score=81.51 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=47.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc---eEEEeCCCcccCCceEEEEeeCCeeeeecccc-ccCCceEEEEcCCCCCCh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMRE 423 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEid~~~~ 423 (474)
.+++|+||||||||++|+++++.... .+...........+ ...+ ....+++++|||++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--------------TALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--------------GGGGTTGGGSSEEEEETGGGGTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------------HHHHHhccCCCEEEEeccccccC
Confidence 57999999999999999999976542 22221111100000 0011 124568999999999976
Q ss_pred Hh--HHHHHHHHHh
Q 011953 424 HD--RATIHEAMEQ 435 (474)
Q Consensus 424 ~~--~~~l~~~me~ 435 (474)
.. +..+...++.
T Consensus 119 ~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 119 HPLWEEAIFDLYNR 132 (242)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55 7778887764
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.00 E-value=7.2e-06 Score=77.35 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=53.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccc-cCCceEEEEcCCCCCChHhH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMREHDR 426 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~-~a~~gil~iDEid~~~~~~~ 426 (474)
.+++|+||||||||++|.++++..+..-.+ . .+. ..+ .+. ..+.-+++.||.. +..+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~G~v-n-~~~------------~~f-----~l~~~~~k~i~l~Ee~~-~~~d~~ 164 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFYGCV-N-WTN------------ENF-----PFNDCVDKMVIWWEEGK-MTAKVV 164 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCEEEC-C-TTC------------SSC-----TTGGGSSCSEEEECSCC-EETTTH
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhccccee-e-ccc------------ccc-----ccccccccEEEEecccc-chhHHH
Confidence 469999999999999999999876542111 1 110 011 111 1234455666655 444566
Q ss_pred HHHHHHHHhcEEEEEEcCe-eEeeCCCeEEEEeecC
Q 011953 427 ATIHEAMEQQTISVAKAGL-VTTLSTRTIIFGATNP 461 (474)
Q Consensus 427 ~~l~~~me~~~~~i~~~g~-~~~~~~~~~viaatNp 461 (474)
..+..+++-..+.+..... .... .+..+|.|||-
T Consensus 165 ~~lr~i~~G~~~~id~K~k~~~~v-~~tPvIitsN~ 199 (267)
T 1u0j_A 165 ESAKAILGGSKVRVDQKCKSSAQI-DPTPVIVTSNT 199 (267)
T ss_dssp HHHHHHHTTCCEEC------CCEE-CCCCEEEEESS
T ss_pred HHHHHHhCCCcEEEecCcCCcccc-cCCCEEEEecC
Confidence 7888888866666533221 1122 34567888875
No 93
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.97 E-value=7.3e-07 Score=91.26 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=48.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc-----CceEEEeCCCcccCCceEEEEeeCCeeeeeccccc--cC-CceEEEEcCCC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS-----NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV--LA-DGGLCCIDEFD 419 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~--~a-~~gil~iDEid 419 (474)
.+++|+||||||||+||+++++.. +..++..........+... ... + ....+. .. ...+++|||++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDS-MKE-G----KLNEFREKYRKKVDILLIDDVQ 204 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHH-HHT-T----CHHHHHHHHTTTCSEEEEECGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHc-c----cHHHHHHHhcCCCCEEEEeCcc
Confidence 579999999999999999999865 3333222111000000000 000 0 000111 12 57899999999
Q ss_pred CCCh--HhHHHHHHHHHh
Q 011953 420 SMRE--HDRATIHEAMEQ 435 (474)
Q Consensus 420 ~~~~--~~~~~l~~~me~ 435 (474)
.+.. ..+..++..++.
T Consensus 205 ~l~~~~~~q~~l~~~l~~ 222 (440)
T 2z4s_A 205 FLIGKTGVQTELFHTFNE 222 (440)
T ss_dssp GGSSCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHH
Confidence 9875 577788887764
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.95 E-value=7.8e-07 Score=80.72 Aligned_cols=24 Identities=33% Similarity=0.348 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++|+||||||||+||++++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999765
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.86 E-value=1.8e-05 Score=96.47 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=71.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEEeeCCeeeeeccccccCCceEEEEcCCCCCChHhHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l~~a~~gil~iDEid~~~~~~~~ 427 (474)
.+..+.||+|||||.+++.+|+.+++.+++..+.... +.... +. +-.|. ...|+.+|+|||+++..+...
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~---d~~~~---g~--i~~G~--~~~GaW~cfDEfNrl~~~vLS 674 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF---DLQAM---SR--IFVGL--CQCGAWGCFDEFNRLEERILS 674 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC---CHHHH---HH--HHHHH--HHHTCEEEEETTTSSCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC---CHHHH---HH--HHhhH--hhcCcEEEehhhhcCCHHHHH
Confidence 3467889999999999999999999999887664432 11100 11 11221 124778999999999999888
Q ss_pred HHHHHHH-------hcEEEEEEc-CeeEeeCCCeEEEEeecC
Q 011953 428 TIHEAME-------QQTISVAKA-GLVTTLSTRTIIFGATNP 461 (474)
Q Consensus 428 ~l~~~me-------~~~~~i~~~-g~~~~~~~~~~viaatNp 461 (474)
.+.+.+. ++.-.+... |....++..+.+++|+||
T Consensus 675 vv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp 716 (3245)
T 3vkg_A 675 AVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP 716 (3245)
T ss_dssp HHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC
T ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC
Confidence 8766554 222223334 667788889999999998
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.85 E-value=1.1e-06 Score=85.46 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+++|+||||||||+||++++..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999997654
No 97
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.85 E-value=7.8e-06 Score=81.32 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=38.1
Q ss_pred ccCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhc
Q 011953 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...+++|.+...+.+...+..... + ....+++|+||||||||+|++.+++..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~-----~---~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR-----E---EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG-----T---CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc-----C---CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 335688999888887765543100 0 113579999999999999999999876
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.15 E-value=0.00041 Score=62.71 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.5
Q ss_pred cceecCCCCcchhHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia 368 (474)
..|++|+||+|||++|....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999988764
No 99
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.83 E-value=0.002 Score=57.28 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCChHhHHHHHHHHHhc
Q 011953 409 DGGLCCIDEFDSMREHDRATIHEAMEQQ 436 (474)
Q Consensus 409 ~~gil~iDEid~~~~~~~~~l~~~me~~ 436 (474)
+..+++|||+..++++....+...++.+
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~ 103 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRG 103 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCC
Confidence 3569999999999777777776676653
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0047 Score=63.16 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=47.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcC---c-eEEEeCCCcccC-------CceEE--------EEee-CCeeee-ecccccc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN---R-SVITTGLGSTSA-------GLTVT--------AVKD-GGEWML-EAGALVL 407 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~---~-~~~~~~~~~~~~-------~l~~~--------~~~~-~~~~~~-~~g~l~~ 407 (474)
++++.|+||||||+++.+++..+. . .+..+.....++ +..+. .... .....+ ....-..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 699999999999999998886542 2 233221111110 11110 0000 000001 0111122
Q ss_pred CCceEEEEcCCCCCChHhHHHHHHHHH
Q 011953 408 ADGGLCCIDEFDSMREHDRATIHEAME 434 (474)
Q Consensus 408 a~~gil~iDEid~~~~~~~~~l~~~me 434 (474)
....++++||+..++...+..|...+.
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred cCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 345799999999999887777777765
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.56 E-value=0.0012 Score=57.95 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=25.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|+|+|+||+|||++++.+++.++.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 348999999999999999999988766553
No 102
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.53 E-value=0.0014 Score=57.11 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=25.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..+.|+|+||+|||++++.++...+..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 459999999999999999999988765543
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.51 E-value=0.0012 Score=58.41 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=27.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.+|+|+|+||+|||++++.+++.++..++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999888776653
No 104
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.42 E-value=0.0015 Score=57.21 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=26.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.++|.|+||+|||++++.+++..+..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999887766543
No 105
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.42 E-value=0.0015 Score=58.73 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..++|+|+||+|||++++.+++..+..++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 5699999999999999999999887766643
No 106
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.36 E-value=0.0018 Score=56.23 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=25.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+|.|+||+|||++++.+++..+..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 388999999999999999998877666544
No 107
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.34 E-value=0.0017 Score=56.43 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=27.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.+|+|.|+||+|||++++.+++.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999877766653
No 108
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.0022 Score=56.45 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=26.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|+|+||+|||++++.+++..+..++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999998887766654
No 109
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.23 E-value=0.0024 Score=56.58 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=26.5
Q ss_pred ccceecCCCCcchhHHHHHHHHh-cCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL-SNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~-~~~~~~~~ 378 (474)
.+|+|+|+||+|||++++.+++. .+..++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 56999999999999999999998 67666553
No 110
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.19 E-value=0.0031 Score=57.73 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=21.8
Q ss_pred eccccceecCCCCcchhHHHHHHHHh
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
||..+|++.|+||+|||+++-.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999997777754
No 111
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.13 E-value=0.0028 Score=57.58 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=25.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+|+|+|+||+|||++++.+++..+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999998887766654
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0026 Score=56.17 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=25.8
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+|+|+||+|||++++.+++..+..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999877766653
No 113
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.08 E-value=0.0034 Score=54.42 Aligned_cols=29 Identities=41% Similarity=0.659 Sum_probs=24.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+|.|+||+|||++++.+ +..+..++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 7777766653
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.07 E-value=0.0029 Score=56.09 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=23.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
..+.|+||||+|||++++.++.....+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 458999999999999999999875443
No 115
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.07 E-value=0.003 Score=57.57 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=26.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|+|+||+|||++++.+++..+..++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4699999999999999999999887766554
No 116
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.05 E-value=0.0066 Score=58.01 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-++|.||||+|||++++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5599999999999999999998764
No 117
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.05 E-value=0.0025 Score=57.77 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=26.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~ 379 (474)
.|+|.||||+||++.|+.+++..+...+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 3789999999999999999998887766653
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.05 E-value=0.0029 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.3
Q ss_pred cceecCCCCcchhHHHHHHHH-hcCceE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK-LSNRSV 375 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~-~~~~~~ 375 (474)
-|+|.|+||+|||++++.+++ ..+...
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 489999999999999999998 444333
No 119
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.02 E-value=0.0033 Score=58.89 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=25.2
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
++|+||||+|||++++.+++..+..++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 78999999999999999998887666543
No 120
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.01 E-value=0.0033 Score=54.65 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=25.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.|+|.|+||+|||++++.+++.++..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999987776654
No 121
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.00 E-value=0.0057 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..++|+|+||+|||++++.+++..+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 56999999999999999999988764
No 122
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.96 E-value=0.0036 Score=54.72 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..++|+|+||+|||++++.++...+..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 458999999999999999999877765554
No 123
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.96 E-value=0.0033 Score=57.00 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+|.|+||+|||++++.+++..+...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999988777666544
No 124
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.95 E-value=0.0036 Score=55.19 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 459999999999999999999877765554
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.95 E-value=0.0034 Score=55.62 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=25.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|+|.|+||+|||++++.+++..+..++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 459999999999999999999877665544
No 126
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.95 E-value=0.0035 Score=56.19 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=26.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|+|+||+|||++++.+++..+..++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4599999999999999999998877666653
No 127
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.93 E-value=0.01 Score=58.42 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=46.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcC----ceEEEeCCCcccC--C-ceEEEEeeCCe-eeeecccc---ccCCceEEEEcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSA--G-LTVTAVKDGGE-WMLEAGAL---VLADGGLCCIDE 417 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~----~~~~~~~~~~~~~--~-l~~~~~~~~~~-~~~~~g~l---~~a~~gil~iDE 417 (474)
.++++||+|+|||+++++++...+ ..+++........ . .........+. ......++ ...++.++++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 499999999999999999987643 2333322111100 0 00000111110 00001111 234789999999
Q ss_pred CCCCChHhHHHHHHHHHhcE
Q 011953 418 FDSMREHDRATIHEAMEQQT 437 (474)
Q Consensus 418 id~~~~~~~~~l~~~me~~~ 437 (474)
.- ..+....+.++.+.|.
T Consensus 205 p~--d~e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 205 MR--DLETIRLALTAAETGH 222 (356)
T ss_dssp CC--SHHHHHHHHHHHHTTC
T ss_pred CC--CHHHHHHHHHHHhcCC
Confidence 97 4555555566665543
No 128
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.92 E-value=0.0033 Score=55.26 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
..|+|.|+||+|||++++.+++.++..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45999999999999999999988887665
No 129
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.92 E-value=0.0037 Score=56.09 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4599999999999999999998877655543
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.90 E-value=0.0041 Score=55.84 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..+.|+|+||+|||++++.++...+..++.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 458999999999999999999887665443
No 131
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.83 E-value=0.0048 Score=54.61 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|+|.|+||+|||++++.+++..+..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999877765554
No 132
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.79 E-value=0.0064 Score=54.13 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=23.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
..|+|+||+|+|||+|++.+.+..+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3489999999999999999988766533
No 133
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.79 E-value=0.0046 Score=53.54 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.2
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.|+|.|+||+|||++++.+++..+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 38999999999999999999977766654
No 134
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.77 E-value=0.004 Score=57.90 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=26.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+...+.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5699999999999999999998777766654
No 135
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.77 E-value=0.0044 Score=55.06 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|.|.|+||+|||++++.+++..+..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 459999999999999999999887766654
No 136
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.76 E-value=0.0034 Score=57.42 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=26.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.-|+|+||||+||++.|+.+++..+...+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 4588999999999999999999887766554
No 137
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.74 E-value=0.0044 Score=54.71 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..|+|.|+||+|||++++.+++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3599999999999999999998665
No 138
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.73 E-value=0.0052 Score=56.63 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=27.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+..++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999887766654
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.70 E-value=0.0044 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=21.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
++.|+||+|+|||+|++.++...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998765
No 140
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.67 E-value=0.0055 Score=56.13 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=26.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+...+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4599999999999999999998887766643
No 141
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.64 E-value=0.0056 Score=54.48 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=25.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|+|.|+||+|||++++.+++..+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 459999999999999999999987766554
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.63 E-value=0.0049 Score=56.27 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=25.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.|+|+||+|||++++.+++..+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3589999999999999999998776555543
No 143
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.60 E-value=0.0057 Score=55.68 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=26.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4599999999999999999999887766654
No 144
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.60 E-value=0.0058 Score=53.96 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=26.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3589999999999999999998877666543
No 145
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.60 E-value=0.0085 Score=59.83 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=35.0
Q ss_pred ccCcccchHHHHHHHHhhh-h---CCceeecCCCCceecccccee--cCCCCcchhHHHHHHHHhc
Q 011953 312 ICPQVFGLFTVKLAVALTL-I---GGVQHVDASGTKVRGESHLLL--VGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 312 ~~p~i~G~~~~K~ai~~~l-~---~g~~~~~~~~~~~r~~~~iLL--~G~pGtGKs~la~~ia~~~ 371 (474)
..+.++|.+.....+...+ - .+.. ....++++ +||||+|||+|++.+++..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~---------~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAG---------LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSC---------BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCC---------CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456889888666665544 2 2100 01246899 9999999999999998764
No 146
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.59 E-value=0.0052 Score=55.75 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
+|+|.|+||+|||++++.+++..+..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999998777666654
No 147
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.55 E-value=0.008 Score=56.16 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.|+|++|+|||++++.+++..+..++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5699999999999999999999888766654
No 148
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.53 E-value=0.013 Score=62.07 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+++.|+||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 45999999999999987776543
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.51 E-value=0.0082 Score=53.77 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=26.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|.|+||+|||++++.+++..+..++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4589999999999999999998887666543
No 150
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.46 E-value=0.0071 Score=55.35 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|+|.|+||+|||++++.+++..+..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 388999999999999999998877666554
No 151
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.46 E-value=0.0079 Score=53.25 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=22.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-+.|+||+|+|||++++.++......++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i 32 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYI 32 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEE
Confidence 37899999999999999999755443433
No 152
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.0073 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
.|.|.|+||+|||++++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3789999999999999999998776444
No 153
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0067 Score=53.47 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++...+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3488999999999999999998765
No 154
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.42 E-value=0.0044 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.|+|.|+||+|||++++.+++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998765
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.39 E-value=0.015 Score=56.48 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=35.1
Q ss_pred CcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 314 p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.++|.+.....+...+-.| ..++++||+|+|||+|++.+++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--------------~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--------------PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--------------SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred HhcCChHHHHHHHHHHHhcC--------------CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 45788888777766555332 3599999999999999999998765
No 156
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.38 E-value=0.0061 Score=55.58 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
..|+|.|+||+|||++++.+++..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 45999999999999999999988775444
No 157
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.34 E-value=0.008 Score=54.08 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++|+||||+|||++++.+++..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5589999999999999999998775
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.31 E-value=0.0077 Score=53.90 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-+.|+||+|+|||+|++.++...+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 378999999999999999999876
No 159
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.29 E-value=0.025 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcCc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
+++++||+|+|||.++..++...+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~ 134 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELST 134 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 3899999999999999888766543
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.23 E-value=0.007 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+.|+||+|+|||++++.++...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999876
No 161
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.21 E-value=0.014 Score=56.43 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=26.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.++|+||||+|||++++.+++..+..++..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 589999999999999999999988766654
No 162
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.18 E-value=0.011 Score=52.52 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.8
Q ss_pred ceecCCCCcchhHHHHHHHHhc---CceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS---NRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~---~~~~~~~ 378 (474)
|.|.|++|+|||++++.+++.+ +..++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999886 6555543
No 163
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.18 E-value=0.0088 Score=55.21 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=26.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.|.||||+|||++++.+++.++..++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 5699999999999999999998887666544
No 164
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.17 E-value=0.011 Score=52.26 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=23.7
Q ss_pred ceecCCCCcchhHHHHHHHHhc---CceEEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS---NRSVIT 377 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~---~~~~~~ 377 (474)
|.|.|+||+|||++++.+++.. +..++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 7899999999999999999866 555554
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.16 E-value=0.024 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++++||+|+|||++++.++...+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3499999999999999999997643
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.15 E-value=0.0081 Score=53.95 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..|+|.|+||+|||++++.+++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 34899999999999999999987654
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.15 E-value=0.0081 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+||+|+|||++++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999876
No 168
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.12 E-value=0.01 Score=53.12 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.|.|+|++|+|||++++.+++ .+..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 388999999999999999999 6655544
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.09 E-value=0.0076 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..+.|+||||+|||++++.+++..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45999999999999999999965544
No 170
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.02 E-value=0.011 Score=53.05 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.2
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.+.|+|++|+|||++++.++. .+..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 378999999999999999998 5655543
No 171
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.012 Score=55.13 Aligned_cols=29 Identities=48% Similarity=0.661 Sum_probs=24.1
Q ss_pred ccceecCCCCcchhHHHHHHHHh---cCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL---SNRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~---~~~~~~ 376 (474)
..|+|+|+||+|||++++.+++. .+..++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 34999999999999999999986 555444
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.97 E-value=0.0098 Score=53.75 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-+.|+||+|+|||++++.++...+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34889999999999999999988754
No 173
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.97 E-value=0.014 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.||.|+|||+|++.++...+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3488999999999999999999874
No 174
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.90 E-value=0.015 Score=51.98 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=24.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhc-CceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS-NRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~-~~~~~~ 377 (474)
..|.|.|+||+|||++++.+++.. +..++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 459999999999999999999987 344443
No 175
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.89 E-value=0.017 Score=56.15 Aligned_cols=31 Identities=35% Similarity=0.372 Sum_probs=26.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|+|+||+|+|||+|+..+|+..+..++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~ 71 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINS 71 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcc
Confidence 3589999999999999999999988766654
No 176
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.89 E-value=0.013 Score=52.31 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|.|.|++|+|||++++.+++. +..++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 45999999999999999999987 655554
No 177
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.81 E-value=0.012 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..+.|+||+|+|||+|++.+....+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999998764
No 178
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.80 E-value=0.012 Score=56.77 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.4
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..++|+||||||||+||.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 44799999999999999999875
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.80 E-value=0.017 Score=50.61 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~ 376 (474)
..+.|+|++|+|||++++.++... +.+++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 458899999999999999999875 54444
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.78 E-value=0.021 Score=52.29 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=17.1
Q ss_pred cceecCCCCcchhHHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~ 369 (474)
=++++||||+|||+++..++.
T Consensus 14 i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 378899999999997766654
No 181
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.74 E-value=0.015 Score=52.11 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.|.|.|++|+|||++++.+++..+.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 488999999999999999999877666653
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.72 E-value=0.013 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.2
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.|+||+|+|||+|++.++...+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 77899999999999999998875
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.68 E-value=0.015 Score=57.67 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
..++|+||||+|||+|++.++......+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 5699999999999999999998765433
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.68 E-value=0.015 Score=54.24 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.|.||+|+|||++++.+++.++...+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 4589999999999999999998777655543
No 185
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.61 E-value=0.019 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-+.|+||+|+|||+|++.+.+..+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 45889999999999999999988763
No 186
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.55 E-value=0.018 Score=51.38 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|.|+|++|+|||++++.+++..+.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3488999999999999999999877666653
No 187
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.50 E-value=0.015 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.||+|+|||+|++.++...+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999998765
No 188
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.48 E-value=0.015 Score=51.25 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++|+|+||+|||++++.++..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999997754
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.48 E-value=0.011 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..|.|.|+||+|||++++.+++.++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4599999999999999999998654
No 190
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.48 E-value=0.018 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999875
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.47 E-value=0.028 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++|+||||+|||+|++.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 55889999999999999999854
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.45 E-value=0.015 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..|.|.|+||+|||++++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999997643
No 193
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.43 E-value=0.014 Score=56.62 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.||+|+|||++++.++.+..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998864
No 194
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.41 E-value=0.03 Score=53.68 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.6
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
-++++||+|+|||+|+..+++..+..++..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 378999999999999999999888665543
No 195
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.38 E-value=0.03 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-+.|+||+|+|||+|++.++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 55899999999999999999974
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.33 E-value=0.02 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.8
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
..-+.|+||+|+|||+|++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3558899999999999999988
No 197
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.31 E-value=0.024 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++|.||||+|||+||..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5599999999999999999998765
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.30 E-value=0.021 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++...+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999998876
No 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.29 E-value=0.021 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++...+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998875
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.25 E-value=0.021 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=20.4
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.-++|+||||+|||+|++.++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5589999999999999999997
No 201
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.24 E-value=0.016 Score=50.56 Aligned_cols=19 Identities=47% Similarity=0.777 Sum_probs=16.9
Q ss_pred ccceecCCCCcchhHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKF 366 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ 366 (474)
.-+.|+||+|+|||+|++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4488999999999999994
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.23 E-value=0.021 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+|+||+|||++++.+++..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999999999999876
No 203
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.21 E-value=0.026 Score=51.13 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=24.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..|.|.|++|+|||++++.+++ .+..++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4589999999999999999998 66655543
No 204
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.16 E-value=0.04 Score=53.41 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=33.8
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHHhcCc
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.+.++|.+.....+.. + .. ..++++||+|+|||+|++.+++....
T Consensus 12 ~~~~~gR~~el~~L~~-l-~~--------------~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-L-RA--------------PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp GGGSCCCHHHHHHHHH-T-CS--------------SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred HHHhcChHHHHHHHHH-h-cC--------------CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3457888877776665 3 21 25999999999999999999876543
No 205
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.12 E-value=0.032 Score=53.68 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=24.7
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-+++.||+|+|||+|+..+++..+..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 37899999999999999999988765544
No 206
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.06 E-value=0.032 Score=50.47 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=26.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.|.|++|+|||++++.+++..+.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4589999999999999999999888766654
No 207
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.99 E-value=0.019 Score=51.71 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.||+|+|||+|++.++...+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999999865
No 208
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.97 E-value=0.023 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred ccccceecCCCCcchhHHHHHHHH
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...+|+++|++|+|||+|+.++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999874
No 209
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.94 E-value=0.031 Score=52.02 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCce
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~ 374 (474)
..|.|.|+||+|||++++.+++.++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 459999999999999999999977654
No 210
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.92 E-value=0.054 Score=53.92 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=24.9
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-+++.||+|+|||+|+..+++..+..++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 37899999999999999999988765554
No 211
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.89 E-value=0.026 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.5
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++|+||||+|||+|++.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~ 43 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLL 43 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999873
No 212
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.86 E-value=0.027 Score=51.83 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=26.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
..+.|.|++|+|||++++.+++.++..++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 5689999999999999999998777666554
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.81 E-value=0.02 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++|.|+||+|||++++.+++..+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999998765
No 214
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.80 E-value=0.024 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.9
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
-|+|.|+||+|||++++.+++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999854
No 215
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.78 E-value=0.039 Score=53.73 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
-|++.||+|+|||+|++.+++..+..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 488999999999999999999888555443
No 216
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.71 E-value=0.021 Score=55.88 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=23.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~ 375 (474)
.+++|+|+||+|||++++.+++..+..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4699999999999999999998765443
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.69 E-value=0.034 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.2
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
-+.|+||+|+|||+|++.++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999999999999999987
No 218
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.65 E-value=0.032 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999864
No 219
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.60 E-value=0.028 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=22.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+.|+||+|+|||+|++.|+.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 458999999999999999999886
No 220
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.55 E-value=0.031 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=19.2
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..-+++.||||+|||+|+..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999877653
No 221
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.46 E-value=0.033 Score=54.93 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=22.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++++||+|+|||+|+++++...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5599999999999999999998765
No 222
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.44 E-value=0.034 Score=49.49 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=20.7
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+.|+||+|+|||++++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999765
No 223
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.43 E-value=0.028 Score=49.95 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCCceeccccceecCCCCcchhHHHHHHHHh
Q 011953 340 SGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 340 ~~~~~r~~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.|+.......|+++|++|+|||+|+.++...
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3444455688999999999999999998854
No 224
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.42 E-value=0.057 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..-+.|+||||+|||+|++.++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999775
No 225
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.40 E-value=0.025 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=15.5
Q ss_pred ccceecCCCCcchhHHHHHHH-HhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAA-KLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia-~~~~ 372 (474)
.-+.|+||+|+|||++++.++ ...+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 458899999999999999999 8764
No 226
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.32 E-value=0.03 Score=56.36 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=24.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~ 376 (474)
.-|+|+|+||+|||++++.+++..+..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 45889999999999999999987765443
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.29 E-value=0.035 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++++||+|+|||++++.++...
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 449999999999999999999764
No 228
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.23 E-value=0.019 Score=57.85 Aligned_cols=85 Identities=15% Similarity=0.010 Sum_probs=44.5
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEeCCCcccCCceEEEE-----e-eCCeeeeeccccccC------CceEEEEc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV-----K-DGGEWMLEAGALVLA------DGGLCCID 416 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~~~~~~~~~l~~~~~-----~-~~~~~~~~~g~l~~a------~~gil~iD 416 (474)
-.++.|+||||||+++..++.. ....+.+........+..... . ......--...+... ...+++||
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~-~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiD 241 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF-EEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFID 241 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT-TTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHhcc-CCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEEEe
Confidence 3689999999999999887754 222333322221111100000 0 000000001112211 24699999
Q ss_pred CCCCCChHhHHHHHHHHH
Q 011953 417 EFDSMREHDRATIHEAME 434 (474)
Q Consensus 417 Eid~~~~~~~~~l~~~me 434 (474)
|+..++......+..+..
T Consensus 242 E~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 242 EGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp TGGGSCHHHHHHHHHHTT
T ss_pred CcccCCHHHHHHHHHhCC
Confidence 999998877666666554
No 229
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.08 E-value=0.034 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.++.|+||+|+|||+|++.++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999764
No 230
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.05 E-value=0.033 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999997754
No 231
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.05 E-value=0.035 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.3
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..-+.|+||+|+|||+|++.++.+.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999997653
No 232
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.02 E-value=0.041 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+|+||.|+|||+|+++|+.+++
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 67999999999999999997654
No 233
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.01 E-value=0.023 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
|.+.|++|+|||++++.+++..+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 234
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.01 E-value=0.041 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 67999999999999999998853
No 235
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.00 E-value=0.041 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|+||+|||+|+.++..-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999988753
No 236
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.98 E-value=0.041 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999988753
No 237
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.98 E-value=0.041 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+.|+|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 569999999999999999998753
No 238
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.97 E-value=0.04 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.7
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|+||+|||+|+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999864
No 239
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.95 E-value=0.034 Score=48.68 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..++++|+||+|||+|++.+...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998763
No 240
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.93 E-value=0.056 Score=57.67 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHH-HHHHHH
Q 011953 320 FTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQF-LKFAAK 369 (474)
Q Consensus 320 ~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~l-a~~ia~ 369 (474)
+.=++|+..+|... --.|+.||||||||+. +..|+.
T Consensus 192 ~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHHHHH
Confidence 33466777666432 1278999999999974 444443
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.89 E-value=0.043 Score=50.38 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.|.|+||+|||++++.+++..+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 242
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.86 E-value=0.045 Score=50.64 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.4
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhcC
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.. .-+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344 5588999999999999999998754
No 243
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.85 E-value=0.045 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.++++|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998854
No 244
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.85 E-value=0.045 Score=49.19 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.9
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+++++|++|+|||+|+.++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998653
No 245
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.82 E-value=0.045 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999998853
No 246
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.82 E-value=0.045 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999988753
No 247
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.81 E-value=0.052 Score=49.85 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.8
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
..-+++.|+||+|||+++..++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999987765
No 248
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.80 E-value=0.044 Score=47.01 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=19.9
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|+||+|||+|++++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5699999999999999998874
No 249
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.80 E-value=0.048 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..++|+|++|+|||+|++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999853
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.79 E-value=0.044 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||.|+|||+|++.++.+.+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999997753
No 251
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.78 E-value=0.25 Score=45.15 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.3
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+|+|++|+|||+|+.++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 367999999999999999998854
No 252
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.78 E-value=0.047 Score=46.59 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 367999999999999999998854
No 253
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.76 E-value=0.046 Score=47.98 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=22.8
Q ss_pred eeccccceecCCCCcchhHHHHHHHHh
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+...+|+++|++|+|||+|+..+..-
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 344578999999999999999998753
No 254
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.76 E-value=0.049 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999998754
No 255
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.73 E-value=0.069 Score=55.15 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.+++++||+|+|||++++++..+.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 55999999999999999999988753
No 256
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.72 E-value=0.045 Score=50.63 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-+-|.||+|+|||++++.++...+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34889999999999999999987653
No 257
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.72 E-value=0.041 Score=50.53 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=25.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
.+-|.|+||+|||++++.+++..+...+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999998887766654
No 258
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.047 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.+|+++|++|+|||+|+.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5699999999999999999885
No 259
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.66 E-value=0.049 Score=46.38 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67999999999999999998754
No 260
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.66 E-value=0.044 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+.|+|++|+|||+|++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 569999999999999999998754
No 261
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.65 E-value=0.051 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+.++..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999875
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.65 E-value=0.046 Score=48.88 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|.|++|+|||++++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 448899999999999999999764
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.63 E-value=0.048 Score=51.01 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=22.7
Q ss_pred ccccceecCCCCcchhHHHHHHHHhcC
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
...-+.|+||+|+|||+|++.++.+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 335588999999999999999997654
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.62 E-value=0.17 Score=48.56 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..-++++|++|+|||+++..++...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3568999999999999999998654
No 265
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.62 E-value=0.053 Score=51.44 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=23.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
..|.|.|+||+|||++++.+++ .+..++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~-lg~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN-LGAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH-HTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEe
Confidence 4599999999999999999995 4555544
No 266
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.57 E-value=0.045 Score=47.77 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999998853
No 267
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.57 E-value=0.048 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+.|+|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999853
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.56 E-value=0.037 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999998754
No 269
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.55 E-value=0.046 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999754
No 270
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.52 E-value=0.056 Score=47.34 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
...|+++|++|+|||+|++++.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 36799999999999999998886543
No 271
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.52 E-value=0.051 Score=53.36 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=24.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc----CceEEEeC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS----NRSVITTG 379 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~----~~~~~~~~ 379 (474)
.-++|+||||+|||+|+..++... +..+|...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 568999999999999999998653 23445543
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.52 E-value=0.047 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.4
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..-+.|+||+|+|||+|++.++.+.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999997754
No 273
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.52 E-value=0.052 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.+|+++|++|+|||+|++++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5699999999999999999885
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.51 E-value=0.045 Score=50.71 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.4
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..-+.|+||+|+|||+|++.++.+.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35589999999999999999997753
No 275
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.49 E-value=0.048 Score=50.79 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=22.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
...+.|+||+|+|||+|++.++.+.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998754
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.48 E-value=0.049 Score=50.02 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhcC
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..-+.|+||.|+|||+|++.++.+.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35588999999999999999998754
No 277
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.46 E-value=0.046 Score=46.52 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.0
Q ss_pred ccceecCCCCcchhHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia 368 (474)
..|+++|+||+|||+|++++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 469999999999999999885
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.46 E-value=0.047 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4488999999999999999997754
No 279
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.45 E-value=0.054 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+.++..-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 67999999999999999998743
No 280
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.44 E-value=0.047 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+.|+|+||+|||+|+.++...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 55999999999999999999864
No 281
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.43 E-value=0.055 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.6
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
+|+++|++|+|||+|+..+..-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998753
No 282
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.42 E-value=0.065 Score=47.76 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=18.6
Q ss_pred ceecCCCCcchh-HHHHHHHHh
Q 011953 350 LLLVGDPGTGKS-QFLKFAAKL 370 (474)
Q Consensus 350 iLL~G~pGtGKs-~la~~ia~~ 370 (474)
.+++||.|+||| .|++++.+.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 788999999999 899998864
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.058 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.8
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...|+++|++|+|||+|+.++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998654
No 284
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.41 E-value=0.054 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.||+|+|||+|++.|+.+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 4588999999999999999998753
No 285
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.37 E-value=0.05 Score=46.33 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.5
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56999999999999999998753
No 286
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.29 E-value=0.38 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+|+|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 477999999999999999988754
No 287
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.26 E-value=0.058 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..-++++||||+|||+|+..++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 356999999999999999998864
No 288
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.25 E-value=0.073 Score=47.75 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=26.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
-|.|.|++|+|||++++.+|+.++.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999988774
No 289
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.24 E-value=0.053 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4588999999999999999997754
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.24 E-value=0.053 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999997653
No 291
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.23 E-value=0.076 Score=55.72 Aligned_cols=87 Identities=25% Similarity=0.227 Sum_probs=45.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEeCCCccc-C------CceEEEEeeCCee---eeeccccccCCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-A------GLTVTAVKDGGEW---MLEAGALVLADGGLCC 414 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~~~~~~~-~------~l~~~~~~~~~~~---~~~~g~l~~a~~gil~ 414 (474)
..+++.|+||||||+++.++...+ +..+........+ . +..+.-...--.+ .+....-......+++
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999988653 2333322111110 0 0111100000000 0000000112346999
Q ss_pred EcCCCCCChHhHHHHHHHHH
Q 011953 415 IDEFDSMREHDRATIHEAME 434 (474)
Q Consensus 415 iDEid~~~~~~~~~l~~~me 434 (474)
|||+..++......|..++.
T Consensus 285 IDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 285 VDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp ECCGGGCCHHHHHHHHTTSC
T ss_pred EcCccCCCHHHHHHHHHhCc
Confidence 99999998876666665543
No 292
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.22 E-value=0.058 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+.++..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999985
No 293
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.21 E-value=0.062 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.7
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+.++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999875
No 294
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.21 E-value=0.38 Score=48.39 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.1
Q ss_pred ccceecCCCCcchhHHH
Q 011953 348 SHLLLVGDPGTGKSQFL 364 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la 364 (474)
.++|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 56999999999999964
No 295
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.21 E-value=0.056 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++|+||||+|||+|+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 55899999999999999998853
No 296
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.18 E-value=0.066 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..+.|+||+|+|||+|++.++.+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999988654
No 297
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.12 E-value=0.054 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..-+.|+||+|+|||+|++.++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999999764
No 298
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.11 E-value=0.058 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+||.|++|+|||++|..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67999999999999999988863
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.10 E-value=0.15 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.4
Q ss_pred ccccceecCCCCcchhHHHHHHHHhc
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...-+.|+||+|+|||++++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999764
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.10 E-value=0.06 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++|.||||+|||+|++.++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 44889999999999999999865
No 301
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.08 E-value=0.066 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++++||||+|||+|+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998864
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.06 E-value=0.055 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999997753
No 303
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.06 E-value=0.073 Score=51.75 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=22.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..++++||+|+|||+|+++++...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4699999999999999999998865
No 304
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.04 E-value=0.057 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4488999999999999999998754
No 305
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.01 E-value=0.067 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+..+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999977664
No 306
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.01 E-value=0.059 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999997754
No 307
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.01 E-value=0.065 Score=46.06 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999998854
No 308
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.01 E-value=0.054 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=21.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3488999999999999999997653
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.00 E-value=0.055 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4589999999999999999997753
No 310
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.00 E-value=0.065 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++..-
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998753
No 311
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.99 E-value=0.065 Score=46.24 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.3
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 477999999999999999998753
No 312
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.97 E-value=0.067 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999853
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.95 E-value=0.06 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999998754
No 314
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.91 E-value=0.11 Score=54.43 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=34.8
Q ss_pred cCcccchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHH
Q 011953 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 313 ~p~i~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.+.++|.+.....+...+.... .+ ..-++++|++|+|||+||+.+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~-----~~-----~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK-----GE-----PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST-----TS-----CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhccc-----CC-----CceEEEEcCCCCCHHHHHHHHHh
Confidence 3468899888888877775420 01 13489999999999999998863
No 315
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.90 E-value=0.062 Score=46.28 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.2
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+.++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998763
No 316
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.89 E-value=0.069 Score=46.12 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 367999999999999999998753
No 317
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.88 E-value=0.068 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.2
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 367999999999999999998863
No 318
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.88 E-value=0.068 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.3
Q ss_pred ccccceecCCCCcchhHHHHHHHHh
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...-++++|+||+|||+|+..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998854
No 319
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.87 E-value=0.082 Score=46.24 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998754
No 320
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.87 E-value=0.069 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.7
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+..+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 47799999999999999999875
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.87 E-value=0.068 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+||+|+|||++++.++...
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999764
No 322
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.86 E-value=0.061 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||.|+|||+|++.++.+.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999997754
No 323
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.82 E-value=0.065 Score=51.55 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=23.9
Q ss_pred eccccceecCCCCcchhHHHHHHHHh------cCceEEEeCCC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKL------SNRSVITTGLG 381 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~------~~~~~~~~~~~ 381 (474)
+| + ++++||||+|||+|+-.++.. -...+|.....
T Consensus 28 ~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 28 SG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 45 4 899999999999996655432 23456665443
No 324
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.80 E-value=0.061 Score=50.56 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||.|+|||+|++.++.+.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999997653
No 325
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.79 E-value=0.075 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.5
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..-+.|+||+|+|||+|++.++.+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999986
No 326
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.74 E-value=0.075 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4488999999999999999997754
No 327
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.73 E-value=0.072 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.284 Sum_probs=20.0
Q ss_pred eccccceecCCCCcchhHHHHHHH
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia 368 (474)
....-++|+||||+|||+|++.++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 334569999999999999999765
No 328
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.73 E-value=0.072 Score=47.45 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=20.8
Q ss_pred eccccceecCCCCcchhHHHHHHHH
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
+....|+++|++|+|||+|+.++..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3347799999999999999999874
No 329
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.72 E-value=0.32 Score=43.18 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
-.+++|||+..++++....+..+.+.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999987665555444443
No 330
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.70 E-value=0.066 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.5
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 36799999999999999998874
No 331
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.69 E-value=0.068 Score=46.53 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+..+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47799999999999999998874
No 332
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.68 E-value=0.068 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998864
No 333
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.67 E-value=0.063 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|++|+|||+|+.++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6799999999999999999874
No 334
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.63 E-value=0.072 Score=46.20 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998853
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.62 E-value=0.066 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.||+|+|||+|++.++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999998754
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.58 E-value=0.075 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.9
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67999999999999999999854
No 337
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.58 E-value=0.07 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4488999999999999999997753
No 338
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.58 E-value=0.076 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.+|+++|++|+|||+|+..+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6799999999999999998875
No 339
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.58 E-value=0.078 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.9
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+..-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 367999999999999999888753
No 340
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.58 E-value=0.077 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.9
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++++||||+|||+|+..++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 55899999999999999888743
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.57 E-value=0.079 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4478999999999999999997754
No 342
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.57 E-value=0.077 Score=46.65 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 477999999999999999998864
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.55 E-value=0.079 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4478999999999999999997754
No 344
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.54 E-value=0.073 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.+.|++|+|||+|++.+++..+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4488999999999999999998764
No 345
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.081 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.2
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998854
No 346
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.54 E-value=0.071 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+..+..-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998863
No 347
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.54 E-value=0.071 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|+||+|||+|++++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999885
No 348
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.53 E-value=0.078 Score=62.83 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=23.8
Q ss_pred eeccccceecCCCCcchhHHHHHHHHhc
Q 011953 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+....+++|+||||||||+||.+++..+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556889999999999999999887553
No 349
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.52 E-value=0.079 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4478999999999999999997753
No 350
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.49 E-value=0.079 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 367999999999999999998853
No 351
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.49 E-value=0.081 Score=52.27 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4478999999999999999997754
No 352
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.076 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+.++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 36799999999999999999875
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.49 E-value=0.052 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.9
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.++|++|+|||+|++.++....
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998754
No 354
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.46 E-value=0.085 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+..-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999988754
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.44 E-value=0.084 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.1
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-+.|+||+|+|||+|++.++.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999987
No 356
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.44 E-value=0.081 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 367999999999999999998754
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.41 E-value=0.085 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4488999999999999999997754
No 358
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.40 E-value=0.11 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+|+||+|||+|++.++...
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999998653
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.37 E-value=0.075 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999998753
No 360
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.37 E-value=0.068 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
+|+++|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999988753
No 361
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.32 E-value=0.084 Score=46.17 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67999999999999999998754
No 362
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.28 E-value=0.072 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998753
No 363
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.26 E-value=0.088 Score=46.57 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 477999999999999999998754
No 364
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.22 E-value=0.2 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.7
Q ss_pred eccccceecCCCCcchhHHHHHHHHhc
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
....-++|+|++|+|||++++.|+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 334568999999999999999999764
No 365
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.22 E-value=0.09 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999988754
No 366
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.19 E-value=0.086 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.8
Q ss_pred eccccceecCCCCcchhHHHHHHHH
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.....|+++|++|+|||+|+..+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3347899999999999999998874
No 367
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.17 E-value=0.2 Score=49.11 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.5
Q ss_pred ccccceecCCCCcchhHHHHHHHHhc
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
...-++|+||+|+|||++++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34569999999999999999999764
No 368
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.16 E-value=0.086 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.++++||+|+|||++++++....+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 389999999999999999998754
No 369
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.16 E-value=0.053 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.5
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
...|+++|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999998775
No 370
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.13 E-value=0.09 Score=46.07 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=21.2
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 367999999999999999998853
No 371
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.11 E-value=0.11 Score=54.13 Aligned_cols=44 Identities=23% Similarity=0.069 Sum_probs=33.6
Q ss_pred cchHHHHHHHHhhhhCCceeecCCCCceeccccceecCCCCcchhHHHHHHHH
Q 011953 317 FGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 317 ~G~~~~K~ai~~~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
+|.+..+..|...|..+. +. ...-|.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~---~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DL---DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TS---SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CC---CceEEEEEcCCCCCHHHHHHHHHH
Confidence 699998888887775421 00 114488999999999999999995
No 372
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.11 E-value=0.078 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|++|+|||+|+.++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999999884
No 373
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.09 E-value=0.077 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.4
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|++++...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 66999999999999999988754
No 374
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.03 E-value=0.094 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+||+|+|||++++.++...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999764
No 375
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.03 E-value=0.089 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|+++|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999988753
No 376
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.02 E-value=0.49 Score=43.71 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.6
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+|+|+||+|||+|+..+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999998874
No 377
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.087 Score=46.32 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.2
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999998754
No 378
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.97 E-value=0.062 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+.|+||+|+|||+|+++|+.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 57889999999999999997754
No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.96 E-value=0.096 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999998854
No 380
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.93 E-value=0.097 Score=46.80 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.7
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+..-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999998754
No 381
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.90 E-value=0.075 Score=51.07 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=23.5
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
+...-+.|+||+|+|||+|++.++.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3345689999999999999999998754
No 382
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.84 E-value=0.081 Score=46.65 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999998853
No 383
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.82 E-value=0.074 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+.|+||+|+|||+|++.++.+.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999875
No 384
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.81 E-value=0.091 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.4
Q ss_pred ccccceecCCCCcchhHHHHHHHHhc
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
....|+++|++|+|||+|+..+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34789999999999999999988654
No 385
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.80 E-value=0.091 Score=46.68 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999998753
No 386
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.75 E-value=0.093 Score=61.35 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=21.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+|++||||||||+||++++...
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHh
Confidence 559999999999999999998654
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.68 E-value=0.075 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=21.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3478999999999999999997653
No 388
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.65 E-value=0.11 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.6
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.+.|++|+|||+++..++..+
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999988654
No 389
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.65 E-value=0.08 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998854
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.64 E-value=0.11 Score=44.17 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.3
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+++||.|+|||+++.+|.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998543
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.63 E-value=0.056 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+.|+|++|+|||+|++.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999988754
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.61 E-value=0.12 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.0
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
-+.+.|++|+|||+|++.+....
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 37899999999999999988653
No 393
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.58 E-value=0.12 Score=50.75 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.1
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++++|+||+|||+||..++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999888754
No 394
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.55 E-value=0.085 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||.|+|||+|++.++.+.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4588999999999999999998754
No 395
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.54 E-value=0.12 Score=45.44 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.0
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
+|++|++|+|||++|+.++......+|.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yi 29 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYI 29 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEE
Confidence 6899999999999999998662233444
No 396
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.54 E-value=0.081 Score=55.13 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..+.|+|++|+|||+|++.++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 5689999999999999999998764
No 397
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.53 E-value=0.087 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
++.|+||+|+|||+|++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999875
No 398
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.53 E-value=0.11 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.8
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+|+|+||+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999998874
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.48 E-value=0.088 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|++.|+.+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4588999999999999999997653
No 400
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.46 E-value=0.1 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67999999999999999988753
No 401
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.44 E-value=0.14 Score=54.06 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhc---CceEEEe
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITT 378 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~---~~~~~~~ 378 (474)
..|+|+|.||+|||++++.+++.+ +..++.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 459999999999999999999887 6555554
No 402
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.42 E-value=0.1 Score=46.65 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.9
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999999864
No 403
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.42 E-value=0.1 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=20.3
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+.++..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998864
No 404
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.38 E-value=0.087 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
...|+++|+||+|||+|++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999875
No 405
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.37 E-value=0.071 Score=46.25 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=10.3
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|++|+|||+|+..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6799999999999999998864
No 406
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=90.33 E-value=0.89 Score=47.58 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.2
Q ss_pred ccceecCCCCcchhHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia 368 (474)
.++|+.+|+|+|||..+-.++
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~ 219 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQIS 219 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHH
Confidence 458999999999999765554
No 407
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.31 E-value=0.11 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|++++..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999997765
No 408
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.26 E-value=0.11 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999765
No 409
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.23 E-value=0.12 Score=46.35 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 367999999999999999988753
No 410
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.22 E-value=0.14 Score=46.65 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=26.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCceEEE
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~~~~~ 377 (474)
.-|.+.|++|+|||++++.+|+.++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 458999999999999999999988887764
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.17 E-value=0.11 Score=46.16 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+|+++|++|+|||+|+.++..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 36799999999999999998874
No 412
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.14 E-value=0.13 Score=46.34 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.3
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+..-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999988753
No 413
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.13 E-value=0.12 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..|+|+|.||+|||++++.+++..+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5699999999999999999997643
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.12 E-value=0.12 Score=45.48 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.3
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+..+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998764
No 415
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.09 E-value=0.13 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+..-
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999988753
No 416
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=90.09 E-value=0.27 Score=47.71 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=48.3
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC----ceEEEeCCCcccCCceEEEEeeCCeeeeecccc-ccCCceEEEEcCCCC-C
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDS-M 421 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEid~-~ 421 (474)
...||+||+|+||++.++.+++... ........... . +........... ..++.-|++|||.+. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~--------~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-T--------DWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-C--------CHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-C--------CHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 4589999999999999999987532 11111100000 0 000000001111 124567999999999 9
Q ss_pred ChHhHHHHHHHHHh
Q 011953 422 REHDRATIHEAMEQ 435 (474)
Q Consensus 422 ~~~~~~~l~~~me~ 435 (474)
+.+.+++|...+++
T Consensus 90 ~~~~~~aLl~~le~ 103 (343)
T 1jr3_D 90 NAAINEQLLTLTGL 103 (343)
T ss_dssp CTTHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHhc
Confidence 98899999999985
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.07 E-value=0.29 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceecCCCCcchhHHHHHHHHhc
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~ 371 (474)
++|+|+.|+|||++++.+....
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7889999999999999999764
No 418
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.04 E-value=0.094 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+|+||+|+|||+|++.++..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998753
No 419
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.04 E-value=0.12 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+..+..-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 420
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.01 E-value=0.13 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.584 Sum_probs=21.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|.|+.|+|||++++.++...+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccC
Confidence 4588999999999999999998843
No 421
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.01 E-value=0.12 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.4
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+..-
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998854
No 422
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.92 E-value=0.11 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.4
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|.|+|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999998754
No 423
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.92 E-value=0.11 Score=46.53 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|++|+|||+|+..+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6799999999999999998874
No 424
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.91 E-value=0.095 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 477999999999999999988743
No 425
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.87 E-value=0.096 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.5
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|++|+|||+|++++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998863
No 426
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.86 E-value=0.12 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.2
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+..-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998864
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.82 E-value=0.075 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=18.4
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-|.|.|++|+|||++++.+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998655
No 428
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=89.81 E-value=0.16 Score=39.83 Aligned_cols=30 Identities=37% Similarity=0.904 Sum_probs=21.4
Q ss_pred EEEEEecCCCCccccccccccCccccCCCCCCCCCCCCCCCCc
Q 011953 146 ERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTN 188 (474)
Q Consensus 146 ~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~ 188 (474)
..-|+|.+||..| ......|..||. |++.+
T Consensus 65 v~p~~C~~CG~~F--------~~~~~kPsrCP~-----CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVF--------KAEINIPSRCPK-----CKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBC--------CCCSSCCSSCSS-----SCCCC
T ss_pred EECcChhhCcCee--------cccCCCCCCCcC-----CCCCc
Confidence 3458899999875 124567899997 77753
No 429
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.77 E-value=0.22 Score=52.76 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=16.9
Q ss_pred cceecCCCCcchhHHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~ 369 (474)
..++.||||||||+++..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 378999999999997665543
No 430
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.76 E-value=0.13 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 367999999999999999998753
No 431
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.73 E-value=0.14 Score=46.40 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.5
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+|+|++|+|||+|+..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 5699999999999999988764
No 432
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.68 E-value=0.13 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.9
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+..+..-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 367999999999999999888753
No 433
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.64 E-value=0.12 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+||+|+|||+|+|.++.+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 348999999999999999999875
No 434
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.63 E-value=0.14 Score=52.69 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=23.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
..|.|+|.+|+|||++++++++.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 435
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.62 E-value=0.15 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+-|+||+|+|||+|++.++.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4488999999999999999997754
No 436
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.62 E-value=0.084 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred cccceecCCCCcchhHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia 368 (474)
..+|+++|++|+|||+|+.++.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999874
No 437
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.47 E-value=0.2 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.+.|.+|+|||++++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999998874
No 438
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.46 E-value=0.15 Score=46.04 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.7
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+|+|+||+|||+|+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999998873
No 439
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.46 E-value=0.15 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.0
Q ss_pred ccccceecCCCCcchhHHHHHHHHh
Q 011953 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 346 ~~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+.|++++|++|+|||++++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998854
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.45 E-value=0.13 Score=49.16 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.9
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++++|++|+|||+++..++...
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998653
No 441
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.43 E-value=0.22 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=20.8
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.+.|+||+|+|||+|+++++.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999754
No 442
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.42 E-value=0.52 Score=42.59 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=43.5
Q ss_pred ceecCCCCcchhH-HHHHHHHhc--CceEEEeC-CCc---------ccCCceEEEEeeCCeeeeecccc---ccCCceEE
Q 011953 350 LLLVGDPGTGKSQ-FLKFAAKLS--NRSVITTG-LGS---------TSAGLTVTAVKDGGEWMLEAGAL---VLADGGLC 413 (474)
Q Consensus 350 iLL~G~pGtGKs~-la~~ia~~~--~~~~~~~~-~~~---------~~~~l~~~~~~~~~~~~~~~g~l---~~a~~gil 413 (474)
.+++||-|+|||+ |++.+.+.. +..+.... ... +..|+...+..- .....+ ...+.-++
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v-----~~~~di~~~i~~~~dvV 105 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINI-----SKASEIMTHDLTNVDVI 105 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEE-----SSGGGGGGSCCTTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEe-----CCHHHHHHHHhcCCCEE
Confidence 4679999999999 777766543 22222211 111 111222111110 001111 12244699
Q ss_pred EEcCCCCCChHhHHHHHHHHHhc
Q 011953 414 CIDEFDSMREHDRATIHEAMEQQ 436 (474)
Q Consensus 414 ~iDEid~~~~~~~~~l~~~me~~ 436 (474)
+|||+.-++++.-..+.++.+.+
T Consensus 106 ~IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 106 GIDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp EECCGGGSCTHHHHHHHHHHHTT
T ss_pred EEechhcCCHHHHHHHHHHHHCC
Confidence 99999999987666666665543
No 443
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.39 E-value=0.2 Score=48.26 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.3
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.=+++.|+||+|||+|+..++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4499999999999999988874
No 444
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.39 E-value=0.16 Score=45.92 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|+++|++|+|||+|+.++...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 67999999999999999998854
No 445
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.35 E-value=0.15 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.0
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+|+|+||+|||+|+.++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 5699999999999999999874
No 446
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.32 E-value=0.25 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-+.|+||+|+|||+|++.|+.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34889999999999999999998754
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.26 E-value=0.12 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.6
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.|.|++|+|||++++.+++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5689999999999999999998874
No 448
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.24 E-value=0.65 Score=46.84 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.7
Q ss_pred cccceecCCCCcchhHHH
Q 011953 347 ESHLLLVGDPGTGKSQFL 364 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la 364 (474)
..++|+.||+|+|||..+
T Consensus 8 g~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp TCEEEECCCTTSSTTTTH
T ss_pred CCCEEEEcCCCCCHHHHH
Confidence 467999999999999963
No 449
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.16 E-value=0.23 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-+.|+||+|+|||+|++.|+.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34889999999999999999998754
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.03 E-value=0.15 Score=46.92 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-|.+.|++|+|||++++.+++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998764
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.96 E-value=0.13 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-+.|+||+|+|||+|+++++.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 378999999999999999997654
No 452
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.93 E-value=0.19 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.6
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..-++|.||||+|||+|++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998653
No 453
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.85 E-value=0.14 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..|.|+|++|+|||+|++.++...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 457999999999999999998653
No 454
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.83 E-value=0.16 Score=45.80 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++++|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458999999999999999888653
No 455
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.83 E-value=0.091 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=5.9
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+|+++|++|+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999988754
No 456
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.81 E-value=0.24 Score=54.10 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=16.9
Q ss_pred cceecCCCCcchhHHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~ 369 (474)
..++.||||||||+++..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~ 393 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVY 393 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999987665553
No 457
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.77 E-value=0.17 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.764 Sum_probs=19.8
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+++|++|+|||+|+.++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999998864
No 458
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.74 E-value=0.18 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.4
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-|.|.|++|+|||++++.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999999987653
No 459
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.71 E-value=0.17 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-+.|+||||+|||+|++.++....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 388999999999999999997554
No 460
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.66 E-value=0.17 Score=45.45 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.7
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++++|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 459999999999999999888653
No 461
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.57 E-value=0.18 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..|.|+|+||+|||+|+.++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45999999999999999999853
No 462
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.55 E-value=0.19 Score=49.46 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-++++|+||+|||+|+..++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 45888999999999999888754
No 463
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.43 E-value=0.18 Score=48.24 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.6
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..|+|+|+||+|||+|+..+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999998764
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.30 E-value=0.18 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.2
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-|.+.|++|+|||++++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999765
No 465
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.23 E-value=0.23 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++++||||+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 459999999999999999998753
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.07 E-value=0.2 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.1
Q ss_pred cceecCCCCcchhHHHHHHHHhcC
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
-+.|+||+|+|||+|++++. ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 37889999999999999999 653
No 467
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.93 E-value=0.95 Score=40.79 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
-.+++|||+.-++++....+..+.+.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhC
Confidence 46999999999987665555443333
No 468
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=87.81 E-value=0.68 Score=37.59 Aligned_cols=44 Identities=18% Similarity=0.496 Sum_probs=29.0
Q ss_pred cceeEEEEEEEEEecCCCCccccccccccCccccCCC-CCCCCCCCCCCCCceEEeecc
Q 011953 138 GATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPS-HCPSQRSKPCEGTNFQFVENS 195 (474)
Q Consensus 138 s~v~~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~-~Cp~~~~~~C~~~~~~~~~~~ 195 (474)
+..........|.|..||+.+... ..+. .||. |++....+..+.
T Consensus 63 a~L~i~~~p~~~~C~~CG~~~e~~---------~~~~~~CP~-----Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 63 AILDIVDEKVELECKDCSHVFKPN---------ALDYGVCEK-----CHSKNVIITQGN 107 (119)
T ss_dssp CCEEEEEECCEEECSSSSCEECSC---------CSTTCCCSS-----SSSCCCEEEESS
T ss_pred cEEEEEeccceEEcCCCCCEEeCC---------CCCCCcCcc-----ccCCCcEEecCC
Confidence 344444556689999999876431 1256 7986 998766655554
No 469
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.78 E-value=0.3 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.8
Q ss_pred ccceecCCCCcchhHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia 368 (474)
..+++.||+|+|||+++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 569999999999998655443
No 470
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=87.77 E-value=0.18 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.2
Q ss_pred ccceecCCCCcchhHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia 368 (474)
.+|+++|+||+|||+|+.++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 679999999999999998865
No 471
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.75 E-value=1.2 Score=37.26 Aligned_cols=57 Identities=18% Similarity=0.458 Sum_probs=32.9
Q ss_pred ceeEEEEEEEEEecCCCCcccccc---cccc----Ccccc-----CCCCCCCCCCCCCCCCceEEeecceeEee
Q 011953 139 ATKMYEGERTYMCRKCKHMFPVYP---ELET----RNSIV-----LPSHCPSQRSKPCEGTNFQFVENSIICHD 200 (474)
Q Consensus 139 ~v~~~~~~~~f~C~~C~~~~~~~~---~~~~----~~~~~-----~p~~Cp~~~~~~C~~~~~~~~~~~s~~~d 200 (474)
........+.+.|..||+.+.... .+.. ...+. .+..||. |++..+.+..++-.++.
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~-----Cgs~~~~i~~G~el~I~ 129 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPK-----CGSHDFEVVKGRGVYVA 129 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSS-----SSCCCEEEEESSCEEEE
T ss_pred EEEEEecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCcc-----ccCCccEEecCCeEEEE
Confidence 334445566899999999865422 0000 00111 1678986 99987777766544433
No 472
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=87.59 E-value=0.1 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.0
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+..+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 46799999999999999987763
No 473
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.68 E-value=0.29 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=19.9
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-+++.|+||+|||+|+..++..
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 474
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=87.65 E-value=0.34 Score=43.72 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.4
Q ss_pred ceecCCCCcchhHHHHHHHHhcCceEEEe
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~~~~~~~ 378 (474)
|-|+|..|+|||++++.+++ .+.+++..
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 77999999999999999998 77777654
No 475
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.54 E-value=0.2 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.5
Q ss_pred cceecCCCCcchhHHHHHHHHh
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999998754
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.53 E-value=0.24 Score=44.38 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.8
Q ss_pred ceecCCCCcchhHHHHHHHHhcC
Q 011953 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 350 iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.+|+||.|+|||+++.+|.-.+.
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999985543
No 477
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.53 E-value=0.25 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
..|+|.|.||+|||++++.+++.++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998765
No 478
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.39 E-value=0.23 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.0
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
+.-++++|++|+|||+++..++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999999988888543
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.36 E-value=0.23 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..++++|+||+|||+++..++..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999888654
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.33 E-value=0.23 Score=45.04 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.1
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-|.+.|++|+|||++++.+++.++.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999988765
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.26 E-value=0.25 Score=51.17 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=23.4
Q ss_pred ccceecCCCCcchhHHHHH--HHHhcC---ceEEEeC
Q 011953 348 SHLLLVGDPGTGKSQFLKF--AAKLSN---RSVITTG 379 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~--ia~~~~---~~~~~~~ 379 (474)
..++|+||+|+|||+|++. ++.+.+ ..++..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5589999999999999999 444432 3455544
No 482
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.11 E-value=0.26 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=21.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhcC
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.-+.|+||+|+|||+|+++++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4478999999999999999998754
No 483
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.09 E-value=0.26 Score=48.13 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+.|+|+||+|||+|+.++...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999864
No 484
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.04 E-value=0.33 Score=47.19 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.2
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+.++|+||+|||+++..++..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 45889999999999999999865
No 485
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=86.83 E-value=0.24 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.+|.|+|+||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999998754
No 486
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.71 E-value=0.31 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=19.6
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
.-+++.|+||+|||+|+..++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 44899999999999999888753
No 487
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.53 E-value=0.12 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.2
Q ss_pred cccceecCCCCcchhHHHHHHHH
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~ 369 (474)
...|+++|++|+|||+|+.++..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999988763
No 488
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=86.47 E-value=0.25 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.9
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
..+||.|++|+|||++|-.+.+
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999988765
No 489
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=86.45 E-value=0.18 Score=45.30 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.8
Q ss_pred cccceecCCCCcchhHHHHHHHHh
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
...|+++|++|+|||+|+.++...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 367999999999999999988753
No 490
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.40 E-value=0.27 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred ccceecCCCCcchhHHHHHHHH
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAK 369 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~ 369 (474)
.+|+++|++|+|||+|+..+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 5699999999999999999754
No 491
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=86.32 E-value=0.28 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..+.|+|+||+|||+|+.++...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999854
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.31 E-value=0.29 Score=50.82 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.5
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..+.|+||.|+|||+|++.++.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999764
No 493
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=86.26 E-value=0.29 Score=47.23 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.1
Q ss_pred cccceecCCCCcchhHHHHHHHHhc
Q 011953 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 347 ~~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
..-++++|++|+|||+++..++...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3558899999999999999988653
No 494
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.08 E-value=0.31 Score=44.39 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.0
Q ss_pred ccceecCCCCcchhHHHHHHHHhcCc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~~~ 373 (474)
.-|.+.|++|+|||++++.+++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45889999999999999999976543
No 495
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.03 E-value=0.31 Score=51.17 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=23.3
Q ss_pred eccccceecCCCCcchhHHHHHHHHhcC
Q 011953 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (474)
Q Consensus 345 r~~~~iLL~G~pGtGKs~la~~ia~~~~ 372 (474)
.....+.|+||+|+|||+|++.++.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345689999999999999999997643
No 496
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=86.01 E-value=0.51 Score=51.46 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=16.0
Q ss_pred cceecCCCCcchhHHHHHHH
Q 011953 349 HLLLVGDPGTGKSQFLKFAA 368 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia 368 (474)
..|+.||||||||+++..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37999999999998655443
No 497
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.00 E-value=0.97 Score=41.26 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCCChHhHHHHHHHHHh
Q 011953 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (474)
Q Consensus 410 ~gil~iDEid~~~~~~~~~l~~~me~ 435 (474)
-.+++|||+.-+.. ...+.+.+.+
T Consensus 91 ~dvViIDEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 91 VAVIGIDEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp CSEEEESSGGGCTT--HHHHHHHHHH
T ss_pred CCEEEEEchhhhhh--HHHHHHHHHh
Confidence 36999999999864 4556666654
No 498
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=85.93 E-value=0.3 Score=46.88 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.8
Q ss_pred ccceecCCCCcchhHHHHHHHHh
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~ 370 (474)
..++|.|++|+|||++|..+.+.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 67999999999999999988864
No 499
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=85.93 E-value=0.15 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=19.8
Q ss_pred ccceecCCCCcchhHHHHHHHHhc
Q 011953 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 348 ~~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
.-+.|+||||+|||+|++++....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 458999999999999999998553
No 500
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.85 E-value=0.3 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred cceecCCCCcchhHHHHHHHHhc
Q 011953 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (474)
Q Consensus 349 ~iLL~G~pGtGKs~la~~ia~~~ 371 (474)
-|.+.|++|+|||++++.+++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998764
Done!