BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011954
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 337 IQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI 396
I+D V F+ K V+ LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 265 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 322
Query: 397 VVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIAL 456
+ +G TG L G T +A+ ++L E MG++ E V ++F + +
Sbjct: 323 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYET 380
Query: 457 VLREVLQ 463
+ +VL+
Sbjct: 381 IYYDVLR 387
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 337 IQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI 396
I+D V F+ K V+ LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 285 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 342
Query: 397 VVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIAL 456
+ +G TG L G T +A+ ++L E MG++ E V ++F + +
Sbjct: 343 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYET 400
Query: 457 VLREVLQYAK 466
+ +VL+ K
Sbjct: 401 IYYDVLRDDK 410
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 26/278 (9%)
Query: 196 YVKHLPFVAGAMID-SYTTAEYWKNRTR-----ERLGIRMPETYVVHLGNSKD-LMDIAE 248
Y K P++ ID S E+W+ R +R +PE L +K +M +
Sbjct: 144 YEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSI 203
Query: 249 DSVARRVLREHVRESLGVR---DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQ 305
D ++ + + E L + D D II VSR ++ +++ R+ K +
Sbjct: 204 DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDP----WKGIFDVIEIYRKVKEK 259
Query: 306 VPSMHAVVVG----SDMNAQTKFETELRNFVAEKKIQDHVHFVN-KTLTVSPYLASIDVL 360
+P + ++VG D FE LR + ++ + + V+ + + DV+
Sbjct: 260 IPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVI 319
Query: 361 VQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNI 420
+Q S G FG EAM PV+G A GG +V+G TG L E V +
Sbjct: 320 LQMSIREG--FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVV 373
Query: 421 VKLATHVERRLTMGKKGYERVKDRF-LEHHMSQRIALV 457
+ L H E MG K ERV+ F + HM + + ++
Sbjct: 374 LYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDIL 411
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 26/278 (9%)
Query: 196 YVKHLPFVAGAMID-SYTTAEYWKNRTR-----ERLGIRMPETYVVHLGNSKD-LMDIAE 248
Y K P++ ID S E+W+ R +R +PE L +K +M +
Sbjct: 144 YEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSI 203
Query: 249 DSVARRVLREHVRESLGVR---DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQ 305
D ++ + + E L + D D II VSR ++ +++ R+ K +
Sbjct: 204 DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDP----WKGIFDVIEIYRKVKEK 259
Query: 306 VPSMHAVVVG----SDMNAQTKFETELRNFVAEKKIQDHVHFVN-KTLTVSPYLASIDVL 360
+P + ++VG D FE LR + ++ + + V+ + + DV+
Sbjct: 260 IPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVI 319
Query: 361 VQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNI 420
+Q S G FG EAM PV+G A GG +V+G TG L E V +
Sbjct: 320 LQMSIRAG--FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVV 373
Query: 421 VKLATHVERRLTMGKKGYERVKDRF-LEHHMSQRIALV 457
+ L H E MG K ERV+ F + HM + + ++
Sbjct: 374 LYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDIL 411
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 25/266 (9%)
Query: 196 YVKHLPFVAGAMID-SYTTAEYWKNRTR-----ERLGIRMPETYVVHLGNSKDLMDIAE- 248
Y K P++ ID S E+W+ R +R +PE L +K ++
Sbjct: 144 YEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIXPPSI 203
Query: 249 DSVARRVLREHVRESLGVR---DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQ 305
D ++ + + E L + D D II VSR ++ +++ R+ K +
Sbjct: 204 DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDP----WKGIFDVIEIYRKVKEK 259
Query: 306 VPSMHAVVVG----SDMNAQTKFETELRNFVAEKKIQDHVHFVN-KTLTVSPYLASIDVL 360
+P + ++VG D FE LR + ++ + + V+ + + DV+
Sbjct: 260 IPGVQLLLVGVXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVI 319
Query: 361 VQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNI 420
+Q S G FG EA PV+G A GG +V+G TG L E V +
Sbjct: 320 LQXSIREG--FGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVV 373
Query: 421 VKLATHVERRLTMGKKGYERVKDRFL 446
+ L H E G K ERV+ F+
Sbjct: 374 LYLLKHPEVSKEXGAKAKERVRKNFI 399
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 312 VVVGSDMNAQTKFETE------LRNFVAEKKIQDHVHFVNKTLT------VSPYLASID- 358
VVVG D ++K E + + + E K+ +++ + + Y+
Sbjct: 607 VVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKG 666
Query: 359 VLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGL-LHPT-GKEGVTPL 416
VQ A E FG +EAM LP T GG EI+V+G +G + P G + L
Sbjct: 667 AFVQ--PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTL 724
Query: 417 ANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRI 454
A+ K + K G +R+++++ SQR+
Sbjct: 725 ADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRL 762
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGL-LHPT-GKEGVTPLANNIVKLATH 426
E FG +EA LP T GG EI+V+G +G + P G + LA+ K
Sbjct: 675 EAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED 734
Query: 427 VERRLTMGKKGYERVKDRFLEHHMSQRI 454
+ K G +R+++++ SQR+
Sbjct: 735 PSHWDEISKGGLQRIEEKYTWQIYSQRL 762
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVE 428
E FG +EAMA LP + T GG EI+ G G+L E +A ++K E
Sbjct: 369 EPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVL--VDPEDPEDIARGLLKAFESEE 426
Query: 429 RRLTMGKKGYERVKDRFLEHHMSQRIALVLREV 461
+KG +RV++R+ ++ V++E+
Sbjct: 427 TWSAYQEKGKQRVEERYTWQETARGYLEVIQEI 459
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 257 REHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGS 316
RE R+ G+++ L + S KG D + + + +R L VVG
Sbjct: 183 REIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTL------LFVVGQ 236
Query: 317 DMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375
D KFE +AEK ++ +VHF + VS +A+ D+L+ A E G +
Sbjct: 237 D--KPRKFEA-----LAEKLGVRSNVHFFSGRNDVSELMAAADLLLH--PAYQEAAGIVL 287
Query: 376 IEAMAFQLPVLGTAAGGTMEIVVNGTTG 403
+EA+ LPVL TA G + + G
Sbjct: 288 LEAITAGLPVLTTAVCGYAHYIADANCG 315
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 257 REHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGS 316
+ R+ LG D + A + + KGQD + + Q+I + P ++VGS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMP---QVIAAR----PDAQLLIVGS 237
Query: 317 DMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARG-----E 369
++E+ LR + + +V F+ + + LA+ D+ ++ RG E
Sbjct: 238 G-----RYESTLRRLATD--VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 370 CFGRITIEAMAFQLPVLGTAAGGTMEIVVNGT 401
G + +EA A +PV+ +GG E V T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 257 REHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGS 316
+ R+ LG D + A + + KGQD + + Q+I + P ++VGS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMP---QVIAAR----PDAQLLIVGS 237
Query: 317 DMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARG-----E 369
++E+ LR + + +V F+ + + LA+ D+ ++ RG E
Sbjct: 238 G-----RYESTLRRLATD--VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 370 CFGRITIEAMAFQLPVLGTAAGGTMEIVVNGT 401
G + +EA A +PV+ +GG E V T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 268 DDDLLFAIINSVSRG-KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFET 326
D+ + F I RG KG D+ L ++++++ KK + M +++G K +
Sbjct: 249 DEGVTFMFIGRFDRGQKGVDVLL----KAIEILSSKK-EFQEMRFIIIG-------KGDP 296
Query: 327 ELRNFVAE-KKIQDHVHFVNKTLT---VSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382
EL + ++ +V + + L+ V S+D ++ S E FG + +EAM
Sbjct: 297 ELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLG 354
Query: 383 LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422
+ +A GG +I+ N TG+L G G LAN I+K
Sbjct: 355 AIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 268 DDDLLFAIINSVSRG-KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFET 326
D+ + F I RG KG D+ L ++++++ KK + M +++G K +
Sbjct: 249 DEGVTFMFIGRFDRGQKGVDVLL----KAIEILSSKK-EFQEMRFIIIG-------KGDP 296
Query: 327 ELRNFVAE-KKIQDHVHFVNKTLT---VSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382
EL + ++ +V + + L+ V S+D ++ S E FG + +EAM
Sbjct: 297 ELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLG 354
Query: 383 LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422
+ +A GG +I+ N TG+L G G LAN I+K
Sbjct: 355 AIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 23/214 (10%)
Query: 234 VVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFY 293
VV G +L D R RE LG+ + A + + KG + + +
Sbjct: 212 VVSPGADVELYSPGNDRATERSRRE-----LGIPLHTKVVAFVGRLQPFKGPQVLIKAVA 266
Query: 294 ESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK---TLTV 350
++ L+V ++ G +T R+ E ++ + F++ + V
Sbjct: 267 ALFDRDPDRNLRV-----IICGGPSGPNATPDT-YRHMAEELGVEKRIRFLDPRPPSELV 320
Query: 351 SPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGK 410
+ Y A+ V V + E FG + +EA A PV+ GG V G TGLL
Sbjct: 321 AVYRAADIVAVPSFN---ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----V 373
Query: 411 EGVTP--LANNIVKLATHVERRLTMGKKGYERVK 442
+G +P A+ + L E R+ MG+ E +
Sbjct: 374 DGHSPHAWADALATLLDDDETRIRMGEDAVEHAR 407
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 268 DDDLLFAIINSVSRG-KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFET 326
D+ + F I RG KG D+ L ++++++ KK + M +++G K +
Sbjct: 250 DEGVTFMFIGRFDRGQKGVDVLL----KAIEILSSKK-EFQEMRFIIIG-------KGDP 297
Query: 327 ELRNFVAE-KKIQDHVHFVNKTLT---VSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382
EL + ++ +V + + L+ V S+D ++ S E FG + +EAM
Sbjct: 298 ELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLG 355
Query: 383 LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422
+ +A GG +I+ N TG+L G G LAN I+K
Sbjct: 356 AIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 392
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 23/214 (10%)
Query: 234 VVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFY 293
VV G +L D R RE LG+ + A + + KG + + +
Sbjct: 192 VVSPGADVELYSPGNDRATERSRRE-----LGIPLHTKVVAFVGRLQPFKGPQVLIKAVA 246
Query: 294 ESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK---TLTV 350
++ L+V ++ G +T R+ E ++ + F++ + V
Sbjct: 247 ALFDRDPDRNLRV-----IICGGPSGPNATPDT-YRHMAEELGVEKRIRFLDPRPPSELV 300
Query: 351 SPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGK 410
+ Y A+ V V + E FG + +EA A PV+ GG V G TGLL
Sbjct: 301 AVYRAADIVAVPSFN---ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----V 353
Query: 411 EGVTP--LANNIVKLATHVERRLTMGKKGYERVK 442
+G +P A+ + L E R+ MG+ E +
Sbjct: 354 DGHSPHAWADALATLLDDDETRIRMGEDAVEHAR 387
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 268 DDDLLFAIINSVSRG-KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFET 326
D+ + F I RG KG D+ L ++++++ KK + M +++G K +
Sbjct: 34 DEGVTFMFIGRFDRGQKGVDVLL----KAIEILSSKK-EFQEMRFIIIG-------KGDP 81
Query: 327 ELRNFVAE-KKIQDHVHFVNKTLT---VSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382
EL + ++ +V + + L+ V S+D ++ S E FG + +EAM
Sbjct: 82 ELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYF--EPFGLVALEAMCLG 139
Query: 383 LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422
+ +A GG +I+ N TG+L G G LAN I+K
Sbjct: 140 AIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 176
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNF 331
L A I + KG D+ + E +Q + +Q+ V++G+ + KFE L++
Sbjct: 329 LIAFIGRLEEQKGPDVMAAAIPELMQ----EDVQI-----VLLGT---GKKKFEKLLKSM 376
Query: 332 VAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389
E+K V V K +L A DVL S R E G I ++ M + P +
Sbjct: 377 --EEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPS--RFEPCGLIQLQGMRYGTPCACAS 432
Query: 390 AGGTMEIVVNGTTGL 404
GG ++ V+ G TG
Sbjct: 433 TGGLVDTVIEGKTGF 447
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 366 ARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLL 405
A+ E FG IEA A PV+ GG E V+N TG L
Sbjct: 105 AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYL 144
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 242 DLMDIAEDSVARRVLREHVR---ESLGVRDDDLLFAIINSVSRGKGQDL----FLHSFYE 294
DL+D+ E S R + +V +SL + + +LL+ I N+V GQD L ++
Sbjct: 237 DLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWD 296
Query: 295 SLQLIR---EKKLQVPSM-HAVVVGSDMNAQTKFETEL 328
L L+R + K Q+P VV+ SD + F ++
Sbjct: 297 RLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQI 334
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 257 REHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGS 316
RE R+ G+++ L + S KG D + + + +R L VVG
Sbjct: 183 REIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTL------LFVVGQ 236
Query: 317 DMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375
D KFE +AEK ++ +VHF + VS A+ D+L+ A E G +
Sbjct: 237 DK--PRKFEA-----LAEKLGVRSNVHFFSGRNDVSELXAAADLLLH--PAYQEAAGIVL 287
Query: 376 IEAMAFQLPVLGTAAGGTMEIVVNGTTGLL 405
+EA+ LPVL TA G + + G +
Sbjct: 288 LEAITAGLPVLTTAVCGYAHYIADANCGTV 317
>pdb|1RSS|A Chain A, Ribosomal Protein S7 From Thermus Thermophilus
Length = 151
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 15 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 53
>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1HR0|G Chain G, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|J Chain J, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1JGO|J Chain J, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|J Chain J, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|J Chain J, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1ML5|J Chain J, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|G Chain G, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|G Chain G, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|G Chain G, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|G Chain G, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|J Chain J, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|G Chain G, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|G Chain G, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|G Chain G, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|G Chain G, 30s Ribosome + Designer Antibiotic
pdb|2HHH|G Chain G, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2J00|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
pdb|2J02|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
pdb|2HGI|J Chain J, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|J Chain J, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|J Chain J, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2OW8|HH Chain h, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
pdb|2UU9|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
pdb|2UUA|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
pdb|2UUB|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
pdb|2UUC|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
pdb|2UXC|G Chain G, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2UXB|G Chain G, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2V46|G Chain G, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|G Chain G, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2UXD|G Chain G, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2QNH|HH Chain h, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
pdb|2VQE|G Chain G, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|G Chain G, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3D5A|G Chain G, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|G Chain G, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1E|G Chain G, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|G Chain G, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|2WDG|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
pdb|2WDH|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
pdb|2WDK|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
pdb|2WDM|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
pdb|2WH1|G Chain G, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|G Chain G, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
pdb|3HUW|G Chain G, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|G Chain G, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
pdb|2WRI|G Chain G, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|G Chain G, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2WRN|G Chain G, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|G Chain G, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
pdb|3KIQ|GG Chain g, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
pdb|3KIS|GG Chain g, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
pdb|3KIU|GG Chain g, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
pdb|3KIX|GG Chain g, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
pdb|3KNH|G Chain G, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
pdb|3KNJ|G Chain G, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
pdb|3KNL|G Chain G, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
pdb|3KNN|G Chain G, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
pdb|3I8G|J Chain J, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8H|J Chain J, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9B|J Chain J, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9D|J Chain J, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9R|G Chain G, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|G Chain G, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XFZ|G Chain G, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|G Chain G, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
pdb|3OTO|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3OGE|G Chain G, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OGY|G Chain G, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHC|G Chain G, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHD|G Chain G, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHY|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI0|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI2|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI4|G Chain G, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQD|G Chain G, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XSY|G Chain G, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|G Chain G, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0U|G Chain G, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|G Chain G, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Y|G Chain G, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|G Chain G, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|G Chain G, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|G Chain G, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|G Chain G, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|G Chain G, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVO|G Chain G, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3T1H|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|3UXS|G Chain G, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXT|G Chain G, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
pdb|3TVF|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVG|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYD|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYF|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ3|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ4|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ6|J Chain J, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
pdb|3UZ7|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZG|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZI|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZL|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZM|J Chain J, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABR|G Chain G, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DH9|G Chain G, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHB|G Chain G, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V22|G Chain G, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
pdb|3V24|G Chain G, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
pdb|3V26|G Chain G, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
pdb|3V28|G Chain G, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
pdb|3V2C|G Chain G, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
pdb|3V2E|G Chain G, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
pdb|4DR1|G Chain G, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
pdb|4DR2|G Chain G, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR3|G Chain G, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
pdb|4DR4|G Chain G, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR5|G Chain G, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
pdb|4DR6|G Chain G, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
pdb|4DR7|G Chain G, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
pdb|4G5K|J Chain J, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5M|J Chain J, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4G5T|J Chain J, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5V|J Chain J, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4DUY|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
pdb|4DUZ|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
pdb|4DV0|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
pdb|4DV1|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
pdb|4DV2|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
pdb|4DV3|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
pdb|4DV4|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
pdb|4DV5|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
pdb|4DV6|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
pdb|4DV7|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
Length = 156
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 20 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 58
>pdb|1X18|F Chain F, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 154
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 19 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 57
>pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1J5E|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1PNS|G Chain G, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|G Chain G, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|G Chain G, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|G Chain G, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|G Chain G, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|G Chain G, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|G Chain G, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|2E5L|G Chain G, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
pdb|3FIC|G Chain G, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2ZM6|G Chain G, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
pdb|3MR8|G Chain G, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|G Chain G, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
pdb|3PYN|G Chain G, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYQ|G Chain G, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
pdb|3PYS|G Chain G, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYU|G Chain G, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome.
pdb|4AQY|G Chain G, Structure Of Ribosome-Apramycin Complexes
Length = 155
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 19 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 57
>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
Length = 151
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 20 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 58
>pdb|1EG0|D Chain D, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 146
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 20 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 58
>pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit
pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Small Ribosomal
Subunit From Thermus Thermophilus
Length = 135
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307
D L+ A IN + R ++L FY++ ++I+EK Q P
Sbjct: 9 DVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEP 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,536,360
Number of Sequences: 62578
Number of extensions: 479137
Number of successful extensions: 1105
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 33
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)