Query 011954
Match_columns 474
No_of_seqs 377 out of 1591
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 2.9E-45 6.3E-50 356.7 35.5 355 75-462 2-374 (374)
2 PLN02316 synthase/transferase 100.0 7.4E-44 1.6E-48 366.4 39.9 388 50-462 566-1035(1036)
3 PRK14099 glycogen synthase; Pr 100.0 6.8E-44 1.5E-48 352.7 36.2 371 72-464 1-482 (485)
4 PLN02939 transferase, transfer 100.0 1.2E-43 2.7E-48 358.0 37.6 376 73-466 480-972 (977)
5 PLN02871 UDP-sulfoquinovose:DA 100.0 9.6E-44 2.1E-48 354.0 35.6 356 72-466 56-440 (465)
6 PRK00654 glgA glycogen synthas 100.0 1.5E-43 3.3E-48 351.8 34.7 368 75-463 1-465 (466)
7 PRK15427 colanic acid biosynth 100.0 1.1E-43 2.4E-48 345.9 32.3 349 75-460 1-405 (406)
8 cd04962 GT1_like_5 This family 100.0 1.9E-43 4.1E-48 343.9 33.6 356 75-461 1-371 (371)
9 cd03796 GT1_PIG-A_like This fa 100.0 2.1E-43 4.5E-48 345.6 34.0 343 76-464 1-371 (398)
10 PRK15179 Vi polysaccharide bio 100.0 1.7E-43 3.6E-48 357.1 33.3 353 76-459 283-692 (694)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 4.5E-43 9.8E-48 346.3 34.4 352 87-458 26-438 (439)
12 PRK10307 putative glycosyl tra 100.0 6.2E-43 1.3E-47 344.2 33.7 357 75-464 1-411 (412)
13 TIGR03449 mycothiol_MshA UDP-N 100.0 1.1E-42 2.4E-47 342.2 35.0 344 86-463 19-404 (405)
14 cd03792 GT1_Trehalose_phosphor 100.0 3.3E-42 7.1E-47 334.6 32.4 353 76-461 1-372 (372)
15 PRK15490 Vi polysaccharide bio 100.0 7.5E-42 1.6E-46 329.1 34.2 348 76-460 163-575 (578)
16 TIGR02095 glgA glycogen/starch 100.0 7.3E-42 1.6E-46 341.5 34.4 365 75-461 1-473 (473)
17 cd04951 GT1_WbdM_like This fam 100.0 2E-41 4.4E-46 328.1 33.8 354 76-459 1-359 (360)
18 TIGR02149 glgA_Coryne glycogen 100.0 2.4E-41 5.2E-46 331.0 33.1 344 75-462 1-388 (388)
19 PRK14098 glycogen synthase; Pr 100.0 4.3E-41 9.3E-46 333.2 34.2 368 74-463 5-488 (489)
20 PRK15484 lipopolysaccharide 1, 100.0 9.6E-41 2.1E-45 323.5 34.3 340 75-462 3-379 (380)
21 TIGR02468 sucrsPsyn_pln sucros 100.0 1.4E-40 3.1E-45 341.1 35.3 378 72-465 167-675 (1050)
22 cd03805 GT1_ALG2_like This fam 100.0 5.3E-41 1.1E-45 329.1 29.8 347 75-454 1-392 (392)
23 cd03819 GT1_WavL_like This fam 100.0 1.7E-40 3.7E-45 321.1 31.6 336 82-450 5-355 (355)
24 cd03807 GT1_WbnK_like This fam 100.0 3.3E-40 7.2E-45 319.3 32.9 345 76-459 1-365 (365)
25 TIGR02470 sucr_synth sucrose s 100.0 7.3E-40 1.6E-44 329.8 35.0 371 73-458 254-745 (784)
26 cd03791 GT1_Glycogen_synthase_ 100.0 4.6E-40 9.9E-45 330.0 33.1 364 76-460 1-476 (476)
27 PRK09922 UDP-D-galactose:(gluc 100.0 4E-40 8.7E-45 317.9 29.8 342 75-463 1-358 (359)
28 cd03818 GT1_ExpC_like This fam 100.0 6.2E-40 1.3E-44 321.0 30.4 347 76-456 1-396 (396)
29 cd03825 GT1_wcfI_like This fam 100.0 4.3E-39 9.4E-44 312.4 32.0 330 75-461 1-365 (365)
30 cd03812 GT1_CapH_like This fam 100.0 4.2E-39 9.1E-44 311.7 30.3 329 76-443 1-348 (358)
31 cd05844 GT1_like_7 Glycosyltra 100.0 3.3E-39 7.2E-44 313.6 29.1 338 76-456 1-366 (367)
32 cd03800 GT1_Sucrose_synthase T 100.0 1.2E-38 2.6E-43 313.2 32.2 337 87-455 21-397 (398)
33 cd03802 GT1_AviGT4_like This f 100.0 5.4E-39 1.2E-43 308.1 28.4 321 75-459 1-335 (335)
34 cd03822 GT1_ecORF704_like This 100.0 2.9E-38 6.3E-43 306.5 33.0 354 76-459 1-366 (366)
35 PLN02949 transferase, transfer 100.0 2.4E-38 5.2E-43 309.9 32.3 354 74-464 33-460 (463)
36 PRK10125 putative glycosyl tra 100.0 6.4E-39 1.4E-43 311.1 27.7 338 75-461 1-405 (405)
37 cd03799 GT1_amsK_like This is 100.0 1.9E-38 4E-43 306.8 29.7 339 76-453 1-354 (355)
38 cd03795 GT1_like_4 This family 100.0 5.4E-38 1.2E-42 303.8 30.2 340 76-451 1-357 (357)
39 PLN02846 digalactosyldiacylgly 100.0 8.3E-38 1.8E-42 300.9 30.5 337 73-460 3-391 (462)
40 cd03821 GT1_Bme6_like This fam 100.0 1.4E-37 2.9E-42 302.2 31.9 349 76-456 1-375 (375)
41 KOG1111 N-acetylglucosaminyltr 100.0 7.5E-39 1.6E-43 283.1 20.1 341 76-465 2-371 (426)
42 PLN00142 sucrose synthase 100.0 1.4E-37 2.9E-42 313.4 30.8 219 229-458 519-768 (815)
43 cd03820 GT1_amsD_like This fam 100.0 3.2E-37 6.8E-42 296.3 32.0 329 76-455 1-347 (348)
44 cd03814 GT1_like_2 This family 100.0 2.6E-37 5.7E-42 299.5 29.6 342 76-459 1-364 (364)
45 cd03813 GT1_like_3 This family 100.0 7.6E-38 1.7E-42 311.7 25.5 276 149-459 172-475 (475)
46 cd03801 GT1_YqgM_like This fam 100.0 6.9E-37 1.5E-41 296.2 30.0 351 76-459 1-374 (374)
47 cd03817 GT1_UGDG_like This fam 100.0 2.2E-36 4.8E-41 293.7 33.0 347 76-460 1-373 (374)
48 cd03806 GT1_ALG11_like This fa 100.0 2.3E-36 4.9E-41 295.8 32.4 342 76-452 2-418 (419)
49 cd04955 GT1_like_6 This family 100.0 2.9E-36 6.4E-41 292.4 32.5 331 76-459 1-363 (363)
50 cd03811 GT1_WabH_like This fam 100.0 1.2E-36 2.7E-41 292.6 29.2 336 76-446 1-352 (353)
51 cd03808 GT1_cap1E_like This fa 100.0 4.6E-36 9.9E-41 289.5 30.9 331 76-455 1-358 (359)
52 cd03816 GT1_ALG1_like This fam 100.0 6.6E-36 1.4E-40 292.9 32.3 346 74-453 3-409 (415)
53 cd03809 GT1_mtfB_like This fam 100.0 1E-36 2.2E-41 295.5 26.2 341 76-456 1-365 (365)
54 cd03823 GT1_ExpE7_like This fa 100.0 3.4E-36 7.4E-41 291.0 29.3 335 76-459 1-358 (359)
55 TIGR03087 stp1 sugar transfera 100.0 5.5E-36 1.2E-40 293.1 29.1 342 77-459 1-395 (397)
56 cd03798 GT1_wlbH_like This fam 100.0 1.1E-35 2.4E-40 288.5 30.1 350 77-461 1-377 (377)
57 cd03794 GT1_wbuB_like This fam 100.0 5.2E-35 1.1E-39 285.7 30.9 345 76-455 1-394 (394)
58 cd04946 GT1_AmsK_like This fam 100.0 2.2E-34 4.8E-39 281.4 31.7 340 77-455 2-406 (407)
59 PLN02501 digalactosyldiacylgly 100.0 4.3E-34 9.2E-39 278.2 30.1 334 74-458 322-707 (794)
60 TIGR02918 accessory Sec system 100.0 1.8E-34 3.8E-39 285.4 27.8 273 148-461 209-500 (500)
61 KOG0853 Glycosyltransferase [C 100.0 4.3E-33 9.4E-38 263.4 24.7 383 74-464 34-471 (495)
62 PHA01630 putative group 1 glyc 100.0 1E-32 2.3E-37 259.6 27.1 295 91-460 14-330 (331)
63 cd03804 GT1_wbaZ_like This fam 100.0 4.2E-33 9.1E-38 268.8 25.0 312 76-454 1-350 (351)
64 cd04949 GT1_gtfA_like This fam 100.0 7.3E-32 1.6E-36 262.4 24.9 263 149-454 98-372 (372)
65 PHA01633 putative glycosyl tra 100.0 3.4E-31 7.3E-36 245.8 27.6 241 178-456 71-335 (335)
66 PLN02275 transferase, transfer 100.0 9.4E-31 2E-35 253.0 26.1 307 76-424 6-371 (371)
67 COG0297 GlgA Glycogen synthase 100.0 4.9E-29 1.1E-33 240.2 30.5 371 75-465 1-482 (487)
68 PRK00726 murG undecaprenyldiph 100.0 5.7E-29 1.2E-33 240.3 27.3 323 74-459 1-356 (357)
69 PRK05749 3-deoxy-D-manno-octul 100.0 1.3E-27 2.8E-32 236.1 30.2 333 89-464 62-423 (425)
70 PRK13609 diacylglycerol glucos 100.0 1.3E-27 2.7E-32 232.8 27.0 337 73-461 3-372 (380)
71 cd03785 GT1_MurG MurG is an N- 100.0 1.4E-27 3E-32 230.4 26.2 317 77-452 2-349 (350)
72 cd03788 GT1_TPS Trehalose-6-Ph 100.0 8E-28 1.7E-32 237.3 24.4 292 149-457 130-458 (460)
73 cd03793 GT1_Glycogen_synthase_ 100.0 2.2E-27 4.8E-32 229.4 26.6 303 149-463 147-589 (590)
74 TIGR02400 trehalose_OtsA alpha 100.0 2.4E-27 5.2E-32 231.7 27.1 289 149-458 126-454 (456)
75 TIGR01133 murG undecaprenyldip 100.0 2.6E-27 5.5E-32 228.3 25.6 313 75-452 1-346 (348)
76 PF00534 Glycos_transf_1: Glyc 100.0 2.3E-27 4.9E-32 204.5 17.6 169 257-440 2-172 (172)
77 PLN02605 monogalactosyldiacylg 100.0 4.7E-26 1E-30 221.2 26.5 275 142-457 92-378 (382)
78 PRK13608 diacylglycerol glucos 99.9 1.6E-25 3.4E-30 217.8 27.0 341 73-464 4-375 (391)
79 PLN03063 alpha,alpha-trehalose 99.9 8.1E-25 1.8E-29 226.8 27.4 295 150-464 147-481 (797)
80 cd01635 Glycosyltransferase_GT 99.9 8E-24 1.7E-28 190.9 20.6 224 77-406 1-229 (229)
81 PRK14501 putative bifunctional 99.9 1.6E-23 3.4E-28 218.0 24.7 294 149-464 132-466 (726)
82 cd04950 GT1_like_1 Glycosyltra 99.9 1.9E-23 4.2E-28 202.4 22.1 332 77-460 6-371 (373)
83 KOG1387 Glycosyltransferase [C 99.9 8.3E-22 1.8E-26 174.1 24.9 355 74-464 43-462 (465)
84 PRK00025 lpxB lipid-A-disaccha 99.9 7.4E-21 1.6E-25 185.5 26.9 339 74-463 1-376 (380)
85 TIGR02398 gluc_glyc_Psyn gluco 99.9 1.4E-20 3E-25 182.9 28.2 211 231-459 249-481 (487)
86 COG0438 RfaG Glycosyltransfera 99.9 7.2E-20 1.6E-24 176.1 31.3 203 231-463 173-379 (381)
87 TIGR00236 wecB UDP-N-acetylglu 99.9 6.8E-21 1.5E-25 184.4 22.6 337 75-456 1-363 (365)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 4.7E-20 1E-24 178.8 23.7 315 76-434 1-345 (363)
89 PRK09814 beta-1,6-galactofuran 99.9 7.6E-20 1.6E-24 174.1 22.7 289 87-451 15-322 (333)
90 PLN03064 alpha,alpha-trehalose 99.8 2.5E-18 5.4E-23 177.6 24.2 294 150-463 231-564 (934)
91 TIGR02094 more_P_ylases alpha- 99.8 1.2E-17 2.7E-22 167.3 25.7 186 266-458 385-598 (601)
92 KOG2941 Beta-1,4-mannosyltrans 99.8 4E-16 8.7E-21 138.5 30.0 340 91-455 27-436 (444)
93 TIGR03713 acc_sec_asp1 accesso 99.8 1.7E-17 3.7E-22 164.4 23.5 218 199-458 269-519 (519)
94 PF13692 Glyco_trans_1_4: Glyc 99.8 9.3E-19 2E-23 144.1 8.3 133 270-426 2-135 (135)
95 TIGR00215 lpxB lipid-A-disacch 99.8 3.2E-16 6.8E-21 151.7 26.3 323 75-440 6-365 (385)
96 cd04299 GT1_Glycogen_Phosphory 99.7 6E-15 1.3E-19 150.6 24.6 192 266-461 474-691 (778)
97 PRK12446 undecaprenyldiphospho 99.6 1.5E-12 3.3E-17 124.3 26.3 302 75-431 2-330 (352)
98 PF00982 Glyco_transf_20: Glyc 99.6 1.1E-12 2.5E-17 128.2 25.6 296 149-459 140-473 (474)
99 COG0707 MurG UDP-N-acetylgluco 99.6 4.8E-12 1E-16 119.4 28.6 250 143-443 84-341 (357)
100 PF05693 Glycogen_syn: Glycoge 99.6 5.8E-13 1.3E-17 129.0 22.3 254 203-465 222-586 (633)
101 PF13524 Glyco_trans_1_2: Glyc 99.6 1.6E-14 3.5E-19 109.8 9.0 92 359-456 1-92 (92)
102 PRK10117 trehalose-6-phosphate 99.5 4.1E-12 8.8E-17 122.7 26.3 298 149-464 122-457 (474)
103 TIGR02919 accessory Sec system 99.5 4E-12 8.6E-17 123.4 21.6 134 286-441 291-426 (438)
104 PF13439 Glyco_transf_4: Glyco 99.5 6.7E-14 1.4E-18 120.7 8.1 158 77-245 1-177 (177)
105 PLN02205 alpha,alpha-trehalose 99.4 8.4E-11 1.8E-15 123.0 28.1 297 152-463 203-554 (854)
106 COG0380 OtsA Trehalose-6-phosp 99.4 3.6E-10 7.7E-15 108.8 26.8 296 149-460 146-479 (486)
107 TIGR03492 conserved hypothetic 99.4 1.8E-10 3.8E-15 111.8 22.3 189 231-456 181-394 (396)
108 COG3914 Spy Predicted O-linked 99.3 9.6E-10 2.1E-14 105.3 25.8 332 73-464 258-617 (620)
109 TIGR03590 PseG pseudaminic aci 99.3 3.8E-10 8.2E-15 104.3 22.1 253 76-390 1-268 (279)
110 COG1519 KdtA 3-deoxy-D-manno-o 99.3 3.1E-09 6.7E-14 99.1 23.7 310 91-443 63-403 (419)
111 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 4.5E-09 9.8E-14 101.0 24.0 199 224-457 161-364 (365)
112 PF04007 DUF354: Protein of un 99.2 3.8E-09 8.3E-14 98.6 21.9 280 75-424 1-308 (335)
113 cd03784 GT1_Gtf_like This fami 99.2 2.6E-09 5.6E-14 105.1 21.5 136 268-436 238-381 (401)
114 PF13844 Glyco_transf_41: Glyc 99.2 1E-09 2.3E-14 105.7 17.3 182 261-462 276-468 (468)
115 PF13528 Glyco_trans_1_3: Glyc 99.2 8.8E-10 1.9E-14 104.7 16.0 120 268-423 191-317 (318)
116 COG0763 LpxB Lipid A disacchar 99.1 1.7E-08 3.7E-13 93.3 21.8 319 74-438 1-356 (381)
117 PF02684 LpxB: Lipid-A-disacch 99.1 3.1E-08 6.7E-13 93.9 21.8 301 90-434 11-348 (373)
118 COG0381 WecB UDP-N-acetylgluco 99.0 1.4E-07 3.1E-12 87.5 24.0 347 72-462 1-372 (383)
119 PF13579 Glyco_trans_4_4: Glyc 99.0 6.2E-10 1.4E-14 94.0 6.9 135 87-238 1-160 (160)
120 TIGR00661 MJ1255 conserved hyp 98.8 7.6E-07 1.6E-11 84.5 21.6 80 338-426 228-314 (321)
121 PRK01021 lpxB lipid-A-disaccha 98.8 2.5E-06 5.3E-11 84.7 23.9 318 74-439 226-584 (608)
122 COG4641 Uncharacterized protei 98.7 1.2E-06 2.6E-11 80.8 17.9 326 87-464 14-365 (373)
123 COG3980 spsG Spore coat polysa 98.7 4.9E-06 1.1E-10 73.3 18.7 295 75-437 1-304 (318)
124 PF09314 DUF1972: Domain of un 98.7 5.7E-07 1.2E-11 76.1 12.6 152 74-240 1-185 (185)
125 PF04464 Glyphos_transf: CDP-G 98.6 3.8E-06 8.2E-11 81.5 18.7 304 74-432 13-342 (369)
126 TIGR01426 MGT glycosyltransfer 98.5 2.1E-06 4.5E-11 84.1 15.4 114 337-458 273-390 (392)
127 PRK14089 ipid-A-disaccharide s 98.5 7.2E-06 1.6E-10 77.5 18.2 247 74-388 1-260 (347)
128 COG1819 Glycosyl transferases, 98.5 9.6E-06 2.1E-10 79.0 19.4 158 269-457 237-398 (406)
129 PRK02797 4-alpha-L-fucosyltran 98.5 1.2E-05 2.5E-10 72.7 16.5 173 268-464 144-320 (322)
130 PF02350 Epimerase_2: UDP-N-ac 98.4 5E-06 1.1E-10 79.2 14.2 272 142-458 59-345 (346)
131 COG1817 Uncharacterized protei 98.4 0.0001 2.2E-09 66.2 20.7 270 91-428 14-316 (346)
132 PF13477 Glyco_trans_4_2: Glyc 98.3 6.4E-06 1.4E-10 67.7 10.4 105 76-187 1-109 (139)
133 KOG3742 Glycogen synthase [Car 98.3 5.3E-05 1.1E-09 70.8 17.1 110 348-460 492-612 (692)
134 PRK10017 colanic acid biosynth 98.3 0.0034 7.3E-08 61.4 30.2 343 75-439 1-405 (426)
135 PF07429 Glyco_transf_56: 4-al 98.3 0.00056 1.2E-08 62.9 22.3 170 268-461 183-356 (360)
136 COG0058 GlgP Glucan phosphoryl 98.2 5.8E-05 1.3E-09 76.6 16.3 143 266-410 483-632 (750)
137 COG4671 Predicted glycosyl tra 98.2 0.00065 1.4E-08 62.2 21.0 141 267-426 217-365 (400)
138 KOG4626 O-linked N-acetylgluco 98.1 0.00063 1.4E-08 66.6 20.8 238 200-466 697-946 (966)
139 PF04101 Glyco_tran_28_C: Glyc 98.0 3E-06 6.5E-11 72.1 2.0 93 339-437 55-155 (167)
140 PRK14986 glycogen phosphorylas 97.9 0.00019 4.1E-09 73.9 14.3 155 261-419 532-703 (815)
141 PF08323 Glyco_transf_5: Starc 97.9 2.5E-05 5.5E-10 70.7 7.2 40 76-115 1-44 (245)
142 PHA03392 egt ecdysteroid UDP-g 97.9 0.00028 6E-09 70.9 14.5 140 269-440 296-446 (507)
143 PF00343 Phosphorylase: Carboh 97.8 0.0011 2.3E-08 67.6 17.1 148 260-408 432-596 (713)
144 TIGR02093 P_ylase glycogen/sta 97.7 0.00029 6.2E-09 72.4 11.3 156 260-419 515-687 (794)
145 PRK14985 maltodextrin phosphor 97.7 0.00046 9.9E-09 70.9 11.8 148 261-409 518-682 (798)
146 cd04300 GT1_Glycogen_Phosphory 97.6 0.00054 1.2E-08 70.7 11.9 154 261-418 519-689 (797)
147 COG0859 RfaF ADP-heptose:LPS h 97.3 0.041 8.8E-07 52.5 20.0 100 269-389 175-277 (334)
148 KOG1050 Trehalose-6-phosphate 97.1 0.028 6E-07 58.3 17.2 192 231-434 240-448 (732)
149 cd03789 GT1_LPS_heptosyltransf 97.1 0.042 9E-07 51.0 16.7 97 272-389 124-224 (279)
150 PRK10422 lipopolysaccharide co 97.0 0.083 1.8E-06 50.8 19.1 102 269-389 183-288 (352)
151 TIGR02195 heptsyl_trn_II lipop 97.0 0.071 1.5E-06 50.9 18.5 109 258-388 162-276 (334)
152 PRK10916 ADP-heptose:LPS hepto 96.9 0.066 1.4E-06 51.5 17.3 110 258-388 168-286 (348)
153 PF00201 UDPGT: UDP-glucoronos 96.8 0.0076 1.7E-07 61.2 10.3 140 268-435 275-418 (500)
154 TIGR02193 heptsyl_trn_I lipopo 96.8 0.34 7.3E-06 45.9 20.9 98 268-388 178-279 (319)
155 PRK10964 ADP-heptose:LPS hepto 96.8 0.29 6.4E-06 46.4 20.2 99 268-389 177-279 (322)
156 PLN02448 UDP-glycosyltransfera 96.8 0.044 9.6E-07 54.7 15.0 96 339-439 323-429 (459)
157 PLN02670 transferase, transfer 96.7 0.044 9.5E-07 54.5 14.5 115 341-461 341-466 (472)
158 PF11440 AGT: DNA alpha-glucos 96.6 0.12 2.6E-06 46.1 14.6 312 87-426 1-353 (355)
159 TIGR03609 S_layer_CsaB polysac 96.6 0.39 8.5E-06 45.0 19.3 87 285-389 190-276 (298)
160 PLN03007 UDP-glucosyltransfera 96.6 0.11 2.4E-06 52.2 16.3 84 339-427 345-441 (482)
161 PLN02410 UDP-glucoronosyl/UDP- 96.5 0.045 9.8E-07 54.2 12.9 91 339-438 324-421 (451)
162 PLN02562 UDP-glycosyltransfera 96.4 0.064 1.4E-06 53.2 13.1 88 339-433 328-420 (448)
163 PLN03004 UDP-glycosyltransfera 96.1 0.079 1.7E-06 52.4 12.1 85 339-428 334-426 (451)
164 PF15024 Glyco_transf_18: Glyc 95.9 0.79 1.7E-05 45.7 17.6 146 276-460 283-455 (559)
165 PLN02863 UDP-glucoronosyl/UDP- 95.8 0.44 9.5E-06 47.7 16.0 83 339-428 343-436 (477)
166 PLN02167 UDP-glycosyltransfera 95.8 0.28 6.2E-06 49.2 14.5 81 340-427 341-435 (475)
167 COG3660 Predicted nucleoside-d 95.7 1.4 3E-05 39.3 21.8 109 268-391 160-274 (329)
168 COG2327 WcaK Polysaccharide py 95.6 2.2 4.8E-05 40.8 21.3 100 324-432 251-357 (385)
169 PLN02555 limonoid glucosyltran 95.5 0.53 1.1E-05 47.1 15.1 94 339-440 337-442 (480)
170 PF12038 DUF3524: Domain of un 95.5 0.23 4.9E-06 41.0 10.2 130 75-225 1-142 (168)
171 PLN02152 indole-3-acetate beta 95.4 0.24 5.3E-06 49.1 12.5 84 339-427 327-418 (455)
172 PLN02210 UDP-glucosyl transfer 95.4 0.38 8.3E-06 47.9 14.0 84 340-428 325-417 (456)
173 PLN02173 UDP-glucosyl transfer 95.3 0.46 9.9E-06 47.1 13.7 95 339-439 317-420 (449)
174 PLN00414 glycosyltransferase f 95.2 1.3 2.8E-05 44.0 16.9 94 341-441 314-418 (446)
175 PF01075 Glyco_transf_9: Glyco 95.2 0.75 1.6E-05 41.6 14.3 101 268-388 104-208 (247)
176 PLN02208 glycosyltransferase f 95.2 0.52 1.1E-05 46.7 13.8 96 339-439 311-415 (442)
177 PLN02764 glycosyltransferase f 95.0 0.7 1.5E-05 45.8 14.1 93 340-439 318-421 (453)
178 PF12000 Glyco_trans_4_3: Gkyc 95.0 0.15 3.3E-06 42.8 8.2 15 230-244 156-170 (171)
179 PF05159 Capsule_synth: Capsul 95.0 0.23 5E-06 45.7 10.3 106 268-391 115-227 (269)
180 PF04230 PS_pyruv_trans: Polys 94.9 1.5 3.2E-05 40.2 15.7 37 347-390 248-284 (286)
181 PLN02992 coniferyl-alcohol glu 94.8 0.93 2E-05 45.3 14.4 84 339-427 338-428 (481)
182 PLN02554 UDP-glycosyltransfera 94.7 1.2 2.5E-05 44.9 15.1 87 339-432 342-447 (481)
183 PF06258 Mito_fiss_Elm1: Mitoc 94.7 2 4.3E-05 40.3 15.5 121 258-392 135-259 (311)
184 PLN00164 glucosyltransferase; 93.9 2.9 6.2E-05 42.1 15.9 95 340-439 340-445 (480)
185 PLN02207 UDP-glycosyltransfera 93.8 1.2 2.7E-05 44.3 12.8 82 339-425 332-425 (468)
186 PLN02534 UDP-glycosyltransfera 93.6 3.2 7E-05 41.7 15.5 82 339-425 344-443 (491)
187 PF01975 SurE: Survival protei 93.2 0.3 6.4E-06 42.3 6.7 40 75-117 1-40 (196)
188 PF10087 DUF2325: Uncharacteri 93.0 0.44 9.5E-06 36.0 6.6 79 311-395 2-88 (97)
189 TIGR02201 heptsyl_trn_III lipo 92.4 2.6 5.7E-05 40.3 12.7 104 268-388 180-285 (344)
190 KOG1192 UDP-glucuronosyl and U 92.3 3.5 7.5E-05 41.8 14.1 94 339-439 335-435 (496)
191 KOG3349 Predicted glycosyltran 91.0 4.3 9.2E-05 33.0 10.0 99 270-388 4-106 (170)
192 PRK09739 hypothetical protein; 90.4 1.4 3E-05 38.5 7.8 42 72-113 1-43 (199)
193 PF06925 MGDG_synth: Monogalac 90.4 0.91 2E-05 38.4 6.5 88 141-238 80-168 (169)
194 COG0496 SurE Predicted acid ph 89.0 1.1 2.3E-05 40.1 5.9 40 75-118 1-40 (252)
195 KOG1021 Acetylglucosaminyltran 88.8 4.5 9.7E-05 40.5 10.9 95 348-449 335-434 (464)
196 PLN03015 UDP-glucosyl transfer 88.6 12 0.00026 37.4 13.5 80 341-425 337-425 (470)
197 COG1887 TagB Putative glycosyl 88.5 25 0.00055 34.2 15.8 180 221-429 163-356 (388)
198 PF00862 Sucrose_synth: Sucros 87.6 14 0.00029 36.7 12.6 35 149-187 400-434 (550)
199 TIGR02026 BchE magnesium-proto 87.5 3.1 6.8E-05 42.1 9.0 37 76-112 1-45 (497)
200 PF03016 Exostosin: Exostosin 87.3 0.51 1.1E-05 44.2 3.1 69 348-420 228-299 (302)
201 PF08288 PIGA: PIGA (GPI ancho 84.8 1.6 3.5E-05 31.7 3.8 47 140-188 40-86 (90)
202 PF01113 DapB_N: Dihydrodipico 83.0 3.8 8.2E-05 32.6 5.8 44 348-393 59-102 (124)
203 cd03146 GAT1_Peptidase_E Type 82.8 14 0.0003 32.5 9.9 86 307-392 30-124 (212)
204 PF03853 YjeF_N: YjeF-related 82.3 2 4.4E-05 36.3 4.2 80 74-156 25-105 (169)
205 PRK13940 glutamyl-tRNA reducta 81.2 32 0.00069 33.9 12.5 72 310-396 207-278 (414)
206 PRK06988 putative formyltransf 80.1 7.3 0.00016 36.6 7.5 78 74-158 2-85 (312)
207 cd05565 PTS_IIB_lactose PTS_II 79.2 4.6 9.9E-05 30.6 4.7 73 311-389 4-79 (99)
208 PRK01372 ddl D-alanine--D-alan 78.7 7.8 0.00017 36.3 7.4 42 72-113 2-45 (304)
209 TIGR00853 pts-lac PTS system, 78.5 3.3 7.2E-05 31.1 3.8 76 310-390 6-83 (95)
210 PRK10840 transcriptional regul 78.2 26 0.00056 30.7 10.2 111 308-425 3-125 (216)
211 PF03358 FMN_red: NADPH-depend 78.1 6.9 0.00015 32.2 6.1 40 75-114 1-41 (152)
212 PF03033 Glyco_transf_28: Glyc 77.8 3.3 7.1E-05 33.4 4.0 39 91-139 13-51 (139)
213 PRK00207 sulfur transfer compl 77.5 6 0.00013 31.6 5.2 39 75-113 1-41 (128)
214 PF10933 DUF2827: Protein of u 77.3 28 0.00061 33.0 10.1 308 87-449 18-352 (364)
215 PF04413 Glycos_transf_N: 3-De 76.7 13 0.00027 32.1 7.4 132 91-237 35-179 (186)
216 PRK05282 (alpha)-aspartyl dipe 76.5 29 0.00062 31.1 9.7 81 310-392 33-123 (233)
217 PF11071 DUF2872: Protein of u 76.2 18 0.0004 28.5 7.2 39 352-393 68-111 (141)
218 PF05686 Glyco_transf_90: Glyc 75.9 19 0.00041 35.2 9.2 86 375-462 230-319 (395)
219 PRK00676 hemA glutamyl-tRNA re 75.1 78 0.0017 30.1 14.1 137 307-463 173-321 (338)
220 PLN02166 dTDP-glucose 4,6-dehy 74.1 20 0.00043 35.7 9.0 34 73-112 119-152 (436)
221 PRK13934 stationary phase surv 73.8 8.2 0.00018 35.1 5.6 39 75-117 1-39 (266)
222 PRK05647 purN phosphoribosylgl 73.8 14 0.00031 32.1 7.0 74 74-158 1-88 (200)
223 cd05564 PTS_IIB_chitobiose_lic 73.0 7 0.00015 29.4 4.3 74 311-389 3-78 (96)
224 smart00672 CAP10 Putative lipo 72.9 14 0.0003 33.6 7.0 48 414-461 202-249 (256)
225 PF15201 Rod_cone_degen: Progr 72.3 9.2 0.0002 23.8 3.8 28 21-48 2-29 (54)
226 PRK10360 DNA-binding transcrip 71.6 43 0.00094 28.4 9.8 67 356-425 47-117 (196)
227 PHA03392 egt ecdysteroid UDP-g 71.4 6.1 0.00013 40.0 4.8 35 77-113 23-58 (507)
228 PF02844 GARS_N: Phosphoribosy 70.2 18 0.00038 27.4 5.8 69 75-158 1-70 (100)
229 COG2894 MinD Septum formation 70.1 20 0.00044 31.5 6.8 39 76-116 3-43 (272)
230 PRK06849 hypothetical protein; 69.6 11 0.00024 36.8 6.1 36 73-114 3-38 (389)
231 COG1519 KdtA 3-deoxy-D-manno-o 69.0 97 0.0021 30.2 11.8 102 268-389 48-153 (419)
232 PRK13931 stationary phase surv 67.9 19 0.00042 32.7 6.7 41 75-118 1-44 (261)
233 PRK06756 flavodoxin; Provision 67.3 12 0.00026 30.6 5.0 38 74-112 1-38 (148)
234 TIGR02069 cyanophycinase cyano 67.3 74 0.0016 28.8 10.4 102 283-393 11-127 (250)
235 PF08660 Alg14: Oligosaccharid 67.3 42 0.00091 28.3 8.3 30 87-116 8-39 (170)
236 PRK13932 stationary phase surv 67.2 9.8 0.00021 34.5 4.7 41 73-117 4-44 (257)
237 PRK00048 dihydrodipicolinate r 66.8 21 0.00046 32.5 6.9 60 348-409 52-116 (257)
238 PF02606 LpxK: Tetraacyldisacc 66.6 97 0.0021 29.4 11.4 39 77-116 37-77 (326)
239 PF00185 OTCace: Aspartate/orn 65.9 19 0.00041 30.0 5.9 36 74-114 2-37 (158)
240 COG1927 Mtd Coenzyme F420-depe 65.8 89 0.0019 27.0 13.5 118 272-424 6-128 (277)
241 cd03129 GAT1_Peptidase_E_like 65.6 58 0.0013 28.5 9.3 86 307-392 28-124 (210)
242 PF10093 DUF2331: Uncharacteri 65.5 96 0.0021 29.9 11.0 107 257-389 168-289 (374)
243 PF03401 TctC: Tripartite tric 65.3 92 0.002 28.7 10.9 145 271-438 79-244 (274)
244 PRK05562 precorrin-2 dehydroge 65.0 1E+02 0.0022 27.4 15.3 147 270-443 25-179 (223)
245 PF00070 Pyr_redox: Pyridine n 65.0 18 0.0004 25.8 5.0 48 90-137 8-58 (80)
246 COG4635 HemG Flavodoxin [Energ 64.6 13 0.00029 30.5 4.4 38 75-113 1-38 (175)
247 PF02951 GSH-S_N: Prokaryotic 64.4 17 0.00037 28.5 5.0 37 75-113 1-40 (119)
248 COG2204 AtoC Response regulato 63.9 87 0.0019 31.2 10.7 110 310-428 6-124 (464)
249 COG0512 PabA Anthranilate/para 63.6 15 0.00032 31.4 4.8 34 74-113 1-34 (191)
250 PLN02206 UDP-glucuronate decar 63.6 38 0.00083 33.7 8.5 34 73-112 118-151 (442)
251 PF02302 PTS_IIB: PTS system, 63.2 18 0.00038 26.6 4.8 54 311-365 3-56 (90)
252 PRK00170 azoreductase; Reviewe 62.8 17 0.00036 31.6 5.3 40 74-113 1-44 (201)
253 PRK00211 sulfur relay protein 62.7 18 0.0004 28.4 4.9 41 74-114 1-42 (119)
254 PRK10834 vancomycin high tempe 61.9 1.1E+02 0.0023 27.5 10.0 81 307-390 81-169 (239)
255 PRK13054 lipid kinase; Reviewe 61.9 20 0.00043 33.5 6.0 41 72-114 1-41 (300)
256 PF01408 GFO_IDH_MocA: Oxidore 61.7 54 0.0012 25.3 7.7 68 307-389 24-93 (120)
257 TIGR00288 conserved hypothetic 61.5 64 0.0014 26.9 8.0 67 283-364 89-156 (160)
258 KOG0780 Signal recognition par 61.3 1.6E+02 0.0035 28.5 13.4 164 275-459 159-341 (483)
259 COG0373 HemA Glutamyl-tRNA red 60.9 1.7E+02 0.0038 28.7 15.4 87 309-410 203-296 (414)
260 PRK10494 hypothetical protein; 60.7 85 0.0018 28.6 9.6 83 306-391 119-210 (259)
261 COG0716 FldA Flavodoxins [Ener 60.1 22 0.00047 29.3 5.2 38 74-112 1-38 (151)
262 COG0394 Wzb Protein-tyrosine-p 60.0 19 0.00041 29.2 4.7 81 73-158 1-84 (139)
263 TIGR01286 nifK nitrogenase mol 59.1 2.1E+02 0.0046 29.1 15.4 119 215-341 128-252 (515)
264 PRK13398 3-deoxy-7-phosphohept 58.8 1.5E+02 0.0032 27.2 11.6 105 272-390 28-142 (266)
265 COG0673 MviM Predicted dehydro 58.8 79 0.0017 29.9 9.7 67 309-389 30-98 (342)
266 TIGR01278 DPOR_BchB light-inde 58.7 2.2E+02 0.0047 29.1 14.2 75 309-388 159-239 (511)
267 PLN02657 3,8-divinyl protochlo 58.6 73 0.0016 31.1 9.4 36 72-113 58-93 (390)
268 PRK09271 flavodoxin; Provision 58.3 22 0.00048 29.6 5.0 36 75-111 1-36 (160)
269 PRK06395 phosphoribosylamine-- 57.8 31 0.00067 34.3 6.7 73 73-158 1-73 (435)
270 PF02441 Flavoprotein: Flavopr 57.7 25 0.00054 28.0 5.0 36 75-113 1-36 (129)
271 PRK00652 lpxK tetraacyldisacch 57.6 1.6E+02 0.0035 27.9 11.1 38 77-115 51-90 (325)
272 cd01967 Nitrogenase_MoFe_alpha 57.5 2E+02 0.0043 28.2 19.9 157 215-387 73-236 (406)
273 PF00148 Oxidored_nitro: Nitro 57.4 1.9E+02 0.0042 28.2 15.2 119 258-388 98-222 (398)
274 PRK07206 hypothetical protein; 57.4 58 0.0013 32.1 8.6 77 73-158 1-78 (416)
275 PRK08591 acetyl-CoA carboxylas 57.3 33 0.00071 34.3 6.9 76 74-158 2-82 (451)
276 PRK13234 nifH nitrogenase redu 57.2 21 0.00046 33.3 5.2 36 74-112 3-40 (295)
277 PRK06703 flavodoxin; Provision 57.1 22 0.00048 29.2 4.8 38 74-112 1-38 (151)
278 PF10087 DUF2325: Uncharacteri 57.0 46 0.001 24.9 6.2 24 87-110 6-29 (97)
279 PRK13396 3-deoxy-7-phosphohept 56.9 1.7E+02 0.0037 28.0 11.1 107 269-389 99-215 (352)
280 TIGR00460 fmt methionyl-tRNA f 56.7 43 0.00092 31.6 7.2 77 75-158 1-86 (313)
281 PRK00005 fmt methionyl-tRNA fo 56.4 45 0.00097 31.4 7.3 77 75-158 1-86 (309)
282 TIGR01283 nifE nitrogenase mol 56.3 2.2E+02 0.0048 28.5 19.4 143 230-387 122-273 (456)
283 PRK06851 hypothetical protein; 56.2 2E+02 0.0043 27.8 19.6 39 74-113 29-67 (367)
284 COG1553 DsrE Uncharacterized c 56.1 86 0.0019 24.7 7.3 75 75-157 1-79 (126)
285 PRK05568 flavodoxin; Provision 56.0 27 0.00059 28.2 5.2 38 75-113 2-39 (142)
286 PF02525 Flavodoxin_2: Flavodo 55.9 23 0.0005 30.7 5.0 40 75-114 1-43 (199)
287 TIGR00715 precor6x_red precorr 55.9 1.3E+02 0.0028 27.4 9.8 72 75-162 1-78 (256)
288 PRK03767 NAD(P)H:quinone oxido 55.9 23 0.00051 30.7 5.0 38 75-113 2-40 (200)
289 PLN00016 RNA-binding protein; 55.6 15 0.00033 35.7 4.1 40 73-114 51-90 (378)
290 PRK11780 isoprenoid biosynthes 55.1 34 0.00074 30.2 5.9 41 75-115 2-44 (217)
291 COG3414 SgaB Phosphotransferas 55.0 14 0.00031 27.5 2.9 55 310-365 4-58 (93)
292 PRK05920 aromatic acid decarbo 54.7 28 0.00061 30.4 5.1 38 73-114 2-40 (204)
293 PF00551 Formyl_trans_N: Formy 54.6 37 0.00079 29.0 5.9 27 75-106 1-27 (181)
294 PRK04175 rpl7ae 50S ribosomal 53.9 67 0.0015 25.4 6.8 78 283-377 33-111 (122)
295 PRK08125 bifunctional UDP-gluc 53.9 40 0.00086 35.7 7.2 77 75-158 1-83 (660)
296 PRK08305 spoVFB dipicolinate s 53.8 31 0.00067 29.9 5.2 38 73-114 4-43 (196)
297 TIGR01768 GGGP-family geranylg 53.6 38 0.00081 30.0 5.8 54 308-365 27-80 (223)
298 TIGR01007 eps_fam capsular exo 53.5 31 0.00068 30.0 5.4 39 75-113 17-55 (204)
299 COG1056 NadR Nicotinamide mono 53.3 1.3E+02 0.0028 25.4 8.6 64 271-345 4-76 (172)
300 PF00185 OTCace: Aspartate/orn 53.0 98 0.0021 25.7 8.0 78 270-365 2-82 (158)
301 PRK07200 aspartate/ornithine c 52.6 90 0.0019 30.5 8.7 41 74-114 187-228 (395)
302 TIGR00639 PurN phosphoribosylg 52.6 75 0.0016 27.4 7.4 73 75-158 1-87 (190)
303 COG1703 ArgK Putative periplas 52.6 74 0.0016 29.6 7.5 76 88-163 63-156 (323)
304 PRK10569 NAD(P)H-dependent FMN 52.5 37 0.00081 29.3 5.6 39 75-113 1-40 (191)
305 PF02310 B12-binding: B12 bind 52.5 1.1E+02 0.0023 23.7 8.0 45 91-158 15-59 (121)
306 COG0062 Uncharacterized conser 52.3 72 0.0016 27.8 7.2 39 74-115 49-87 (203)
307 PRK08462 biotin carboxylase; V 51.9 48 0.001 33.0 7.1 77 74-158 4-84 (445)
308 PRK02910 light-independent pro 51.9 2.8E+02 0.0061 28.3 14.6 76 308-388 158-239 (519)
309 cd01972 Nitrogenase_VnfE_like 51.9 2.5E+02 0.0054 27.8 19.2 160 215-389 75-244 (426)
310 TIGR02622 CDP_4_6_dhtase CDP-g 51.8 42 0.0009 32.1 6.5 36 72-113 2-37 (349)
311 TIGR00087 surE 5'/3'-nucleotid 51.8 25 0.00055 31.7 4.5 39 75-117 1-39 (244)
312 PRK07178 pyruvate carboxylase 51.8 55 0.0012 32.9 7.5 77 74-157 2-80 (472)
313 COG2910 Putative NADH-flavin r 51.7 31 0.00068 29.4 4.6 34 75-114 1-34 (211)
314 PF13241 NAD_binding_7: Putati 51.7 79 0.0017 23.9 6.7 48 349-397 53-100 (103)
315 PRK14805 ornithine carbamoyltr 51.4 64 0.0014 30.2 7.3 37 73-115 146-182 (302)
316 PF00289 CPSase_L_chain: Carba 51.3 33 0.00071 26.5 4.6 34 74-114 2-35 (110)
317 COG1663 LpxK Tetraacyldisaccha 51.2 2.2E+02 0.0048 27.0 11.2 39 77-116 49-89 (336)
318 COG4370 Uncharacterized protei 51.2 33 0.00071 31.7 5.0 163 270-454 226-407 (412)
319 TIGR01761 thiaz-red thiazoliny 51.1 1.1E+02 0.0024 29.3 9.0 91 270-389 3-97 (343)
320 COG1671 Uncharacterized protei 51.1 76 0.0016 25.9 6.6 70 324-397 13-82 (150)
321 PF04321 RmlD_sub_bind: RmlD s 51.0 27 0.00059 32.4 4.9 58 75-157 1-58 (286)
322 PRK02255 putrescine carbamoylt 50.7 83 0.0018 30.0 8.0 36 74-115 154-189 (338)
323 PRK05583 ribosomal protein L7A 50.7 94 0.002 23.7 6.9 78 284-379 21-98 (104)
324 TIGR01012 Sa_S2_E_A ribosomal 50.6 94 0.002 26.9 7.6 123 282-425 43-169 (196)
325 PRK10310 PTS system galactitol 50.6 25 0.00054 26.3 3.7 55 310-365 5-59 (94)
326 COG4537 ComGC Competence prote 50.5 20 0.00043 26.8 2.9 24 15-38 12-37 (107)
327 cd01965 Nitrogenase_MoFe_beta_ 50.1 2.7E+02 0.0058 27.6 20.9 147 230-389 82-252 (428)
328 PRK07313 phosphopantothenoylcy 50.1 37 0.0008 29.0 5.1 37 74-114 1-38 (182)
329 TIGR00514 accC acetyl-CoA carb 49.9 42 0.00092 33.5 6.3 33 74-113 2-34 (449)
330 PRK11914 diacylglycerol kinase 49.8 49 0.0011 31.0 6.4 46 69-114 3-49 (306)
331 TIGR00658 orni_carb_tr ornithi 49.4 69 0.0015 30.0 7.2 37 73-115 147-183 (304)
332 PTZ00254 40S ribosomal protein 49.3 96 0.0021 28.0 7.6 124 281-424 51-178 (249)
333 PF04127 DFP: DNA / pantothena 49.3 1.3E+02 0.0028 25.8 8.3 24 91-114 30-53 (185)
334 PRK13556 azoreductase; Provisi 49.0 40 0.00087 29.5 5.4 41 74-114 1-46 (208)
335 PRK09273 hypothetical protein; 48.7 25 0.00055 30.5 3.8 39 75-113 1-39 (211)
336 PRK09004 FMN-binding protein M 48.6 34 0.00073 28.0 4.5 36 75-111 2-37 (146)
337 PRK05569 flavodoxin; Provision 48.3 41 0.00089 27.1 5.0 38 75-113 2-39 (141)
338 PRK14569 D-alanyl-alanine synt 48.1 36 0.00078 31.7 5.2 41 72-112 1-43 (296)
339 PF00389 2-Hacid_dh: D-isomer 48.0 1.4E+02 0.003 23.7 9.2 87 327-420 10-101 (133)
340 PF02635 DrsE: DsrE/DsrF-like 47.9 48 0.001 25.6 5.3 40 75-114 1-44 (122)
341 PRK14982 acyl-ACP reductase; P 47.7 2.5E+02 0.0054 26.9 10.6 106 349-463 208-331 (340)
342 PRK13933 stationary phase surv 47.7 34 0.00074 31.0 4.7 39 75-117 1-39 (253)
343 PRK00045 hemA glutamyl-tRNA re 47.7 2.9E+02 0.0063 27.3 12.5 74 310-396 208-285 (423)
344 PRK09590 celB cellobiose phosp 47.6 46 0.00099 25.5 4.7 75 310-389 4-82 (104)
345 COG4567 Response regulator con 47.4 1.1E+02 0.0024 25.2 6.9 107 307-423 8-124 (182)
346 COG2120 Uncharacterized protei 47.4 91 0.002 28.0 7.5 40 72-116 8-50 (237)
347 COG1763 MobB Molybdopterin-gua 46.9 45 0.00098 27.8 5.0 38 74-112 1-38 (161)
348 PF06564 YhjQ: YhjQ protein; 46.9 41 0.00088 30.3 5.0 36 75-113 2-39 (243)
349 KOG0780 Signal recognition par 46.6 77 0.0017 30.5 6.8 79 77-159 104-192 (483)
350 cd01971 Nitrogenase_VnfN_like 46.6 3E+02 0.0066 27.2 18.7 100 282-389 132-238 (427)
351 TIGR00853 pts-lac PTS system, 46.4 55 0.0012 24.5 5.0 39 73-113 2-40 (95)
352 COG1091 RfbD dTDP-4-dehydrorha 46.3 49 0.0011 30.4 5.5 57 75-157 1-57 (281)
353 PF09949 DUF2183: Uncharacteri 46.2 39 0.00084 25.6 4.1 29 305-336 61-89 (100)
354 PF13788 DUF4180: Domain of un 45.9 54 0.0012 25.4 4.9 42 307-350 68-109 (113)
355 KOG2884 26S proteasome regulat 45.7 2.1E+02 0.0045 25.1 9.7 102 311-425 111-228 (259)
356 PF11997 DUF3492: Domain of un 45.2 31 0.00068 31.6 4.2 40 75-114 1-43 (268)
357 PRK08105 flavodoxin; Provision 45.1 39 0.00085 27.7 4.4 36 76-112 3-38 (149)
358 PRK04284 ornithine carbamoyltr 45.1 96 0.0021 29.5 7.5 38 73-115 154-191 (332)
359 COG0151 PurD Phosphoribosylami 45.0 2.4E+02 0.0051 27.7 9.9 70 75-158 1-71 (428)
360 PF00532 Peripla_BP_1: Peripla 44.9 2.5E+02 0.0054 25.8 16.3 205 75-341 2-211 (279)
361 COG3181 Uncharacterized protei 44.9 2.5E+02 0.0054 26.5 9.9 148 275-439 127-288 (319)
362 PF10740 DUF2529: Protein of u 44.6 56 0.0012 27.4 5.1 33 75-111 83-115 (172)
363 COG0223 Fmt Methionyl-tRNA for 44.6 85 0.0019 29.3 6.9 78 74-158 1-87 (307)
364 PF01993 MTD: methylene-5,6,7, 44.4 2.1E+02 0.0046 25.5 8.7 95 306-424 28-127 (276)
365 TIGR03012 sulf_tusD_dsrE sulfu 44.2 51 0.0011 26.2 4.8 38 76-113 1-40 (127)
366 PF07592 DDE_Tnp_ISAZ013: Rhod 44.1 1.9E+02 0.0041 27.1 8.9 71 272-346 149-224 (311)
367 COG2984 ABC-type uncharacteriz 44.0 1E+02 0.0022 28.8 7.2 82 307-391 157-248 (322)
368 PRK10427 putative PTS system f 44.0 58 0.0012 25.4 4.9 39 74-113 2-42 (114)
369 PRK13789 phosphoribosylamine-- 43.9 96 0.0021 30.7 7.7 74 73-158 3-76 (426)
370 PLN02929 NADH kinase 43.8 1.3E+02 0.0028 28.2 7.9 93 325-426 36-137 (301)
371 PRK01355 azoreductase; Reviewe 43.8 59 0.0013 28.2 5.6 40 74-113 1-45 (199)
372 PRK13181 hisH imidazole glycer 43.6 75 0.0016 27.5 6.2 62 324-391 11-81 (199)
373 COG2949 SanA Uncharacterized m 43.5 1.7E+02 0.0037 25.5 7.8 98 286-393 79-184 (235)
374 PRK13397 3-deoxy-7-phosphohept 43.5 2.5E+02 0.0055 25.4 10.6 95 283-390 26-130 (250)
375 PRK13230 nitrogenase reductase 43.4 43 0.00094 30.8 5.0 35 75-113 2-38 (279)
376 TIGR03316 ygeW probable carbam 43.4 1.4E+02 0.003 28.7 8.4 83 74-158 170-253 (357)
377 PRK13185 chlL protochlorophyll 43.3 44 0.00096 30.6 5.0 35 76-113 3-39 (270)
378 PRK01966 ddl D-alanyl-alanine 42.9 43 0.00093 31.9 5.0 42 72-113 1-44 (333)
379 TIGR01754 flav_RNR ribonucleot 42.8 50 0.0011 26.7 4.7 34 75-109 1-34 (140)
380 PF00072 Response_reg: Respons 42.7 1.2E+02 0.0025 22.7 6.7 94 324-421 10-112 (112)
381 PF00885 DMRL_synthase: 6,7-di 42.5 60 0.0013 26.5 5.0 67 72-158 1-70 (144)
382 TIGR03837 efp_adjacent_2 conse 42.4 3.2E+02 0.007 26.3 11.4 107 257-389 167-287 (371)
383 cd05312 NAD_bind_1_malic_enz N 42.0 2.8E+02 0.0062 25.6 11.2 39 349-388 96-138 (279)
384 TIGR02853 spore_dpaA dipicolin 41.9 1.7E+02 0.0038 27.1 8.6 26 88-113 8-33 (287)
385 PF10649 DUF2478: Protein of u 41.9 39 0.00084 28.1 3.8 34 356-389 93-130 (159)
386 CHL00073 chlN photochlorophyll 41.6 3.8E+02 0.0082 26.9 17.7 146 229-391 97-270 (457)
387 cd01020 TroA_b Metal binding p 41.5 1.3E+02 0.0029 27.4 7.8 88 351-443 47-136 (264)
388 PRK07308 flavodoxin; Validated 41.5 55 0.0012 26.6 4.8 36 76-112 3-38 (146)
389 COG0111 SerA Phosphoglycerate 41.3 2.8E+02 0.0061 26.3 10.0 76 309-393 143-237 (324)
390 TIGR00075 hypD hydrogenase exp 41.0 1.9E+02 0.0042 27.7 8.6 84 305-390 133-226 (369)
391 KOG2764 Putative transcription 40.9 45 0.00098 29.4 4.1 71 74-159 5-76 (247)
392 CHL00072 chlL photochlorophyll 40.8 46 0.001 31.0 4.7 35 75-113 1-37 (290)
393 TIGR01281 DPOR_bchL light-inde 40.5 48 0.001 30.3 4.8 35 75-113 1-37 (268)
394 PRK13935 stationary phase surv 40.2 47 0.001 30.1 4.4 39 75-117 1-39 (253)
395 PF02630 SCO1-SenC: SCO1/SenC; 40.2 2.3E+02 0.0049 23.9 8.5 87 268-361 51-138 (174)
396 PRK00994 F420-dependent methyl 40.1 2.7E+02 0.0059 24.8 12.8 117 273-424 7-128 (277)
397 TIGR01361 DAHP_synth_Bsub phos 40.0 2.7E+02 0.006 25.4 9.4 63 324-390 77-140 (260)
398 PF03308 ArgK: ArgK protein; 40.0 1.2E+02 0.0026 27.6 6.8 74 90-163 43-134 (266)
399 PRK10430 DNA-binding transcrip 39.9 2.3E+02 0.005 25.1 9.1 64 357-423 50-120 (239)
400 PF13614 AAA_31: AAA domain; P 39.9 71 0.0015 26.1 5.4 36 77-113 3-38 (157)
401 PLN02778 3,5-epimerase/4-reduc 39.7 1.4E+02 0.003 27.9 7.7 32 73-110 8-39 (298)
402 PF13689 DUF4154: Domain of un 39.4 2.1E+02 0.0045 23.3 8.9 69 307-387 26-96 (145)
403 cd02040 NifH NifH gene encodes 39.2 49 0.0011 30.2 4.6 28 86-113 9-38 (270)
404 cd02032 Bchl_like This family 39.0 50 0.0011 30.1 4.7 35 75-113 1-37 (267)
405 PRK03515 ornithine carbamoyltr 38.9 1.3E+02 0.0029 28.6 7.4 78 74-158 156-233 (336)
406 COG4565 CitB Response regulato 38.9 2.6E+02 0.0056 24.6 8.3 30 394-425 90-119 (224)
407 PRK12833 acetyl-CoA carboxylas 38.9 1.2E+02 0.0026 30.5 7.6 76 74-158 5-85 (467)
408 PLN03050 pyridoxine (pyridoxam 38.9 65 0.0014 29.1 5.1 34 75-111 61-94 (246)
409 PRK04155 chaperone protein Hch 38.8 1.4E+02 0.0031 27.6 7.5 41 74-114 49-100 (287)
410 PRK05447 1-deoxy-D-xylulose 5- 38.8 1.5E+02 0.0032 28.8 7.7 86 281-389 35-122 (385)
411 COG4088 Predicted nucleotide k 38.8 37 0.00081 29.6 3.3 36 77-113 3-38 (261)
412 PRK09288 purT phosphoribosylgl 38.8 1.2E+02 0.0026 29.6 7.5 72 74-158 12-83 (395)
413 TIGR03677 rpl7ae 50S ribosomal 38.7 1.7E+02 0.0037 22.9 6.8 78 283-377 29-107 (117)
414 PRK00346 surE 5'(3')-nucleotid 38.3 57 0.0012 29.5 4.7 39 75-117 1-39 (250)
415 PRK13302 putative L-aspartate 38.2 2.7E+02 0.0058 25.6 9.2 71 307-391 30-100 (271)
416 PF00852 Glyco_transf_10: Glyc 38.2 44 0.00094 32.1 4.2 56 374-433 246-305 (349)
417 PRK05579 bifunctional phosphop 38.0 64 0.0014 31.6 5.3 39 72-114 4-43 (399)
418 cd01981 Pchlide_reductase_B Pc 38.0 4.1E+02 0.0089 26.3 14.8 75 309-388 163-243 (430)
419 PLN02572 UDP-sulfoquinovose sy 37.9 70 0.0015 31.8 5.8 33 73-111 46-78 (442)
420 cd02071 MM_CoA_mut_B12_BD meth 37.6 1.6E+02 0.0035 23.0 6.8 13 231-243 27-39 (122)
421 PRK10499 PTS system N,N'-diace 37.5 70 0.0015 24.5 4.4 36 72-111 1-38 (106)
422 PRK06895 putative anthranilate 37.5 54 0.0012 28.2 4.3 33 75-113 2-34 (190)
423 PRK06029 3-octaprenyl-4-hydrox 37.4 69 0.0015 27.5 4.8 38 74-115 1-40 (185)
424 PRK01713 ornithine carbamoyltr 37.2 1.4E+02 0.0031 28.4 7.4 38 73-115 155-192 (334)
425 PRK13235 nifH nitrogenase redu 37.1 57 0.0012 29.9 4.7 35 75-113 2-38 (274)
426 PRK07714 hypothetical protein; 37.1 1.8E+02 0.0039 21.9 6.6 77 284-378 22-98 (100)
427 PRK13530 arsenate reductase; P 37.0 1.3E+02 0.0027 24.2 6.1 78 72-158 1-82 (133)
428 PF02254 TrkA_N: TrkA-N domain 37.0 1.6E+02 0.0034 22.5 6.6 63 88-159 5-71 (116)
429 PRK02645 ppnK inorganic polyph 36.9 60 0.0013 30.4 4.8 40 72-112 1-40 (305)
430 PLN02928 oxidoreductase family 36.9 2.8E+02 0.0061 26.6 9.4 47 347-393 217-266 (347)
431 PRK12595 bifunctional 3-deoxy- 36.9 4E+02 0.0086 25.7 11.5 94 284-390 130-233 (360)
432 TIGR01470 cysG_Nterm siroheme 36.8 1.4E+02 0.003 26.1 6.8 130 88-226 16-145 (205)
433 PRK03094 hypothetical protein; 36.8 22 0.00047 25.6 1.4 23 90-112 7-29 (80)
434 PRK12745 3-ketoacyl-(acyl-carr 36.7 1E+02 0.0023 27.5 6.4 23 91-113 13-35 (256)
435 PF01012 ETF: Electron transfe 36.6 2.5E+02 0.0053 23.3 8.8 90 286-388 18-120 (164)
436 TIGR01769 GGGP geranylgeranylg 36.5 1.5E+02 0.0033 25.8 6.9 54 308-365 24-78 (205)
437 PF00308 Bac_DnaA: Bacterial d 36.4 1.3E+02 0.0027 26.7 6.5 111 348-462 89-213 (219)
438 cd01968 Nitrogenase_NifE_I Nit 36.2 4.3E+02 0.0093 26.0 17.5 156 216-387 73-234 (410)
439 PRK06111 acetyl-CoA carboxylas 36.2 1.2E+02 0.0025 30.3 7.1 34 73-113 1-34 (450)
440 PRK14478 nitrogenase molybdenu 36.2 4.7E+02 0.01 26.4 17.6 141 230-387 120-267 (475)
441 PRK12562 ornithine carbamoyltr 36.1 1.6E+02 0.0035 28.0 7.5 37 74-115 156-192 (334)
442 cd00762 NAD_bind_malic_enz NAD 36.0 3.4E+02 0.0073 24.7 10.1 39 349-388 97-139 (254)
443 PRK00994 F420-dependent methyl 35.9 1.7E+02 0.0037 26.1 6.8 71 74-163 2-73 (277)
444 PRK09483 response regulator; P 35.8 2.8E+02 0.0061 23.7 9.9 66 357-425 48-120 (217)
445 TIGR03010 sulf_tusC_dsrF sulfu 35.6 72 0.0016 24.8 4.4 39 76-114 1-40 (116)
446 PF03949 Malic_M: Malic enzyme 35.3 3.1E+02 0.0066 25.0 8.7 78 305-388 22-139 (255)
447 TIGR03029 EpsG chain length de 35.2 90 0.002 28.6 5.7 39 74-112 102-140 (274)
448 PRK01906 tetraacyldisaccharide 35.2 2.2E+02 0.0047 27.2 8.2 38 77-115 58-97 (338)
449 cd01979 Pchlide_reductase_N Pc 35.1 4.4E+02 0.0095 25.8 16.2 140 230-390 88-231 (396)
450 TIGR00036 dapB dihydrodipicoli 35.1 2.2E+02 0.0049 26.0 8.2 42 348-391 60-101 (266)
451 PRK11104 hemG protoporphyrinog 35.0 68 0.0015 27.2 4.5 36 75-112 1-36 (177)
452 COG3563 KpsC Capsule polysacch 35.0 1.6E+02 0.0035 29.2 7.2 50 334-391 203-253 (671)
453 TIGR01832 kduD 2-deoxy-D-gluco 35.0 98 0.0021 27.6 5.9 33 74-112 5-37 (248)
454 PRK10481 hypothetical protein; 34.8 2.3E+02 0.005 25.2 7.7 34 355-390 181-214 (224)
455 PRK12862 malic enzyme; Reviewe 34.8 4.6E+02 0.01 28.3 11.3 76 305-388 190-290 (763)
456 PRK04523 N-acetylornithine car 34.2 2.3E+02 0.0051 27.0 8.3 39 74-114 169-210 (335)
457 PRK00779 ornithine carbamoyltr 34.2 2.1E+02 0.0045 26.9 7.8 37 73-115 151-187 (304)
458 COG0482 TrmU Predicted tRNA(5- 34.0 1.8E+02 0.0039 27.8 7.3 35 72-112 1-35 (356)
459 KOG3022 Predicted ATPase, nucl 33.8 1.6E+02 0.0036 27.0 6.6 37 75-113 47-85 (300)
460 PF05014 Nuc_deoxyrib_tr: Nucl 33.7 56 0.0012 25.2 3.5 38 352-390 57-97 (113)
461 PRK13982 bifunctional SbtC-lik 33.6 1.6E+02 0.0035 29.5 7.3 39 72-114 68-107 (475)
462 PRK09590 celB cellobiose phosp 33.3 86 0.0019 24.0 4.3 38 74-113 1-38 (104)
463 PLN02695 GDP-D-mannose-3',5'-e 33.2 73 0.0016 30.8 4.9 35 73-113 20-54 (370)
464 PRK06932 glycerate dehydrogena 33.1 1.9E+02 0.0042 27.2 7.6 77 308-393 147-237 (314)
465 PRK13232 nifH nitrogenase redu 32.9 65 0.0014 29.5 4.3 35 75-113 2-38 (273)
466 PF02826 2-Hacid_dh_C: D-isome 32.8 2.6E+02 0.0056 23.6 7.7 44 348-393 83-131 (178)
467 PRK04169 geranylgeranylglycery 32.8 1.7E+02 0.0036 26.2 6.6 74 276-365 11-85 (232)
468 PRK10299 PhoPQ regulatory prot 32.7 57 0.0012 20.5 2.5 23 14-36 2-24 (47)
469 PF04413 Glycos_transf_N: 3-De 32.6 58 0.0012 28.0 3.6 100 270-389 22-125 (186)
470 COG0655 WrbA Multimeric flavod 32.5 1.1E+02 0.0024 26.7 5.5 40 75-114 1-41 (207)
471 PRK10017 colanic acid biosynth 32.5 4.4E+02 0.0095 26.2 10.2 44 348-391 109-157 (426)
472 TIGR00670 asp_carb_tr aspartat 32.3 2.5E+02 0.0054 26.3 8.0 39 73-115 149-187 (301)
473 TIGR00162 conserved hypothetic 32.3 3.3E+02 0.0071 23.4 10.9 75 340-425 67-142 (188)
474 PRK02102 ornithine carbamoyltr 32.1 2.2E+02 0.0047 27.1 7.6 38 73-115 154-191 (331)
475 COG1618 Predicted nucleotide k 32.1 77 0.0017 26.5 4.0 75 349-426 93-177 (179)
476 PRK05993 short chain dehydroge 32.1 80 0.0017 28.9 4.8 23 91-113 15-37 (277)
477 TIGR02113 coaC_strep phosphopa 32.1 1E+02 0.0022 26.2 5.0 24 91-114 14-37 (177)
478 CHL00175 minD septum-site dete 32.1 1E+02 0.0023 28.3 5.6 40 74-113 14-53 (281)
479 PF12146 Hydrolase_4: Putative 32.0 1.5E+02 0.0032 21.2 5.2 37 75-113 16-52 (79)
480 cd03145 GAT1_cyanophycinase Ty 31.6 3.6E+02 0.0078 23.7 9.9 85 308-393 29-128 (217)
481 PRK10310 PTS system galactitol 31.6 1.1E+02 0.0024 22.8 4.6 34 74-111 2-38 (94)
482 TIGR01380 glut_syn glutathione 31.6 62 0.0013 30.5 4.0 38 75-114 1-41 (312)
483 PF11238 DUF3039: Protein of u 31.5 38 0.00082 22.5 1.7 15 374-388 16-30 (58)
484 COG1692 Calcineurin-like phosp 31.1 4E+02 0.0086 24.1 8.5 85 272-366 2-91 (266)
485 COG1440 CelA Phosphotransferas 31.1 1.7E+02 0.0038 22.1 5.3 73 311-389 5-80 (102)
486 PRK08642 fabG 3-ketoacyl-(acyl 31.1 88 0.0019 27.9 4.9 21 92-112 17-37 (253)
487 TIGR03018 pepcterm_TyrKin exop 31.1 1.3E+02 0.0028 26.2 5.7 39 75-113 35-74 (207)
488 PF00201 UDPGT: UDP-glucoronos 31.0 20 0.00044 36.3 0.7 22 91-112 14-35 (500)
489 KOG2648 Diphthamide biosynthes 30.9 1E+02 0.0022 30.3 5.2 53 312-365 271-326 (453)
490 COG1440 CelA Phosphotransferas 30.8 1.4E+02 0.0029 22.7 4.7 37 74-114 1-39 (102)
491 PRK12767 carbamoyl phosphate s 30.7 1.7E+02 0.0036 27.5 6.9 32 74-113 1-34 (326)
492 PRK06719 precorrin-2 dehydroge 30.7 63 0.0014 26.8 3.5 32 74-112 13-44 (157)
493 COG0003 ArsA Predicted ATPase 30.6 3.2E+02 0.007 25.8 8.5 36 75-113 2-39 (322)
494 PF01370 Epimerase: NAD depend 30.6 84 0.0018 27.6 4.6 29 87-115 5-33 (236)
495 PLN02240 UDP-glucose 4-epimera 30.6 87 0.0019 29.8 5.0 35 72-112 3-37 (352)
496 TIGR00725 conserved hypothetic 30.5 94 0.002 25.9 4.5 36 74-111 1-36 (159)
497 PRK04020 rps2P 30S ribosomal p 30.5 3.7E+02 0.008 23.5 12.1 146 282-454 49-198 (204)
498 PRK13761 hypothetical protein; 30.5 3.9E+02 0.0084 23.7 8.9 96 354-463 148-244 (248)
499 KOG4252 GTP-binding protein [S 30.4 2.6E+02 0.0057 23.7 6.8 22 441-462 163-184 (246)
500 PRK05565 fabG 3-ketoacyl-(acyl 30.2 1.3E+02 0.0029 26.5 5.9 80 72-157 3-90 (247)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.9e-45 Score=356.71 Aligned_cols=355 Identities=18% Similarity=0.200 Sum_probs=266.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee-----------hhcHH
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS-----------AKGEK 143 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 143 (474)
.||+++.+.+..||+++++.+|+++|.+.|+++.+++...... +...+...++.++. ...+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSA-------FRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCCh-------hHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 5799999999999999999999999999999998888543221 11222222332221 22344
Q ss_pred HHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-----hhhhh-hc-ccccccccccccccHHH
Q 011954 144 AINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-----KLEYV-KH-LPFVAGAMIDSYTTAEY 216 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-----~~~~~-~~-~~~~~~~~~~s~~~~~~ 216 (474)
.+.+..+||+||+|+............... +..+++.|....... ...+. +. .+..+.+++.|. .
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~----~ 146 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAALAGV----PARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSR----D 146 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHhcCC----CeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCH----H
Confidence 556678999999997533221111111111 123344443211110 00111 11 123344444444 4
Q ss_pred HHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHH
Q 011954 217 WKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESL 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~ 296 (474)
..+.+.+.++++..++.+||||+|.+.|.+.... +...++....++++++++++||+.+.||++.+++|+.++.
T Consensus 147 ~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 147 LEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred HHHHHHHhcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 4444555677888899999999999888654321 1222333334567889999999999999999999999887
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
+...+ ..++++|+++|+|+ ..+.+++.++++++.+++.|+|+.+++.++|+.||++|+||. .||||++++
T Consensus 221 ~~~~~---~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~l 290 (374)
T TIGR03088 221 RQLPE---GAERLRLVIVGDGP-----ARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTIL 290 (374)
T ss_pred HhCcc---cccceEEEEecCCc-----hHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHH
Confidence 64321 12479999999986 678899999999999999999999999999999999999998 899999999
Q ss_pred HHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011954 377 EAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIAL 456 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 456 (474)
|||+||+|||+|+.||..|++.++.+|++++++| +++++++|.+++++++.+.++++++++++.++|||+.++++|++
T Consensus 291 EAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 368 (374)
T TIGR03088 291 EAMASGLPVIATAVGGNPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAG 368 (374)
T ss_pred HHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 011954 457 VLREVL 462 (474)
Q Consensus 457 ~~~~~~ 462 (474)
+|++++
T Consensus 369 ~y~~~~ 374 (374)
T TIGR03088 369 LYDQLL 374 (374)
T ss_pred HHHHhC
Confidence 998863
No 2
>PLN02316 synthase/transferase
Probab=100.00 E-value=7.4e-44 Score=366.39 Aligned_cols=388 Identities=14% Similarity=0.123 Sum_probs=279.8
Q ss_pred ccccccccCCCCcccCCCcccccccCEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhc
Q 011954 50 KTTTTATHFNSDEEKASNPLNFMKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSL 125 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~ 125 (474)
.+.+.+.+.......+... ..+|||++|+.+..| ||...++..|+++|++.||+|.|+++.++.........+
T Consensus 566 yDn~~~~dyh~~v~g~~~~---~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~ 642 (1036)
T PLN02316 566 FDNRNGLDYHIPVFGGIAK---EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDL 642 (1036)
T ss_pred cCCCCCcCCcccccCCCCC---CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccc
Confidence 3444444444443332222 236999999988655 888999999999999999999999987654211100000
Q ss_pred cc--c------------hhccceeeeehh-------------------c-------HHHHh--hhcCCCEEEEcccchhh
Q 011954 126 EH--K------------MLDRGVQVLSAK-------------------G-------EKAIN--TALNADLVVLNTAVAGK 163 (474)
Q Consensus 126 ~~--~------------~~~~~~~~~~~~-------------------~-------~~~~~--~~~~~DiV~~~~~~~~~ 163 (474)
.. . ....|+.++... + ...+. ...+|||||+|+..++.
T Consensus 643 ~~~~~~~~~~~~~~v~~~~~~GV~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~tal 722 (1036)
T PLN02316 643 HYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAP 722 (1036)
T ss_pred eEEEEeccCCEEEEEEEEEECCcEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHH
Confidence 00 0 000122221100 0 00111 12589999999865544
Q ss_pred HHhHHhhhcc---cccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCC--CCCeEEEeCC
Q 011954 164 WLDGVLKDKV---SQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIR--MPETYVVHLG 238 (474)
Q Consensus 164 ~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~ki~vi~ng 238 (474)
... +++... .....+++.++|+... ........+...+.++++|....+.+.. ...+. ..++.+|+||
T Consensus 723 va~-llk~~~~~~~~~~~p~V~TiHnl~~--~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NG 795 (1036)
T PLN02316 723 VAW-LFKDHYAHYGLSKARVVFTIHNLEF--GANHIGKAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNG 795 (1036)
T ss_pred HHH-HHHHhhhhhccCCCCEEEEeCCccc--chhHHHHHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECC
Confidence 322 222211 1123589999997632 1122334456777777777776655443 22333 4789999999
Q ss_pred CCccccchhhhh------------HHHHHhHHHHHHhcCCCC-CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccC
Q 011954 239 NSKDLMDIAEDS------------VARRVLREHVRESLGVRD-DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQ 305 (474)
Q Consensus 239 vd~~~~~~~~~~------------~~~~~~~~~~r~~~~~~~-~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~ 305 (474)
||.+.|.|..+. ..+...+..+++++|++. +.++|+++||+.++||+++|++|+.++.+
T Consensus 796 ID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~-------- 867 (1036)
T PLN02316 796 IDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE-------- 867 (1036)
T ss_pred ccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--------
Confidence 999988765321 112234567899999974 67899999999999999999999998865
Q ss_pred CCcEEEEEEcCCCCcCchHHHHHHHHHHHcCC--CCeEEEecCCCCh--HHHHhcCCEEEEcCCCCCCCCchHHHHHHhc
Q 011954 306 VPSMHAVVVGSDMNAQTKFETELRNFVAEKKI--QDHVHFVNKTLTV--SPYLASIDVLVQNSQARGECFGRITIEAMAF 381 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~--~~~~~~adv~v~ps~~~~E~~~~~~~EAma~ 381 (474)
.+++|+|+|+|+.. .+...++++++++++ +++|.|.|..++. ..+|+.||+||+||+ .|+||++++|||+|
T Consensus 868 -~~~qlVIvG~Gpd~--~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~ 942 (1036)
T PLN02316 868 -RNGQVVLLGSAPDP--RIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRY 942 (1036)
T ss_pred -cCcEEEEEeCCCCH--HHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHc
Confidence 57999999998632 357889999998876 5789998865443 479999999999999 99999999999999
Q ss_pred CCCEEEcCCCCcceeeeeC-------------CceeeecCCCCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCH
Q 011954 382 QLPVLGTAAGGTMEIVVNG-------------TTGLLHPTGKEGVTPLANNIVKLATH-VERRLTMGKKGYERVKDRFLE 447 (474)
Q Consensus 382 G~PvI~s~~~g~~e~v~~~-------------~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~~~~~~~~~fs~ 447 (474)
|+|+|++++||++|+|.++ .+|+++++.| +++|+++|.+++.+ ++....+++.+++.+.+.|||
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW 1020 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSW 1020 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCH
Confidence 9999999999999999874 6899999999 99999999999986 466777889999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011954 448 HHMSQRIALVLREVL 462 (474)
Q Consensus 448 ~~~~~~~~~~~~~~~ 462 (474)
+.++++|+++|+++.
T Consensus 1021 ~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 1021 NRPALDYMELYHSAR 1035 (1036)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=6.8e-44 Score=352.75 Aligned_cols=371 Identities=20% Similarity=0.180 Sum_probs=268.9
Q ss_pred cccCEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhh-----hhcccch---------hccc
Q 011954 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVI-----YSLEHKM---------LDRG 133 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~---------~~~~ 133 (474)
|++|||||++.+..| ||..-++..|.++|+++||+|.|+.+.++.-..... ..+...+ ...+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 568999999999655 888999999999999999999999987654321100 0000000 0011
Q ss_pred eeeeeh-----------------------h--cHH-------HHh----hhcCCCEEEEcccchhhHHhHHhhhcccccc
Q 011954 134 VQVLSA-----------------------K--GEK-------AIN----TALNADLVVLNTAVAGKWLDGVLKDKVSQVL 177 (474)
Q Consensus 134 ~~~~~~-----------------------~--~~~-------~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (474)
+.++-. . ++- .+. ...+|||||+|+..++.....+ ... ....
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l-~~~-~~~~ 158 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYL-HYS-GRPA 158 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHH-HhC-CCCC
Confidence 211100 0 000 011 1368999999986655543322 211 1123
Q ss_pred cceeeeeecccccc-chh------------------h-------hhhcccccccccccccccHHHHHHh-----HHHHhc
Q 011954 178 PKVLWWIHEMRGHY-FKL------------------E-------YVKHLPFVAGAMIDSYTTAEYWKNR-----TRERLG 226 (474)
Q Consensus 178 ~~~v~~~h~~~~~~-~~~------------------~-------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~ 226 (474)
.+++.|+|+..... +.. . ....+..++.++++|....+.+... +...++
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 58999999863221 100 0 1122356667777777776665432 011223
Q ss_pred CCCCCeEEEeCCCCccccchhhhhH-----------HHHHhHHHHHHhcCCCC--CCEEEEEecccccCcchHHHHHHHH
Q 011954 227 IRMPETYVVHLGNSKDLMDIAEDSV-----------ARRVLREHVRESLGVRD--DDLLFAIINSVSRGKGQDLFLHSFY 293 (474)
Q Consensus 227 ~~~~ki~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vgrl~~~Kg~~~ll~a~~ 293 (474)
....++.+|+||||.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~ 318 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALP 318 (485)
T ss_pred hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHH
Confidence 3567899999999999988764321 12233567899999974 4688999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH-hcCCEEEEcCCCCCCCCc
Q 011954 294 ESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL-ASIDVLVQNSQARGECFG 372 (474)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~-~~adv~v~ps~~~~E~~~ 372 (474)
++.+ .+++|+|+|+|+. ++.+.+++++++++ ...+.|+|+.+++..+| +.||+||+||. .|+||
T Consensus 319 ~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~-~~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~fG 383 (485)
T PRK14099 319 TLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP-GQIGVVIGYDEALAHLIQAGADALLVPSR--FEPCG 383 (485)
T ss_pred HHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC-CCEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCCc
Confidence 8864 5789999999851 25678888888775 23347999988899887 57999999999 89999
Q ss_pred hHHHHHHhcCCCEEEcCCCCcceeeeeC---------CceeeecCCCCChHHHHHHHHH---HhhCHHHHHHHHHHHHHH
Q 011954 373 RITIEAMAFQLPVLGTAAGGTMEIVVNG---------TTGLLHPTGKEGVTPLANNIVK---LATHVERRLTMGKKGYER 440 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~---ll~~~~~~~~~~~~~~~~ 440 (474)
++++|||+||+|+|++++||+.|+|.++ .+|++++++| +++|+++|.+ +++|++.+++|++++++
T Consensus 384 l~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai~~a~~l~~d~~~~~~l~~~~~~- 460 (485)
T PRK14099 384 LTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAALRKTAALFADPVAWRRLQRNGMT- 460 (485)
T ss_pred HHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-
Confidence 9999999999999999999999998775 5899999999 9999999997 67799999999998863
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 441 VKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
++|||++++++|+++|+++++.
T Consensus 461 --~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 461 --TDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred --hcCChHHHHHHHHHHHHHHHhh
Confidence 6799999999999999999865
No 4
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-43 Score=357.96 Aligned_cols=376 Identities=14% Similarity=0.103 Sum_probs=274.2
Q ss_pred ccCEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcc-----c--ch------------
Q 011954 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLE-----H--KM------------ 129 (474)
Q Consensus 73 ~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----~--~~------------ 129 (474)
+.|||+||+.+..| ||..-++..|.++|++.||+|.|+++.++.........+. . .+
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 559 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTG 559 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEE
Confidence 47899999998655 8889999999999999999999999877643311000000 0 00
Q ss_pred hccceeeeehh------------------cH-H---------HHhh--hcCCCEEEEcccchhhHHhHHhhhc--ccccc
Q 011954 130 LDRGVQVLSAK------------------GE-K---------AINT--ALNADLVVLNTAVAGKWLDGVLKDK--VSQVL 177 (474)
Q Consensus 130 ~~~~~~~~~~~------------------~~-~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~~ 177 (474)
...|+.++... .. + .+.. ..+|||||+|+..++.+...+.... .....
T Consensus 560 ~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~ 639 (977)
T PLN02939 560 TVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNS 639 (977)
T ss_pred EECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCC
Confidence 00122222110 00 0 1111 2689999999987766433322211 01123
Q ss_pred cceeeeeecccccc-chh----------hh------------------hhcccccccccccccccHHHHHHh----HHHH
Q 011954 178 PKVLWWIHEMRGHY-FKL----------EY------------------VKHLPFVAGAMIDSYTTAEYWKNR----TRER 224 (474)
Q Consensus 178 ~~~v~~~h~~~~~~-~~~----------~~------------------~~~~~~~~~~~~~s~~~~~~~~~~----~~~~ 224 (474)
.+++.++|+..... +.. .+ ...+.+.+.++++|....+.+... +...
T Consensus 640 ~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~ 719 (977)
T PLN02939 640 ARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDT 719 (977)
T ss_pred CcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHH
Confidence 58999999864111 000 00 011224455666666665554431 1123
Q ss_pred hcCCCCCeEEEeCCCCccccchhhhhH-----------HHHHhHHHHHHhcCCCC---CCEEEEEecccccCcchHHHHH
Q 011954 225 LGIRMPETYVVHLGNSKDLMDIAEDSV-----------ARRVLREHVRESLGVRD---DDLLFAIINSVSRGKGQDLFLH 290 (474)
Q Consensus 225 ~~~~~~ki~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~---~~~~i~~vgrl~~~Kg~~~ll~ 290 (474)
++....++.+|+||||.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.+++
T Consensus 720 L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLle 799 (977)
T PLN02939 720 LKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRH 799 (977)
T ss_pred hccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHH
Confidence 456678999999999999998765321 22334677999999974 4589999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC--hHHHHhcCCEEEEcCCCCC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT--VSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~--~~~~~~~adv~v~ps~~~~ 368 (474)
|+..+.+ ++++|+|+|+|+.. .+...++.+++++++.++|.|+|..++ ...+|+.||+||+||+ .
T Consensus 800 A~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr--~ 866 (977)
T PLN02939 800 AIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSM--F 866 (977)
T ss_pred HHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCC--c
Confidence 9988754 57899999999622 256788999999999899999997654 3689999999999999 8
Q ss_pred CCCchHHHHHHhcCCCEEEcCCCCcceeeee---------CCceeeecCCCCChHHHHHHHHHHhh----CHHHHHHHHH
Q 011954 369 ECFGRITIEAMAFQLPVLGTAAGGTMEIVVN---------GTTGLLHPTGKEGVTPLANNIVKLAT----HVERRLTMGK 435 (474)
Q Consensus 369 E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~---------~~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~ 435 (474)
|+||++++|||+||+|+|++++||+.|+|.+ +.+|++++++| +++|+++|.++++ |++.+++|++
T Consensus 867 EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~eaLa~AL~rAL~~~~~dpe~~~~L~~ 944 (977)
T PLN02939 867 EPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQGLNSALERAFNYYKRKPEVWKQLVQ 944 (977)
T ss_pred cCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCC--HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999999999999999999875 47999999998 9999999998775 7999999988
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 436 KGYERVKDRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 436 ~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
++. .+.|||+.++++|+++|++++...+
T Consensus 945 ~am---~~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 945 KDM---NIDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred HHH---HhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 664 4679999999999999999987654
No 5
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=9.6e-44 Score=353.98 Aligned_cols=356 Identities=17% Similarity=0.155 Sum_probs=260.1
Q ss_pred cccCEEEEEecCC---CCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc-------chhccceeeeehhc
Q 011954 72 MKSKLVLLVSHEL---SLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH-------KMLDRGVQVLSAKG 141 (474)
Q Consensus 72 ~~~~kIl~v~~~~---~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 141 (474)
+++|||+++.... ..||++.++.+++++|.++||+|++++...+............ ........+.....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPR 135 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHH
Confidence 6789999997543 3389999999999999999999999996543211000000000 00000001111113
Q ss_pred HHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh--------h----hhhccccccccccc
Q 011954 142 EKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL--------E----YVKHLPFVAGAMID 209 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~--------~----~~~~~~~~~~~~~~ 209 (474)
...+.+..+||+||+|++....+........ ...|++.+.|+....+... . .....+..+.+++.
T Consensus 136 l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~---~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~ 212 (465)
T PLN02871 136 IISEVARFKPDLIHASSPGIMVFGALFYAKL---LCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVT 212 (465)
T ss_pred HHHHHHhCCCCEEEECCCchhHHHHHHHHHH---hCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEEC
Confidence 4556667899999999864433322222221 2357888888643221110 0 01122344555555
Q ss_pred ccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcC-CCCCCEEEEEecccccCcchHHH
Q 011954 210 SYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLG-VRDDDLLFAIINSVSRGKGQDLF 288 (474)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~vgrl~~~Kg~~~l 288 (474)
+....+. +......+.+++.+||||+|.+.|.+.... ..++.++. .++++++|+|+||+.+.||++.+
T Consensus 213 S~~~~~~----l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~l 281 (465)
T PLN02871 213 SPALGKE----LEAAGVTAANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKPLIVYVGRLGAEKNLDFL 281 (465)
T ss_pred CHHHHHH----HHHcCCCCcCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCeEEEEeCCCchhhhHHHH
Confidence 5554444 333333456789999999999988764321 23444443 23467889999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC
Q 011954 289 LHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~ 366 (474)
+++++++ ++++|+|+|+|+ +.++++++++. .+|+|+|++ +++..+|+.||++|+||.
T Consensus 282 i~a~~~~-----------~~~~l~ivG~G~-----~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~- 340 (465)
T PLN02871 282 KRVMERL-----------PGARLAFVGDGP-----YREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPSE- 340 (465)
T ss_pred HHHHHhC-----------CCcEEEEEeCCh-----HHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECCc-
Confidence 9998755 789999999996 77788887764 379999987 789999999999999998
Q ss_pred CCCCCchHHHHHHhcCCCEEEcCCCCcceeeee---CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 367 RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN---GTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 367 ~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
.|+||++++|||+||+|||+++.||+.|++.+ +++|++++++| +++++++|.++++|++.+++|++++++++.
T Consensus 341 -~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~- 416 (465)
T PLN02871 341 -SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMGAAAREEVE- 416 (465)
T ss_pred -ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-
Confidence 89999999999999999999999999999998 89999999998 999999999999999999999999999885
Q ss_pred hcCHHHHHHHHHH-HHHHHHhhhh
Q 011954 444 RFLEHHMSQRIAL-VLREVLQYAK 466 (474)
Q Consensus 444 ~fs~~~~~~~~~~-~~~~~~~~~~ 466 (474)
+|+|+.+++++++ .|++++...+
T Consensus 417 ~fsw~~~a~~l~~~~Y~~~~~~~~ 440 (465)
T PLN02871 417 KWDWRAATRKLRNEQYSAAIWFWR 440 (465)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999998 7999987543
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.5e-43 Score=351.78 Aligned_cols=368 Identities=18% Similarity=0.180 Sum_probs=263.2
Q ss_pred CEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhh--ccc---------chhccceeeeeh
Q 011954 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYS--LEH---------KMLDRGVQVLSA 139 (474)
Q Consensus 75 ~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~ 139 (474)
|||++++.+..| ||.+.++..|+++|+++||+|.|+++..+......... ... .....|+.++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 789999988544 88899999999999999999999997755322110000 000 001122322210
Q ss_pred h----------------c---------HHHHhh--hcCCCEEEEcccchhhHHhHHhhhc-ccccccceeeeeecccccc
Q 011954 140 K----------------G---------EKAINT--ALNADLVVLNTAVAGKWLDGVLKDK-VSQVLPKVLWWIHEMRGHY 191 (474)
Q Consensus 140 ~----------------~---------~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~h~~~~~~ 191 (474)
. . ...+.. ..+|||||+|+..++.....+.... ......|++.++|+.....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g 160 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQG 160 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCC
Confidence 0 0 001111 1489999999866554333322211 1112368999999864211
Q ss_pred -chh---------------h----------hhhcccccccccccccccHHHHHHh-----HHHHhcCCCCCeEEEeCCCC
Q 011954 192 -FKL---------------E----------YVKHLPFVAGAMIDSYTTAEYWKNR-----TRERLGIRMPETYVVHLGNS 240 (474)
Q Consensus 192 -~~~---------------~----------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~ki~vi~ngvd 240 (474)
+.. . ....+...+.++++|....+.+... +...++....++.+|+||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid 240 (466)
T PRK00654 161 LFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGID 240 (466)
T ss_pred cCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCC
Confidence 100 0 0112345566666766665554421 11123445678999999999
Q ss_pred ccccchhhhhH-----------HHHHhHHHHHHhcCCCC-CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc
Q 011954 241 KDLMDIAEDSV-----------ARRVLREHVRESLGVRD-DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS 308 (474)
Q Consensus 241 ~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~-~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (474)
.+.|.|..+.. .+...+..+++++|+++ +.++|+++||+.++||++.+++|+.++.+ .+
T Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~~ 311 (466)
T PRK00654 241 YDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------QG 311 (466)
T ss_pred ccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------cC
Confidence 99987753211 12233567899999975 67899999999999999999999998865 57
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEE-EecCCCC-hHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVH-FVNKTLT-VSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
++|+|+|+|+. .+.+.+++++++++. ++. +.|+.++ +..+|+.||++|+||. .|+||++++|||+||+|+|
T Consensus 312 ~~lvivG~g~~---~~~~~l~~l~~~~~~--~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 312 GQLVLLGTGDP---ELEEAFRALAARYPG--KVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPI 384 (466)
T ss_pred CEEEEEecCcH---HHHHHHHHHHHHCCC--cEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEE
Confidence 99999999842 256788999988873 455 4677644 5689999999999999 8999999999999999999
Q ss_pred EcCCCCcceeeeeC------CceeeecCCCCChHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011954 387 GTAAGGTMEIVVNG------TTGLLHPTGKEGVTPLANNIVKLAT---HVERRLTMGKKGYERVKDRFLEHHMSQRIALV 457 (474)
Q Consensus 387 ~s~~~g~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 457 (474)
++++||+.|+|.++ .+|++++++| +++|+++|.++++ +++.+.+|++++++ ++|||++++++|+++
T Consensus 385 ~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~l 459 (466)
T PRK00654 385 VRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRALELYRQPPLWRALQRQAMA---QDFSWDKSAEEYLEL 459 (466)
T ss_pred EeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHHHHHHHHH
Confidence 99999999999888 8999999999 9999999999876 77778888887753 679999999999999
Q ss_pred HHHHHh
Q 011954 458 LREVLQ 463 (474)
Q Consensus 458 ~~~~~~ 463 (474)
|+++++
T Consensus 460 Y~~~~~ 465 (466)
T PRK00654 460 YRRLLG 465 (466)
T ss_pred HHHHhh
Confidence 999864
No 7
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.1e-43 Score=345.94 Aligned_cols=349 Identities=18% Similarity=0.204 Sum_probs=261.3
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCch--h--hhhhc-------ccchh----cc-------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPD--E--VIYSL-------EHKML----DR------- 132 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--~--~~~~~-------~~~~~----~~------- 132 (474)
|||+++.+.++ .-.|+++.+-+.+|.++||+|.+++...+.... . ..+.+ ..... ..
T Consensus 1 m~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 68999999877 444899999999999999999999965443210 0 00000 00000 00
Q ss_pred --cee----e--eehh----cH---------HHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc
Q 011954 133 --GVQ----V--LSAK----GE---------KAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY 191 (474)
Q Consensus 133 --~~~----~--~~~~----~~---------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~ 191 (474)
... . .... .. ....+..+||+||+|....+.....+... .....+.++++|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~--~~~~~~~~~t~Hg~d~~~ 157 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLREL--GVLRGKIATIFHGIDISS 157 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHh--CCCCCCeEEEEccccccc
Confidence 000 0 0000 00 11123468999999987655433333221 112235677899753221
Q ss_pred ------chhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcC
Q 011954 192 ------FKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLG 265 (474)
Q Consensus 192 ------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~ 265 (474)
+...+...+...+.+++.|....+. +. .++++.+++.+||||+|.+.|.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~----l~-~~g~~~~ki~vi~nGvd~~~f~~~~~~--------------- 217 (406)
T PRK15427 158 REVLNHYTPEYQQLFRRGDLMLPISDLWAGR----LQ-KMGCPPEKIAVSRMGVDMTRFSPRPVK--------------- 217 (406)
T ss_pred chhhhhhhHHHHHHHHhCCEEEECCHHHHHH----HH-HcCCCHHHEEEcCCCCCHHHcCCCccc---------------
Confidence 1112333445566666665554444 33 357788899999999999988653211
Q ss_pred CCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec
Q 011954 266 VRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN 345 (474)
Q Consensus 266 ~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (474)
.+.+++.|+++||+.+.||++.+++|++.+.+ ++++++|+|+|+|+ ..++++++++++++.++|+|+|
T Consensus 218 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G~-----~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 APATPLEIISVARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIGP-----WERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECch-----hHHHHHHHHHHcCCCCeEEEeC
Confidence 12456789999999999999999999998865 45899999999996 7889999999999999999999
Q ss_pred CC--CChHHHHhcCCEEEEcCCC----CCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHH
Q 011954 346 KT--LTVSPYLASIDVLVQNSQA----RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANN 419 (474)
Q Consensus 346 ~~--~~~~~~~~~adv~v~ps~~----~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (474)
+. +++.++|+.||++|+||.. ..||+|++++|||+||+|||+|+.||++|++.++.+|++++++| +++++++
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d--~~~la~a 363 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPEND--AQALAQR 363 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCC--HHHHHHH
Confidence 85 6899999999999999972 13999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 420 IVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 420 i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
|.++++ |++.+++|++++++++.++|+|+.+++++.++|++
T Consensus 364 i~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 364 LAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999 99999999999999999999999999999999976
No 8
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.9e-43 Score=343.89 Aligned_cols=356 Identities=21% Similarity=0.219 Sum_probs=267.5
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc-chhccceee--------eehhcHHHH
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH-KMLDRGVQV--------LSAKGEKAI 145 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~ 145 (474)
|||+++++ ...||.++++.+++++|.+.||+|++++...+............ ......... ........+
T Consensus 1 mki~~~~~-p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (371)
T cd04962 1 MKIGIVCY-PTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEV 79 (371)
T ss_pred CceeEEEE-eCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHHHHH
Confidence 68999985 44589899999999999999999999996543211110000000 000000000 001223344
Q ss_pred hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc------chhhhhhcccccccccccccccHHHHHH
Q 011954 146 NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY------FKLEYVKHLPFVAGAMIDSYTTAEYWKN 219 (474)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (474)
.+..+||+||+|.+....+..............++++++|+..... +.......++.++.+++.+....+.+.
T Consensus 80 i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~- 158 (371)
T cd04962 80 AKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQETY- 158 (371)
T ss_pred HhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHHHH-
Confidence 5568999999997544322222222111112468888999653211 111122334556666666665544433
Q ss_pred hHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHH
Q 011954 220 RTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLI 299 (474)
Q Consensus 220 ~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~ 299 (474)
+.++ ...++.+||||+|...+.+.. ....+++++.++++++++++||+.+.||++.+++++.++.+
T Consensus 159 ---~~~~-~~~~i~vi~n~~~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~-- 224 (371)
T cd04962 159 ---ELFD-ITKEIEVIPNFVDEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRK-- 224 (371)
T ss_pred ---HhcC-CcCCEEEecCCcCHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHh--
Confidence 3333 457899999999988776543 23456678888888999999999999999999999988754
Q ss_pred HHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH
Q 011954 300 REKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 300 ~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm 379 (474)
+ .+++|+++|+|+ ..+.++++++++++.++|.|+|+++++.++|+.||++|+||. .|++|++++|||
T Consensus 225 -----~-~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~~~~~~~EAm 291 (371)
T cd04962 225 -----E-VPARLLLVGDGP-----ERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KESFGLAALEAM 291 (371)
T ss_pred -----c-CCceEEEEcCCc-----CHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCCCccHHHHHH
Confidence 2 568999999996 567889999999999999999999999999999999999998 899999999999
Q ss_pred hcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 380 AFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 380 a~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
++|+|||+|+.||..|++.++.+|++++++| +++++++|.+++++++.+.+|++++++.+.++|||+.+++++.++|+
T Consensus 292 a~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 292 ACGVPVVASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred HcCCCEEEeCCCCchhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 99999999999999999999999999998899999999999999998
Q ss_pred HH
Q 011954 460 EV 461 (474)
Q Consensus 460 ~~ 461 (474)
++
T Consensus 370 ~~ 371 (371)
T cd04962 370 RL 371 (371)
T ss_pred hC
Confidence 63
No 9
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.1e-43 Score=345.60 Aligned_cols=343 Identities=19% Similarity=0.160 Sum_probs=258.7
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeee----------------
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVL---------------- 137 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 137 (474)
||+++++.+.| ||.++++.+|+++|.++||+|+|+|...+..... .....++.+.
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~i~v~~~p~~~~~~~~~~~~~ 73 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI-------RYLTNGLKVYYLPFVVFYNQSTLPTF 73 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc-------ccccCceeEEEecceeccCCccccch
Confidence 69999997665 8889999999999999999999999653321100 0000111111
Q ss_pred --ehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc------hhhhhhccccccccccc
Q 011954 138 --SAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF------KLEYVKHLPFVAGAMID 209 (474)
Q Consensus 138 --~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~------~~~~~~~~~~~~~~~~~ 209 (474)
....++......+||+||+|+..........+... ....|++++.|+...... .......++..+.+++.
T Consensus 74 ~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~--~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 74 FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHAR--TMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICV 151 (398)
T ss_pred hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhh--hcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEe
Confidence 11223445556899999999865443222211111 123578889997532110 11111223455666665
Q ss_pred ccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 210 SYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
+....+. +....+++..++.+||||+|.+.|.+.... .+++.++++++||+.+.||++.++
T Consensus 152 s~~~~~~----~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~~li 212 (398)
T cd03796 152 SHTSKEN----TVLRASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGIDLLV 212 (398)
T ss_pred cHhHhhH----HHHHhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHHHHH
Confidence 5554443 233456677899999999999888654321 235678999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCC
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQAR 367 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~ 367 (474)
+|+..+.+ +.++++|+|+|+|+ ..+.++++++++++.++|+|+|+. +++..+|+.||++|+||.
T Consensus 213 ~a~~~l~~-------~~~~~~l~i~G~g~-----~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~-- 278 (398)
T cd03796 213 GIIPEICK-------KHPNVRFIIGGDGP-----KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL-- 278 (398)
T ss_pred HHHHHHHh-------hCCCEEEEEEeCCc-----hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh--
Confidence 99998865 45899999999986 678899999999999999999975 789999999999999998
Q ss_pred CCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 011954 368 GECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLE 447 (474)
Q Consensus 368 ~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~ 447 (474)
.|+||++++|||+||+|||+|+.||.+|++.++ .++++++ | +++++++|.+++++......+++++++.+.++|||
T Consensus 279 ~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~-~~~~~~~-~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~ 354 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPD-MILLAEP-D--VESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSW 354 (398)
T ss_pred hhccCHHHHHHHHcCCCEEECCCCCchhheeCC-ceeecCC-C--HHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCH
Confidence 899999999999999999999999999999765 4555544 6 89999999999998777777889999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011954 448 HHMSQRIALVLREVLQY 464 (474)
Q Consensus 448 ~~~~~~~~~~~~~~~~~ 464 (474)
+.++++++++|++++..
T Consensus 355 ~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 355 EDVAKRTEKVYDRILQT 371 (398)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999864
No 10
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.7e-43 Score=357.11 Aligned_cols=353 Identities=16% Similarity=0.151 Sum_probs=256.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCc--------------EEEEEeCC--CCCCchhhhhhcccchhccceeeee-
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGA--------------EVVWITNQ--KPNEPDEVIYSLEHKMLDRGVQVLS- 138 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (474)
||+++.+....||+|+++.+|+.+|.+.++ +|.+++.. .+.... ...+...|+.+..
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~------~~~L~~~Gv~v~~l 356 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFF------AATLADAGIPVSVY 356 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchH------HHHHHhCCCeEEEe
Confidence 799999999999999999999999999854 45555321 111111 1111112211111
Q ss_pred --------------------------------hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceee-eee
Q 011954 139 --------------------------------AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLW-WIH 185 (474)
Q Consensus 139 --------------------------------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~h 185 (474)
...+..+.+..+|||||+|+..+..+...+ .... ..|+++ +.|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lA-a~~~---gvPvIv~t~h 432 (694)
T PRK15179 357 SDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALA-ALLA---GVPRIVLSVR 432 (694)
T ss_pred ccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHHc---CCCEEEEEeC
Confidence 123345566789999999987664432222 2111 234444 456
Q ss_pred ccccccchhhh----h---hcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHH
Q 011954 186 EMRGHYFKLEY----V---KHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLRE 258 (474)
Q Consensus 186 ~~~~~~~~~~~----~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (474)
..........+ . ..+...+..+ ....++..++.+.+.++++.+++.|||||||.+.|.+.+.... .+.
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~i--~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~---~~~ 507 (694)
T PRK15179 433 TMPPVDRPDRYRVEYDIIYSELLKMRGVA--LSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTA---MMA 507 (694)
T ss_pred CCccccchhHHHHHHHHHHHHHHhcCCeE--EEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhH---HHH
Confidence 53221111111 1 1111122221 1222333444455567888899999999999988764322100 001
Q ss_pred HHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC
Q 011954 259 HVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ 338 (474)
Q Consensus 259 ~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~ 338 (474)
.++ ...+++.++|+++||+.+.||++.+++|++++.+ ++++++|+|+|+|+ ..+.++++++++++.
T Consensus 508 ~~~--~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G~-----~~~~L~~l~~~lgL~ 573 (694)
T PRK15179 508 QFD--ARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA-------SHPKVRFIMVGGGP-----LLESVREFAQRLGMG 573 (694)
T ss_pred hhc--cccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH-------HCcCeEEEEEccCc-----chHHHHHHHHHcCCC
Confidence 111 2234567899999999999999999999998876 45899999999996 788999999999999
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHH
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLAN 418 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (474)
++|+|+|+++++..+|+.+|++|+||. .||||++++|||+||+|||+|++||++|+|.++.+|++++++|.+++++++
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~ 651 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAE 651 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHH
Confidence 999999999999999999999999998 899999999999999999999999999999999999999988844579999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 419 NIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
+|.+++.+......+++++++++.++|||+.++++++++|+
T Consensus 652 aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 652 ALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99998887766778899999999999999999999999995
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=4.5e-43 Score=346.32 Aligned_cols=352 Identities=14% Similarity=0.154 Sum_probs=243.0
Q ss_pred CChhHHHHHHHHHHHhcCc--EEEEEeCCCCCCc--hhhhhhcccchhccceeeeehh---------------------c
Q 011954 87 SGGPLLLMELAFLLRGVGA--EVVWITNQKPNEP--DEVIYSLEHKMLDRGVQVLSAK---------------------G 141 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------------~ 141 (474)
||+++++.+|+++|.++|| +|+|+|...+... ......... ...|+.+.... .
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~--~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIER--IAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeE--eCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 8889999999999999997 9999995422110 000000110 11233332211 1
Q ss_pred HHHHhhh--cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh---------h-------------hh
Q 011954 142 EKAINTA--LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL---------E-------------YV 197 (474)
Q Consensus 142 ~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~---------~-------------~~ 197 (474)
...+.+. .+|||||+|+..++.. ...+... ...|++.+.|+........ . ..
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~~~~~-~~~~~~~---~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYADAGYV-GARLSRL---LGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchhHHHH-HHHHHHH---hCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 2222332 3699999997654433 2222222 2358899999742211000 0 01
Q ss_pred hcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEec
Q 011954 198 KHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIIN 277 (474)
Q Consensus 198 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vg 277 (474)
..+...+.+++.+. ....+.+....+++++++.|||||+|.+.|.+..........+. .++.++.+++.++|+++|
T Consensus 180 ~~~~~ad~ii~~s~---~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~vG 255 (439)
T TIGR02472 180 ETLAHASLVITSTH---QEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDN-LLAPFLKDPEKPPILAIS 255 (439)
T ss_pred HHHHhCCEEEECCH---HHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHH-HHHhhccccCCcEEEEEc
Confidence 12234444444332 22222222223677889999999999998876532211111112 223345556678999999
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc------hHHHHHHHHHHHcCCCCeEEEecC--CCC
Q 011954 278 SVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT------KFETELRNFVAEKKIQDHVHFVNK--TLT 349 (474)
Q Consensus 278 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~------~~~~~l~~~~~~~~l~~~v~~~g~--~~~ 349 (474)
|+.+.||++.+++|++++.+ ++ ..+++. +|+|+|+.... ++.+++.++++++++.++|+|+|+ .++
T Consensus 256 rl~~~Kg~~~li~A~~~l~~-~~----~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~ 329 (439)
T TIGR02472 256 RPDRRKNIPSLVEAYGRSPK-LQ----EMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDD 329 (439)
T ss_pred CCcccCCHHHHHHHHHhChh-hh----hhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHH
Confidence 99999999999999986522 11 113333 36787753221 123446677889999999999996 478
Q ss_pred hHHHHhcC----CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 350 VSPYLASI----DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 350 ~~~~~~~a----dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+.++|+.| |+||+||. .|+||++++||||||+|||+|+.||++|++.++.+|++++++| +++|+++|.++++
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i~~ll~ 405 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLD--LEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHh
Confidence 99999977 99999999 8999999999999999999999999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 426 HVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
|++.+++|++++++++.++|||+.++++|++++
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999876
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=6.2e-43 Score=344.22 Aligned_cols=357 Identities=15% Similarity=0.079 Sum_probs=263.7
Q ss_pred CEEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCch----hhhhhcccchhccceeeeehh--------
Q 011954 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPD----EVIYSLEHKMLDRGVQVLSAK-------- 140 (474)
Q Consensus 75 ~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------- 140 (474)
|||++++..+.| ||++.++.+|+++|.+.||+|+|+|........ .............++.+...+
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 789999987655 888999999999999999999999965221100 000000000011233332211
Q ss_pred ---c-----------HHHHhh--hcCCCEEEEcccchhh-HHhHHhhhcccccccceeeeeecccccc------ch-h--
Q 011954 141 ---G-----------EKAINT--ALNADLVVLNTAVAGK-WLDGVLKDKVSQVLPKVLWWIHEMRGHY------FK-L-- 194 (474)
Q Consensus 141 ---~-----------~~~~~~--~~~~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~-~-- 194 (474)
. ...+.+ ..+||+||+|.+.... .....+... ...|+++++|+..... .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~---~~~~~v~~~~d~~~~~~~~~~~~~~~~~ 157 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARL---SGARTWLHIQDYEVDAAFGLGLLKGGKV 157 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHh---hCCCEEEEeccCCHHHHHHhCCccCcHH
Confidence 0 011111 2689999999754321 112222211 2246777787643210 00 0
Q ss_pred ------hhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCC
Q 011954 195 ------EYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRD 268 (474)
Q Consensus 195 ------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (474)
.....++.++.+++.|....+.+. .++.+..++.+||||+|.+.|.+.... .+..+++++++++
T Consensus 158 ~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~-----~~~~~~~~i~vi~ngvd~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (412)
T PRK10307 158 ARLATAFERSLLRRFDNVSTISRSMMNKAR-----EKGVAAEKVIFFPNWSEVARFQPVADA-----DVDALRAQLGLPD 227 (412)
T ss_pred HHHHHHHHHHHHhhCCEEEecCHHHHHHHH-----HcCCCcccEEEECCCcCHhhcCCCCcc-----chHHHHHHcCCCC
Confidence 011223456666666666655543 346777899999999999888654321 1345788899988
Q ss_pred CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC-
Q 011954 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT- 347 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (474)
++++++|+|++.+.||++.+++|++++. +.++++|+|+|+|+ ..++++++++++++. +|+|+|++
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~--------~~~~~~l~ivG~g~-----~~~~l~~~~~~~~l~-~v~f~G~~~ 293 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLR--------DRPDLIFVICGQGG-----GKARLEKMAQCRGLP-NVHFLPLQP 293 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhc--------cCCCeEEEEECCCh-----hHHHHHHHHHHcCCC-ceEEeCCCC
Confidence 8899999999999999999999998763 23789999999996 678899999999986 79999975
Q ss_pred -CChHHHHhcCCEEEEcCCCCCCC----CchHHHHHHhcCCCEEEcCCCC--cceeeeeCCceeeecCCCCChHHHHHHH
Q 011954 348 -LTVSPYLASIDVLVQNSQARGEC----FGRITIEAMAFQLPVLGTAAGG--TMEIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 348 -~~~~~~~~~adv~v~ps~~~~E~----~~~~~~EAma~G~PvI~s~~~g--~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
+++.++|+.||++|+||. .|+ +|.+++|||+||+|||+|+.|| ..|++. ++|++++++| +++++++|
T Consensus 294 ~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d--~~~la~~i 367 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPES--VEALVAAI 367 (412)
T ss_pred HHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCC--HHHHHHHH
Confidence 689999999999999998 677 5778999999999999999887 458885 5999999999 99999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 421 VKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 421 ~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
.++++|++.+++|++++++++.++|||+.++++++++|++++++
T Consensus 368 ~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 368 AALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999865
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.1e-42 Score=342.20 Aligned_cols=344 Identities=21% Similarity=0.249 Sum_probs=257.4
Q ss_pred CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh----------------------hcHH
Q 011954 86 LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA----------------------KGEK 143 (474)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 143 (474)
.||+++++.+|+++|.++||+|+|+|........... .. ..++.+... ...+
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVV-EV-----APGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLR 92 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcc-cc-----CCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999964322111000 00 011111110 0011
Q ss_pred HHhh--hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc---c------h---hhh--hhccccccccc
Q 011954 144 AINT--ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY---F------K---LEY--VKHLPFVAGAM 207 (474)
Q Consensus 144 ~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~---~------~---~~~--~~~~~~~~~~~ 207 (474)
.+.+ ..+||+||+|....+. +...+... ...|++.++|+..... + . ..+ ...+..++.++
T Consensus 93 ~~~~~~~~~~Diih~h~~~~~~-~~~~~~~~---~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi 168 (405)
T TIGR03449 93 AEARHEPGYYDLIHSHYWLSGQ-VGWLLRDR---WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLI 168 (405)
T ss_pred HHhhccCCCCCeEEechHHHHH-HHHHHHHh---cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEE
Confidence 1122 2479999999744432 22222221 2357889999753110 0 0 000 11234455555
Q ss_pred ccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHH
Q 011954 208 IDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDL 287 (474)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ 287 (474)
+.+.... +.+...++.+..++.+||||+|.+.|.+.. +...++++++++++++|+++||+.+.||++.
T Consensus 169 ~~s~~~~----~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 169 ANTDEEA----RDLVRHYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred ECCHHHH----HHHHHHcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHHH
Confidence 5554433 334445677778999999999998886542 3446778888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCc--EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEc
Q 011954 288 FLHSFYESLQLIREKKLQVPS--MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQN 363 (474)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~--~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~p 363 (474)
+++|+.++.+ +.++ ++|+|+|++..+..+..++++++++++++.++|+|+|+. +++.++|+.||++++|
T Consensus 237 li~a~~~l~~-------~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 309 (405)
T TIGR03449 237 LLRAVAELLD-------RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVP 309 (405)
T ss_pred HHHHHHHHHh-------hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEEC
Confidence 9999998865 3355 999999964322213667899999999999999999975 7899999999999999
Q ss_pred CCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 364 SQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 364 s~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
|. .|+||++++|||++|+|||+++.||..|++.++.+|++++++| +++++++|.+++++++.+++|++++++.+ +
T Consensus 310 s~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~ 384 (405)
T TIGR03449 310 SY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAAAVEHA-A 384 (405)
T ss_pred CC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-H
Confidence 98 8999999999999999999999999999999999999999988 99999999999999999999999999987 5
Q ss_pred hcCHHHHHHHHHHHHHHHHh
Q 011954 444 RFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~~~ 463 (474)
+|||+.+++++.++|.+++.
T Consensus 385 ~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 385 GFSWAATADGLLSSYRDALA 404 (405)
T ss_pred hCCHHHHHHHHHHHHHHHhh
Confidence 69999999999999998763
No 14
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=3.3e-42 Score=334.55 Aligned_cols=353 Identities=19% Similarity=0.179 Sum_probs=254.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh---cH----HH----
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK---GE----KA---- 144 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~---- 144 (474)
||+++++.+..||+++++.+++++|.+.||+|++++.................+....+. .+.. .. ..
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 79 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADIE-LSEEEKEIYLEWNEENAER 79 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCCC-CCHHHHHHHHHHHHHHhcc
Confidence 599999988889999999999999999999999998754432211111111111111111 1110 00 11
Q ss_pred HhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhh---hhcccccccccccccccHHHHHHhH
Q 011954 145 INTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEY---VKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
.....+||+||+|++....+ ..... ....|++++.|..........+ ...+..++..++.+ .++..
T Consensus 80 ~~~~~~~Dvv~~h~~~~~~~-~~~~~----~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~--- 148 (372)
T cd03792 80 PLLDLDADVVVIHDPQPLAL-PLFKK----KRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVP--- 148 (372)
T ss_pred ccccCCCCEEEECCCCchhH-HHhhh----cCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcC---
Confidence 12246899999998764322 11111 1135788889975433221111 12223344433333 22221
Q ss_pred HHHhcCCCCCeEEEeCCCCccccc-hhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHH
Q 011954 222 RERLGIRMPETYVVHLGNSKDLMD-IAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIR 300 (474)
Q Consensus 222 ~~~~~~~~~ki~vi~ngvd~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~ 300 (474)
.+++..++ +||||+|..... .... ......+++++++++++++|+++||+.+.||++.+++|++.+.+
T Consensus 149 ---~~~~~~~~-vipngvd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~--- 217 (372)
T cd03792 149 ---PQVPPRKV-IIPPSIDPLSGKNRELS----PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE--- 217 (372)
T ss_pred ---CCCCCceE-EeCCCCCCCccccCCCC----HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh---
Confidence 23444555 999999975311 1111 11145678889998889999999999999999999999998865
Q ss_pred HhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC----CChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 301 EKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT----LTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 301 ~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~----~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
+.++++|+|+|+|+...++..+.++++.+..++.++|.|+|.. +++..+|+.||++++||. .||||++++
T Consensus 218 ----~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~l 291 (372)
T cd03792 218 ----RVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVT 291 (372)
T ss_pred ----hCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHH
Confidence 3478999999999755444455566666677888899999864 678999999999999998 899999999
Q ss_pred HHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011954 377 EAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIAL 456 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 456 (474)
|||+||+|||+|+.+|..+++.++.+|+++++ .++++++|.+++++++.+++|++++++.+.++|+|+.++++|++
T Consensus 292 EA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 292 EALWKGKPVIAGPVGGIPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHHcCCCEEEcCCCCchhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999874 57899999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011954 457 VLREV 461 (474)
Q Consensus 457 ~~~~~ 461 (474)
+|+++
T Consensus 368 ~~~~~ 372 (372)
T cd03792 368 LISKL 372 (372)
T ss_pred HHHhC
Confidence 99863
No 15
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=7.5e-42 Score=329.12 Aligned_cols=348 Identities=18% Similarity=0.171 Sum_probs=249.5
Q ss_pred EEEEEecCCCCCChhHHHH----HHHHHHHhcCc--------EEEEEeC----CCCCCchhhhhhcccchhccceeee--
Q 011954 76 LVLLVSHELSLSGGPLLLM----ELAFLLRGVGA--------EVVWITN----QKPNEPDEVIYSLEHKMLDRGVQVL-- 137 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~----~l~~~L~~~G~--------~V~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (474)
.|++++..+..||+|+.+. +++++.++.|- -|.++|. ..+.+++ ...+...++.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 236 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFF------LKEVLEEQVEVLEI 236 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchh------HHHHHhcCCceEEe
Confidence 4999999999999999888 55555555543 4777772 2222111 111111111111
Q ss_pred -------------------------------ehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccce-eeeee
Q 011954 138 -------------------------------SAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKV-LWWIH 185 (474)
Q Consensus 138 -------------------------------~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~h 185 (474)
.......+.+..+||+||+|...+..+... ... +. ..|+ +.+.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~l-aA~-la--gvpviv~~~h 312 (578)
T PRK15490 237 AKITGNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIAL-AAL-IA--GVPRIQLGLR 312 (578)
T ss_pred eccchhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHH-HHH-hc--CCCEEEEeec
Confidence 112344566779999999998654333111 111 11 2344 44455
Q ss_pred ccccccchhhhhh---c-------ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHH
Q 011954 186 EMRGHYFKLEYVK---H-------LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRV 255 (474)
Q Consensus 186 ~~~~~~~~~~~~~---~-------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~ 255 (474)
............. . .+..+ .+..+..+ ++.+.+.++++++|+.|||||+|.+.|.+.....
T Consensus 313 ~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v----~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~---- 383 (578)
T PRK15490 313 GLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCV----TRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVP---- 383 (578)
T ss_pred ccCCcchhhHHHHHHHHhhhhceeEecch-hhhccHHH----HHHHHHHhCCCHHHEEEEeCCcchhhcCccchhh----
Confidence 4221111111100 0 11111 33344444 3445556788999999999999999887653211
Q ss_pred hHHHHHH--hcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH
Q 011954 256 LREHVRE--SLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA 333 (474)
Q Consensus 256 ~~~~~r~--~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~ 333 (474)
...++ ..+++++.++++++||+.+.||+..+++++.++.+ +.++++|+|+|+|+ ..++++++++
T Consensus 384 --~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk-------~~pdirLvIVGdG~-----~~eeLk~la~ 449 (578)
T PRK15490 384 --HKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ-------HHPATRFVLVGDGD-----LRAEAQKRAE 449 (578)
T ss_pred --HHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh-------HCCCeEEEEEeCch-----hHHHHHHHHH
Confidence 11222 23345666889999999999999999999988765 34899999999996 7889999999
Q ss_pred HcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCCh
Q 011954 334 EKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGV 413 (474)
Q Consensus 334 ~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~ 413 (474)
++++.++|+|+|+.+++..+|+.+|+||+||. .||||++++|||+||+|||+|++||..|+|.++.+|++++++| +
T Consensus 450 elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D--~ 525 (578)
T PRK15490 450 QLGILERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQ--T 525 (578)
T ss_pred HcCCCCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCC--h
Confidence 99999999999999999999999999999998 8999999999999999999999999999999999999999998 8
Q ss_pred HHHHHHH---HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 414 TPLANNI---VKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 414 ~~la~~i---~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
+++++++ ..+.+..+.+..|++++++++.++|||+.++++|.++|.+
T Consensus 526 ~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 526 VNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 8888877 4445555556679999999999999999999999999975
No 16
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=7.3e-42 Score=341.47 Aligned_cols=365 Identities=20% Similarity=0.190 Sum_probs=261.5
Q ss_pred CEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhh--------cc-------c---chhcc
Q 011954 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYS--------LE-------H---KMLDR 132 (474)
Q Consensus 75 ~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~--------~~-------~---~~~~~ 132 (474)
|||++++.+..| ||...++..|+++|+++||+|.|+++.++......... +. . .....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 789999998544 88899999999999999999999998765432211000 00 0 00001
Q ss_pred ceeeeeh-------------------h---------cHHHHh--hhcCCCEEEEcccchhhHHhHHhhhcccccccceee
Q 011954 133 GVQVLSA-------------------K---------GEKAIN--TALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLW 182 (474)
Q Consensus 133 ~~~~~~~-------------------~---------~~~~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 182 (474)
++.++.. . ....+. ...+|||||+|+..++.... .++........|+++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~-~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPA-LLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHH-HHHhhccCCCCCEEE
Confidence 1111100 0 000111 12689999999865554333 232222111268999
Q ss_pred eeeccccc-cchhh-------------------------hhhcccccccccccccccHHHHHHh-----HHHHhcCCCCC
Q 011954 183 WIHEMRGH-YFKLE-------------------------YVKHLPFVAGAMIDSYTTAEYWKNR-----TRERLGIRMPE 231 (474)
Q Consensus 183 ~~h~~~~~-~~~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~k 231 (474)
++|+.... .+... ....+..++.++++|....+.+... +...+.....+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 99986421 11110 0112345566666666665554321 00011224578
Q ss_pred eEEEeCCCCccccchhhhhH-----------HHHHhHHHHHHhcCCCC--CCEEEEEecccccCcchHHHHHHHHHHHHH
Q 011954 232 TYVVHLGNSKDLMDIAEDSV-----------ARRVLREHVRESLGVRD--DDLLFAIINSVSRGKGQDLFLHSFYESLQL 298 (474)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~ 298 (474)
+.+|+||+|.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.++.+
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~- 318 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE- 318 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH-
Confidence 99999999999988653311 12233567899999976 67899999999999999999999998865
Q ss_pred HHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 299 IREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 299 ~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
.+++|+|+|+|+ +++.+++++++.+++ +++.+.+.. +++..+|+.||++|+||. .|+||++++
T Consensus 319 --------~~~~lvi~G~g~---~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~l 383 (473)
T TIGR02095 319 --------LGGQLVVLGTGD---PELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQL 383 (473)
T ss_pred --------cCcEEEEECCCC---HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHH
Confidence 469999999984 236778888887765 567776643 457789999999999999 899999999
Q ss_pred HHHhcCCCEEEcCCCCcceeeeeC------CceeeecCCCCChHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHhcC
Q 011954 377 EAMAFQLPVLGTAAGGTMEIVVNG------TTGLLHPTGKEGVTPLANNIVKLAT----HVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~~~~~~~~~fs 446 (474)
|||+||+|||++++||+.|+|.++ .+|++++++| +++++++|.+++. +++.+++|++++++ ++||
T Consensus 384 EAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~---~~fs 458 (473)
T TIGR02095 384 YAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYD--PGALLAALSRALRLYRQDPSLWEALQKNAMS---QDFS 458 (473)
T ss_pred HHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCC
Confidence 999999999999999999999987 8999999999 9999999999888 89999999988763 6799
Q ss_pred HHHHHHHHHHHHHHH
Q 011954 447 EHHMSQRIALVLREV 461 (474)
Q Consensus 447 ~~~~~~~~~~~~~~~ 461 (474)
|++++++|+++|+++
T Consensus 459 w~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 459 WDKSAKQYVELYRSL 473 (473)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999999999863
No 17
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2e-41 Score=328.13 Aligned_cols=354 Identities=20% Similarity=0.247 Sum_probs=262.7
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc-chh-ccc-e-eeeehhcHHHHhhhcCC
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH-KML-DRG-V-QVLSAKGEKAINTALNA 151 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~-~~~-~-~~~~~~~~~~~~~~~~~ 151 (474)
|||++++.+..||+++.+.+++++|.+.||+|++++................ .+. ... . .+........+.+..+|
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 80 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATIILNLNMSKNPLSFLLALWKLRKILRQFKP 80 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccceEEecccccchhhHHHHHHHHHHHHhcCC
Confidence 4899998888899999999999999999999999985433221111000000 000 000 0 00011123345566899
Q ss_pred CEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCC
Q 011954 152 DLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPE 231 (474)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k 231 (474)
|+||+|...+..+.. +.+.. ...++++.+.|+.........+ ..+...........+++...+.+....+++..+
T Consensus 81 div~~~~~~~~~~~~-l~~~~--~~~~~~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 155 (360)
T cd04951 81 DVVHAHMFHANIFAR-LLRLF--LPSPPLICTAHSKNEGGRLRML--AYRLTDFLSDLTTNVSKEALDYFIASKAFNANK 155 (360)
T ss_pred CEEEEcccchHHHHH-HHHhh--CCCCcEEEEeeccCchhHHHHH--HHHHHhhccCceEEEcHHHHHHHHhccCCCccc
Confidence 999999865543322 22222 1235788888876422111111 111111222222233444455555555567789
Q ss_pred eEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEE
Q 011954 232 TYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHA 311 (474)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (474)
+.+||||+|.+.+.+.... ...+++++++++++++++++|++.+.||++.+++++.++.+ +.++++|
T Consensus 156 ~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~-------~~~~~~l 222 (360)
T cd04951 156 SFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS-------DYLDIKL 222 (360)
T ss_pred EEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh-------hCCCeEE
Confidence 9999999998887654322 35678888988888999999999999999999999998865 4478999
Q ss_pred EEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 312 VVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 312 ~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
+|+|+|+ ..+++++.++++++.++|.|+|+++++..+|+.||++++||. .|++|++++|||++|+|||+++.|
T Consensus 223 ~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~ 295 (360)
T cd04951 223 LIAGDGP-----LRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPVVATDAG 295 (360)
T ss_pred EEEcCCC-----cHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCEEEecCC
Confidence 9999986 678889999999998999999999999999999999999999 899999999999999999999999
Q ss_pred CcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 392 GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 392 g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
+..|++.+ +|++++++| +++++++|.++++ +++.++.++++ ++.+.++|||+.++++|.++|+
T Consensus 296 ~~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 296 GVREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred ChhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 99999965 899999988 9999999999995 67777777766 8888899999999999999996
No 18
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=2.4e-41 Score=331.03 Aligned_cols=344 Identities=20% Similarity=0.199 Sum_probs=257.8
Q ss_pred CEEEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----------
Q 011954 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------- 140 (474)
Q Consensus 75 ~kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (474)
|||++++..++| ||+++++.+|+++|.+. ++|.|++....... ..++.+....
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQRFD------------SEGLTVKGYRPWSELKEANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCchhc------------CCCeEEEEecChhhccchhhh
Confidence 789999998876 77789999999999887 77777775432210 1112221110
Q ss_pred ------cHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-------------hhhhhhccc
Q 011954 141 ------GEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-------------KLEYVKHLP 201 (474)
Q Consensus 141 ------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-------------~~~~~~~~~ 201 (474)
.........++|+||+|+....... .... .. ...|++++.|+...... .......+.
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~-~~~~-~~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAG-HLAK-KL--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIE 143 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHH-HHHH-Hh--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHh
Confidence 0011112247999999986554321 2111 11 23578889998642110 001122234
Q ss_pred ccccccccccccHHHHHHhHHHHh-cCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc
Q 011954 202 FVAGAMIDSYTTAEYWKNRTRERL-GIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS 280 (474)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~ 280 (474)
.++.+++.|....+. +.+.+ ++...++.+||||+|.+.+.+.. +...+++++++++.++|+++||+.
T Consensus 144 ~ad~vi~~S~~~~~~----~~~~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~ 211 (388)
T TIGR02149 144 AADRVIAVSGGMRED----ILKYYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRIT 211 (388)
T ss_pred hCCEEEEccHHHHHH----HHHHcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccc
Confidence 556666655555444 34444 56678899999999998886542 345678888888889999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCC-CCeEEEec-C--CCChHHHHhc
Q 011954 281 RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKI-QDHVHFVN-K--TLTVSPYLAS 356 (474)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l-~~~v~~~g-~--~~~~~~~~~~ 356 (474)
+.||++.+++|++++. ++++++++|+|+.. ++..+.+++.+.+++. .+++.+++ . .+++.++|+.
T Consensus 212 ~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 212 RQKGVPHLLDAVHYIP----------KDVQVVLCAGAPDT-PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred cccCHHHHHHHHHHHh----------hcCcEEEEeCCCCc-HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 9999999999998873 46889998877532 2356777877777765 34577765 3 3789999999
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCCh------HHHHHHHHHHhhCHHHH
Q 011954 357 IDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGV------TPLANNIVKLATHVERR 430 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~------~~la~~i~~ll~~~~~~ 430 (474)
||++|+||. .|++|++++|||+||+|||+|+.||.+|++.++.+|++++++| + ++++++|.++++|++.+
T Consensus 281 aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~ 356 (388)
T TIGR02149 281 AEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINILLADPELA 356 (388)
T ss_pred CCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHHHhCHHHH
Confidence 999999998 8999999999999999999999999999999999999999988 7 89999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011954 431 LTMGKKGYERVKDRFLEHHMSQRIALVLREVL 462 (474)
Q Consensus 431 ~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 462 (474)
++|++++++.+.++|||+.+++++.++|++++
T Consensus 357 ~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 357 KKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999864
No 19
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=4.3e-41 Score=333.15 Aligned_cols=368 Identities=17% Similarity=0.163 Sum_probs=263.3
Q ss_pred cCEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh---h-----hhhcccc-------------
Q 011954 74 SKLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE---V-----IYSLEHK------------- 128 (474)
Q Consensus 74 ~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~-----~~~~~~~------------- 128 (474)
||||+|++.+..| ||..-++..|.++|++.||+|.|+.+.+..-... . ...+...
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 5999999999655 8889999999999999999999999866443211 0 0000000
Q ss_pred -hhccceeeeehh-------------------------c-------HHHHhh--hcCCCEEEEcccchhhHHhHHhhhcc
Q 011954 129 -MLDRGVQVLSAK-------------------------G-------EKAINT--ALNADLVVLNTAVAGKWLDGVLKDKV 173 (474)
Q Consensus 129 -~~~~~~~~~~~~-------------------------~-------~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~ 173 (474)
....++.++-.. + ...+.. ..+|||||+|+..++.. ...++...
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~-~~~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLV-PLLLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH-HHHHHHHh
Confidence 000112221100 0 001111 25899999998554433 33332211
Q ss_pred ----cccccceeeeeeccccccc-h-h--------h--------------hhhcccccccccccccccHHHHHHhHHHHh
Q 011954 174 ----SQVLPKVLWWIHEMRGHYF-K-L--------E--------------YVKHLPFVAGAMIDSYTTAEYWKNRTRERL 225 (474)
Q Consensus 174 ----~~~~~~~v~~~h~~~~~~~-~-~--------~--------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (474)
.....|++.++|+...... . . . ....+..++.++++|....+.+...-...+
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~ 243 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAF 243 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCc
Confidence 1124689999998642210 0 0 0 011224556677777766665443100012
Q ss_pred cC------CCCCeEEEeCCCCccccchhhhhH-----------HHHHhHHHHHHhcCCCC--CCEEEEEecccccCcchH
Q 011954 226 GI------RMPETYVVHLGNSKDLMDIAEDSV-----------ARRVLREHVRESLGVRD--DDLLFAIINSVSRGKGQD 286 (474)
Q Consensus 226 ~~------~~~ki~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vgrl~~~Kg~~ 286 (474)
|+ ...++.+|+||||.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++
T Consensus 244 gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d 323 (489)
T PRK14098 244 GLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAE 323 (489)
T ss_pred ChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHH
Confidence 33 367899999999999998754321 12234667888999874 568999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcC
Q 011954 287 LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNS 364 (474)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps 364 (474)
.+++|+.++.+ ++++|+|+|+|+. .+++.+++++++++ ++|.|+|.. +++..+|+.||++|+||
T Consensus 324 ~li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~a~aDi~l~PS 389 (489)
T PRK14098 324 LLAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAIAGLDMLLMPG 389 (489)
T ss_pred HHHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHHHhCCEEEeCC
Confidence 99999998865 5899999999852 25678999988874 689999965 45789999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee----CCceeeecCCCCChHHHHHHHHHHh---hCHHHHHHHHHHH
Q 011954 365 QARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN----GTTGLLHPTGKEGVTPLANNIVKLA---THVERRLTMGKKG 437 (474)
Q Consensus 365 ~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~----~~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~~ 437 (474)
. .|+||++.+|||+||+|+|++++||+.|.+.+ +.+|++++++| +++|+++|.+++ +|++.++++++++
T Consensus 390 ~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~~~~~~~~ 465 (489)
T PRK14098 390 K--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYT--PEALVAKLGEALALYHDEERWEELVLEA 465 (489)
T ss_pred C--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9 89999999999999999999999999998864 67999999999 999999999865 5888888887665
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 438 YERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+.+.|||++++++|+++|+++++
T Consensus 466 ---~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 466 ---MERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred ---hcCCCChHHHHHHHHHHHHHHhc
Confidence 34779999999999999999863
No 20
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=9.6e-41 Score=323.48 Aligned_cols=340 Identities=16% Similarity=0.224 Sum_probs=248.8
Q ss_pred CEEEEEecC-C--CC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCC-Cchhhhhhcccchhccceeeeeh--------
Q 011954 75 KLVLLVSHE-L--SL---SGGPLLLMELAFLLRGVGAEVVWITNQKPN-EPDEVIYSLEHKMLDRGVQVLSA-------- 139 (474)
Q Consensus 75 ~kIl~v~~~-~--~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------- 139 (474)
.||++++.. + ++ ||+|+++.++++.|.. +|+++|...+. ...+... .+.++..++.
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 73 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVN------DNCDIHYIGFSRIYKRLF 73 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhcc------CCCceEEEEeccccchhh
Confidence 467776655 3 22 6779999999999953 99999954432 1110000 0001111111
Q ss_pred ------------hcHHHHhh---hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccc
Q 011954 140 ------------KGEKAINT---ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVA 204 (474)
Q Consensus 140 ------------~~~~~~~~---~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~ 204 (474)
........ ..++|+||+|+..... .. +.... ...+++.++|+... .. .+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~--~~-~~~~~--~~~~~v~~~h~~~~----~~---~~~~~~ 141 (380)
T PRK15484 74 QKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY--RQ-IRERA--PQAKLVMHMHNAFE----PE---LLDKNA 141 (380)
T ss_pred hhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH--HH-HHhhC--CCCCEEEEEecccC----hh---HhccCC
Confidence 01111121 2569999999844321 11 12222 23478888886521 11 123445
Q ss_pred cccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcc
Q 011954 205 GAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKG 284 (474)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg 284 (474)
.+++.|....+.+. +. .+..++.+||||+|.+.|.+.. ...++++++++.+..+|+++||+.+.||
T Consensus 142 ~ii~~S~~~~~~~~----~~--~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~Kg 207 (380)
T PRK15484 142 KIIVPSQFLKKFYE----ER--LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPDKG 207 (380)
T ss_pred EEEEcCHHHHHHHH----hh--CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCccccC
Confidence 56666655554433 22 3567899999999998876543 2346778888878899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC----chHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCC
Q 011954 285 QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ----TKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASID 358 (474)
Q Consensus 285 ~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~----~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~ad 358 (474)
++.+++|+.++.+ ++|+++|+|+|+|+... .++.+.+++++++++ .+++|+|+. +++.++|+.||
T Consensus 208 ~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aD 278 (380)
T PRK15484 208 ILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLAD 278 (380)
T ss_pred HHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCC
Confidence 9999999998865 45899999999986422 235566777777766 589999985 68999999999
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCcee-eecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 359 VLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGL-LHPTGKEGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 359 v~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~-l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
++|+||.+ .|+||++++|||+||+|||+|+.||++|++.++.+|+ ++++.| +++++++|.++++|++. .+|++++
T Consensus 279 v~v~pS~~-~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~-~~~~~~a 354 (380)
T PRK15484 279 LVVVPSQV-EEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL-TQIAEQA 354 (380)
T ss_pred EEEeCCCC-ccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH-HHHHHHH
Confidence 99999984 6999999999999999999999999999999999999 567778 99999999999999985 7899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH
Q 011954 438 YERVKDRFLEHHMSQRIALVLREVL 462 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~~~~~ 462 (474)
++.+.++|||+.++++++++|++.+
T Consensus 355 r~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 355 KDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 21
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.4e-40 Score=341.12 Aligned_cols=378 Identities=15% Similarity=0.118 Sum_probs=261.5
Q ss_pred cccCEEEEEecCCC-------------CCChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhhhhcc----------
Q 011954 72 MKSKLVLLVSHELS-------------LSGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVIYSLE---------- 126 (474)
Q Consensus 72 ~~~~kIl~v~~~~~-------------~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~---------- 126 (474)
.++|.|++|+.... .||...++.+|+++|+++| |+|+++|...........+..+
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 35788999986521 1455689999999999998 8999999654321100000000
Q ss_pred ----cchhccceeeeehh-----------c-----------HHHHhh--------------hcCCCEEEEcccchhhHHh
Q 011954 127 ----HKMLDRGVQVLSAK-----------G-----------EKAINT--------------ALNADLVVLNTAVAGKWLD 166 (474)
Q Consensus 127 ----~~~~~~~~~~~~~~-----------~-----------~~~~~~--------------~~~~DiV~~~~~~~~~~~~ 166 (474)
..-...|+.+++.+ . ...... ...||+||+|...++....
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHH
Confidence 00111244443321 0 001111 0149999999765554433
Q ss_pred HHhhhcccccccceeeeeeccccccch--------------------hh---hhhcccccccccccccccHHHHHHhH--
Q 011954 167 GVLKDKVSQVLPKVLWWIHEMRGHYFK--------------------LE---YVKHLPFVAGAMIDSYTTAEYWKNRT-- 221 (474)
Q Consensus 167 ~~~~~~~~~~~~~~v~~~h~~~~~~~~--------------------~~---~~~~~~~~~~~~~~s~~~~~~~~~~~-- 221 (474)
.++.. ...|++.+.|.+...... .. ....+..++.+++.+....+.....+
T Consensus 327 -~L~~~---lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 327 -LLSGA---LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred -HHHHh---hCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 33322 246899999965211100 00 01223455556665554444322111
Q ss_pred ----------------HHHhcCCCCCeEEEeCCCCccccchhhhhHHHH-------------HhHHHHHHhcCCCCCCEE
Q 011954 222 ----------------RERLGIRMPETYVVHLGNSKDLMDIAEDSVARR-------------VLREHVRESLGVRDDDLL 272 (474)
Q Consensus 222 ----------------~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~-------------~~~~~~r~~~~~~~~~~~ 272 (474)
...||...+++.|||||+|.+.|.|........ ....+++. +..++++++
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdkpv 481 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRKPM 481 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCCcE
Confidence 000223345999999999999998753221100 00123333 345677789
Q ss_pred EEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC------chHHHHHHHHHHHcCCCCeEEEecC
Q 011954 273 FAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ------TKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 273 i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~------~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
|+++||+.++||++.||+|+.++.+.. ..+++. +|+|+++... .+....++++++++++.++|.|+|+
T Consensus 482 IL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~ 555 (1050)
T TIGR02468 482 ILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKH 555 (1050)
T ss_pred EEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCC
Confidence 999999999999999999999885421 124665 4678764211 1235678899999999999999997
Q ss_pred --CCChHHHHhcC----CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHH
Q 011954 347 --TLTVSPYLASI----DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 347 --~~~~~~~~~~a----dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
.+++..+|+.| |+||+||. .|+||++++||||||+|||+|++||+.|++.++.+|++++++| +++|+++|
T Consensus 556 v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D--~eaLA~AL 631 (1050)
T TIGR02468 556 HKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHD--QQAIADAL 631 (1050)
T ss_pred CCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCC--HHHHHHHH
Confidence 48899999988 69999999 9999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011954 421 VKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 421 ~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 465 (474)
.++++|++.+++|++++++.+. +|+|+.++++|++.|..+..+.
T Consensus 632 ~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 632 LKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999986 5999999999999999987544
No 22
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=5.3e-41 Score=329.09 Aligned_cols=347 Identities=22% Similarity=0.268 Sum_probs=252.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccce--eeee-------hhc----
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGV--QVLS-------AKG---- 141 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~---- 141 (474)
||||++++++..||+++++.+|+++|.++||+|+++|...+.... .......++ .+.. ...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC------FEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc------chhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 789999999989999999999999999999999999964322110 000000001 1100 000
Q ss_pred ---HH--------HHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccc------cchhhh--------
Q 011954 142 ---EK--------AINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGH------YFKLEY-------- 196 (474)
Q Consensus 142 ---~~--------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~------~~~~~~-------- 196 (474)
.+ .+....++|+||+++...+..+..... . .++++++|..... .....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~----~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLFS----P--SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHhc----C--CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 00 023447999999987554433222111 1 5788888843211 001011
Q ss_pred hhcccccccccccccccHHHHHHhHHHHhcCC-CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEE
Q 011954 197 VKHLPFVAGAMIDSYTTAEYWKNRTRERLGIR-MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAI 275 (474)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 275 (474)
...++.++.+++.|..+.+.+. +.++.. ..++.||+||+|.+.+.+.... ..++....+++.+++++
T Consensus 149 ~~~~~~ad~ii~~s~~~~~~~~----~~~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~ 216 (392)
T cd03805 149 EFTTGMADKIVVNSNFTASVFK----KTFPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLS 216 (392)
T ss_pred HHHhhCceEEEEcChhHHHHHH----HHhcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEE
Confidence 1123455666666666655543 334333 3334699999999888654321 12223345567799999
Q ss_pred ecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC---chHHHHHHHHHHH-cCCCCeEEEecCC--CC
Q 011954 276 INSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ---TKFETELRNFVAE-KKIQDHVHFVNKT--LT 349 (474)
Q Consensus 276 vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~---~~~~~~l~~~~~~-~~l~~~v~~~g~~--~~ 349 (474)
+||+.+.||++.+++|+.++.+... +.++++|+++|+|+... .++.+++++++++ +++.++|+|+|++ ++
T Consensus 217 ~grl~~~Kg~~~ll~a~~~l~~~~~----~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~ 292 (392)
T cd03805 217 INRFERKKNIALAIEAFAILKDKLA----EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQ 292 (392)
T ss_pred EeeecccCChHHHHHHHHHHHhhcc----cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHH
Confidence 9999999999999999999865210 01689999999986432 2356889999999 9999999999986 56
Q ss_pred hHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 011954 350 VSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVER 429 (474)
Q Consensus 350 ~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 429 (474)
+..+|+.||++++||. .|+||++++|||+||+|||+|+.||..|++.++.+|+++++ | +++++++|.+++++++.
T Consensus 293 ~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 293 KELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-T--PEEFAEAMLKLANDPDL 367 (392)
T ss_pred HHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-C--HHHHHHHHHHHHhChHH
Confidence 7899999999999998 89999999999999999999999999999999999999976 6 89999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHH
Q 011954 430 RLTMGKKGYERVKDRFLEHHMSQRI 454 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~fs~~~~~~~~ 454 (474)
+++|++++++++.++|||+.+++++
T Consensus 368 ~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 368 ADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999999998764
No 23
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1.7e-40 Score=321.13 Aligned_cols=336 Identities=21% Similarity=0.248 Sum_probs=256.5
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeee--------------ehhcHHHHhh
Q 011954 82 HELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVL--------------SAKGEKAINT 147 (474)
Q Consensus 82 ~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 147 (474)
+.+..||+++++.+++++|.++||+|.+++....... .+...++.+. .......+..
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGRLVA---------ELEAEGSRHIKLPFISKNPLRILLNVARLRRLIR 75 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH---------HHHhcCCeEEEccccccchhhhHHHHHHHHHHHH
Confidence 4566799999999999999999999999986532211 1111111111 1122334556
Q ss_pred hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcC
Q 011954 148 ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGI 227 (474)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (474)
..+||+||+|+............ . ...|+++++|+...... .+...+...+.+++.|....+. +.+.+++
T Consensus 76 ~~~~dii~~~~~~~~~~~~~~~~-~---~~~~~i~~~h~~~~~~~--~~~~~~~~~~~vi~~s~~~~~~----~~~~~~~ 145 (355)
T cd03819 76 EEKVDIVHARSRAPAWSAYLAAR-R---TRPPFVTTVHGFYSVNF--RYNAIMARGDRVIAVSNFIADH----IRENYGV 145 (355)
T ss_pred HcCCCEEEECCCchhHHHHHHHH-h---cCCCEEEEeCCchhhHH--HHHHHHHhcCEEEEeCHHHHHH----HHHhcCC
Confidence 68999999998654332222111 1 24688999997643221 2333345566666655555444 4456788
Q ss_pred CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC
Q 011954 228 RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307 (474)
Q Consensus 228 ~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (474)
+..++.+||||+|.+.+.+..... .....++++++.+++.++++++||+.+.||++.+++++..+.+ +.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~~ 215 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DDP 215 (355)
T ss_pred ChhhEEEecCCccccccCccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cCC
Confidence 888999999999999886543221 1122367788888888999999999999999999999998865 347
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEE
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLG 387 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~ 387 (474)
+++|+|+|+++... .+.+.+.+.+.++++.++|.|+|+.+++.++|+.||++++||.. .|++|++++|||+||+|||+
T Consensus 216 ~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~-~e~~~~~l~EA~a~G~PvI~ 293 (355)
T cd03819 216 DVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE-PEAFGRTAVEAQAMGRPVIA 293 (355)
T ss_pred CeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCC-CCCCchHHHHHHhcCCCEEE
Confidence 89999999986432 35566777888999989999999999999999999999999942 89999999999999999999
Q ss_pred cCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHH
Q 011954 388 TAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHM 450 (474)
Q Consensus 388 s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~ 450 (474)
++.||..|++.++.+|++++++| +++++++|..++. +++.++++++++++.+.++|+|+.+
T Consensus 294 ~~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 294 SDHGGARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred cCCCCcHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999999988999999988 9999999975555 8999999999999999999999864
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=3.3e-40 Score=319.34 Aligned_cols=345 Identities=25% Similarity=0.307 Sum_probs=264.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee------------hhcHH
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS------------AKGEK 143 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 143 (474)
||+++.+.+.+||+++++..|+++|.+.|++|.+++........ ..+...++.+.. .....
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~-------~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELG-------EELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhh-------HHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 69999999999999999999999999999999999865332211 111112222211 12234
Q ss_pred HHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc---chhhhh----hcccccccccccccccHHH
Q 011954 144 AINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY---FKLEYV----KHLPFVAGAMIDSYTTAEY 216 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~---~~~~~~----~~~~~~~~~~~~s~~~~~~ 216 (474)
.+.+..+||+||++......+...... .. ..++++++.|+..... ...... ......+..++.+....+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~-~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 150 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAAR-LA--GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY 150 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHH-hc--CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH
Confidence 455568999999986544332222111 11 2367888899865442 111111 1122333334444433333
Q ss_pred HHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHH
Q 011954 217 WKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESL 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~ 296 (474)
+. .++++..++.+++||+|...+.+.... ....+++++++++.++++++|++.+.||++.+++++.++.
T Consensus 151 ----~~-~~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 151 ----HQ-AIGYPPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred ----HH-HcCCChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 32 337777899999999999877654332 3456778899888999999999999999999999999886
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH-HcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA-EKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+ +.++++|+++|.++ ....++.... ++++.+++.++|..+++..+|+.||++++||. .|++|+++
T Consensus 220 ~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~ 285 (365)
T cd03807 220 K-------KFPNARLLLVGDGP-----DRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVL 285 (365)
T ss_pred H-------hCCCeEEEEecCCc-----chhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHH
Confidence 6 34889999999986 4455566665 88888999999999999999999999999999 79999999
Q ss_pred HHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011954 376 IEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIA 455 (474)
Q Consensus 376 ~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 455 (474)
+|||+||+|||+++.|+..|++.+ +|++++++| +++++++|..++++++.+.++++++++++.++|||+.+++++.
T Consensus 286 ~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (365)
T cd03807 286 LEAMACGLPVVATDVGDNAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE 361 (365)
T ss_pred HHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999966 899999988 9999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011954 456 LVLR 459 (474)
Q Consensus 456 ~~~~ 459 (474)
++|+
T Consensus 362 ~~y~ 365 (365)
T cd03807 362 ELYR 365 (365)
T ss_pred HHhC
Confidence 9984
No 25
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=7.3e-40 Score=329.83 Aligned_cols=371 Identities=17% Similarity=0.208 Sum_probs=251.4
Q ss_pred ccCEEEEEecCCC-----------CCChhHHHHHHHHHH--------HhcCc----EEEEEeCCCCCCchh-hhhhcccc
Q 011954 73 KSKLVLLVSHELS-----------LSGGPLLLMELAFLL--------RGVGA----EVVWITNQKPNEPDE-VIYSLEHK 128 (474)
Q Consensus 73 ~~~kIl~v~~~~~-----------~gG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~-~~~~~~~~ 128 (474)
|.|||++++.... .||...++.+++++| +++|| +|+|+|...++.... ....+...
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc
Confidence 5689999997752 155568999999975 68999 778999654322110 00000111
Q ss_pred hhccceeeeehh---------------------------c-HHHHhh--hcCCCEEEEcccchhhHHhHHhhhccccccc
Q 011954 129 MLDRGVQVLSAK---------------------------G-EKAINT--ALNADLVVLNTAVAGKWLDGVLKDKVSQVLP 178 (474)
Q Consensus 129 ~~~~~~~~~~~~---------------------------~-~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~ 178 (474)
-...++.+.+.+ . ...+.. ..+||+||+|.+..+... ..++.. ...
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva-~lla~~---lgV 409 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA-SLLARK---LGV 409 (784)
T ss_pred cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH-HHHHHh---cCC
Confidence 111222221110 0 011111 247999999986665544 333332 245
Q ss_pred ceeeeeecccccc-------ch---hhh---------hhcccccccccccccccHHHHHHhHH-----------HHh---
Q 011954 179 KVLWWIHEMRGHY-------FK---LEY---------VKHLPFVAGAMIDSYTTAEYWKNRTR-----------ERL--- 225 (474)
Q Consensus 179 ~~v~~~h~~~~~~-------~~---~~~---------~~~~~~~~~~~~~s~~~~~~~~~~~~-----------~~~--- 225 (474)
|.+.+.|...... +. ..+ ...+..++.+++.+..-.....+.+. ..+
T Consensus 410 P~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vv 489 (784)
T TIGR02470 410 TQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVV 489 (784)
T ss_pred CEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeee
Confidence 7788888642110 00 000 12223445555555311010001100 011
Q ss_pred -cC--CCCCeEEEeCCCCccccchhhhhHHHH-----------HhHHHHHHhcCC--CCCCEEEEEecccccCcchHHHH
Q 011954 226 -GI--RMPETYVVHLGNSKDLMDIAEDSVARR-----------VLREHVRESLGV--RDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 226 -~~--~~~ki~vi~ngvd~~~~~~~~~~~~~~-----------~~~~~~r~~~~~--~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
|+ ..+|+.|||+|+|.+.|.|......+. ..+.+.++.+|+ +.++++|+++||+.+.||++.++
T Consensus 490 nGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LI 569 (784)
T TIGR02470 490 HGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLV 569 (784)
T ss_pred cCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHH
Confidence 22 457999999999999887654321110 011234566775 56778999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCc----Cc---hHHHHHHHHHHHcCCCCeEEEecCC---CChHHHHh----
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNA----QT---KFETELRNFVAEKKIQDHVHFVNKT---LTVSPYLA---- 355 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~----~~---~~~~~l~~~~~~~~l~~~v~~~g~~---~~~~~~~~---- 355 (474)
+|+.++.+ ..++++|+|+|++... +. +..+++.++++++++.++|.|+|++ .++.++|.
T Consensus 570 eA~~~l~~-------l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd 642 (784)
T TIGR02470 570 ECYGRSPK-------LRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIAD 642 (784)
T ss_pred HHHHHhHh-------hCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhc
Confidence 99987643 1257899999987531 11 1346788899999999999999964 45566664
Q ss_pred cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHh----hCHHHHH
Q 011954 356 SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA----THVERRL 431 (474)
Q Consensus 356 ~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~~ 431 (474)
.+|+||+||. +|+||++++|||+||+|||+|++||+.|+|.++.+|+++++.| +++++++|.+++ +|++.++
T Consensus 643 ~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kll~dp~~~~ 718 (784)
T TIGR02470 643 TKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKCDEDPSYWQ 718 (784)
T ss_pred cCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHH
Confidence 3579999998 9999999999999999999999999999999999999999999 999999999876 5999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 432 TMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 432 ~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
+|+++|++++.++|||+.++++++++.
T Consensus 719 ~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 719 KISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 26
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=4.6e-40 Score=330.00 Aligned_cols=364 Identities=19% Similarity=0.170 Sum_probs=259.7
Q ss_pred EEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc------------------chhccc
Q 011954 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH------------------KMLDRG 133 (474)
Q Consensus 76 kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~------------------~~~~~~ 133 (474)
|||+++++..| ||.+.++..|+++|+++||+|.|+++.++............ .....+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 59999998544 88899999999999999999999997665432211000000 001112
Q ss_pred eeeeehh------------------------------cHHHHhh--hcCCCEEEEcccchhhHHhHHhhhcc--cccccc
Q 011954 134 VQVLSAK------------------------------GEKAINT--ALNADLVVLNTAVAGKWLDGVLKDKV--SQVLPK 179 (474)
Q Consensus 134 ~~~~~~~------------------------------~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~--~~~~~~ 179 (474)
+.++... ....+.. ..+||+||+|+..++.....+..... .....|
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 2222110 0111222 27999999998665544333322210 112468
Q ss_pred eeeeeecccccc-chh--------------------------hhhhcccccccccccccccHHHHHHh-----HHHHhcC
Q 011954 180 VLWWIHEMRGHY-FKL--------------------------EYVKHLPFVAGAMIDSYTTAEYWKNR-----TRERLGI 227 (474)
Q Consensus 180 ~v~~~h~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~ 227 (474)
+++++|+..... +.. .....+..++.++++|....+.+... +...+..
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 999999863211 000 01112345566667776665554421 1112333
Q ss_pred CCCCeEEEeCCCCccccchhhhhH-----------HHHHhHHHHHHhcCCC--CCCEEEEEecccccCcchHHHHHHHHH
Q 011954 228 RMPETYVVHLGNSKDLMDIAEDSV-----------ARRVLREHVRESLGVR--DDDLLFAIINSVSRGKGQDLFLHSFYE 294 (474)
Q Consensus 228 ~~~ki~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~--~~~~~i~~vgrl~~~Kg~~~ll~a~~~ 294 (474)
...++.+|+||+|.+.|.+..+.. .+...+..+++++|++ ++.++|+++||+.++||++.+++++.+
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 568999999999999988754332 1234467789999985 677999999999999999999999998
Q ss_pred HHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-CC-CChHHHHhcCCEEEEcCCCCCCCCc
Q 011954 295 SLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-KT-LTVSPYLASIDVLVQNSQARGECFG 372 (474)
Q Consensus 295 l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~-~~~~~~~~~adv~v~ps~~~~E~~~ 372 (474)
+.+ .+++|+|+|+|+. ++.+.++++++++ .+++.+.+ +. +.+..+|+.||++|+||. .|+||
T Consensus 321 l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~g 384 (476)
T cd03791 321 LLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCG 384 (476)
T ss_pred HHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCc
Confidence 865 4599999999842 2567777777776 35777654 44 445789999999999999 89999
Q ss_pred hHHHHHHhcCCCEEEcCCCCcceeeeeCC------ceeeecCCCCChHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHH
Q 011954 373 RITIEAMAFQLPVLGTAAGGTMEIVVNGT------TGLLHPTGKEGVTPLANNIVKLAT---HVERRLTMGKKGYERVKD 443 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~~e~v~~~~------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~~~~~~~~ 443 (474)
++++|||+||+|||++++||+.|++.++. +|+++++.| +++++++|.++++ +++.+.+|++++++ +
T Consensus 385 l~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~ 459 (476)
T cd03791 385 LTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRRALALYRDPEAWRKLQRNAMA---Q 459 (476)
T ss_pred HHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---c
Confidence 99999999999999999999999999987 999999998 9999999999875 67777887777654 5
Q ss_pred hcCHHHHHHHHHHHHHH
Q 011954 444 RFLEHHMSQRIALVLRE 460 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~~~ 460 (474)
.|||+.++++|+++|++
T Consensus 460 ~fsw~~~a~~~~~~y~~ 476 (476)
T cd03791 460 DFSWDRSAKEYLELYRS 476 (476)
T ss_pred CCChHHHHHHHHHHHhC
Confidence 69999999999999963
No 27
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=4e-40 Score=317.89 Aligned_cols=342 Identities=13% Similarity=0.164 Sum_probs=244.9
Q ss_pred CEEEEEecCCC-CCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcc--cchhccceee----eehhcHHHH
Q 011954 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLE--HKMLDRGVQV----LSAKGEKAI 145 (474)
Q Consensus 75 ~kIl~v~~~~~-~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~ 145 (474)
|||+++++.++ .||+|+++.+++++|.+. ||+|.+++.......... ..+. .......+.. .....+.++
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWL-KEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHH-HhcchhcccccchhhhhcccHHHHHHHHH
Confidence 79999998754 499999999999999999 899999986544221110 0011 0000011110 112344566
Q ss_pred hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHh
Q 011954 146 NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERL 225 (474)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (474)
.+..+||+||+|++.+..+... ..... ....+++.+.|......... ....+...+.+++.|..+.+.+. .+
T Consensus 80 l~~~~~Dii~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~h~~~~~~~~~-~~~~~~~~d~~i~~S~~~~~~~~-----~~ 151 (359)
T PRK09922 80 LKETQPDIVICIDVISCLYANK-ARKKS-GKQFKIFSWPHFSLDHKKHA-ECKKITCADYHLAISSGIKEQMM-----AR 151 (359)
T ss_pred HHhcCCCEEEEcCHHHHHHHHH-HHHHh-CCCCeEEEEecCcccccchh-hhhhhhcCCEEEEcCHHHHHHHH-----Hc
Confidence 7779999999998655433222 22211 11124555666432111111 11223556666666666555443 35
Q ss_pred cCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc--cCcchHHHHHHHHHHHHHHHHhc
Q 011954 226 GIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS--RGKGQDLFLHSFYESLQLIREKK 303 (474)
Q Consensus 226 ~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~--~~Kg~~~ll~a~~~l~~~~~~~~ 303 (474)
+++.+++.+||||+|.+.+..... ...++++++++||+. +.||++.+++++.++.
T Consensus 152 ~~~~~ki~vi~N~id~~~~~~~~~----------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------- 208 (359)
T PRK09922 152 GISAQRISVIYNPVEIKTIIIPPP----------------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------- 208 (359)
T ss_pred CCCHHHEEEEcCCCCHHHccCCCc----------------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC-------
Confidence 777789999999999664432110 013467899999996 4699999999998762
Q ss_pred cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC----ChHHHHhcCCEEEEcCCCCCCCCchHHHHHH
Q 011954 304 LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL----TVSPYLASIDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 304 ~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~----~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm 379 (474)
++++|+|+|+|+ ..++++++++++++.++|+|+|+++ ++.++|+.+|++|+||. .||||++++|||
T Consensus 209 ---~~~~l~ivG~g~-----~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAm 278 (359)
T PRK09922 209 ---GEWQLHIIGDGS-----DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAM 278 (359)
T ss_pred ---CCeEEEEEeCCc-----cHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHH
Confidence 479999999996 6788999999999999999999864 46777889999999999 899999999999
Q ss_pred hcCCCEEEcC-CCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 380 AFQLPVLGTA-AGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 380 a~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
|||+|||+|+ .||..|++.++.+|++++++| +++++++|.++++|++.+. .++......+|+.+.+.+++.++|
T Consensus 279 a~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 353 (359)
T PRK09922 279 SYGIPCISSDCMSGPRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLYFKNLNNAL 353 (359)
T ss_pred HcCCCEEEeCCCCChHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999 899999999999999999998 9999999999999987541 223333445588889999999999
Q ss_pred HHHHh
Q 011954 459 REVLQ 463 (474)
Q Consensus 459 ~~~~~ 463 (474)
..+++
T Consensus 354 ~~~~~ 358 (359)
T PRK09922 354 FSKLQ 358 (359)
T ss_pred HHHhc
Confidence 88764
No 28
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=6.2e-40 Score=321.02 Aligned_cols=347 Identities=18% Similarity=0.188 Sum_probs=236.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh-hh-hhcccch--hccceeeeehh-----------
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE-VI-YSLEHKM--LDRGVQVLSAK----------- 140 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~----------- 140 (474)
||||++..++. ....|+++|.++||+|+++|......... +. ..+...- ...........
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPPGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVA 75 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCCCCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHH
Confidence 59999987762 46789999999999999999765543221 00 0000000 00000000000
Q ss_pred -cHHHH-hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeee------eccccccc-----h----hhh-------
Q 011954 141 -GEKAI-NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWI------HEMRGHYF-----K----LEY------- 196 (474)
Q Consensus 141 -~~~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------h~~~~~~~-----~----~~~------- 196 (474)
....+ .+..+||+||+|..+..... ++...+. .+++.++ |+....+. . ...
T Consensus 76 ~~~~~~~~~~~~pdvi~~h~~~~~~~~---l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (396)
T cd03818 76 RALLALRAKGFRPDVIVAHPGWGETLF---LKDVWPD--APLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALI 150 (396)
T ss_pred HHHHHHHhcCCCCCEEEECCccchhhh---HHHhCCC--CCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHh
Confidence 00111 23368999999986543321 1212211 2444333 22111010 0 111
Q ss_pred hhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEe
Q 011954 197 VKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAII 276 (474)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v 276 (474)
...+..++.+++.|....+.+.. .+ ..++.|||||+|.+.|.+.... ....+....++.+.++++|+
T Consensus 151 ~~~~~~ad~vi~~s~~~~~~~~~----~~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~~~~~~~~~i~~v 217 (396)
T cd03818 151 LLALAQADAGVSPTRWQRSTFPA----EL---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGRVLTPGDEVITFV 217 (396)
T ss_pred HHHHHhCCEEECCCHHHHhhCcH----hh---ccceEEeCCCccccccCCCchh------hhcccccccCCCCCeEEEEE
Confidence 12345666667666665554432 22 3689999999999998765422 11223333455677889999
Q ss_pred cc-cccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc----hHHHHHHHHHHHcCC---CCeEEEecCC-
Q 011954 277 NS-VSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT----KFETELRNFVAEKKI---QDHVHFVNKT- 347 (474)
Q Consensus 277 gr-l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~----~~~~~l~~~~~~~~l---~~~v~~~g~~- 347 (474)
|| +.+.||++.+++|+.++.+ +.++++|+|+|++..... ......+++.++++. .++|+|+|++
T Consensus 218 gR~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~ 290 (396)
T cd03818 218 ARNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVP 290 (396)
T ss_pred CCCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCC
Confidence 98 9999999999999998865 458999999997431100 001112222333331 4789999986
Q ss_pred -CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 348 -LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 348 -~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+++..+|+.||++|+||. .|++|++++||||||+|||+|+.||+.|++.++.+|++++++| +++++++|.++++|
T Consensus 291 ~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d--~~~la~~i~~ll~~ 366 (396)
T cd03818 291 YDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFD--PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCC--HHHHHHHHHHHHhC
Confidence 689999999999999998 8999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011954 427 VERRLTMGKKGYERVKDRFLEHHMSQRIAL 456 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 456 (474)
++.+.+|++++++++.++|||+.++++|++
T Consensus 367 ~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 367 PARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 999999999999999999999999998863
No 29
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=4.3e-39 Score=312.43 Aligned_cols=330 Identities=20% Similarity=0.219 Sum_probs=249.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLV 154 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (474)
|||++++.....||+++++..++++|.++||+|++++.... .+.......++|+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 78999998777799999999999999999999999996533 12334456899999
Q ss_pred EEcccchhhHHhHHhhhcccccccceeeeeeccccccch------------------------------hhhhhcccccc
Q 011954 155 VLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK------------------------------LEYVKHLPFVA 204 (474)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------------------------------~~~~~~~~~~~ 204 (474)
|+|......+....+.... ...|+++++|+....... ..+........
T Consensus 56 h~~~~~~~~~~~~~~~~~~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLL--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWA 133 (365)
T ss_pred EEEccccCccCHHHHHHHH--cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhc
Confidence 9987443332222222111 245889999975321100 00000000010
Q ss_pred cccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccccc--C
Q 011954 205 GAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSR--G 282 (474)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~--~ 282 (474)
.........+++..+.+.+.+.++..++.++|||+|.+.+.+.. +...++.++++.+..++++.|+... .
T Consensus 134 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (365)
T cd03825 134 DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGGTDPR 205 (365)
T ss_pred cCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCCCccc
Confidence 11112233344444444444556778999999999999886543 3456777888888888877777765 8
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC---ChHHHHhcCCE
Q 011954 283 KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL---TVSPYLASIDV 359 (474)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~---~~~~~~~~adv 359 (474)
||++.+++++..+.+. ..++++++++|+++. ... .++..++.++|+.. ++..+|+.||+
T Consensus 206 K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~~-----~~~-------~~~~~~v~~~g~~~~~~~~~~~~~~ad~ 267 (365)
T cd03825 206 KGFDELIEALKRLAER------WKDDIELVVFGASDP-----EIP-------PDLPFPVHYLGSLNDDESLALIYSAADV 267 (365)
T ss_pred cCHHHHHHHHHHhhhc------cCCCeEEEEeCCCch-----hhh-------ccCCCceEecCCcCCHHHHHHHHHhCCE
Confidence 9999999999988542 137899999999851 111 14457899999864 68899999999
Q ss_pred EEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 011954 360 LVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYE 439 (474)
Q Consensus 360 ~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~ 439 (474)
+++||. .|++|++++|||+||+|||+++.||..|++.++.+|++++..| +++++++|.+++++++.+.+|++++++
T Consensus 268 ~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~ 343 (365)
T cd03825 268 FVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGEAARE 343 (365)
T ss_pred EEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999 8999999999999999999999999999999988999999988 999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 011954 440 RVKDRFLEHHMSQRIALVLREV 461 (474)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~ 461 (474)
.+.++|||+.++++|.++|+++
T Consensus 344 ~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 344 LAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999999999999863
No 30
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=4.2e-39 Score=311.73 Aligned_cols=329 Identities=17% Similarity=0.169 Sum_probs=244.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee-----------hhcHHH
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS-----------AKGEKA 144 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 144 (474)
||+++++.+..||+++++.+++++|.+.||+|++++........ .......++.++. ......
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDY------DDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcch------HHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 69999998888999999999999999999999999965443211 1111122222221 112333
Q ss_pred HhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch--hh------hhhcccccccccccccccHHH
Q 011954 145 INTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK--LE------YVKHLPFVAGAMIDSYTTAEY 216 (474)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--~~------~~~~~~~~~~~~~~s~~~~~~ 216 (474)
+....+||+||+|+.....+....... . ..+.++.+.|........ .. ........+..++.+....+.
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKK-A--GVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhh-C--CCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 445689999999987643333322221 1 123456667764322111 11 111223445555555554444
Q ss_pred HHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHH
Q 011954 217 WKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESL 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~ 296 (474)
+.. . ....++.+||||+|.+.+.+.... +.. ++..+...++++|+++||+.+.||++.+++|+..+.
T Consensus 152 ~~~----~--~~~~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 152 LFG----K--VKNKKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred HHh----C--CCcccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 332 2 456789999999999887654322 112 556677788899999999999999999999999987
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
+ ++++++++|+|+|+ ....+++.++++++.++|.|+|+.+++.++|+.||++|+||. .|++|++++
T Consensus 219 ~-------~~~~~~l~ivG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~l 284 (358)
T cd03812 219 K-------KNPNAKLLLVGDGE-----LEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVLI 284 (358)
T ss_pred H-------hCCCeEEEEEeCCc-----hHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHHH
Confidence 6 45899999999996 678899999999999999999999999999999999999999 899999999
Q ss_pred HHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 377 EAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
|||++|+|||+|+.||..|++.+ ..|++..+++ +++++++|.++++|++.++.++..+......
T Consensus 285 EAma~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 285 EAQASGLPCILSDTITKEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGLDA 348 (358)
T ss_pred HHHHhCCCEEEEcCCchhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccchh
Confidence 99999999999999999999977 5677776666 8999999999999999999998887766554
No 31
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=3.3e-39 Score=313.58 Aligned_cols=338 Identities=20% Similarity=0.207 Sum_probs=251.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh--hhhcccc---hhc-----cceeeeehhcHHHH
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV--IYSLEHK---MLD-----RGVQVLSAKGEKAI 145 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~---~~~-----~~~~~~~~~~~~~~ 145 (474)
||+++.+.+.++ +++++.++++.|. |++|++++.......... ....... ... .............+
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRL 77 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHH
Confidence 478888876665 6899999999995 788888875433221110 0000000 000 00001111223345
Q ss_pred hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch------------hhhhhccccccccccccccc
Q 011954 146 NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK------------LEYVKHLPFVAGAMIDSYTT 213 (474)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~ 213 (474)
.+..+||+||+|....+.......+. ...|++++.|+....... ......++.++.+++.+...
T Consensus 78 ~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 153 (367)
T cd05844 78 LRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFI 153 (367)
T ss_pred HHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHH
Confidence 66789999999976554443333222 346888888864321111 11122234556666666555
Q ss_pred HHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHH
Q 011954 214 AEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFY 293 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~ 293 (474)
.+.+. .++++..++.+++||+|.+.+.+... ..++.+++++|++.+.||++.+++|+.
T Consensus 154 ~~~~~-----~~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~K~~~~li~a~~ 211 (367)
T cd05844 154 RDRLL-----ALGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEKKGPLLLLEAFA 211 (367)
T ss_pred HHHHH-----HcCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccccChHHHHHHHH
Confidence 44443 23777788999999999887764321 245678999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC----C
Q 011954 294 ESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA----R 367 (474)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~----~ 367 (474)
.+.+ ++++++|+|+|+|+ +.++++++++++++.++|+|+|++ +++..+|+.||++|+||.+ .
T Consensus 212 ~l~~-------~~~~~~l~ivG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~ 279 (367)
T cd05844 212 RLAR-------RVPEVRLVIIGDGP-----LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGD 279 (367)
T ss_pred HHHH-------hCCCeEEEEEeCch-----HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCC
Confidence 8865 44899999999985 778899999999999999999986 6799999999999999963 1
Q ss_pred CCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 011954 368 GECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLE 447 (474)
Q Consensus 368 ~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~ 447 (474)
.||+|++++|||+||+|||+++.+|..|++.++.+|++++++| +++++++|.++++|++.+++|++++++++.++|||
T Consensus 280 ~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 357 (367)
T cd05844 280 AEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARMGAAGRRRVEERFDL 357 (367)
T ss_pred ccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCH
Confidence 4999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011954 448 HHMSQRIAL 456 (474)
Q Consensus 448 ~~~~~~~~~ 456 (474)
+.+++++.+
T Consensus 358 ~~~~~~l~~ 366 (367)
T cd05844 358 RRQTAKLEA 366 (367)
T ss_pred HHHHHHHhc
Confidence 999999875
No 32
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.2e-38 Score=313.17 Aligned_cols=337 Identities=23% Similarity=0.254 Sum_probs=248.8
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh---------------------hcHHHH
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA---------------------KGEKAI 145 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 145 (474)
||+++++.+|+++|+++||+|+|++........... ....++.+... ......
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV------ELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRF 94 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc------ccccceEEEecccccccCCChhhcchhHHHHHHHHHHH
Confidence 788999999999999999999999954332211100 00111111110 011122
Q ss_pred hhhc--CCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh--------------hhhhccccccccccc
Q 011954 146 NTAL--NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL--------------EYVKHLPFVAGAMID 209 (474)
Q Consensus 146 ~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~--------------~~~~~~~~~~~~~~~ 209 (474)
.... +||+||+|....+........ . ...|++++.|+........ .....+...+.+++.
T Consensus 95 ~~~~~~~~Div~~~~~~~~~~~~~~~~-~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 170 (398)
T cd03800 95 LRREGGRPDLIHAHYWDSGLVALLLAR-R---LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIAS 170 (398)
T ss_pred HHhcCCCccEEEEecCccchHHHHHHh-h---cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEc
Confidence 2334 999999997554433222221 1 2357888888753211110 011223345555555
Q ss_pred ccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 210 SYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
+....+. +.+.++....++.+||||+|.+.+.+.... ...++.++.+.++++|+++||+.+.||++.++
T Consensus 171 s~~~~~~----~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll 239 (398)
T cd03800 171 TPQEAEE----LYSLYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGRLDPRKGIDTLI 239 (398)
T ss_pred CHHHHHH----HHHHccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcccccccCHHHHH
Confidence 5444333 444455556679999999999888655422 11245556667789999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCch-HHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTK-FETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~-~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~ 366 (474)
+++..+.+ +.++++|+++|+++..... ....++++++++++.+++.|+|++ +++..+|+.||++++||.
T Consensus 240 ~a~~~l~~-------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~- 311 (398)
T cd03800 240 RAYAELPE-------LRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPAL- 311 (398)
T ss_pred HHHHHHHH-------hCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccc-
Confidence 99998865 3478999999998643322 345678888999999999999985 689999999999999998
Q ss_pred CCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 011954 367 RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 367 ~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs 446 (474)
.|++|++++|||++|+|||+++.+|..|++.++++|++++++| +++++++|.+++++++.+++|++++++++.++||
T Consensus 312 -~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s 388 (398)
T cd03800 312 -YEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRLSRAGLRRARARYT 388 (398)
T ss_pred -ccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999998 9999999999999999999999999999989999
Q ss_pred HHHHHHHHH
Q 011954 447 EHHMSQRIA 455 (474)
Q Consensus 447 ~~~~~~~~~ 455 (474)
|+.++++|+
T Consensus 389 ~~~~~~~~~ 397 (398)
T cd03800 389 WERVAARLL 397 (398)
T ss_pred HHHHHHHHh
Confidence 999999886
No 33
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=5.4e-39 Score=308.07 Aligned_cols=321 Identities=17% Similarity=0.120 Sum_probs=230.9
Q ss_pred CEEEEEecCC------CCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhc--cce---eeeehhcHH
Q 011954 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLD--RGV---QVLSAKGEK 143 (474)
Q Consensus 75 ~kIl~v~~~~------~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~ 143 (474)
|||+++++.+ ..||+++++.+|+++|.+.||+|++++...+................ ... .........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 7999999876 34888999999999999999999999966543221110000000000 000 001112334
Q ss_pred HHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHH
Q 011954 144 AINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRE 223 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (474)
.+.+..+||+||+|+.....+ . . .....|++++.|+........ ........+..++.+....+.+.
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~--~-~----~~~~~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~----- 147 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP--F-A----RPLPVPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWP----- 147 (335)
T ss_pred HHHhcCCCCEEEecCcccchh--h-h----cccCCCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhcc-----
Confidence 555678999999998766554 1 1 113358899999775433322 22222333334444433333221
Q ss_pred HhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhc
Q 011954 224 RLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKK 303 (474)
Q Consensus 224 ~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (474)
...++.+||||+|.+.|.+.. .++..++++||+.+.||++.+++++++
T Consensus 148 ----~~~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~--------- 195 (335)
T cd03802 148 ----PLPWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIRAARR--------- 195 (335)
T ss_pred ----cccccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHHHHHh---------
Confidence 116899999999998876421 345678899999999999999998753
Q ss_pred cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC-CCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh
Q 011954 304 LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKK-IQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMA 380 (474)
Q Consensus 304 ~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma 380 (474)
.+++|+|+|+|+ ....+.....+.. +.++|+|+|+. +++..+|+.+|++|+||.+ .|+||++++|||+
T Consensus 196 ---~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~-~E~~~~~~lEAma 266 (335)
T cd03802 196 ---AGIPLKLAGPVS-----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILW-EEPFGLVMIEAMA 266 (335)
T ss_pred ---cCCeEEEEeCCC-----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcc-cCCcchHHHHHHh
Confidence 578999999986 3444444444443 56899999986 5678999999999999984 6999999999999
Q ss_pred cCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 381 FQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
||+|||+++.||..|++.++.+|+++++ +++++++|.++.+.+ .+++++.+.++|||+.++++|+++|+
T Consensus 267 ~G~PvI~~~~~~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 267 CGTPVIAFRRGAVPEVVEDGVTGFLVDS----VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred cCCCEEEeCCCCchhheeCCCcEEEeCC----HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999986 799999999986543 35677888899999999999999984
No 34
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.9e-38 Score=306.48 Aligned_cols=354 Identities=19% Similarity=0.164 Sum_probs=252.0
Q ss_pred EEEEEecCCC-CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEE
Q 011954 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLV 154 (474)
Q Consensus 76 kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (474)
||+|+++..+ .||.++++.+|+++|.+.||+|.+++...................................+..+||+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 6999999877 488899999999999999999999985443221111100000000000111122234455667899999
Q ss_pred EEcccch--hhHHhHHhhhcccccccceeeeeeccccccc----hhhhhhcccccccccccccccHHHHHHhHHHHhcCC
Q 011954 155 VLNTAVA--GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF----KLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIR 228 (474)
Q Consensus 155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (474)
|++.... +................++++++|+...... .......++.++.+++.| .+..++... .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~-~~--~ 154 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLL-RA--Y 154 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHh-hc--C
Confidence 9976211 1111111111111234689999998621111 112233456677777775 233232221 11 1
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS 308 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (474)
..++.+||||++...+..... .+....+.+.++++++|++.+.||++.+++|+.++.+ ++++
T Consensus 155 ~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~-------~~~~ 216 (366)
T cd03822 155 PEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA-------KHPD 216 (366)
T ss_pred CCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh-------hCCC
Confidence 478999999999877654321 0233345677899999999999999999999998866 4489
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC---CCChHHHHhcCCEEEEcCCCCCC--CCchHHHHHHhcCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK---TLTVSPYLASIDVLVQNSQARGE--CFGRITIEAMAFQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---~~~~~~~~~~adv~v~ps~~~~E--~~~~~~~EAma~G~ 383 (474)
++|+|+|++............++++++++.++|.|+|. .+++.++|+.||++++||. .| ++|++++|||+||+
T Consensus 217 ~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~Ea~a~G~ 294 (366)
T cd03822 217 VRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLAYAIGFGK 294 (366)
T ss_pred eEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHHHHHHcCC
Confidence 99999999863221111111134788899999999986 4789999999999999999 78 99999999999999
Q ss_pred CEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 384 PVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 384 PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
|||+++.|+ .+.+.++.+|++++++| +++++++|..+++|++.+.+|++++++++.+ |||+.+++++.++|+
T Consensus 295 PvI~~~~~~-~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 295 PVISTPVGH-AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred CEEecCCCC-hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 999999999 77777888999999998 9999999999999999999999999999988 999999999999874
No 35
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.4e-38 Score=309.85 Aligned_cols=354 Identities=18% Similarity=0.157 Sum_probs=249.0
Q ss_pred cCEEEEEecCCCCC-ChhHHHHHHHHHHHhcCc--EEEEEeCCCCCCchhh----hhhcccchhccceeeeeh-------
Q 011954 74 SKLVLLVSHELSLS-GGPLLLMELAFLLRGVGA--EVVWITNQKPNEPDEV----IYSLEHKMLDRGVQVLSA------- 139 (474)
Q Consensus 74 ~~kIl~v~~~~~~g-G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------- 139 (474)
+++|+|++++.+.| |+||++.+.+.+|++.|+ +|.+.|.+.+....+. ...+.-.+. ....++..
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~-~~~~~v~l~~~~~~~ 111 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELL-SPPKVVHLRKRKWIE 111 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecC-CCceEEEeccccccc
Confidence 46799999999886 889999999999999998 7888886644433331 111111111 01111111
Q ss_pred ----h----------cH---HHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc-----------
Q 011954 140 ----K----------GE---KAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY----------- 191 (474)
Q Consensus 140 ----~----------~~---~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----------- 191 (474)
. .. ........|| |++.+.....++.. ++ . ...+++.++|......
T Consensus 112 ~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~pl-~~-~---~~~~v~~yvH~p~~~~dm~~~v~~~~~ 185 (463)
T PLN02949 112 EETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYPL-AR-L---FGCKVVCYTHYPTISSDMISRVRDRSS 185 (463)
T ss_pred cccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHHH-HH-h---cCCcEEEEEeCCcchHHHHHHHhhccc
Confidence 0 00 0111123454 55555332211111 11 1 1368999999542110
Q ss_pred ----------------chhhhhhc--------ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchh
Q 011954 192 ----------------FKLEYVKH--------LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIA 247 (474)
Q Consensus 192 ----------------~~~~~~~~--------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~ 247 (474)
.+..+.+. ...++.++++|..+.+.+. +.++. ..++.+++||+|.+.+...
T Consensus 186 ~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~----~~~~~-~~~i~vvyp~vd~~~~~~~ 260 (463)
T PLN02949 186 MYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIE----ALWRI-PERIKRVYPPCDTSGLQAL 260 (463)
T ss_pred ccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHH----HHcCC-CCCeEEEcCCCCHHHcccC
Confidence 00001111 1445566666666655543 33443 3578999999997755321
Q ss_pred hhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc-CchHHH
Q 011954 248 EDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA-QTKFET 326 (474)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~-~~~~~~ 326 (474)
+.. .+.+...++++||+.++||++.+|+|++++.+.+.+ +.++++|+|+|+++.. +.++.+
T Consensus 261 ~~~---------------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~~ 322 (463)
T PLN02949 261 PLE---------------RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERLQ 322 (463)
T ss_pred Ccc---------------ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHHH
Confidence 100 013456788999999999999999999988664432 2378999999998532 223568
Q ss_pred HHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc-ceeeee---C
Q 011954 327 ELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT-MEIVVN---G 400 (474)
Q Consensus 327 ~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~-~e~v~~---~ 400 (474)
+++++++++++.++|+|+|+. +++.++|+.||++|+||. .|+||++++|||++|+|||+++.||. .|++.+ +
T Consensus 323 eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g 400 (463)
T PLN02949 323 KLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQ 400 (463)
T ss_pred HHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCC
Confidence 899999999999999999986 789999999999999998 89999999999999999999999997 478765 5
Q ss_pred CceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 401 TTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 401 ~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
.+|++++ | +++++++|.++++ +++.+++|++++++++. +|||+++++++.+.|+++++.
T Consensus 401 ~tG~l~~--~--~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~-~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 401 QTGFLAT--T--VEEYADAILEVLRMRETERLEIAAAARKRAN-RFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred cccccCC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHhh
Confidence 6899985 5 9999999999998 67889999999999985 599999999999999998865
No 36
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=6.4e-39 Score=311.13 Aligned_cols=338 Identities=12% Similarity=0.070 Sum_probs=224.1
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh-hhhccc-------------chh--cccee-ee
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV-IYSLEH-------------KML--DRGVQ-VL 137 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~-------------~~~--~~~~~-~~ 137 (474)
||||++......||+|+.+.+|++.|.++||+|.++........... ...... ... ..+.. +.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999999999999999999985543222100 000000 000 00000 01
Q ss_pred ehhcHHH-HhhhcCCCEEEEcccchhhH-HhHHhh----hcccccccceeeeeecccccc-----ch--hhhh-------
Q 011954 138 SAKGEKA-INTALNADLVVLNTAVAGKW-LDGVLK----DKVSQVLPKVLWWIHEMRGHY-----FK--LEYV------- 197 (474)
Q Consensus 138 ~~~~~~~-~~~~~~~DiV~~~~~~~~~~-~~~~~~----~~~~~~~~~~v~~~h~~~~~~-----~~--~~~~------- 197 (474)
......+ +.+..+|||||+|......+ +..++. ..+.....|++|+.|+++... .. ..|.
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 1112222 32568999999997554221 111111 012223469999999976321 00 0000
Q ss_pred ------------------hc---ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHh
Q 011954 198 ------------------KH---LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVL 256 (474)
Q Consensus 198 ------------------~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~ 256 (474)
.. +..+........+.++++++.+...++ ..++.|||||+|.+.+.+.+..
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~~------ 232 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAEL------ 232 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCcccccccccc------
Confidence 00 011000011223445555555444444 4789999999997543322110
Q ss_pred HHHHHHhcCCCCCCEEEEEeccc--ccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHH
Q 011954 257 REHVRESLGVRDDDLLFAIINSV--SRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAE 334 (474)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~vgrl--~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~ 334 (474)
... ..+.++.+++++|+. .+.||++.+++|+..+. ++++|+|+|+|++. .
T Consensus 233 -~~~----~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~~-----~-------- 284 (405)
T PRK10125 233 -PPV----RETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSPF-----T-------- 284 (405)
T ss_pred -ccc----ccCCCCCEEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCcc-----c--------
Confidence 000 113466788999994 36899999999998751 57999999987421 0
Q ss_pred cCCCCeEEEecCC---CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCC
Q 011954 335 KKIQDHVHFVNKT---LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKE 411 (474)
Q Consensus 335 ~~l~~~v~~~g~~---~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~ 411 (474)
.+++.++|.. +++.++|+.+|+||+||. .|+||++++||||||+|||+|++||++|++.++ +|++++++|
T Consensus 285 ---~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d- 357 (405)
T PRK10125 285 ---AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEE- 357 (405)
T ss_pred ---ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCC-
Confidence 1468888864 568899999999999999 899999999999999999999999999999765 999999999
Q ss_pred ChHHHHHHHHHHhhCHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLT----MGKKGYERVKDRFLEHHMSQRIALVLREV 461 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~----~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 461 (474)
+++|++++ +++.+++ +.+++++++.++||++.++++|+++|+++
T Consensus 358 -~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 358 -VLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred -HHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999854 3343333 23568899999999999999999999863
No 37
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.9e-38 Score=306.80 Aligned_cols=339 Identities=20% Similarity=0.176 Sum_probs=256.9
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhh--hcccchhccceeee---ehhcHHHHhhhcC
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIY--SLEHKMLDRGVQVL---SAKGEKAINTALN 150 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 150 (474)
|||++++.++++ +++++.+++++|.+.||+|++++............ ............+. .........+..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 699999988665 78999999999999999999999654432111000 00000000000000 0111223334589
Q ss_pred CCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh--hhhhcccccccccccccccHHHHHHhHHHHhcCC
Q 011954 151 ADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL--EYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIR 228 (474)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (474)
+|+||+|.......+........ ..+++++.|+........ .....++.++.+++.+....+.+. ..++..
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~----~~~~~~ 152 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLI----RLLGCD 152 (355)
T ss_pred CCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHH----HhcCCC
Confidence 99999997644433333332221 357888888653322222 344455667777776666655544 345677
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS 308 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (474)
..++.++|||+|.+.+.+.. .....+++.|+++|++.+.||++.+++++.++.+ +.++
T Consensus 153 ~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~-------~~~~ 210 (355)
T cd03799 153 PDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD-------RGID 210 (355)
T ss_pred cccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh-------cCCC
Confidence 88999999999988876542 0123567889999999999999999999998865 3479
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCC------CCCchHHHHHHh
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARG------ECFGRITIEAMA 380 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~------E~~~~~~~EAma 380 (474)
++|+++|.++ ....+++.++++++.++|++.|+. +++..+|+.||++++||. . |++|++++|||+
T Consensus 211 ~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~~Ea~a 283 (355)
T cd03799 211 FRLDIVGDGP-----LRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVLMEAMA 283 (355)
T ss_pred eEEEEEECCc-----cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHHHHHHH
Confidence 9999999986 677889999999999999999986 789999999999999998 6 999999999999
Q ss_pred cCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011954 381 FQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQR 453 (474)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 453 (474)
+|+|||+++.|+.+|++.++.+|++++++| +++++++|.+++++++.+.+|++++++.+.++|||+.++++
T Consensus 284 ~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 284 MGLPVISTDVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred cCCCEEecCCCCcchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999988999999988 99999999999999999999999999999999999999875
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.4e-38 Score=303.81 Aligned_cols=340 Identities=24% Similarity=0.222 Sum_probs=247.6
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhc-cceee----eehhcHH-HHhh
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLD-RGVQV----LSAKGEK-AINT 147 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~-~~~~ 147 (474)
|||++++.++| ||+++++.+++++|.++||+|++++.................... ..... ....... ....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKL 80 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhc
Confidence 69999988776 888999999999999999999999965443222111100000000 00000 0000111 1134
Q ss_pred hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc------chhhhhhcccccccccccccccHHHHHHhH
Q 011954 148 ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY------FKLEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
..++|+||+|++............ ...+.+.++|+..... +.......+..++.+++.+....+.+.
T Consensus 81 ~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~--- 153 (357)
T cd03795 81 AKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSP--- 153 (357)
T ss_pred CCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHH---
Confidence 678999999987654333322221 2357778888532111 111122234455556555555444332
Q ss_pred HHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHH
Q 011954 222 RERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIRE 301 (474)
Q Consensus 222 ~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (474)
..... ..++.+||||+|.+.+.+.... .. .....+.+.++++++||+.+.||++.+++|+.++
T Consensus 154 -~~~~~-~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l------ 216 (357)
T cd03795 154 -VLRRF-RDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAAL------ 216 (357)
T ss_pred -HhcCC-ccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEecccccccCHHHHHHHHHhc------
Confidence 22333 3789999999999887654321 00 2233446778999999999999999999999876
Q ss_pred hccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHH
Q 011954 302 KKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 302 ~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm 379 (474)
.+++|+|+|+|+ ....+++.+++++..++|+|+|++ +++..+|+.||++++||.+..|++|++++|||
T Consensus 217 -----~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~ 286 (357)
T cd03795 217 -----PDAPLVIVGEGP-----LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAM 286 (357)
T ss_pred -----cCcEEEEEeCCh-----hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHH
Confidence 379999999986 678889999899999999999986 56899999999999999744699999999999
Q ss_pred hcCCCEEEcCCCCcceeeee-CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011954 380 AFQLPVLGTAAGGTMEIVVN-GTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMS 451 (474)
Q Consensus 380 a~G~PvI~s~~~g~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~ 451 (474)
++|+|||+++.++..+.+.+ +.+|++++++| +++++++|.++++|++.+++|++++++.+.++|||+.++
T Consensus 287 ~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 287 AFGKPVISTEIGTGGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HcCCCEEecCCCCchhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 99999999999999998876 89999999998 999999999999999999999999999999999999874
No 39
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=8.3e-38 Score=300.91 Aligned_cols=337 Identities=14% Similarity=0.101 Sum_probs=234.2
Q ss_pred ccCEEEEEecCCCC--CChhHHHHHHHHHHHhcC-cEEEEEeCCCCCCch----------------h--hhhhcccc-hh
Q 011954 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVG-AEVVWITNQKPNEPD----------------E--VIYSLEHK-ML 130 (474)
Q Consensus 73 ~~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~----------------~--~~~~~~~~-~~ 130 (474)
++|||++++..+.| +|.......++.+|+++| |+|+++.+..+.... + ...+.... ..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 46999999998777 888888999999999999 799999976542110 0 00000000 00
Q ss_pred ccceee--------------eehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh--
Q 011954 131 DRGVQV--------------LSAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL-- 194 (474)
Q Consensus 131 ~~~~~~--------------~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-- 194 (474)
-.++.+ .+...+...+...+||+||++++....|......... +. ..++.+.|....+|...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~-k~-~~vV~tyHT~y~~Y~~~~~ 160 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKT-KF-RLVIGIVHTNYLEYVKREK 160 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHh-cC-CcEEEEECCChHHHHHHhc
Confidence 011111 1123355666779999999999988777522222111 12 23777888744333211
Q ss_pred -----h-hh----hcc--cccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHH
Q 011954 195 -----E-YV----KHL--PFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRE 262 (474)
Q Consensus 195 -----~-~~----~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (474)
. .. .++ ..++.+++.|..+.+ +. ..+.+..+|||.+.|.+.... .++
T Consensus 161 ~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-----------~~~i~~v~GVd~~~f~~~~~~---------~~~ 219 (462)
T PLN02846 161 NGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YP-----------RSIICNVHGVNPKFLEIGKLK---------LEQ 219 (462)
T ss_pred cchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-----------hCEEecCceechhhcCCCccc---------Hhh
Confidence 0 11 111 123444455543322 11 124445689999988765321 222
Q ss_pred hcCCCCC--CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCe
Q 011954 263 SLGVRDD--DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDH 340 (474)
Q Consensus 263 ~~~~~~~--~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (474)
... +.+ ..+++|+||+.+.||++.+++|++++.+ ..++++|+|+|+|| .+++++++++++++...
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~-------~~~~~~l~ivGdGp-----~~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQK-------ELSGLEVDLYGSGE-----DSDEVKAAAEKLELDVR 286 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHh-------hCCCeEEEEECCCc-----cHHHHHHHHHhcCCcEE
Confidence 222 233 2468899999999999999999998865 34789999999997 78899999999998644
Q ss_pred EEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHH
Q 011954 341 VHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
+ |.|. .+..++|..+|+||+||. .|+||++++||||||+|||+++.++ .|++.++.+|++++ | .++++++|
T Consensus 287 v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~--~~~~a~ai 357 (462)
T PLN02846 287 V-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--D--GKGFVRAT 357 (462)
T ss_pred E-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--C--HHHHHHHH
Confidence 4 7775 456689999999999999 8999999999999999999999998 59999999999984 4 89999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 421 VKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 421 ~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
..++.++. ..++.+++ +.|||+..+++++++|+-
T Consensus 358 ~~~l~~~~--~~~~~~a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 358 LKALAEEP--APLTDAQR----HELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHccCc--hhHHHHHH----HhCCHHHHHHHHHHHhcc
Confidence 99998532 33333333 479999999999999974
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=1.4e-37 Score=302.20 Aligned_cols=349 Identities=20% Similarity=0.180 Sum_probs=249.1
Q ss_pred EEEEEecCCC--CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhc-----ccch----h-ccceeeeehhcHH
Q 011954 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSL-----EHKM----L-DRGVQVLSAKGEK 143 (474)
Q Consensus 76 kIl~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~-----~~~~----~-~~~~~~~~~~~~~ 143 (474)
||+++++.++ .||+++++.+++++|.+.||+|++++.............. .... . .....+.......
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 6999999874 4888999999999999999999999965543222111000 0000 0 0000000011122
Q ss_pred HHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc--hhhhh----------hccccccccccccc
Q 011954 144 AINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF--KLEYV----------KHLPFVAGAMIDSY 211 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--~~~~~----------~~~~~~~~~~~~s~ 211 (474)
......++|+||+|+............ ......+++++.|+....+. ...+. ..+...+.++..+.
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARA--ARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHH--HHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 223347899999997543222111111 11134578888887643332 10111 11122233333331
Q ss_pred ccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHH
Q 011954 212 TTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHS 291 (474)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a 291 (474)
. ..... .......++.++|||+|.+.+.+.... .. ++.++.+.++++++++||+.+.||++.++++
T Consensus 159 ~----~~~~~--~~~~~~~~~~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 159 Q----EAAEI--RRLGLKAPIAVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred H----HHHHH--HhhCCcccEEEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEEeCcchhcCHHHHHHH
Confidence 1 12111 123456789999999999888654321 11 6677777888999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC--ChHHHHhcCCEEEEcCCCCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL--TVSPYLASIDVLVQNSQARGE 369 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~~~~~~~~adv~v~ps~~~~E 369 (474)
+.++.+ ++++++|+++|.++. .+...++.+++++++.++|+|+|+++ ++..+|+.||++|+||. .|
T Consensus 225 ~~~l~~-------~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e 292 (375)
T cd03821 225 FAKLAE-------RFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH--SE 292 (375)
T ss_pred HHHhhh-------hcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc--cC
Confidence 998876 448999999998642 24556666678899999999999874 89999999999999999 79
Q ss_pred CCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 370 CFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 370 ~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
+||++++|||+||+|||+++.+|..|++.+ .+|++++.+ .++++++|.+++++++.++++++++++.+.++|+|+.
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVEERFSWTA 368 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999987 789888764 6999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011954 450 MSQRIAL 456 (474)
Q Consensus 450 ~~~~~~~ 456 (474)
+++++++
T Consensus 369 ~~~~~~~ 375 (375)
T cd03821 369 IAQQLLE 375 (375)
T ss_pred HHHHhhC
Confidence 9998863
No 41
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=7.5e-39 Score=283.11 Aligned_cols=341 Identities=19% Similarity=0.187 Sum_probs=262.0
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee---------------
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS--------------- 138 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 138 (474)
+|+++++.+.| ||.|.++..|++.|.+.||.|.++|..++.... -.....+..++.
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~g-------irylt~glkVyylp~~v~~n~tT~ptv 74 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVG-------IRYLTNGLKVYYLPAVVGYNQTTFPTV 74 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCccc-------eeeecCCceEEEEeeeeeecccchhhh
Confidence 58999998665 999999999999999999999999966554211 111111222211
Q ss_pred ---hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch------hhhhhccccccccccc
Q 011954 139 ---AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK------LEYVKHLPFVAGAMID 209 (474)
Q Consensus 139 ---~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------~~~~~~~~~~~~~~~~ 209 (474)
.+.++.+...++..+||.|++++...-..+..... .+-+++++-|...+.... ....-.+...++.+++
T Consensus 75 ~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hart--MGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~IcV 152 (426)
T KOG1111|consen 75 FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHART--MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICV 152 (426)
T ss_pred hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHh--cCceEEEeccccccccchhhhhhcceeeeeecCCCcEEEE
Confidence 23455666678999999999887765554444333 345889999986543221 1222334566777777
Q ss_pred ccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC-EEEEEecccccCcchHHH
Q 011954 210 SYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD-LLFAIINSVSRGKGQDLF 288 (474)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vgrl~~~Kg~~~l 288 (474)
|.+.++- ..-+-.+++.++.+|||.++.+.|.|.+.. .++.+ ..++.++|+.++||+|++
T Consensus 153 shtsken----tvlr~~L~p~kvsvIPnAv~~~~f~P~~~~---------------~~S~~i~~ivv~sRLvyrKGiDll 213 (426)
T KOG1111|consen 153 SHTSKEN----TVLRGALAPAKVSVIPNAVVTHTFTPDAAD---------------KPSADIITIVVASRLVYRKGIDLL 213 (426)
T ss_pred eecCCCc----eEEEeccCHhHeeeccceeeccccccCccc---------------cCCCCeeEEEEEeeeeeccchHHH
Confidence 7776543 233345788999999999999999986432 12333 788899999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC
Q 011954 289 LHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~ 366 (474)
++++.++.+ ++|+++|+|+|+|| .+..+++..+++.++++|.++|.. +++.+.|...|+|++||.
T Consensus 214 ~~iIp~vc~-------~~p~vrfii~GDGP-----k~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl- 280 (426)
T KOG1111|consen 214 LEIIPSVCD-------KHPEVRFIIIGDGP-----KRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL- 280 (426)
T ss_pred HHHHHHHHh-------cCCCeeEEEecCCc-----ccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH-
Confidence 999999987 77999999999998 788899999999999999999964 889999999999999999
Q ss_pred CCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 011954 367 RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 367 ~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs 446 (474)
.|.|+++++|||+||+|||+|++||++|++.++ .-++.+++ ++++++++++.+..-. ..-+...+++.+.|+
T Consensus 281 -TEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~~---~~dl~~~v~~ai~~~~---~~p~~~h~~v~~~y~ 352 (426)
T KOG1111|consen 281 -TEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEPG---PDDLVGAVEKAITKLR---TLPLEFHDRVKKMYS 352 (426)
T ss_pred -HHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCCC---hHHHHHHHHHHHHHhc---cCchhHHHHHHHhcc
Confidence 999999999999999999999999999999554 23333443 7889988888876321 113445667888899
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 011954 447 EHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~ 465 (474)
|+.++++.+++|.++...+
T Consensus 353 w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 353 WKDVAERTEKVYDRAATTS 371 (426)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998754
No 42
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.4e-37 Score=313.35 Aligned_cols=219 Identities=18% Similarity=0.257 Sum_probs=176.7
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHH-----------HhHHHHHHhcCC--CCCCEEEEEecccccCcchHHHHHHHHHH
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARR-----------VLREHVRESLGV--RDDDLLFAIINSVSRGKGQDLFLHSFYES 295 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~-----------~~~~~~r~~~~~--~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l 295 (474)
.+++.||++|+|...|.|......+. ......++.+|+ +.++++|+++||+.+.||++.+++|++++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 56899999999999887543211000 001123445665 44567899999999999999999999887
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCC-c---Cch---HHHHHHHHHHHcCCCCeEEEecCC------CChHHHHh-cCCEEE
Q 011954 296 LQLIREKKLQVPSMHAVVVGSDMN-A---QTK---FETELRNFVAEKKIQDHVHFVNKT------LTVSPYLA-SIDVLV 361 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~l~i~G~g~~-~---~~~---~~~~l~~~~~~~~l~~~v~~~g~~------~~~~~~~~-~adv~v 361 (474)
.+ ..++++|+|+|++.+ . ..+ ...++.++++++++.++|.|+|.+ +++..+++ .+|+||
T Consensus 599 ~~-------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfV 671 (815)
T PLN00142 599 KR-------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFV 671 (815)
T ss_pred HH-------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEE
Confidence 54 236799999998731 1 111 124678889999999999999963 23455555 579999
Q ss_pred EcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHH----hhCHHHHHHHHHHH
Q 011954 362 QNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKL----ATHVERRLTMGKKG 437 (474)
Q Consensus 362 ~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l----l~~~~~~~~~~~~~ 437 (474)
+||. +|+||++++||||||+|||+|++||+.|+|.++.+|++++++| +++++++|.++ +.|++.+++|+++|
T Consensus 672 lPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 672 QPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred eCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999 99999998765 46999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 011954 438 YERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~ 458 (474)
++++.++|||+.++++++++.
T Consensus 748 r~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 748 LQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998865
No 43
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=3.2e-37 Score=296.30 Aligned_cols=329 Identities=22% Similarity=0.235 Sum_probs=250.7
Q ss_pred EEEEEecCCC-CCChhHHHHHHHHHHHhcCcEEEEEeCCCCC-Cchhhhhhcccchhccce----------eeeehhcHH
Q 011954 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGAEVVWITNQKPN-EPDEVIYSLEHKMLDRGV----------QVLSAKGEK 143 (474)
Q Consensus 76 kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 143 (474)
||+++++.+. .||+++.+.+++++|.+.||+|++++..... .... .......... .........
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGDKRDSKLLARFKKLRRLR 76 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeecccccccchhccccchHHHH
Confidence 5899999887 6888999999999999999999999965543 1111 1111111111 112223445
Q ss_pred HHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhh-----hhhcccccccccccccccHHHHH
Q 011954 144 AINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLE-----YVKHLPFVAGAMIDSYTTAEYWK 218 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~ 218 (474)
.+.+..+||+||++......++..... . ..+++.+.|.......... ....++.++.+++.+....
T Consensus 77 ~~l~~~~~d~i~~~~~~~~~~~~~~~~-~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~---- 147 (348)
T cd03820 77 KLLKNNKPDVVISFLTSLLTFLASLGL-K----IVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDR---- 147 (348)
T ss_pred HhhcccCCCEEEEcCchHHHHHHHHhh-c----cccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHH----
Confidence 566668999999998662222222111 1 1477888887643332221 2233556666666666554
Q ss_pred HhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHH
Q 011954 219 NRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQL 298 (474)
Q Consensus 219 ~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~ 298 (474)
.........++.++|||++.+.+... .+.++..++++|++.+.||++.+++++.++.+
T Consensus 148 ---~~~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~- 205 (348)
T cd03820 148 ---ALYYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK- 205 (348)
T ss_pred ---HHhhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh-
Confidence 11234566889999999998865432 12567889999999999999999999998865
Q ss_pred HHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHH
Q 011954 299 IREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEA 378 (474)
Q Consensus 299 ~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EA 378 (474)
..++++|+|+|+++ ....++++++++++.++|.+.|+.+++..+|+.||++++||. .|++|++++||
T Consensus 206 ------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~~~Ea 272 (348)
T cd03820 206 ------KHPDWKLRIVGDGP-----EREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMVLLEA 272 (348)
T ss_pred ------cCCCeEEEEEeCCC-----CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHHHHHH
Confidence 45899999999986 677888889999999999999999999999999999999999 89999999999
Q ss_pred HhcCCCEEEcCCC-CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011954 379 MAFQLPVLGTAAG-GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIA 455 (474)
Q Consensus 379 ma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 455 (474)
|+||+|||+++.+ +..+++.++.+|+++++.| +++++++|.++++|++.+++|++++++.+ ++|+|++++++|.
T Consensus 273 ~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 273 MAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHcCCCEEEecCCCchHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 9999999999976 4577777777999999988 99999999999999999999999997655 5699999999885
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.6e-37 Score=299.45 Aligned_cols=342 Identities=20% Similarity=0.221 Sum_probs=248.5
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhh--hc--c--cchhccceeeeehhcHHHHhh
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIY--SL--E--HKMLDRGVQVLSAKGEKAINT 147 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~~~ 147 (474)
||+++++.+++ ||++..+.+|+++|.+.||+|.+++............ .+ . .........+..........+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 58999987665 7778999999999999999999999654321110000 00 0 000001111112223444556
Q ss_pred hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch------------hhhhhcccccccccccccccHH
Q 011954 148 ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK------------LEYVKHLPFVAGAMIDSYTTAE 215 (474)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~~~ 215 (474)
..+||+||+++.....+....... ....|++.++|+....+.. ......++.++.+++.+....+
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 157 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAAR---RLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD 157 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHH---HcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH
Confidence 789999999875443332222222 1235788888865332211 0111222444555555555444
Q ss_pred HHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHH
Q 011954 216 YWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYES 295 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l 295 (474)
.+. .....++.+++||+|.+.+.+.... ...++.++ +.+.++++++|++...||++.+++++.++
T Consensus 158 ~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l 222 (364)
T cd03814 158 ELR-------ARGFRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPL 222 (364)
T ss_pred HHh-------ccCCCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHh
Confidence 221 2234679999999999988654321 22344455 45678899999999999999999999988
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCch
Q 011954 296 LQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGR 373 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~ 373 (474)
.+ + ++++|+|+|+++ ....++ +..++|.|+|+ .+++.++|+.||++++||. .|++|+
T Consensus 223 ~~-------~-~~~~l~i~G~~~-----~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~ 281 (364)
T cd03814 223 RR-------R-PPVRLVIVGDGP-----ARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETFGL 281 (364)
T ss_pred hh-------c-CCceEEEEeCCc-----hHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCc
Confidence 65 3 689999999985 444443 44578999995 5789999999999999998 899999
Q ss_pred HHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011954 374 ITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQR 453 (474)
Q Consensus 374 ~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 453 (474)
+++|||+||+|||+++.++..|++.++.+|+++++.| .++++++|.++++|++.+++|++++++.+ ++|+|+.++++
T Consensus 282 ~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 358 (364)
T cd03814 282 VVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFLDN 358 (364)
T ss_pred HHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHHHH
Confidence 9999999999999999999999999889999999998 99999999999999999999999999998 66999999999
Q ss_pred HHHHHH
Q 011954 454 IALVLR 459 (474)
Q Consensus 454 ~~~~~~ 459 (474)
++++|+
T Consensus 359 ~~~~~~ 364 (364)
T cd03814 359 LLEAYR 364 (364)
T ss_pred HHHhhC
Confidence 999873
No 45
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=7.6e-38 Score=311.74 Aligned_cols=276 Identities=21% Similarity=0.248 Sum_probs=223.3
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc--------------chhhhh--------hcccccccc
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY--------------FKLEYV--------KHLPFVAGA 206 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--------------~~~~~~--------~~~~~~~~~ 206 (474)
.++|+||+|+...+.++....+.. ...|++++.|+..... ....+. ..++.++.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 589999999754433333333322 3468999999753210 011111 122445555
Q ss_pred cccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchH
Q 011954 207 MIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQD 286 (474)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~ 286 (474)
++.+....+. ...+|.+.+|+.|||||+|.+.|.+.... ..+.+.++|+++||+.+.||++
T Consensus 249 i~~s~~~~~~-----~~~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg~~ 309 (475)
T cd03813 249 TTLYEGNRER-----QIEDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKDIK 309 (475)
T ss_pred EecCHHHHHH-----HHHcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccCHH
Confidence 5555544332 23568888899999999999988654321 1235678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCC
Q 011954 287 LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~ 366 (474)
.+++|++.+.+ +.++++|+|+|+++ .++++.++++++++++++.++|+|+| .+++.++|+.+|++|+||.
T Consensus 310 ~li~a~~~l~~-------~~p~~~l~IvG~g~-~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~- 379 (475)
T cd03813 310 TFIRAAAIVRK-------KIPDAEGWVIGPTD-EDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSI- 379 (475)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEECCCC-cChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCch-
Confidence 99999998876 45899999999985 33357889999999999999999999 7799999999999999999
Q ss_pred CCCCCchHHHHHHhcCCCEEEcCCCCcceeeee------CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 011954 367 RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN------GTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYER 440 (474)
Q Consensus 367 ~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~ 440 (474)
.||+|++++|||+||+|||+|++||++|++.+ |.+|++++++| +++++++|.++++|++.+++|+++++++
T Consensus 380 -~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~~~~a~~~ 456 (475)
T cd03813 380 -SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAMGEAGRKR 456 (475)
T ss_pred -hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988 56999999999 9999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 011954 441 VKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~ 459 (474)
+.+.|+|+.++++|.++|+
T Consensus 457 v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 457 VERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999984
No 46
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=6.9e-37 Score=296.21 Aligned_cols=351 Identities=26% Similarity=0.281 Sum_probs=265.8
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhc---cc-----eeeeehhcHHHH
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLD---RG-----VQVLSAKGEKAI 145 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~ 145 (474)
||+++++.+++ ||+..++..++++|.+.||+|.+++.................... .. ...........+
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 58999988655 677899999999999999999999966543322111100000000 00 000111223445
Q ss_pred hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-----------hhhhhcccccccccccccccH
Q 011954 146 NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-----------LEYVKHLPFVAGAMIDSYTTA 214 (474)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~ 214 (474)
....++|+||++............ .....++++++|+....... ......+...+.+++.+....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~----~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAA----RLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHH----HhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 556899999999866554433111 11345888999986543321 112223345566666655555
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYE 294 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~ 294 (474)
+.+ .+.++....++.++|||++...+.+.. ...+.......+.++++++|++...||++.+++++..
T Consensus 157 ~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (374)
T cd03801 157 EEL----RELGGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAK 223 (374)
T ss_pred HHH----HhcCCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHH
Confidence 444 444555457899999999998876432 1223334455677899999999999999999999998
Q ss_pred HHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCc
Q 011954 295 SLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFG 372 (474)
Q Consensus 295 l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~ 372 (474)
+.+ +.++++|+++|+++ ....+++.+++++..++|.+.|+. +++.++|+.||++++|+. .|++|
T Consensus 224 ~~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~ 289 (374)
T cd03801 224 LRK-------EYPDVRLVIVGDGP-----LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGFG 289 (374)
T ss_pred Hhh-------hcCCeEEEEEeCcH-----HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hcccc
Confidence 865 34789999999875 788888888899999999999987 899999999999999999 79999
Q ss_pred hHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011954 373 RITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQ 452 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 452 (474)
++++|||++|+|||+++.++..|++.++.+|+++++.| +++++++|.+++++++.++++++++++.+.+.|+|+.+++
T Consensus 290 ~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 290 LVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred chHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999899999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011954 453 RIALVLR 459 (474)
Q Consensus 453 ~~~~~~~ 459 (474)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9999874
No 47
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=2.2e-36 Score=293.69 Aligned_cols=347 Identities=21% Similarity=0.289 Sum_probs=256.9
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccc-------hhccceeeeehhcHHHHh
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHK-------MLDRGVQVLSAKGEKAIN 146 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 146 (474)
|||+++..++| ||++..+.+++++|.+.||+|++++................. ..................
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 58999988765 777899999999999999999999965443222111000000 000001111112233345
Q ss_pred hhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch---------------hhhhhccccccccccccc
Q 011954 147 TALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK---------------LEYVKHLPFVAGAMIDSY 211 (474)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~---------------~~~~~~~~~~~~~~~~s~ 211 (474)
...+||+||++++............ ....+++++.|.....+.. ......+..++.+++.+.
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVAR---KLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHH---HcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 6689999999987544332222221 2345788888865332110 011223345566666555
Q ss_pred ccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHH
Q 011954 212 TTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHS 291 (474)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a 291 (474)
...+.+. .++.. .++.++|||+|.+.+.+... ...++.++.++++++|+++|++.+.||++.++++
T Consensus 158 ~~~~~~~-----~~~~~-~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 223 (374)
T cd03817 158 KIADLLR-----EYGVK-RPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRA 223 (374)
T ss_pred HHHHHHH-----hcCCC-CceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHH
Confidence 5444433 33443 45999999999988766432 2235667777888999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGE 369 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E 369 (474)
+..+.+ +.++++|+++|+++ ..+.+++.++++++.++|.|+|+. +++..+|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e 289 (374)
T cd03817 224 FARLLK-------EEPDVKLVIVGDGP-----EREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST--TE 289 (374)
T ss_pred HHHHHH-------hCCCeEEEEEeCCc-----hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--cc
Confidence 998865 34789999999986 778899999999999999999976 789999999999999998 89
Q ss_pred CCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 370 CFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 370 ~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
++|++++|||+||+|||+++.|+..|++.++.+|+++++.+ . +++++|.+++++++.+++|++++++.+.+.+
T Consensus 290 ~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---- 362 (374)
T cd03817 290 TQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---- 362 (374)
T ss_pred CcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999887 5 9999999999999999999999999998744
Q ss_pred HHHHHHHHHHH
Q 011954 450 MSQRIALVLRE 460 (474)
Q Consensus 450 ~~~~~~~~~~~ 460 (474)
+++++.++|++
T Consensus 363 ~~~~~~~~~~~ 373 (374)
T cd03817 363 FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHhc
Confidence 66777777764
No 48
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=2.3e-36 Score=295.83 Aligned_cols=342 Identities=20% Similarity=0.183 Sum_probs=237.6
Q ss_pred EEEEEecCCCCC-ChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhh----hhcccchhccceeeeeh---------
Q 011954 76 LVLLVSHELSLS-GGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVI----YSLEHKMLDRGVQVLSA--------- 139 (474)
Q Consensus 76 kIl~v~~~~~~g-G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------- 139 (474)
.|.|++|+.+.| |+||++.+.+.+|.+. ||+|+|+|.+......... ..+.... ..++.++..
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~ 80 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIEL-DRPRIVFFLLKYRKLVEA 80 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeec-CCCceEEEEecceeeecc
Confidence 589999999997 7799999999999998 8999999977655331111 1111111 111111110
Q ss_pred ---h----------cHH---HHhhhcCCCEEEEcccchhhH-HhHHhhhcccccccceeeeeecccc--ccc--------
Q 011954 140 ---K----------GEK---AINTALNADLVVLNTAVAGKW-LDGVLKDKVSQVLPKVLWWIHEMRG--HYF-------- 192 (474)
Q Consensus 140 ---~----------~~~---~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~h~~~~--~~~-------- 192 (474)
. ... ......+||+++.++.++..+ +...+. ..|++.++|-... ...
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~------~~~~i~y~h~P~~~~d~l~~~~~~~~ 154 (419)
T cd03806 81 STYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLG------GCPVGAYVHYPTISTDMLQKVRSREA 154 (419)
T ss_pred ccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhc------CCeEEEEecCCcchHHHHHHHhhccc
Confidence 0 000 111135799999887554432 222211 2488999993200 000
Q ss_pred -----------------hh--------hhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchh
Q 011954 193 -----------------KL--------EYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIA 247 (474)
Q Consensus 193 -----------------~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~ 247 (474)
+. .+...+..++.++++|..+.+.+.+ .++. ..++.|||||+|.+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~----~~~~-~~~~~vi~~gvd~~~~~~~ 229 (419)
T cd03806 155 SYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRS----LWKR-NTKPSIVYPPCDVEELLKL 229 (419)
T ss_pred cccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHH----HhCc-CCCcEEEcCCCCHHHhccc
Confidence 00 1112234556667776666655443 3332 2589999999998876543
Q ss_pred hhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC-chHHH
Q 011954 248 EDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ-TKFET 326 (474)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~-~~~~~ 326 (474)
+. ....+..+|+++||+.+.||++.+++|++++.+...+. ..++++|+|+|++.... .++.+
T Consensus 230 ~~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~ 292 (419)
T cd03806 230 PL---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVE 292 (419)
T ss_pred cc---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHH
Confidence 21 01245678999999999999999999999887632110 01359999999875332 23678
Q ss_pred HHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc-ceeee---eC
Q 011954 327 ELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT-MEIVV---NG 400 (474)
Q Consensus 327 ~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~-~e~v~---~~ 400 (474)
+++++++++++.++|+|+|+. +++..+|+.||++|+||. .|+||++++||||||+|||+++.||. .|++. ++
T Consensus 293 ~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g 370 (419)
T cd03806 293 DLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGG 370 (419)
T ss_pred HHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCC
Confidence 899999999999999999974 789999999999999998 89999999999999999999999876 67887 78
Q ss_pred CceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011954 401 TTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQ 452 (474)
Q Consensus 401 ~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 452 (474)
.+|++++ | +++++++|.+++++++...++..++++.+.++||++.+.+
T Consensus 371 ~~G~l~~--d--~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 371 PTGFLAS--T--AEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred CceEEeC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 9999984 5 9999999999999655444434555556778899998764
No 49
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.9e-36 Score=292.37 Aligned_cols=331 Identities=17% Similarity=0.226 Sum_probs=230.5
Q ss_pred EEEEEecC-CCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh------------
Q 011954 76 LVLLVSHE-LSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------ 140 (474)
Q Consensus 76 kIl~v~~~-~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (474)
||++++.. +++ ||+++++.+++++|.++||+|+|++......... ....++.+....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE--------TEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc--------cccCCceEEEcCCCCccchhhhHH
Confidence 58899765 322 8889999999999999999999999654322110 011122221110
Q ss_pred cHHHHhhh--cCCCEEEEcc--cchhhHHhHHhhhcccccccceeeeeeccccccch-----hhhh-----hcccccccc
Q 011954 141 GEKAINTA--LNADLVVLNT--AVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-----LEYV-----KHLPFVAGA 206 (474)
Q Consensus 141 ~~~~~~~~--~~~DiV~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-----~~~~-----~~~~~~~~~ 206 (474)
....+... .++|++|+|. +....+... ... ...+++++.|+....... ..+. ..+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFLPL-LRL----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHHHH-HHh----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 01111111 2455555544 332222111 111 246888888875311100 0111 122344555
Q ss_pred cccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchH
Q 011954 207 MIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQD 286 (474)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~ 286 (474)
++.|....+. +...++.+. .+||||+|...+.+. ...++.++.+++. .++++||+.+.||++
T Consensus 148 i~~s~~~~~~----~~~~~~~~~---~~i~ngv~~~~~~~~----------~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~ 209 (363)
T cd04955 148 IADSPGIKEY----LKEKYGRDS---TYIPYGADHVVSSEE----------DEILKKYGLEPGR-YYLLVGRIVPENNID 209 (363)
T ss_pred EeCCHHHHHH----HHHhcCCCC---eeeCCCcChhhcchh----------hhhHHhcCCCCCc-EEEEEecccccCCHH
Confidence 5555555444 434566432 899999998876541 1234455655444 577999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH-HcCCCCeEEEecCC--CChHHHHhcCCEEEEc
Q 011954 287 LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA-EKKIQDHVHFVNKT--LTVSPYLASIDVLVQN 363 (474)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~--~~~~~~~~~adv~v~p 363 (474)
.+++|++++. .+++|+++|+++. ...+.+.+. .++..++|+|+|++ +++..+|..||++++|
T Consensus 210 ~li~a~~~l~----------~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 210 DLIEAFSKSN----------SGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred HHHHHHHhhc----------cCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 9999998762 3799999999852 233333433 67778899999975 6788999999999999
Q ss_pred CCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 364 SQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 364 s~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
|.. .|+||++++|||+||+|||+|+.|+..|++.+ +|+++++++ . ++++|.+++++++.+.++++++++.+.+
T Consensus 275 s~~-~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 347 (363)
T cd04955 275 GHS-VGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMAKAARERIRE 347 (363)
T ss_pred Ccc-CCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 982 39999999999999999999999999999954 899998866 3 9999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHH
Q 011954 444 RFLEHHMSQRIALVLR 459 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~~ 459 (474)
+|||+.++++++++|+
T Consensus 348 ~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 348 KYTWEKIADQYEELYK 363 (363)
T ss_pred hCCHHHHHHHHHHHhC
Confidence 9999999999999984
No 50
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=1.2e-36 Score=292.59 Aligned_cols=336 Identities=23% Similarity=0.272 Sum_probs=257.0
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhc------ccchhccceeeeehhcHHHHhhhc
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSL------EHKMLDRGVQVLSAKGEKAINTAL 149 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (474)
||+++++.+..||+++++..++++|.+.||+|.+++.............. ...................+.+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999998888999999999999999999999999965443221111100 000000011111223445566678
Q ss_pred CCCEEEEccc-chhhHHhHHhhhcccccccceeeeeeccccccchh------hhhhcccccccccccccccHHHHHHhHH
Q 011954 150 NADLVVLNTA-VAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL------EYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 150 ~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
+||+||++.. ....+ .. +.... ..++++++|+........ .....+...+.+++.+....+.+.+
T Consensus 81 ~~dii~~~~~~~~~~~-~~-~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--- 152 (353)
T cd03811 81 KPDVVISHLTTTPNVL-AL-LAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK--- 152 (353)
T ss_pred CCCEEEEcCccchhHH-HH-HHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH---
Confidence 9999999987 32222 22 22111 468899999875433321 1334456777777777776665544
Q ss_pred HHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHh
Q 011954 223 ERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREK 302 (474)
Q Consensus 223 ~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (474)
.++.+..++.+||||+|.+.+.+..... . .++.+.++++++++|++.+.||++.+++++..+.+
T Consensus 153 -~~~~~~~~~~vi~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~----- 216 (353)
T cd03811 153 -LLGIPPDKIEVIYNPIDIEEIRALAEEP--------L--ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK----- 216 (353)
T ss_pred -hhcCCccccEEecCCcChhhcCcccchh--------h--hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh-----
Confidence 4555568899999999998876543210 0 34456778999999999999999999999998865
Q ss_pred ccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcC
Q 011954 303 KLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382 (474)
Q Consensus 303 ~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G 382 (474)
+.++++|+++|.++ ....++++++++++.++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|
T Consensus 217 --~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G 287 (353)
T cd03811 217 --EGPDARLVILGDGP-----LREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALG 287 (353)
T ss_pred --cCCCceEEEEcCCc-----cHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhC
Confidence 34789999999986 677888999999999999999999999999999999999999 899999999999999
Q ss_pred CCEEEcCCCCcceeeeeCCceeeecCCCCChHHH---HHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 011954 383 LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPL---ANNIVKLATHVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 383 ~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~l---a~~i~~ll~~~~~~~~~~~~~~~~~~~~fs 446 (474)
+|||+++.||..|++.++.+|+++++++ .+++ ++++..+.++++.++++++++++.+.++|+
T Consensus 288 ~PvI~~~~~~~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 288 TPVVATDCPGPREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CCEEEcCCCChHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988 8888 788888888999999999988998888886
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=4.6e-36 Score=289.52 Aligned_cols=331 Identities=21% Similarity=0.256 Sum_probs=246.3
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee----------------h
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS----------------A 139 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 139 (474)
||+++++. .||.+.++..++++|.+.||+|++++........ ....++.+.. .
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE---------LEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc---------cccCCceEEeccccccccChHhHHHHH
Confidence 58999987 6777899999999999999999999966543210 0111111111 1
Q ss_pred hcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhh---------hhhcccccccccccc
Q 011954 140 KGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLE---------YVKHLPFVAGAMIDS 210 (474)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~---------~~~~~~~~~~~~~~s 210 (474)
.......+..+||+||+++.....+...... .. ..+++++..|+......... ....+...+.+++.+
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~-~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 146 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAAR-LA--GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQN 146 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHH-Hc--CCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcC
Confidence 1233455568999999997654433222221 11 23467777776532211111 122234445555655
Q ss_pred cccHHHHHHhHHHHhcCC-CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 211 YTTAEYWKNRTRERLGIR-MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
....+.+.. ....+ ..++.++++|+|.+.+.+.... .+.++++++++|++.+.||++.++
T Consensus 147 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~li 207 (359)
T cd03808 147 EDDRDLALK----LGIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDELL 207 (359)
T ss_pred HHHHHHHHH----hcCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHHH
Confidence 555544433 33222 4678888999998877654310 135678999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHH-HHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCC
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRN-FVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~-~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~ 368 (474)
+++..+.+ ++++++|+|+|.++.. ..... ++.+.+..++|+|+|+.+++.++|+.||++++||. .
T Consensus 208 ~~~~~l~~-------~~~~~~l~i~G~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~--~ 273 (359)
T cd03808 208 EAARILKA-------KGPNVRLLLVGDGDEE-----NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY--R 273 (359)
T ss_pred HHHHHHHh-------cCCCeEEEEEcCCCcc-----hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--c
Confidence 99998865 4589999999998632 22222 36677778899999999999999999999999999 7
Q ss_pred CCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 011954 369 ECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEH 448 (474)
Q Consensus 369 E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 448 (474)
|++|++++|||+||+|||+|+.++..|++.++.+|++++++| +++++++|.+++.+++.+.++++++++++.++|+|+
T Consensus 274 e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 274 EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999899999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011954 449 HMSQRIA 455 (474)
Q Consensus 449 ~~~~~~~ 455 (474)
.++++++
T Consensus 352 ~~~~~~~ 358 (359)
T cd03808 352 IVVKKLL 358 (359)
T ss_pred HHHHHhh
Confidence 9999876
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=6.6e-36 Score=292.93 Aligned_cols=346 Identities=12% Similarity=0.063 Sum_probs=235.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-------------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (474)
.++|++++. ...|++..+..++++|.++||+|+|++...+....+. ....++.++...
T Consensus 3 ~~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~ 73 (415)
T cd03816 3 RKRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEI-------LSNPNITIHPLPPPPQRLNKLPFLL 73 (415)
T ss_pred ccEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHH-------hcCCCEEEEECCCCccccccchHHH
Confidence 567888886 3356667778899999999999999996543321110 111222222111
Q ss_pred ------------cHHHHhhhcCCCEEEEcccch--hhHHhHHhhhcccccccceeeeeeccccccc------hh---hh-
Q 011954 141 ------------GEKAINTALNADLVVLNTAVA--GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF------KL---EY- 196 (474)
Q Consensus 141 ------------~~~~~~~~~~~DiV~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~------~~---~~- 196 (474)
..+.+....+||+||+|++.. ..+...+.+.. ...|++.++|+...... .. .+
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~---~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~ 150 (415)
T cd03816 74 FAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLL---RRTKLIIDWHNYGYTILALKLGENHPLVRLA 150 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH---hCCeEEEEcCCchHHHHhcccCCCCHHHHHH
Confidence 011123446899999987443 22222222221 23578888997531100 00 11
Q ss_pred ----hhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHH----------
Q 011954 197 ----VKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRE---------- 262 (474)
Q Consensus 197 ----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~---------- 262 (474)
...++.++.+++.|..+.+++ .+ ++.+.+++.|||||. .+.|.+...... ...+.+
T Consensus 151 ~~~e~~~~~~ad~ii~vS~~~~~~l----~~-~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~~~~ 220 (415)
T cd03816 151 KWYEKLFGRLADYNLCVTKAMKEDL----QQ-FNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLTREL 220 (415)
T ss_pred HHHHHHHhhcCCEeeecCHHHHHHH----Hh-hhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhcccccccccc
Confidence 112345566666666665554 33 577889999999994 455655432211 111111
Q ss_pred ---hcCC-CCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC
Q 011954 263 ---SLGV-RDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ 338 (474)
Q Consensus 263 ---~~~~-~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~ 338 (474)
..++ +++..+++++||+.+.||++.+++|+..+.+...+. .++|+++|+|+|+|+ ..++++++++++++.
T Consensus 221 ~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-~~~~~i~l~ivG~G~-----~~~~l~~~~~~~~l~ 294 (415)
T cd03816 221 RIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-PKLPKLLCIITGKGP-----LKEKYLERIKELKLK 294 (415)
T ss_pred ccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc-ccCCCEEEEEEecCc-----cHHHHHHHHHHcCCC
Confidence 1112 244577888999999999999999999886532110 023689999999996 789999999999997
Q ss_pred CeEEEecCC--CChHHHHhcCCEEEEcCCC-CCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHH
Q 011954 339 DHVHFVNKT--LTVSPYLASIDVLVQNSQA-RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTP 415 (474)
Q Consensus 339 ~~v~~~g~~--~~~~~~~~~adv~v~ps~~-~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~ 415 (474)
+.+.+.|+. +++.++|+.||++|.|+.. ..|++|++++||||||+|||+|+.||..|+++++.+|++++ | +++
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d--~~~ 370 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--D--SEE 370 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--C--HHH
Confidence 555555653 8999999999999975321 15789999999999999999999999999999999999994 5 999
Q ss_pred HHHHHHHHhhC---HHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011954 416 LANNIVKLATH---VERRLTMGKKGYERVKDRFLEHHMSQR 453 (474)
Q Consensus 416 la~~i~~ll~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~ 453 (474)
++++|..+++| ++.+++|++++++..+ ++|+....+
T Consensus 371 la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 371 LAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 99999999999 9999999999999874 555554443
No 53
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1e-36 Score=295.52 Aligned_cols=341 Identities=19% Similarity=0.145 Sum_probs=248.5
Q ss_pred EEEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccch-h-ccce-----eeeehhcHHHH
Q 011954 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKM-L-DRGV-----QVLSAKGEKAI 145 (474)
Q Consensus 76 kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~-~~~~-----~~~~~~~~~~~ 145 (474)
||++++.++.+ ||+++++.+|+++|.+.|++|++++.................. . .... ...........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 58888888765 8889999999999999999999999654432221111000000 0 0000 00011122233
Q ss_pred hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch------------hhhhhccccccccccccccc
Q 011954 146 NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK------------LEYVKHLPFVAGAMIDSYTT 213 (474)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~ 213 (474)
....++|+||+++...... .....+++.++|+....... ......+...+.+++.+...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~---------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL---------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred hhhcCCCeeeecccccCcc---------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 3347899999998655443 12346888999986422211 11222234555555555544
Q ss_pred HHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHH
Q 011954 214 AEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFY 293 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~ 293 (474)
.+.+.+.++.+..++.++|||+|.+.+...... . +.......++++++++|++.+.||++.+++++.
T Consensus 152 ----~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 152 ----KRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred ----HHHHHHHhCcCHHHEEeeccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHH
Confidence 444555566677889999999999887654321 1 333344567789999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCC
Q 011954 294 ESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECF 371 (474)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~ 371 (474)
.+.+ ..++++|+++|.++.. .....+..++++..++|+++|+. +++.++|+.||++++||. .|++
T Consensus 219 ~~~~-------~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~ 285 (365)
T cd03809 219 RLPA-------KGPDPKLVIVGKRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGF 285 (365)
T ss_pred HHHH-------hcCCCCEEEecCCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccC
Confidence 8866 3357999999987532 23333333678888999999986 889999999999999998 8999
Q ss_pred chHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011954 372 GRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMS 451 (474)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~ 451 (474)
|++++|||++|+|||+++.|+..|++ +.+|+++++.| +++++++|.++++|++.+.++++++++.+ ++|+|++++
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~~~~e~~--~~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~sw~~~~ 360 (365)
T cd03809 286 GLPVLEAMACGTPVIASNISSLPEVA--GDAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARA-KRFSWEKTA 360 (365)
T ss_pred CCCHHHHhcCCCcEEecCCCCcccee--cCceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhCCHHHHH
Confidence 99999999999999999999999998 45799999988 99999999999999999999999999766 559999999
Q ss_pred HHHHH
Q 011954 452 QRIAL 456 (474)
Q Consensus 452 ~~~~~ 456 (474)
+++.+
T Consensus 361 ~~~~~ 365 (365)
T cd03809 361 RRTLD 365 (365)
T ss_pred HHHhC
Confidence 98863
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=3.4e-36 Score=290.95 Aligned_cols=335 Identities=19% Similarity=0.154 Sum_probs=241.0
Q ss_pred EEEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhc-------cce--------ee-
Q 011954 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLD-------RGV--------QV- 136 (474)
Q Consensus 76 kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-------~~~--------~~- 136 (474)
|||++++.+++ ||+++++.+++++|.++||+|++++.................... ... ..
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 59999988766 678899999999999999999999965433221110000000000 000 00
Q ss_pred --eehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccH
Q 011954 137 --LSAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTA 214 (474)
Q Consensus 137 --~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (474)
........+.+..+||+||+++............ .....|++.++|+........... ....+.+++.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~---~~~~~~~i~~~hd~~~~~~~~~~~--~~~~d~ii~~s~~~~ 155 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAA---RDRGIPIVLTLHDYWLICPRQGLF--KKGGDAVIAPSRFLL 155 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHH---HhcCCCEEEEEeeeeeecchhhhh--ccCCCEEEEeCHHHH
Confidence 0012234555668999999998532211111111 112368888899753222111111 122255666665555
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYE 294 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~ 294 (474)
+.+.+ .+....++.+|+||+|...+.+... +.+.++++++++|++.+.||++.+++++.+
T Consensus 156 ~~~~~-----~~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~ 215 (359)
T cd03823 156 DRYVA-----NGLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKR 215 (359)
T ss_pred HHHHH-----cCCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCccccCHHHHHHHHHH
Confidence 54432 3334578999999999988754321 234677899999999999999999999998
Q ss_pred HHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCc
Q 011954 295 SLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFG 372 (474)
Q Consensus 295 l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~ 372 (474)
+.+ ++++|+++|.++ ......... +..++|+++|+. +++.++|+.||++++||.+ .|++|
T Consensus 216 l~~---------~~~~l~i~G~~~-----~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~-~e~~~ 277 (359)
T cd03823 216 LPR---------GDIELVIVGNGL-----ELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIW-PENFP 277 (359)
T ss_pred HHh---------cCcEEEEEcCch-----hhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcc-cCCCC
Confidence 854 689999999985 222222222 556899999986 8999999999999999974 79999
Q ss_pred hHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011954 373 RITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQ 452 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 452 (474)
++++|||+||+|||+|+.++..|++.++.+|++++++| +++++++|.++++|++.++.+++++++.... +.+++
T Consensus 278 ~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 351 (359)
T cd03823 278 LVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRSI----EDQAE 351 (359)
T ss_pred hHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH----HHHHH
Confidence 99999999999999999999999999988999999998 9999999999999999999999998876643 89999
Q ss_pred HHHHHHH
Q 011954 453 RIALVLR 459 (474)
Q Consensus 453 ~~~~~~~ 459 (474)
+++++|+
T Consensus 352 ~~~~~~~ 358 (359)
T cd03823 352 EYLKLYR 358 (359)
T ss_pred HHHHHhh
Confidence 9999886
No 55
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.5e-36 Score=293.08 Aligned_cols=342 Identities=16% Similarity=0.123 Sum_probs=232.2
Q ss_pred EEEEecCCC--C-CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhc----------------------
Q 011954 77 VLLVSHELS--L-SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLD---------------------- 131 (474)
Q Consensus 77 Il~v~~~~~--~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~---------------------- 131 (474)
||++++.++ + +|+...+.+++++|++. |+|+++|.............+......
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTG 79 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCC
Confidence 688888743 3 67778899999999775 999999965432211111111000000
Q ss_pred ccee--eeehh----cHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-----------h
Q 011954 132 RGVQ--VLSAK----GEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-----------L 194 (474)
Q Consensus 132 ~~~~--~~~~~----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-----------~ 194 (474)
.... .+... ....+....++|+||+++...+.++.. .. ...|.+.+.|+.....+. .
T Consensus 80 ~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~----~~--~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~ 153 (397)
T TIGR03087 80 EPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP----HV--RGVPRIVDFVDVDSDKWLQYARTKRWPLRW 153 (397)
T ss_pred CCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc----cc--cCCCeEeehhhHHHHHHHHHHhccCcchhH
Confidence 0000 00011 122344458999999997544333221 01 124777778874311110 0
Q ss_pred hh-----------hhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHh
Q 011954 195 EY-----------VKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRES 263 (474)
Q Consensus 195 ~~-----------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~ 263 (474)
.+ ...++.++.+++.|....+. +.+..+....++.+||||+|.+.|.+.... .
T Consensus 154 ~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~----l~~~~~~~~~~v~vipngvd~~~f~~~~~~----------~-- 217 (397)
T TIGR03087 154 IYRREGRLLLAYERAIAARFDAATFVSRAEAEL----FRRLAPEAAGRITAFPNGVDADFFSPDRDY----------P-- 217 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHH----HHHhCCCCCCCeEEeecccchhhcCCCccc----------c--
Confidence 00 11223455555555544444 333344456789999999999988654321 0
Q ss_pred cCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEE
Q 011954 264 LGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHF 343 (474)
Q Consensus 264 ~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~ 343 (474)
...+.+..+++|+|++.+.||++.++.++.++...+.+ +.|+++|+|+|+|+ . .+++ +++..++|+|
T Consensus 218 ~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~~----~l~~~~~V~~ 284 (397)
T TIGR03087 218 NPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAVR----ALAALPGVTV 284 (397)
T ss_pred CCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHHH----HhccCCCeEE
Confidence 01234567899999999999999998655444333332 34899999999986 2 2333 3344568999
Q ss_pred ecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 344 VNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 344 ~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
+|+++++..+|+.||++|+||.+ .||+|++++|||+||+|||+|+.++. .+...+++|++++ +| +++++++|.++
T Consensus 285 ~G~v~~~~~~~~~adv~v~Ps~~-~eG~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~--~~~la~ai~~l 359 (397)
T TIGR03087 285 TGSVADVRPYLAHAAVAVAPLRI-ARGIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-AD--PADFAAAILAL 359 (397)
T ss_pred eeecCCHHHHHHhCCEEEecccc-cCCcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CC--HHHHHHHHHHH
Confidence 99999999999999999999974 79999999999999999999997542 2333456799987 67 99999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 424 ATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
++|++.+++|++++++++.++|||+.+++++.++|+
T Consensus 360 l~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 360 LANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999885
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=1.1e-35 Score=288.53 Aligned_cols=350 Identities=25% Similarity=0.325 Sum_probs=264.8
Q ss_pred EEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhc--------ccchh---ccc---eeeeeh
Q 011954 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSL--------EHKML---DRG---VQVLSA 139 (474)
Q Consensus 77 Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--------~~~~~---~~~---~~~~~~ 139 (474)
||++++.+++ ||+++++..++++|.+.||+|++++.............. ..... ... ......
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 6788888775 788899999999999999999999965443322111000 00000 000 000111
Q ss_pred hcHHHHhh--hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh------hhhhccccccccccccc
Q 011954 140 KGEKAINT--ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL------EYVKHLPFVAGAMIDSY 211 (474)
Q Consensus 140 ~~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~ 211 (474)
.....+.. ..++|+||++......++....... ...+++.+.|+........ .....+..++.+++.+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRK---LGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHh---cCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 23344555 7899999999765554444333322 2357888899765433222 22334456666666666
Q ss_pred ccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHH
Q 011954 212 TTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHS 291 (474)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a 291 (474)
...+.+.+ .+ .+..++.+++||+|.+.+.+..... . ...+...+.++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~~----~~-~~~~~~~~i~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 158 ALADELKA----LG-IDPEKVTVIPNGVDTERFSPADRAE-------A--RKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred HHHHHHHH----hc-CCCCceEEcCCCcCcccCCCcchHH-------H--HhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 65555443 22 5678999999999998887654221 1 334455677999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGE 369 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E 369 (474)
+..+.+ ++++++|+|+|.++ ....+++.++++++.++|.+.|+. +++.++|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~g~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~ 289 (377)
T cd03798 224 LARLLK-------KRPDVHLVIVGDGP-----LREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--RE 289 (377)
T ss_pred HHHHHh-------cCCCeEEEEEcCCc-----chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hc
Confidence 998865 44789999999986 567788888889998999999986 679999999999999999 89
Q ss_pred CCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 370 CFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 370 ~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
++|++++|||++|+|||+++.++..|++.++.+|++++++| +++++++|.+++++++. ++++++++.+.+.|+|+.
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~ 365 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVAERFSWEN 365 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999998 99999999999998886 788899999999999999
Q ss_pred HHHHHHHHHHHH
Q 011954 450 MSQRIALVLREV 461 (474)
Q Consensus 450 ~~~~~~~~~~~~ 461 (474)
+++++.++|+++
T Consensus 366 ~~~~~~~~~~~l 377 (377)
T cd03798 366 VAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=5.2e-35 Score=285.66 Aligned_cols=345 Identities=21% Similarity=0.227 Sum_probs=250.9
Q ss_pred EEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh--------------
Q 011954 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA-------------- 139 (474)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 139 (474)
|||++++.+++ ||++.++..++++|.+.||+|++++............. .......++.+...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 69999998766 78889999999999999999999996543322211000 00000111111110
Q ss_pred --------hcHHHHh-hhcCCCEEEEcccchh-hHHhHHhhhcccccccceeeeeeccccccch----------------
Q 011954 140 --------KGEKAIN-TALNADLVVLNTAVAG-KWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK---------------- 193 (474)
Q Consensus 140 --------~~~~~~~-~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~---------------- 193 (474)
....... ...+||+||++++... .......... ...++++++|+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARL---KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHh---cCCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 0011111 3678999999973222 2222222211 245888999975432111
Q ss_pred hhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEE
Q 011954 194 LEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLF 273 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (474)
......+...+.+++.+....+.+. ..+.+..++.++|||++...+.+.... .. +.....+.+++++
T Consensus 157 ~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i 223 (394)
T cd03794 157 KLERLIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVV 223 (394)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEE
Confidence 0111223455556655555544433 456778899999999998877654321 11 3344555778999
Q ss_pred EEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChH
Q 011954 274 AIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVS 351 (474)
Q Consensus 274 ~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~ 351 (474)
+++|++.+.||++.+++++.++.+ . ++++|+|+|+|+ ....+++.+...++ ++|.++|+. +++.
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~~-----~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~ 289 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDGP-----EKEELKELAKALGL-DNVTFLGRVPKEELP 289 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCcc-----cHHHHHHHHHHcCC-CcEEEeCCCChHHHH
Confidence 999999999999999999998865 2 689999999986 56677777666666 579999975 7899
Q ss_pred HHHhcCCEEEEcCCCCCCCC-----chHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 352 PYLASIDVLVQNSQARGECF-----GRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~-----~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
++|+.||++++||. .|++ |++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.++++|
T Consensus 290 ~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~ 365 (394)
T cd03794 290 ELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGD--PEALAAAILELLDD 365 (394)
T ss_pred HHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCC--HHHHHHHHHHHHhC
Confidence 99999999999998 5654 888999999999999999999999998888999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011954 427 VERRLTMGKKGYERVKDRFLEHHMSQRIA 455 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 455 (474)
++.+++|++++++++.++|||+.++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 366 PEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 99999999999999998999999998863
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=2.2e-34 Score=281.44 Aligned_cols=340 Identities=19% Similarity=0.172 Sum_probs=243.3
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhh----h-----cc---------------------
Q 011954 77 VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIY----S-----LE--------------------- 126 (474)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~----~-----~~--------------------- 126 (474)
+++++..++.+-+|.++..-++.|.+.+.+|+++............. . ..
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 56777778777778999999999999999999987443221111000 0 00
Q ss_pred -cchhccceee---eeh----hcHH------HH--------hhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeee
Q 011954 127 -HKMLDRGVQV---LSA----KGEK------AI--------NTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWI 184 (474)
Q Consensus 127 -~~~~~~~~~~---~~~----~~~~------~~--------~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 184 (474)
......+... ... .... .+ ....++|++|++...........+.... ..++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~--~~~~~i~~~ 159 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEY--LRKRVISRA 159 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhc--CCceEEEEe
Confidence 0000001000 000 0000 00 0124567777765333333223233222 223588999
Q ss_pred ecccccc--ch----hhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHH
Q 011954 185 HEMRGHY--FK----LEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLRE 258 (474)
Q Consensus 185 h~~~~~~--~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (474)
|+..... .. ......+..++.+++.|....++ +.+.++....++.+++||++.+.+.+..
T Consensus 160 Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~----l~~~~~~~~~ki~vi~~gv~~~~~~~~~---------- 225 (407)
T cd04946 160 HGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNY----LQKRYPAYKEKIKVSYLGVSDPGIISKP---------- 225 (407)
T ss_pred ccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHH----HHHHCCCccccEEEEECCcccccccCCC----------
Confidence 9653211 11 11122235666666666665554 4456777788999999999987654321
Q ss_pred HHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC--cEEEEEEcCCCCcCchHHHHHHHHHHHcC
Q 011954 259 HVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP--SMHAVVVGSDMNAQTKFETELRNFVAEKK 336 (474)
Q Consensus 259 ~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--~~~l~i~G~g~~~~~~~~~~l~~~~~~~~ 336 (474)
..++.+.++++|++.+.||++.+++|+.++.+ ++| +++++++|+|+ ..+.+++++++++
T Consensus 226 -------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~-------~~p~~~l~~~iiG~g~-----~~~~l~~~~~~~~ 286 (407)
T cd04946 226 -------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAK-------ARPSIKIKWTHIGGGP-----LEDTLKELAESKP 286 (407)
T ss_pred -------CCCCCEEEEEeeccccccCHHHHHHHHHHHHH-------hCCCceEEEEEEeCch-----HHHHHHHHHHhcC
Confidence 12567899999999999999999999999876 233 57788999986 7788999998888
Q ss_pred CCCeEEEecCC--CChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCC-CC
Q 011954 337 IQDHVHFVNKT--LTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTG-KE 411 (474)
Q Consensus 337 l~~~v~~~g~~--~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~-d~ 411 (474)
..++|+|+|++ +++.++|+. +|++++||. .||+|++++|||+||+|||+|++||.+|++.++.+|++++++ |
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~- 363 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPT- 363 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCC-
Confidence 88899999987 578899975 789999998 899999999999999999999999999999999999999875 5
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIA 455 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 455 (474)
+++++++|.++++|++.+++|+++|++++.++|+|+...+++.
T Consensus 364 -~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 -PNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 8999999999999999999999999999999999999998875
No 59
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.3e-34 Score=278.20 Aligned_cols=334 Identities=14% Similarity=0.119 Sum_probs=229.9
Q ss_pred cCEEEEEecCCCC--CChhHHHHHHHHHHHhc-CcEEEEEeCCCCCCchhhhhh--------------cccch-------
Q 011954 74 SKLVLLVSHELSL--SGGPLLLMELAFLLRGV-GAEVVWITNQKPNEPDEVIYS--------------LEHKM------- 129 (474)
Q Consensus 74 ~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~--------------~~~~~------- 129 (474)
+.+|.+++...-| .|...--.--|-+|++. |++|+++.+.-....+...+. +...+
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 3689999987544 67654444445667776 799999986644332221111 11111
Q ss_pred hccceeee------------ehhcHHHHhhhcCCCEEEEcccchhhHH--hHHhhhcccccccceeeeeeccccccchhh
Q 011954 130 LDRGVQVL------------SAKGEKAINTALNADLVVLNTAVAGKWL--DGVLKDKVSQVLPKVLWWIHEMRGHYFKLE 195 (474)
Q Consensus 130 ~~~~~~~~------------~~~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~ 195 (474)
....+.++ +...+...+...+|||||++++....|. ........ . +++..+|.....|....
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl---~-PVVasyHTny~eYl~~y 477 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF---N-HVVGVVHTNYLEYIKRE 477 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc---C-CeEEEEeCCcHHHHhHh
Confidence 01112222 2224556667799999999998776665 22222222 2 68888887654443311
Q ss_pred h----h--------hcccc--cccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHH
Q 011954 196 Y----V--------KHLPF--VAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVR 261 (474)
Q Consensus 196 ~----~--------~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (474)
. . .++.. ++.+++.|..+.+ + +...+.. .||||.++|.+.... ..+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~---------L--~~~vI~n-VnGVDte~F~P~~r~--------~~~ 537 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD---------L--PKSVICN-VHGVNPKFLKIGEKV--------AEE 537 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH---------h--cccceee-cccccccccCCcchh--------HHH
Confidence 1 1 11111 3444554433321 1 1122222 269999999876432 122
Q ss_pred HhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE
Q 011954 262 ESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV 341 (474)
Q Consensus 262 ~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (474)
.+++++.....++|+||+.+.||++.|++|++.+.+ +.++++|+|+|+|+ ..+++++++.++++ +|
T Consensus 538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~-------~~pnvrLvIVGDGP-----~reeLe~la~eLgL--~V 603 (794)
T PLN02501 538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN-------ELDGFNLDVFGNGE-----DAHEVQRAAKRLDL--NL 603 (794)
T ss_pred HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh-------hCCCeEEEEEcCCc-----cHHHHHHHHHHcCC--EE
Confidence 456665544567899999999999999999998765 34789999999997 78899999999887 59
Q ss_pred EEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHH
Q 011954 342 HFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIV 421 (474)
Q Consensus 342 ~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (474)
.|+|..++..++|+.+|+||+||. .|+||++++||||||+|||+++.+|.. ++.++.+|++. +| +++++++|.
T Consensus 604 ~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e-~V~~g~nGll~--~D--~EafAeAI~ 676 (794)
T PLN02501 604 NFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNE-FFRSFPNCLTY--KT--SEDFVAKVK 676 (794)
T ss_pred EecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCc-eEeecCCeEec--CC--HHHHHHHHH
Confidence 999999889999999999999999 899999999999999999999999854 46677788865 55 899999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 422 KLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 422 ~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
+++++++.+..+.+ ...|||+.+++++++.-
T Consensus 677 ~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 677 EALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 99998765443322 23699999999998764
No 60
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.8e-34 Score=285.39 Aligned_cols=273 Identities=17% Similarity=0.251 Sum_probs=209.4
Q ss_pred hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc---------hhhh---hhcccccccccccccccHH
Q 011954 148 ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF---------KLEY---VKHLPFVAGAMIDSYTTAE 215 (474)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~---------~~~~---~~~~~~~~~~~~~s~~~~~ 215 (474)
..++||+|++.+....+.. +.. . ...+.+.++|..+.... ...+ ......++.+++.+....+
T Consensus 209 ~~~~di~i~dr~~~~~~~~--~~~-~--~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQAV--LEN-K--GPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchHH--Hhc-C--CCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 4689999997654333221 111 1 12577778886431111 0111 1233455667777766666
Q ss_pred HHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHH
Q 011954 216 YWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYES 295 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l 295 (474)
.+.+.+.. ++....++.+||||++...+.+.. ..++.+|+++||+.+.||++.+++|+.++
T Consensus 284 ~l~~~~~~-~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFKK-YYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhhh-hcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 55544322 334467899999998765443210 13457899999999999999999999998
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 296 LQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
.+ +.|+++|+|+|+|+ ..+.++++++++++.++|+|+|+. ++.++|+.||++|+||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G~-----~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEGG-----EKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECch-----hHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 76 45899999999996 678899999999999999999976 89999999999999998 89999999
Q ss_pred HHHHhcCCCEEEcCCC-CcceeeeeCCceeeecCCC--CC----hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 011954 376 IEAMAFQLPVLGTAAG-GTMEIVVNGTTGLLHPTGK--EG----VTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEH 448 (474)
Q Consensus 376 ~EAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d--~~----~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 448 (474)
+||||||+|||+++++ |.+|+|.++.+|+++++++ .| +++||++|.++++ ++.+++|+++|++.++ .|||+
T Consensus 410 lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~-~fs~~ 487 (500)
T TIGR02918 410 MEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAE-GFLTA 487 (500)
T ss_pred HHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH-hcCHH
Confidence 9999999999999986 8999999999999998532 12 6789999999994 5679999999999764 59999
Q ss_pred HHHHHHHHHHHHH
Q 011954 449 HMSQRIALVLREV 461 (474)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (474)
.++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
No 61
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.3e-33 Score=263.39 Aligned_cols=383 Identities=29% Similarity=0.322 Sum_probs=280.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHh---------cCcEEEEEeCCCCCCchhh------------------hhh--
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG---------VGAEVVWITNQKPNEPDEV------------------IYS-- 124 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~---------~G~~V~v~~~~~~~~~~~~------------------~~~-- 124 (474)
.+++++.++....||.++.....+-.+.. .|++|.+++.+......+. .+.
T Consensus 34 ~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~lP 113 (495)
T KOG0853|consen 34 FEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWLP 113 (495)
T ss_pred chhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeecC
Confidence 45699999999999999888888888888 9999999997654431111 011
Q ss_pred ------cccchhccceeeeehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhh---
Q 011954 125 ------LEHKMLDRGVQVLSAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLE--- 195 (474)
Q Consensus 125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~--- 195 (474)
+.......+..++............+.|.|++.+..++.++...+.. |...+++++++|.....+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~ 191 (495)
T KOG0853|consen 114 RAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVL 191 (495)
T ss_pred cccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcC--CcccceeEEeccchHHHhccccCcc
Confidence 11122223334443333222222377899999888777777777765 7788999999999876665542
Q ss_pred ---hhhc--------ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhc
Q 011954 196 ---YVKH--------LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESL 264 (474)
Q Consensus 196 ---~~~~--------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (474)
+... ....+..++++..++..++..+. .++..++.+.+.++|.+.+.+..... ..+.+...|...
T Consensus 192 ~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~---~L~~~d~~~~y~ei~~s~~~~~~~~~-~~~~~~~~r~~~ 267 (495)
T KOG0853|consen 192 KVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFV---SLSNSDITSTYPEIDGSWFTYGQYES-HLELRLPVRLYR 267 (495)
T ss_pred ceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhh---hcCCCCcceeeccccchhcccccccc-chhcccccceee
Confidence 1111 12344556677777666665533 23445589999999988877532111 111234455666
Q ss_pred CCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCC-----CCcCchHHHHHHHHHHHcCC-C
Q 011954 265 GVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSD-----MNAQTKFETELRNFVAEKKI-Q 338 (474)
Q Consensus 265 ~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g-----~~~~~~~~~~l~~~~~~~~l-~ 338 (474)
++...+..+..+.++.+.||++++++++..+...+.+. ..++.+++++|+. ..+..++.+++.++++++++ .
T Consensus 268 ~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g 345 (495)
T KOG0853|consen 268 GVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLG 345 (495)
T ss_pred eecccceEeeeeeecCCCCCceeehhhHHhhhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccC
Confidence 77776888999999999999999999999987765431 3367899999943 23334578899999999998 4
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHH
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLAN 418 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (474)
+.+.|+....+...+...+|+.+.-+....|.||++++|||+||+|||+|+.||..|+|.++.+|++++++.+.+..+++
T Consensus 346 ~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~ 425 (495)
T KOG0853|consen 346 QFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELAD 425 (495)
T ss_pred ceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHH
Confidence 77788787766666766666644433333799999999999999999999999999999999999999996422236999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 419 NIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
++.++..|++.+.+|+++++++++++|+|..+.+++.++..+.+..
T Consensus 426 ~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~~ 471 (495)
T KOG0853|consen 426 ALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQW 471 (495)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCCc
Confidence 9999999999999999999999999999999999999998876543
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=1e-32 Score=259.59 Aligned_cols=295 Identities=14% Similarity=0.135 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEEEEcccchhhHHhHHhh
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLVVLNTAVAGKWLDGVLK 170 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~ 170 (474)
++-.-+-+.|...|++|+++-...-. +..+.. +++..+.|+.+...+...
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~~~~~~~--- 63 (331)
T PHA01630 14 RQKKLLEEHLKMLGHKVTVFEKPTLT--------------------------KYQLPP-GYPIYIYYTIFNSMLFWK--- 63 (331)
T ss_pred HHHHHHHHHHHHhCCeeEEEeccchh--------------------------hhhcCC-CCceeeehhhhhHHHHHh---
Confidence 56667778999999999998532110 111111 444444555433332222
Q ss_pred hcccccccceeeeeeccccccchhhhhhc--ccccccccccccccHHHHHHhHHHHhcCC-CCCeEEEeCCCCccccchh
Q 011954 171 DKVSQVLPKVLWWIHEMRGHYFKLEYVKH--LPFVAGAMIDSYTTAEYWKNRTRERLGIR-MPETYVVHLGNSKDLMDIA 247 (474)
Q Consensus 171 ~~~~~~~~~~v~~~h~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~ki~vi~ngvd~~~~~~~ 247 (474)
.++....++++++|+.. .....+... ...++.+++.|..+.+.+.+ .+++ .+++.|||||+|.+.|.+.
T Consensus 64 -~~~~~~~~~v~e~~~~~--~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~~ 135 (331)
T PHA01630 64 -GIPHVGKNIVFEVADTD--AISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEYK 135 (331)
T ss_pred -hccccCCceEEEEEeec--hhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCCC
Confidence 33445568888888732 222233333 35678888888777666543 3444 4689999999999888654
Q ss_pred hhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHH
Q 011954 248 EDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETE 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~ 327 (474)
... ..+.++++++|++.++||++.+++|++++.+ +.++++|+|+|+++ ....
T Consensus 136 ~~~----------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~-----~~~~ 187 (331)
T PHA01630 136 PKE----------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNM-----LDPR 187 (331)
T ss_pred ccc----------------cCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCcc-----cchh
Confidence 211 1345777788899999999999999998865 44799999999764 2221
Q ss_pred HHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeec
Q 011954 328 LRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHP 407 (474)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~ 407 (474)
+ .++.. +....+.+++..+|+.||++|+||. .|+||++++||||||+|||+|+.||.+|++.++.+|++++
T Consensus 188 l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~ 258 (331)
T PHA01630 188 L------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIK 258 (331)
T ss_pred h------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEee
Confidence 1 12222 2112234799999999999999999 8999999999999999999999999999999998887775
Q ss_pred CC-----------------CCChHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 408 TG-----------------KEGVTPLANNIVKLATHV--ERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 408 ~~-----------------d~~~~~la~~i~~ll~~~--~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
.+ +.|.+++++++.+++.|+ +.++++..++.+.+.++|||++++++++++|++
T Consensus 259 ~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 259 SGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 32 112788999999988863 445555555566667889999999999999975
No 63
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=4.2e-33 Score=268.83 Aligned_cols=312 Identities=21% Similarity=0.225 Sum_probs=209.7
Q ss_pred EEEEEecCCC-CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh---------hhhcccchhccceeeee-hhcHHH
Q 011954 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV---------IYSLEHKMLDRGVQVLS-AKGEKA 144 (474)
Q Consensus 76 kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 144 (474)
||+++++++. .||+|+++.+|++.|.+. +|..+........... ...++....... .+.. ......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYR-KYLPLMPLAIE 77 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHh-hhCchhhHHHH
Confidence 5899998866 599999999999999753 3333222211111000 000000000000 0000 011222
Q ss_pred HhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-------------hh------------hhhhc
Q 011954 145 INTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-------------KL------------EYVKH 199 (474)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-------------~~------------~~~~~ 199 (474)
.....++|+||+++......+. .....+.++++|......+ .. ...+.
T Consensus 78 ~~~~~~~D~v~~~~~~~~~~~~-------~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
T cd03804 78 QFDLSGYDLVISSSHAVAKGVI-------TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRS 150 (351)
T ss_pred hccccCCCEEEEcCcHHhcccc-------CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3345789999998754333211 1122466677775211000 00 01122
Q ss_pred ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccc
Q 011954 200 LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSV 279 (474)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl 279 (474)
+..++.+++.|..+.+.+.+ .++ .+..+|+||+|.+.+.+.. .....++++|++
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~----~~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~~ 204 (351)
T cd03804 151 AARVDYFIANSRFVARRIKK----YYG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGRL 204 (351)
T ss_pred hcCCCEEEECCHHHHHHHHH----HhC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEcC
Confidence 35666667777666665543 333 3468999999988775432 233458899999
Q ss_pred ccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcC
Q 011954 280 SRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASI 357 (474)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~a 357 (474)
.+.||++.+++|+.++ + ++|+|+|+|+ ..+.+++ +..++|+|+|++ +++.++|+.|
T Consensus 205 ~~~K~~~~li~a~~~~-----------~-~~l~ivG~g~-----~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 205 VPYKRIDLAIEAFNKL-----------G-KRLVVIGDGP-----ELDRLRA-----KAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred ccccChHHHHHHHHHC-----------C-CcEEEEECCh-----hHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhC
Confidence 9999999999999765 5 8999999986 4555554 445899999987 4599999999
Q ss_pred CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 358 DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 358 dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
|++++||. |+||++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|..+++|++ .+++++
T Consensus 263 d~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~---~~~~~~ 334 (351)
T cd03804 263 RAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED---FDPQAI 334 (351)
T ss_pred CEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---cCHHHH
Confidence 99999994 999999999999999999999999999999999999999988 9999999999999874 233444
Q ss_pred HHHHHHhcCHHHHHHHH
Q 011954 438 YERVKDRFLEHHMSQRI 454 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~ 454 (474)
++.+. +|+|+++.+++
T Consensus 335 ~~~~~-~~~~~~~~~~~ 350 (351)
T cd03804 335 RAHAE-RFSESRFREKI 350 (351)
T ss_pred HHHHH-hcCHHHHHHHh
Confidence 44444 49999988765
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=7.3e-32 Score=262.37 Aligned_cols=263 Identities=20% Similarity=0.285 Sum_probs=206.5
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch--------h---hhhhcccccccccccccccHHHH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK--------L---EYVKHLPFVAGAMIDSYTTAEYW 217 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--------~---~~~~~~~~~~~~~~~s~~~~~~~ 217 (474)
.++|+++++.+....+....... ..+.+.++|+....... . .....+..++.+++.+....+.
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~~-----~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~- 171 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMKK-----AAKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQD- 171 (372)
T ss_pred CCCCEEEECCccccchhHHhccC-----CceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHH-
Confidence 78999999987655541111111 12456777764321111 0 1112234555555555555444
Q ss_pred HHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHH
Q 011954 218 KNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQ 297 (474)
Q Consensus 218 ~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~ 297 (474)
+...++.. .++.+||||++.+.+.+... .+.++..++++||+.+.||++.+++++.++.+
T Consensus 172 ---l~~~~~~~-~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 172 ---LQKQFGNY-NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred ---HHHHhCCC-CceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 34445433 44999999999887654310 11455678999999999999999999999876
Q ss_pred HHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHH
Q 011954 298 LIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIE 377 (474)
Q Consensus 298 ~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~E 377 (474)
+.|+++|+|+|.|+ ....++++++++++.++|.|.|+.+++..+|+.||++|+||. .||||++++|
T Consensus 232 -------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYGD-----EEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeCc-----hHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 45899999999986 567788888999999999999999999999999999999999 8999999999
Q ss_pred HHhcCCCEEEcCCC-CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011954 378 AMAFQLPVLGTAAG-GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRI 454 (474)
Q Consensus 378 Ama~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 454 (474)
||++|+|||+++.+ |..|++.++.+|++++++| +++++++|..+++|++.+++|++++++.+ ++|||+.++++|
T Consensus 298 Ama~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 298 ALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred HHhCCCCEEEecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 99999999999988 8899999999999999998 99999999999999999999999999984 669999998865
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=3.4e-31 Score=245.84 Aligned_cols=241 Identities=19% Similarity=0.182 Sum_probs=177.0
Q ss_pred cceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhH
Q 011954 178 PKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLR 257 (474)
Q Consensus 178 ~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~ 257 (474)
.+++.++|+... ...+.+.+.+-+.++++|..+.+.+. ..|++.+ .+|+||+|.+.|.+.... .
T Consensus 71 ~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~-----~~G~~~~--i~I~~GVD~~~f~p~~~~------~ 134 (335)
T PHA01633 71 KYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQ-----EVGLQVD--LPVFHGINFKIVENAEKL------V 134 (335)
T ss_pred CceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHH-----HhCCCCc--eeeeCCCChhhcCccchh------h
Confidence 467888887643 13444455555566777777666544 2466544 358899999988764321 2
Q ss_pred HHHHHhcCCC-CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC
Q 011954 258 EHVRESLGVR-DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKK 336 (474)
Q Consensus 258 ~~~r~~~~~~-~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~ 336 (474)
.+++++++.. ++.++++++||+.++||++.+++|++++.+...+. ..+++++++|.+ ..++++
T Consensus 135 ~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~---~~~i~l~ivG~~-------------~~~~l~ 198 (335)
T PHA01633 135 PQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI---AKKIHFFVISHK-------------QFTQLE 198 (335)
T ss_pred HHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc---cccEEEEEEcHH-------------HHHHcC
Confidence 3456666643 46688999999999999999999999987622100 014688888742 124567
Q ss_pred CCCeEEEec---C--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee------------
Q 011954 337 IQDHVHFVN---K--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN------------ 399 (474)
Q Consensus 337 l~~~v~~~g---~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~------------ 399 (474)
+.++|+|+| + .+++.++|+.||++|+||. .||||++++|||+||+|||+++.||++|++.+
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 788999995 3 3679999999999999999 89999999999999999999999999997542
Q ss_pred ------CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011954 400 ------GTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIAL 456 (474)
Q Consensus 400 ------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 456 (474)
+..|+.++..| +++|+++|.++++..+ ...++.++++.+++ |+|++++++|++
T Consensus 277 ~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~-f~~~~~~~~~~~ 335 (335)
T PHA01633 277 EYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKLKELAKK-YDIRNLYTRFLE 335 (335)
T ss_pred HhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHHHHHHHh-cCHHHHHHHhhC
Confidence 12466777777 9999999999966322 33336677776655 999999999864
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=99.98 E-value=9.4e-31 Score=253.02 Aligned_cols=307 Identities=13% Similarity=0.068 Sum_probs=203.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCc-EEEEEeCCCCCCchhhhhhcccchhccceeeeehh------------c-
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGA-EVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------G- 141 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~- 141 (474)
++.++. .+..|++..+..++..|.++|+ +|++++........+. ....++.+...+ .
T Consensus 6 ~~~~~~--~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~-------~~~~~v~v~r~~~~~~~~~~~~~~~~ 76 (371)
T PLN02275 6 RAAVVV--LGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL-------LNHPSIHIHLMVQPRLLQRLPRVLYA 76 (371)
T ss_pred EEEEEE--ecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH-------hcCCcEEEEECCCcccccccccchHH
Confidence 444444 2456777889999999988775 8999996443221111 111112221110 0
Q ss_pred ---H-----------HH-HhhhcCCCEEEEcccchhh--HHhHHhhhcccccccceeeeeeccccccc------hh---h
Q 011954 142 ---E-----------KA-INTALNADLVVLNTAVAGK--WLDGVLKDKVSQVLPKVLWWIHEMRGHYF------KL---E 195 (474)
Q Consensus 142 ---~-----------~~-~~~~~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~h~~~~~~~------~~---~ 195 (474)
. +. ..+..+||+||+|++.... +........ ...|++.++|+...... .. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~ 153 (371)
T PLN02275 77 LALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWL---RRAKFVIDWHNFGYTLLALSLGRSHPLVR 153 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHH---hCCCEEEEcCCccHHHHhcccCCCCHHHH
Confidence 0 00 1345799999998754321 122222211 13578888897531110 00 0
Q ss_pred -----hhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC
Q 011954 196 -----YVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD 270 (474)
Q Consensus 196 -----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 270 (474)
....++..+.+++.|..+.+.+ .+.++++ +.+||||. .+.|.+.... ..+. +++.
T Consensus 154 ~~~~~e~~~~~~ad~ii~~S~~~~~~l----~~~~g~~---i~vi~n~~-~~~f~~~~~~-----------~~~~-~~~~ 213 (371)
T PLN02275 154 LYRWYERHYGKMADGHLCVTKAMQHEL----DQNWGIR---ATVLYDQP-PEFFRPASLE-----------IRLR-PNRP 213 (371)
T ss_pred HHHHHHHHHHhhCCEEEECCHHHHHHH----HHhcCCC---eEEECCCC-HHHcCcCCch-----------hccc-CCCc
Confidence 1122345566666666655554 3345553 88999995 4656543211 0011 1344
Q ss_pred EEEEEecccccCcchHHHHHHHHHHHHHHHHhc----------cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCe
Q 011954 271 LLFAIINSVSRGKGQDLFLHSFYESLQLIREKK----------LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDH 340 (474)
Q Consensus 271 ~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~----------~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (474)
.+++++||+.+.||++.+++|+..+...+...+ ..+|+++|+|+|+|+ ..++++++++++++++
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~-----~~~~l~~~~~~~~l~~- 287 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP-----QKAMYEEKISRLNLRH- 287 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC-----CHHHHHHHHHHcCCCc-
Confidence 678899999999999999999988754322110 024789999999997 7889999999999976
Q ss_pred EEEec-C--CCChHHHHhcCCEEEEcCCC-CCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHH
Q 011954 341 VHFVN-K--TLTVSPYLASIDVLVQNSQA-RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPL 416 (474)
Q Consensus 341 v~~~g-~--~~~~~~~~~~adv~v~ps~~-~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~l 416 (474)
++|.+ + .+++..+|+.||++|+|+.. ..|++|++++||||||+|||+++.||.+|++.++.+|++++ | +++|
T Consensus 288 v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~--~~~l 363 (371)
T PLN02275 288 VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--S--SSEL 363 (371)
T ss_pred eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--C--HHHH
Confidence 87765 4 48999999999999986321 15899999999999999999999999999999999999997 4 8999
Q ss_pred HHHHHHHh
Q 011954 417 ANNIVKLA 424 (474)
Q Consensus 417 a~~i~~ll 424 (474)
+++|.+++
T Consensus 364 a~~i~~l~ 371 (371)
T PLN02275 364 ADQLLELL 371 (371)
T ss_pred HHHHHHhC
Confidence 99998874
No 67
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.9e-29 Score=240.23 Aligned_cols=371 Identities=19% Similarity=0.151 Sum_probs=261.9
Q ss_pred CEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc------------------chh-c
Q 011954 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH------------------KML-D 131 (474)
Q Consensus 75 ~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~------------------~~~-~ 131 (474)
|||++++.+..| ||..-++..|.++|.+.|++|.|+.+..+.........+.. ... .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 789999988555 88889999999999999999999998766322111110000 000 0
Q ss_pred cceee--eeh----h--------------cHHH-------Hh-hh---cCCCEEEEcccchhhHHhHHhhhcccccccce
Q 011954 132 RGVQV--LSA----K--------------GEKA-------IN-TA---LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKV 180 (474)
Q Consensus 132 ~~~~~--~~~----~--------------~~~~-------~~-~~---~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (474)
.++.+ +.. . ++.. .. .- ..|||||+|+..+++....+..........+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 00111 100 0 0000 01 11 36999999987766654443332212234689
Q ss_pred eeeeeccccccch--------------------------hhhhhcccccccccccccccHHHHHHh-----HHHHhcCCC
Q 011954 181 LWWIHEMRGHYFK--------------------------LEYVKHLPFVAGAMIDSYTTAEYWKNR-----TRERLGIRM 229 (474)
Q Consensus 181 v~~~h~~~~~~~~--------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~ 229 (474)
++|+|+..-.... ...+..+..++.+.++|.+.++..... +...+....
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~ 240 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRS 240 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhcc
Confidence 9999975311110 011122345566666666665554411 001111223
Q ss_pred CCeEEEeCCCCccccchhhhhH-----------HHHHhHHHHHHhcCCCC--CCEEEEEecccccCcchHHHHHHHHHHH
Q 011954 230 PETYVVHLGNSKDLMDIAEDSV-----------ARRVLREHVRESLGVRD--DDLLFAIINSVSRGKGQDLFLHSFYESL 296 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vgrl~~~Kg~~~ll~a~~~l~ 296 (474)
.+++-|.||+|.+.+.|..+.. .+...+..+++++|++. +.+.+.++||+..+||+|++++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 7789999999999998765531 25566788999999984 5589999999999999999999999998
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC-hHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT-VSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~-~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+ ..+++++.|.| ++.+++.+..+++.+.. .-....|+.+. ...+|+.+|++++||+ .|+||++-
T Consensus 321 ~---------~~~~~vilG~g---d~~le~~~~~la~~~~~-~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~q 385 (487)
T COG0297 321 E---------QGWQLVLLGTG---DPELEEALRALASRHPG-RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQ 385 (487)
T ss_pred H---------hCceEEEEecC---cHHHHHHHHHHHHhcCc-eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHH
Confidence 7 45999999998 34588999999998865 23344455544 4678999999999999 89999999
Q ss_pred HHHHhcCCCEEEcCCCCcceeeee--------CCceeeecCCCCChHHHHHHHHHHhh---CHHH-HHHHHHHHHHHHHH
Q 011954 376 IEAMAFQLPVLGTAAGGTMEIVVN--------GTTGLLHPTGKEGVTPLANNIVKLAT---HVER-RLTMGKKGYERVKD 443 (474)
Q Consensus 376 ~EAma~G~PvI~s~~~g~~e~v~~--------~~~G~l~~~~d~~~~~la~~i~~ll~---~~~~-~~~~~~~~~~~~~~ 443 (474)
++||..|+++|+..+||..|.|.+ ..+|+++.+.+ +++++.+|.+.+. +++. ++.+..++.. .
T Consensus 386 l~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~--~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~ 460 (487)
T COG0297 386 LYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTN--PDHLANALRRALVLYRAPPLLWRKVQPNAMG---A 460 (487)
T ss_pred HHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---c
Confidence 999999999999999999998875 47999999988 9999999988775 4444 7776666655 6
Q ss_pred hcCHHHHHHHHHHHHHHHHhhh
Q 011954 444 RFLEHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~~~~~ 465 (474)
.|+|+..+++|.++|+.++...
T Consensus 461 d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 461 DFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 7999999999999999998754
No 68
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=5.7e-29 Score=240.35 Aligned_cols=323 Identities=15% Similarity=0.103 Sum_probs=221.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee---------------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS--------------- 138 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 138 (474)
||||+++.... ||.+++..+|+++|.++||+|++++......... ....++.+..
T Consensus 1 ~~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~l 70 (357)
T PRK00726 1 MKKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGMEARL--------VPKAGIEFHFIPSGGLRRKGSLANL 70 (357)
T ss_pred CcEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc--------cccCCCcEEEEeccCcCCCChHHHH
Confidence 48899887544 6888889999999999999999999654211100 0001111111
Q ss_pred ---------hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhccccccccccc
Q 011954 139 ---------AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMID 209 (474)
Q Consensus 139 ---------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (474)
....+++.+..+||+||+|+...... ....... ...|++++.|..... ...+..++..+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~-~~~~~~~---~~~p~v~~~~~~~~~---~~~r~~~~~~d~ii~~ 143 (357)
T PRK00726 71 KAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGP-GGLAARL---LGIPLVIHEQNAVPG---LANKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhH-HHHHHHH---cCCCEEEEcCCCCcc---HHHHHHHHHhchheEC
Confidence 11224455668999999998544332 2222211 234676665543211 1111122344554443
Q ss_pred ccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 210 SYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
+... . . . .+..++++++||++.+.+.+.. .+++++++++.++++++|+....|++..++
T Consensus 144 ~~~~---~----~-~--~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 202 (357)
T PRK00726 144 FPGA---F----P-E--FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAV 202 (357)
T ss_pred chhh---h----h-c--cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHH
Confidence 3311 1 1 1 4678999999999987654321 123456666778888999888888876555
Q ss_pred -HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCC
Q 011954 290 -HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 290 -~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~ 368 (474)
+|+.++.+ . + ..++++|+|+ .+.+.+..+ +++. |.+.|+.+++.++|+.||+++.+|
T Consensus 203 ~~a~~~~~~-------~-~-~~~~~~G~g~------~~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~---- 260 (357)
T PRK00726 203 PEALALLPE-------A-L-QVIHQTGKGD------LEEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRA---- 260 (357)
T ss_pred HHHHHHhhh-------C-c-EEEEEcCCCc------HHHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECC----
Confidence 88877733 1 3 5678899984 355555555 7763 999999999999999999999765
Q ss_pred CCCchHHHHHHhcCCCEEEcCCCCc--------ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 011954 369 ECFGRITIEAMAFQLPVLGTAAGGT--------MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYER 440 (474)
Q Consensus 369 E~~~~~~~EAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~ 440 (474)
.+.+++|||++|+|+|++..++. .+.+.+..+|++++++|.++++|+++|.++++|++.+++|+++++++
T Consensus 261 --g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 261 --GASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred --CHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 26899999999999999986532 24566778999998765448999999999999999999999999998
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 011954 441 VKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~ 459 (474)
+ +.++.+.+++.++++.+
T Consensus 339 ~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 339 G-KPDAAERLADLIEELAR 356 (357)
T ss_pred C-CcCHHHHHHHHHHHHhh
Confidence 6 45999999999888764
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.96 E-value=1.3e-27 Score=236.08 Aligned_cols=333 Identities=17% Similarity=0.143 Sum_probs=216.6
Q ss_pred hhHHHHHHHHHHHhcCcEEEEE-eCCCCCCchhhhhhcccchhccce--eeeeh---hcHHHHhhhcCCCEEEEcccchh
Q 011954 89 GPLLLMELAFLLRGVGAEVVWI-TNQKPNEPDEVIYSLEHKMLDRGV--QVLSA---KGEKAINTALNADLVVLNTAVAG 162 (474)
Q Consensus 89 ~~~~~~~l~~~L~~~G~~V~v~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~DiV~~~~~~~~ 162 (474)
-...+..|++.|.+.++++.++ |...+. ..+... .....++ ...+. .....+.+..+||+||++....
T Consensus 62 e~~~~~~l~~~l~~~~~~~~i~~t~~t~~-~~~~~~----~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~- 135 (425)
T PRK05749 62 ETRAAIPLIRALRKRYPDLPILVTTMTPT-GSERAQ----ALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETEL- 135 (425)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEeCCCcc-HHHHHH----HhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecch-
Confidence 3488999999999987664432 221111 111111 0111122 22222 2455667789999999874322
Q ss_pred hHHhHHhhhcccccccceeeeeecccccc------chhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEe
Q 011954 163 KWLDGVLKDKVSQVLPKVLWWIHEMRGHY------FKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVH 236 (474)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ 236 (474)
|...+.... ....|++.+.|.+.... +.......++.++.+++.|....+.+. .+|++.+ +.+++
T Consensus 136 -~~~~l~~~~--~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~vi~ 206 (425)
T PRK05749 136 -WPNLIAELK--RRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VTVTG 206 (425)
T ss_pred -hHHHHHHHH--HCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cEecc
Confidence 211111111 12245554444322111 111222334556666666666655543 3577666 88998
Q ss_pred CCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcC
Q 011954 237 LGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGS 316 (474)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~ 316 (474)
|+ +.+.+.+... ......+++.++ .++.+++++|+. .|+.+.+++|+.++.+ ++|+++|+|+|+
T Consensus 207 n~-~~d~~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~-------~~~~~~liivG~ 270 (425)
T PRK05749 207 NL-KFDIEVPPEL----AARAATLRRQLA--PNRPVWIAASTH--EGEEELVLDAHRALLK-------QFPNLLLILVPR 270 (425)
T ss_pred cc-cccCCCChhh----HHHHHHHHHHhc--CCCcEEEEeCCC--chHHHHHHHHHHHHHH-------hCCCcEEEEcCC
Confidence 85 3333222111 111355677776 355667778763 6889999999998865 458999999999
Q ss_pred CCCcCchHH-HHHHHHHHHcCCCC-------------eEEEecCCCChHHHHhcCCEEEE-cCCCCCCCCchHHHHHHhc
Q 011954 317 DMNAQTKFE-TELRNFVAEKKIQD-------------HVHFVNKTLTVSPYLASIDVLVQ-NSQARGECFGRITIEAMAF 381 (474)
Q Consensus 317 g~~~~~~~~-~~l~~~~~~~~l~~-------------~v~~~g~~~~~~~~~~~adv~v~-ps~~~~E~~~~~~~EAma~ 381 (474)
|+ .+ ++++++++++|+.. +|.+.+...++..+|+.||++++ +|. .|++|.+++|||+|
T Consensus 271 g~-----~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEAma~ 343 (425)
T PRK05749 271 HP-----ERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEPAAF 343 (425)
T ss_pred Ch-----hhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHHHHh
Confidence 86 43 78999999988742 34444445689999999999655 666 79999999999999
Q ss_pred CCCEEEcCC-CCcceeeee-CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 382 QLPVLGTAA-GGTMEIVVN-GTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 382 G~PvI~s~~-~g~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
|+|||+++. ++..|+++. .++|.+++++| +++|+++|.++++|++.+++|+++|++++.++ ....+++.+.+.
T Consensus 344 G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~~~~~~~~~l~ 418 (425)
T PRK05749 344 GVPVISGPHTFNFKEIFERLLQAGAAIQVED--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QGALQRTLQLLE 418 (425)
T ss_pred CCCEEECCCccCHHHHHHHHHHCCCeEEECC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHH
Confidence 999999875 556666544 24688888888 99999999999999999999999999999775 366677777777
Q ss_pred HHHhh
Q 011954 460 EVLQY 464 (474)
Q Consensus 460 ~~~~~ 464 (474)
+.+++
T Consensus 419 ~~l~~ 423 (425)
T PRK05749 419 PYLPP 423 (425)
T ss_pred Hhccc
Confidence 76653
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=1.3e-27 Score=232.80 Aligned_cols=337 Identities=12% Similarity=0.072 Sum_probs=224.4
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCCCCCc---hhhh---h--------hcccchhccceee-
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQKPNEP---DEVI---Y--------SLEHKMLDRGVQV- 136 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~---~~~~---~--------~~~~~~~~~~~~~- 136 (474)
++||||+++..+ ||| ...+..++++|.++|++|+++++...... .... | .+...........
T Consensus 3 ~~~rili~t~~~--G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHY--GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCC--CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 578999999766 544 57899999999999999777764432211 0100 0 0000000000000
Q ss_pred ----------eehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccc
Q 011954 137 ----------LSAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGA 206 (474)
Q Consensus 137 ----------~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (474)
........+.+..+||+||++.+..... .+.... ....|++..+++... ......+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~--~~~ip~~~~~td~~~-----~~~~~~~~ad~i 151 (380)
T PRK13609 81 DKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP--ELKKQT--GISIPTYNVLTDFCL-----HKIWVHREVDRY 151 (380)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH--HHHHhc--CCCCCeEEEeCCCCC-----CcccccCCCCEE
Confidence 0013445666778999999987654432 222211 123455544443211 111223466777
Q ss_pred cccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC-EEEEEecccccCcch
Q 011954 207 MIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD-LLFAIINSVSRGKGQ 285 (474)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vgrl~~~Kg~ 285 (474)
++.+....+.+. .+|++.+++.+++++++..+..+.. +..+++++++++++ +++++.|++...|++
T Consensus 152 ~~~s~~~~~~l~-----~~gi~~~ki~v~G~p~~~~f~~~~~--------~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 152 FVATDHVKKVLV-----DIGVPPEQVVETGIPIRSSFELKIN--------PDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred EECCHHHHHHHH-----HcCCChhHEEEECcccChHHcCcCC--------HHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 776666544443 3588888999988777654322211 23468889997665 566667888888999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEcC-CCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcC
Q 011954 286 DLFLHSFYESLQLIREKKLQVPSMHAVVVGS-DMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNS 364 (474)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~-g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps 364 (474)
+.+++++.+. ++++++++|+ +. ...+.+++++++++ ++|+|+|+++++.++|+.||++|.
T Consensus 219 ~~li~~l~~~-----------~~~~~viv~G~~~----~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~-- 279 (380)
T PRK13609 219 KELCQSLMSV-----------PDLQVVVVCGKNE----ALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT-- 279 (380)
T ss_pred HHHHHHHhhC-----------CCcEEEEEeCCCH----HHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe--
Confidence 9998887532 6789887754 32 25677888777665 689999999999999999999983
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEcC-CCCcc----eeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 011954 365 QARGECFGRITIEAMAFQLPVLGTA-AGGTM----EIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYE 439 (474)
Q Consensus 365 ~~~~E~~~~~~~EAma~G~PvI~s~-~~g~~----e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~ 439 (474)
++.|++++|||+||+|||+++ .+|.. +++. ++|..+...| +++++++|.++++|++.+++|++++++
T Consensus 280 ----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 280 ----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred ----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 345899999999999999986 55531 2332 3455555666 999999999999999999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 011954 440 RVKDRFLEHHMSQRIALVLREV 461 (474)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~ 461 (474)
.... ++++.+++.+++.+...
T Consensus 352 ~~~~-~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 352 LYLP-EPADHIVDDILAENHVE 372 (380)
T ss_pred hCCC-chHHHHHHHHHHhhhhh
Confidence 6644 89999999998887654
No 71
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.96 E-value=1.4e-27 Score=230.36 Aligned_cols=317 Identities=15% Similarity=0.132 Sum_probs=210.3
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeee-------------------
Q 011954 77 VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVL------------------- 137 (474)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 137 (474)
|++.+. ..||..+++.+++++|.++||+|++++............ ..+.-..+...
T Consensus 2 ~~~~~~--~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 2 ILIAGG--GTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPK---AGIPLHTIPVGGLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred EEEEec--CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccc---cCCceEEEEecCcCCCChHHHHHHHHHHHH
Confidence 555553 336778899999999999999999998654321110000 00000011100
Q ss_pred ehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHH
Q 011954 138 SAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYW 217 (474)
Q Consensus 138 ~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 217 (474)
......++.+..+||+||+|+...+........ . ...|++.+.|..... ..........+.+++.+....++
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~-~---~~~p~v~~~~~~~~~---~~~~~~~~~~~~vi~~s~~~~~~- 148 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGFGGYVSGPVGLAAK-L---LGIPLVIHEQNAVPG---LANRLLARFADRVALSFPETAKY- 148 (350)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcchHHHHHHH-H---hCCCEEEEcCCCCcc---HHHHHHHHhhCEEEEcchhhhhc-
Confidence 011233445668999999997554432222111 1 123555544432211 11111123345555544433322
Q ss_pred HHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHH-HHHHHHHHH
Q 011954 218 KNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDL-FLHSFYESL 296 (474)
Q Consensus 218 ~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~ 296 (474)
++..++.+|+||+|.+.+.+.. . ++++++++++++++++|+....|+.+. +++++..+.
T Consensus 149 ---------~~~~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~ 208 (350)
T cd03785 149 ---------FPKDKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL 208 (350)
T ss_pred ---------CCCCcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh
Confidence 3567899999999988765321 1 667788888888888887777777654 457777663
Q ss_pred HHHHHhccCCCcEE-EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 297 QLIREKKLQVPSMH-AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~-l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+ ++++ ++++|+| ..+++++.++++ .++|+|.|+.+++.++|+.||++|.+|- ++++
T Consensus 209 ~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg------~~t~ 265 (350)
T cd03785 209 R---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG------ASTV 265 (350)
T ss_pred c---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC------HhHH
Confidence 2 4566 4577887 356777777776 4689999999999999999999997551 6899
Q ss_pred HHHHhcCCCEEEcCCCC--------cceeeeeCCceeeecCC--CCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 011954 376 IEAMAFQLPVLGTAAGG--------TMEIVVNGTTGLLHPTG--KEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRF 445 (474)
Q Consensus 376 ~EAma~G~PvI~s~~~g--------~~e~v~~~~~G~l~~~~--d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~f 445 (474)
+|||++|+|||+++.++ ..+.+.+..+|++++++ | +++++++|..+++|++.+++|++++++++. .+
T Consensus 266 ~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~-~~ 342 (350)
T cd03785 266 AELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELT--PERLAAALLELLSDPERLKAMAEAARSLAR-PD 342 (350)
T ss_pred HHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CC
Confidence 99999999999987654 23556667799999986 6 999999999999999999999999998775 36
Q ss_pred CHHHHHH
Q 011954 446 LEHHMSQ 452 (474)
Q Consensus 446 s~~~~~~ 452 (474)
..+++++
T Consensus 343 ~~~~i~~ 349 (350)
T cd03785 343 AAERIAD 349 (350)
T ss_pred HHHHHHh
Confidence 6666553
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=8e-28 Score=237.28 Aligned_cols=292 Identities=15% Similarity=0.085 Sum_probs=196.2
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-------hhhhhcccccccccccccccHHHHHHhH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-------LEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
...|+|++|+...... ..+++...+ ..+++++.|...+.... ....+.+-.++.+...+....+.+....
T Consensus 130 ~~~d~iwihDyhl~ll-p~~lr~~~~--~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLL-PQMLRERGP--DARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHH-HHHHHhhCC--CCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 4679999999754433 333443332 24788888854322211 0111222222332222222222222222
Q ss_pred HHHhcC------------CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 222 RERLGI------------RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 222 ~~~~~~------------~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
...++. ...++.++|||||.+.|.+..... ..++.+++..+...++++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASP---EVQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCc---hhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222221 224689999999999987653221 11223334444556788999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc----hHHHHHHHHHHHcCCC------CeEEEe-cC--CCChHHHHhc
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT----KFETELRNFVAEKKIQ------DHVHFV-NK--TLTVSPYLAS 356 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~----~~~~~l~~~~~~~~l~------~~v~~~-g~--~~~~~~~~~~ 356 (474)
+|++++.+...+. ..+++|+++|.+...+. ++.+++++++.+++.. ..|+++ |+ .+++..+|+.
T Consensus 284 ~A~~~ll~~~p~~---~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 284 LAFERLLERYPEW---RGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 9999887632110 01367898876532221 2344555555444321 235554 54 4899999999
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHhcCCC----EEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHH
Q 011954 357 IDVLVQNSQARGECFGRITIEAMAFQLP----VLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRL 431 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~ 431 (474)
||++|+||. .||||++++|||+||+| ||+|+.+|..+. +.+|+++++.| +++++++|.++++ +++.++
T Consensus 361 aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d--~~~la~ai~~~l~~~~~e~~ 433 (460)
T cd03788 361 ADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYD--IDEVADAIHRALTMPLEERR 433 (460)
T ss_pred ccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCC--HHHHHHHHHHHHcCCHHHHH
Confidence 999999999 89999999999999999 999998888776 46899999999 9999999999998 557888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011954 432 TMGKKGYERVKDRFLEHHMSQRIALV 457 (474)
Q Consensus 432 ~~~~~~~~~~~~~fs~~~~~~~~~~~ 457 (474)
.+++++++++.+ |+++.+++++++-
T Consensus 434 ~~~~~~~~~v~~-~~~~~w~~~~l~~ 458 (460)
T cd03788 434 ERHRKLREYVRT-HDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHh
Confidence 889999998855 9999999998754
No 73
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.96 E-value=2.2e-27 Score=229.37 Aligned_cols=303 Identities=16% Similarity=0.129 Sum_probs=197.2
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc--hh---hh-------------------h-----hc
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF--KL---EY-------------------V-----KH 199 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--~~---~~-------------------~-----~~ 199 (474)
.++|++|+|...++..+..+... . ...++|.|.|....... .. .+ + ..
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~-~--~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKR-K--VDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHh-C--CCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 67999999987766554443332 2 23489999997542221 00 00 0 11
Q ss_pred ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhH---------HHHHhHHHHHHhcCCCCCC
Q 011954 200 LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSV---------ARRVLREHVRESLGVRDDD 270 (474)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~---------~~~~~~~~~r~~~~~~~~~ 270 (474)
...++.++ ++++..+......|+.++++ |||||+|.+.|....+.. ..+..+..++..++++.++
T Consensus 224 a~~Ad~ft----tVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFT----TVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEE----ECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 12233344 44455555556677888776 999999999987654221 0112234467778887777
Q ss_pred EEEEE-eccccc-CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC-------chHH----------------
Q 011954 271 LLFAI-INSVSR-GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ-------TKFE---------------- 325 (474)
Q Consensus 271 ~~i~~-vgrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~-------~~~~---------------- 325 (474)
.++++ +||++. +||+|.+|+|+.++-..++..+.+..=+-|+|+-.+...- ....
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77666 799998 9999999999999988777644222223444443331100 0001
Q ss_pred ---------------------------------------------------HHHHHHHHHcCCC----Ce--EEEecC--
Q 011954 326 ---------------------------------------------------TELRNFVAEKKIQ----DH--VHFVNK-- 346 (474)
Q Consensus 326 ---------------------------------------------------~~l~~~~~~~~l~----~~--v~~~g~-- 346 (474)
+.+-..++++++. ++ |+|++.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 1111222222232 22 555551
Q ss_pred -------CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeC-CceeeecCCC----
Q 011954 347 -------TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNG-TTGLLHPTGK---- 410 (474)
Q Consensus 347 -------~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~~~d---- 410 (474)
-.+..++|+.||++|+||. +||||++++||||||+|||+|+.+|. .|++.++ ..|+++.+.+
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~ 535 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSP 535 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccch
Confidence 1457889999999999999 89999999999999999999999988 5666544 3577775322
Q ss_pred -CChHHHHHHHHHHhhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 411 -EGVTPLANNIVKLATHVERRLTMGKKGY-ERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 411 -~~~~~la~~i~~ll~~~~~~~~~~~~~~-~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+++++|+++|.++++. +.++++.++++ +...+.|+|+++++.|.+.|..++.
T Consensus 536 ~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 536 DESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 1288999999998854 56666666544 3445679999999999999998875
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.96 E-value=2.4e-27 Score=231.69 Aligned_cols=289 Identities=17% Similarity=0.155 Sum_probs=199.7
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-------hhhhhhcccccccccccccccHHHHHHhH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-------KLEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
..-|+|.+|+..... +..+++...+. .++.+..|...+... .....+.+-.+|-+-..+....+.+....
T Consensus 126 ~~~d~vwvhDYhl~l-~p~~lr~~~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLML-LPAMLRELGVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhH-HHHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 345899999865433 34444444433 467777885432211 11122223333333333333333333333
Q ss_pred HHHhcC-----------CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHH
Q 011954 222 RERLGI-----------RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLH 290 (474)
Q Consensus 222 ~~~~~~-----------~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~ 290 (474)
.+.++. ...++.++|||||.+.|.+.............+|+++ .++.+|+++||+++.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEccccccccCHHHHHH
Confidence 333332 3456899999999999976543322222234577776 36678999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCc----EEEEEEcCCCCcCchHHHHHHHHHHHc--------CCCC--eEEEec-C--CCChHHH
Q 011954 291 SFYESLQLIREKKLQVPS----MHAVVVGSDMNAQTKFETELRNFVAEK--------KIQD--HVHFVN-K--TLTVSPY 353 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~----~~l~i~G~g~~~~~~~~~~l~~~~~~~--------~l~~--~v~~~g-~--~~~~~~~ 353 (474)
|++++.+ ++|+ +.|+++|.....+.+...++++.++++ +..+ .+++++ . .+++.++
T Consensus 280 A~~~ll~-------~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 280 AFERFLE-------EHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHH-------hCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 9999876 3354 668877642222222455555555543 1111 155554 3 4899999
Q ss_pred HhcCCEEEEcCCCCCCCCchHHHHHHhcCCC----EEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHH
Q 011954 354 LASIDVLVQNSQARGECFGRITIEAMAFQLP----VLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVE 428 (474)
Q Consensus 354 ~~~adv~v~ps~~~~E~~~~~~~EAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~ 428 (474)
|+.||++|+||. .||||++++||||||+| +|+|+.+|..+.+. +|+++++.| ++++|++|.++++ +++
T Consensus 353 y~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d--~~~lA~aI~~aL~~~~~ 425 (456)
T TIGR02400 353 YRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYD--IDGMADAIARALTMPLE 425 (456)
T ss_pred HHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCC--HHHHHHHHHHHHcCCHH
Confidence 999999999999 99999999999999999 99999999888773 799999999 9999999999998 778
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 429 RRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
.++++.++.++++.+ ||+..+++++++-+
T Consensus 426 er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 426 EREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 899999999999876 99999999988654
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=2.6e-27 Score=228.29 Aligned_cols=313 Identities=14% Similarity=0.127 Sum_probs=204.3
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeee--e--------------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVL--S-------------- 138 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------- 138 (474)
|||+++.... ||......+|+++|.++||+|++++........ . . ...++.+. +
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~-~----~---~~~g~~~~~i~~~~~~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEKR-L----V---PKAGIEFYFIPVGGLRRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhc-c----c---ccCCCceEEEeccCcCCCChHHHHH
Confidence 5788887543 454455679999999999999999854321100 0 0 00111111 0
Q ss_pred --------hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccc
Q 011954 139 --------AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDS 210 (474)
Q Consensus 139 --------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (474)
.....++.+..+||+||+|.......... ..... ..|++.+.+... .........+.++.+++.+
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~-~~~~~---~~p~v~~~~~~~---~~~~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGL-AAKLL---GIPLFHHEQNAV---PGLTNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHH-HHHHc---CCCEEEECCCCC---ccHHHHHHHHHhCeeEECc
Confidence 11234456678999999997654333221 11111 234543333211 1111122234556666655
Q ss_pred cccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHH-HH
Q 011954 211 YTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDL-FL 289 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~-ll 289 (474)
....+++ +..+|+||++...+.+.. .++.++++++.++++++|+....|++.. ++
T Consensus 144 ~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~ 199 (348)
T TIGR01133 144 PGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELVP 199 (348)
T ss_pred hhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHHH
Confidence 5443332 247999999877654321 1234677778888999998877888654 55
Q ss_pred HHHHHHHHHHHHhccCCCcEEEE-EEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCC
Q 011954 290 HSFYESLQLIREKKLQVPSMHAV-VVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~-i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~ 368 (474)
++++++.+ .+++++ ++|++ ..+.+++.++++++.+.+.|. .. ++.++|+.||++|.+|
T Consensus 200 ~a~~~l~~---------~~~~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~---- 258 (348)
T TIGR01133 200 KALAKLAE---------KGIQIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRA---- 258 (348)
T ss_pred HHHHHHhh---------cCcEEEEECCcc------hHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECC----
Confidence 78877643 345554 44544 347888888888876666666 33 8999999999999754
Q ss_pred CCCchHHHHHHhcCCCEEEcCCCCc-------ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 011954 369 ECFGRITIEAMAFQLPVLGTAAGGT-------MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERV 441 (474)
Q Consensus 369 E~~~~~~~EAma~G~PvI~s~~~g~-------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 441 (474)
.|++++|||++|+|+|+++.++. .+++.++.+|++++++|.++++++++|.++++|++.+++|++++++++
T Consensus 259 --g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 259 --GASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred --ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC
Confidence 27899999999999999987642 357778889999987643489999999999999999999999998876
Q ss_pred HHhcCHHHHHH
Q 011954 442 KDRFLEHHMSQ 452 (474)
Q Consensus 442 ~~~fs~~~~~~ 452 (474)
.+ +..+++++
T Consensus 337 ~~-~~~~~i~~ 346 (348)
T TIGR01133 337 KP-DAAKRIAE 346 (348)
T ss_pred Cc-cHHHHHHh
Confidence 54 55555543
No 76
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.95 E-value=2.3e-27 Score=204.46 Aligned_cols=169 Identities=29% Similarity=0.505 Sum_probs=153.2
Q ss_pred HHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC
Q 011954 257 REHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKK 336 (474)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~ 336 (474)
++..+...+.+.++++|+++||+.+.||++.+++++..+.+.. .+++.|+|+|.+. +...++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~------~~~~~l~i~G~~~-----~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKK------NPNYKLVIVGDGE-----YKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHH------HTTEEEEEESHCC-----HHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhc------CCCeEEEEEcccc-----ccccccccccccc
Confidence 5677888888899999999999999999999999999986531 2899999999764 7888999999999
Q ss_pred CCCeEEEecCCC--ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChH
Q 011954 337 IQDHVHFVNKTL--TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVT 414 (474)
Q Consensus 337 l~~~v~~~g~~~--~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (474)
+.++++|+|+.. ++..+|+.||++|+||. .|++|++++|||++|+|||+++.|+..|++.++.+|+++++.+ ++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~--~~ 146 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPND--IE 146 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTS--HH
T ss_pred ccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeeccccceEEeCCCC--HH
Confidence 999999999875 99999999999999999 8999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 011954 415 PLANNIVKLATHVERRLTMGKKGYER 440 (474)
Q Consensus 415 ~la~~i~~ll~~~~~~~~~~~~~~~~ 440 (474)
+++++|.+++++++.++.|+++++++
T Consensus 147 ~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 147 ELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999975
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.95 E-value=4.7e-26 Score=221.18 Aligned_cols=275 Identities=12% Similarity=0.069 Sum_probs=189.5
Q ss_pred HHHHhhhcCCCEEEEcccchhh----HHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHH
Q 011954 142 EKAINTALNADLVVLNTAVAGK----WLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYW 217 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 217 (474)
+.++++..+||+||++.++... .+....... ....|++..+.+.... ......+.++.+++.+....+.+
T Consensus 92 l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~--~~~~p~~~~~tD~~~~----~~~w~~~~~d~~~~~s~~~~~~l 165 (382)
T PLN02605 92 VAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKEL--GKKIPFTTVVTDLGTC----HPTWFHKGVTRCFCPSEEVAKRA 165 (382)
T ss_pred HHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhcc--CCCCCEEEEECCCCCc----CcccccCCCCEEEECCHHHHHHH
Confidence 3456667899999997766322 222211111 1234666656554211 11222356666666665544433
Q ss_pred HHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHH
Q 011954 218 KNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQ 297 (474)
Q Consensus 218 ~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~ 297 (474)
. .+|++.+++.+++++++.+++.+... +..+|+++|++++.++|+++|+....|++..+++++..+..
T Consensus 166 ~-----~~g~~~~ki~v~g~~v~~~f~~~~~~-------~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~ 233 (382)
T PLN02605 166 L-----KRGLEPSQIRVYGLPIRPSFARAVRP-------KDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLY 233 (382)
T ss_pred H-----HcCCCHHHEEEECcccCHhhccCCCC-------HHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhc
Confidence 2 45888899999999998776543221 45689999999888999999999999999999999876431
Q ss_pred HHHHhccCCCcEE-EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 298 LIREKKLQVPSMH-AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 298 ~~~~~~~~~~~~~-l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
.... ..++.+ ++++|.+. +..+.+++. ....+|+|+|+++++.++|+.||++|.++ .|++++
T Consensus 234 ~~~~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~ 296 (382)
T PLN02605 234 DKNL---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIA 296 (382)
T ss_pred cccc---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHH
Confidence 0000 124565 66778662 234444443 22357999999999999999999999654 478999
Q ss_pred HHHhcCCCEEEcCC------CCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHH
Q 011954 377 EAMAFQLPVLGTAA------GGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH-VERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 377 EAma~G~PvI~s~~------~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
|||+||+|+|+++. |+...++ ++..|++. +| +++++++|.++++| ++.+++|++++++.... .+.+.
T Consensus 297 EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~-~a~~~ 370 (382)
T PLN02605 297 EALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLARP-EAVFD 370 (382)
T ss_pred HHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-chHHH
Confidence 99999999999984 4444344 45567654 56 99999999999997 99999999999987755 67777
Q ss_pred HHHHHHHH
Q 011954 450 MSQRIALV 457 (474)
Q Consensus 450 ~~~~~~~~ 457 (474)
+++.+.+.
T Consensus 371 i~~~l~~~ 378 (382)
T PLN02605 371 IVHDLHEL 378 (382)
T ss_pred HHHHHHHH
Confidence 77766654
No 78
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=1.6e-25 Score=217.75 Aligned_cols=341 Identities=11% Similarity=0.104 Sum_probs=214.9
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcC---cEEEEEeCC--CCCCchhhhh--------hccc----chhccce
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVG---AEVVWITNQ--KPNEPDEVIY--------SLEH----KMLDRGV 134 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G---~~V~v~~~~--~~~~~~~~~~--------~~~~----~~~~~~~ 134 (474)
++||||+++..+ ||| -+....|.++|.+.| ++|.++-.- ..+....... ..+. .......
T Consensus 4 ~~~~vlil~~~~--G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~ 81 (391)
T PRK13608 4 QNKKILIITGSF--GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPD 81 (391)
T ss_pred CCceEEEEECCC--CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCch
Confidence 468999999554 555 477889999998876 455544311 1111111000 0000 0000000
Q ss_pred -------eeeehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhccccccccc
Q 011954 135 -------QVLSAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAM 207 (474)
Q Consensus 135 -------~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (474)
..........+.+..+||+||++.+.+.. ..+.... ....|++....+... ...| ..+.++.++
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~--~~l~~~~--~~~iP~~~v~td~~~---~~~w--~~~~~d~~~ 152 (391)
T PRK13608 82 KLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVM--SVLTEQF--NINIPVATVMTDYRL---HKNW--ITPYSTRYY 152 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHH--HHHHHhc--CCCCCEEEEeCCCCc---cccc--ccCCCCEEE
Confidence 00111344566677999999998665432 2222111 123455443333211 1111 224556666
Q ss_pred ccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC-EEEEEecccccCcchH
Q 011954 208 IDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD-LLFAIINSVSRGKGQD 286 (474)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vgrl~~~Kg~~ 286 (474)
+.+....+.+. ..|++.+++.+++++++..+..... +..+++++++++++ .++++.|++...||++
T Consensus 153 v~s~~~~~~l~-----~~gi~~~ki~v~GiPv~~~f~~~~~--------~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~ 219 (391)
T PRK13608 153 VATKETKQDFI-----DVGIDPSTVKVTGIPIDNKFETPID--------QKQWLIDNNLDPDKQTILMSAGAFGVSKGFD 219 (391)
T ss_pred ECCHHHHHHHH-----HcCCCHHHEEEECeecChHhccccc--------HHHHHHHcCCCCCCCEEEEECCCcccchhHH
Confidence 55555444433 3578888999998888755432221 34567788987655 4566789999889999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCC
Q 011954 287 LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~ 366 (474)
.+++++.+ ..+++++++++++.. +..++++ +.++..++|+++|+++++.++|+.||++|.
T Consensus 220 ~li~~~~~----------~~~~~~~vvv~G~~~---~l~~~l~---~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~---- 279 (391)
T PRK13608 220 TMITDILA----------KSANAQVVMICGKSK---ELKRSLT---AKFKSNENVLILGYTKHMNEWMASSQLMIT---- 279 (391)
T ss_pred HHHHHHHh----------cCCCceEEEEcCCCH---HHHHHHH---HHhccCCCeEEEeccchHHHHHHhhhEEEe----
Confidence 99998532 226788876644320 1223333 334445689999999999999999999994
Q ss_pred CCCCCchHHHHHHhcCCCEEEcCC-CCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 011954 367 RGECFGRITIEAMAFQLPVLGTAA-GGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERV 441 (474)
Q Consensus 367 ~~E~~~~~~~EAma~G~PvI~s~~-~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 441 (474)
.+.|+++.|||++|+|+|+++. +|. ..++.+...|+. .+| +++++++|.++++|++.+++|++++++..
T Consensus 280 --k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 280 --KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADT--PEEAIKIVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred --CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3468999999999999999964 331 112223344544 345 89999999999999999999999999976
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhh
Q 011954 442 KDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
.. |+++.+++.+++++..+.+.
T Consensus 354 ~~-~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 354 IK-YATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred CC-CCHHHHHHHHHHHhhhhhhh
Confidence 65 99999999999988766543
No 79
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.94 E-value=8.1e-25 Score=226.81 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=204.5
Q ss_pred CCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-------hhhhhhcccccccccccccccHHHHHHhHH
Q 011954 150 NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-------KLEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
.-|+|.+|+.... .+..+++...+. .++.+..|...+... ...+.+.+-.++-+-..+....+.+.+...
T Consensus 147 ~~d~vWvhDYhL~-llp~~lR~~~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~ 223 (797)
T PLN03063 147 EGDVVWCHDYHLM-FLPQYLKEYNNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACT 223 (797)
T ss_pred CCCEEEEecchhh-hHHHHHHHhCCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHH
Confidence 4479999985443 334455555544 477777886533221 111222232333333333333333333333
Q ss_pred HHhcC-----------CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHH
Q 011954 223 ERLGI-----------RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHS 291 (474)
Q Consensus 223 ~~~~~-----------~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a 291 (474)
..++. ...++.++|||||.+.|.+.............+++.++ ++.+|+++||+++.||++.+++|
T Consensus 224 r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~A 300 (797)
T PLN03063 224 RILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLA 300 (797)
T ss_pred HHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHH
Confidence 23332 22568999999999988765332211122335566553 56788999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcE----EEEEEcCCCCcCchHHHHHHHHHHHcC--CCC--------eEEEec-C--CCChHHHH
Q 011954 292 FYESLQLIREKKLQVPSM----HAVVVGSDMNAQTKFETELRNFVAEKK--IQD--------HVHFVN-K--TLTVSPYL 354 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~----~l~i~G~g~~~~~~~~~~l~~~~~~~~--l~~--------~v~~~g-~--~~~~~~~~ 354 (474)
++++.+ ++|++ .|+.++.....+.+..+++++.++++. +.. .|++++ . .+++..+|
T Consensus 301 fe~lL~-------~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 301 FEKFLE-------ENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHH-------hCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 999876 34554 455444322122235566777776653 222 133343 2 37899999
Q ss_pred hcCCEEEEcCCCCCCCCchHHHHHHhcCCC----EEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHH
Q 011954 355 ASIDVLVQNSQARGECFGRITIEAMAFQLP----VLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVER 429 (474)
Q Consensus 355 ~~adv~v~ps~~~~E~~~~~~~EAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (474)
+.||+||+||. .||+|++++||||||+| +|+|..+|..+.+ +.+|++++|.| ++++|++|.++++ ++++
T Consensus 374 ~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 447 (797)
T PLN03063 374 AITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWN--ITEVSSAIKEALNMSDEE 447 (797)
T ss_pred HhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCC--HHHHHHHHHHHHhCCHHH
Confidence 99999999999 99999999999999999 9999999998876 66899999999 9999999999999 8888
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 430 RLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
++++.+..++++.+ ++|...++.+++.++++..+
T Consensus 448 r~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 448 RETRHRHNFQYVKT-HSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHhhh
Confidence 88888999998877 99999999999999888654
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.92 E-value=8e-24 Score=190.89 Aligned_cols=224 Identities=26% Similarity=0.267 Sum_probs=163.2
Q ss_pred EEEEecCCC--CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEE
Q 011954 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLV 154 (474)
Q Consensus 77 Il~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (474)
|+++++... .||.+++...+++.|.++||+|++++ ..........+..+||+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~-------------------------~~~~~~~~~~~~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA-------------------------LLLLLLLRILRGFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE-------------------------echHHHHHHHhhcCCCEE
Confidence 466666655 47778999999999999999999998 111123334446799999
Q ss_pred EEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEE
Q 011954 155 VLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYV 234 (474)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~v 234 (474)
|+|+............ .....+++++.|+........... ......
T Consensus 56 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~h~~~~~~~~~~~~-----------------~~~~~~-------------- 101 (229)
T cd01635 56 HAHGYYPAPLALLLAA---RLLGIPLVLTVHGVNRSLLEGVPL-----------------SLLALS-------------- 101 (229)
T ss_pred EEcCCCcHHHHHHHHH---hhCCCCEEEEEcCccHhhcccCcH-----------------HHHHHH--------------
Confidence 9998766554431111 123468889999764332211000 000000
Q ss_pred EeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEE
Q 011954 235 VHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVV 314 (474)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~ 314 (474)
. ......++|++.+.||++.+++++.++.+ +.++++++++
T Consensus 102 -------------------------~--------~~~~~~~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~ 141 (229)
T cd01635 102 -------------------------I--------GLADKVFVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIA 141 (229)
T ss_pred -------------------------H--------hhcceEEEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEE
Confidence 0 00011189999999999999999999865 3479999999
Q ss_pred cCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC---CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 315 GSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT---LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 315 G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
|.+. .....+..+.+++..++|.++|+. +++..+++.||++++||. .|++|++++|||++|+|+|+|+.+
T Consensus 142 G~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 142 GDGP-----EREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred eCCC-----ChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCC
Confidence 9985 445555556777888999999983 556667777999999999 899999999999999999999999
Q ss_pred CcceeeeeCCceeee
Q 011954 392 GTMEIVVNGTTGLLH 406 (474)
Q Consensus 392 g~~e~v~~~~~G~l~ 406 (474)
+..|++.++++|+++
T Consensus 215 ~~~e~i~~~~~g~~~ 229 (229)
T cd01635 215 GPPEIVEDGLTGLLV 229 (229)
T ss_pred CcceEEECCCceEEC
Confidence 999999899999875
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.92 E-value=1.6e-23 Score=218.02 Aligned_cols=294 Identities=16% Similarity=0.165 Sum_probs=195.3
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-------hhhhhcccccccccccccccHHHHHHhH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-------LEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
..-|+|.+|+...... ..+++...+. .++.+..|-..+.... ....+.+-.+|-+-..+....+.+....
T Consensus 132 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 132 RPGDVVWVHDYQLMLL-PAMLRERLPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCCCEEEEeCchhhhH-HHHHHhhCCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998654433 3444444433 4677777764332211 1112222222222222222233333333
Q ss_pred HHHhcC-----------CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHH
Q 011954 222 RERLGI-----------RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLH 290 (474)
Q Consensus 222 ~~~~~~-----------~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~ 290 (474)
.+.++. ...++.++|||||.+.|.+...........+++|+.+ .++.+|+++||+++.||++.+++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~ 285 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLL 285 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHH
Confidence 333321 1235899999999999987643222122234456554 46678999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCc----EEEEEEcCCCCcC----chHHHHHHHHHHHcC-------CCCeEEEecC--CCChHHH
Q 011954 291 SFYESLQLIREKKLQVPS----MHAVVVGSDMNAQ----TKFETELRNFVAEKK-------IQDHVHFVNK--TLTVSPY 353 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~----~~l~i~G~g~~~~----~~~~~~l~~~~~~~~-------l~~~v~~~g~--~~~~~~~ 353 (474)
|+.++.+ ++|+ ++|+++|.+.... .++..++.+++.+.+ ..+.+.|.|+ .+++..+
T Consensus 286 A~~~ll~-------~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~l 358 (726)
T PRK14501 286 AFERFLE-------KNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHH-------hCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHH
Confidence 9999876 3354 7899887432221 123344444443322 1123456664 4899999
Q ss_pred HhcCCEEEEcCCCCCCCCchHHHHHHhcC-----CCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC-H
Q 011954 354 LASIDVLVQNSQARGECFGRITIEAMAFQ-----LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH-V 427 (474)
Q Consensus 354 ~~~adv~v~ps~~~~E~~~~~~~EAma~G-----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~ 427 (474)
|+.||++|+||. .||||++++|||||| .||++...|+..+++ .|++++|.| +++++++|.+++++ +
T Consensus 359 y~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d--~~~la~ai~~~l~~~~ 430 (726)
T PRK14501 359 YRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPND--IEGIAAAIKRALEMPE 430 (726)
T ss_pred HHhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCC--HHHHHHHHHHHHcCCH
Confidence 999999999999 999999999999994 567777778888875 489999999 99999999999984 4
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 428 ERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
+.+.+..+++++++. +|||+.+++++++.|+++..+
T Consensus 431 ~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 431 EEQRERMQAMQERLR-RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 455555677888875 599999999999999998654
No 82
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.92 E-value=1.9e-23 Score=202.35 Aligned_cols=332 Identities=12% Similarity=0.007 Sum_probs=196.7
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC-CCchhhhhhcccchh---ccce-------eeeehh-----
Q 011954 77 VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP-NEPDEVIYSLEHKML---DRGV-------QVLSAK----- 140 (474)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~---~~~~-------~~~~~~----- 140 (474)
++++......++....-..++..|.+.||.|.++..... ............... .... ...+..
T Consensus 6 ~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
T cd04950 6 DILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPRGRDWVRVVLRLRAALRRPRRLDPLIPARRRRLLR 85 (373)
T ss_pred eEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCCCcccEEeeecccccccCccccCccccchhhhHHH
Confidence 334433334455556677888889889999999986542 111110000000000 0000 000000
Q ss_pred -cH--HHHh----hhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch--h----hhhhccccccccc
Q 011954 141 -GE--KAIN----TALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK--L----EYVKHLPFVAGAM 207 (474)
Q Consensus 141 -~~--~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--~----~~~~~~~~~~~~~ 207 (474)
.+ .... ...+..+++.+.+....+... . ...++++++++....... . .....++.++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~-----~--~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~~~~ad~vi 158 (373)
T cd04950 86 LLLNALLFWAQLELGFGRPILWYYTPYTLPVAAL-----L--QASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVF 158 (373)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHhh-----c--CCCeEEEEcccchhccCCCCHHHHHHHHHHHHhCCEEE
Confidence 00 0111 134555666666655544333 1 225778888775432221 1 1233445666666
Q ss_pred ccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHH
Q 011954 208 IDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDL 287 (474)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ 287 (474)
+.|....+.+.. ++ .++.+|+||+|.+.|.+...... ..+.. ...++++++|+|++.+.++++.
T Consensus 159 ~~S~~l~~~~~~-----~~---~~i~~i~ngvd~~~f~~~~~~~~------~~~~~--~~~~~~~i~y~G~l~~~~d~~l 222 (373)
T cd04950 159 TTSPSLYEAKRR-----LN---PNVVLVPNGVDYEHFAAARDPPP------PPADL--AALPRPVIGYYGAIAEWLDLEL 222 (373)
T ss_pred ECCHHHHHHHhh-----CC---CCEEEcccccCHHHhhcccccCC------ChhHH--hcCCCCEEEEEeccccccCHHH
Confidence 666555544332 23 68999999999998875432110 00111 1245689999999999888776
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCC
Q 011954 288 FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~ 365 (474)
+.++++ ..|+++|+|+|++... ..... +...+||+|+|++ +++..+|+.+|++++|+.
T Consensus 223 l~~la~-----------~~p~~~~vliG~~~~~-----~~~~~----~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~ 282 (373)
T cd04950 223 LEALAK-----------ARPDWSFVLIGPVDVS-----IDPSA----LLRLPNVHYLGPKPYKELPAYLAGFDVAILPFR 282 (373)
T ss_pred HHHHHH-----------HCCCCEEEEECCCcCc-----cChhH----hccCCCEEEeCCCCHHHHHHHHHhCCEEecCCc
Confidence 655443 2389999999997211 11111 1113689999976 889999999999999986
Q ss_pred C---CCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 011954 366 A---RGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVK 442 (474)
Q Consensus 366 ~---~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 442 (474)
. ..+++|++++||||||+|||+|+.+++.+ ....+++. .+| +++++++|.+++.++..... +.+++ +.
T Consensus 283 ~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~---~~~~~~~~-~~d--~~~~~~ai~~~l~~~~~~~~--~~~~~-~~ 353 (373)
T cd04950 283 LNELTRATSPLKLFEYLAAGKPVVATPLPEVRR---YEDEVVLI-ADD--PEEFVAAIEKALLEDGPARE--RRRLR-LA 353 (373)
T ss_pred cchhhhcCCcchHHHHhccCCCEEecCcHHHHh---hcCcEEEe-CCC--HHHHHHHHHHHHhcCCchHH--HHHHH-HH
Confidence 2 13478999999999999999998765544 33334444 456 99999999997653321111 12222 45
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 011954 443 DRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~ 460 (474)
+.|||+..++++++.+.+
T Consensus 354 ~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 354 AQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHCCHHHHHHHHHHHHHh
Confidence 669999999999966544
No 83
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=8.3e-22 Score=174.09 Aligned_cols=355 Identities=17% Similarity=0.191 Sum_probs=235.7
Q ss_pred cCEEEEEecCCCC-CChhHHHHHHHHHHHhcCc--EEEEEeCCCCCCchhh----hhhcccchhccceeeeehhcH----
Q 011954 74 SKLVLLVSHELSL-SGGPLLLMELAFLLRGVGA--EVVWITNQKPNEPDEV----IYSLEHKMLDRGVQVLSAKGE---- 142 (474)
Q Consensus 74 ~~kIl~v~~~~~~-gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---- 142 (474)
.+.|.|++|+-+. ||||+++..-.+.+++.-- ...|.+.+.+...... ...+.-.+...++.++..+..
T Consensus 43 ~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVe 122 (465)
T KOG1387|consen 43 VKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVE 122 (465)
T ss_pred ceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeee
Confidence 4569999999777 5668999999999887543 3334443323222222 222233344445555433210
Q ss_pred --------------------HHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccc--ccch-------
Q 011954 143 --------------------KAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRG--HYFK------- 193 (474)
Q Consensus 143 --------------------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~--~~~~------- 193 (474)
...+-+..|||.+-.-..+..+ .+++. + ...|++.++|-... ..++
T Consensus 123 a~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~--p~~r~-l--~~~~V~aYvHYP~iS~DML~~l~qrq~ 197 (465)
T KOG1387|consen 123 ASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSY--PIFRR-L--RRIPVVAYVHYPTISTDMLKKLFQRQK 197 (465)
T ss_pred cccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchh--HHHHH-H--ccCceEEEEecccccHHHHHHHHhhhh
Confidence 0112237899887654333221 12221 1 13578888884211 0000
Q ss_pred --------hhhhhcc--------cccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhH
Q 011954 194 --------LEYVKHL--------PFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLR 257 (474)
Q Consensus 194 --------~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~ 257 (474)
..+++.+ ..++..++++..+.+. +....+. .++.+|+++.+++..+.
T Consensus 198 s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nH----I~qiW~~--~~~~iVyPPC~~e~lks----------- 260 (465)
T KOG1387|consen 198 SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNH----IKQIWQS--NTCSIVYPPCSTEDLKS----------- 260 (465)
T ss_pred cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHH----HHHHhhc--cceeEEcCCCCHHHHHH-----------
Confidence 1111111 2233344444444333 3333443 56889999998874332
Q ss_pred HHHHHhcCC-CCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCC-CcCchHHHHHHHHHHHc
Q 011954 258 EHVRESLGV-RDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDM-NAQTKFETELRNFVAEK 335 (474)
Q Consensus 258 ~~~r~~~~~-~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~-~~~~~~~~~l~~~~~~~ 335 (474)
..+- ..+...++++|.+.|.|++. +++.++-...+.+... ..++++|+++|+-- +++.+.-+.++++++++
T Consensus 261 -----~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a-~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L 333 (465)
T KOG1387|consen 261 -----KFGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEA-SVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL 333 (465)
T ss_pred -----HhcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhh-ccCCceEEEEeccCChhhHHHHHHHHHHHHhc
Confidence 2222 24568899999999999999 5554443333221110 33679999999843 33445677899999999
Q ss_pred CCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc-ceeeee---CCceeeecCC
Q 011954 336 KIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT-MEIVVN---GTTGLLHPTG 409 (474)
Q Consensus 336 ~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~-~e~v~~---~~~G~l~~~~ 409 (474)
+++++|.|.-+. +++..+|+.|.+-|+.-. .|.||+.+.|+||+|+-+|+.+.||. -++|.+ ..+|++.+.
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t- 410 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPT- 410 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCC-
Confidence 999999998864 899999999999999987 89999999999999999999998887 788764 248999964
Q ss_pred CCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 410 KEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 410 d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
.++.+++|.+++. |++.+..|+++||..+.+ |+..++.+.+...+.+++.+
T Consensus 411 ---~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~R-FsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 411 ---DEEYAEAILKIVKLNYDERNMMRRNARKSLAR-FGELKFDKDWENPICKLLEE 462 (465)
T ss_pred ---hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-hhHHHHHHhHhHHHHHhhcc
Confidence 6899999999998 888899999999987755 99999999999999998865
No 84
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.89 E-value=7.4e-21 Score=185.46 Aligned_cols=339 Identities=16% Similarity=0.105 Sum_probs=202.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceee--------------eeh
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQV--------------LSA 139 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 139 (474)
+|||+++.... ||-.+...++++|++.++++.++........... +...+....+.+ ...
T Consensus 1 ~~ki~i~~Ggt---~G~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 74 (380)
T PRK00025 1 PLRIAIVAGEV---SGDLLGAGLIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIR 74 (380)
T ss_pred CceEEEEecCc---CHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHH
Confidence 46888877422 3334544599999998888888874322110000 000000011111 111
Q ss_pred hcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHH
Q 011954 140 KGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKN 219 (474)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (474)
...+.+.+..+||+||++.. .+.+...+..... ...|++.+.+.....+......+..+..+.+++.+....+.+.
T Consensus 75 ~~~~~~l~~~kPdivi~~~~-~~~~~~~a~~a~~--~~ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~- 150 (380)
T PRK00025 75 RRLKRRLLAEPPDVFIGIDA-PDFNLRLEKKLRK--AGIPTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFYD- 150 (380)
T ss_pred HHHHHHHHHcCCCEEEEeCC-CCCCHHHHHHHHH--CCCCEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHHH-
Confidence 23445666789999999863 2222111111111 1246665544321111112222334455666666666555543
Q ss_pred hHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEE-EEec-ccccC-cchHHHHHHHHHHH
Q 011954 220 RTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLF-AIIN-SVSRG-KGQDLFLHSFYESL 296 (474)
Q Consensus 220 ~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~vg-rl~~~-Kg~~~ll~a~~~l~ 296 (474)
.+|. ++.++.|++....... . .+..++++++++++.+++ ++.| |.... ++++.+++++..+.
T Consensus 151 ----~~g~---~~~~~G~p~~~~~~~~-~-------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~ 215 (380)
T PRK00025 151 ----KLGV---PVTFVGHPLADAIPLL-P-------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQ 215 (380)
T ss_pred ----hcCC---CeEEECcCHHHhcccc-c-------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 2343 2556666553322111 1 134577889987776554 4445 33333 45788899998876
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc-CCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+ ++++++++++|+++ +..+++++.++++ ++. +.+.. .++..+|+.||++|.+| |.+.
T Consensus 216 ~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~~ 273 (380)
T PRK00025 216 Q-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTVT 273 (380)
T ss_pred H-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHHH
Confidence 5 34789999998632 2567788887776 553 55543 58999999999999976 6788
Q ss_pred HHHHhcCCCEEEc-----------------CCCCcceeeeeCC--ceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 011954 376 IEAMAFQLPVLGT-----------------AAGGTMEIVVNGT--TGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKK 436 (474)
Q Consensus 376 ~EAma~G~PvI~s-----------------~~~g~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (474)
+|||++|+|+|++ +.+++++++.++. .+++.+..| ++++++++.++++|++.+++|+++
T Consensus 274 lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~ 351 (380)
T PRK00025 274 LELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKLARALLPLLADGARRQALLEG 351 (380)
T ss_pred HHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8999999999987 4566677776653 456667777 999999999999999999999998
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 437 GYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 437 ~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+.+..... ....++++.+.+.+++.
T Consensus 352 ~~~~~~~~--~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 352 FTELHQQL--RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHhh
Confidence 76554442 22244555555554443
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.89 E-value=1.4e-20 Score=182.89 Aligned_cols=211 Identities=14% Similarity=0.116 Sum_probs=167.3
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC---
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP--- 307 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--- 307 (474)
++.++|.|||++.|.............+++|++++ ++.+|++++|+++.||++..++||.++++ ++|
T Consensus 249 ~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~-------~~Pe~~ 318 (487)
T TIGR02398 249 KLGAHPVGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLE-------RRPELL 318 (487)
T ss_pred EEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHH-------hCcccc
Confidence 37999999999999765433222333567888886 57789999999999999999999999987 446
Q ss_pred -cEEEEEEcCCCCcCc----hHHHHHHHHHHHc-------CCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCch
Q 011954 308 -SMHAVVVGSDMNAQT----KFETELRNFVAEK-------KIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGR 373 (474)
Q Consensus 308 -~~~l~i~G~g~~~~~----~~~~~l~~~~~~~-------~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~ 373 (474)
++.|+++|.+..... ++..++++++.+. +..+-+.+.+.. +++..+|+.|||++.||. .||+++
T Consensus 319 gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNL 396 (487)
T TIGR02398 319 GKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNL 396 (487)
T ss_pred CceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCc
Confidence 479999987653322 2455666666554 455567777764 889999999999999999 999999
Q ss_pred HHHHHHhcCC----CEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHH
Q 011954 374 ITIEAMAFQL----PVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEH 448 (474)
Q Consensus 374 ~~~EAma~G~----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~ 448 (474)
+..|+++|+. |+|.|..+|..+.+ ..+++++|.| ++++|++|.+.++ ..+.+++.-+..++++.+ ++..
T Consensus 397 Va~Eyva~~~~~~GvLILSefaGaa~~l---~~AllVNP~d--~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~ 470 (487)
T TIGR02398 397 VAKEYVAAQGLLDGVLVLSEFAGAAVEL---KGALLTNPYD--PVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQ 470 (487)
T ss_pred chhhHHhhhcCCCCCEEEeccccchhhc---CCCEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHH
Confidence 9999999998 99999999998666 3589999999 9999999999999 455566656666777765 8988
Q ss_pred HHHHHHHHHHH
Q 011954 449 HMSQRIALVLR 459 (474)
Q Consensus 449 ~~~~~~~~~~~ 459 (474)
..++.+++-+.
T Consensus 471 ~W~~~fl~~l~ 481 (487)
T TIGR02398 471 RWADEFLAAVS 481 (487)
T ss_pred HHHHHHHHHhh
Confidence 88888775543
No 86
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=7.2e-20 Score=176.06 Aligned_cols=203 Identities=28% Similarity=0.453 Sum_probs=171.2
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCC--CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDD--DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS 308 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (474)
++.+++|+++.+.+... ...+..+ ...++++||+.+.||++.+++++..+.+ ..++
T Consensus 173 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~-------~~~~ 230 (381)
T COG0438 173 KIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKK-------RGPD 230 (381)
T ss_pred CceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhh-------hcCC
Confidence 78999999999977642 1122233 3789999999999999999999998865 2244
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC--ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL--TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
+.++++|.++.. ...+..++.+++..+++.|+|... ++..+++.+|++++||. .|++|++++|||++|+|||
T Consensus 231 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 231 IKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred eEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEE
Confidence 899999998621 356666888888888999999865 78888999999999998 6999999999999999999
Q ss_pred EcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 387 GTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+++.++..|++.++.+|+++++.+ .+++++++..++++++.++.+++.+++.+.+.|+|+.+++++.+++.....
T Consensus 305 ~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 305 ASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999999998777788777776 899999999999988888888887777777889999999999999988764
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.88 E-value=6.8e-21 Score=184.38 Aligned_cols=337 Identities=13% Similarity=0.075 Sum_probs=195.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCCCCCchhhhhhcccchhc-cceeee--e------------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQKPNEPDEVIYSLEHKMLD-RGVQVL--S------------ 138 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------------ 138 (474)
|||++++..-+-- ..+.-+.++|++. +.++.++...... .....+.+.+.- ..+.+. .
T Consensus 1 ~~i~~~~gtr~~~---~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 74 (365)
T TIGR00236 1 LKVSIVLGTRPEA---IKMAPLIRALKKYPEIDSYVIVTAQHR---EMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNM 74 (365)
T ss_pred CeEEEEEecCHHH---HHHHHHHHHHhhCCCCCEEEEEeCCCH---HHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHH
Confidence 5888888533221 3577888889875 5565555422111 111111111110 011110 0
Q ss_pred hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccc-c---chhhh-hhccc-ccccccccccc
Q 011954 139 AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGH-Y---FKLEY-VKHLP-FVAGAMIDSYT 212 (474)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~-~---~~~~~-~~~~~-~~~~~~~~s~~ 212 (474)
...+..+.+..+||+||+|......+........ ...|++..-++.... . +.... +..+. ..+..++.+..
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~---~~ipv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~ 151 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFY---LQIPVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQ 151 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH---hCCCEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHH
Confidence 1234556677999999999754332222222211 123554332222111 0 11111 11111 22334444443
Q ss_pred cHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc-cCcchHHHHHH
Q 011954 213 TAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS-RGKGQDLFLHS 291 (474)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~-~~Kg~~~ll~a 291 (474)
.++.+. +.|++++++.+++||+....+...... ....++++++. ++.++++..+|.. ..||++.+++|
T Consensus 152 ----~~~~l~-~~G~~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a 220 (365)
T TIGR00236 152 ----AKDNLL-RENVKADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKA 220 (365)
T ss_pred ----HHHHHH-HcCCCcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHH
Confidence 344443 358888999999999733322211100 12445666763 3345554444542 46899999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGE 369 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E 369 (474)
+.++.+ ++++++++++|.+.. ..... +.+.++..++|+|+|+. .++..+|+.||+++.+|
T Consensus 221 ~~~l~~-------~~~~~~~vi~~~~~~---~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S----- 282 (365)
T TIGR00236 221 IREIVE-------EFEDVQIVYPVHLNP---VVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS----- 282 (365)
T ss_pred HHHHHH-------HCCCCEEEEECCCCh---HHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----
Confidence 998865 347889988865421 12222 33445566789999965 46778899999998776
Q ss_pred CCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 011954 370 CFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEH 448 (474)
Q Consensus 370 ~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 448 (474)
|..++|||+||+|||++ +.|+.+|++.++ .+++++ .| ++++++++.++++|++.+++|+++...+. +..+++
T Consensus 283 --g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~~~~~g-~~~a~~ 355 (365)
T TIGR00236 283 --GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNASNPYG-DGEASE 355 (365)
T ss_pred --hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhcCCCCc-CchHHH
Confidence 34579999999999996 678888888755 566664 45 89999999999999999998887653322 234555
Q ss_pred HHHHHHHH
Q 011954 449 HMSQRIAL 456 (474)
Q Consensus 449 ~~~~~~~~ 456 (474)
++++.+.+
T Consensus 356 ri~~~l~~ 363 (365)
T TIGR00236 356 RIVEELLN 363 (365)
T ss_pred HHHHHHHh
Confidence 55555544
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.86 E-value=4.7e-20 Score=178.76 Aligned_cols=315 Identities=17% Similarity=0.118 Sum_probs=190.4
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCC--CCCchhhhhhcccchhccceee--ee------------
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQK--PNEPDEVIYSLEHKMLDRGVQV--LS------------ 138 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~------------ 138 (474)
||++++..-+-- ..+.-+.++|++. |+++.++.... .........+.. ......+.. ..
T Consensus 1 ~i~~~~gtr~~~---~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 76 (363)
T cd03786 1 KILVVTGTRPEY---IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEIL-FIIKPDYDLLLGSDSQSLGAQTAGL 76 (363)
T ss_pred CEEEEEecCHHH---HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhh-CCCCCCEEEecCCCCCCHHHHHHHH
Confidence 477777532211 3577788889886 89999766421 111111111000 000111111 00
Q ss_pred hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccc---cchhhhhh-cccccccccccccccH
Q 011954 139 AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGH---YFKLEYVK-HLPFVAGAMIDSYTTA 214 (474)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~---~~~~~~~~-~~~~~~~~~~~s~~~~ 214 (474)
...........+||+||+|......+........ ...|++...|+.... ......+. ..+..+.+++.+....
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~---~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~ 153 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFK---LGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEAR 153 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---cCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHH
Confidence 1123344556799999999644332222222211 134666544433221 10111111 1223344444444443
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCC-CccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccccc---CcchHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGN-SKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSR---GKGQDLFLH 290 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~---~Kg~~~ll~ 290 (474)
++ +. ++|++.+++.+++|++ |...+...... ....++.++++++++++++.||... .||++.+++
T Consensus 154 ~~----l~-~~G~~~~kI~vign~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~ 222 (363)
T cd03786 154 RN----LL-QEGEPPERIFVVGNTMIDALLRLLELAK------KELILELLGLLPKKYILVTLHRVENVDDGEQLEEILE 222 (363)
T ss_pred HH----HH-HcCCCcccEEEECchHHHHHHHHHHhhc------cchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHH
Confidence 33 32 4688999999999996 43322211110 1223456788777788888999875 799999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCC-CCeEEEecC--CCChHHHHhcCCEEEEcCCCC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKI-QDHVHFVNK--TLTVSPYLASIDVLVQNSQAR 367 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~ 367 (474)
++.++.+ .++.+++.|+++ ....+++.+.++++ .++|+|+|. .+++..+|+.||++|.+|
T Consensus 223 al~~l~~---------~~~~vi~~~~~~-----~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S--- 285 (363)
T cd03786 223 ALAELAE---------EDVPVVFPNHPR-----TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS--- 285 (363)
T ss_pred HHHHHHh---------cCCEEEEECCCC-----hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC---
Confidence 9988743 357777777664 67788888888876 678999975 478999999999999988
Q ss_pred CCCCchHHHHHHhcCCCEEEcCC-CCcceeeeeCCceeeecCC-CCChHHHHHHHHHHhhCHHHHHHHH
Q 011954 368 GECFGRITIEAMAFQLPVLGTAA-GGTMEIVVNGTTGLLHPTG-KEGVTPLANNIVKLATHVERRLTMG 434 (474)
Q Consensus 368 ~E~~~~~~~EAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~~~~~~~~~ 434 (474)
. | ++.|||++|+|+|+++. +..+|.+.+ |..+..+ | +++++++|..++++++.+..|.
T Consensus 286 g---g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~---g~~~~~~~~--~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 286 G---G-IQEEASFLGVPVLNLRDRTERPETVES---GTNVLVGTD--PEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred c---c-HHhhhhhcCCCEEeeCCCCccchhhhe---eeEEecCCC--HHHHHHHHHHHhcCchhhhcCC
Confidence 2 3 47899999999999974 445666644 3333333 4 8999999999999988777763
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.86 E-value=7.6e-20 Score=174.10 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=186.7
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCC-CEEEEcccchhh-H
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNA-DLVVLNTAVAGK-W 164 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-DiV~~~~~~~~~-~ 164 (474)
.|+...-.++.+.+.+.|+++.-+......... +.. .......+....++ |+||.+++.... .
T Consensus 15 ~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~Dvv~~~~P~~~~~~ 79 (333)
T PRK09814 15 SAALKAKNDVTKIAKQLGFEELGIYFYNIKRDS-----LSE----------RSKRLDGILASLKPGDIVIFQFPTWNGFE 79 (333)
T ss_pred chHHHHHHHHHHHHHHCCCeEeEEEecccccch-----HHH----------HHHHHHHHHhcCCCCCEEEEECCCCchHH
Confidence 566688888899999999988766532211000 000 00012223444566 999999875432 1
Q ss_pred HhHHhhhcccccccceeeeeeccccccch------hhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCC
Q 011954 165 LDGVLKDKVSQVLPKVLWWIHEMRGHYFK------LEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLG 238 (474)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ng 238 (474)
+...+...+.+...+++.++|+....... ......++.++.+++.+..+.+++. ..|++..++.++++.
T Consensus 80 ~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~-----~~g~~~~~i~~~~~~ 154 (333)
T PRK09814 80 FDRLFVDKLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKDRLV-----EEGLTTDKIIVQGIF 154 (333)
T ss_pred HHHHHHHHHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcCceEecccc
Confidence 22222112222357899999997643321 1223445667777777777766654 347766778777766
Q ss_pred CCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCC
Q 011954 239 NSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDM 318 (474)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~ 318 (474)
.+.....+. . .+...+.|+|+|++...++ + + + ..++++|+|+|+|+
T Consensus 155 ~~~~~~~~~--------------~---~~~~~~~i~yaG~l~k~~~---l-~------~-------~~~~~~l~i~G~g~ 200 (333)
T PRK09814 155 DYLNDIELV--------------K---TPSFQKKINFAGNLEKSPF---L-K------N-------WSQGIKLTVFGPNP 200 (333)
T ss_pred ccccccccc--------------c---cccCCceEEEecChhhchH---H-H------h-------cCCCCeEEEECCCc
Confidence 543211110 0 1134568999999984321 1 1 0 12679999999996
Q ss_pred CcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC---------CCCCCchHHHHHHhcCCCEEE
Q 011954 319 NAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA---------RGECFGRITIEAMAFQLPVLG 387 (474)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~---------~~E~~~~~~~EAma~G~PvI~ 387 (474)
. .. ...++|+|+|+. +++..+|+. |+.+.+... ..-++|.++.|+||||+|||+
T Consensus 201 ~-----~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~ 265 (333)
T PRK09814 201 E-----DL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV 265 (333)
T ss_pred c-----cc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE
Confidence 2 11 234789999975 788889988 665544320 013578899999999999999
Q ss_pred cCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011954 388 TAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMS 451 (474)
Q Consensus 388 s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~ 451 (474)
++.+++.|+|+++.+|++++ + .++++++|..+ +++.+++|++++++.+.. +.--.+.
T Consensus 266 ~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~--~~~~~~~m~~n~~~~~~~-~~~g~~~ 322 (333)
T PRK09814 266 WSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI--TEEEYQEMVENVKKISKL-LRNGYFT 322 (333)
T ss_pred CCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--CHHHHHHHHHHHHHHHHH-HhcchhH
Confidence 99999999999999999998 4 78999999886 457789999999987755 4433333
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.82 E-value=2.5e-18 Score=177.58 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=195.6
Q ss_pred CCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-------hhhhhcccccccccccccccHHHHHHhHH
Q 011954 150 NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-------LEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
.-|+|.+|+.... .+..+++...+. .++.+..|...+.... ..+.+.+-.++-+-..+....+.+.....
T Consensus 231 ~gD~VWVHDYHL~-LlP~~LR~~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~ 307 (934)
T PLN03064 231 EGDVVWCHDYHLM-FLPKCLKEYNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACT 307 (934)
T ss_pred CCCEEEEecchhh-HHHHHHHHhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 3479999985543 344455555443 4677777764332211 11222222223222233333333333333
Q ss_pred HHhcCC-----------CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHH
Q 011954 223 ERLGIR-----------MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHS 291 (474)
Q Consensus 223 ~~~~~~-----------~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a 291 (474)
+.+|.. .-++.+.|-|||.+.|.............++++++++ ++.+|+.++|+++.||+...++|
T Consensus 308 rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 308 RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred HHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHH
Confidence 333321 1236788999999999765433222233467888774 56789999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcE----EEEEEcCCCCcCchHHHH----HHHHHHHcC----CCC--eEEEecC---CCChHHHH
Q 011954 292 FYESLQLIREKKLQVPSM----HAVVVGSDMNAQTKFETE----LRNFVAEKK----IQD--HVHFVNK---TLTVSPYL 354 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~----~l~i~G~g~~~~~~~~~~----l~~~~~~~~----l~~--~v~~~g~---~~~~~~~~ 354 (474)
|.++++ ++|++ .|+-+......+.+..++ +.+++.+.+ -.+ -|+++.. .+++..+|
T Consensus 385 fE~fL~-------~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY 457 (934)
T PLN03064 385 FEKFLE-------ENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALY 457 (934)
T ss_pred HHHHHH-------hCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHH
Confidence 999877 44554 344333222111113333 444443322 111 2444442 38899999
Q ss_pred hcCCEEEEcCCCCCCCCchHHHHHHhcCC----CEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHH
Q 011954 355 ASIDVLVQNSQARGECFGRITIEAMAFQL----PVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVER 429 (474)
Q Consensus 355 ~~adv~v~ps~~~~E~~~~~~~EAma~G~----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (474)
+.|||+|+||. .||++++..|||+|+. ++|.|...|..+.+ +..+++++|.| ++++|++|.+.++ +++.
T Consensus 458 ~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D--~~~vA~AI~~AL~M~~~E 531 (934)
T PLN03064 458 AVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWN--ITEVAASIAQALNMPEEE 531 (934)
T ss_pred HhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCC--HHHHHHHHHHHHhCCHHH
Confidence 99999999999 9999999999999955 55559988888777 55799999999 9999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 430 RLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
++++.++.++++.+ +++...++.+++-+.+...
T Consensus 532 r~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 532 REKRHRHNFMHVTT-HTAQEWAETFVSELNDTVV 564 (934)
T ss_pred HHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHHh
Confidence 99999999999877 9999999998887777654
No 91
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.81 E-value=1.2e-17 Score=167.29 Aligned_cols=186 Identities=14% Similarity=0.164 Sum_probs=147.6
Q ss_pred CCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc---hHHHHHHHHHHHcCCCCeEE
Q 011954 266 VRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT---KFETELRNFVAEKKIQDHVH 342 (474)
Q Consensus 266 ~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~---~~~~~l~~~~~~~~l~~~v~ 342 (474)
++++.+++++++|+..+||+++++.++.++.+.+.+ ...+++|++.|.+.+.+. ++.+.+.+++++....++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~---~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNN---PERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhC---CCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 456778999999999999999999999988654322 114699999999865432 25666677776644567888
Q ss_pred Eec-CCCCh-HHHHhcCCEEEE-cCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecC-----------
Q 011954 343 FVN-KTLTV-SPYLASIDVLVQ-NSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPT----------- 408 (474)
Q Consensus 343 ~~g-~~~~~-~~~~~~adv~v~-ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~----------- 408 (474)
|+- +...+ ..+++.||++++ ||+. .|++|++-+-||..|.+.+++--|...|.. ++.||+.+.+
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d 539 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQD 539 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcccccccccc
Confidence 876 44444 457899999999 9985 899999999999999999999988888876 6789999984
Q ss_pred -CCCChHHHHHHHHHHh-----hC-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 409 -GKEGVTPLANNIVKLA-----TH-----VERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 409 -~d~~~~~la~~i~~ll-----~~-----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
.| +++|.++|++.+ ++ |..+.+|.+++.+.....|||++++++|.+.|
T Consensus 540 ~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 540 RLD--AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred CCC--HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 44 899999997655 22 55688888888877666899999999999987
No 92
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-16 Score=138.54 Aligned_cols=340 Identities=15% Similarity=0.136 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh------------------------cHHHHh
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------------------GEKAIN 146 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ 146 (474)
-.+..-|..|++.|++|.++....+....+. +....+.+.... ..+.+.
T Consensus 27 PRMqYHA~Sla~~gf~VdliGy~~s~p~e~l-------~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~ 99 (444)
T KOG2941|consen 27 PRMQYHALSLAKLGFQVDLIGYVESIPLEEL-------LNHPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLWALF 99 (444)
T ss_pred hHHHHHHHHHHHcCCeEEEEEecCCCChHHH-------hcCCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHHHHH
Confidence 3466677889999999999985544322222 222222222111 123334
Q ss_pred hhcCCCEEEEcccchhhHHhHHhhh-cccccccceeeeeeccccccchhh-----------hhhccc-cccccccccccc
Q 011954 147 TALNADLVVLNTAVAGKWLDGVLKD-KVSQVLPKVLWWIHEMRGHYFKLE-----------YVKHLP-FVAGAMIDSYTT 213 (474)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~h~~~~~~~~~~-----------~~~~~~-~~~~~~~~s~~~ 213 (474)
....+|++...++..-..+..+... .+ .+.+++...|++... .... ..+.+. ...+....+.++
T Consensus 100 ~~~~~~~ilvQNPP~iPtliv~~~~~~l--~~~KfiIDWHNy~Ys-l~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcV 176 (444)
T KOG2941|consen 100 VLRPPDIILVQNPPSIPTLIVCVLYSIL--TGAKFIIDWHNYGYS-LQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCV 176 (444)
T ss_pred hccCCcEEEEeCCCCCchHHHHHHHHHH--hcceEEEEehhhHHH-HHHHhhcCCCCchHHHHHHHHHHhhcccccchhh
Confidence 4589999999886443322222111 11 246888889986322 1111 111111 112222333455
Q ss_pred HHHHHHhHHHHhcCCCCCeEEEeCCCC-----c----cccchhhh---------hHHHHHhHHHHHHhcC------CCCC
Q 011954 214 AEYWKNRTRERLGIRMPETYVVHLGNS-----K----DLMDIAED---------SVARRVLREHVRESLG------VRDD 269 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~ki~vi~ngvd-----~----~~~~~~~~---------~~~~~~~~~~~r~~~~------~~~~ 269 (474)
.+.+++.+.+++|+. +..|+|.--. . +.|.+... ...+..++..+-++.. .++.
T Consensus 177 T~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~ 254 (444)
T KOG2941|consen 177 TKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPER 254 (444)
T ss_pred HHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCC
Confidence 556666777788875 4556654322 1 11222211 0001111112222221 3445
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-C--
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-K-- 346 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~-- 346 (474)
+.+++.....++..++..|++|+...-+++.+.+...|.+-.+|.|.|| ..+.+.+.++++++. +|.+.- +
T Consensus 255 pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP-----lkE~Y~~~I~~~~~~-~v~~~tpWL~ 328 (444)
T KOG2941|consen 255 PALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP-----LKEKYSQEIHEKNLQ-HVQVCTPWLE 328 (444)
T ss_pred CeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc-----hhHHHHHHHHHhccc-ceeeeecccc
Confidence 5677788889999999999999986655555555567899999999998 899999999999885 455443 3
Q ss_pred CCChHHHHhcCCEE--EEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 347 TLTVSPYLASIDVL--VQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 347 ~~~~~~~~~~adv~--v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
.+|.+.+++.||+. +.+|.+ +=..|++++....||+||++-+...+.|+|++++||++|.+ .++|++.+..+.
T Consensus 329 aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~D----s~eLa~ql~~lf 403 (444)
T KOG2941|consen 329 AEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFED----SEELAEQLQMLF 403 (444)
T ss_pred cccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEecc----HHHHHHHHHHHH
Confidence 48999999999974 456653 56689999999999999999999999999999999999975 799999999999
Q ss_pred h----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011954 425 T----HVERRLTMGKKGYERVKDRFLEHHMSQRIA 455 (474)
Q Consensus 425 ~----~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 455 (474)
+ +.+...++.++.++. +...|+...++..
T Consensus 404 ~~fp~~a~~l~~lkkn~~e~--~e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 404 KNFPDNADELNQLKKNLREE--QELRWDESWERTA 436 (444)
T ss_pred hcCCCCHHHHHHHHHhhHHH--HhhhHHHHHHHhh
Confidence 8 888999999999887 3356665554433
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.79 E-value=1.7e-17 Score=164.40 Aligned_cols=218 Identities=9% Similarity=0.106 Sum_probs=169.9
Q ss_pred cccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEec-
Q 011954 199 HLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIIN- 277 (474)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vg- 277 (474)
.+..++.+++.+....+.+...+... . ...++..||.+.- ... +.... ..+..+++++
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~-~-~~~~v~~Ip~~~~-~~~-~~~s~-----------------r~~~~~I~v~i 327 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYREN-Y-VEFDISRITPFDT-RLR-LGQSQ-----------------QLYETEIGFWI 327 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhc-c-cCCcceeeCccce-EEe-cChhh-----------------cccceEEEEEc
Confidence 44555666665555555454443221 0 1245677886554 222 11100 2233566777
Q ss_pred -ccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC------------------
Q 011954 278 -SVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ------------------ 338 (474)
Q Consensus 278 -rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~------------------ 338 (474)
|+ +.|.++.+|+++.++.+ ++|+++|.+.|.+.. .+....++++++++++.
T Consensus 328 drL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 328 DGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNND--NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred CCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCc--hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 99 99999999999999877 569999999998742 12457777787777666
Q ss_pred -----------CeEEEecCCC--ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceee
Q 011954 339 -----------DHVHFVNKTL--TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLL 405 (474)
Q Consensus 339 -----------~~v~~~g~~~--~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l 405 (474)
+.|.|.|++. ++.+.|..+.++|.+|. .|||+ +.+||++.|+|+| .-|..++|.++.||++
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~l 471 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYI 471 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEE
Confidence 7999999886 99999999999999999 99999 9999999999999 4566999999999999
Q ss_pred ecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 406 HPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
+ +| .++|+++|..++.+++.++++...+++.+.+ ||.+.+.++|.+++
T Consensus 472 i--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 472 I--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred e--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 9 55 9999999999999999999999999999866 99999999998753
No 94
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.77 E-value=9.3e-19 Score=144.15 Aligned_cols=133 Identities=23% Similarity=0.322 Sum_probs=98.1
Q ss_pred CEEEEEecccccCcchHHHHH-HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC
Q 011954 270 DLLFAIINSVSRGKGQDLFLH-SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL 348 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~-a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (474)
-++|+++|++.+.|+++.+++ ++.++.+ +.|+++|+|+|.++ . +++++ ..++|+|+|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~-----~--~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGP-----D--ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCH-----H--HHHHh-----cCCCEEEcCCHH
Confidence 368899999999999999999 9988876 45899999999976 2 24444 125899999988
Q ss_pred ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 349 TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 349 ~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
++.++++.||+++.|+.. .+++|.+++|||++|+|||+++. +..+++.....|.++ .++ +++++++|.++++|
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCC--HHHHHHHHHHHhcC
Confidence 999999999999999863 67999999999999999999998 566666656677777 666 99999999999875
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=3.2e-16 Score=151.69 Aligned_cols=323 Identities=19% Similarity=0.134 Sum_probs=186.3
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh---hhhcccchhccce-ee--------eehhcH
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV---IYSLEHKMLDRGV-QV--------LSAKGE 142 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~~~~~~~~~-~~--------~~~~~~ 142 (474)
.||++.... .||..+--.++++|++.|+++.++...++...... ...+ ..+...|+ .. ......
T Consensus 6 ~ki~i~aGg---tsGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~-~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 6 PTIALVAGE---ASGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSM-EELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CeEEEEeCC---ccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccCh-HHhhhccHHHHHHHHHHHHHHHHHH
Confidence 356665532 23346655999999999999999885432110000 0000 00111111 00 011133
Q ss_pred HHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeee-ccccccchhhhhhcccccccccccccccHHHHHHhH
Q 011954 143 KAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIH-EMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
.++.+..+||+|++++. ++.-+........ ...|+++++. +.+. +.....+...+.++.+++.+....+++.+
T Consensus 82 ~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~--~gip~v~~i~P~~wa-w~~~~~r~l~~~~d~v~~~~~~e~~~~~~-- 155 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDA-PDFNLTKELKKKD--PGIKIIYYISPQVWA-WRKWRAKKIEKATDFLLAILPFEKAFYQK-- 155 (385)
T ss_pred HHHHHhcCCCEEEEeCC-CCccHHHHHHHhh--CCCCEEEEeCCcHhh-cCcchHHHHHHHHhHhhccCCCcHHHHHh--
Confidence 45566789999999985 3322111111111 2346665432 1111 11112223335666677777666655442
Q ss_pred HHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEe-c-cccc-CcchHHHHHHHHHHHHH
Q 011954 222 RERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAII-N-SVSR-GKGQDLFLHSFYESLQL 298 (474)
Q Consensus 222 ~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v-g-rl~~-~Kg~~~ll~a~~~l~~~ 298 (474)
.+ .+..++.|++-.+.....+. +.+.|++++++++.++|++. | |..+ .|+++.+++++..+.+
T Consensus 156 ---~g---~~~~~vGnPv~~~~~~~~~~-------~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~- 221 (385)
T TIGR00215 156 ---KN---VPCRFVGHPLLDAIPLYKPD-------RKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ- 221 (385)
T ss_pred ---cC---CCEEEECCchhhhccccCCC-------HHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH-
Confidence 22 35677888874332211011 34567889998777666554 3 6655 6899999999988865
Q ss_pred HHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHH
Q 011954 299 IREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEA 378 (474)
Q Consensus 299 ~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EA 378 (474)
++|++++++.+.+. .....+++..+.++....|.+.+. ++..+|+.||++|.+| |.+.+||
T Consensus 222 ------~~p~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlEa 282 (385)
T TIGR00215 222 ------QEPDLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-------GTAALEA 282 (385)
T ss_pred ------hCCCeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-------CHHHHHH
Confidence 44788887654332 145566777777766556766654 6788999999999988 5567799
Q ss_pred HhcCCCEEEcC-CC----------------CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH----HHHHHHHHHH
Q 011954 379 MAFQLPVLGTA-AG----------------GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV----ERRLTMGKKG 437 (474)
Q Consensus 379 ma~G~PvI~s~-~~----------------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~----~~~~~~~~~~ 437 (474)
|++|+|+|... ++ +.+.++.+......+-.++-+++.+++.+.++++|+ +.++++.+.-
T Consensus 283 ~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 283 ALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF 362 (385)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 99999988872 11 122223222221222222223899999999999999 8888876655
Q ss_pred HHH
Q 011954 438 YER 440 (474)
Q Consensus 438 ~~~ 440 (474)
.+.
T Consensus 363 ~~~ 365 (385)
T TIGR00215 363 EEL 365 (385)
T ss_pred HHH
Confidence 543
No 96
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.69 E-value=6e-15 Score=150.61 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=148.9
Q ss_pred CCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCch---HHHHHHHHHHHcCCCCeEE
Q 011954 266 VRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTK---FETELRNFVAEKKIQDHVH 342 (474)
Q Consensus 266 ~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~---~~~~l~~~~~~~~l~~~v~ 342 (474)
++++.++|+++.|+..+|+.++++..+.++.+.+.+. ..+++|+++|.+.+.+.. ..+.+.+++++....++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 4566789999999999999999999999887654331 146999999998655432 3345555555445567888
Q ss_pred EecC-CCCh-HHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCC----------
Q 011954 343 FVNK-TLTV-SPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGK---------- 410 (474)
Q Consensus 343 ~~g~-~~~~-~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d---------- 410 (474)
|+.. ...+ ..+++.||++++||+...|.+|++-+-||..|.+-+++--|...|.. ++.||+.+.++.
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~ 629 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDA 629 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcch
Confidence 8764 4444 45789999999999866899999999999999999999999998887 789999998832
Q ss_pred CChHHHHHHHHHHhh----C------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHH
Q 011954 411 EGVTPLANNIVKLAT----H------VERRLTMGKKGYERVKDRFLEHHMSQRIALV-LREV 461 (474)
Q Consensus 411 ~~~~~la~~i~~ll~----~------~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~-~~~~ 461 (474)
.|+++|.+.|++-+- + |..+.+|.+++.+.+...|||++|+++|.+- |..+
T Consensus 630 ~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 630 EEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHH
Confidence 137777777754332 2 6678899899988888899999999998764 4443
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.58 E-value=1.5e-12 Score=124.26 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=161.9
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhh-hhccc-chhcccee----e----------ee
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVI-YSLEH-KMLDRGVQ----V----------LS 138 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~-~~~~~~~~----~----------~~ 138 (474)
+||++.+. .-||--.=...++++|.+.||+|.+++...+.+..-.. +.+.. .+...++. + ..
T Consensus 2 ~~i~~~~G--GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (352)
T PRK12446 2 KKIVFTGG--GSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKG 79 (352)
T ss_pred CeEEEEcC--CcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHH
Confidence 45666552 11221233778899999999999999966543321100 00000 01000110 0 00
Q ss_pred hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHH
Q 011954 139 AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWK 218 (474)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (474)
......+.+..+||+||++....+.....+.. + ...|++ +|+..... ....+...++++.+........
T Consensus 80 ~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~--~--~~~p~~--i~e~n~~~-g~~nr~~~~~a~~v~~~f~~~~---- 148 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGW--L--NRVPVL--LHESDMTP-GLANKIALRFASKIFVTFEEAA---- 148 (352)
T ss_pred HHHHHHHHHhcCCCEEEecCchhhHHHHHHHH--H--cCCCEE--EECCCCCc-cHHHHHHHHhhCEEEEEccchh----
Confidence 11223456679999999987555422111111 1 113443 45543211 1112222233333332221111
Q ss_pred HhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHH
Q 011954 219 NRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQL 298 (474)
Q Consensus 219 ~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~ 298 (474)
.+++.+++.++.|++..+..... ++..++.+++++++++++.+|.=.-.+.+ -+++.++...
T Consensus 149 ------~~~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS~Ga~~i---n~~~~~~l~~ 210 (352)
T PRK12446 149 ------KHLPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGSLGAKKI---NETVREALPE 210 (352)
T ss_pred ------hhCCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCccchHHH---HHHHHHHHHh
Confidence 12345688899999877664322 23456678887777666666543223333 3333333222
Q ss_pred HHHhccCCCcEEEE-EEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC-CChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 299 IREKKLQVPSMHAV-VVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT-LTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 299 ~~~~~~~~~~~~l~-i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
+. .+++++ ++|... ..+.+.. . .++...++. +++.++|+.||++| .-+.+.++.
T Consensus 211 l~------~~~~vv~~~G~~~-----~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvI------sr~G~~t~~ 266 (352)
T PRK12446 211 LL------LKYQIVHLCGKGN-----LDDSLQN----K---EGYRQFEYVHGELPDILAITDFVI------SRAGSNAIF 266 (352)
T ss_pred hc------cCcEEEEEeCCch-----HHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEE------ECCChhHHH
Confidence 21 235655 455431 2222211 1 234556776 78999999999999 445688999
Q ss_pred HHHhcCCCEEEcCCCC-c--------ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 011954 377 EAMAFQLPVLGTAAGG-T--------MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRL 431 (474)
Q Consensus 377 EAma~G~PvI~s~~~g-~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 431 (474)
|++++|+|.|...... . .+.+.+...|..+...+-+++.+.+++.++++|++.++
T Consensus 267 E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 267 EFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 9999999999885431 1 12333445566665544348899999999998877654
No 98
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.58 E-value=1.1e-12 Score=128.24 Aligned_cols=296 Identities=15% Similarity=0.129 Sum_probs=172.4
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-------hhhhhhcccccccccccccccHHHHHHhH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-------KLEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
..-|+|.+|+.....+ ...++...+. .++.+..|...+... .....+.+-.+|.+-..+....+.+....
T Consensus 140 ~~~D~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLL-PQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTTH-HHHHHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHH-HHHHHhhcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 5678999998654433 3445554444 477777886432211 11222223333333334444444444444
Q ss_pred HHHhcCC-------------CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHH
Q 011954 222 RERLGIR-------------MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLF 288 (474)
Q Consensus 222 ~~~~~~~-------------~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~l 288 (474)
.+.+|.. .-++.+.|-|||++.+........-.....+++++++ .+..+|+.+.|++..||+..=
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 4444322 1237888999999988765433222333567788774 234788899999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCch----HHHHHHHHHHH----cCCCC--eEEEecC---CCChHHHHh
Q 011954 289 LHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTK----FETELRNFVAE----KKIQD--HVHFVNK---TLTVSPYLA 355 (474)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~----~~~~l~~~~~~----~~l~~--~v~~~g~---~~~~~~~~~ 355 (474)
+.||.++++..++. ..++.|+-++.......+ +..++.+++.+ +|-.+ -|.++.. .+++..+|+
T Consensus 295 l~Afe~fL~~~P~~---~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPEY---RGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GGG---TTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcCc---cCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 99999999876653 256888877764433332 34455555543 33222 2455542 378999999
Q ss_pred cCCEEEEcCCCCCCCCchHHHHHHhcCCC----EEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHH
Q 011954 356 SIDVLVQNSQARGECFGRITIEAMAFQLP----VLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERR 430 (474)
Q Consensus 356 ~adv~v~ps~~~~E~~~~~~~EAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (474)
.||+++.+|. .+|.-++..|+.+|..+ +|.|...|..+.+ ++..++++|.| ++++|++|.+.++ .++.+
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L--~~~al~VNP~d--~~~~A~ai~~AL~M~~~Er 445 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL--SEAALLVNPWD--IEEVADAIHEALTMPPEER 445 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT---TTS-EEE-TT---HHHHHHHHHHHHT--HHHH
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHc--CCccEEECCCC--hHHHHHHHHHHHcCCHHHH
Confidence 9999999999 99999999999999876 7888888888777 33459999999 9999999999999 66677
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 431 LTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 431 ~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
+..-+..++++.+ ++....++.+++-++
T Consensus 446 ~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 446 KERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 7777777887766 888888888876654
No 99
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=4.8e-12 Score=119.42 Aligned_cols=250 Identities=15% Similarity=0.113 Sum_probs=152.7
Q ss_pred HHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHH
Q 011954 143 KAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
+.+++..+||+|++.....+.....+... ...|++ +|+.. ......++...+.++.+.......
T Consensus 84 ~~il~~~kPd~vig~Ggyvs~P~~~Aa~~----~~iPv~--ihEqn-~~~G~ank~~~~~a~~V~~~f~~~--------- 147 (357)
T COG0707 84 RKILKKLKPDVVIGTGGYVSGPVGIAAKL----LGIPVI--IHEQN-AVPGLANKILSKFAKKVASAFPKL--------- 147 (357)
T ss_pred HHHHHHcCCCEEEecCCccccHHHHHHHh----CCCCEE--EEecC-CCcchhHHHhHHhhceeeeccccc---------
Confidence 45667799999999775443322221111 123554 55442 111222222222222222211110
Q ss_pred HHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHh
Q 011954 223 ERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREK 302 (474)
Q Consensus 223 ~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (474)
.-+.+..++.+..|++..+++. .+. ...+..... ++++|+++|. -.|...+-+++.++...+.
T Consensus 148 -~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~~--~~~~ilV~GG---S~Ga~~ln~~v~~~~~~l~-- 210 (357)
T COG0707 148 -EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGRL--DKKTILVTGG---SQGAKALNDLVPEALAKLA-- 210 (357)
T ss_pred -cccCCCCceEEecCcccHHhhc-cch--------hhhhhhccC--CCcEEEEECC---cchhHHHHHHHHHHHHHhh--
Confidence 1234556799999999888776 321 122222222 5666666653 2344445555555444332
Q ss_pred ccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcC
Q 011954 303 KLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382 (474)
Q Consensus 303 ~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G 382 (474)
.+++++...+.. ..+++++.-.+++. +.+.++.++|..+|+.||++| .-+.++++.|..++|
T Consensus 211 ----~~~~v~~~~G~~-----~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvI------sRaGa~Ti~E~~a~g 272 (357)
T COG0707 211 ----NRIQVIHQTGKN-----DLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVI------SRAGALTIAELLALG 272 (357)
T ss_pred ----hCeEEEEEcCcc-----hHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEE------eCCcccHHHHHHHhC
Confidence 246666554432 35556655555554 889999999999999999999 344679999999999
Q ss_pred CCEEEcCCCCc--------ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 383 LPVLGTAAGGT--------MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 383 ~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
+|+|.-..+.. ...+++...|.+++..+-.++.+.+.|.+++++++..++|.+++++....
T Consensus 273 ~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p 341 (357)
T COG0707 273 VPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKP 341 (357)
T ss_pred CCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99998765533 22344556777777665458899999999999999999999998875544
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.57 E-value=5.8e-13 Score=129.02 Aligned_cols=254 Identities=18% Similarity=0.166 Sum_probs=141.3
Q ss_pred cccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhH-----HHHHhHHHHHHhc----CCC-CCCEE
Q 011954 203 VAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSV-----ARRVLREHVRESL----GVR-DDDLL 272 (474)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~-----~~~~~~~~~r~~~----~~~-~~~~~ 272 (474)
++.+.++|..+....+. -++-.+ =.|+|||++.+.|....... .+....+-++..+ .++ ++.+.
T Consensus 222 AdvFTTVSeITa~Ea~~----LL~r~p--DvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl~ 295 (633)
T PF05693_consen 222 ADVFTTVSEITAKEAEH----LLKRKP--DVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTLY 295 (633)
T ss_dssp SSEEEESSHHHHHHHHH----HHSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGEEE
T ss_pred cCeeeehhhhHHHHHHH----HhCCCC--CEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccceEE
Confidence 34444555555444332 333232 36899999999876553211 1111112233332 223 45678
Q ss_pred EEEeccccc-CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc-----------------------------
Q 011954 273 FAIINSVSR-GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT----------------------------- 322 (474)
Q Consensus 273 i~~vgrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~----------------------------- 322 (474)
|...||.+. .||+|.+|+|+.+|-..++..+.+..=+-|+|+-.....-.
T Consensus 296 ~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~ 375 (633)
T PF05693_consen 296 FFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRLF 375 (633)
T ss_dssp EEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999985 89999999999999887776432112233444433221000
Q ss_pred ---------------------------------------------hHHHHHHHHHHHcCCC----C--eEEEecC-----
Q 011954 323 ---------------------------------------------KFETELRNFVAEKKIQ----D--HVHFVNK----- 346 (474)
Q Consensus 323 ---------------------------------------------~~~~~l~~~~~~~~l~----~--~v~~~g~----- 346 (474)
...+.+-..++++++. + .|+|++.
T Consensus 376 ~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~ 455 (633)
T PF05693_consen 376 ESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGT 455 (633)
T ss_dssp HHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---TT
T ss_pred HHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccCC
Confidence 0112222333334442 2 3566651
Q ss_pred ----CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeee-----eCCceeeecC-CCCC----
Q 011954 347 ----TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVV-----NGTTGLLHPT-GKEG---- 412 (474)
Q Consensus 347 ----~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~-----~~~~G~l~~~-~d~~---- 412 (474)
--+..+++..||+.|+||. +|+||.+++|+.++|+|.|+||..|....+. ....|+.+-. .+.+
T Consensus 456 dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~ 533 (633)
T PF05693_consen 456 DGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDES 533 (633)
T ss_dssp SSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHH
T ss_pred CCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHH
Confidence 1467889999999999999 9999999999999999999999887654332 1345665533 3322
Q ss_pred hHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011954 413 VTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 413 ~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 465 (474)
++++++.|..+.. ++..+..+++++.+ ..+.++|+.+...|.+.|..++++.
T Consensus 534 v~~la~~l~~f~~~~~rqri~~Rn~ae~-LS~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 534 VNQLADFLYKFCQLSRRQRIIQRNRAER-LSDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH-HGGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666 66666667666654 5566999999999999999888754
No 101
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.56 E-value=1.6e-14 Score=109.82 Aligned_cols=92 Identities=26% Similarity=0.264 Sum_probs=85.8
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 011954 359 VLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGY 438 (474)
Q Consensus 359 v~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~ 438 (474)
+.++|+. .++++..++|+||||+|+|+++.+++.+++.++..+++++ + ++++.+++..+++|++.+++++++|+
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4677888 7999999999999999999999999999998988999998 4 89999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 011954 439 ERVKDRFLEHHMSQRIAL 456 (474)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~ 456 (474)
+++.++|+|+..++++++
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 999999999999998863
No 102
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.55 E-value=4.1e-12 Score=122.67 Aligned_cols=298 Identities=9% Similarity=0.031 Sum_probs=195.4
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-------hhhhhcccccccccccccccHHHHHHhH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-------LEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
..-|+|.+|+..... +...++...+. .++.+..|...+...- ....+.+-.+|-+-..+....+.+....
T Consensus 122 ~~~D~VWVHDYhL~l-lp~~LR~~~~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 122 KDDDIIWIHDYHLLP-FASELRKRGVN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCCCEEEEeccHhhH-HHHHHHHhCCC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHH
Confidence 345899999865433 33344444433 4677777864332211 1112222222222222222223333222
Q ss_pred HHHhcCC------------CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 222 RERLGIR------------MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 222 ~~~~~~~------------~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
.+.+|.. .-++.+.|-|||.+.|........ .....++++.++ ++.+|+.+.|++.-||+..=+
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl 274 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK---NVQNIFSVERLDYSKGLPERF 274 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC---CCeEEEEecccccccCHHHHH
Confidence 2222221 124778899999999876543222 222466777774 466788899999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc----hHHHHHHHHHHHc----CCCC--eEEEecC---CCChHHHHhc
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT----KFETELRNFVAEK----KIQD--HVHFVNK---TLTVSPYLAS 356 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~----~~~~~l~~~~~~~----~l~~--~v~~~g~---~~~~~~~~~~ 356 (474)
+||.++++...+. ..++.|+-+........ ++..++++++.+. |-.+ -|+++.. .+++..+|..
T Consensus 275 ~Afe~fL~~~Pe~---~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ 351 (474)
T PRK10117 275 LAYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351 (474)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHh
Confidence 9999999865542 24677776765332221 2344555555442 2222 2455442 3788899999
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHhcCC-----CEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHH
Q 011954 357 IDVLVQNSQARGECFGRITIEAMAFQL-----PVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERR 430 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma~G~-----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (474)
|||++.++. .+|+-++..|+.||.. .+|.|...|..+.+. ..++++|.| .+++|++|.+.++ .++.+
T Consensus 352 ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d--~~~~A~Ai~~AL~Mp~~Er 424 (474)
T PRK10117 352 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYD--RDEVAAALDRALTMPLAER 424 (474)
T ss_pred ccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCC--HHHHHHHHHHHHcCCHHHH
Confidence 999999999 9999999999999976 378888888877772 489999999 9999999999999 66677
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 431 LTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 431 ~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
++.-+..++.+.+ ++....++.+++-+..+-..
T Consensus 425 ~~R~~~l~~~v~~-~dv~~W~~~fL~~L~~~~~~ 457 (474)
T PRK10117 425 ISRHAEMLDVIVK-NDINHWQECFISDLKQIVPR 457 (474)
T ss_pred HHHHHHHHHHhhh-CCHHHHHHHHHHHHHHhhhc
Confidence 7776777777766 89999999999888776443
No 103
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.49 E-value=4e-12 Score=123.36 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC-ChHHHHhcCCEEEEcC
Q 011954 286 DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL-TVSPYLASIDVLVQNS 364 (474)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-~~~~~~~~adv~v~ps 364 (474)
+..|+++.+|.+ +.|+++|.| |.+. +....|+++ .++ ++.+.+.|+.. ++.++|..||+++..|
T Consensus 291 s~~I~~i~~Lv~-------~lPd~~f~I-ga~t----e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin 355 (438)
T TIGR02919 291 SDQIEHLEEIVQ-------ALPDYHFHI-AALT----EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDIN 355 (438)
T ss_pred HHHHHHHHHHHH-------hCCCcEEEE-EecC----cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEcc
Confidence 889999999988 449999999 7765 245788888 666 56777888765 9999999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEcCCC-CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 011954 365 QARGECFGRITIEAMAFQLPVLGTAAG-GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERV 441 (474)
Q Consensus 365 ~~~~E~~~~~~~EAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 441 (474)
. .|++++++.||+..|+||++.+.. |..+++.+ |.+++.++ +++|+++|..++.+++.+++.-..-++.+
T Consensus 356 ~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 356 H--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQFRELLEQQREHA 426 (438)
T ss_pred c--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999866 56677754 89999999 99999999999999987766555545444
No 104
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.49 E-value=6.7e-14 Score=120.69 Aligned_cols=158 Identities=15% Similarity=0.047 Sum_probs=80.7
Q ss_pred EEEEecCC-CCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhh-hhccc----chhccceeeeehhcHHHHhhhcC
Q 011954 77 VLLVSHEL-SLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVI-YSLEH----KMLDRGVQVLSAKGEKAINTALN 150 (474)
Q Consensus 77 Il~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 150 (474)
|+++...+ ..||+|+++.+|+++|+++||+|++++........... ..... .................+.+..+
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 45555554 44888999999999999999999999966544332210 00000 00000111112234455666789
Q ss_pred CCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccc--------cchhh-hh----hcccccccccccccccHHHH
Q 011954 151 ADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGH--------YFKLE-YV----KHLPFVAGAMIDSYTTAEYW 217 (474)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~--------~~~~~-~~----~~~~~~~~~~~~s~~~~~~~ 217 (474)
||+||+|......+...... ..+.+++.|+.... ..... .. ...+..+.++++|..+
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~---- 150 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSEST---- 150 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHH----
T ss_pred CCeEEecccchhHHHHHhcc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHH----
Confidence 99999998544332222222 35889999987521 11111 11 1124455555555555
Q ss_pred HHhHHHHhcCCCCCeEEEeCCCCccccc
Q 011954 218 KNRTRERLGIRMPETYVVHLGNSKDLMD 245 (474)
Q Consensus 218 ~~~~~~~~~~~~~ki~vi~ngvd~~~~~ 245 (474)
++.+.+ +|+++.++.|||||||.+.|.
T Consensus 151 ~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 151 KDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred HHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 455555 788999999999999999873
No 105
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.44 E-value=8.4e-11 Score=122.95 Aligned_cols=297 Identities=11% Similarity=0.066 Sum_probs=193.9
Q ss_pred CEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-------hhhhhhcccccccccccccccHHHHHHhHHHH
Q 011954 152 DLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-------KLEYVKHLPFVAGAMIDSYTTAEYWKNRTRER 224 (474)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (474)
|+|.+|+..... +..+++...+. .++.+..|...+... .....+.+-.+|-+-..+....+.+.....+.
T Consensus 203 d~VWVhDYhL~l-lP~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMV-LPTFLRKRFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhH-HHHHHHhhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 899999865443 33444544443 467777786433221 11122222233333333333333333333333
Q ss_pred hcCC---------------CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHH
Q 011954 225 LGIR---------------MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 225 ~~~~---------------~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 289 (474)
+|.. .-++.+.|-|||.+.|..............+++++++- .++.+|+.+.|++.-||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 3332 22477889999999886654333223334667777753 3567888999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc----hHHHHHHHHHHH----cCCC--CeEEEecC---CCChHHHHhc
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT----KFETELRNFVAE----KKIQ--DHVHFVNK---TLTVSPYLAS 356 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~----~~~~~l~~~~~~----~~l~--~~v~~~g~---~~~~~~~~~~ 356 (474)
.||.++++...+. ..++.|+-+.....+.. +...++.+++.+ +|-. ..|+++.. .+++.++|..
T Consensus 359 ~A~e~~L~~~P~~---~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPEW---QGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCccc---cCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 9999998854432 13456776665432222 233444455544 3322 13566642 3789999999
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHhcCC-------------------CEEEcCCCCcceeeeeCCceeeecCCCCChHHHH
Q 011954 357 IDVLVQNSQARGECFGRITIEAMAFQL-------------------PVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLA 417 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma~G~-------------------PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la 417 (474)
||+++.++. .+|+-++..|+.+|.. .+|.|...|+...+. ..++++|.| ++++|
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d--~~~~a 508 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWN--IDAVA 508 (854)
T ss_pred ccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECCCC--HHHHH
Confidence 999999999 9999999999999864 367777777765552 479999999 99999
Q ss_pred HHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 418 NNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 418 ~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
++|.+.++ .++.++..-+..++++.+ ++....++.++.-++.+.+
T Consensus 509 ~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 509 DAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARSFLQDLERTCR 554 (854)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHH
Confidence 99999999 555666656677777765 8999999988887777643
No 106
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.6e-10 Score=108.77 Aligned_cols=296 Identities=14% Similarity=0.129 Sum_probs=192.5
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc--c-----hhhhhhcccccccccccccccHHHHHHhH
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY--F-----KLEYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
..=|+|.+|+.... ++..+++...+.. ++.+..|...+.. + ...+...+-.++-+-.......+.+....
T Consensus 146 ~~gDiIWVhDYhL~-L~P~mlR~~~~~~--~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~ 222 (486)
T COG0380 146 EPGDIIWVHDYHLL-LVPQMLRERIPDA--KIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLC 222 (486)
T ss_pred CCCCEEEEEechhh-hhHHHHHHhCCCc--eEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHH
Confidence 45599999985543 3455566666553 6777777543221 1 11111222122222222222222222222
Q ss_pred HHHhc-------------CCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHH
Q 011954 222 RERLG-------------IRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLF 288 (474)
Q Consensus 222 ~~~~~-------------~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~l 288 (474)
.+..+ -...++..+|-|||+..|............-.++++.++ .+..+|+.+.|++.-||+..=
T Consensus 223 ~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~r 300 (486)
T COG0380 223 SRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQR 300 (486)
T ss_pred HHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCcHHH
Confidence 22221 122467889999999988765433322223456677664 336788889999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCch----HHHHHHHHHHH----cCCC--CeEEEecC---CCChHHHHh
Q 011954 289 LHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTK----FETELRNFVAE----KKIQ--DHVHFVNK---TLTVSPYLA 355 (474)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~----~~~~l~~~~~~----~~l~--~~v~~~g~---~~~~~~~~~ 355 (474)
+.||.++++...+. ..++.|+-++.....+.+ +..++++++.+ +|.. .-|+|+-. .+++..+|.
T Consensus 301 l~Afe~lL~~~Pe~---~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 301 LLAFERLLEEYPEW---RGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHhChhh---hCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 99999999866553 246778777765544433 33444444443 2221 23445442 378999999
Q ss_pred cCCEEEEcCCCCCCCCchHHHHHHhcC----CCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHH
Q 011954 356 SIDVLVQNSQARGECFGRITIEAMAFQ----LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERR 430 (474)
Q Consensus 356 ~adv~v~ps~~~~E~~~~~~~EAma~G----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (474)
.||+++.++. .+|+-++..|+.+|. =|.|.|...|....+.+ .++++|.| .++++++|.+.++ .++.+
T Consensus 378 ~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d--~~~va~ai~~AL~m~~eEr 450 (486)
T COG0380 378 AADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWD--TKEVADAIKRALTMSLEER 450 (486)
T ss_pred hhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCC--hHHHHHHHHHHhcCCHHHH
Confidence 9999999999 999999999999985 47888888777666632 89999999 9999999999999 66666
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 431 LTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 431 ~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
++.-+..++.+.+ ++....+..+++-+..
T Consensus 451 ~~r~~~~~~~v~~-~d~~~W~~~fl~~la~ 479 (486)
T COG0380 451 KERHEKLLKQVLT-HDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 6666666766655 8888888887666554
No 107
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.35 E-value=1.8e-10 Score=111.81 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC-EEEEEecccc--cCcchHHHHHHHHHHHHHHHHhccCCC
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD-LLFAIINSVS--RGKGQDLFLHSFYESLQLIREKKLQVP 307 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vgrl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (474)
++.++.|++-....... + .+++++. .+++..|.-. ..++++.+++++.++.+ + +
T Consensus 181 k~~~vGnPv~d~l~~~~---------~------~~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~-------~-~ 237 (396)
T TIGR03492 181 RASYLGNPMMDGLEPPE---------R------KPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD-------S-Q 237 (396)
T ss_pred eEEEeCcCHHhcCcccc---------c------cccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh-------C-C
Confidence 68888888744432111 0 0343443 4444555442 25677899999988853 3 5
Q ss_pred cEEEEEEc-CCCCcCchHHHHHHHHHHHcCCC--------------CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCc
Q 011954 308 SMHAVVVG-SDMNAQTKFETELRNFVAEKKIQ--------------DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFG 372 (474)
Q Consensus 308 ~~~l~i~G-~g~~~~~~~~~~l~~~~~~~~l~--------------~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~ 372 (474)
++++++.- ++. ..+.+++...+.+.. +++.+..+..++.++|+.||++|..| |
T Consensus 238 ~~~~v~~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-------G 305 (396)
T TIGR03492 238 PFVFLAAIVPSL-----SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-------G 305 (396)
T ss_pred CeEEEEEeCCCC-----CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-------C
Confidence 77776543 222 455666666655543 23666677788999999999999765 3
Q ss_pred hHHHHHHhcCCCEEEcCCCCcc---eeeeeC----CceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 011954 373 RITIEAMAFQLPVLGTAAGGTM---EIVVNG----TTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRF 445 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~~---e~v~~~----~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~f 445 (474)
.+..|++++|+|+|....++.. .+.+.. ..+......+ ++.+++++..+++|++.+++|.+++++...+..
T Consensus 306 t~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~ 383 (396)
T TIGR03492 306 TATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERCRRNGQERMGPPG 383 (396)
T ss_pred HHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCC
Confidence 4559999999999998744331 122210 2344444555 899999999999999999888865555444445
Q ss_pred CHHHHHHHHHH
Q 011954 446 LEHHMSQRIAL 456 (474)
Q Consensus 446 s~~~~~~~~~~ 456 (474)
..+++++.+.+
T Consensus 384 a~~~ia~~i~~ 394 (396)
T TIGR03492 384 ASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 108
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.6e-10 Score=105.28 Aligned_cols=332 Identities=14% Similarity=0.107 Sum_probs=203.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----cHHHHhh
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK-----GEKAINT 147 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 147 (474)
++.+|.++++.+...-.......+-+++.+.-+||..+... ++..+....++. ..--.+++.. ..-.-+.
T Consensus 258 ~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g-~~~~dal~~rI~----a~~~~~~~~~~~dd~e~a~~I~ 332 (620)
T COG3914 258 KRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLG-PPHTDALQERIS----AAVEKWYPIGRMDDAEIANAIR 332 (620)
T ss_pred cceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecC-CCCchhHHHHHH----HhhhheeccCCcCHHHHHHHHH
Confidence 46789999999887666677888888887777899888755 222222211111 1111122222 2233344
Q ss_pred hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhccccccccccccc----ccHHHHHHhHHH
Q 011954 148 ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSY----TTAEYWKNRTRE 223 (474)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~~~~~~~~~ 223 (474)
....||.+--+....-....++.... .|+..++-+..+. ...+.++.++.+-. ....++.+.+.+
T Consensus 333 ~d~IdILvDl~g~T~d~r~~v~A~Rp----APiqvswlGy~aT-------~g~p~~DY~I~D~y~vPp~ae~yysEkl~R 401 (620)
T COG3914 333 TDGIDILVDLDGHTVDTRCQVFAHRP----APIQVSWLGYPAT-------TGSPNMDYFISDPYTVPPTAEEYYSEKLWR 401 (620)
T ss_pred hcCCeEEEeccCceeccchhhhhcCC----CceEEeecccccc-------cCCCcceEEeeCceecCchHHHHHHHHHHh
Confidence 56788876433221111111111111 2333333322111 11234445444433 333444443221
Q ss_pred HhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhc
Q 011954 224 RLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKK 303 (474)
Q Consensus 224 ~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (474)
++ - .-...+.+.+.... --|.++|+|++.++++++++ ..|-...+++.+.++.+
T Consensus 402 ---Lp-----~--cy~p~d~~~~v~p~--------~sR~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~------ 455 (620)
T COG3914 402 ---LP-----Q--CYQPVDGFEPVTPP--------PSRAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS------ 455 (620)
T ss_pred ---cc-----c--ccCCCCCcccCCCC--------cchhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH------
Confidence 12 1 11222333332221 12778999999999888875 56777778888777766
Q ss_pred cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh
Q 011954 304 LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMA 380 (474)
Q Consensus 304 ~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma 380 (474)
..|+-.|++-|+|+ +++..+.+++.+++.|+. ++++|.+.. ++..+.|..+|+++=+. .-|...+.+||+.
T Consensus 456 -~vP~Svl~L~~~~~--~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa~daLw 529 (620)
T COG3914 456 -AVPNSVLLLKAGGD--DAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTASDALW 529 (620)
T ss_pred -hCCCcEEEEecCCC--cHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc---cCCCccchHHHHH
Confidence 44899999999874 334788999999999985 789999964 67788899999999766 4556789999999
Q ss_pred cCCCEEEc-------CCC-------CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--h
Q 011954 381 FQLPVLGT-------AAG-------GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD--R 444 (474)
Q Consensus 381 ~G~PvI~s-------~~~-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~ 444 (474)
+|+|||+- ..| |++|.| +.. .++..+.-..+-+|...+++.+..-.+.... -
T Consensus 530 m~vPVlT~~G~~FasR~~~si~~~agi~e~v--------A~s----~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL 597 (620)
T COG3914 530 MGVPVLTRVGEQFASRNGASIATNAGIPELV--------ADS----RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPL 597 (620)
T ss_pred hcCceeeeccHHHHHhhhHHHHHhcCCchhh--------cCC----HHHHHHHHHHhcccHHHHHhhHHHHHhccccCcc
Confidence 99999964 222 333333 322 4566666666766777777766554444433 5
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 011954 445 FLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 445 fs~~~~~~~~~~~~~~~~~~ 464 (474)
|+.+.++++++.+|.....+
T Consensus 598 ~d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 598 FDPKAFARKLETLYWGMWSE 617 (620)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 109
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.33 E-value=3.8e-10 Score=104.28 Aligned_cols=253 Identities=17% Similarity=0.179 Sum_probs=142.9
Q ss_pred EEEEEecCCCC-CChh-HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh----------cHH
Q 011954 76 LVLLVSHELSL-SGGP-LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------GEK 143 (474)
Q Consensus 76 kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 143 (474)
||+|......- |.|- .....||++|+++|++|.+++...+.. +.+.+...++.+.... ...
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~-------~~~~i~~~g~~v~~~~~~~~~~~d~~~~~ 73 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGD-------LIDLLLSAGFPVYELPDESSRYDDALELI 73 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-------HHHHHHHcCCeEEEecCCCchhhhHHHHH
Confidence 47777765443 4443 668899999999999999999764431 1234445555554332 234
Q ss_pred HHhhhcCCCEEEEcccc-hhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHH
Q 011954 144 AINTALNADLVVLNTAV-AGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
.+....+||+|++.+.. ...|... ++.. .+.+..+-+...+.+ .++.++..... .+...
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~~-~k~~-----~~~l~~iDD~~~~~~---------~~D~vin~~~~-~~~~~---- 133 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEKL-IKEF-----GRKILVIDDLADRPH---------DCDLLLDQNLG-ADASD---- 133 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHH-HHHh-----CCeEEEEecCCCCCc---------CCCEEEeCCCC-cCHhH----
Confidence 55566799999987643 2333332 2221 122223443321111 22322222221 11111
Q ss_pred HHhc-CCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHH
Q 011954 223 ERLG-IRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIRE 301 (474)
Q Consensus 223 ~~~~-~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (474)
..+ .+... .+.-|.+.-...+ .+.... .....+ ++.+.++++.|...+.+....+++++.++.
T Consensus 134 -y~~~~~~~~--~~l~G~~Y~~lr~---eF~~~~-~~~~~~----~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----- 197 (279)
T TIGR03590 134 -YQGLVPANC--RLLLGPSYALLRE---EFYQLA-TANKRR----KPLRRVLVSFGGADPDNLTLKLLSALAESQ----- 197 (279)
T ss_pred -hcccCcCCC--eEEecchHHhhhH---HHHHhh-Hhhhcc----cccCeEEEEeCCcCCcCHHHHHHHHHhccc-----
Confidence 111 23233 3344554222211 111000 000000 122457778888777766677778776542
Q ss_pred hccCCCcEE-EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh
Q 011954 302 KKLQVPSMH-AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMA 380 (474)
Q Consensus 302 ~~~~~~~~~-l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma 380 (474)
++++ .+++|.+.+ ..+++++.++.. .++++.++++++.++|..||++|.+ .|.++.|+++
T Consensus 198 -----~~~~i~vv~G~~~~----~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a 258 (279)
T TIGR03590 198 -----INISITLVTGSSNP----NLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCC 258 (279)
T ss_pred -----cCceEEEEECCCCc----CHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHH
Confidence 2333 337777631 456777777654 4799999999999999999999963 3589999999
Q ss_pred cCCCEEEcCC
Q 011954 381 FQLPVLGTAA 390 (474)
Q Consensus 381 ~G~PvI~s~~ 390 (474)
+|+|+|+...
T Consensus 259 ~g~P~i~i~~ 268 (279)
T TIGR03590 259 LGLPSLAICL 268 (279)
T ss_pred cCCCEEEEEe
Confidence 9999998754
No 110
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=3.1e-09 Score=99.13 Aligned_cols=310 Identities=14% Similarity=0.132 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh---hcHHHHhhhcCCCEEEEcc--cchhh
Q 011954 91 LLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA---KGEKAINTALNADLVVLNT--AVAGK 163 (474)
Q Consensus 91 ~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~DiV~~~~--~~~~~ 163 (474)
..+.-|.++|.+. ++.+.+-|..... .......+.+. .-..+.++ ...+++....+||+++... .|+..
T Consensus 63 ~a~~pLv~~l~~~~P~~~ilvTt~T~Tg-~e~a~~~~~~~---v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnl 138 (419)
T COG1519 63 LAALPLVRALRERFPDLRILVTTMTPTG-AERAAALFGDS---VIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNL 138 (419)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccH-HHHHHHHcCCC---eEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHH
Confidence 6788999999987 6666665532211 11111111111 11112222 2456777789999887644 23333
Q ss_pred HHhHHhhhcccccccceeeeeecccccc------chhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeC
Q 011954 164 WLDGVLKDKVSQVLPKVLWWIHEMRGHY------FKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHL 237 (474)
Q Consensus 164 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~n 237 (474)
. .-+.+.++ |.+.----..... .+......+..++.+++.+....+.+. .+|..+ +.+..|
T Consensus 139 i-~e~~~~~~-----p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~GN 205 (419)
T COG1519 139 I-NELKRRGI-----PLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVTGN 205 (419)
T ss_pred H-HHHHHcCC-----CEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEecc
Confidence 2 22222222 3222111111111 111223334555555555555444433 456554 666554
Q ss_pred CCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCC
Q 011954 238 GNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSD 317 (474)
Q Consensus 238 gvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g 317 (474)
+-.+.-.+.. .......+|..++.+ +.+++..+. ....-+.++++++++.+ ++|+..++++-.-
T Consensus 206 -lKfd~~~~~~----~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~-------~~~~~llIlVPRH 269 (419)
T COG1519 206 -LKFDIEPPPQ----LAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKK-------QFPNLLLILVPRH 269 (419)
T ss_pred -eeecCCCChh----hHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHh-------hCCCceEEEecCC
Confidence 2222111111 122356788888764 556666664 23334558899998877 6689999998665
Q ss_pred CCcCchHHHHHHHHHHHcCCC------------C-eEEEecCCCChHHHHhcCCEEEE-cCCCCCCCCchHHHHHHhcCC
Q 011954 318 MNAQTKFETELRNFVAEKKIQ------------D-HVHFVNKTLTVSPYLASIDVLVQ-NSQARGECFGRITIEAMAFQL 383 (474)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~l~------------~-~v~~~g~~~~~~~~~~~adv~v~-ps~~~~E~~~~~~~EAma~G~ 383 (474)
| +-...+.+++++.|+. + +|.+....-+|..+|..+|+.++ -|. .+-.|--++|+.++|+
T Consensus 270 p----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSl--v~~GGHN~LEpa~~~~ 343 (419)
T COG1519 270 P----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSL--VPIGGHNPLEPAAFGT 343 (419)
T ss_pred h----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcc--cCCCCCChhhHHHcCC
Confidence 4 6778888899888763 1 23332234789999999999666 455 5567889999999999
Q ss_pred CEEEcCCC----CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 384 PVLGTAAG----GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 384 PvI~s~~~----g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
|||....- .+.+-+.+.+.|+.+++ .+.+++++..+++|++.+.+|++++.+.+.+
T Consensus 344 pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 344 PVIFGPYTFNFSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred CEEeCCccccHHHHHHHHHhcCCeEEECC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99987532 33333334456777764 6789999999988999999999999998876
No 111
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.22 E-value=4.5e-09 Score=101.02 Aligned_cols=199 Identities=16% Similarity=0.220 Sum_probs=113.2
Q ss_pred HhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCC-CEEEEEecccc--cCcchHHHHHHHHHHHHHHH
Q 011954 224 RLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDD-DLLFAIINSVS--RGKGQDLFLHSFYESLQLIR 300 (474)
Q Consensus 224 ~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~vgrl~--~~Kg~~~ll~a~~~l~~~~~ 300 (474)
+.|.++.++.++.|..-......... .+..+.++++++.+ +++++.+-+-. .....+.+.+.++.+.+.
T Consensus 161 ~eg~~~~~i~~tG~~~iD~l~~~~~~------~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~-- 232 (365)
T TIGR03568 161 QMGEDPDRVFNVGSPGLDNILSLDLL------SKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL-- 232 (365)
T ss_pred HcCCCCCcEEEECCcHHHHHHhhhcc------CHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh--
Confidence 35777888998887652222211111 13567788888643 55555554432 233333344444333221
Q ss_pred HhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHH
Q 011954 301 EKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEA 378 (474)
Q Consensus 301 ~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EA 378 (474)
..++.++.-..++ ......+.++++... .+++.+.++ ..++..+++.||++|--|. |.. .||
T Consensus 233 -----~~~~~vi~P~~~p-~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------ggi-~EA 296 (365)
T TIGR03568 233 -----NKNYIFTYPNADA-GSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAVIGNSS------SGI-IEA 296 (365)
T ss_pred -----ccCCEEEEeCCCC-CchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEEEEcCh------hHH-Hhh
Confidence 1234332211222 111123344444211 357999996 4889999999999995542 323 899
Q ss_pred HhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011954 379 MAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALV 457 (474)
Q Consensus 379 ma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 457 (474)
.++|+|+|+ .+.-+|.+..+.+.+++.. | ++++.+++.+++ +++.++.+. ....-|.....++++.++
T Consensus 297 ~~lg~Pvv~--l~~R~e~~~~g~nvl~vg~-~--~~~I~~a~~~~~-~~~~~~~~~-----~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 297 PSFGVPTIN--IGTRQKGRLRADSVIDVDP-D--KEEIVKAIEKLL-DPAFKKSLK-----NVKNPYGDGNSSERIIEI 364 (365)
T ss_pred hhcCCCEEe--ecCCchhhhhcCeEEEeCC-C--HHHHHHHHHHHh-ChHHHHHHh-----hCCCCCCCChHHHHHHHh
Confidence 999999995 4567888877778887743 4 899999999954 444333321 112335555555655543
No 112
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.21 E-value=3.8e-09 Score=98.62 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=158.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh---------------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA--------------- 139 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 139 (474)
|||++=....+ --.+...+++.|.++||+|.|.+...+. ..+.+...|+.....
T Consensus 1 MkIwiDi~~p~---hvhfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPA---HVHFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCch---HHHHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHH
Confidence 56666554322 1257889999999999999999976543 222333333333211
Q ss_pred ---hcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHH
Q 011954 140 ---KGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEY 216 (474)
Q Consensus 140 ---~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 216 (474)
..+..+.+..+||+++++.+.........+ +.|.+....+.... ...+-.++.++.+++....-...
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~l-------giP~I~f~D~e~a~---~~~~Lt~Pla~~i~~P~~~~~~~ 139 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEAARVAFGL-------GIPSIVFNDTEHAI---AQNRLTLPLADVIITPEAIPKEF 139 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHh-------CCCeEEEecCchhh---ccceeehhcCCeeECCcccCHHH
Confidence 122344455899999988755444333322 24555544432111 11223345666666665554443
Q ss_pred HHHhHHHHhcCCCCCeEEE-eCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCc-----ch-HHHH
Q 011954 217 WKNRTRERLGIRMPETYVV-HLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGK-----GQ-DLFL 289 (474)
Q Consensus 217 ~~~~~~~~~~~~~~ki~vi-~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~K-----g~-~~ll 289 (474)
+. ++|.. -++. +||++...+-....+ ..++.+++|+++++++++ |..+.+ |. ..+-
T Consensus 140 ~~-----~~G~~---~~i~~y~G~~E~ayl~~F~P------d~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~~i~~ 202 (335)
T PF04007_consen 140 LK-----RFGAK---NQIRTYNGYKELAYLHPFKP------DPEVLKELGLDDEPYIVV---RPEAWKASYDNGKKSILP 202 (335)
T ss_pred HH-----hcCCc---CCEEEECCeeeEEeecCCCC------ChhHHHHcCCCCCCEEEE---EeccccCeeecCccchHH
Confidence 33 45543 2455 889876443322111 246788899876665554 443322 22 2233
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCC
Q 011954 290 HSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGE 369 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E 369 (474)
+.+.++ ++. .+. ++++.... .. ..+.+++ ++.+....-+..+++.-||++| ++
T Consensus 203 ~ii~~L----~~~----~~~-vV~ipr~~-----~~---~~~~~~~----~~~i~~~~vd~~~Ll~~a~l~I------g~ 255 (335)
T PF04007_consen 203 EIIEEL----EKY----GRN-VVIIPRYE-----DQ---RELFEKY----GVIIPPEPVDGLDLLYYADLVI------GG 255 (335)
T ss_pred HHHHHH----Hhh----Cce-EEEecCCc-----ch---hhHHhcc----CccccCCCCCHHHHHHhcCEEE------eC
Confidence 334333 321 333 55665432 11 1223333 2555555556778999999999 44
Q ss_pred CCchHHHHHHhcCCCEEEcCCC---CcceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 370 CFGRITIEAMAFQLPVLGTAAG---GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 370 ~~~~~~~EAma~G~PvI~s~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
| |....||...|+|.|.+-.| +..+.+ -+.|+++...| ++++.+.+...+
T Consensus 256 g-gTMa~EAA~LGtPaIs~~~g~~~~vd~~L--~~~Gll~~~~~--~~ei~~~v~~~~ 308 (335)
T PF04007_consen 256 G-GTMAREAALLGTPAISCFPGKLLAVDKYL--IEKGLLYHSTD--PDEIVEYVRKNL 308 (335)
T ss_pred C-cHHHHHHHHhCCCEEEecCCcchhHHHHH--HHCCCeEecCC--HHHHHHHHHHhh
Confidence 4 57888999999999997544 233444 24689999888 899888665544
No 113
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.20 E-value=2.6e-09 Score=105.05 Aligned_cols=136 Identities=14% Similarity=0.034 Sum_probs=88.2
Q ss_pred CCCEEEEEecccccC---cchHHHHHHHHHHHHHHHHhccCCCcEE-EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEE
Q 011954 268 DDDLLFAIINSVSRG---KGQDLFLHSFYESLQLIREKKLQVPSMH-AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHF 343 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~---Kg~~~ll~a~~~l~~~~~~~~~~~~~~~-l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~ 343 (474)
.++.+++..|..... +-...+++++.. .+.+ ++.+|.... .. ..++++|.+
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~------------~~~~~i~~~g~~~~-----~~--------~~~~~~v~~ 292 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVAT------------LGQRAILSLGWGGL-----GA--------EDLPDNVRV 292 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHH------------cCCeEEEEccCccc-----cc--------cCCCCceEE
Confidence 445677778887542 233444444432 2344 445555421 11 344579999
Q ss_pred ecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHH
Q 011954 344 VNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANN 419 (474)
Q Consensus 344 ~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (474)
.++. ....+|..||++| .-|...++.||+++|+|+|+....+- .+.+.....|......+.+.+++.++
T Consensus 293 ~~~~-p~~~ll~~~d~~I------~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~a 365 (401)
T cd03784 293 VDFV-PHDWLLPRCAAVV------HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAA 365 (401)
T ss_pred eCCC-CHHHHhhhhheee------ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHH
Confidence 9997 5788999999999 34456899999999999999876542 33344455777776553238999999
Q ss_pred HHHHhhCHHHHHHHHHH
Q 011954 420 IVKLATHVERRLTMGKK 436 (474)
Q Consensus 420 i~~ll~~~~~~~~~~~~ 436 (474)
+.++++++ .+++..+.
T Consensus 366 l~~~l~~~-~~~~~~~~ 381 (401)
T cd03784 366 LRRLLDPP-SRRRAAAL 381 (401)
T ss_pred HHHHhCHH-HHHHHHHH
Confidence 99999753 34444333
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.19 E-value=1e-09 Score=105.67 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=123.7
Q ss_pred HHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-C
Q 011954 261 RESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-D 339 (474)
Q Consensus 261 r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~ 339 (474)
|+.+|+|++.+++++.+++ .|=.+..++++.++++ +.|+.+|++...+. ..++.+++.+.+.|+. +
T Consensus 276 R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~-------~vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~~ 342 (468)
T PF13844_consen 276 RAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILK-------AVPNSRLWLLRFPA----SGEARLRRRFAAHGVDPD 342 (468)
T ss_dssp TGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHH-------HSTTEEEEEEETST----THHHHHHHHHHHTTS-GG
T ss_pred HHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEeeCCH----HHHHHHHHHHHHcCCChh
Confidence 7899999999999888865 6677889999999888 44999998876543 2567889999999986 7
Q ss_pred eEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcce-----eeee-CCceeeecCCCC
Q 011954 340 HVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTME-----IVVN-GTTGLLHPTGKE 411 (474)
Q Consensus 340 ~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e-----~v~~-~~~G~l~~~~d~ 411 (474)
++.|.+.. ++....|+.+|+++=+. .-+.+.+.+||+.+|+|||+-....... ++.. |-.-++.. +
T Consensus 343 Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s- 416 (468)
T PF13844_consen 343 RIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--S- 416 (468)
T ss_dssp GEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--S-
T ss_pred hEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--C-
Confidence 89998853 45556788999999875 3456899999999999999875322211 1110 21223333 2
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGYERVKD--RFLEHHMSQRIALVLREVL 462 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~~~~~~ 462 (474)
.++..+.-.+|.+|++.++++++.-++...+ -|+...+++.+++.|++++
T Consensus 417 -~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 417 -EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp -HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 7899999999999999999999988877643 4999999999999998763
No 115
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.17 E-value=8.8e-10 Score=104.74 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
+.+.+++++|..... .++++++++ ++.+++++|... .+. ..++|++.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~-------~~~--------~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNA-------ADP--------RPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCc-------ccc--------cCCCEEEeecC
Confidence 456788889876554 566666654 778999997652 000 04799999986
Q ss_pred -CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcce------eeeeCCceeeecCCCCChHHHHHHH
Q 011954 348 -LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTME------IVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 348 -~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e------~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
.++.+++..||++|.. +.-.++.||+++|+|+|.-...+..| .++....|...+..+-+++.|.++|
T Consensus 241 ~~~~~~~m~~ad~vIs~------~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l 314 (318)
T PF13528_consen 241 TPDFAELMAAADLVISK------GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFL 314 (318)
T ss_pred hHHHHHHHHhCCEEEEC------CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHH
Confidence 8999999999999943 33456999999999999988766444 2334456666654443378888888
Q ss_pred HHH
Q 011954 421 VKL 423 (474)
Q Consensus 421 ~~l 423 (474)
+++
T Consensus 315 ~~~ 317 (318)
T PF13528_consen 315 ERL 317 (318)
T ss_pred hcC
Confidence 753
No 116
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=1.7e-08 Score=93.30 Aligned_cols=319 Identities=17% Similarity=0.149 Sum_probs=173.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhc--ccchhcccee-ee-eh-------hcH
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSL--EHKMLDRGVQ-VL-SA-------KGE 142 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~-~~-------~~~ 142 (474)
++||.++..+.+- ..+-..|.++|+++=-+|.++...++....+....+ ...+...|+. +. .. +..
T Consensus 1 ~~ki~i~AGE~SG---DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEASG---DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccch---hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678888876532 256778889998753377777654332111110000 0011111110 00 00 111
Q ss_pred HHHhhhcCCCEEEEccc-chhhHHhHHhhhcccccccceeeeeeccccccchhh---hhhcccccccccccccccHHHHH
Q 011954 143 KAINTALNADLVVLNTA-VAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLE---YVKHLPFVAGAMIDSYTTAEYWK 218 (474)
Q Consensus 143 ~~~~~~~~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~ 218 (474)
.+.....+||++++-++ ....-+...+++..|. .|+++++- +..+.++ .....+.+|...+...+=.+++.
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~--i~iihYV~---PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~ 152 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPK--IKIIHYVS---PSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYD 152 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCC--CCeEEEEC---cceeeechhhHHHHHHHhhHeeeecCCCHHHHH
Confidence 22233589999988763 3344444444444333 25544443 3333222 22333566666666666666655
Q ss_pred HhHHHHhcCCCCCeEEEeCCCCccc-cchhhhhHHHHHhHHHHHHhcCCCCCC-EEEEEecccccCcchHHHHHHHHHHH
Q 011954 219 NRTRERLGIRMPETYVVHLGNSKDL-MDIAEDSVARRVLREHVRESLGVRDDD-LLFAIINSVSRGKGQDLFLHSFYESL 296 (474)
Q Consensus 219 ~~~~~~~~~~~~ki~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vgrl~~~Kg~~~ll~a~~~l~ 296 (474)
++|.+ .+.|.++.-.+. +.++ ++..|++++++.+. .+.+..|+ +.--+..++..|.+..
T Consensus 153 -----k~g~~---~~yVGHpl~d~i~~~~~---------r~~ar~~l~~~~~~~~lalLPGS--R~sEI~rl~~~f~~a~ 213 (381)
T COG0763 153 -----KFGLP---CTYVGHPLADEIPLLPD---------REAAREKLGIDADEKTLALLPGS--RRSEIRRLLPPFVQAA 213 (381)
T ss_pred -----hcCCC---eEEeCChhhhhcccccc---------HHHHHHHhCCCCCCCeEEEecCC--cHHHHHHHHHHHHHHH
Confidence 34543 667777664333 2222 46689999998776 44445563 3333444444444444
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+.+++ ++|+.++++--... ..+.++....+.... ..+++. ..+-.+.+..||+.+..| |.+.
T Consensus 214 ~~l~~---~~~~~~~vlp~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~aD~al~aS-------GT~t 276 (381)
T COG0763 214 QELKA---RYPDLKFVLPLVNA-----KYRRIIEEALKWEVAGLSLILI--DGEKRKAFAAADAALAAS-------GTAT 276 (381)
T ss_pred HHHHh---hCCCceEEEecCcH-----HHHHHHHHHhhccccCceEEec--CchHHHHHHHhhHHHHhc-------cHHH
Confidence 44443 56999999888763 434444444333221 122222 236678999999999776 7899
Q ss_pred HHHHhcCCCEEEc-----------------CCCCcceeeeeCCc--eeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 011954 376 IEAMAFQLPVLGT-----------------AAGGTMEIVVNGTT--GLLHPTGKEGVTPLANNIVKLATHVERRLTMGKK 436 (474)
Q Consensus 376 ~EAma~G~PvI~s-----------------~~~g~~e~v~~~~~--G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (474)
+|+|.+|+|.|++ ..-+.+.++.+... -++-+.-. ++.+++++..++.|.+.++++.+.
T Consensus 277 LE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~--pe~la~~l~~ll~~~~~~~~~~~~ 354 (381)
T COG0763 277 LEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCT--PENLARALEELLLNGDRREALKEK 354 (381)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcC--HHHHHHHHHHHhcChHhHHHHHHH
Confidence 9999999999876 12233334322110 01112223 899999999999988666665554
Q ss_pred HH
Q 011954 437 GY 438 (474)
Q Consensus 437 ~~ 438 (474)
..
T Consensus 355 ~~ 356 (381)
T COG0763 355 FR 356 (381)
T ss_pred HH
Confidence 33
No 117
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.08 E-value=3.1e-08 Score=93.86 Aligned_cols=301 Identities=18% Similarity=0.167 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcc--cchhccce-eee-e-------hhcHHHHhhhcCCCEEEEcc
Q 011954 90 PLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLE--HKMLDRGV-QVL-S-------AKGEKAINTALNADLVVLNT 158 (474)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~-------~~~~~~~~~~~~~DiV~~~~ 158 (474)
..+...|+++|++.+-++.++...++.........+. ..+...|+ .++ . ...........+||+|+.-+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID 90 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILID 90 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4789999999999887888777554322111000000 00001111 000 0 11223344568999998876
Q ss_pred c-chhhHHhHHhhhcccccccceeeeeeccccccchh---hhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEE
Q 011954 159 A-VAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL---EYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYV 234 (474)
Q Consensus 159 ~-~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~v 234 (474)
. .....+...++... +..|+++++- +..+.+ +....-+.+|...+...+=.+++++ .| -++..
T Consensus 91 ~pgFNlrlak~lk~~~--~~~~viyYI~---PqvWAWr~~R~~~i~~~~D~ll~ifPFE~~~y~~-----~g---~~~~~ 157 (373)
T PF02684_consen 91 YPGFNLRLAKKLKKRG--IPIKVIYYIS---PQVWAWRPGRAKKIKKYVDHLLVIFPFEPEFYKK-----HG---VPVTY 157 (373)
T ss_pred CCCccHHHHHHHHHhC--CCceEEEEEC---CceeeeCccHHHHHHHHHhheeECCcccHHHHhc-----cC---CCeEE
Confidence 3 33333333333322 1123555554 222221 1222224556666666666666553 34 34778
Q ss_pred EeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCE-EEEEecc-ccc-CcchHHHHHHHHHHHHHHHHhccCCCcEEE
Q 011954 235 VHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDL-LFAIINS-VSR-GKGQDLFLHSFYESLQLIREKKLQVPSMHA 311 (474)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vgr-l~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (474)
+.|+.-... .+... +...++.+ ++.++. +.+..|+ -.. .+....++++++++.+ ++|++++
T Consensus 158 VGHPl~d~~-~~~~~-------~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~-------~~p~l~f 221 (373)
T PF02684_consen 158 VGHPLLDEV-KPEPD-------RAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK-------QRPDLQF 221 (373)
T ss_pred ECCcchhhh-ccCCC-------HHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-------hCCCeEE
Confidence 888763322 22111 24455666 666654 4455553 222 4456777888887766 5699999
Q ss_pred EEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc-CC
Q 011954 312 VVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT-AA 390 (474)
Q Consensus 312 ~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s-~~ 390 (474)
++..... ...+.+++.....+....+.+ ...+-.+.|+.||+.+..| |.+.+|++.+|+|.|+. ..
T Consensus 222 vvp~a~~----~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 222 VVPVAPE----VHEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVAYKV 288 (373)
T ss_pred EEecCCH----HHHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEEEcC
Confidence 9887643 233345556555544323322 2357788999999999777 78999999999998765 21
Q ss_pred C----------------CcceeeeeCC-c-eeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 011954 391 G----------------GTMEIVVNGT-T-GLLHPTGKEGVTPLANNIVKLATHVERRLTMG 434 (474)
Q Consensus 391 ~----------------g~~e~v~~~~-~-G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 434 (474)
+ |++.++-+.+ . =++-+..+ ++.+++++..+++|++.++...
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~--~~~i~~~~~~ll~~~~~~~~~~ 348 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDAT--PENIAAELLELLENPEKRKKQK 348 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCC--HHHHHHHHHHHhcCHHHHHHHH
Confidence 1 2333332211 0 11222334 8999999999999987644443
No 118
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.4e-07 Score=87.52 Aligned_cols=347 Identities=17% Similarity=0.152 Sum_probs=191.8
Q ss_pred cccCEEEEEecCCCCCChh-HHHHHHHHHHHhcC-cEEEEEe-CC-CCCCchhh-hhhcccchhccceeee---------
Q 011954 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVG-AEVVWIT-NQ-KPNEPDEV-IYSLEHKMLDRGVQVL--------- 137 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G-~~V~v~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~--------- 137 (474)
|.+|||++|...-+ | .-+.-+++++.+.+ .+..++. .+ .+.+-... ...+.-.-......+.
T Consensus 1 m~~~Kv~~I~GTRP----E~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~ 76 (383)
T COG0381 1 MKMLKVLTIFGTRP----EAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEI 76 (383)
T ss_pred CCceEEEEEEecCH----HHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHH
Confidence 56889999985321 2 34778889998876 6666555 32 21111111 0000000001111111
Q ss_pred ---ehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccc--ccchhhhhhcccccccccccccc
Q 011954 138 ---SAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRG--HYFKLEYVKHLPFVAGAMIDSYT 212 (474)
Q Consensus 138 ---~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~--~~~~~~~~~~~~~~~~~~~~s~~ 212 (474)
.......++...+||+|.+|.-....+...+.. .. ...|+..---+.+. .++.....+ .+...++...+
T Consensus 77 t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa-~~--~~IpV~HvEAGlRt~~~~~PEE~NR---~l~~~~S~~hf 150 (383)
T COG0381 77 TGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAA-FY--LKIPVGHVEAGLRTGDLYFPEEINR---RLTSHLSDLHF 150 (383)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHH-HH--hCCceEEEecccccCCCCCcHHHHH---HHHHHhhhhhc
Confidence 112455667789999999987433332222111 11 11233222222211 112222222 22233333333
Q ss_pred cHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHh-cCCCCCCEEEEEeccccc-CcchHHHHH
Q 011954 213 TAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRES-LGVRDDDLLFAIINSVSR-GKGQDLFLH 290 (474)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~i~~vgrl~~-~Kg~~~ll~ 290 (474)
+.....+.-..+-|++.+++.|+.|.+ .+.+........ ........ ++...++++++..-|-+- .+++..+++
T Consensus 151 apte~ar~nLl~EG~~~~~IfvtGnt~-iDal~~~~~~~~---~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~ 226 (383)
T COG0381 151 APTEIARKNLLREGVPEKRIFVTGNTV-IDALLNTRDRVL---EDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICE 226 (383)
T ss_pred CChHHHHHHHHHcCCCccceEEeCChH-HHHHHHHHhhhc---cchhhHHhhhccccCcEEEEEcchhhcccccHHHHHH
Confidence 333333333345699999999999976 333222211100 01112222 444455677777766554 388889999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHH-HHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFV-AEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQAR 367 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~-~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~ 367 (474)
++.++.+ +++++.++.--.. ...+++.. ..++-.++|.++.+. .+...++..|-+.+--|
T Consensus 227 al~~i~~-------~~~~~~viyp~H~-------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS--- 289 (383)
T COG0381 227 ALREIAE-------EYPDVIVIYPVHP-------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS--- 289 (383)
T ss_pred HHHHHHH-------hCCCceEEEeCCC-------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC---
Confidence 9988877 4467766654432 23344444 556666779998875 67788888886666333
Q ss_pred CCCCchHHHHHHhcCCCEEEcCCC-CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 011954 368 GECFGRITIEAMAFQLPVLGTAAG-GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 368 ~E~~~~~~~EAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs 446 (474)
|...=||-..|+||++-+.+ .-+|.+..| +-.++.. + .+.+.+++..++++++.+++|++.. ..|.
T Consensus 290 ----GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~-~--~~~i~~~~~~ll~~~~~~~~m~~~~-----npYg 356 (383)
T COG0381 290 ----GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGT-D--EENILDAATELLEDEEFYERMSNAK-----NPYG 356 (383)
T ss_pred ----CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCc-c--HHHHHHHHHHHhhChHHHHHHhccc-----CCCc
Confidence 44677999999999987644 557776433 4444443 3 7999999999999999998886643 3355
Q ss_pred HHHHHHHHHHHHHHHH
Q 011954 447 EHHMSQRIALVLREVL 462 (474)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (474)
-....+++.+++..-.
T Consensus 357 dg~as~rIv~~l~~~~ 372 (383)
T COG0381 357 DGNASERIVEILLNYF 372 (383)
T ss_pred CcchHHHHHHHHHHHh
Confidence 5555666666555443
No 119
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.01 E-value=6.2e-10 Score=93.97 Aligned_cols=135 Identities=21% Similarity=0.145 Sum_probs=66.3
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee---------------hhcHHHHh--hhc
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS---------------AKGEKAIN--TAL 149 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~--~~~ 149 (474)
||+++++.+|+++|.+.||+|++++...+....+ ....++.+.. ...+..+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE--------EEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S--------EEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc--------cccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 7889999999999999999999999655443211 1111222211 11233444 668
Q ss_pred CCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc---hh-----hhhhcccccccccccccccHHHHHHhH
Q 011954 150 NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF---KL-----EYVKHLPFVAGAMIDSYTTAEYWKNRT 221 (474)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~---~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (474)
+||+||+|++..+ ++....+.. ...|++.++|+...... .. .....+..++.+++.|....+ .+
T Consensus 73 ~~Dvv~~~~~~~~-~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~----~l 144 (160)
T PF13579_consen 73 RPDVVHAHSPTAG-LVAALARRR---RGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRR----YL 144 (160)
T ss_dssp --SEEEEEHHHHH-HHHHHHHHH---HT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHH----HH
T ss_pred CCeEEEecccchh-HHHHHHHHc---cCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHH----HH
Confidence 9999999985433 223322211 24689999998532211 11 112334555666655555544 44
Q ss_pred HHHhcCCCCCeEEEeCC
Q 011954 222 RERLGIRMPETYVVHLG 238 (474)
Q Consensus 222 ~~~~~~~~~ki~vi~ng 238 (474)
.+ +|++.+++.|||||
T Consensus 145 ~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 145 RR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HH-H---GGGEEE----
T ss_pred HH-hCCCCCcEEEeCcC
Confidence 44 78888999999998
No 120
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.84 E-value=7.6e-07 Score=84.52 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCeEEEecCC-CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcce------eeeeCCceeeecCCC
Q 011954 338 QDHVHFVNKT-LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTME------IVVNGTTGLLHPTGK 410 (474)
Q Consensus 338 ~~~v~~~g~~-~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e------~v~~~~~G~l~~~~d 410 (474)
.+++.+.++. +++.++|..||++|.-+ ...++.||+++|+|+|.....+..| .+.+...|...+..+
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~------G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHG------GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECC------ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 4689999987 58999999999999544 3357999999999999988776444 344556788877665
Q ss_pred CChHHHHHHHHHHhhC
Q 011954 411 EGVTPLANNIVKLATH 426 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~ 426 (474)
. ++.+++...+++
T Consensus 302 --~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 302 --L-RLLEAILDIRNM 314 (321)
T ss_pred --H-HHHHHHHhcccc
Confidence 5 555555554444
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.80 E-value=2.5e-06 Score=84.70 Aligned_cols=318 Identities=12% Similarity=0.086 Sum_probs=169.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcc--cchhccce-ee-ee-------hhcH
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLE--HKMLDRGV-QV-LS-------AKGE 142 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~~-------~~~~ 142 (474)
..||.++..+.+ |..+...|+++|+++.-++.+....++.........+. +.+.-.|+ .+ .. ....
T Consensus 226 ~~kIfI~AGE~S---GDlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l 302 (608)
T PRK01021 226 NTSCFISAGEHS---GDTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKL 302 (608)
T ss_pred CCeEEEEecccc---HHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 457888776543 24778899999998877777776544322111000000 00000010 00 00 1122
Q ss_pred HHHhhhcCCCEEEEccc-chhhHHhHHhhhcccccccceeeeeeccccccchh---hhhhcccccccccccccccHHHHH
Q 011954 143 KAINTALNADLVVLNTA-VAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL---EYVKHLPFVAGAMIDSYTTAEYWK 218 (474)
Q Consensus 143 ~~~~~~~~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~ 218 (474)
.......+||++++-+. .....+...+++. .+..|+++++- +..+.+ +..+.-+.+|...+...+=.++++
T Consensus 303 ~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~--Gi~ipviyYVs---PqVWAWR~~Rikki~k~vD~ll~IfPFE~~~y~ 377 (608)
T PRK01021 303 YKTILKTNPRTVICIDFPDFHFLLIKKLRKR--GYKGKIVHYVC---PSIWAWRPKRKTILEKYLDLLLLILPFEQNLFK 377 (608)
T ss_pred HHHHHhcCCCEEEEeCCCCCCHHHHHHHHhc--CCCCCEEEEEC---ccceeeCcchHHHHHHHhhhheecCccCHHHHH
Confidence 23344589999998663 3333333333322 11136665554 222222 222233455666666666666655
Q ss_pred HhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC-EEEEEecc-ccc-CcchHHHHHHHHHH
Q 011954 219 NRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD-LLFAIINS-VSR-GKGQDLFLHSFYES 295 (474)
Q Consensus 219 ~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vgr-l~~-~Kg~~~ll~a~~~l 295 (474)
+ .| -+++.+.|+.-.. .....+ +++.++++|++++. .+-+..|. -.. .+..+.+++|++.
T Consensus 378 ~-----~g---v~v~yVGHPL~d~-i~~~~~-------~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~- 440 (608)
T PRK01021 378 D-----SP---LRTVYLGHPLVET-ISSFSP-------NLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLA- 440 (608)
T ss_pred h-----cC---CCeEEECCcHHhh-cccCCC-------HHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH-
Confidence 3 34 3467777776322 211111 35668889997554 55556663 222 4466677777751
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 296 LQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+.++ ++.++++....+ ...+.+++..+..+. -.+.+.... +-.+++++||+.+..| |.+.
T Consensus 441 -~~l~------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~~-~~~~~m~aaD~aLaaS-------GTaT 500 (608)
T PRK01021 441 -SSLA------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPSQ-FRYELMRECDCALAKC-------GTIV 500 (608)
T ss_pred -HHhc------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecCc-chHHHHHhcCeeeecC-------CHHH
Confidence 1111 357887754332 134556666654331 022333221 2379999999999877 7899
Q ss_pred HHHHhcCCCEEEc-CCC------------------CcceeeeeCC-ceeee---cCCCCChHHHHHHHHHHhhCHHHHHH
Q 011954 376 IEAMAFQLPVLGT-AAG------------------GTMEIVVNGT-TGLLH---PTGKEGVTPLANNIVKLATHVERRLT 432 (474)
Q Consensus 376 ~EAma~G~PvI~s-~~~------------------g~~e~v~~~~-~G~l~---~~~d~~~~~la~~i~~ll~~~~~~~~ 432 (474)
+|++.+|+|.|+. ..+ +++.++.+.+ .--+. +.-+ ++.+++++ +++.|++.+++
T Consensus 501 LEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t--pe~La~~l-~lL~d~~~r~~ 577 (608)
T PRK01021 501 LETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ--PEEVAAAL-DILKTSQSKEK 577 (608)
T ss_pred HHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC--HHHHHHHH-HHhcCHHHHHH
Confidence 9999999998874 222 2222222211 01112 2233 89999996 88888887777
Q ss_pred HHHHHHH
Q 011954 433 MGKKGYE 439 (474)
Q Consensus 433 ~~~~~~~ 439 (474)
+.+...+
T Consensus 578 ~~~~l~~ 584 (608)
T PRK01021 578 QKDACRD 584 (608)
T ss_pred HHHHHHH
Confidence 7665554
No 122
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=1.2e-06 Score=80.76 Aligned_cols=326 Identities=12% Similarity=0.071 Sum_probs=184.6
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceee-ee----hhcHHHHhhhcCCCEEEEcccc-
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQV-LS----AKGEKAINTALNADLVVLNTAV- 160 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~DiV~~~~~~- 160 (474)
+|...+..-+.++|...||+|..+-+....... ........+... +. -.......+..++|+|.+....
T Consensus 14 ~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~ 88 (373)
T COG4641 14 NGSAEYYRGLLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDD 88 (373)
T ss_pred CCchhhHHHHHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccc
Confidence 455577888899999999999998754321100 011111111111 11 1122345567899999876522
Q ss_pred ------hhhHHhHHhhhcccccccceeeeeecccc--ccchh----hh-hhcccccccccccccccHHHHHHhHHHHhcC
Q 011954 161 ------AGKWLDGVLKDKVSQVLPKVLWWIHEMRG--HYFKL----EY-VKHLPFVAGAMIDSYTTAEYWKNRTRERLGI 227 (474)
Q Consensus 161 ------~~~~~~~~~~~~~~~~~~~~v~~~h~~~~--~~~~~----~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (474)
...+...+... ..|+++|.-+..- ..+.. .. ++.+.-.+.+++..... ....+.+..
T Consensus 89 ~~~~~~~~~~~a~l~~~-----~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l---~~~~yyq~~-- 158 (373)
T COG4641 89 QPDEESTIDLWAWLKRK-----CLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGL---VANKYYQEG-- 158 (373)
T ss_pred cccceehHHHHHHhhcC-----CcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchH---HHHHHHHhh--
Confidence 12222222222 2244444333210 11111 11 01111111111111111 122222222
Q ss_pred CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC
Q 011954 228 RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307 (474)
Q Consensus 228 ~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (474)
-..+..-++.++|.+.|.+.+... .-..-+.++|+..+. ..+.+-+.+.+-...+ ..
T Consensus 159 ~~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl------~v 215 (373)
T COG4641 159 GARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKL------MV 215 (373)
T ss_pred cccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-HHHHHHHHhhccchhh------hc
Confidence 245688999999999998776321 122357778876554 2232322222211111 01
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC---CCChHHHHhcCCEEEEcCCCC-CCC---CchHHHHHHh
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK---TLTVSPYLASIDVLVQNSQAR-GEC---FGRITIEAMA 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---~~~~~~~~~~adv~v~ps~~~-~E~---~~~~~~EAma 380 (474)
+-++...|..- ...+.. .--.+++...|+ ...+...+...|+.+.-++.. .++ +.+-+.|+|+
T Consensus 216 ~rr~~~~g~~y------~~~~~~----~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiag 285 (373)
T COG4641 216 DRRFYVLGPRY------PDDIWG----RTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAG 285 (373)
T ss_pred cceeeecCCcc------chhhhc----ccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhh
Confidence 34566666641 111111 111234555554 266888889999988754421 122 3678999999
Q ss_pred cCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 381 FQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
||.|.|+....++.-.+.+|+.-++.. | ..++.+.+..++..++.++++++.+++++...|+.+.-+..+++....
T Consensus 286 c~~~liT~~~~~~e~~f~pgk~~iv~~--d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 286 CGGFLITDYWKDLEKFFKPGKDIIVYQ--D--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred cCCccccccHHHHHHhcCCchheEEec--C--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999888888887776555544 3 789999999999999999999999999999999999988888888877
Q ss_pred HHhh
Q 011954 461 VLQY 464 (474)
Q Consensus 461 ~~~~ 464 (474)
+...
T Consensus 362 I~~r 365 (373)
T COG4641 362 INIR 365 (373)
T ss_pred HHHh
Confidence 5443
No 123
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=4.9e-06 Score=73.28 Aligned_cols=295 Identities=17% Similarity=0.136 Sum_probs=154.2
Q ss_pred CEEEEEecCCCC-CChh-HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 75 ~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
|||+|++....- |+|. .....||++|.+.|..+..++.+.... . +................ .++..++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~---~---~~~~~~~f~~~~~~~~n---~ik~~k~d 71 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA---I---IHKVYEGFKVLEGRGNN---LIKEEKFD 71 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh---h---hhhhhhhccceeeeccc---ccccccCC
Confidence 789999987544 5553 778899999999998888888654221 0 11111111111111111 55678999
Q ss_pred EEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCe
Q 011954 153 LVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPET 232 (474)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki 232 (474)
+++.-+.....-.....+. ....+.+. +.+.....+. ..+.+ ...... -.+.++.-+.+.
T Consensus 72 ~lI~Dsygl~~dd~k~ik~---e~~~k~l~-fDd~~~~~~~--------d~d~i---vN~~~~-----a~~~y~~v~~k~ 131 (318)
T COG3980 72 LLIFDSYGLNADDFKLIKE---EAGSKILI-FDDENAKSFK--------DNDLI---VNAILN-----ANDYYGLVPNKT 131 (318)
T ss_pred EEEEeccCCCHHHHHHHHH---HhCCcEEE-ecCCCccchh--------hhHhh---hhhhhc-----chhhccccCcce
Confidence 9998763322211111110 01123332 2222121111 11111 111111 111334444443
Q ss_pred EEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEE
Q 011954 233 YVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAV 312 (474)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ 312 (474)
-++-|.+.-...+..... +++..++ +.+-+++..|. +..|| +.++.++.|.+ .++.+.
T Consensus 132 -~~~lGp~y~~lr~eF~~~-----r~~~~~r----~~r~ilI~lGG-sDpk~--lt~kvl~~L~~---------~~~nl~ 189 (318)
T COG3980 132 -RYYLGPGYAPLRPEFYAL-----REENTER----PKRDILITLGG-SDPKN--LTLKVLAELEQ---------KNVNLH 189 (318)
T ss_pred -EEEecCCceeccHHHHHh-----HHHHhhc----chheEEEEccC-CChhh--hHHHHHHHhhc---------cCeeEE
Confidence 345565544433322111 2222222 22334455664 34454 46677777744 334444
Q ss_pred -EEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEE----
Q 011954 313 -VVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLG---- 387 (474)
Q Consensus 313 -i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~---- 387 (474)
++|++.+ ....+++.++++ +++.+.-..++|+.++..||..+.. -|.++.||...|+|.++
T Consensus 190 iV~gs~~p----~l~~l~k~~~~~---~~i~~~~~~~dma~LMke~d~aI~A-------aGstlyEa~~lgvP~l~l~~a 255 (318)
T COG3980 190 IVVGSSNP----TLKNLRKRAEKY---PNINLYIDTNDMAELMKEADLAISA-------AGSTLYEALLLGVPSLVLPLA 255 (318)
T ss_pred EEecCCCc----chhHHHHHHhhC---CCeeeEecchhHHHHHHhcchheec-------cchHHHHHHHhcCCceEEeee
Confidence 4454431 345555555554 6899999999999999999999943 37899999999999432
Q ss_pred cCCCCcceeeeeCCceeeecCC--CCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 388 TAAGGTMEIVVNGTTGLLHPTG--KEGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 388 s~~~g~~e~v~~~~~G~l~~~~--d~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
.+.-...... ..-|.....+ .. .+.....+.++.+|+..++.+....
T Consensus 256 ~NQ~~~a~~f--~~lg~~~~l~~~l~-~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 256 ENQIATAKEF--EALGIIKQLGYHLK-DLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred ccHHHHHHHH--HhcCchhhccCCCc-hHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 2322221111 1122222221 10 4678888888888998887765543
No 124
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.65 E-value=5.7e-07 Score=76.08 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=90.7
Q ss_pred cCEEEEEecCCC---CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh----------
Q 011954 74 SKLVLLVSHELS---LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK---------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 140 (474)
|+||+++....- .||-|+++.+|+..|.++|++|+|.|.......... .-.|+.++..+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~--------~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF--------EYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc--------ccCCeEEEEeCCCCCCchHHH
Confidence 578999998733 388899999999999999999999996543321111 11122221111
Q ss_pred -----cHHHHh---h--hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh-----hh-----hhcc
Q 011954 141 -----GEKAIN---T--ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL-----EY-----VKHL 200 (474)
Q Consensus 141 -----~~~~~~---~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-----~~-----~~~~ 200 (474)
.+.... + ..+.|+|+++....+.++....+. +.....+++..+|+..-...++ .+ ....
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~av 151 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAV 151 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHH
Confidence 111111 1 136889998876544333333322 2223347777787653222111 11 1223
Q ss_pred cccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCC
Q 011954 201 PFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNS 240 (474)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd 240 (474)
+..+..++++..+.+++++. |+ ..+..+|++|.|
T Consensus 152 k~ad~lIaDs~~I~~y~~~~----y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYIKER----YG--RKKSTFIAYGAD 185 (185)
T ss_pred HhCCEEEEcCHHHHHHHHHH----cC--CCCcEEecCCCC
Confidence 56777888888888877664 54 467899999976
No 125
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.60 E-value=3.8e-06 Score=81.51 Aligned_cols=304 Identities=13% Similarity=0.175 Sum_probs=143.2
Q ss_pred cCEEEEEecCC-CCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 74 SKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 74 ~~kIl~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
+++|++.+... ..++-.+.+.+... -...++++.+++..... .....+..++.....+.+....+..
T Consensus 13 ~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~~~~Ak 80 (369)
T PF04464_consen 13 KKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKSP-----------ELKPKGIKVVKFGSLKHIYYLARAK 80 (369)
T ss_dssp EEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGGG---------------SS-EEEETTSHHHHHHHHHEE
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCchH-----------hhccCCceEEeecHHHHHHHHHhCc
Confidence 56788887532 22333444444333 12456788888865321 2234456666666666666667788
Q ss_pred EEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh----------hhhhcccccccccccccccHHHHHHhHH
Q 011954 153 LVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL----------EYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
++++++......... .....+++...|+........ .........+.+++.|... .+.+.
T Consensus 81 ~~i~~~~~~~~~~~~------~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~----~~~~~ 150 (369)
T PF04464_consen 81 YIISDSYFPDLIYFK------KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFE----KEIFK 150 (369)
T ss_dssp EEEESS---T--TS---------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHH----HHHHH
T ss_pred EEEECCCCCcccccc------cCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHH----HHHHH
Confidence 888885333211111 112357888889862211111 1222334555555555544 44445
Q ss_pred HHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcch------HHHHHHHHHHH
Q 011954 223 ERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQ------DLFLHSFYESL 296 (474)
Q Consensus 223 ~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~------~~ll~a~~~l~ 296 (474)
+.++.+.+++. ..|......-..... ..++.+++.++++.++.+|+|+-.+...... ...++ +.++.
T Consensus 151 ~~f~~~~~~i~--~~G~PR~D~l~~~~~----~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~~l~ 223 (369)
T PF04464_consen 151 KAFGYPEDKIL--VTGYPRNDYLFNKSK----ENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FEKLN 223 (369)
T ss_dssp HHTT--GGGEE--ES--GGGHHHHHSTT-----HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HHHHH
T ss_pred HHhccCcceEE--EeCCCeEhHHhccCH----HHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HHHHH
Confidence 56777766544 455533221111111 1156788899999888899998544332211 11222 22221
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
.+ ...++.+++-.-.. ........ ....++|.+.....++.+++..||++|. + ++-++.
T Consensus 224 -~~-----~~~~~~li~k~Hp~-----~~~~~~~~---~~~~~~i~~~~~~~~~~~ll~~aDiLIT------D-ySSi~f 282 (369)
T PF04464_consen 224 -FL-----LKNNYVLIIKPHPN-----MKKKFKDF---KEDNSNIIFVSDNEDIYDLLAAADILIT------D-YSSIIF 282 (369)
T ss_dssp -HH-----HTTTEEEEE--SHH-----HHTT-------TT-TTTEEE-TT-S-HHHHHHT-SEEEE------S-S-THHH
T ss_pred -HH-----hCCCcEEEEEeCch-----hhhchhhh---hccCCcEEECCCCCCHHHHHHhcCEEEE------e-chhHHH
Confidence 11 12688887776531 11111111 3334688888877899999999999993 2 355899
Q ss_pred HHHhcCCCEEEc--CCC-------CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHH
Q 011954 377 EAMAFQLPVLGT--AAG-------GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLT 432 (474)
Q Consensus 377 EAma~G~PvI~s--~~~-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~ 432 (474)
|++.+++|||.. |.. ...+ ..+...|-.+. + .++|.++|..++++++..++
T Consensus 283 D~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~--~--~~eL~~~i~~~~~~~~~~~~ 342 (369)
T PF04464_consen 283 DFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY--N--FEELIEAIENIIENPDEYKE 342 (369)
T ss_dssp HHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES--S--HHHHHHHHTTHHHHHHHTHH
T ss_pred HHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeC--C--HHHHHHHHHhhhhCCHHHHH
Confidence 999999999954 321 1112 11222344443 2 79999999998876654433
No 126
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.55 E-value=2.1e-06 Score=84.14 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcc----eeeeeCCceeeecCCCCC
Q 011954 337 IQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTM----EIVVNGTTGLLHPTGKEG 412 (474)
Q Consensus 337 l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~----e~v~~~~~G~l~~~~d~~ 412 (474)
+.+++.+.++... .+++..||++|..+ ...+++||+++|+|+|+....+-. +.+.+...|..+...+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hg------G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHG------GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECC------CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 3578999998754 58899999999543 245899999999999997654322 234444567776654333
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 413 VTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
.++++++|.++++|++.++++.+- ++.+...-..+..++.+++++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 789999999999998866666443 333444456666666665543
No 127
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.54 E-value=7.2e-06 Score=77.51 Aligned_cols=247 Identities=14% Similarity=0.046 Sum_probs=123.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccce-ee-eehhcHHHH-----h
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGV-QV-LSAKGEKAI-----N 146 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-----~ 146 (474)
||||.++..+.+ |..+...|+++|++ ++.++...++.. .+...... .+.-.|+ .+ ..+..+++. .
T Consensus 1 ~~~i~i~aGE~S---GD~~ga~l~~~l~~---~~~~~G~GG~~m-~~~~~~~~-~lsv~G~~evl~~~~~~~~~~~~~~~ 72 (347)
T PRK14089 1 MMKILVSALEPS---ANLHLKELLKNLPK---DYELIGIFDKSL-GNPLYDSR-EFSIMGFVDVLPKLFFAKKAIKEMVE 72 (347)
T ss_pred CcEEEEEecccc---HHHHHHHHHHHHhc---CCEEEEEechHH-HHhcCChH-HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468988886553 24677888999987 555555433322 11000000 0000010 00 001111111 1
Q ss_pred hhcCCCEEEEccc-chhhHHhHHhhhcccccccceeeeeeccccccchh---hhhhcccccccccccccccHHHHHHhHH
Q 011954 147 TALNADLVVLNTA-VAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL---EYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 147 ~~~~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
...+||+++.-+. .....+...++...+ ..|+++++- +..+.+ +.....+.++...+...+=.++
T Consensus 73 ~~~~pd~~i~iD~p~Fnl~lak~~k~~~~--~i~viyyi~---PqvWAWr~~R~~~i~k~~d~vl~ifPFE~~~------ 141 (347)
T PRK14089 73 LAKQADKVLLMDSSSFNIPLAKKIKKAYP--KKEIIYYIL---PQVWAWKKGRAKILEKYCDFLASILPFEVQF------ 141 (347)
T ss_pred HhcCCCEEEEeCCCCCCHHHHHHHHhcCC--CCCEEEEEC---ccceeeCcchHHHHHHHHhhhhccCCCCHHH------
Confidence 1379999988653 334444444443321 246665554 222222 1222223444443333222222
Q ss_pred HHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccccc--CcchHHHHHHHHHHHHHHH
Q 011954 223 ERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSR--GKGQDLFLHSFYESLQLIR 300 (474)
Q Consensus 223 ~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~--~Kg~~~ll~a~~~l~~~~~ 300 (474)
|| .++.++.|++-.. .... +.. +++++.+.++.|+-.. .+-+..+++++.++.+
T Consensus 142 --yg---~~~~~VGhPl~d~-~~~~-------------~~~--~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~--- 197 (347)
T PRK14089 142 --YQ---SKATYVGHPLLDE-IKEF-------------KKD--LDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG--- 197 (347)
T ss_pred --hC---CCCEEECCcHHHh-hhhh-------------hhh--cCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh---
Confidence 22 3466777775322 1110 111 2334556666664321 3445556667666643
Q ss_pred HhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh
Q 011954 301 EKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMA 380 (474)
Q Consensus 301 ~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma 380 (474)
+ ...+++.|... .+.+++...+. ..+.+.+ +..++|+.||+.+..| |.+.+|++.
T Consensus 198 ----~--~~~~~i~~a~~------~~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al 252 (347)
T PRK14089 198 ----K--EKILVVPSFFK------GKDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICS-------GTATLEAAL 252 (347)
T ss_pred ----c--CcEEEEeCCCc------HHHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHH
Confidence 2 26788887652 24555544432 2344443 6688999999999766 678889999
Q ss_pred cCCCEEEc
Q 011954 381 FQLPVLGT 388 (474)
Q Consensus 381 ~G~PvI~s 388 (474)
+|+|.|..
T Consensus 253 ~g~P~Vv~ 260 (347)
T PRK14089 253 IGTPFVLA 260 (347)
T ss_pred hCCCEEEE
Confidence 99999875
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.53 E-value=9.6e-06 Score=78.98 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=98.7
Q ss_pred CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC
Q 011954 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL 348 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (474)
.+++.+..|..... ..+++.+-+... .-+.++++...+. .. ..-++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~--------~l~~~vi~~~~~~------~~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALA--------DLDVRVIVSLGGA------RD------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHh--------cCCcEEEEecccc------cc------ccccCCCceEEecCCC
Confidence 34555556655433 333333333322 1467777777541 00 1235567888888873
Q ss_pred ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 349 TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 349 ~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
...++..||++|.. |.-.++.||+.+|+|+|+-..+. ..+-+++-..|...+......+.++++|.+++
T Consensus 294 -~~~~l~~ad~vI~h------GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 294 -QLELLPRADAVIHH------GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred -HHHHhhhcCEEEec------CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHh
Confidence 35699999999954 34568999999999999886553 23445566788887743323899999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011954 425 THVERRLTMGKKGYERVKDRFLEHHMSQRIALV 457 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 457 (474)
+|+..++...+. .+.+.+.-..+++++.+++.
T Consensus 367 ~~~~~~~~~~~~-~~~~~~~~g~~~~a~~le~~ 398 (406)
T COG1819 367 ADDSYRRAAERL-AEEFKEEDGPAKAADLLEEF 398 (406)
T ss_pred cCHHHHHHHHHH-HHHhhhcccHHHHHHHHHHH
Confidence 988766655443 33344434444444444443
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.47 E-value=1.2e-05 Score=72.65 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=117.0
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC-
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK- 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~- 346 (474)
.++..|+.-.+-++.-++..+++++.+.. ..++++++-=+-|..+.+|.+++++.++++--.+++..+-.
T Consensus 144 ~~~~tIlvGNSgd~SN~Hie~L~~l~~~~---------~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~ 214 (322)
T PRK02797 144 AGKMTILVGNSGDRSNRHIEALRALHQQF---------GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK 214 (322)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHh---------CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh
Confidence 34566653344456677888888776653 37888887766655556799999999998876578887764
Q ss_pred --CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC-CCCcceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 347 --TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA-AGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 347 --~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
-++..++++.||+.++.-. +.+|.|+.++ .+.+|+||+.+. ++-..++.+.+ .-++++.++ |-.++.
T Consensus 215 l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~-----L~~~~v-- 284 (322)
T PRK02797 215 LPFDDYLALLRQCDLGYFIFA-RQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQG-LPVLFTGDD-----LDEDIV-- 284 (322)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCC-CeEEecCCc-----ccHHHH--
Confidence 3788999999999988765 3788886555 899999998875 55556665433 333344332 222211
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 424 ATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
.+..+++....++.+. |+.+.+.+.|.++|+....+
T Consensus 285 ---~e~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 285 ---REAQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred ---HHHHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhCC
Confidence 1223444444454444 99999999999999877543
No 130
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.43 E-value=5e-06 Score=79.23 Aligned_cols=272 Identities=13% Similarity=0.082 Sum_probs=132.7
Q ss_pred HHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecc-ccc-----cchhhhhhcccccccccccccccHH
Q 011954 142 EKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEM-RGH-----YFKLEYVKHLPFVAGAMIDSYTTAE 215 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~-~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~ 215 (474)
+..++...+||+|+++.-....+...+.... ...|+ .++|.- +.. ......+..+.++.. ...+..+
T Consensus 59 ~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~---~~ipv-~HieaGlRs~d~~~g~~de~~R~~i~~la~---lhf~~t~ 131 (346)
T PF02350_consen 59 LADVLEREKPDAVLVLGDRNEALAAALAAFY---LNIPV-AHIEAGLRSGDRTEGMPDEINRHAIDKLAH---LHFAPTE 131 (346)
T ss_dssp HHHHHHHHT-SEEEEETTSHHHHHHHHHHHH---TT-EE-EEES-----S-TTSSTTHHHHHHHHHHH-S---EEEESSH
T ss_pred HHHHHHhcCCCEEEEEcCCchHHHHHHHHHH---hCCCE-EEecCCCCccccCCCCchhhhhhhhhhhhh---hhccCCH
Confidence 4556667899999998744333332222221 12353 334432 111 111222222222211 1222223
Q ss_pred HHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHH-HHhc-CCCCCCEEEEEecccccC---cchHHHHH
Q 011954 216 YWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHV-RESL-GVRDDDLLFAIINSVSRG---KGQDLFLH 290 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~-r~~~-~~~~~~~~i~~vgrl~~~---Kg~~~ll~ 290 (474)
..++++. +.|+++.+|+++.|..-... ....... .+.+ ...+ ....++++++..=+.+.. .....+.+
T Consensus 132 ~~~~~L~-~~G~~~~rI~~vG~~~~D~l-~~~~~~~-----~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~ 204 (346)
T PF02350_consen 132 EARERLL-QEGEPPERIFVVGNPGIDAL-LQNKEEI-----EEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILE 204 (346)
T ss_dssp HHHHHHH-HTT--GGGEEE---HHHHHH-HHHHHTT-----CC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHH
T ss_pred HHHHHHH-hcCCCCCeEEEEChHHHHHH-HHhHHHH-----hhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHH
Confidence 3333333 46999999999988652222 1111000 0011 1111 114556666666444332 34556666
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~ 368 (474)
++..+.+. +++.+++.....+ .....+.+...++ +++++..+. .++..+++.|+++|--|
T Consensus 205 ~l~~L~~~--------~~~~vi~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS---- 266 (346)
T PF02350_consen 205 ALKALAER--------QNVPVIFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS---- 266 (346)
T ss_dssp HHHHHHHH--------TTEEEEEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS----
T ss_pred HHHHHHhc--------CCCcEEEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC----
Confidence 66666542 5788888876321 2455665555555 388888864 78899999999999544
Q ss_pred CCCchHHH-HHHhcCCCEEEcCCCC-cceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 011954 369 ECFGRITI-EAMAFQLPVLGTAAGG-TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 369 E~~~~~~~-EAma~G~PvI~s~~~g-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs 446 (474)
| .+. ||..+|+|||.-...| -++.+..+. ..++. .+ .+++.++|.+++++++.+..+.. ...-|.
T Consensus 267 ---s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~-nvlv~-~~--~~~I~~ai~~~l~~~~~~~~~~~-----~~npYg 333 (346)
T PF02350_consen 267 ---S-GIQEEAPSLGKPVVNIRDSGERQEGRERGS-NVLVG-TD--PEAIIQAIEKALSDKDFYRKLKN-----RPNPYG 333 (346)
T ss_dssp ---H-HHHHHGGGGT--EEECSSS-S-HHHHHTTS-EEEET-SS--HHHHHHHHHHHHH-HHHHHHHHC-----S--TT-
T ss_pred ---c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcc-eEEeC-CC--HHHHHHHHHHHHhChHHHHhhcc-----CCCCCC
Confidence 3 456 9999999999985444 466655554 44466 44 89999999999987555444422 112355
Q ss_pred HHHHHHHHHHHH
Q 011954 447 EHHMSQRIALVL 458 (474)
Q Consensus 447 ~~~~~~~~~~~~ 458 (474)
-...++++.+++
T Consensus 334 dG~as~rI~~~L 345 (346)
T PF02350_consen 334 DGNASERIVEIL 345 (346)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCcHHHHHHHhh
Confidence 555566665554
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.41 E-value=0.0001 Score=66.16 Aligned_cols=270 Identities=12% Similarity=0.100 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh-------------------hcHHHHhhhcCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA-------------------KGEKAINTALNA 151 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 151 (474)
.+..++...|.++||+|.+.|...+. +.+.+...|++.... ..+.++....+|
T Consensus 14 hfFk~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kp 85 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKP 85 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 67899999999999999999966554 233333333332211 123355566899
Q ss_pred CEEEE-cccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCC
Q 011954 152 DLVVL-NTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMP 230 (474)
Q Consensus 152 DiV~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (474)
|+.+. |++..... .+. ++.+.+....+.+.. ......++.++.++.....-...+. .+|..+.
T Consensus 86 dv~i~~~s~~l~rv---afg-----Lg~psIi~~D~ehA~---~qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p~ 149 (346)
T COG1817 86 DVAIGKHSPELPRV---AFG-----LGIPSIIFVDNEHAE---AQNKLTLPLADVIITPEAIDEEELL-----DFGADPN 149 (346)
T ss_pred ceEeecCCcchhhH---Hhh-----cCCceEEecCChhHH---HHhhcchhhhhheecccccchHHHH-----HhCCCcc
Confidence 99987 43322221 111 123433323221111 1123334566666655554443322 4566555
Q ss_pred CeEEEeCCCCc----cccchhhhhHHHHHhHHHHHHhcCCCCC-CEEEEEecc-----cccCcchHHHHHHHHHHHHHHH
Q 011954 231 ETYVVHLGNSK----DLMDIAEDSVARRVLREHVRESLGVRDD-DLLFAIINS-----VSRGKGQDLFLHSFYESLQLIR 300 (474)
Q Consensus 231 ki~vi~ngvd~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~vgr-----l~~~Kg~~~ll~a~~~l~~~~~ 300 (474)
++ +-+||+.. ..|.|+ .++-+++|+..+ +++++=.-. ....++.+.+.+++.++.+
T Consensus 150 ~i-~~~~giae~~~v~~f~pd----------~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k--- 215 (346)
T COG1817 150 KI-SGYNGIAELANVYGFVPD----------PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK--- 215 (346)
T ss_pred ce-ecccceeEEeecccCCCC----------HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh---
Confidence 43 55566532 224433 456788999875 444432111 1224566566666666532
Q ss_pred HhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh
Q 011954 301 EKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMA 380 (474)
Q Consensus 301 ~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma 380 (474)
.-.+++-.. .+.++..+.. ++++..-...|--+++.-|++++ .+ .|.-.-||..
T Consensus 216 --------~giV~ipr~--------~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvi------g~-ggTMarEaAl 269 (346)
T COG1817 216 --------YGIVLIPRE--------KEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVI------GA-GGTMAREAAL 269 (346)
T ss_pred --------CcEEEecCc--------hhHHHHHhhh---ccccCCcccccHHHHHhhhheee------cC-CchHHHHHHH
Confidence 224444432 2233333333 23443334445455777888888 33 3566779999
Q ss_pred cCCCEEEcCCC---CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 011954 381 FQLPVLGTAAG---GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVE 428 (474)
Q Consensus 381 ~G~PvI~s~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (474)
.|+|.|++.-| +..+.. -+.|.++...| +.+..+...+++.++.
T Consensus 270 LGtpaIs~~pGkll~vdk~l--ie~G~~~~s~~--~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 270 LGTPAISCYPGKLLAVDKYL--IEKGLLYHSTD--EIAIVEYAVRNLKYRR 316 (346)
T ss_pred hCCceEEecCCccccccHHH--HhcCceeecCC--HHHHHHHHHHHhhchh
Confidence 99999999844 233333 25799999888 6666666666665543
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.31 E-value=6.4e-06 Score=67.71 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=62.8
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcc--cch-h-ccceeeeehhcHHHHhhhcCC
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLE--HKM-L-DRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~ 151 (474)
|||+++... +.++.++++.|.++|+||++++...+........... ..- . ......+....+.++.+..+|
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~ 75 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKP 75 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCC
Confidence 588888754 3578999999999999999999855432221111100 000 0 001111112245666778899
Q ss_pred CEEEEcccchhhHHhHHhhhcccccccceeeeeecc
Q 011954 152 DLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEM 187 (474)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~ 187 (474)
|+||+|++.+...+..+.+.... ..|++++.|+.
T Consensus 76 DvIh~h~~~~~~~~~~l~~~~~~--~~~~i~~~hg~ 109 (139)
T PF13477_consen 76 DVIHCHTPSPYGLFAMLAKKLLK--NKKVIYTVHGS 109 (139)
T ss_pred CEEEEecCChHHHHHHHHHHHcC--CCCEEEEecCC
Confidence 99999997664443433333221 25889999975
No 133
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=5.3e-05 Score=70.82 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeC-CceeeecC-----CCCChHHHH
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNG-TTGLLHPT-----GKEGVTPLA 417 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~~-----~d~~~~~la 417 (474)
-+..++...|.+-|+||. +|+||.+..|.-.+|+|-|+|+.+|. .|.|++. ..|+.+-. .|+.+++|+
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~ 569 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLA 569 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHH
Confidence 467788999999999999 99999999999999999999998875 4445443 34555321 122377888
Q ss_pred HHHHHHhhCHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 418 NNIVKLATHVERRLTMGKK-GYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 418 ~~i~~ll~~~~~~~~~~~~-~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
+.|..+.. ...|+++.++ .-++.....+|..+...|.+.=.-
T Consensus 570 ~~m~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~l 612 (692)
T KOG3742|consen 570 SFMYEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHL 612 (692)
T ss_pred HHHHHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHH
Confidence 88877764 4455555544 445666778999888777654333
No 134
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.29 E-value=0.0034 Score=61.44 Aligned_cols=343 Identities=13% Similarity=0.072 Sum_probs=163.2
Q ss_pred CEEEEEecCC-CCCChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhh------------hhccc----------ch
Q 011954 75 KLVLLVSHEL-SLSGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVI------------YSLEH----------KM 129 (474)
Q Consensus 75 ~kIl~v~~~~-~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~------------~~~~~----------~~ 129 (474)
|||+++..+. ..-|-|-.+..++..|++.. .+++|++........... ..... ..
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 6899988763 34677889999999998865 778888854433210000 00000 00
Q ss_pred -------------hccceee-eeh-hcHHH-HhhhcCCCEEEEcccch-----h-hHHhHHhhhcccccccceeeeeecc
Q 011954 130 -------------LDRGVQV-LSA-KGEKA-INTALNADLVVLNTAVA-----G-KWLDGVLKDKVSQVLPKVLWWIHEM 187 (474)
Q Consensus 130 -------------~~~~~~~-~~~-~~~~~-~~~~~~~DiV~~~~~~~-----~-~~~~~~~~~~~~~~~~~~v~~~h~~ 187 (474)
...|... ... ..... +..-.+.|+++.-.... + ..+...+.... ...|++.+-++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l--~gkpv~l~gqsi 158 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFM--AKKPLYMIGHSV 158 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHH--cCCCEEEECCcC
Confidence 0000000 000 00111 11236789998764211 0 00001111111 345677766665
Q ss_pred ccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhH-HHHHhHHHHHHhcCC
Q 011954 188 RGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSV-ARRVLREHVRESLGV 266 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~-~~~~~~~~~r~~~~~ 266 (474)
+.+.....+...++... -+...++.+.....+.+.+|++.+++.+.+.. .+.-+..... .+ ...+...++.
T Consensus 159 -GPf~~~~~r~l~r~vl~-~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDp---AF~L~~~~~~~~~---~~~~~~~~~~ 230 (426)
T PRK10017 159 -GPFQDEQFNQLANYVFG-HCDALILRESVSLDLMKRSNITTAKVEHGVDT---AWLVDHHTEDFTA---SYAVQHWLDV 230 (426)
T ss_pred -CCcCCHHHHHHHHHHHh-cCCEEEEccHHHHHHHHHhCCCccceEEecCh---hhhCCcccccccc---chhhhhhhcc
Confidence 32222222222222111 12334445555555666789988888876543 3322211000 00 0011111122
Q ss_pred CC-CCEEEEEecccccC-c----chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc-CchHHHHHHHHHHHcCCCC
Q 011954 267 RD-DDLLFAIINSVSRG-K----GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA-QTKFETELRNFVAEKKIQD 339 (474)
Q Consensus 267 ~~-~~~~i~~vgrl~~~-K----g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~-~~~~~~~l~~~~~~~~l~~ 339 (474)
+. .+.+-+.+..+.+. | ..+...+.++++.+.+.+.| -++.|+-.-.+.+. .++.....+++.+.+.-..
T Consensus 231 ~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g---~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~ 307 (426)
T PRK10017 231 AAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEG---YQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPA 307 (426)
T ss_pred cccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCC---CeEEEEecccCccCCCCchHHHHHHHHHhccccc
Confidence 22 23333334433321 2 12334455555555554422 33443322111110 1123344455555555444
Q ss_pred eEEEec---CCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC----CcceeeeeCCceeeecCCCCC
Q 011954 340 HVHFVN---KTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG----GTMEIVVNGTTGLLHPTGKEG 412 (474)
Q Consensus 340 ~v~~~g---~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~----g~~e~v~~~~~G~l~~~~d~~ 412 (474)
+++++. ...++..+++.||++|-.-. -.++=|++.|+|+|+-... |.-+-+ |...++++..+-+
T Consensus 308 ~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~l--g~~~~~~~~~~l~ 378 (426)
T PRK10017 308 RYHVVMDELNDLEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAINYEHKSAGIMQQL--GLPEMAIDIRHLL 378 (426)
T ss_pred ceeEecCCCChHHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEeeehHHHHHHHHHc--CCccEEechhhCC
Confidence 444433 23567789999999986543 2677899999999987543 222222 2223434433323
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 011954 413 VTPLANNIVKLATHVERRLTMGKKGYE 439 (474)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~~~~ 439 (474)
.++|.+.+.+++++.+..++.-+.+.+
T Consensus 379 ~~~Li~~v~~~~~~r~~~~~~l~~~v~ 405 (426)
T PRK10017 379 DGSLQAMVADTLGQLPALNARLAEAVS 405 (426)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 788999999999987765554333333
No 135
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.26 E-value=0.00056 Score=62.94 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=105.1
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-C
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-K 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~ 346 (474)
.++..|+.-.+-++.-++..+++++++. ...++++++-=+-+....+|.+++.+.++++--.+++..+- +
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~---------~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~ 253 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQ---------FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEF 253 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHh---------cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhh
Confidence 3456665334445666787777777653 22678877654443333458888888888876556787765 3
Q ss_pred --CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc-ceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 347 --TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT-MEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 347 --~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~-~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
-+|..++++.||+.++... +.+|.|+.++ .+.+|+||+.+..... .++. +..--+++..++-|...+.++=.++
T Consensus 254 mpf~eYl~lL~~cDl~if~~~-RQQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~-~~~ipVlf~~d~L~~~~v~ea~rql 330 (360)
T PF07429_consen 254 MPFDEYLALLSRCDLGIFNHN-RQQGIGNICL-LLQLGKKVFLSRDNPFWQDLK-EQGIPVLFYGDELDEALVREAQRQL 330 (360)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhhHhHHHH-HHHcCCeEEEecCChHHHHHH-hCCCeEEeccccCCHHHHHHHHHHH
Confidence 3889999999999999987 4888886554 9999999998875554 4443 2222334433221244444444434
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011954 424 ATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREV 461 (474)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 461 (474)
.. .-++.+ .|......+.|.+.+.-+
T Consensus 331 ~~----------~dk~~i--aFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 331 AN----------VDKQQI--AFFAPNYLQGWRQALRLA 356 (360)
T ss_pred hh----------Ccccce--eeeCCchHHHHHHHHHHH
Confidence 32 111111 166666777776666544
No 136
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=5.8e-05 Score=76.60 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=109.7
Q ss_pred CCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCch---HHHHHHHHHHHcCCCCeEE
Q 011954 266 VRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTK---FETELRNFVAEKKIQDHVH 342 (474)
Q Consensus 266 ~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~---~~~~l~~~~~~~~l~~~v~ 342 (474)
++++.+.++++-|++.+|.+.+.+.-...+.+.+++. ..|.+++++.|...+.+.. ....+...++..+...+|.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 4566789999999999999999888888887777631 3467787888875544421 2233344444444446788
Q ss_pred EecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeee--eCCceeeecCCC
Q 011954 343 FVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVV--NGTTGLLHPTGK 410 (474)
Q Consensus 343 ~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~--~~~~G~l~~~~d 410 (474)
|+... +-...++.+|||-.+.|+...|..|.+=|-||.-|.+-|+|--|...|+.+ +++||+++....
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 88853 444557899999999887778999999999999999999999999999886 889999998765
No 137
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.19 E-value=0.00065 Score=62.24 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=85.5
Q ss_pred CCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 267 RDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 267 ~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+++..+++.+|. -.-|-+++..++ .....+.+. ...-++|.|...+ ++..+++.....-.++|.+..+
T Consensus 217 pE~~~Ilvs~GG--G~dG~eLi~~~l-~A~~~l~~l----~~~~~ivtGP~MP-----~~~r~~l~~~A~~~p~i~I~~f 284 (400)
T COG4671 217 PEGFDILVSVGG--GADGAELIETAL-AAAQLLAGL----NHKWLIVTGPFMP-----EAQRQKLLASAPKRPHISIFEF 284 (400)
T ss_pred CccceEEEecCC--ChhhHHHHHHHH-HHhhhCCCC----CcceEEEeCCCCC-----HHHHHHHHHhcccCCCeEEEEh
Confidence 355677777874 344544443333 332322110 1124667777653 3333444444433468999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcce-e-ee------eCCceeeecCCCCChHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTME-I-VV------NGTTGLLHPTGKEGVTPLAN 418 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e-~-v~------~~~~G~l~~~~d~~~~~la~ 418 (474)
.+++..++..|+..|. -+.=+++.|-+++|||.+.-.....+| - +. =|-...+.+.+ -.++.|++
T Consensus 285 ~~~~~~ll~gA~~vVS------m~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~-lt~~~La~ 357 (400)
T COG4671 285 RNDFESLLAGARLVVS------MGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPEN-LTPQNLAD 357 (400)
T ss_pred hhhHHHHHHhhheeee------cccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCccc-CChHHHHH
Confidence 9999999999999993 333468999999999998776554333 1 10 02223334333 23889999
Q ss_pred HHHHHhhC
Q 011954 419 NIVKLATH 426 (474)
Q Consensus 419 ~i~~ll~~ 426 (474)
+|..+++.
T Consensus 358 al~~~l~~ 365 (400)
T COG4671 358 ALKAALAR 365 (400)
T ss_pred HHHhcccC
Confidence 99988873
No 138
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.13 E-value=0.00063 Score=66.56 Aligned_cols=238 Identities=15% Similarity=0.152 Sum_probs=154.5
Q ss_pred ccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCc--cccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEec
Q 011954 200 LPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSK--DLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIIN 277 (474)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vg 277 (474)
...+|.+++++.+..-.+.....+.+-. .+....|...-.. +...|... ..|..+++|++.+++..+.
T Consensus 697 a~~mDYiITDs~tsPl~~a~~ysEkLv~-lPh~ffi~d~~qk~~~~~dpn~k---------P~r~~y~Lp~d~vvf~~FN 766 (966)
T KOG4626|consen 697 ATFMDYIITDSVTSPLELAQQYSEKLVY-LPHCFFIGDHKQKNQDVLDPNNK---------PTRSQYGLPEDAVVFCNFN 766 (966)
T ss_pred CceeeEEeecccCChHHHHHHHHHHHhh-CCceEEecCcccccccccCCCCC---------CCCCCCCCCCCeEEEeech
Confidence 3567778888877666665555555432 2335555543321 11222211 2477899999988887777
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecC--CCChHHHH
Q 011954 278 SVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNK--TLTVSPYL 354 (474)
Q Consensus 278 rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~--~~~~~~~~ 354 (474)
.+ .|=-...++.+.++++ +.|+-.|++.--.. --+..++..+.++|++ ++|.|..- .++=..-+
T Consensus 767 qL--yKidP~~l~~W~~ILk-------~VPnS~LwllrfPa----~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 767 QL--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred hh--hcCCHHHHHHHHHHHH-------hCCcceeEEEeccc----cchHHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 65 4555678888888877 45888887766432 1357889999999986 56777662 25555667
Q ss_pred hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcce-----eeeeCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 011954 355 ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTME-----IVVNGTTGLLHPTGKEGVTPLANNIVKLATHVER 429 (474)
Q Consensus 355 ~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e-----~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 429 (474)
+.+||++-+-. ..| -.+-+|.+.+|+|+|+-...-... .+.--..|-++..+ -++..+.-.+|-.|.+.
T Consensus 834 ~LaDv~LDTpl--cnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~---~eEY~~iaV~Latd~~~ 907 (966)
T KOG4626|consen 834 QLADVCLDTPL--CNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKN---REEYVQIAVRLATDKEY 907 (966)
T ss_pred hhhhhcccCcC--cCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhh---HHHHHHHHHHhhcCHHH
Confidence 88999997654 222 346789999999999753221110 00011234344333 57888888888889998
Q ss_pred HHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 430 RLTMGKKGYERVK--DRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 430 ~~~~~~~~~~~~~--~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
.+.++..-+.... .-|+-..++..++++|.+.+++--
T Consensus 908 L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~ 946 (966)
T KOG4626|consen 908 LKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYC 946 (966)
T ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhc
Confidence 8888776555432 349999999999999999887543
No 139
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.98 E-value=3e-06 Score=72.12 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=65.7
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc--------ceeeeeCCceeeecCCC
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT--------MEIVVNGTTGLLHPTGK 410 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d 410 (474)
.+|.+.++.+++.++|+.||++| .-+.+.++.|++++|+|.|.-...+. ...+.+...|......+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvI------s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVI------SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEE------ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEE------eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 68999999999999999999999 44456899999999999988765551 11233334566665554
Q ss_pred CChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 411 EGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
.+++.|.++|..++.++.....|.+++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 347889999999999988777765543
No 140
>PRK14986 glycogen phosphorylase; Provisional
Probab=97.94 E-value=0.00019 Score=73.88 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=111.3
Q ss_pred HHhcC--CCCCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc--
Q 011954 261 RESLG--VRDDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK-- 335 (474)
Q Consensus 261 r~~~~--~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~-- 335 (474)
+++.| ++++.+.++++-|+..+|.+.+ ++..+.++.+...+.+.+..+.++++.|...+.+. ..+.+.+++...
T Consensus 532 ~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIk~I~~va~ 610 (815)
T PRK14986 532 AQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYY-MAKHIIHLINDVAK 610 (815)
T ss_pred HHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 5667788999999999999999 88887777544332111113588888887655543 334444443322
Q ss_pred ------CCCC--eEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCce
Q 011954 336 ------KIQD--HVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTTG 403 (474)
Q Consensus 336 ------~l~~--~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (474)
.+.+ +|.|+... +--..++.+||+....|+...|..|..=+=||.-|.+.++|--|...|+.++ ++||
T Consensus 611 ~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~ 690 (815)
T PRK14986 611 VINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENI 690 (815)
T ss_pred HhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcE
Confidence 2233 68888853 4455678999999998887789999999999999999999999999998865 7899
Q ss_pred eeecCCCCChHHHHHH
Q 011954 404 LLHPTGKEGVTPLANN 419 (474)
Q Consensus 404 ~l~~~~d~~~~~la~~ 419 (474)
+++... ++++.+.
T Consensus 691 ~~fG~~---~~ev~~~ 703 (815)
T PRK14986 691 FIFGNT---AEEVEAL 703 (815)
T ss_pred EEeCCC---HHHHHHH
Confidence 999765 4555443
No 141
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.93 E-value=2.5e-05 Score=70.65 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=32.5
Q ss_pred EEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 76 kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|||+++.+..| ||...++..|+++|+++||+|.|+++..+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~ 44 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYG 44 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-TH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccch
Confidence 79999999766 78899999999999999999999998763
No 142
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.89 E-value=0.00028 Score=70.94 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=90.8
Q ss_pred CCEEEEEecccccC-----cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEE
Q 011954 269 DDLLFAIINSVSRG-----KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHF 343 (474)
Q Consensus 269 ~~~~i~~vgrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~ 343 (474)
+..+++..|..... +-...+++|++++ + .++++..++. ... .++++||.+
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l-----------~-~~viw~~~~~-----~~~--------~~~p~Nv~i 350 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL-----------P-YNVLWKYDGE-----VEA--------INLPANVLT 350 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC-----------C-CeEEEEECCC-----cCc--------ccCCCceEE
Confidence 34777778886532 2234445555433 3 4666655432 111 234679999
Q ss_pred ecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHH
Q 011954 344 VNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLA 417 (474)
Q Consensus 344 ~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la 417 (474)
.++.. -.+++ ..+++|| .-|...++.||+.+|+|+|+-...+ ....++..+.|...+..+-+.+++.
T Consensus 351 ~~w~P-q~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 351 QKWFP-QRAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLV 423 (507)
T ss_pred ecCCC-HHHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHH
Confidence 99863 35677 5689999 4555679999999999999986543 2223344557877766543479999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHH
Q 011954 418 NNIVKLATHVERRLTMGKKGYER 440 (474)
Q Consensus 418 ~~i~~ll~~~~~~~~~~~~~~~~ 440 (474)
++|.++++|+..+++..+-+...
T Consensus 424 ~ai~~vl~~~~y~~~a~~ls~~~ 446 (507)
T PHA03392 424 LAIVDVIENPKYRKNLKELRHLI 446 (507)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999987666655544443
No 143
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.82 E-value=0.0011 Score=67.55 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=90.7
Q ss_pred HHHhcC--CCCCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc-
Q 011954 260 VRESLG--VRDDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK- 335 (474)
Q Consensus 260 ~r~~~~--~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~- 335 (474)
+++..+ ++++.+..+++-|+..+|...+ ++..+..+.+....-+.+..++++++.|...+.+. ..+++.+++...
T Consensus 432 i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~-~gK~iIk~I~~va 510 (713)
T PF00343_consen 432 IKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDY-MGKEIIKLINNVA 510 (713)
T ss_dssp HHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-H-HHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHH
Confidence 344444 4677788899999999999888 45555555332222111234688999998654443 344444444322
Q ss_pred -------CCCC--eEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCc
Q 011954 336 -------KIQD--HVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTT 402 (474)
Q Consensus 336 -------~l~~--~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~ 402 (474)
.+.+ +|.|+... +--..++.++||-...|+...|..|..-+=||.-|.+.+++--|...|+.+. ++|
T Consensus 511 ~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN 590 (713)
T PF00343_consen 511 EVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEEN 590 (713)
T ss_dssp HHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGG
T ss_pred HHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCc
Confidence 2333 78999853 4455678999999998877789999999999999999999998988887642 457
Q ss_pred eeeecC
Q 011954 403 GLLHPT 408 (474)
Q Consensus 403 G~l~~~ 408 (474)
.++|-.
T Consensus 591 ~fiFG~ 596 (713)
T PF00343_consen 591 IFIFGL 596 (713)
T ss_dssp SEEES-
T ss_pred EEEcCC
Confidence 777754
No 144
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.71 E-value=0.00029 Score=72.43 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=112.5
Q ss_pred HHHhcC--CCCCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC
Q 011954 260 VRESLG--VRDDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKK 336 (474)
Q Consensus 260 ~r~~~~--~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~ 336 (474)
++++.| ++++.+..+++-|+..+|.+.+ ++..+.++.+...+......+.++++.|...+... ..+.+.+++....
T Consensus 515 i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va 593 (794)
T TIGR02093 515 IKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSVA 593 (794)
T ss_pred HHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHHH
Confidence 344555 4567788889999999999999 78877777544332111112568888887655443 4455555554433
Q ss_pred --------CCC--eEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCc
Q 011954 337 --------IQD--HVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTT 402 (474)
Q Consensus 337 --------l~~--~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~ 402 (474)
+.+ +|.|+.. ++--..++.+||+....|+...|..|..=+=+|.-|.+.++|--|...|+.++ ++|
T Consensus 594 ~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN 673 (794)
T TIGR02093 594 EVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAEN 673 (794)
T ss_pred HHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCccc
Confidence 334 6888885 34556678999999998887789999999999999999999999998888766 789
Q ss_pred eeeecCCCCChHHHHHH
Q 011954 403 GLLHPTGKEGVTPLANN 419 (474)
Q Consensus 403 G~l~~~~d~~~~~la~~ 419 (474)
+++|-.. .+++.+.
T Consensus 674 ~fiFG~~---~~ev~~~ 687 (794)
T TIGR02093 674 IFIFGLT---VEEVEAL 687 (794)
T ss_pred EEEcCCC---HHHHHHH
Confidence 9999765 4555543
No 145
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.66 E-value=0.00046 Score=70.90 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=106.1
Q ss_pred HHhcC--CCCCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC-
Q 011954 261 RESLG--VRDDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKK- 336 (474)
Q Consensus 261 r~~~~--~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~- 336 (474)
+++.| ++++.+.++++-|+..+|.+.+ ++..+.++.+...+......+.++++.|...+.+. ..+.+.+++....
T Consensus 518 ~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 596 (798)
T PRK14985 518 KQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAE 596 (798)
T ss_pred HHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHH
Confidence 34444 4667788899999999999999 88887777544322110113478888887655443 3444444443322
Q ss_pred -------CCC--eEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCce
Q 011954 337 -------IQD--HVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTTG 403 (474)
Q Consensus 337 -------l~~--~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (474)
+.+ +|.|+... +--..++.+||+....|+...|..|..=+=+|.-|.+.++|--|...|+.++ ++||
T Consensus 597 ~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~ 676 (798)
T PRK14985 597 VINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENI 676 (798)
T ss_pred HhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcE
Confidence 223 68888853 4456678999999998877789999999999999999999999988888754 6788
Q ss_pred eeecCC
Q 011954 404 LLHPTG 409 (474)
Q Consensus 404 ~l~~~~ 409 (474)
+++-..
T Consensus 677 f~fG~~ 682 (798)
T PRK14985 677 FIFGHT 682 (798)
T ss_pred EEeCCC
Confidence 888654
No 146
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.63 E-value=0.00054 Score=70.71 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=110.2
Q ss_pred HHhcC--CCCCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC-
Q 011954 261 RESLG--VRDDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKK- 336 (474)
Q Consensus 261 r~~~~--~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~- 336 (474)
++..| ++++.+..+++-|+..+|.+.+ ++..+.++.+...+......+.++++.|...+... ..+.+.+++....
T Consensus 519 ~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 597 (797)
T cd04300 519 KKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVAD 597 (797)
T ss_pred HHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4677788999999999999999 77777766544322111113478888887655443 3444444443321
Q ss_pred -------CCC--eEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCce
Q 011954 337 -------IQD--HVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTTG 403 (474)
Q Consensus 337 -------l~~--~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (474)
+.+ +|.|+.. ++--..++.+||+-...|+...|..|..=|=+|.-|.+.++|--|...|+.++ ++|+
T Consensus 598 ~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~ 677 (797)
T cd04300 598 VVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENI 677 (797)
T ss_pred HhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcE
Confidence 233 6888885 34556678999999998887789999999999999999999999998888765 7899
Q ss_pred eeecCCCCChHHHHH
Q 011954 404 LLHPTGKEGVTPLAN 418 (474)
Q Consensus 404 ~l~~~~d~~~~~la~ 418 (474)
++|-.. ++++.+
T Consensus 678 fiFG~~---~~ev~~ 689 (797)
T cd04300 678 FIFGLT---AEEVEA 689 (797)
T ss_pred EEeCCC---HHHHHH
Confidence 999765 455443
No 147
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.041 Score=52.49 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCEEEEEec-ccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 269 DDLLFAIIN-SVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 269 ~~~~i~~vg-rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
.+.+++..| .-...|++. .+-++++.+.+.+ ...+++++|+. +..+..+++.+.++. .+.+.|..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp--~e~~~~l~~~l~~-----~~~~Vvl~g~~-----~e~e~~~~i~~~~~~--~~~l~~k~ 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWP--LEHYAELAELLIA-----KGYQVVLFGGP-----DEEERAEEIAKGLPN--AVILAGKT 240 (334)
T ss_pred CCeEEEeccccccccCCCC--HHHHHHHHHHHHH-----CCCEEEEecCh-----HHHHHHHHHHHhcCC--ccccCCCC
Confidence 467777788 666777664 3344444444444 34889999986 256666666666642 23366753
Q ss_pred --CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 348 --LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 348 --~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.++..++..||++|.+.. |. +==|.|.|+|+|+--
T Consensus 241 sL~e~~~li~~a~l~I~~DS------g~-~HlAaA~~~P~I~iy 277 (334)
T COG0859 241 SLEELAALIAGADLVIGNDS------GP-MHLAAALGTPTIALY 277 (334)
T ss_pred CHHHHHHHHhcCCEEEccCC------hH-HHHHHHcCCCEEEEE
Confidence 889999999999996654 32 334889999999864
No 148
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.028 Score=58.29 Aligned_cols=192 Identities=14% Similarity=0.056 Sum_probs=132.0
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEE
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMH 310 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (474)
.+..+|-|+|...+..............+++..+ .++.+++.+-|+...||+..=+.++.++++...+. .+.+.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~---~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEW---IDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChhh---hceEE
Confidence 4566778888887765544433333355666655 46678888999999999999999999988755432 24566
Q ss_pred EEEEcCCCCcCchHHHHHHHHHH----H----cCC--CCeEEEecC---CCChHHHHhcCCEEEEcCCCCCCCCchHHHH
Q 011954 311 AVVVGSDMNAQTKFETELRNFVA----E----KKI--QDHVHFVNK---TLTVSPYLASIDVLVQNSQARGECFGRITIE 377 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~----~----~~l--~~~v~~~g~---~~~~~~~~~~adv~v~ps~~~~E~~~~~~~E 377 (474)
++.+..+...+.+..++++..+. + .+- ...|+++-. ..++.+++..+|+++..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 66666554333322223333222 1 111 123444432 3678899999999999998 9999999999
Q ss_pred HHhcC----CCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 011954 378 AMAFQ----LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMG 434 (474)
Q Consensus 378 Ama~G----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 434 (474)
+.+|. .+.|.+..-|..+.. +....++.+.+ .++++.+|...+..++.-.+++
T Consensus 392 ~i~~~~~~~~~lVlsef~G~~~tl--~d~aivvnpw~--~~~~~~~i~~al~~s~~e~~~r 448 (732)
T KOG1050|consen 392 YILCQENKKSVLVLSEFIGDDTTL--EDAAIVVNPWD--GDEFAILISKALTMSDEERELR 448 (732)
T ss_pred HHHhhcccCCceEEeeeccccccc--cccCEEECCcc--hHHHHHHHHHHhhcCHHHHhhc
Confidence 99884 678888888887776 34567888888 8999999999998555444443
No 149
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.07 E-value=0.042 Score=51.00 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=58.4
Q ss_pred EEEEecccccCcc--hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--C
Q 011954 272 LFAIINSVSRGKG--QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--T 347 (474)
Q Consensus 272 ~i~~vgrl~~~Kg--~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~ 347 (474)
+++..|.-.+.|. .+.+.+.+..+.+ .+++++++|+.. ..+..+++.+..+....+.+.|. .
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~~-----e~~~~~~i~~~~~~~~~~~~~~~~~l 189 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGPA-----ERELAEEIAAALGGPRVVNLAGKTSL 189 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEechh-----hHHHHHHHHHhcCCCccccCcCCCCH
Confidence 3334444344443 3455555555543 368889998753 34445555554432234555664 3
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.++..+++.||++|.+.. |..- -|.+.|+|+|+--
T Consensus 190 ~e~~~li~~~~l~I~~Ds------g~~H-lA~a~~~p~i~l~ 224 (279)
T cd03789 190 RELAALLARADLVVTNDS------GPMH-LAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHhCCEEEeeCC------HHHH-HHHHcCCCEEEEE
Confidence 788999999999996542 3333 3569999998764
No 150
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.04 E-value=0.083 Score=50.84 Aligned_cols=102 Identities=8% Similarity=-0.014 Sum_probs=61.9
Q ss_pred CCEEEEEecccccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 269 DDLLFAIINSVSRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
++++++..|.-.+.|.+. ...+.++.+.+ .+.+++++|+..+. ..+..++.++.......+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~---------~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA---------RGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCC
Confidence 467777888766777665 44444444422 46788888764211 12223444443332234556675
Q ss_pred --CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 347 --TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 347 --~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
..++..+++.||++|-.-. | .+==|.|.|+|+|+--
T Consensus 251 ~sL~el~ali~~a~l~v~nDS------G-p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS------A-PAHIAAAVNTPLICLF 288 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEEE
Confidence 3789999999999996543 2 2334778999999753
No 151
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.04 E-value=0.071 Score=50.93 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=66.4
Q ss_pred HHHHHhcCCCC-CCEEEEEecc-cccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH
Q 011954 258 EHVRESLGVRD-DDLLFAIINS-VSRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA 333 (474)
Q Consensus 258 ~~~r~~~~~~~-~~~~i~~vgr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~ 333 (474)
+.+...++++. +.++++..|. ..+.|.+. ...+.+..+.+ .+.+++++|+.. ..+..+++.+
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~~-----e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSAK-----DHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEEChh-----hHHHHHHHHH
Confidence 44566677654 4566666665 34667554 55555544432 357888998753 3333444443
Q ss_pred HcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 334 EKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 334 ~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
..+ ...+.+.|. ..++..+++.||++|-.-. | .+==|.|.|+|+|+-
T Consensus 228 ~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS------G-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS------G-LMHVAAALNRPLVAL 276 (334)
T ss_pred hCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC------H-HHHHHHHcCCCEEEE
Confidence 332 122335674 3789999999999996543 2 233478999999975
No 152
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.94 E-value=0.066 Score=51.47 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred HHHHHhcCCC-CCCEEEEEeccc-ccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH
Q 011954 258 EHVRESLGVR-DDDLLFAIINSV-SRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA 333 (474)
Q Consensus 258 ~~~r~~~~~~-~~~~~i~~vgrl-~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~ 333 (474)
+.+.+.+++. ++.++++..|.- .+.|.+. .+.+.++.+.+ .+++++++|+.. ..+..++..+
T Consensus 168 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~~-----e~~~~~~i~~ 233 (348)
T PRK10916 168 SETCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSAK-----DHEAGNEILA 233 (348)
T ss_pred HHHHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCHH-----hHHHHHHHHH
Confidence 3345555553 445666677653 3567554 34444444422 467888888753 3444444444
Q ss_pred HcCCC--Ce-EEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 334 EKKIQ--DH-VHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 334 ~~~l~--~~-v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
..+.. .+ +.+.|.. .++..+++.||++|-.-. | .+==|.|.|+|+|+-
T Consensus 234 ~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT------G-p~HlAaA~g~P~val 286 (348)
T PRK10916 234 ALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVAL 286 (348)
T ss_pred hcccccccceeeccCCCCHHHHHHHHHhCCEEEecCC------h-HHHHHHHhCCCEEEE
Confidence 43311 12 4555643 788899999999996543 2 233488999999975
No 153
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.82 E-value=0.0076 Score=61.15 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
.+..+++..|.+.. .-.+..++++.+..+ +.|+ ++++.-.+. ....+ ++|+.+..+.
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~-----~~~~l---------~~n~~~~~W~ 331 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGE-----PPENL---------PKNVLIVKWL 331 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCS-----HGCHH---------HTTEEEESS-
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-ccccccccc-----ccccc---------cceEEEeccc
Confidence 44577777888753 233333444443333 2255 566554442 11111 2578888876
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
.+ .++++...+-++=+ -|.-.++.||+.+|+|+|+-..-| ....+++...|...+..+-+.+++.++|.++
T Consensus 332 PQ-~~lL~hp~v~~fit----HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 332 PQ-NDLLAHPRVKLFIT----HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREV 406 (500)
T ss_dssp -H-HHHHTSTTEEEEEE----S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHH
T ss_pred cc-hhhhhcccceeeee----ccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHH
Confidence 44 46776655544334 345679999999999999986543 2333445557777776554479999999999
Q ss_pred hhCHHHHHHHHH
Q 011954 424 ATHVERRLTMGK 435 (474)
Q Consensus 424 l~~~~~~~~~~~ 435 (474)
++|+..+++..+
T Consensus 407 l~~~~y~~~a~~ 418 (500)
T PF00201_consen 407 LENPSYKENAKR 418 (500)
T ss_dssp HHSHHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 999865544433
No 154
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.81 E-value=0.34 Score=45.90 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=60.5
Q ss_pred CCCEEEEEecccccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec
Q 011954 268 DDDLLFAIINSVSRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN 345 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (474)
+++.+++..|.-.+.|.+. ...+.+..+.+ .+.+++++|+++ +..+..+++.+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 3556777777656677663 45555544432 357788876553 23344455544433 234567
Q ss_pred C--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 346 K--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 346 ~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
. ..++..+++.||++|-+-. .+ +==|.|.|+|+|+-
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS-----gp--~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT-----GL--THLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC-----hH--HHHHHHcCCCEEEE
Confidence 4 3778889999999996543 22 33477889999975
No 155
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.78 E-value=0.29 Score=46.41 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=57.9
Q ss_pred CCCEEEEEecccccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec
Q 011954 268 DDDLLFAIINSVSRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN 345 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (474)
.++++++..|.-...|.+. ...+.+..+.+ .+.++++.|+++ +..+..+++.+.. ..+.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 3455544555444556554 44444444422 356777764343 1333334433322 3466677
Q ss_pred CC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 346 KT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 346 ~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.. .++..+++.||++|-... | .+==|.|+|+|+|+-=
T Consensus 241 ~~sL~elaali~~a~l~I~nDS------G-p~HlA~A~g~p~valf 279 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT------G-LSHLTAALDRPNITLY 279 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC------c-HHHHHHHhCCCEEEEE
Confidence 53 788899999999996543 2 3445889999999863
No 156
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.77 E-value=0.044 Score=54.69 Aligned_cols=96 Identities=18% Similarity=0.065 Sum_probs=58.4
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeC-CceeeecCC----
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNG-TTGLLHPTG---- 409 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~---- 409 (474)
+++.+.++.. -.+++...++-.+-+ -|.-++++||+++|+|+|+-...+ ....+.+. ..|+-+...
T Consensus 323 ~~~~v~~w~p-Q~~iL~h~~v~~fvt----HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 323 DMGLVVPWCD-QLKVLCHSSVGGFWT----HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred CCEEEeccCC-HHHHhccCccceEEe----cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 4677777753 345777777633333 344569999999999999976543 22223331 345555311
Q ss_pred -CCChHHHHHHHHHHhhCH-HHHHHHHHHHHH
Q 011954 410 -KEGVTPLANNIVKLATHV-ERRLTMGKKGYE 439 (474)
Q Consensus 410 -d~~~~~la~~i~~ll~~~-~~~~~~~~~~~~ 439 (474)
..+.+++++++.+++.++ +..++|++++.+
T Consensus 398 ~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred CcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 112799999999999864 334445444443
No 157
>PLN02670 transferase, transferring glycosyl groups
Probab=96.74 E-value=0.044 Score=54.50 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=66.9
Q ss_pred EEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCC----CC
Q 011954 341 VHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGK----EG 412 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d----~~ 412 (474)
+.+.++..+ .++++...+-.+-++ +.-++++||+++|+|+|+-...+ ....+..-..|+.++..+ -+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 666677643 457766666333343 34469999999999999975432 222333345666664211 12
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHH
Q 011954 413 VTPLANNIVKLATHVERRLTMGKKGYER---VKDRFLEHHMSQRIALVLREV 461 (474)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~~~~~ 461 (474)
.+++.++|.+++.+++ -+++++++++. +.+.=..+.+++.+++.+.+.
T Consensus 416 ~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 7999999999997642 23344444433 333334444555554444443
No 158
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.64 E-value=0.12 Score=46.09 Aligned_cols=312 Identities=12% Similarity=0.063 Sum_probs=140.8
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcH-HHHhhhcCCCEEEEcccchhhHH
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGE-KAINTALNADLVVLNTAVAGKWL 165 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~DiV~~~~~~~~~~~ 165 (474)
.|+.+...++-....++|+++.++.........+ -........+..+..... ..+..-..+||+..++..+...-
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~----dsH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vq 76 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRP----DSHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQ 76 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTT----TSSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCc----cccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHH
Confidence 3677888888889999999999998543221110 011222233333322222 23334468999999874332211
Q ss_pred hH---Hhhhcccccc--cceeeeeeccccccch--hhhhhcccccccccccccccHHHHHHhHH-HHhcCC---CCCeEE
Q 011954 166 DG---VLKDKVSQVL--PKVLWWIHEMRGHYFK--LEYVKHLPFVAGAMIDSYTTAEYWKNRTR-ERLGIR---MPETYV 234 (474)
Q Consensus 166 ~~---~~~~~~~~~~--~~~v~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~---~~ki~v 234 (474)
.. .....+..+. .+++...|+....... ..+...++.+|.+.+.+...- +...+. .-++-. .+++.-
T Consensus 77 E~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g~--f~kv~m~~l~Ps~~~l~~~i~~ 154 (355)
T PF11440_consen 77 EAIINNYEKIIKKIKPSIKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNGW--FSKVLMKELLPSKVSLFDRIKK 154 (355)
T ss_dssp HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTSH--HHHTHHHHHS-SS--SSS----
T ss_pred HHHHHHHHHHHHhccccceeEEEeeccceeeccccccHHHHHHhhcEEEeccccch--HHHHHHHhhccccCchhhhhhh
Confidence 11 1122222232 2446677765322221 123344556666666554321 111111 111111 123333
Q ss_pred EeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEE---EEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEE
Q 011954 235 VHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLF---AIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHA 311 (474)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i---~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l 311 (474)
.|... .|++..+ ....|+.+-.+...+.. +|+||.+..||...+++...+.++ .++..-
T Consensus 155 ~p~v~---nfqpp~~-------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK--------~~~~~t 216 (355)
T PF11440_consen 155 FPMVF---NFQPPMD-------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK--------PAGFKT 216 (355)
T ss_dssp ---EE---E----B--------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT--------TTT-EE
T ss_pred cceee---ecCCccc-------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC--------CcchhH
Confidence 33221 1222111 23445555544444555 799999999999999998887653 367888
Q ss_pred EEEcCCCCcCchHHHHHHH----------HHHHcCC--CCeEEEecC-C-CChHHHHhcCCEEEEcCCC----CCCCCch
Q 011954 312 VVVGSDMNAQTKFETELRN----------FVAEKKI--QDHVHFVNK-T-LTVSPYLASIDVLVQNSQA----RGECFGR 373 (474)
Q Consensus 312 ~i~G~g~~~~~~~~~~l~~----------~~~~~~l--~~~v~~~g~-~-~~~~~~~~~adv~v~ps~~----~~E~~~~ 373 (474)
++-|-.. ++....-+.. .+.+..+ ...+-++|. + +++.+.++.+-..+.-+.. -.+..-.
T Consensus 217 ~~~Gier--S~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEY 294 (355)
T PF11440_consen 217 IMEGIER--SPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEY 294 (355)
T ss_dssp EEE---S--STHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---H
T ss_pred Hhhhhhc--CCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhh
Confidence 8888531 1211111111 0001111 123666674 3 7788888887776654431 0234667
Q ss_pred HHHHHHhcCC-CEEEcCCCCcce-------eeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 374 ITIEAMAFQL-PVLGTAAGGTME-------IVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 374 ~~~EAma~G~-PvI~s~~~g~~e-------~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+-+|..|||. ||.-...|..-- ++......+.++..| .++-.+.|.++.++
T Consensus 295 t~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~ 353 (355)
T PF11440_consen 295 TQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANN 353 (355)
T ss_dssp HHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-
T ss_pred heeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccch--HHHHHHHHHHHhcc
Confidence 8999999996 676665543211 233344566777777 88888888877665
No 159
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.58 E-value=0.39 Score=44.98 Aligned_cols=87 Identities=10% Similarity=-0.044 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcC
Q 011954 285 QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNS 364 (474)
Q Consensus 285 ~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps 364 (474)
.+.+.+++..+.+. .+.+++++.-..+ ......+++...+.-...+......+++..+++.||++|-..
T Consensus 190 ~~~l~~~l~~l~~~--------~g~~v~~i~~~~~---~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~R 258 (298)
T TIGR03609 190 LLRLLRALDRLQRD--------TGAFVLFLPFQQP---QDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMR 258 (298)
T ss_pred HHHHHHHHHHHHHh--------hCCeEEEEeCCcc---hhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEec
Confidence 44555555555431 2455555443221 133444555555543334432223467888999999888655
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 365 QARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 365 ~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
. -.++=|+.+|+|+|+-.
T Consensus 259 l-------H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 259 L-------HALILAAAAGVPFVALS 276 (298)
T ss_pred h-------HHHHHHHHcCCCEEEee
Confidence 4 26777999999999764
No 160
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.56 E-value=0.11 Score=52.16 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=52.7
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeee-CCceeee-------
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVN-GTTGLLH------- 406 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~------- 406 (474)
.++++.++..+ .+++..+++-++-++ |.-++++||+++|+|+|+-...+ ....+.+ -..|+-+
T Consensus 345 ~g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 419 (482)
T PLN03007 345 KGLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVK 419 (482)
T ss_pred CCEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccc
Confidence 57888888744 578888877333343 33469999999999999976432 1111111 1223222
Q ss_pred -cCCCCChHHHHHHHHHHhhCH
Q 011954 407 -PTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 407 -~~~d~~~~~la~~i~~ll~~~ 427 (474)
+.+..+.+++++++++++.++
T Consensus 420 ~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 420 VKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccCcccHHHHHHHHHHHhcCc
Confidence 111112889999999999875
No 161
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.51 E-value=0.045 Score=54.22 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=56.3
Q ss_pred CeEEEecCCCChHHHHhcCCE--EEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeC-CceeeecCCCC
Q 011954 339 DHVHFVNKTLTVSPYLASIDV--LVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNG-TTGLLHPTGKE 411 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv--~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~ 411 (474)
++..+.++..+ .+++...++ || + -+.-++++||+++|+|+|+-...+ ....+.+. +.|+-+. ++.
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fv--t----H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~ 395 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFW--S----HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDL 395 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeee--e----cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-Ccc
Confidence 46666677533 346766555 65 3 233459999999999999875432 22223222 4666553 222
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGY 438 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~ 438 (474)
+.+++++++.+++.+++ -+++.++++
T Consensus 396 ~~~~v~~av~~lm~~~~-~~~~r~~a~ 421 (451)
T PLN02410 396 DRGAVERAVKRLMVEEE-GEEMRKRAI 421 (451)
T ss_pred cHHHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 37899999999998654 334444444
No 162
>PLN02562 UDP-glycosyltransferase
Probab=96.37 E-value=0.064 Score=53.24 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=57.7
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeee-CCceeeecCCCCCh
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVN-GTTGLLHPTGKEGV 413 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d~~~ 413 (474)
+++.+.++. .-.++++..++-++-++ |.-.+++||+.+|+|+|+-...+ ....+.+ -..|+-+..-+ .
T Consensus 328 ~~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~--~ 400 (448)
T PLN02562 328 KQGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFG--Q 400 (448)
T ss_pred cCEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCC--H
Confidence 577777876 33567777665444343 33469999999999999875432 2233332 24555554344 8
Q ss_pred HHHHHHHHHHhhCHHHHHHH
Q 011954 414 TPLANNIVKLATHVERRLTM 433 (474)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~ 433 (474)
+++++++.+++.+++.+++.
T Consensus 401 ~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 401 KEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 99999999999887655443
No 163
>PLN03004 UDP-glycosyltransferase
Probab=96.11 E-value=0.079 Score=52.41 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=57.4
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC----Ccceeeee-CCceeeecCC---C
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG----GTMEIVVN-GTTGLLHPTG---K 410 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~----g~~e~v~~-~~~G~l~~~~---d 410 (474)
.++.+.++..+ .++++.+++-.+-++ +.-++++||+++|+|+|+-... .....+.+ -+.|+.++.+ .
T Consensus 334 ~g~~v~~W~PQ-~~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQ-VPVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCH-HHHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 46888887644 458888888444343 3446999999999999997543 22333332 2567666422 1
Q ss_pred CChHHHHHHHHHHhhCHH
Q 011954 411 EGVTPLANNIVKLATHVE 428 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~~~ 428 (474)
.+.++++++|.+++++++
T Consensus 409 ~~~e~l~~av~~vm~~~~ 426 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECP 426 (451)
T ss_pred cCHHHHHHHHHHHhcCHH
Confidence 138999999999998754
No 164
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.92 E-value=0.79 Score=45.68 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=93.0
Q ss_pred eccc-ccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec--CCCChHH
Q 011954 276 INSV-SRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN--KTLTVSP 352 (474)
Q Consensus 276 vgrl-~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g--~~~~~~~ 352 (474)
-|.- .-+||-+..++++.+. -.++-.|.+... ....+- .-|.=+| ..+++..
T Consensus 283 yGK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~-----~~~~~P---------~~V~NHG~l~~~ef~~ 337 (559)
T PF15024_consen 283 YGKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ-----RPPNVP---------SFVKNHGILSGDEFQQ 337 (559)
T ss_pred EccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC-----CCcccc---------hhhhhcCcCCHHHHHH
Confidence 3443 3367778787777543 456766655432 112222 2333444 3478999
Q ss_pred HHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc---------------ceeee---------eCCceeeecC
Q 011954 353 YLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT---------------MEIVV---------NGTTGLLHPT 408 (474)
Q Consensus 353 ~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~---------------~e~v~---------~~~~G~l~~~ 408 (474)
+++.+.|||-.... .| |-+.+||+|.|+|-|-...... +++-. ..-.-+.++-
T Consensus 338 lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~ 414 (559)
T PF15024_consen 338 LLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDI 414 (559)
T ss_pred HHHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcC
Confidence 99999999965542 44 4589999999999987653211 12110 1123456677
Q ss_pred CCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 409 GKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 409 ~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
+| .+++.+||.+++..+- .-++--.|+-+.|.+++..+++.
T Consensus 415 ~n--~~~v~~Avk~il~~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 415 NN--STEVEAAVKAILATPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred CC--HHHHHHHHHHHHhcCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 77 8999999999987542 12444568999998888777764
No 165
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.82 E-value=0.44 Score=47.74 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=51.6
Q ss_pred CeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeee-eCCceeeecCC--
Q 011954 339 DHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVV-NGTTGLLHPTG-- 409 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~-- 409 (474)
.++++.++..+ .+++.. +++|| .-+.-++++||+++|+|+|+-...+ ....+. .-+.|+-+..+
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFL------THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEE------ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 46777788744 556765 56666 3344569999999999999875432 222222 22456555221
Q ss_pred -CCChHHHHHHHHHHhh-CHH
Q 011954 410 -KEGVTPLANNIVKLAT-HVE 428 (474)
Q Consensus 410 -d~~~~~la~~i~~ll~-~~~ 428 (474)
..+.+++++++.+++. +++
T Consensus 416 ~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 416 TVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CCcCHHHHHHHHHHHhhccHH
Confidence 1126899999999883 444
No 166
>PLN02167 UDP-glycosyltransferase family protein
Probab=95.76 E-value=0.28 Score=49.16 Aligned_cols=81 Identities=14% Similarity=0.030 Sum_probs=49.5
Q ss_pred eEEEecCCCChHHHHhcC--CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cc-eeeeeCCceeeecCC---
Q 011954 340 HVHFVNKTLTVSPYLASI--DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TM-EIVVNGTTGLLHPTG--- 409 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~a--dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~-e~v~~~~~G~l~~~~--- 409 (474)
+..+.++.. -..+++.. +.|| + -+.-++++||+++|+|+|+-...+ .. -++..-+.|+.+...
T Consensus 341 rg~v~~w~P-Q~~iL~h~~vg~fv--t----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWAP-QVEILAHKAIGGFV--S----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccCC-HHHHhcCcccCeEE--e----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 455667753 34567664 4566 2 233358999999999999875432 11 123233456655321
Q ss_pred ----CCChHHHHHHHHHHhhCH
Q 011954 410 ----KEGVTPLANNIVKLATHV 427 (474)
Q Consensus 410 ----d~~~~~la~~i~~ll~~~ 427 (474)
..+.+++++++.+++.++
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcCC
Confidence 112789999999999753
No 167
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=1.4 Score=39.27 Aligned_cols=109 Identities=9% Similarity=0.023 Sum_probs=65.6
Q ss_pred CCCEEEEEecccccCcch--HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHH-cCCCCeEEEe
Q 011954 268 DDDLLFAIINSVSRGKGQ--DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAE-KKIQDHVHFV 344 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~ 344 (474)
...++-++||.-.+.=.. |.+.+....+.+.+.+ ....|++--+-- -.+..+..++. +.-..-+.+-
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~~l~s~~~i~w~ 229 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKNNLNSSPGIVWN 229 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHhccccCceeEeC
Confidence 345777778865543332 4444545555555543 456677766642 34556666665 4333344444
Q ss_pred cC---CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 345 NK---TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 345 g~---~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
+. .+-..+++++||.++.+.- -=.-..||.+.|+||.+.--.
T Consensus 230 ~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 230 NEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVFILEPP 274 (329)
T ss_pred CCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeEEEecC
Confidence 43 1446788999999998753 123467999999999776433
No 168
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=95.62 E-value=2.2 Score=40.79 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC----Ccceee
Q 011954 324 FETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG----GTMEIV 397 (474)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~----g~~e~v 397 (474)
...-.+.++....-..++.+.... +++...++++|+.|-.-. -+++=||+.|+|+|+-... ++.+-+
T Consensus 251 d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p~i~i~Y~~K~~~l~~~~ 323 (385)
T COG2327 251 DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVPAIAIAYDPKVRGLMQDL 323 (385)
T ss_pred hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCCeEEEeecHHHHHHHHHc
Confidence 445555555555544677776643 466778999999985443 2567799999999987644 332222
Q ss_pred eeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHH
Q 011954 398 VNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLT 432 (474)
Q Consensus 398 ~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~ 432 (474)
+-.++..+..+.|.+.+.+...+.+. .++.+++
T Consensus 324 --gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 324 --GLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred --CCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 33445555554447888888877776 4554443
No 169
>PLN02555 limonoid glucosyltransferase
Probab=95.49 E-value=0.53 Score=47.12 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=57.1
Q ss_pred CeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeC-Cceeeec----
Q 011954 339 DHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNG-TTGLLHP---- 407 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~---- 407 (474)
+++.+.++..+ .+++ .++.+|| .-+.-++++||+.+|+|+|+-..-+ ....+.+. +.|+-+.
T Consensus 337 ~~g~v~~W~PQ-~~iL~H~~v~~Fv------tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~ 409 (480)
T PLN02555 337 DKGKIVQWCPQ-EKVLAHPSVACFV------THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEA 409 (480)
T ss_pred CceEEEecCCH-HHHhCCCccCeEE------ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCcc
Confidence 56777787643 4466 4466666 3334569999999999999876432 12222222 4555542
Q ss_pred -CCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 011954 408 -TGKEGVTPLANNIVKLATHVERRLTMGKKGYER 440 (474)
Q Consensus 408 -~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~ 440 (474)
.+.-+.+++++++.+++.+++ .++|++++++.
T Consensus 410 ~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 410 ENKLITREEVAECLLEATVGEK-AAELKQNALKW 442 (480)
T ss_pred ccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHHH
Confidence 111127899999999997643 34455554443
No 170
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=95.47 E-value=0.23 Score=41.04 Aligned_cols=130 Identities=14% Similarity=0.052 Sum_probs=69.4
Q ss_pred CEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
||||++.+++ ||.- ..+..|++.+ .|+++++|...... .-.+......+ ...+.....+|+
T Consensus 1 M~ILlle~y~--ggSHk~~~~~L~~~~---~~~~~lltLP~r~w--------~WRmRg~AL~~-----a~~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY--GGSHKQWADGLAAHS---EHEWTLLTLPARKW--------HWRMRGAALYF-----AQQIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc--ccCHHHHHHHHHHhc---cCCEEEEEcCCCcc--------ccccCCCHHHH-----hhccccccCCCE
Confidence 7899999865 4543 3344444444 48999999654321 11111111111 133444577899
Q ss_pred EEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhh---------hh--hcccccccccccccccHHHHHHhHH
Q 011954 154 VVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLE---------YV--KHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~---------~~--~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
|++.+...-.-+..+.. .+ -.+|.+.++|+..-.|-... +. ...--+|.++.+|....+.+.+.+.
T Consensus 63 l~aTsmldLa~l~gL~p-~l--~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRP-DL--ANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred EEeeccccHHHHHhhcc-CC--CCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 99987543332222222 11 23688888998643222111 11 1113456677777777777665544
Q ss_pred HHh
Q 011954 223 ERL 225 (474)
Q Consensus 223 ~~~ 225 (474)
.-+
T Consensus 140 ~fL 142 (168)
T PF12038_consen 140 SFL 142 (168)
T ss_pred HHH
Confidence 433
No 171
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.45 E-value=0.24 Score=49.08 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=52.2
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeC-CceeeecC--CC-
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNG-TTGLLHPT--GK- 410 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~--~d- 410 (474)
++..+.++..+ .++++..++-++-++ +..++++||+.+|+|+|+-...+ ....+.+. +.|+-+.. .+
T Consensus 327 ~~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 401 (455)
T PLN02152 327 EVGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGL 401 (455)
T ss_pred CCeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCc
Confidence 56677787643 457777776444443 34569999999999999875432 22222221 23444321 11
Q ss_pred CChHHHHHHHHHHhhCH
Q 011954 411 EGVTPLANNIVKLATHV 427 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~~ 427 (474)
.+.+++++++.++++++
T Consensus 402 ~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 402 VERGEIRRCLEAVMEEK 418 (455)
T ss_pred CcHHHHHHHHHHHHhhh
Confidence 12789999999999754
No 172
>PLN02210 UDP-glucosyl transferase
Probab=95.44 E-value=0.38 Score=47.87 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=52.5
Q ss_pred eEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeee-CCceeeecCC----C
Q 011954 340 HVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVN-GTTGLLHPTG----K 410 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~----d 410 (474)
+..+.++..+ .++++.+++-.+-++ +.-++++||+.+|+|+|+-...+ ....+.+ -+.|+.+... .
T Consensus 325 ~g~v~~w~PQ-~~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQ-EKILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCH-HHHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 4445677644 457888874333332 23358999999999999975432 2223333 3466665321 1
Q ss_pred CChHHHHHHHHHHhhCHH
Q 011954 411 EGVTPLANNIVKLATHVE 428 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~~~ 428 (474)
-+.+++++++++++.+++
T Consensus 400 ~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 400 LKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CCHHHHHHHHHHHhcCch
Confidence 127899999999997643
No 173
>PLN02173 UDP-glucosyl transferase family protein
Probab=95.27 E-value=0.46 Score=47.11 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=59.1
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeC-CceeeecCCC---
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNG-TTGLLHPTGK--- 410 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d--- 410 (474)
+++.+.++..+ .++++..++-.+-++ +..++++||+++|+|+|+-..-+ ....+.+. ..|+-+...+
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 57888888643 457777775444443 34579999999999999975432 22233322 3555543211
Q ss_pred -CChHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 011954 411 -EGVTPLANNIVKLATHVERRLTMGKKGYE 439 (474)
Q Consensus 411 -~~~~~la~~i~~ll~~~~~~~~~~~~~~~ 439 (474)
.+.+++++++.+++.+++ .+++++++++
T Consensus 392 ~~~~e~v~~av~~vm~~~~-~~~~r~~a~~ 420 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEK-SKEMKENAGK 420 (449)
T ss_pred cccHHHHHHHHHHHhcCCh-HHHHHHHHHH
Confidence 027999999999997643 2444444443
No 174
>PLN00414 glycosyltransferase family protein
Probab=95.25 E-value=1.3 Score=43.96 Aligned_cols=94 Identities=6% Similarity=-0.044 Sum_probs=58.9
Q ss_pred EEEecCCCChHHHHhcC--CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeee-eCCceeeecCC---C
Q 011954 341 VHFVNKTLTVSPYLASI--DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVV-NGTTGLLHPTG---K 410 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~a--dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~---d 410 (474)
..+.++..+ .+++... +.|| .-+.-++++||+.+|+|+|+-...+ ....+. .-..|+.+..+ .
T Consensus 314 ~vv~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQ-PLILSHPSVGCFV------NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCH-HHHhcCCccceEE------ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 455676533 4567666 4466 3344579999999999999975432 222332 23456555321 1
Q ss_pred CChHHHHHHHHHHhhCH-HHHHHHHHHHHHHH
Q 011954 411 EGVTPLANNIVKLATHV-ERRLTMGKKGYERV 441 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~~-~~~~~~~~~~~~~~ 441 (474)
.+.+++++++.+++.++ +..+++.+++++.-
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 23899999999999754 45666666666543
No 175
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.21 E-value=0.75 Score=41.62 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchH-HHHH-HHHHHHcCCCCeEEEec
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKF-ETEL-RNFVAEKKIQDHVHFVN 345 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~-~~~l-~~~~~~~~l~~~v~~~g 345 (474)
++..+++..|.-.+.|.+.. +-+.+|.+.+.+ ...+++++|+.. . ..+. ....+... .+.+.+.|
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~-----~~~~vvl~g~~~-----~~~~~~~~~~~~~~~-~~~~~~~~ 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPA--EKWAELIERLKE-----RGYRVVLLGGPE-----EQEKEIADQIAAGLQ-NPVINLAG 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--H--HHHHHHHHHHCC-----CT-EEEE--SSH-----HHHHHHHHHHHTTHT-TTTEEETT
T ss_pred cCCeEEEeecCCCccccCCH--HHHHHHHHHHHh-----hCceEEEEccch-----HHHHHHHHHHHHhcc-cceEeecC
Confidence 55677777887677776654 444555454433 337888999863 2 2233 23333222 12577777
Q ss_pred CC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 346 KT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 346 ~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
.. .++..+++.||++|-+-. | .+==|.|.|+|+|+-
T Consensus 171 ~~~l~e~~ali~~a~~~I~~Dt------g-~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRADLVIGNDT------G-PMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSSEEEEESS------H-HHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCCEEEecCC------h-HHHHHHHHhCCEEEE
Confidence 53 778899999999997653 2 334488999999986
No 176
>PLN02208 glycosyltransferase family protein
Probab=95.16 E-value=0.52 Score=46.68 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=59.6
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeee-CCceeeecCCC---
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVN-GTTGLLHPTGK--- 410 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d--- 410 (474)
.++.+.++..+ .++++...+-++-++ +.-++++||+++|+|+|+-..-+ ....+.+ -..|+.+...+
T Consensus 311 ~g~~v~~W~PQ-~~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQ-PLILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCH-HHHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCc
Confidence 45667777544 346766766444443 33469999999999999875432 2222222 34565554321
Q ss_pred CChHHHHHHHHHHhhCH-HHHHHHHHHHHH
Q 011954 411 EGVTPLANNIVKLATHV-ERRLTMGKKGYE 439 (474)
Q Consensus 411 ~~~~~la~~i~~ll~~~-~~~~~~~~~~~~ 439 (474)
-+.++++++|.++++++ +..+++++++++
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 12799999999999764 445555555554
No 177
>PLN02764 glycosyltransferase family protein
Probab=95.02 E-value=0.7 Score=45.78 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=56.2
Q ss_pred eEEEecCCCChHHHHhcCCE--EEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeee-eCCceeeecCC---
Q 011954 340 HVHFVNKTLTVSPYLASIDV--LVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVV-NGTTGLLHPTG--- 409 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~adv--~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~--- 409 (474)
.+.+.++..+ .++++...+ || + -+.-++++||+.+|+|+|+-...+ ....+. .-..|+-+...
T Consensus 318 G~v~~~W~PQ-~~vL~h~~v~~Fv--t----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~ 390 (453)
T PLN02764 318 GVVWGGWVQQ-PLILSHPSVGCFV--S----HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETG 390 (453)
T ss_pred CcEEeCCCCH-HHHhcCcccCeEE--e----cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCC
Confidence 3555566533 346665444 66 3 344569999999999999986542 222332 22345544221
Q ss_pred CCChHHHHHHHHHHhhCH-HHHHHHHHHHHH
Q 011954 410 KEGVTPLANNIVKLATHV-ERRLTMGKKGYE 439 (474)
Q Consensus 410 d~~~~~la~~i~~ll~~~-~~~~~~~~~~~~ 439 (474)
+.+.+++.+++.+++++. +..+++.+++++
T Consensus 391 ~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 391 WFSKESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 123899999999999864 445555555543
No 178
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.00 E-value=0.15 Score=42.80 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.4
Q ss_pred CCeEEEeCCCCcccc
Q 011954 230 PETYVVHLGNSKDLM 244 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~ 244 (474)
+|+.||+-|||++.+
T Consensus 156 ~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 156 SKISVIHDGIDTDRF 170 (171)
T ss_pred cCcEEeecccchhhc
Confidence 689999999999865
No 179
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.00 E-value=0.23 Score=45.71 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=63.0
Q ss_pred CCCEEEEEecccccC-------cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCe
Q 011954 268 DDDLLFAIINSVSRG-------KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDH 340 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (474)
.++..|+++...... .....+++.+..+.+ ..|+.+++|==.......... ....+.....+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 344455556555443 244556666666554 347788766543210000011 22222211346
Q ss_pred EEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 341 VHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
+.+....-++.+++..||.++.-+ +.+-+||+.+|+||++...+
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceEEecCc
Confidence 667766679999999999988543 35899999999999997543
No 180
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=94.93 E-value=1.5 Score=40.19 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA 390 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~ 390 (474)
..++..+++.+|++|-... -..+=|+++|+|+|+-+.
T Consensus 248 ~~~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 248 PDELLELISQADLVISMRL-------HGAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEEEEec
Confidence 4788899999999997765 256779999999998653
No 181
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=94.78 E-value=0.93 Score=45.34 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=53.8
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceee-eeCCceeeecCC--CC
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIV-VNGTTGLLHPTG--KE 411 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~--d~ 411 (474)
.++.+.++..+ .+++....+-.+-+ -+.-++++||+.+|+|+|+-...+ ....+ +.-..|+-++.. .-
T Consensus 338 rg~vv~~W~PQ-~~iL~h~~vg~Fit----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 338 RGFVVPSWAPQ-AEILAHQAVGGFLT----HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVI 412 (481)
T ss_pred CCEEEeecCCH-HHHhCCcccCeeEe----cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcc
Confidence 35777787643 45777777633333 334569999999999999986442 22233 233456555431 12
Q ss_pred ChHHHHHHHHHHhhCH
Q 011954 412 GVTPLANNIVKLATHV 427 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~ 427 (474)
+.++++++|.+++.++
T Consensus 413 ~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 413 SRSKIEALVRKVMVEE 428 (481)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 3799999999999753
No 182
>PLN02554 UDP-glycosyltransferase family protein
Probab=94.69 E-value=1.2 Score=44.93 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=53.0
Q ss_pred CeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cc-eeeeeCCceeeecC---
Q 011954 339 DHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TM-EIVVNGTTGLLHPT--- 408 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~-e~v~~~~~G~l~~~--- 408 (474)
+++.+.++..+ .+++ ..+++|| .-+.-++++||+.+|+|+|+-...+ .. .+++.-..|+.++.
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~Fv------tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFV------THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCccc------ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 46666777533 4566 4455566 2334469999999999999875432 12 22333345555431
Q ss_pred --------CCCChHHHHHHHHHHhh-CHHHHHH
Q 011954 409 --------GKEGVTPLANNIVKLAT-HVERRLT 432 (474)
Q Consensus 409 --------~d~~~~~la~~i~~ll~-~~~~~~~ 432 (474)
+.-+.++++++|.+++. +++.+++
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhcCCHHHHHH
Confidence 11127899999999996 5544433
No 183
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.65 E-value=2 Score=40.34 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=69.8
Q ss_pred HHHHHhcCCCCCCEEEEEecccccCc--chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc
Q 011954 258 EHVRESLGVRDDDLLFAIINSVSRGK--GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK 335 (474)
Q Consensus 258 ~~~r~~~~~~~~~~~i~~vgrl~~~K--g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~ 335 (474)
..+..++.-...+.+.+.+|.-+..- +.+...+.+.++.+..++ .+..+.|..+.-+. ++..+.|++..+
T Consensus 135 ~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRRTp-~~~~~~L~~~~~-- 206 (311)
T PF06258_consen 135 AAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRRTP-PEAEAALRELLK-- 206 (311)
T ss_pred HhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCCCc-HHHHHHHHHhhc--
Confidence 44555555445566666777543322 333222333333332322 34788999885321 123444444443
Q ss_pred CCCCeEEEec-CC-CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC
Q 011954 336 KIQDHVHFVN-KT-LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG 392 (474)
Q Consensus 336 ~l~~~v~~~g-~~-~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g 392 (474)
-...+.+.. .. +-+..+|+.||.++.+.- + -.-+.||.+.|+||..-..++
T Consensus 207 -~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D----S-vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 207 -DNPGVYIWDGTGENPYLGFLAAADAIVVTED----S-VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred -CCCceEEecCCCCCcHHHHHHhCCEEEEcCc----c-HHHHHHHHHcCCCEEEecCCC
Confidence 234664444 32 447899999999998754 1 235779999999999887766
No 184
>PLN00164 glucosyltransferase; Provisional
Probab=93.92 E-value=2.9 Score=42.06 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=56.4
Q ss_pred eEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceee-eeCCceeeecCC-----
Q 011954 340 HVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIV-VNGTTGLLHPTG----- 409 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~----- 409 (474)
.+.+.++..+ .+++...++-.+-++ +.-++++||+.+|+|+|+-..-+ ....+ +.-..|+-+...
T Consensus 340 g~~v~~w~PQ-~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWAPQ-KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecCCH-HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 3555676533 567777775443343 23459999999999999875332 22222 222456655311
Q ss_pred CCChHHHHHHHHHHhhCHH-HHHHHHHHHHH
Q 011954 410 KEGVTPLANNIVKLATHVE-RRLTMGKKGYE 439 (474)
Q Consensus 410 d~~~~~la~~i~~ll~~~~-~~~~~~~~~~~ 439 (474)
..+.++++++|.+++.+++ ..+.+.+++.+
T Consensus 415 ~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 415 FVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 0127999999999997643 24444444444
No 185
>PLN02207 UDP-glycosyltransferase
Probab=93.75 E-value=1.2 Score=44.32 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=47.8
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeee-CCceeeec------
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVN-GTTGLLHP------ 407 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~------ 407 (474)
++..+.++..+ .++++...+-.+-++ +.-++++||+.+|+|+|+-...+ ....+.+ -+.|+-+.
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccc
Confidence 45666676533 345555555333332 33458999999999999876432 2222222 23454221
Q ss_pred CC-CCChHHHHHHHHHHhh
Q 011954 408 TG-KEGVTPLANNIVKLAT 425 (474)
Q Consensus 408 ~~-d~~~~~la~~i~~ll~ 425 (474)
.. ..+.+++.++|.+++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 00 1127899999999996
No 186
>PLN02534 UDP-glycosyltransferase
Probab=93.57 E-value=3.2 Score=41.70 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=49.5
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeee-eCCceeeec------
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVV-NGTTGLLHP------ 407 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~-~~~~G~l~~------ 407 (474)
.++.+.|+..+ .+++...++-.+-+ -+..++++||+++|+|+|+-...+- ...+. .-+.|+-+.
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvt----H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLT----HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEe----cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 46777787644 56788888733333 3455799999999999998764321 11111 111222110
Q ss_pred ----C--C-CCChHHHHHHHHHHhh
Q 011954 408 ----T--G-KEGVTPLANNIVKLAT 425 (474)
Q Consensus 408 ----~--~-d~~~~~la~~i~~ll~ 425 (474)
. + ..+.+++++++.+++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 0 0 0127899999999996
No 187
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.24 E-value=0.3 Score=42.31 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=30.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
||||+.+.+... ..-+..|.++|++.||+|.|+++.....
T Consensus 1 M~ILlTNDDGi~---a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGID---APGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-TT---SHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCCC---CHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 789998875332 2568999999988899999999765543
No 188
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.02 E-value=0.44 Score=36.05 Aligned_cols=79 Identities=9% Similarity=0.187 Sum_probs=52.7
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec----CC-C--ChHHHHhcCCEEEEcCCC-CCCCCchHHHHHHhcC
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN----KT-L--TVSPYLASIDVLVQNSQA-RGECFGRITIEAMAFQ 382 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g----~~-~--~~~~~~~~adv~v~ps~~-~~E~~~~~~~EAma~G 382 (474)
++|+|+-. .....+++.++++|. ...++| .. . .++..+..+|++|++... .....-.+--+|-..|
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~--~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGG--KLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYG 75 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCC--EEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcC
Confidence 56788722 278899999999986 344443 22 3 388889999999987652 0112223344778889
Q ss_pred CCEEEcCCCCcce
Q 011954 383 LPVLGTAAGGTME 395 (474)
Q Consensus 383 ~PvI~s~~~g~~e 395 (474)
+|++.++..|...
T Consensus 76 ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 76 IPIIYSRSRGVSS 88 (97)
T ss_pred CcEEEECCCCHHH
Confidence 9999998666544
No 189
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.36 E-value=2.6 Score=40.32 Aligned_cols=104 Identities=9% Similarity=0.023 Sum_probs=61.4
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
++.++++..|.-.+.|... .+-+.++.+.+.+ .+.+++++|+..+. ..+..++..+..+-...+.+.|..
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp--~e~~~~l~~~l~~-----~~~~ivl~g~p~~~---e~~~~~~i~~~~~~~~~~~l~g~~ 249 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWD--NDRFSALIDALHA-----RGYEVVLTSGPDKD---ELAMVNEIAQGCQTPRVTSLAGKL 249 (344)
T ss_pred CCCEEEEeCCCCccccCCC--HHHHHHHHHHHHh-----CCCeEEEecCCCHH---HHHHHHHHHhhCCCCcccccCCCC
Confidence 3456666777655667554 2333344333322 35788888864210 122234444433322234566753
Q ss_pred --CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 348 --LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 348 --~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
.++..+++.||++|-+-. | .+==|.|.|+|+|+-
T Consensus 250 sL~el~ali~~a~l~Vs~DS------G-p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 250 TLPQLAALIDHARLFIGVDS------V-PMHMAAALGTPLVAL 285 (344)
T ss_pred CHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 789999999999996543 2 334488999999975
No 190
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=92.30 E-value=3.5 Score=41.77 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=54.7
Q ss_pred CeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC-C---Cc-ceeeeeCCceeeecCCCC
Q 011954 339 DHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA-G---GT-MEIVVNGTTGLLHPTGKE 411 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~-~---g~-~e~v~~~~~G~l~~~~d~ 411 (474)
.+|.+.++..+..-++.. ..+|| + .-|++ +++||+.+|+|+|+... + -. .-+.+.+..+++...+-.
T Consensus 335 ~nV~~~~W~PQ~~lll~H~~v~~Fv--T---HgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~ 408 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLLLDHPAVGGFV--T---HGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLV 408 (496)
T ss_pred CceEEecCCCcHHHhcCCCcCcEEE--E---CCccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcC
Confidence 478888876555433322 33444 3 23444 55999999999996532 2 22 333344444444433222
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGYE 439 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~~ 439 (474)
...+.+++..++++++..+...+-+..
T Consensus 409 -~~~~~~~~~~il~~~~y~~~~~~l~~~ 435 (496)
T KOG1192|consen 409 -SEELLEAIKEILENEEYKEAAKRLSEI 435 (496)
T ss_pred -cHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 234888999998887766655444443
No 191
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=90.98 E-value=4.3 Score=32.98 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=59.1
Q ss_pred CEEEEEecccccCcchHHHHHHH--HHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec--
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSF--YESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-- 345 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~--~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-- 345 (474)
..+++.+|.-. +|.|+.+. .+..+.+++.| -+--++=+|.|..- ..+......+. ..+.+.|
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G---~~kLiiQ~Grg~~~---~~d~~~~~~k~----~gl~id~y~ 69 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRG---FTKLIIQIGRGQPF---FGDPIDLIRKN----GGLTIDGYD 69 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcC---ccEEEEEecCCccC---CCCHHHhhccc----CCeEEEEEe
Confidence 34677788532 77787765 33445555432 33333446766211 11222222222 2344444
Q ss_pred CCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 346 KTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 346 ~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
+...+.++++.||+++. -+..-+++|-+..|+|.|+-
T Consensus 70 f~psl~e~I~~AdlVIs------HAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 70 FSPSLTEDIRSADLVIS------HAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred cCccHHHHHhhccEEEe------cCCcchHHHHHHcCCCEEEE
Confidence 56899999999999993 33345899999999998764
No 192
>PRK09739 hypothetical protein; Provisional
Probab=90.40 E-value=1.4 Score=38.47 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=32.8
Q ss_pred cccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.|||||+|......+|. ...+..+.+.+.+.|++|.++-..
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 568899999877666554 366778888999999999988743
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=90.39 E-value=0.91 Score=38.40 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=50.7
Q ss_pred cHHHHhhhcCCCEEEEcccchhhH-HhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHH
Q 011954 141 GEKAINTALNADLVVLNTAVAGKW-LDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKN 219 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (474)
.+..+++..+||+|+|..+.+... +..+...... ...|++..+-++.. ....| .-+..|..++.+..+.+.+.
T Consensus 80 ~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~-~~~p~~tvvTD~~~--~H~~W--~~~~~D~y~Vase~~~~~l~- 153 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRL-PNIPVVTVVTDFDT--VHPFW--IHPGVDRYFVASEEVKEELI- 153 (169)
T ss_pred HHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcc-cCCcEEEEEcCCCC--CCcCe--ecCCCCEEEECCHHHHHHHH-
Confidence 345666679999999999887766 5544443321 12355444443311 01111 12456666666666555444
Q ss_pred hHHHHhcCCCCCeEEEeCC
Q 011954 220 RTRERLGIRMPETYVVHLG 238 (474)
Q Consensus 220 ~~~~~~~~~~~ki~vi~ng 238 (474)
..|++++++.+..-+
T Consensus 154 ----~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 154 ----ERGIPPERIHVTGIP 168 (169)
T ss_pred ----HcCCChhHEEEeCcc
Confidence 369999998886543
No 194
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.96 E-value=1.1 Score=40.11 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=29.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCc
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEP 118 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 118 (474)
||||+.+.+.-. ..-+..|+++|+ .++||+|+++......
T Consensus 1 mrILlTNDDGi~---a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILLTNDDGIH---APGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEEecCCccC---CHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 789988875322 134888899998 8899999998765543
No 195
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=88.84 E-value=4.5 Score=40.48 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=65.2
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQL-PVLGTAA--GGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~-PvI~s~~--~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
....+.++.|..++.|.- .+...-.+.||+..|| |||.++. ....+++.-.+.+++++..+ +..+ |.+.|
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~--v~~~---~~~iL 407 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKD--VPEL---IKNIL 407 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHH--hhhH---HHHHH
Confidence 567888999999999987 6777779999999997 9999884 23455554456777777433 4555 33333
Q ss_pred h--CHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 425 T--HVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 425 ~--~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
. ..+....|.++....+.+.|-+..
T Consensus 408 ~~i~~~~~~~m~~~v~~~v~r~~~~~~ 434 (464)
T KOG1021|consen 408 LSIPEEEVLRMRENVIRLVPRHFLKKP 434 (464)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhEEeCC
Confidence 3 344556676666655666665554
No 196
>PLN03015 UDP-glucosyl transferase
Probab=88.56 E-value=12 Score=37.43 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=45.8
Q ss_pred EEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceee-eeCCceeeec----CCCC
Q 011954 341 VHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIV-VNGTTGLLHP----TGKE 411 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~----~~d~ 411 (474)
+.+.++..+ .+++....+-.+-++ +.-++++||+.+|+|+|+-...+ ....+ +.-..|+-+. .+..
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 455676533 345555555333332 33458999999999999875432 11111 1223343332 0111
Q ss_pred ChHHHHHHHHHHhh
Q 011954 412 GVTPLANNIVKLAT 425 (474)
Q Consensus 412 ~~~~la~~i~~ll~ 425 (474)
..++++++|.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 27899999999995
No 197
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=88.53 E-value=25 Score=34.19 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=96.8
Q ss_pred HHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCc---c---hHHHHHHHHH
Q 011954 221 TRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGK---G---QDLFLHSFYE 294 (474)
Q Consensus 221 ~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~K---g---~~~ll~a~~~ 294 (474)
..+.+++...++....-+-+...+...... .........++++.++.+|+|.-.+.+.. | ....++. .+
T Consensus 163 f~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~----~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~-~~ 237 (388)
T COG1887 163 FAEAFNIDKENILETGYPRNDKLFDEAGKT----EDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDI-EK 237 (388)
T ss_pred HHHHhcccccceeecCcccchhhhhhccch----hhhHHHhhhcCCcccCceEEecCCccCCccccchhhhhhhhhH-HH
Confidence 455677777766665555443333322211 11223455667778889999987776654 2 2222222 22
Q ss_pred HHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchH
Q 011954 295 SLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRI 374 (474)
Q Consensus 295 l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~ 374 (474)
+.+.+. ..++.+++-=.. ....-..... ...+.+..+....++.++|..+|++|. -++.+
T Consensus 238 ~~~~l~-----~~~~~ii~k~Hp------~is~~~~~~~--~~~~~~~~vs~~~di~dll~~sDiLIT-------DySSv 297 (388)
T COG1887 238 LKEKLG-----ENEYVIIVKPHP------LISDKIDKRY--ALDDFVLDVSDNADINDLLLVSDILIT-------DYSSV 297 (388)
T ss_pred HHHhhc-----cCCeEEEEecCh------hhhhhhhhhh--hccceeEecccchhHHHHHhhhCEEEe-------echHH
Confidence 222221 134555444332 1111111111 112334444456789999999999993 24669
Q ss_pred HHHHHhcCCCEEEcCCCCc-----ceeee---eCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 011954 375 TIEAMAFQLPVLGTAAGGT-----MEIVV---NGTTGLLHPTGKEGVTPLANNIVKLATHVER 429 (474)
Q Consensus 375 ~~EAma~G~PvI~s~~~g~-----~e~v~---~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 429 (474)
..|+|...+|||..-.-+- +.... ...-|-++.. .+++.++|.....+.+.
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~----~~~li~ai~~~~~~~~~ 356 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVET----QEELIDAIKPYDEDGNY 356 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCcccccc----HHHHHHHHHhhhcccch
Confidence 9999999999997632110 11111 1223444443 67888998888774443
No 198
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=87.56 E-value=14 Score=36.74 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=19.6
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecc
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEM 187 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~ 187 (474)
.+||+||.|-+..+.....+... ...+...+.|..
T Consensus 400 ~~PdlI~GnYsDgnlvA~LLs~~----lgv~~~~iaHsL 434 (550)
T PF00862_consen 400 GKPDLIIGNYSDGNLVASLLSRK----LGVTQCFIAHSL 434 (550)
T ss_dssp S--SEEEEEHHHHHHHHHHHHHH----HT-EEEEE-SS-
T ss_pred CCCcEEEeccCcchHHHHHHHhh----cCCceehhhhcc
Confidence 78999999976666544443332 345677777864
No 199
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=87.49 E-value=3.1 Score=42.08 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=28.0
Q ss_pred EEEEEecCCCCCCh-------hHHHHHHHHHHHhcC-cEEEEEeC
Q 011954 76 LVLLVSHELSLSGG-------PLLLMELAFLLRGVG-AEVVWITN 112 (474)
Q Consensus 76 kIl~v~~~~~~gG~-------~~~~~~l~~~L~~~G-~~V~v~~~ 112 (474)
||++|++....+|. +.-+..++..|.+.| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 58899887665553 234678888899999 89999954
No 200
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=87.32 E-value=0.51 Score=44.22 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCC-CEEEcCCC--CcceeeeeCCceeeecCCCCChHHHHHHH
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQL-PVLGTAAG--GTMEIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~-PvI~s~~~--g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
.+..+.|+.|..++.|.- ...+..-+.|||++|| |||.++.- ...|++.=....+.++..+ +.+|.+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~--~~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEAD--LPELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHH--HHHHHHHH
Confidence 357788999999999874 3447889999999996 88887632 3356663345666676554 54444443
No 201
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=84.80 E-value=1.6 Score=31.75 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=35.4
Q ss_pred hcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccc
Q 011954 140 KGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMR 188 (474)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 188 (474)
+.++.+...++.||||.|+..+......++.... .+.+.+++-|...
T Consensus 40 pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~--mGlktVfTDHSLf 86 (90)
T PF08288_consen 40 PLLRNILIRERIDIVHGHQAFSTLCHEAILHART--MGLKTVFTDHSLF 86 (90)
T ss_pred HHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHh--CCCcEEeeccccc
Confidence 3467777889999999999887776666665544 4568899988763
No 202
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=83.01 E-value=3.8 Score=32.57 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=31.3
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~ 393 (474)
+++.+++..+|++|--|. .+..--.+-.++.+|+|+|..-+|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 678899999999998886 56655566678899999998776654
No 203
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=82.77 E-value=14 Score=32.54 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHc-CCCCeEEEecCCCChHHHHhcCCEEEEcCCC--------CCCCCchHHHH
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLASIDVLVQNSQA--------RGECFGRITIE 377 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~--------~~E~~~~~~~E 377 (474)
.+.++.++...+....++...+++..+++ |....+...-..++..+.+..||++++|.-. ..-++.-.+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 46788888877654455667777777888 7633322222245778899999999998521 01122334446
Q ss_pred HHhcCCCEEEcCCCC
Q 011954 378 AMAFQLPVLGTAAGG 392 (474)
Q Consensus 378 Ama~G~PvI~s~~~g 392 (474)
+...|+|++.+..|.
T Consensus 110 ~~~~g~~i~G~SAGa 124 (212)
T cd03146 110 ALERGVVYIGWSAGS 124 (212)
T ss_pred HHHCCCEEEEECHhH
Confidence 677899999887663
No 204
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=82.34 E-value=2 Score=36.29 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=43.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHh-hhcCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAIN-TALNAD 152 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D 152 (474)
..+|++++..-+.|| --..+++.|.+.|++|.++.........+......+.+...++.+.......... ....+|
T Consensus 25 ~~~v~il~G~GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d 101 (169)
T PF03853_consen 25 GPRVLILCGPGNNGG---DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPAD 101 (169)
T ss_dssp T-EEEEEE-SSHHHH---HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCES
T ss_pred CCeEEEEECCCCChH---HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccccccc
Confidence 456988887544444 5677889999999999996643333333333323444455566555433222211 122566
Q ss_pred EEEE
Q 011954 153 LVVL 156 (474)
Q Consensus 153 iV~~ 156 (474)
+|+=
T Consensus 102 lIID 105 (169)
T PF03853_consen 102 LIID 105 (169)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 205
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=81.23 E-value=32 Score=33.85 Aligned_cols=72 Identities=4% Similarity=-0.039 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.+.|+... .+..+.++++++- .....+ +++...+..+|+++..+. .+-++.-. .+.-+.|.+.-|
T Consensus 207 ~I~V~nRt-------~~ra~~La~~~~~---~~~~~~-~~l~~~l~~aDiVI~aT~---a~~~vi~~-~~~~~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT-------IEKAQKITSAFRN---ASAHYL-SELPQLIKKADIIIAAVN---VLEYIVTC-KYVGDKPRVFID 271 (414)
T ss_pred EEEEECCC-------HHHHHHHHHHhcC---CeEecH-HHHHHHhccCCEEEECcC---CCCeeECH-HHhCCCCeEEEE
Confidence 67777764 2344666666541 112222 567888999999999875 23333333 344578998888
Q ss_pred CCCccee
Q 011954 390 AGGTMEI 396 (474)
Q Consensus 390 ~~g~~e~ 396 (474)
.+-.+++
T Consensus 272 LavPRdi 278 (414)
T PRK13940 272 ISIPQAL 278 (414)
T ss_pred eCCCCCC
Confidence 7655555
No 206
>PRK06988 putative formyltransferase; Provisional
Probab=80.15 E-value=7.3 Score=36.65 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=44.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh-hhhhcccchhccceeeeehh-----cHHHHhh
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE-VIYSLEHKMLDRGVQVLSAK-----GEKAINT 147 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 147 (474)
||||+|+... .+.....+.|.+.|++|..+..+.+..... ....+.......+++++... ......+
T Consensus 2 ~mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~ 74 (312)
T PRK06988 2 KPRAVVFAYH-------NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVA 74 (312)
T ss_pred CcEEEEEeCc-------HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHH
Confidence 5799998752 345555666777899977655443221111 11123334455566665421 2234456
Q ss_pred hcCCCEEEEcc
Q 011954 148 ALNADLVVLNT 158 (474)
Q Consensus 148 ~~~~DiV~~~~ 158 (474)
..+||++++-.
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 78999998753
No 207
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=79.21 E-value=4.6 Score=30.55 Aligned_cols=73 Identities=8% Similarity=0.053 Sum_probs=47.8
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-CCCChHHHHhcCCEEEEcCCCCCCCCchHHHH--HHhcCCCEEE
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-KTLTVSPYLASIDVLVQNSQARGECFGRITIE--AMAFQLPVLG 387 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~E--Ama~G~PvI~ 387 (474)
++++|.|.++ .-..+.+++.+++.|++ +.+.- ...++......+|+++.... -.+-..-++ +-..|+||..
T Consensus 4 ll~C~~GaSS-s~la~km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~PQ---v~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 4 LVLCAGGGTS-GLLANALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAPQ---MASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEECCCCCCH-HHHHHHHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcCh---HHHHHHHHHHHhhhcCCCEEE
Confidence 5667777433 33678999999999985 33333 34678888889999887664 122222232 4455789987
Q ss_pred cC
Q 011954 388 TA 389 (474)
Q Consensus 388 s~ 389 (474)
.+
T Consensus 78 I~ 79 (99)
T cd05565 78 TT 79 (99)
T ss_pred eC
Confidence 65
No 208
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=78.73 E-value=7.8 Score=36.28 Aligned_cols=42 Identities=14% Similarity=-0.105 Sum_probs=31.2
Q ss_pred cccCEEEEEecCCCC-CChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||+++|++++...++ -... .....+.++|++.||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 567799999965444 2222 35689999999999999998643
No 209
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=78.48 E-value=3.3 Score=31.07 Aligned_cols=76 Identities=11% Similarity=0.084 Sum_probs=48.7
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH--hcCCCEEE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM--AFQLPVLG 387 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm--a~G~PvI~ 387 (474)
-|+++|.|..+.- ....+++.+++.|++-.+.-.+. .++......+|+++..... .+-..-++.. ..|+||..
T Consensus 6 ILl~C~~G~sSS~-l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pqi---~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 6 ILLLCAAGMSTSL-LVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQV---AYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred EEEECCCchhHHH-HHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECchH---HHHHHHHHHHhhhcCCCEEE
Confidence 3678888865443 66788999999988644444332 3566667788998887651 2233344444 34779988
Q ss_pred cCC
Q 011954 388 TAA 390 (474)
Q Consensus 388 s~~ 390 (474)
.+.
T Consensus 81 I~~ 83 (95)
T TIGR00853 81 ING 83 (95)
T ss_pred eCh
Confidence 753
No 210
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=78.23 E-value=26 Score=30.71 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=65.3
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCC---CCchHHHHHHh--
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGE---CFGRITIEAMA-- 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E---~~~~~~~EAma-- 380 (474)
+++++|+.+.+ .....++......+....+......++....+. ..|++++-..- .+ ..|..+++.+.
T Consensus 3 ~~~Ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l-~~~~~~~g~~~~~~l~~~ 77 (216)
T PRK10840 3 NMNVIIADDHP----IVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSM-PGDKYGDGITLIKYIKRH 77 (216)
T ss_pred ceEEEEECCcH----HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcC-CCCCCCCHHHHHHHHHHH
Confidence 46777787754 345566666655432111222233334444433 36888875431 22 25677776654
Q ss_pred -cCCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 -FQLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 -~G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.++|+|.- +.... .+.+..|..|++..+.+ ++++.++|..++.
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~--~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGA--PTDLPKALAALQK 125 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHHHC
Confidence 34666653 33321 33456688999999988 9999999998876
No 211
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=78.08 E-value=6.9 Score=32.20 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=31.8
Q ss_pred CEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|||++++......|. ...+..+++.+.+.|+++.++-...
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 799999987766555 5778888888888899999998654
No 212
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=77.76 E-value=3.3 Score=33.42 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA 139 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (474)
.=...++++|+++||||.+.+... +...+...|+.+...
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~ 51 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPI 51 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHhccCCeEEEeeccc----------ceecccccCceEEEe
Confidence 347799999999999999888643 234445556665543
No 213
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=77.50 E-value=6 Score=31.63 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=30.7
Q ss_pred CEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcE-EEEEeCC
Q 011954 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGAE-VVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~-V~v~~~~ 113 (474)
||++++....+.|+. .+...++++++.+.||+ +.|+...
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 679998887766554 37899999999999998 4777643
No 214
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=77.31 E-value=28 Score=32.96 Aligned_cols=308 Identities=15% Similarity=0.106 Sum_probs=163.0
Q ss_pred CChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEEEEccc-chhh
Q 011954 87 SGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLVVLNTA-VAGK 163 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~-~~~~ 163 (474)
.|..+-+.-|+..|++.. ++|.++......... -...+...++++... . ......||++--+. ...-
T Consensus 18 NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~-----~~~~~~~~~~~~~~~---~--~~~~~lDVlIEmg~ql~~~ 87 (364)
T PF10933_consen 18 NGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIP-----AALMLDLLDVPLVDF---D--DAIDELDVLIEMGAQLDPE 87 (364)
T ss_pred hchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCC-----cccccccCCCceecH---H--HhcccCCEEEEccCccCHH
Confidence 677777888888888765 688888743321110 011222334444332 1 12347898886553 3344
Q ss_pred HHhHHhhhcccccccceeeeeeccc------cccchhhhhhcc--ccccccccccc---ccHHHHHHhHHHHhcCCCCCe
Q 011954 164 WLDGVLKDKVSQVLPKVLWWIHEMR------GHYFKLEYVKHL--PFVAGAMIDSY---TTAEYWKNRTRERLGIRMPET 232 (474)
Q Consensus 164 ~~~~~~~~~~~~~~~~~v~~~h~~~------~~~~~~~~~~~~--~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~ki 232 (474)
|+..+... +.+++.+..+.. ...|.+.....+ ...|.+...-. .+..++.. - ....+
T Consensus 88 ~~~~~~~~-----G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~~~yD~VW~lPq~~~~~~~yl~~----l---~r~Pv 155 (364)
T PF10933_consen 88 WLDYMRAR-----GGKVVSYRCGNDYVMDIESMLFNKPSGHLFNGAPYDEVWTLPQFENTCAPYLET----L---HRCPV 155 (364)
T ss_pred HHHHHHHc-----CCeEEEEeCCchHHHHhhHHhcCCCCCccCCCCCCceeEeccchhhhchHHHHH----H---hcCCc
Confidence 54444433 457777666532 111111111111 23333332111 22233222 1 22457
Q ss_pred EEEeCCCCccccchhhhhHHHHHhHHHHH---HhcCCCCC--CEEE-EEecccccCcch---HHHHHHHHHHHHHHHHhc
Q 011954 233 YVVHLGNSKDLMDIAEDSVARRVLREHVR---ESLGVRDD--DLLF-AIINSVSRGKGQ---DLFLHSFYESLQLIREKK 303 (474)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~--~~~i-~~vgrl~~~Kg~---~~ll~a~~~l~~~~~~~~ 303 (474)
+++|.-=++-+++... ..+. .+||..++ ...+ ++=-++.--|.- -++.|++-+-
T Consensus 156 ~~vP~iWsP~F~~~~~---------~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~-------- 218 (364)
T PF10933_consen 156 RVVPHIWSPRFLDQRI---------AQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRA-------- 218 (364)
T ss_pred eeeCccCCchhHHHHH---------HhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHh--------
Confidence 7887655544443221 1221 13443321 1222 222333333432 2344444332
Q ss_pred cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCC--CCeEEEecCCCChHHHHhc-CCEEEEcCCCCCCCCchHHHHHHh
Q 011954 304 LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKI--QDHVHFVNKTLTVSPYLAS-IDVLVQNSQARGECFGRITIEAMA 380 (474)
Q Consensus 304 ~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~~~~~~~~~~-adv~v~ps~~~~E~~~~~~~EAma 380 (474)
...-+..+.+-+..+- ....++..++..+.+ +....|.|.. +++.+++. .|++|.-- | .-+.-....||+.
T Consensus 219 -~P~~v~~~~V~Nt~~~--ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~VvSHq-W-eN~lNYlY~daLy 292 (364)
T PF10933_consen 219 -DPDAVEHVYVTNTYHL--KEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVVSHQ-W-ENPLNYLYYDALY 292 (364)
T ss_pred -ChhhcceEEEecchhh--hcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEEecc-c-cchhhHHHHHHHh
Confidence 1123455555543211 134556666666655 4567888865 66666644 67777443 3 6667778889999
Q ss_pred cCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 381 FQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
-|=|.|-.. .++ ++.|+..+..| ..+=++++.+.+. ....++...+++++.+.+ ++...
T Consensus 293 ggYPLVHNS-----~~l--~d~GYYY~~fD--~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~-~~p~n 352 (364)
T PF10933_consen 293 GGYPLVHNS-----PLL--KDVGYYYPDFD--AFEGARQLLRAIREHDADLDAYRARARRLLDR-LSPEN 352 (364)
T ss_pred cCCCcccCc-----chh--cccCcCCCCcc--HHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-hCCCC
Confidence 999999753 355 34899999998 8888888888877 555677888888877755 55443
No 215
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=76.72 E-value=13 Score=32.05 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh---cHHHHhhhcCCCEEEEccc--chhh
Q 011954 91 LLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK---GEKAINTALNADLVVLNTA--VAGK 163 (474)
Q Consensus 91 ~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~DiV~~~~~--~~~~ 163 (474)
..+..|++.|.++ |+.|.+-+..... .......+.. .....+.+.. ..++++...+||+++.... ++..
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~tg-~~~~~~~~~~---~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnl 110 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPTG-REMARKLLPD---RVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNL 110 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CCH-HHHHHGG-GG---G-SEEE---SSHHHHHHHHHHH--SEEEEES----HHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCch-HHHHHHhCCC---CeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHH
Confidence 7799999999887 7777776653221 1111111111 1122223322 3567778899999987542 3332
Q ss_pred HHhHHhhhcccccccceeeeeecccc------ccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeC
Q 011954 164 WLDGVLKDKVSQVLPKVLWWIHEMRG------HYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHL 237 (474)
Q Consensus 164 ~~~~~~~~~~~~~~~~~v~~~h~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~n 237 (474)
+..+.+..+ |++.---.+.. ..+.......+..++.+.+.+....+.+. .+|.+++++.|..|
T Consensus 111 -l~~a~~~~i-----p~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~-----~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 111 -LREAKRRGI-----PVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR-----KLGAPPERVHVTGN 179 (186)
T ss_dssp -HHH-----S------EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH-----TTT-S--SEEE---
T ss_pred -HHHHhhcCC-----CEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcceEEEeCc
Confidence 222222222 32221111111 11122334445666667666666655554 57888889999876
No 216
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=76.51 E-value=29 Score=31.07 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=52.5
Q ss_pred EEEEEcCCC--CcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCC--------CCCCCchHHHHHH
Q 011954 310 HAVVVGSDM--NAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQA--------RGECFGRITIEAM 379 (474)
Q Consensus 310 ~l~i~G~g~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~--------~~E~~~~~~~EAm 379 (474)
+++++.... .+..+|...+++..+++|.. +..+-..++..+.+..+|++.++.=. ..-++--.+-|+.
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~ 110 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAV 110 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHH
Confidence 455554432 22334667788888888874 54444445677889999988877520 1113333466899
Q ss_pred hcCCCEEEcCCCC
Q 011954 380 AFQLPVLGTAAGG 392 (474)
Q Consensus 380 a~G~PvI~s~~~g 392 (474)
..|+|++.+..|.
T Consensus 111 ~~G~~~~G~SAGA 123 (233)
T PRK05282 111 KNGTPYIGWSAGA 123 (233)
T ss_pred HCCCEEEEECHHH
Confidence 9999999998775
No 217
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=76.25 E-value=18 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHhcCCEEEEcCCCCCCCCc--hHHH---HHHhcCCCEEEcCCCCc
Q 011954 352 PYLASIDVLVQNSQARGECFG--RITI---EAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~~--~~~~---EAma~G~PvI~s~~~g~ 393 (474)
.++..||+.|.-- +|-+- ++.+ -|.|.|+|.|.-.-...
T Consensus 68 ~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI~lh~~~~ 111 (141)
T PF11071_consen 68 TLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLITLHPEEL 111 (141)
T ss_pred HHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchhc
Confidence 4689999988632 22211 2333 46889999998765443
No 218
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=75.93 E-value=19 Score=35.23 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=56.9
Q ss_pred HHHHHhcCCCEEEcCCC---CcceeeeeCCceeeecC-CCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 011954 375 TIEAMAFQLPVLGTAAG---GTMEIVVNGTTGLLHPT-GKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHM 450 (474)
Q Consensus 375 ~~EAma~G~PvI~s~~~---g~~e~v~~~~~G~l~~~-~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~ 450 (474)
+-=-|+||-.|+..+.. -..+.+.....=+-+.. +| .++|.++|..+.++++..++++++|++++.+..+.+.+
T Consensus 230 lkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d--~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~ 307 (395)
T PF05686_consen 230 LKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDD--LSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDV 307 (395)
T ss_pred HHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccc--hhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33346666665554311 11122223333333443 23 88999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q 011954 451 SQRIALVLREVL 462 (474)
Q Consensus 451 ~~~~~~~~~~~~ 462 (474)
..-+..++.+..
T Consensus 308 ~~Y~~~LL~eYa 319 (395)
T PF05686_consen 308 YCYWRRLLLEYA 319 (395)
T ss_pred HHHHHHHHHHHH
Confidence 876666665543
No 219
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=75.13 E-value=78 Score=30.12 Aligned_cols=137 Identities=10% Similarity=0.095 Sum_probs=75.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC------CChH----HHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT------LTVS----PYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~~~----~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
.+-+++++|.| +......+...+.|. .++.+.... +++. .+...+|+++..|....-..|....
T Consensus 173 ~~k~vLvIGaG-----em~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 173 KKASLLFIGYS-----EINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cCCEEEEEccc-----HHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 46689999998 466666666666666 467776642 2222 5567899999863211345566666
Q ss_pred HHHhcCCCEEEcCCCCccee--eeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011954 377 EAMAFQLPVLGTAAGGTMEI--VVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRI 454 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~--v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 454 (474)
|.+..-.+-+.-|..-.+++ +....+-.+++ +++|.+.+.+- ...|++....+...+ +..+.++
T Consensus 247 ~~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly~-----iDdL~~i~~~n---~~~R~~~~~~ae~iI------~~~~~~~ 312 (338)
T PRK00676 247 ESLADIPDRIVFDFNVPRTFPWSETPFPHRYLD-----MDFISEWVQKH---LQCRKEVNNKHKLSL------REAAYKQ 312 (338)
T ss_pred HHHhhccCcEEEEecCCCCCccccccCCcEEEE-----hHHHHHHHHHH---HHHHHHHHHHHHHHH------HHHHHHH
Confidence 65553222345554443433 22223334444 56666655443 333444444444333 3566667
Q ss_pred HHHHHHHHh
Q 011954 455 ALVLREVLQ 463 (474)
Q Consensus 455 ~~~~~~~~~ 463 (474)
.+.|++-..
T Consensus 313 ~~~~~~~~~ 321 (338)
T PRK00676 313 WESYEKKLS 321 (338)
T ss_pred HHHHHHHHh
Confidence 777766554
No 220
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=74.14 E-value=20 Score=35.66 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=25.7
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+.|||++... ....=..|++.|.++|++|.++..
T Consensus 119 ~~mkILVTGa------tGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGG------AGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEECC------ccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3588887653 335667888999999999998874
No 221
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=73.79 E-value=8.2 Score=35.06 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=28.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
||||+.+.+.... .-+..|+++|.+.| +|+|+.+...+.
T Consensus 1 M~ILlTNDDGi~a---pGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGVHS---PGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCCCC---HHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 6888888753221 34788888998887 899998765543
No 222
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=73.76 E-value=14 Score=32.12 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=42.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (474)
||||+++.+ |....+..+.+++.+.+ ++|.++....+... ........+++++...
T Consensus 1 m~ki~vl~s-----g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~------~~~~a~~~gIp~~~~~~~~~~~~~~~~ 69 (200)
T PRK05647 1 MKRIVVLAS-----GNGSNLQAIIDACAAGQLPAEIVAVISDRPDAY------GLERAEAAGIPTFVLDHKDFPSREAFD 69 (200)
T ss_pred CceEEEEEc-----CCChhHHHHHHHHHcCCCCcEEEEEEecCccch------HHHHHHHcCCCEEEECccccCchhHhH
Confidence 478998886 22356778888887764 66665433322111 1223344556554311
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
......+..++|++++..
T Consensus 70 ~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 70 AALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHhCcCEEEhHH
Confidence 123345568999998853
No 223
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=73.00 E-value=7 Score=29.40 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=48.7
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHH--HHhcCCCEEEc
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIE--AMAFQLPVLGT 388 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~E--Ama~G~PvI~s 388 (474)
++++|.|..++- ..+.+++.+++.|++-.|.-.+ ..++......+|+++.... -.+-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS~-~~~ki~~~~~~~~~~~~v~~~~-~~~~~~~~~~~Diil~~Pq---v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTSI-LVKKMKKAAEKRGIDAEIEAVP-ESELEEYIDDADVVLLGPQ---VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHHH-HHHHHHHHHHHCCCceEEEEec-HHHHHHhcCCCCEEEEChh---HHHHHHHHHHHhccCCCcEEEc
Confidence 678888875553 5678899999999864444443 2356667788999888665 122233343 34578898876
Q ss_pred C
Q 011954 389 A 389 (474)
Q Consensus 389 ~ 389 (474)
+
T Consensus 78 ~ 78 (96)
T cd05564 78 D 78 (96)
T ss_pred C
Confidence 5
No 224
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=72.92 E-value=14 Score=33.63 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011954 414 TPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREV 461 (474)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 461 (474)
++|.++|..+.++++..++++++|++.+.+..+.+.+..-+..++.+-
T Consensus 202 ~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 202 RELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYDYMFHLLQEY 249 (256)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 349999999999999999999999999999899998887777766553
No 225
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=72.33 E-value=9.2 Score=23.79 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhccccccCCCcc
Q 011954 21 ILVLFTLSTAMLFFIRSTANSCNTSSIT 48 (474)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (474)
+.-||.+|++.|+-.|-...-.++.+..
T Consensus 2 cttlfllstlamlwrrrfanrvqpeps~ 29 (54)
T PF15201_consen 2 CTTLFLLSTLAMLWRRRFANRVQPEPSG 29 (54)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 4456777888888887543333343333
No 226
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=71.58 E-value=43 Score=28.38 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=46.0
Q ss_pred cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 356 SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 356 ~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..|++++-... .+.-|..+++.+....|+|....... .+.+..|..|++..+.+ .+++.++|..++.
T Consensus 47 ~~dlvi~d~~~-~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~--~~~l~~~i~~~~~ 117 (196)
T PRK10360 47 GVQVCICDISM-PDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCS--PDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHc
Confidence 35887775431 34456777777777788876532222 23344577899999988 9999999998875
No 227
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=71.37 E-value=6.1 Score=40.04 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=27.4
Q ss_pred EEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 77 VLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 77 Il~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+.+.+.. |+. -.....++++|+++||+|+++++.
T Consensus 23 Il~~~P~~--~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 23 ILAVFPTP--AYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred EEEEcCCC--CCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 88776543 333 277899999999999999999864
No 228
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=70.19 E-value=18 Score=27.42 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=36.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe-CCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT-NQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
||||++.+ |+ .=+.|+..|.+.-.--.+++ +..+. . ...-....+.......+..+.+..++|+
T Consensus 1 MkVLviGs-----Gg--REHAia~~l~~s~~v~~v~~aPGN~G-~-------~~~~~~~~~~~~d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 1 MKVLVIGS-----GG--REHAIAWKLSQSPSVEEVYVAPGNPG-T-------AELGKNVPIDITDPEELADFAKENKIDL 65 (100)
T ss_dssp EEEEEEES-----SH--HHHHHHHHHTTCTTEEEEEEEE--TT-G-------GGTSEEE-S-TT-HHHHHHHHHHTTESE
T ss_pred CEEEEECC-----CH--HHHHHHHHHhcCCCCCEEEEeCCCHH-H-------HhhceecCCCCCCHHHHHHHHHHcCCCE
Confidence 78999985 33 45677888876533223333 22221 1 1111111122333445667778899999
Q ss_pred EEEcc
Q 011954 154 VVLNT 158 (474)
Q Consensus 154 V~~~~ 158 (474)
|++-.
T Consensus 66 vvvGP 70 (100)
T PF02844_consen 66 VVVGP 70 (100)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99864
No 229
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=70.06 E-value=20 Score=31.46 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=29.8
Q ss_pred EEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 76 LVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 76 kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
+|.++++ ..||.. +...++..+|+++|..|.++-..-+-
T Consensus 3 ~iIVvTS--GKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 3 RIIVVTS--GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred eEEEEec--CCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 5666664 456665 67889999999999999999866543
No 230
>PRK06849 hypothetical protein; Provisional
Probab=69.61 E-value=11 Score=36.75 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.3
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
.+|+||++... ......+++.|.+.||+|+++....
T Consensus 3 ~~~~VLI~G~~------~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR------APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46889988532 2368899999999999999997653
No 231
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=68.98 E-value=97 Score=30.23 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=63.7
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
+...+.+....+..-.-..-|++++.+ ++|++.+++.-.-+. -. +...+.++-.-.+.+++..
T Consensus 48 ~~p~vWiHaaSVGEv~a~~pLv~~l~~----------~~P~~~ilvTt~T~T----g~---e~a~~~~~~~v~h~YlP~D 110 (419)
T COG1519 48 EGPLVWIHAASVGEVLAALPLVRALRE----------RFPDLRILVTTMTPT----GA---ERAAALFGDSVIHQYLPLD 110 (419)
T ss_pred CCCeEEEEecchhHHHHHHHHHHHHHH----------hCCCCCEEEEecCcc----HH---HHHHHHcCCCeEEEecCcC
Confidence 345666677766665555555555543 568999888775432 12 2233344433345556543
Q ss_pred --CChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 348 --LTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 348 --~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
--+..++ -.-|++|+-- .|-||+.+.|+-..|+|.+.-|
T Consensus 111 ~~~~v~rFl~~~~P~l~Ii~E---tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 111 LPIAVRRFLRKWRPKLLIIME---TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred chHHHHHHHHhcCCCEEEEEe---ccccHHHHHHHHHcCCCEEEEe
Confidence 2234444 4567777654 6999999999999999998654
No 232
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=67.87 E-value=19 Score=32.73 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=26.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhc---CcEEEEEeCCCCCCc
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV---GAEVVWITNQKPNEP 118 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~---G~~V~v~~~~~~~~~ 118 (474)
||||+.+.+.-.. .=+..|+++|.+. |++|+|+++...+..
T Consensus 1 M~ILlTNDDGI~a---~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg 44 (261)
T PRK13931 1 MRILITNDDGINA---PGLEVLEQIATELAGPDGEVWTVAPAFEQSG 44 (261)
T ss_pred CeEEEEcCCCCCC---HhHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 5799888753221 2256666666653 469999997765443
No 233
>PRK06756 flavodoxin; Provisional
Probab=67.32 E-value=12 Score=30.63 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=29.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
||||+++... ..|..+..+..+++.|.+.|++|.++..
T Consensus 1 mmkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 3688888753 3466678899999999999999987754
No 234
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=67.30 E-value=74 Score=28.84 Aligned_cols=102 Identities=11% Similarity=0.067 Sum_probs=60.7
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec--C-----CCChHHHHh
Q 011954 283 KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN--K-----TLTVSPYLA 355 (474)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g--~-----~~~~~~~~~ 355 (474)
.+-..+.+.+-++. ..++.+++++........++.+.+.+..+++|.. .+..+. . .++..+.+.
T Consensus 11 ~~~~~i~~~~~~la--------g~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~ 81 (250)
T TIGR02069 11 VGDREILREFVSRA--------GGEDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLS 81 (250)
T ss_pred CChHHHHHHHHHHh--------CCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHh
Confidence 34444666664443 1245577777643322223566777777888874 343333 1 234667899
Q ss_pred cCCEEEEcCCC------CCCCCc--hHHHHHHhcCCCEEEcCCCCc
Q 011954 356 SIDVLVQNSQA------RGECFG--RITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 356 ~adv~v~ps~~------~~E~~~--~~~~EAma~G~PvI~s~~~g~ 393 (474)
.||++++..-. .....+ -.+-++...|.|++.+..|.+
T Consensus 82 ~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 82 NATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred hCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 99998886421 012223 346688999999999987754
No 235
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=67.29 E-value=42 Score=28.35 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHH--HhcCcEEEEEeCCCCC
Q 011954 87 SGGPLLLMELAFLL--RGVGAEVVWITNQKPN 116 (474)
Q Consensus 87 gG~~~~~~~l~~~L--~~~G~~V~v~~~~~~~ 116 (474)
||--..+..|.+.+ ....++..+++..+..
T Consensus 8 GGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~ 39 (170)
T PF08660_consen 8 GGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQ 39 (170)
T ss_pred cHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcc
Confidence 44346677777777 2245677778765544
No 236
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=67.23 E-value=9.8 Score=34.46 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=29.5
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
++|+||+.+.+.-.. .-+..|+++|.+.| +|.|+++.....
T Consensus 4 ~~M~ILltNDDGi~a---~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGIEG---EGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCCCC---HHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 357999888753221 34888889998888 899998765543
No 237
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=66.78 E-value=21 Score=32.48 Aligned_cols=60 Identities=18% Similarity=0.062 Sum_probs=39.8
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCccee----ee-eCCceeeecCC
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI----VV-NGTTGLLHPTG 409 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~----v~-~~~~G~l~~~~ 409 (474)
+++.+++..+|+++..+. .+...-.+..|+..|+|+|....|-..+- .. ....++++.++
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n 116 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPN 116 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECc
Confidence 577777778999997665 56555567789999999998754433221 11 13456666554
No 238
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=66.57 E-value=97 Score=29.39 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=30.1
Q ss_pred EEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
|..|.+ ...||.+ -.+..|++.|.++|+.|.|++..++.
T Consensus 37 VIsVGN-ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 37 VISVGN-LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred EEEEcc-cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 555554 6667775 56899999999999999999965543
No 239
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.89 E-value=19 Score=29.96 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=29.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
.+||+++.. +-.+.+..++..+...|.++.++++..
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 467888884 113899999999999999999998765
No 240
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=65.82 E-value=89 Score=27.02 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=65.6
Q ss_pred EEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchH-HHHHHHHHHHcCCCCeEEEecCCCCh
Q 011954 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKF-ETELRNFVAEKKIQDHVHFVNKTLTV 350 (474)
Q Consensus 272 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~-~~~l~~~~~~~~l~~~v~~~g~~~~~ 350 (474)
-|+-.|++.-..=++++++--+ ..+++.+.++|+|..-+++. +....+..++.
T Consensus 6 g~ik~GniGts~v~dlllDErA-----------dRedi~vrVvgsgaKM~Pe~veaav~~~~e~~--------------- 59 (277)
T COG1927 6 GFIKCGNIGTSPVVDLLLDERA-----------DREDIEVRVVGSGAKMDPECVEAAVTEMLEEF--------------- 59 (277)
T ss_pred EEEEecccchHHHHHHHHHhhc-----------ccCCceEEEeccccccChHHHHHHHHHHHHhc---------------
Confidence 3445576654444444444322 34899999999986444331 22222333322
Q ss_pred HHHHhcCCEEEEcCCCCCCCCchHHHHHHh-cCCCEE-EcCCCCc--ceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 351 SPYLASIDVLVQNSQARGECFGRITIEAMA-FQLPVL-GTAAGGT--MEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 351 ~~~~~~adv~v~ps~~~~E~~~~~~~EAma-~G~PvI-~s~~~g~--~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
..|+.++-|-...-+.|-..-|.+. +|+|+| .+|.+|. .+-+++...|++.-.-| .+.-+=.+++
T Consensus 60 -----~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIivk~D----pmiGArREFL 128 (277)
T COG1927 60 -----NPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIVKAD----PMIGARREFL 128 (277)
T ss_pred -----CCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEecCC----cccchhhhhc
Confidence 2355444333214455667778776 688875 4677765 45555566788776543 5555555555
No 241
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=65.64 E-value=58 Score=28.50 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec---CCCChHHHHhcCCEEEEcCCC-------CCCC-CchHH
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN---KTLTVSPYLASIDVLVQNSQA-------RGEC-FGRIT 375 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~~~~~~~~~~~adv~v~ps~~-------~~E~-~~~~~ 375 (474)
.+.++.++........++.+.+.+..+++|........- ..+++.+.+..||+++++.-. ..+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 356777776654333346677888888888754333332 236778899999999987421 0122 22356
Q ss_pred HHHHhcCCCEEEcCCCC
Q 011954 376 IEAMAFQLPVLGTAAGG 392 (474)
Q Consensus 376 ~EAma~G~PvI~s~~~g 392 (474)
.+....|+|++.+..|.
T Consensus 108 ~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 108 LKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHcCCeEEEcCHHH
Confidence 78888899999987664
No 242
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=65.47 E-value=96 Score=29.90 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHHHhcCCC---CCCEEEEEecccccCcc-hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHH
Q 011954 257 REHVRESLGVR---DDDLLFAIINSVSRGKG-QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFV 332 (474)
Q Consensus 257 ~~~~r~~~~~~---~~~~~i~~vgrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~ 332 (474)
+..+.+++|++ ++.+.|...+ ..+. +..++++++.. ...+.++|.++- -...++...
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~---Ye~~~l~~ll~~~~~~----------~~pv~llvp~g~------~~~~~~~~~ 228 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC---YENAALASLLDAWAAS----------PKPVHLLVPEGR------ALNSLAAWL 228 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe---CCchHHHHHHHHHhcC----------CCCeEEEecCCc------cHHHHHHHh
Confidence 56788889985 4445554444 4443 77777777643 256777777764 344444333
Q ss_pred H----HcC---C--CCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 333 A----EKK---I--QDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 333 ~----~~~---l--~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
. ..| . .-.++++.+ +++...++..||+-++= +|- +.+=|+-+|+|.|=--
T Consensus 229 ~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR----GED---SfVRAqwAgkPFvWhI 289 (374)
T PF10093_consen 229 GDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVR----GED---SFVRAQWAGKPFVWHI 289 (374)
T ss_pred ccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEe----cch---HHHHHHHhCCCceEec
Confidence 2 001 0 124666675 48899999999996653 444 6788999999998653
No 243
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=65.31 E-value=92 Score=28.66 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=68.9
Q ss_pred EEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc-EEEEEEcCCCCcCchHHHHHHHHHHHcCCCC-eEEEecCCC
Q 011954 271 LLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS-MHAVVVGSDMNAQTKFETELRNFVAEKKIQD-HVHFVNKTL 348 (474)
Q Consensus 271 ~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~~~ 348 (474)
..+++++.-.+.|+++.+++.++ ++|. +.+=..|.|. ...-....+.+..|+.- .|.|-|.-+
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak-----------~~p~~~~~g~~g~g~----~~hl~~~~l~~~~G~~~~~Vpy~G~~~ 143 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAK-----------ANPGKLTFGSSGPGS----SDHLAAALLAKAAGIKFTHVPYDGGAE 143 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHH-----------CSCCC-EEEESSTTS----HHHHHHHHHHHHHT---EEEE-SSHHH
T ss_pred ceEEEEeCCCccccHHHHHHHHH-----------hCCCCeEEEecCCCc----hHHHHHHHHHHHhCCceEEEEeCCccH
Confidence 45566777788999999998885 2243 4444444442 12223344556677642 233333223
Q ss_pred ChHHHHh-cCCEEEEcCCCCCCCCchHHHHHHhcCC--CEEEc---------CCC-----CcceeeeeCCceeeecCCCC
Q 011954 349 TVSPYLA-SIDVLVQNSQARGECFGRITIEAMAFQL--PVLGT---------AAG-----GTMEIVVNGTTGLLHPTGKE 411 (474)
Q Consensus 349 ~~~~~~~-~adv~v~ps~~~~E~~~~~~~EAma~G~--PvI~s---------~~~-----g~~e~v~~~~~G~l~~~~d~ 411 (474)
.+.+++. ..|+.+...- ........|. |+.++ +++ |.+++....-.|++++.+-+
T Consensus 144 ~~~allgG~vd~~~~~~~--------~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp 215 (274)
T PF03401_consen 144 ALTALLGGHVDAAFGSPG--------EALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTP 215 (274)
T ss_dssp HHHHHHTTSSSEEEEEHH--------HHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-
T ss_pred HHHHHhCCeeeEEeecHH--------HHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCC
Confidence 4444442 3555443210 1223333332 11111 111 23233333456888888761
Q ss_pred C--hHHHHHHHHHHhhCHHHHHHHHHHHH
Q 011954 412 G--VTPLANNIVKLATHVERRLTMGKKGY 438 (474)
Q Consensus 412 ~--~~~la~~i~~ll~~~~~~~~~~~~~~ 438 (474)
+ .+.|.+++.+.+++++..+.+.+.+.
T Consensus 216 ~~~~~~l~~a~~~~~~~pe~~~~~~~~g~ 244 (274)
T PF03401_consen 216 DEIVDKLADAIKKALEDPEFQEFLEKMGL 244 (274)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 1 33466666777778888777766554
No 244
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=65.02 E-value=1e+02 Score=27.38 Aligned_cols=147 Identities=7% Similarity=0.046 Sum_probs=79.1
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT 349 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (474)
...++.+| |-....+-+..|.+ -+.++.++... ...+++.+++. +++.+.-..-+
T Consensus 25 ~~~VLVVG------GG~VA~RK~~~Ll~---------~gA~VtVVap~------i~~el~~l~~~----~~i~~~~r~~~ 79 (223)
T PRK05562 25 KIKVLIIG------GGKAAFIKGKTFLK---------KGCYVYILSKK------FSKEFLDLKKY----GNLKLIKGNYD 79 (223)
T ss_pred CCEEEEEC------CCHHHHHHHHHHHh---------CCCEEEEEcCC------CCHHHHHHHhC----CCEEEEeCCCC
Confidence 34455666 44555555555544 46778888764 34566666542 35666652211
Q ss_pred hHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCccee-----eeeCCceeeecCCCCC---hHHHHHHHH
Q 011954 350 VSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI-----VVNGTTGLLHPTGKEG---VTPLANNIV 421 (474)
Q Consensus 350 ~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~-----v~~~~~G~l~~~~d~~---~~~la~~i~ 421 (474)
...+..+++++..+-. .+---.+.-+|-+.|.+|.+.+.+...++ +..+.--+-+..+-.+ ...+.+.|+
T Consensus 80 -~~dl~g~~LViaATdD-~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie 157 (223)
T PRK05562 80 -KEFIKDKHLIVIATDD-EKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVK 157 (223)
T ss_pred -hHHhCCCcEEEECCCC-HHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHH
Confidence 2345677776666541 33333445567788999988876654444 4333322222221100 345666666
Q ss_pred HHhhCHHHHHHHHHHHHHHHHH
Q 011954 422 KLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 422 ~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
.++.+.+.+.+.....|+.+++
T Consensus 158 ~~l~~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 158 NFLKKYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6665444445555556666655
No 245
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=64.95 E-value=18 Score=25.78 Aligned_cols=48 Identities=29% Similarity=0.299 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhcCcEEEEEeCCCCCC---chhhhhhcccchhccceeee
Q 011954 90 PLLLMELAFLLRGVGAEVVWITNQKPNE---PDEVIYSLEHKMLDRGVQVL 137 (474)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 137 (474)
...-.++|..|.+.|.+|+++...+... .......+.+.+...++.+.
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 3678899999999999999999554332 12223334445555566554
No 246
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=64.61 E-value=13 Score=30.50 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=28.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||+|++-. ...|-....+..++..|++.|++|.+.-.+
T Consensus 1 Mk~LIlYs-tr~GqT~kIA~~iA~~L~e~g~qvdi~dl~ 38 (175)
T COG4635 1 MKTLILYS-TRDGQTRKIAEYIASHLRESGIQVDIQDLH 38 (175)
T ss_pred CceEEEEe-cCCCcHHHHHHHHHHHhhhcCCeeeeeehh
Confidence 67777764 223444578999999999999999998644
No 247
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=64.44 E-value=17 Score=28.54 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=23.7
Q ss_pred CEEEEEecCC---CCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHEL---SLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~---~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||+|+.... .+.+ -....|+.+-+++||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~k--DTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYK--DTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT---HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCC--ChHHHHHHHHHHCCCEEEEEEcC
Confidence 6899998753 3333 35667778888999999999854
No 248
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=63.94 E-value=87 Score=31.20 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcC--CEEEEcCCCCCCCCchHHHHHHhc---CCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASI--DVLVQNSQARGECFGRITIEAMAF---QLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~a--dv~v~ps~~~~E~~~~~~~EAma~---G~P 384 (474)
.++|+-+.+ ..+..+.......|. .|......++....+... |+++.=-. -.+.-|+.+++.+.. ++|
T Consensus 6 ~iLvVDDd~----~ir~~l~~~L~~~G~--~v~~a~~~~~al~~i~~~~~~lvl~Di~-mp~~~Gl~ll~~i~~~~~~~p 78 (464)
T COG2204 6 RILVVDDDP----DIRELLEQALELAGY--EVVTAESAEEALEALSESPFDLVLLDIR-MPGMDGLELLKEIKSRDPDLP 78 (464)
T ss_pred CEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCchHHHHHHHHhhCCCCC
Confidence 455665543 356666666666663 465555554544544443 55555333 145567888876555 689
Q ss_pred EEE-cCCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 011954 385 VLG-TAAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVE 428 (474)
Q Consensus 385 vI~-s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (474)
||. |..|.+ .+.++.|-.-|+..|-+ ++.+...+.+.++...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~--~~~L~~~v~ral~~~~ 124 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFD--LDRLLAIVERALELRE 124 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCC--HHHHHHHHHHHHHHhh
Confidence 865 566654 34456678889999998 9999999999987544
No 249
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=63.62 E-value=15 Score=31.37 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|+||+|.++- .++++|++.|.+.|++|.|+-..
T Consensus 1 ~~~IL~IDNyD------SFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 1 MMMILLIDNYD------SFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred CceEEEEECcc------chHHHHHHHHHHcCCceEEEECC
Confidence 46799999865 48999999999999999999765
No 250
>PLN02206 UDP-glucuronate decarboxylase
Probab=63.62 E-value=38 Score=33.72 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=24.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+.|||++.. |..-.=..|++.|.++|++|.++..
T Consensus 118 ~~~kILVTG------atGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTG------GAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CCCEEEEEC------cccHHHHHHHHHHHHCcCEEEEEeC
Confidence 357887664 3335567788889999999998763
No 251
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=63.17 E-value=18 Score=26.56 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=37.1
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
++++|.|..+..-....+++.++++|++-.+.... ..+.......+|+++....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 67888886444323478899999999754444444 5566777788999998765
No 252
>PRK00170 azoreductase; Reviewed
Probab=62.83 E-value=17 Score=31.57 Aligned_cols=40 Identities=13% Similarity=-0.020 Sum_probs=30.2
Q ss_pred cCEEEEEecCCCCC-Chh-HHHHHHHHHHHhc--CcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLS-GGP-LLLMELAFLLRGV--GAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~g-G~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (474)
||||++|....... |.. ..+..+.+.|.+. |++|.++-..
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 47899998776665 544 5666778888888 9999988754
No 253
>PRK00211 sulfur relay protein TusC; Validated
Probab=62.69 E-value=18 Score=28.40 Aligned_cols=41 Identities=5% Similarity=-0.065 Sum_probs=30.8
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
||||+|+....|.|.. .+-..+++-++...+.+|.++....
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFIDD 42 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEhh
Confidence 5679999997777653 3567777888888888998887543
No 254
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=61.95 E-value=1.1e+02 Score=27.52 Aligned_cols=81 Identities=7% Similarity=0.021 Sum_probs=56.3
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC-----CC---hHHHHhcCCEEEEcCCCCCCCCchHHHHH
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT-----LT---VSPYLASIDVLVQNSQARGECFGRITIEA 378 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-----~~---~~~~~~~adv~v~ps~~~~E~~~~~~~EA 378 (474)
+.-++++-|+...........+++.+.+.|++..-++..+. ++ ..+++..-++.|.++. -..+.++.-|
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~---fHm~RA~~ia 157 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQR---FHCERALFIA 157 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCH---HHHHHHHHHH
Confidence 55678888875443334566788889999998877777642 22 2344555557777774 5678888889
Q ss_pred HhcCCCEEEcCC
Q 011954 379 MAFQLPVLGTAA 390 (474)
Q Consensus 379 ma~G~PvI~s~~ 390 (474)
-..|+.+++...
T Consensus 158 ~~~Gi~~~~~~a 169 (239)
T PRK10834 158 LHMGIQAQCYAV 169 (239)
T ss_pred HHcCCceEEEeC
Confidence 999998877643
No 255
>PRK13054 lipid kinase; Reviewed
Probab=61.92 E-value=20 Score=33.53 Aligned_cols=41 Identities=27% Similarity=0.151 Sum_probs=29.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|+||++++|.+ +.+|+.+....+.+.|.+.|+++.+.....
T Consensus 1 ~~~~~~~~i~N--~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 1 MTFPKSLLILN--GKSAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CCCceEEEEEC--CCccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 56788877776 334445677788888999999988766443
No 256
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=61.75 E-value=54 Score=25.33 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++.+++-+=+. ..+..++.+++++.+ ...++.+++. ..|+.+..+. ...-.-.+.+++..|++
T Consensus 24 ~~~~v~~v~d~------~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 24 PDFEVVAVCDP------DPERAEAFAEKYGIP-------VYTDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKH 88 (120)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTSE-------EESSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhccc-------chhHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCE
Confidence 67777633332 355666777888764 2245778887 6888888776 45555678899999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 89 v~~EK 93 (120)
T PF01408_consen 89 VLVEK 93 (120)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98865
No 257
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=61.47 E-value=64 Score=26.87 Aligned_cols=67 Identities=9% Similarity=-0.068 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC-CChHHHHhcCCEEE
Q 011954 283 KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT-LTVSPYLASIDVLV 361 (474)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~~~~~~~~adv~v 361 (474)
=.+.+.++|+..+.. ..-+.-.++-|++ ....+...+++.|. .|...|.. ..-..+.++||-|+
T Consensus 89 ~Dv~laIDame~~~~-------~~iD~~vLvSgD~------DF~~Lv~~lre~G~--~V~v~g~~~~ts~~L~~acd~FI 153 (160)
T TIGR00288 89 VDVRMAVEAMELIYN-------PNIDAVALVTRDA------DFLPVINKAKENGK--ETIVIGAEPGFSTALQNSADIAI 153 (160)
T ss_pred ccHHHHHHHHHHhcc-------CCCCEEEEEeccH------hHHHHHHHHHHCCC--EEEEEeCCCCChHHHHHhcCeEE
Confidence 468889999877643 2256666777776 46666667777774 78888854 45567889999988
Q ss_pred EcC
Q 011954 362 QNS 364 (474)
Q Consensus 362 ~ps 364 (474)
.-.
T Consensus 154 ~L~ 156 (160)
T TIGR00288 154 ILG 156 (160)
T ss_pred eCC
Confidence 643
No 258
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.31 E-value=1.6e+02 Score=28.49 Aligned_cols=164 Identities=12% Similarity=0.167 Sum_probs=96.0
Q ss_pred EecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcC-CCCcC-chHHHHHHHHHHHcCCCCeEEEecC----C-
Q 011954 275 IINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGS-DMNAQ-TKFETELRNFVAEKKIQDHVHFVNK----T- 347 (474)
Q Consensus 275 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~-g~~~~-~~~~~~l~~~~~~~~l~~~v~~~g~----~- 347 (474)
|.|..+.-+-.....+...+..+ .++.++|+-- |-+.+ ....+++.+..+..+ +++|.|.=. +
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKk---------e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKK---------ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIGQA 228 (483)
T ss_pred eEecccccchHHHHHHHHHHHHh---------cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEeccccHh
Confidence 55677777888888888877755 6788887754 32222 124556666666665 467777642 1
Q ss_pred --CChHHHHhcCCE--EEEcCCCC--CCCCchHHHHHHhcCCCEEEcCCCCcceeeeeC----CceeeecCCCCChHHHH
Q 011954 348 --LTVSPYLASIDV--LVQNSQAR--GECFGRITIEAMAFQLPVLGTAAGGTMEIVVNG----TTGLLHPTGKEGVTPLA 417 (474)
Q Consensus 348 --~~~~~~~~~adv--~v~ps~~~--~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~----~~G~l~~~~d~~~~~la 417 (474)
++...+=...|+ .+++-..- ..|..++.. .+.++|||--.+|..-|=++.- -.+-+.--+| ++.|.
T Consensus 229 ae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGD--i~glv 304 (483)
T KOG0780|consen 229 AEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGD--IEGLV 304 (483)
T ss_pred HHHHHHHHHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHHhcccc--HHHHH
Confidence 223333344565 45543310 223334444 4578999988777543322211 1244455677 99999
Q ss_pred HHHHHHhh-CH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 418 NNIVKLAT-HV-ERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 418 ~~i~~ll~-~~-~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
+.+.++.. |. ++.+.+ -.-+|+...+.+++..+..
T Consensus 305 ek~~ev~~~d~~el~~kl-------~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 305 EKVQEVGKDDAKELVEKL-------KQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHhhhhHHHHHHHH-------HhCCccHHHHHHHHHHHHh
Confidence 99998873 32 222222 2346999988888877654
No 259
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=60.89 E-value=1.7e+02 Score=28.68 Aligned_cols=87 Identities=9% Similarity=0.041 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchH---HH-HHHhcCCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRI---TI-EAMAFQLP 384 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~---~~-EAma~G~P 384 (474)
-.+.|++.. .+.-++++++++. .+ -..+++..++..+|+++..+- ..-++. .+ +|+.--..
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~--~~---~~l~el~~~l~~~DvVissTs---a~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGA--EA---VALEELLEALAEADVVISSTS---APHPIITREMVERALKIRKR 267 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCC--ee---ecHHHHHHhhhhCCEEEEecC---CCccccCHHHHHHHHhcccC
Confidence 466677653 5677788888861 11 123789999999999998764 333333 33 34444444
Q ss_pred EEEcCCCCcceeeee---CCceeeecCCC
Q 011954 385 VLGTAAGGTMEIVVN---GTTGLLHPTGK 410 (474)
Q Consensus 385 vI~s~~~g~~e~v~~---~~~G~l~~~~d 410 (474)
.+..|.+-.+++-.+ -.+-++++-+|
T Consensus 268 ~livDiavPRdie~~v~~l~~v~l~~iDD 296 (414)
T COG0373 268 LLIVDIAVPRDVEPEVGELPNVFLYTIDD 296 (414)
T ss_pred eEEEEecCCCCCCccccCcCCeEEEehhh
Confidence 677777766665321 12345665443
No 260
>PRK10494 hypothetical protein; Provisional
Probab=60.72 E-value=85 Score=28.63 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCCCcC-chHHHHHHHHHHHcCCCCeEEEe-cCC----C---ChHHHHhcCCEEEEcCCCCCCCCchHHH
Q 011954 306 VPSMHAVVVGSDMNAQ-TKFETELRNFVAEKKIQDHVHFV-NKT----L---TVSPYLASIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~-~~~~~~l~~~~~~~~l~~~v~~~-g~~----~---~~~~~~~~adv~v~ps~~~~E~~~~~~~ 376 (474)
++..++++.|+..... ....+..++.+.++|++..-++. +.. + ...+++....+++++| .-..+.+..
T Consensus 119 ~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTs---a~Hm~RA~~ 195 (259)
T PRK10494 119 NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTS---ASHLPRAMI 195 (259)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECC---HHHHHHHHH
Confidence 4778899998643222 22456668888899998654443 321 2 2444555556888888 467888888
Q ss_pred HHHhcCCCEEEcCCC
Q 011954 377 EAMAFQLPVLGTAAG 391 (474)
Q Consensus 377 EAma~G~PvI~s~~~ 391 (474)
.+-..|+.++...++
T Consensus 196 ~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 196 FFQQEGLNPLPAPAN 210 (259)
T ss_pred HHHHcCCceeecCCc
Confidence 888899999877654
No 261
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=60.15 E-value=22 Score=29.32 Aligned_cols=38 Identities=18% Similarity=-0.011 Sum_probs=30.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
||||+++... ..|..+.++..++..|...|++|.+...
T Consensus 1 M~ki~Ivy~S-~tGnTe~vA~~i~~~l~~~~~~~~~~~~ 38 (151)
T COG0716 1 MMKILIVYGS-RTGNTEKVAEIIAEELGADGFEVDIDIR 38 (151)
T ss_pred CCeEEEEEEc-CCCcHHHHHHHHHHHhccCCceEEEeec
Confidence 5788888753 3377789999999999999999955543
No 262
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=59.99 E-value=19 Score=29.23 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=38.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC-CCchhhhhhcccchhccceeeeehhcHHHHh--hhc
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP-NEPDEVIYSLEHKMLDRGVQVLSAKGEKAIN--TAL 149 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 149 (474)
++||||||+... ..-......+.+.+... ++.+.+.... .............+...|+.+-.. ..+.+. ...
T Consensus 1 ~~~kVLFVC~gN--~cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~-~~k~i~~~~~~ 75 (139)
T COG0394 1 MMMKVLFVCTGN--ICRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGH-RSKQLTEEDFD 75 (139)
T ss_pred CCceEEEEcCCC--cccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCc-cCccCchhhhh
Confidence 478999999622 11123455555555543 3444442211 111111111233445666666431 112121 225
Q ss_pred CCCEEEEcc
Q 011954 150 NADLVVLNT 158 (474)
Q Consensus 150 ~~DiV~~~~ 158 (474)
.+|+|+.-+
T Consensus 76 ~~DlIitmd 84 (139)
T COG0394 76 EFDLIITMD 84 (139)
T ss_pred hCCEEEEeC
Confidence 799999876
No 263
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=59.09 E-value=2.1e+02 Score=29.15 Aligned_cols=119 Identities=8% Similarity=0.008 Sum_probs=61.0
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEE-E----ecccccCcchHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFA-I----INSVSRGKGQDLFL 289 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~-~----vgrl~~~Kg~~~ll 289 (474)
+.+.+.+.+.+....+++.+|.+..-.+..-.+-... -.+++++..++.+..++. . .| ....|.+..+
T Consensus 128 ~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGDDi~a~-----i~~~~~~~~~p~~~pVi~v~TpgF~G--s~~~Gyd~a~ 200 (515)
T TIGR01286 128 KNMVDGLQNCYALYKPKMIAVSTTCMAEVIGDDLNAF-----IGNAKKEGFIPDDFPVPFAHTPSFVG--SHITGYDNMF 200 (515)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhccHHHH-----HHHHHHhcCCCCCCceEEeeCCCCcc--cHHHHHHHHH
Confidence 3344444444443345666776666555443332222 233455555554433332 1 24 3357888888
Q ss_pred HHHHHHHHHHHHh-ccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE
Q 011954 290 HSFYESLQLIREK-KLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV 341 (474)
Q Consensus 290 ~a~~~l~~~~~~~-~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (474)
+++-+....-... ..+.++-.+-|+|+- +..+....+++++.+.+|+.-++
T Consensus 201 ~ail~~l~~~~~~~~~~~~~~~VNii~g~-~~~~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 201 KGILEYFTKGSMDDKVVGSNGKINIIPGF-ETYIGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHHHHhhcccccccCCCCCeEEEECCC-CCCchhHHHHHHHHHHcCCCeEE
Confidence 8876543211100 001134456677632 11123678999999999996554
No 264
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.80 E-value=1.5e+02 Score=27.21 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=64.3
Q ss_pred EEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc---------CchHHHHHHHHHHHcCCCCeEE
Q 011954 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA---------QTKFETELRNFVAEKKIQDHVH 342 (474)
Q Consensus 272 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~---------~~~~~~~l~~~~~~~~l~~~v~ 342 (474)
.++.+|-- .-...+.+++.++++.+ -..+++..|.-.++ ..+....+++.++++|++--..
T Consensus 28 ~~~iaGPC-sie~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te 97 (266)
T PRK13398 28 KIIIAGPC-AVESEEQMVKVAEKLKE---------LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTE 97 (266)
T ss_pred EEEEEeCC-cCCCHHHHHHHHHHHHH---------cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEe
Confidence 34455544 34567888888887765 34567777732111 1235567888888998853333
Q ss_pred EecCCCChHHHHhcCCEEEEcCCCCCCCCchHHH-HHHhcCCCEEEcCC
Q 011954 343 FVNKTLTVSPYLASIDVLVQNSQARGECFGRITI-EAMAFQLPVLGTAA 390 (474)
Q Consensus 343 ~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~-EAma~G~PvI~s~~ 390 (474)
+.. ..++..+...+|++-.+|. +..-..++ ++...|+||+.++-
T Consensus 98 ~~d-~~~~~~l~~~vd~~kIga~---~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 98 VMD-TRDVEEVADYADMLQIGSR---NMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred eCC-hhhHHHHHHhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 333 2345555556899999996 44444455 44567999998863
No 265
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=58.75 E-value=79 Score=29.94 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
+.++-+.+. ..+..++.++++++. -..+++.++++. .|+++..+.. .-.+. .++.|+..|++|+
T Consensus 30 ~~~vav~d~------~~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp~-~~H~e-~~~~AL~aGkhVl 95 (342)
T COG0673 30 LELVAVVDR------DPERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATPN-ALHAE-LALAALEAGKHVL 95 (342)
T ss_pred eEEEEEecC------CHHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCCC-hhhHH-HHHHHHhcCCEEE
Confidence 455545444 466788889988875 223577888876 5888887762 33444 4589999999998
Q ss_pred EcC
Q 011954 387 GTA 389 (474)
Q Consensus 387 ~s~ 389 (474)
+-.
T Consensus 96 ~EK 98 (342)
T COG0673 96 CEK 98 (342)
T ss_pred EcC
Confidence 864
No 266
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=58.72 E-value=2.2e+02 Score=29.09 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=50.9
Q ss_pred EEEEEEcCCCC--cCchHHHHHHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH--hcC
Q 011954 309 MHAVVVGSDMN--AQTKFETELRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAM--AFQ 382 (474)
Q Consensus 309 ~~l~i~G~g~~--~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm--a~G 382 (474)
-.+-|+|.-+. ..+....+++++.+.+|+.-++.|.+. .+++.. +..|++-|.++. | .|..+.+.| -+|
T Consensus 159 ~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~---~-~g~~~A~~Le~~fG 233 (511)
T TIGR01278 159 PSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYR---E-IGLMAAEYLKEKFG 233 (511)
T ss_pred CcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEech---H-HHHHHHHHHHHHhC
Confidence 45777876431 122356899999999999888888764 255544 367777777664 2 566777777 679
Q ss_pred CCEEEc
Q 011954 383 LPVLGT 388 (474)
Q Consensus 383 ~PvI~s 388 (474)
+|.+..
T Consensus 234 iP~i~~ 239 (511)
T TIGR01278 234 QPYITT 239 (511)
T ss_pred CCcccc
Confidence 998753
No 267
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=58.59 E-value=73 Score=31.12 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=25.6
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+++|+|+++. |....=..+++.|.++|++|.+++..
T Consensus 58 ~~~~kVLVtG------atG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 58 PKDVTVLVVG------ATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCEEEEEC------CCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 4567887764 33345567778888899999998854
No 268
>PRK09271 flavodoxin; Provisional
Probab=58.31 E-value=22 Score=29.62 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|||+++... ..|..+..+..+++.|.+.|++|.+.-
T Consensus 1 mkv~IvY~S-~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 578777753 346668999999999999999988664
No 269
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=57.81 E-value=31 Score=34.26 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=42.7
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
|+||||++.. | ..-+.|+..|++.|++|.++.....+.... +.... ..+..........+.+..++|
T Consensus 1 ~~~kVLvlG~-----G--~re~al~~~l~~~g~~v~~~~~~~Npg~~~----~a~~~--~~~~~~d~e~l~~~~~~~~id 67 (435)
T PRK06395 1 MTMKVMLVGS-----G--GREDAIARAIKRSGAILFSVIGHENPSIKK----LSKKY--LFYDEKDYDLIEDFALKNNVD 67 (435)
T ss_pred CceEEEEECC-----c--HHHHHHHHHHHhCCCeEEEEECCCChhhhh----cccce--eecCCCCHHHHHHHHHHhCCC
Confidence 5789999653 2 356778888899998777775422211100 01000 012223344556677789999
Q ss_pred EEEEcc
Q 011954 153 LVVLNT 158 (474)
Q Consensus 153 iV~~~~ 158 (474)
+|++..
T Consensus 68 ~Vi~~~ 73 (435)
T PRK06395 68 IVFVGP 73 (435)
T ss_pred EEEECC
Confidence 999864
No 270
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=57.70 E-value=25 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=25.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||++..... .+ .....++.+.|.+.|++|.++...
T Consensus 1 k~i~l~vtGs--~~-~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGS--IA-AYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SS--GG-GGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECH--HH-HHHHHHHHHHHhhCCCEEEEEECC
Confidence 5677766521 12 244889999999999999988854
No 271
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=57.60 E-value=1.6e+02 Score=27.91 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.2
Q ss_pred EEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|..|.+ ...||.+ -.+..|++.|.++|+.|.|++..++
T Consensus 51 vIsVGN-i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 51 VIVVGN-ITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred EEEEcC-eeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 444443 5556665 6788999999999999999995543
No 272
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=57.49 E-value=2e+02 Score=28.23 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=81.7
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc---cCcchHHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS---RGKGQDLFLHS 291 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~---~~Kg~~~ll~a 291 (474)
+.+.+.+.+......+++.+|.+..-.+..-.+-... -.+++++.++ +++.+....+. ...|.+..+++
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v-----~~~~~~~~~~---~vi~v~t~gf~g~~~~~G~~~a~~a 144 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAV-----AKEASKELGI---PVIPVNCEGFRGVSQSLGHHIANDA 144 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHH-----HHHHHHhhCC---CEEEEeCCCeeCCcccHHHHHHHHH
Confidence 3344444333333335566666665555544333222 1234444432 23333333322 34578878777
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGE 369 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E 369 (474)
+.+....-.+ ....++-.+.|+|.... +....+++++.+++|+..+..+.+. .+++.. +..|.+-|..+. .
T Consensus 145 l~~~l~~~~~-~~~~~~~~VNiig~~~~--~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~niv~~~--~- 217 (406)
T cd01967 145 ILDHLVGTKE-PEEKTPYDVNIIGEYNI--GGDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKLNLVHCS--R- 217 (406)
T ss_pred HHHHhcCCCC-cCCCCCCeEEEEecccc--chhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCEEEEECh--H-
Confidence 7654321000 00113446778886421 1256889999999999888778764 255554 455555554432 1
Q ss_pred CCchHHHHHHh--cCCCEEE
Q 011954 370 CFGRITIEAMA--FQLPVLG 387 (474)
Q Consensus 370 ~~~~~~~EAma--~G~PvI~ 387 (474)
++..+.+.|. +|+|.+.
T Consensus 218 -~~~~~a~~L~~r~GiP~~~ 236 (406)
T cd01967 218 -SMNYLAREMEERYGIPYME 236 (406)
T ss_pred -HHHHHHHHHHHhhCCCEEE
Confidence 3455555543 7899875
No 273
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=57.44 E-value=1.9e+02 Score=28.15 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=67.6
Q ss_pred HHHHHhcCCCCCCEEEEEecccc--cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc
Q 011954 258 EHVRESLGVRDDDLLFAIINSVS--RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK 335 (474)
Q Consensus 258 ~~~r~~~~~~~~~~~i~~vgrl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~ 335 (474)
.+++++++. +++.+..+.+. ...|.+..++++.+..- ++.. +..+-.+-|+|..+... ....+++++.+++
T Consensus 98 ~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~~~~~--~~~~-~~~~~~VNiiG~~~~~~-~d~~el~~lL~~~ 170 (398)
T PF00148_consen 98 RELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALAEQLV--KPPE-EKKPRSVNIIGGSPLGP-GDLEELKRLLEEL 170 (398)
T ss_dssp HHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHHHHHT--TGTT-TTSSSEEEEEEESTBTH-HHHHHHHHHHHHT
T ss_pred HHhhcccCC---cEEEEECCCccCCccchHHHHHHHHHhhcc--cccc-cCCCCceEEecCcCCCc-ccHHHHHHHHHHC
Confidence 456666654 45555566662 24566666666554431 1111 11234677788654321 3678999999999
Q ss_pred CCCCeEEEecCCCChHHH--HhcCCEEEEcCCCCCCCCchHHHHHHhc--CCCEEEc
Q 011954 336 KIQDHVHFVNKTLTVSPY--LASIDVLVQNSQARGECFGRITIEAMAF--QLPVLGT 388 (474)
Q Consensus 336 ~l~~~v~~~g~~~~~~~~--~~~adv~v~ps~~~~E~~~~~~~EAma~--G~PvI~s 388 (474)
|+.-+..+.+.. .+.++ +..|++-+..+. + .+..+.|.|.- |+|.+..
T Consensus 171 Gi~v~~~~~~~~-t~~e~~~~~~A~lniv~~~---~-~~~~~a~~L~e~~giP~~~~ 222 (398)
T PF00148_consen 171 GIEVNAVFPGGT-TLEEIRKAPEAALNIVLCP---E-GGPYAAEWLEERFGIPYLYF 222 (398)
T ss_dssp TEEEEEEEETTB-CHHHHHHGGGSSEEEESSC---C-HHHHHHHHHHHHHT-EEEEE
T ss_pred CCceEEEeCCCC-CHHHHHhCCcCcEEEEecc---c-hhhHHHHHHHHHhCCCeeec
Confidence 997666665643 44444 445666666554 2 22237777764 8999884
No 274
>PRK07206 hypothetical protein; Provisional
Probab=57.36 E-value=58 Score=32.06 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=41.5
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCch-hhhhhcccchhccceeeeehhcHHHHhhhcCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPD-EVIYSLEHKMLDRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
||++|+++.... .-..+++++++.|+++.+++........ .......... ..+..........+.+..++
T Consensus 1 ~~k~~liv~~~~-------~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~~ 71 (416)
T PRK07206 1 MMKKVVIVDPFS-------SGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFI--EVIINGDIDDLVEFLRKLGP 71 (416)
T ss_pred CCCeEEEEcCCc-------hHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccch--hhhcCCCHHHHHHHHHHcCC
Confidence 467889888631 1245788999999999998855432110 0000000000 00000112234455667889
Q ss_pred CEEEEcc
Q 011954 152 DLVVLNT 158 (474)
Q Consensus 152 DiV~~~~ 158 (474)
|.|+..+
T Consensus 72 d~vi~~~ 78 (416)
T PRK07206 72 EAIIAGA 78 (416)
T ss_pred CEEEECC
Confidence 9999764
No 275
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=57.34 E-value=33 Score=34.27 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=43.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchh--ccc---eeeeehhcHHHHhhh
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKML--DRG---VQVLSAKGEKAINTA 148 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 148 (474)
++|||++.. | .....+++++++.|++|.++....+....... +.+... ..+ -.+.....+..+.+.
T Consensus 2 ~k~iLi~g~-----g--~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~--~ad~~~~~~~~~~~~~y~d~~~l~~~a~~ 72 (451)
T PRK08591 2 FDKILIANR-----G--EIALRIIRACKELGIKTVAVHSTADRDALHVQ--LADEAVCIGPAPSKKSYLNIPAIISAAEI 72 (451)
T ss_pred cceEEEECC-----C--HHHHHHHHHHHHcCCeEEEEcChhhccCCCHh--HCCEEEEeCCCCcccccCCHHHHHHHHHH
Confidence 678999853 2 46888999999999999998754332111000 000000 000 011122334556667
Q ss_pred cCCCEEEEcc
Q 011954 149 LNADLVVLNT 158 (474)
Q Consensus 149 ~~~DiV~~~~ 158 (474)
.++|.||...
T Consensus 73 ~~id~I~p~~ 82 (451)
T PRK08591 73 TGADAIHPGY 82 (451)
T ss_pred hCCCEEEECC
Confidence 8899998754
No 276
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=57.21 E-value=21 Score=33.30 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=27.2
Q ss_pred cCEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+|||.-+. ..||.. ....+|+.+|++.|+.|.++-.
T Consensus 3 ~~~~iai~---~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 3 KLRQIAFY---GKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred cceEEEEE---CCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 45544443 567775 5689999999999999999953
No 277
>PRK06703 flavodoxin; Provisional
Probab=57.08 E-value=22 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=28.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
||||+++... ..|..+..+..+++.|.+.|++|.+.-.
T Consensus 1 mmkv~IiY~S-~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYAS-MSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEEC-CCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 3567766643 3466678999999999999999988753
No 278
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.00 E-value=46 Score=24.89 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEE
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
||.+....++-+.+.+.|.+..+.
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 566778888889999999998888
No 279
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.87 E-value=1.7e+02 Score=28.01 Aligned_cols=107 Identities=9% Similarity=0.046 Sum_probs=63.5
Q ss_pred CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC---------chHHHHHHHHHHHcCCCC
Q 011954 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ---------TKFETELRNFVAEKKIQD 339 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~---------~~~~~~l~~~~~~~~l~~ 339 (474)
+...++.+|- ..-.+-+.+++.++.+.+ -..+++--|...++. .+....+++..++.|+.
T Consensus 99 ~~~l~vIAGP-CsIEs~eq~l~~A~~lk~---------~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~- 167 (352)
T PRK13396 99 NHPVVVVAGP-CSVENEEMIVETAKRVKA---------AGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG- 167 (352)
T ss_pred CCeEEEEEeC-CcccCHHHHHHHHHHHHH---------cCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc-
Confidence 3444555663 334567778888887755 355666555432221 12345666667788874
Q ss_pred eEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHH-HhcCCCEEEcC
Q 011954 340 HVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEA-MAFQLPVLGTA 389 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EA-ma~G~PvI~s~ 389 (474)
-+.=.-..+++..+...+|++=.+|.. ...++ ++++ ...|+||+.+.
T Consensus 168 ~~tev~d~~~v~~~~~~~d~lqIga~~-~~n~~--LL~~va~t~kPVllk~ 215 (352)
T PRK13396 168 IITEVMDAADLEKIAEVADVIQVGARN-MQNFS--LLKKVGAQDKPVLLKR 215 (352)
T ss_pred EEEeeCCHHHHHHHHhhCCeEEECccc-ccCHH--HHHHHHccCCeEEEeC
Confidence 222222334555555559999999973 44444 4554 56799999875
No 280
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=56.69 E-value=43 Score=31.58 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=42.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEE-EeCCCCCCc---hhhhhhcccchhccceeeeehhc-----HHHH
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVW-ITNQKPNEP---DEVIYSLEHKMLDRGVQVLSAKG-----EKAI 145 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 145 (474)
|||+|+... .+.....++|.+.||+|.. +|....... ......+.......+++++.... ....
T Consensus 1 mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~ 73 (313)
T TIGR00460 1 LRIVFFGTP-------TFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPL 73 (313)
T ss_pred CEEEEECCC-------HHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHH
Confidence 578888642 3556666777788898764 543221110 00111233344456776654322 2334
Q ss_pred hhhcCCCEEEEcc
Q 011954 146 NTALNADLVVLNT 158 (474)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (474)
....+||++++..
T Consensus 74 l~~~~~Dliv~~~ 86 (313)
T TIGR00460 74 VRELKPDVIVVVS 86 (313)
T ss_pred HHhhCCCEEEEcc
Confidence 5668999998864
No 281
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=56.42 E-value=45 Score=31.38 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=42.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh----hhhhcccchhccceeeeehhc-----HHHH
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE----VIYSLEHKMLDRGVQVLSAKG-----EKAI 145 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~ 145 (474)
|||+|+... .+.....++|.+.||++..+....+..... ....+.......+++++.... ....
T Consensus 1 mkIvf~G~~-------~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFMGTP-------EFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAE 73 (309)
T ss_pred CEEEEECCC-------HHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHH
Confidence 688888652 356666677777789877444322211100 011223344556676654322 2344
Q ss_pred hhhcCCCEEEEcc
Q 011954 146 NTALNADLVVLNT 158 (474)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (474)
....+||++++-.
T Consensus 74 l~~~~~Dliv~~~ 86 (309)
T PRK00005 74 LAALNADVIVVVA 86 (309)
T ss_pred HHhcCcCEEEEeh
Confidence 5668999998863
No 282
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=56.34 E-value=2.2e+02 Score=28.48 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=74.7
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc--cCcchHHHHHHHHHHHHHHHHhcc---
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS--RGKGQDLFLHSFYESLQLIREKKL--- 304 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~--~~Kg~~~ll~a~~~l~~~~~~~~~--- 304 (474)
+++.+|.+..-.+..-.+-... -.+++++.++ +++.+....+. ...|.+..++++.+......+...
T Consensus 122 P~~I~V~ttC~~~lIGdDi~~v-----~~e~~~~~~~---~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~ 193 (456)
T TIGR01283 122 PPAVFVYSTCVPGLIGDDLEAV-----CKAAAEKTGI---PVIPVDSEGFYGSKNLGNKLACDALLKHVIGTREPEPIPV 193 (456)
T ss_pred CCEEEEECCChHHHhcCCHHHH-----HHHHHHHhCC---CEEEEECCCCccchhHHHHHHHHHHHHHHhccCCcccccc
Confidence 4555666555455443332222 1233444433 23333333332 346777777777654321000000
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHH--HhcCCEEEEcCCCCCCCCchHHHHHH--h
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPY--LASIDVLVQNSQARGECFGRITIEAM--A 380 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~--~~~adv~v~ps~~~~E~~~~~~~EAm--a 380 (474)
...+-.+-|+|..... ....+++++.+++|+..+..+.+.. .+.++ +..|.+-|..+. ..+..+.+.| -
T Consensus 194 ~~~~~~VNiiG~~~~~--~d~~el~~lL~~~Gl~v~~~~~~~~-s~eei~~~~~A~lniv~~~----~~~~~~a~~L~e~ 266 (456)
T TIGR01283 194 GTTVHDINLIGEFNVA--GEFWHVKPLLEKLGIRVLATITGDS-RYAEVQTAHRAKLNMVQCS----KSMINLARKMEEK 266 (456)
T ss_pred cCCCCcEEEEcCCCCc--ccHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHhcccCcEEEEECH----hHHHHHHHHHHHH
Confidence 0013467788864322 1356999999999998777777753 34444 333444443332 1345677777 5
Q ss_pred cCCCEEE
Q 011954 381 FQLPVLG 387 (474)
Q Consensus 381 ~G~PvI~ 387 (474)
+|+|.+.
T Consensus 267 ~GiP~~~ 273 (456)
T TIGR01283 267 YGIPYFE 273 (456)
T ss_pred cCCCEEe
Confidence 7999885
No 283
>PRK06851 hypothetical protein; Provisional
Probab=56.15 E-value=2e+02 Score=27.85 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=28.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
..++.+++. .+-.|-...+..++..+.+.|++|.++...
T Consensus 29 ~~~~~il~G-~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~ 67 (367)
T PRK06851 29 ANRIFILKG-GPGTGKSTLMKKIGEEFLEKGYDVEFLHCS 67 (367)
T ss_pred cceEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 346777774 222344688999999999999999987644
No 284
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=56.09 E-value=86 Score=24.71 Aligned_cols=75 Identities=12% Similarity=-0.040 Sum_probs=41.6
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcC-cEEEEEeCCCCCCchhhhhhcccchhcc-ceeeeehhcHHHHhhhcC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVG-AEVVWITNQKPNEPDEVIYSLEHKMLDR-GVQVLSAKGEKAINTALN 150 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 150 (474)
||+.++....+. |-+ ....++++++.+.| ++|.++...++.... ...... ...+.....+..+..+.+
T Consensus 1 m~~~Ivvt~ppY-g~q~a~~A~~fA~all~~gh~~v~iFly~DgV~~~-------~~~~~Pa~dEf~l~~~~~~l~~~~g 72 (126)
T COG1553 1 MKYTIVVTGPPY-GTESAFSALRFAEALLEQGHELVRLFLYQDGVHNG-------NKGQKPASDEFNLIQAWLELLTEQG 72 (126)
T ss_pred CeEEEEEecCCC-ccHHHHHHHHHHHHHHHcCCeEEEEEEeecccccc-------ccCCCCcccccchHHHHHHHHHHcC
Confidence 567777664444 433 67899999999986 678888754332110 010111 112222334455556677
Q ss_pred CCEEEEc
Q 011954 151 ADLVVLN 157 (474)
Q Consensus 151 ~DiV~~~ 157 (474)
.++-.|-
T Consensus 73 v~v~~C~ 79 (126)
T COG1553 73 VPVKLCV 79 (126)
T ss_pred CcEeeeH
Confidence 7776664
No 285
>PRK05568 flavodoxin; Provisional
Probab=56.04 E-value=27 Score=28.21 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=28.5
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|+++... ..|..+..+..+++.+.+.|++|.++...
T Consensus 2 ~~~~IvY~S-~~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 2 KKINIIYWS-GTGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456666642 44666788999999999999999988643
No 286
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=55.88 E-value=23 Score=30.68 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=30.5
Q ss_pred CEEEEEecCCCC-CChh-HHHHHHHHHHHhcC-cEEEEEeCCC
Q 011954 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVG-AEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G-~~V~v~~~~~ 114 (474)
||||+|.....+ ++.. +....+++++.+.| ++|.++-...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~ 43 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYE 43 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 789999987666 5553 66788999999999 9999997544
No 287
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=55.88 E-value=1.3e+02 Score=27.44 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=41.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhcc-ceee----eehhcHHHHhhhc
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDR-GVQV----LSAKGEKAINTAL 149 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~ 149 (474)
|+|+++. |.. .-..+++.|.+.||+|.+.+...... ..+... +..+ .....+..+....
T Consensus 1 m~ILvlG------GT~-egr~la~~L~~~g~~v~~s~~t~~~~---------~~~~~~g~~~v~~g~l~~~~l~~~l~~~ 64 (256)
T TIGR00715 1 MTVLLMG------GTV-DSRAIAKGLIAQGIEILVTVTTSEGK---------HLYPIHQALTVHTGALDPQELREFLKRH 64 (256)
T ss_pred CeEEEEe------chH-HHHHHHHHHHhCCCeEEEEEccCCcc---------ccccccCCceEEECCCCHHHHHHHHHhc
Confidence 4677664 322 37889999999999999887443211 111111 1112 1223355677778
Q ss_pred CCCEEEEc-ccchh
Q 011954 150 NADLVVLN-TAVAG 162 (474)
Q Consensus 150 ~~DiV~~~-~~~~~ 162 (474)
++|+|+-- ++++.
T Consensus 65 ~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 65 SIDILVDATHPFAA 78 (256)
T ss_pred CCCEEEEcCCHHHH
Confidence 89988643 34443
No 288
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=55.87 E-value=23 Score=30.74 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=29.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHh-cCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (474)
|||+++.... .|..++.+..+++.+.+ .|++|.++...
T Consensus 2 ~kilIvy~S~-~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSM-YGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 5898888644 24456788888999988 99999998854
No 289
>PLN00016 RNA-binding protein; Provisional
Probab=55.62 E-value=15 Score=35.65 Aligned_cols=40 Identities=30% Similarity=0.243 Sum_probs=28.8
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++|+||+++.+.+- ....=..+++.|.+.||+|++++...
T Consensus 51 ~~~~VLVt~~~~Ga--tG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGG--HAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCC--ceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 35789988655433 23456677888889999999998543
No 290
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=55.12 E-value=34 Score=30.23 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=30.0
Q ss_pred CEEEEEecCCCC-CChh-HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 75 ~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
+||+++...... +|.+ .-+..-...|++.|++|+++++.+.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~ 44 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIP 44 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589988865444 4554 3455667889999999999997653
No 291
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=55.01 E-value=14 Score=27.49 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=39.3
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
-|.++|.|..++.-....+++..+++|++..+.-. ...+...+...+|+++....
T Consensus 4 IL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~-~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 4 ILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC-AVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE-EecccccCCCcccEEEEehH
Confidence 36788988766555678899999999986332221 24567778888999997654
No 292
>PRK05920 aromatic acid decarboxylase; Validated
Probab=54.73 E-value=28 Score=30.36 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=28.1
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++|||++-.. ||. .....++++.|.+.|++|.++....
T Consensus 2 ~~krIllgIT----Gsiaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 2 KMKRIVLAIT----GASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCCEEEEEEe----CHHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 3577776654 333 2568899999999999999998654
No 293
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=54.65 E-value=37 Score=28.98 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAE 106 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~ 106 (474)
|||+|+.+ |.......+..+|.+.+++
T Consensus 1 mrI~~~~S-----g~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGS-----GSGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEES-----SSSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEEc-----CCCHHHHHHHHHHHhCCCC
Confidence 78998875 2236777888899999987
No 294
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=53.92 E-value=67 Score=25.36 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcC-CEEE
Q 011954 283 KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASI-DVLV 361 (474)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~a-dv~v 361 (474)
.|....++++++ ...+|+|+..+.... +....+..++++.+++ +.+.+..+++-...... .+.+
T Consensus 33 ~G~~~v~kaikk------------gkakLVilA~D~s~~-~i~~~~~~lc~~~~Vp--~~~~~tk~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 33 KGTNETTKAVER------------GIAKLVVIAEDVDPE-EIVAHLPLLCEEKKIP--YVYVPSKKDLGKAAGLEVGAAA 97 (122)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCChH-HHHHHHHHHHHHcCCC--EEEECCHHHHHHHhCCCCCeEE
Confidence 377778887742 467888777653111 1357899999999986 78888778888877765 3444
Q ss_pred EcCCCCCCCCchHHHH
Q 011954 362 QNSQARGECFGRITIE 377 (474)
Q Consensus 362 ~ps~~~~E~~~~~~~E 377 (474)
..-. .+|+.-.+++
T Consensus 98 vaI~--d~g~a~~~~~ 111 (122)
T PRK04175 98 AAIV--DAGKAKELVE 111 (122)
T ss_pred EEEe--chhhhHHHHH
Confidence 4433 4555544443
No 295
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=53.91 E-value=40 Score=35.67 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=42.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEE-EEeCCCCCCchhhhhhcccchhccceeeeehhc-----HHHHhhh
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV-WITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKG-----EKAINTA 148 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 148 (474)
|||+|+.. +.+..-..++|.+.||+|. |+|....+........+.......+++++.... .....+.
T Consensus 1 mkivf~g~-------~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T PRK08125 1 MKAVVFAY-------HDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRE 73 (660)
T ss_pred CeEEEECC-------CHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHh
Confidence 57887753 2345555577777899988 666332211111111233444556776654322 2234556
Q ss_pred cCCCEEEEcc
Q 011954 149 LNADLVVLNT 158 (474)
Q Consensus 149 ~~~DiV~~~~ 158 (474)
.+||++++-.
T Consensus 74 ~~~D~iv~~~ 83 (660)
T PRK08125 74 LAPDVIFSFY 83 (660)
T ss_pred cCCCEEEEcc
Confidence 7899887653
No 296
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=53.78 E-value=31 Score=29.87 Aligned_cols=38 Identities=24% Similarity=0.023 Sum_probs=27.6
Q ss_pred ccCEEEEEecCCCCCChh-HH-HHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGP-LL-LMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~-~~-~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
..+||++-.. ||.. .. ..++++.|.+.|++|.++....
T Consensus 4 ~~k~IllgVT----Gsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLT----GSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEc----CHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 3567776554 3333 44 5899999999999999988554
No 297
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=53.64 E-value=38 Score=30.02 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
....+++|+...-..+.-.++.+.+++..+ +-+.|.|..+.+ -..+|.+++||.
T Consensus 27 gtdai~vGGS~~vt~~~~~~~v~~ik~~~l-Pvilfp~~~~~i---~~~aDa~l~~sv 80 (223)
T TIGR01768 27 GTDAILIGGSQGVTYEKTDTLIEALRRYGL-PIILFPSNPTNV---SRDADALFFPSV 80 (223)
T ss_pred CCCEEEEcCCCcccHHHHHHHHHHHhccCC-CEEEeCCCcccc---CcCCCEEEEEEe
Confidence 455677776432222234455566667665 456677765443 355999999986
No 298
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=53.53 E-value=31 Score=29.96 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=28.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|++.++..-+-.|-...+.+|+.+|++.|+.|.++-..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 566666643433444578999999999999999888644
No 299
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=53.33 E-value=1.3e+02 Score=25.40 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=39.5
Q ss_pred EEEEEeccccc-CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc--------CchHHHHHHHHHHHcCCCCeE
Q 011954 271 LLFAIINSVSR-GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA--------QTKFETELRNFVAEKKIQDHV 341 (474)
Q Consensus 271 ~~i~~vgrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~--------~~~~~~~l~~~~~~~~l~~~v 341 (474)
..-+++||+.| .+|+..+++-+.+. -+--++++|+...+ ..+-...+++...+.++..++
T Consensus 4 ~rgv~~GRFqP~H~GHl~vi~~al~~-----------vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~r~ 72 (172)
T COG1056 4 KRGVYFGRFQPLHTGHLYVIKRALSK-----------VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDLRV 72 (172)
T ss_pred eEEEEEeccCCccHhHHHHHHHHHHh-----------CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCceE
Confidence 45678999998 88998888766543 35567788874322 122334556566666654444
Q ss_pred EEec
Q 011954 342 HFVN 345 (474)
Q Consensus 342 ~~~g 345 (474)
.+..
T Consensus 73 ~~~~ 76 (172)
T COG1056 73 YLRP 76 (172)
T ss_pred EEEe
Confidence 4444
No 300
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=53.03 E-value=98 Score=25.71 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=44.4
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc---hHHHHHHHHHHHcCCCCeEEEecC
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT---KFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~---~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
...+.++|- +.......+..+... -+..+.+++......+ +..+..++.+.+.| ..+.+.
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~--------~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~-- 64 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAK--------FGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT-- 64 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHH--------TTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE--
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHH--------cCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE--
Confidence 467888993 222333444333332 2456888887431111 23334445555554 466666
Q ss_pred CCChHHHHhcCCEEEEcCC
Q 011954 347 TLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~ 365 (474)
+++.+.+..+|++...+.
T Consensus 65 -~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 65 -DDIEEALKGADVVYTDRW 82 (158)
T ss_dssp -SSHHHHHTT-SEEEEESS
T ss_pred -eCHHHhcCCCCEEEEcCc
Confidence 688999999999887664
No 301
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=52.64 E-value=90 Score=30.47 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=31.7
Q ss_pred cCEEEEEecC-CCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
.+||+++... ...|...++...++..+...|.+|.++++..
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~ 228 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEG 228 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCc
Confidence 4689988753 2334445888999999999999999999864
No 302
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=52.63 E-value=75 Score=27.39 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=41.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCc--EEEEEeCCCCCCchhhhhhcccchhccceeeeeh--h----------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGA--EVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA--K---------- 140 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------- 140 (474)
|||+++.+ |.+..+..+.+++.+.+. +|.++....+... ........++++... .
T Consensus 1 ~riail~s-----g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~------~~~~A~~~gip~~~~~~~~~~~~~~~~~ 69 (190)
T TIGR00639 1 KRIVVLIS-----GNGSNLQAIIDACKEGKIPASVVLVISNKPDAY------GLERAAQAGIPTFVLSLKDFPSREAFDQ 69 (190)
T ss_pred CeEEEEEc-----CCChhHHHHHHHHHcCCCCceEEEEEECCccch------HHHHHHHcCCCEEEECccccCchhhhhH
Confidence 57888875 334667788888887665 6665433322211 122234445554321 1
Q ss_pred cHHHHhhhcCCCEEEEcc
Q 011954 141 GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~ 158 (474)
......+..++|++++..
T Consensus 70 ~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 123445568999998864
No 303
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=52.59 E-value=74 Score=29.55 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh--h---hhhcccchhccceeeeehh-------------cHHHHhhhc
Q 011954 88 GGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE--V---IYSLEHKMLDRGVQVLSAK-------------GEKAINTAL 149 (474)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 149 (474)
|=...+..|...|.++||.|-|+.-++...+.. . ...+.......++.+-+.. ..-.++...
T Consensus 63 GKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAa 142 (323)
T COG1703 63 GKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAA 142 (323)
T ss_pred chHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhc
Confidence 335889999999999999999999543332210 0 0001111112333332211 223556678
Q ss_pred CCCEEEEcccchhh
Q 011954 150 NADLVVLNTAVAGK 163 (474)
Q Consensus 150 ~~DiV~~~~~~~~~ 163 (474)
.||+|++.+...+.
T Consensus 143 G~DvIIVETVGvGQ 156 (323)
T COG1703 143 GYDVIIVETVGVGQ 156 (323)
T ss_pred CCCEEEEEecCCCc
Confidence 99999999865544
No 304
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=52.53 E-value=37 Score=29.29 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=30.0
Q ss_pred CEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||++++.....++-. ..+...++.+.+.|++|.++...
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 6899999877766654 55666777888899999988754
No 305
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.53 E-value=1.1e+02 Score=23.70 Aligned_cols=45 Identities=29% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEEEEcc
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLVVLNT 158 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~ 158 (474)
.-+..++..|++.||+|.++-...+. ..+.......+||+|-...
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~-----------------------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPP-----------------------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-H-----------------------HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCH-----------------------HHHHHHHhcCCCcEEEEEc
Confidence 34788889999999999988543211 2233344567899987654
No 306
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=52.34 E-value=72 Score=27.80 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=29.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
..+|++++-.-+.||=. +-.++.|...|++|+|+....+
T Consensus 49 ~~~v~vlcG~GnNGGDG---~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGDG---LVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHHH---HHHHHHHHhCCCceEEEEeCCC
Confidence 35699999877666643 4457789999999999985544
No 307
>PRK08462 biotin carboxylase; Validated
Probab=51.93 E-value=48 Score=33.03 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=44.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccch-hccce---eeeehhcHHHHhhhc
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKM-LDRGV---QVLSAKGEKAINTAL 149 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~ 149 (474)
++|||++.. | .....+++++++.|++|.++....+........ -.+.+ ...+. .+.....+..+.+..
T Consensus 4 ~k~ili~~~-----g--~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~-ad~~~~~~~~~~~~~y~~~~~l~~~~~~~ 75 (445)
T PRK08462 4 IKRILIANR-----G--EIALRAIRTIQEMGKEAIAIYSTADKDALYLKY-ADAKICIGGAKSSESYLNIPAIISAAEIF 75 (445)
T ss_pred CCEEEEECC-----c--HHHHHHHHHHHHcCCCEEEEechhhcCCchhhh-CCEEEEeCCCchhcccCCHHHHHHHHHHc
Confidence 578998874 2 357789999999999999887544332111100 00000 00000 112233456667778
Q ss_pred CCCEEEEcc
Q 011954 150 NADLVVLNT 158 (474)
Q Consensus 150 ~~DiV~~~~ 158 (474)
++|+||...
T Consensus 76 ~~D~i~pg~ 84 (445)
T PRK08462 76 EADAIFPGY 84 (445)
T ss_pred CCCEEEECC
Confidence 999999864
No 308
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=51.90 E-value=2.8e+02 Score=28.35 Aligned_cols=76 Identities=20% Similarity=0.133 Sum_probs=49.5
Q ss_pred cEEEEEEcCCC--CcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh--c
Q 011954 308 SMHAVVVGSDM--NAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMA--F 381 (474)
Q Consensus 308 ~~~l~i~G~g~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma--~ 381 (474)
+-.+-|+|.-+ ...+....+++++.+.+|+.-++.+.+.. +++.. +..|++-|..+. | .|..+.|.|. +
T Consensus 158 ~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~---~-~g~~~A~~Lee~f 232 (519)
T PRK02910 158 RPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYR---E-IGESAARYLEREF 232 (519)
T ss_pred CCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCH---H-HHHHHHHHHHHHh
Confidence 34677888632 12233678899999999998888886643 44433 345566555443 2 5667777765 7
Q ss_pred CCCEEEc
Q 011954 382 QLPVLGT 388 (474)
Q Consensus 382 G~PvI~s 388 (474)
|+|.+.+
T Consensus 233 GiP~i~~ 239 (519)
T PRK02910 233 GQPYVKT 239 (519)
T ss_pred CCccccc
Confidence 8998763
No 309
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.89 E-value=2.5e+02 Score=27.79 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=85.0
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc---cCcchHHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS---RGKGQDLFLHS 291 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~---~~Kg~~~ll~a 291 (474)
+.+.+.+.+......+++.+|.+..-.+..-.+-... -.+++++.++ +++.+....+. ...|.+..+++
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v-----~~~~~~~~~~---pvi~v~t~gf~g~~~~~G~~~a~~a 146 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESV-----VEELEDEIGI---PVVALHCEGFKGKHWRSGFDAAFHG 146 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHH-----HHHHHHhhCC---CEEEEeCCccCCccHhHHHHHHHHH
Confidence 3344444444433345667777666555544333222 2334444443 23333333332 24688888777
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCC-c--CchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMN-A--QTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQA 366 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~-~--~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~ 366 (474)
+.+....-++. ...+-.+-|+|..+. + ......+++++.+++|+.-+..+.|.. .+.++.+ .|.+-|..+.
T Consensus 147 l~~~~~~~~~~--~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~-~~~ei~~~~~A~lniv~~~- 222 (426)
T cd01972 147 ILRHLVPPQDP--TKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGC-SVEELERASEAAANVTLCL- 222 (426)
T ss_pred HHHHhcCCCCC--CCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHhcccCCEEEEECh-
Confidence 76543210000 012225677786532 1 123568899999999998777777632 4444433 3444444332
Q ss_pred CCCCCchHHHHHH--hcCCCEEEcC
Q 011954 367 RGECFGRITIEAM--AFQLPVLGTA 389 (474)
Q Consensus 367 ~~E~~~~~~~EAm--a~G~PvI~s~ 389 (474)
.++..+.+.| -+|+|.+...
T Consensus 223 ---~~g~~~a~~Lee~~GiP~~~~~ 244 (426)
T cd01972 223 ---DLGYYLGAALEQRFGVPEIKAP 244 (426)
T ss_pred ---hHHHHHHHHHHHHhCCCeEecC
Confidence 2567778887 4899988653
No 310
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=51.78 E-value=42 Score=32.09 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=24.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++.|+|++... ..-.=..+++.|.+.|++|.++...
T Consensus 2 ~~~k~ilItGa------tG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGH------TGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred cCCCEEEEECC------CChhHHHHHHHHHHCCCEEEEEeCC
Confidence 45677766653 2234467888898999999887643
No 311
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=51.77 E-value=25 Score=31.67 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=28.5
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
|+||+...+.-. ..-+..|+++|.+.| +|.|+.+.....
T Consensus 1 M~ILltNDDGi~---a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 1 MKILLTNDDGIH---SPGIRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred CeEEEECCCCCC---CHhHHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 689988775321 144888999999988 999999765543
No 312
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=51.75 E-value=55 Score=32.93 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=43.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc-chhc-cceeeeehhcHHHHhhhcCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH-KMLD-RGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (474)
.+|||++.. | .....+++++++.|+++.++....+.........-.. .+.. ..-.+.....+..+.+..++
T Consensus 2 ~~kvLi~~~-----g--eia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~ 74 (472)
T PRK07178 2 IKKILIANR-----G--EIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGC 74 (472)
T ss_pred CcEEEEECC-----c--HHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCC
Confidence 468998863 2 5688999999999999999886544321111000000 0000 00011222245556667899
Q ss_pred CEEEEc
Q 011954 152 DLVVLN 157 (474)
Q Consensus 152 DiV~~~ 157 (474)
|.||..
T Consensus 75 D~I~pg 80 (472)
T PRK07178 75 DALHPG 80 (472)
T ss_pred CEEEeC
Confidence 999974
No 313
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=51.67 E-value=31 Score=29.39 Aligned_cols=34 Identities=12% Similarity=-0.058 Sum_probs=25.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|||+++.... +.=..+++...++||+|+.++...
T Consensus 1 mKIaiIgAsG------~~Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASG------KAGSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCc------hhHHHHHHHHHhCCCeeEEEEeCh
Confidence 7899988633 344567777889999999999654
No 314
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=51.66 E-value=79 Score=23.93 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=28.9
Q ss_pred ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceee
Q 011954 349 TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIV 397 (474)
Q Consensus 349 ~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v 397 (474)
++...+..+|+++..+-. .+--....-+|-+.|+||-+.|.+...+++
T Consensus 53 ~~~~~l~~~~lV~~at~d-~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 53 EFEEDLDGADLVFAATDD-PELNEAIYADARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp S-GGGCTTESEEEE-SS--HHHHHHHHHHHHHTTSEEEETT-CCCCSEE
T ss_pred hHHHHHhhheEEEecCCC-HHHHHHHHHHHhhCCEEEEECCCcCCCeEE
Confidence 344567778877766641 222233444666689999999988766654
No 315
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=51.40 E-value=64 Score=30.20 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=29.7
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
..+||+++... .+++..++.++...|.+|.++++..-
T Consensus 146 ~g~kva~vGD~------~~v~~S~~~~~~~~g~~v~~~~P~~~ 182 (302)
T PRK14805 146 SKVKLAYVGDG------NNVTHSLMYGAAILGATMTVICPPGH 182 (302)
T ss_pred CCcEEEEEcCC------CccHHHHHHHHHHcCCEEEEECCchh
Confidence 35789999651 25789999999999999999997653
No 316
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=51.33 E-value=33 Score=26.53 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=25.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
-+|||++.. | -...+.++.+++.|+++.++....
T Consensus 2 ikkvLIanr------G-eia~r~~ra~r~~Gi~tv~v~s~~ 35 (110)
T PF00289_consen 2 IKKVLIANR------G-EIAVRIIRALRELGIETVAVNSNP 35 (110)
T ss_dssp SSEEEESS-------H-HHHHHHHHHHHHTTSEEEEEEEGG
T ss_pred CCEEEEECC------C-HHHHHHHHHHHHhCCcceeccCch
Confidence 467777664 2 348889999999999988887544
No 317
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=51.20 E-value=2.2e+02 Score=26.97 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=30.8
Q ss_pred EEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
|..|.+ +..||.. -.+..|++.|+++|..+-+++..++.
T Consensus 49 VI~VGN-ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 49 VICVGN-LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEEEcc-EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 666655 6667775 67999999999999999999965544
No 318
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.19 E-value=33 Score=31.69 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=88.2
Q ss_pred CEEEEEeccc--ccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--------C
Q 011954 270 DLLFAIINSV--SRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--------D 339 (474)
Q Consensus 270 ~~~i~~vgrl--~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--------~ 339 (474)
..+-+..|.= +.+.|...++.++..+..... . +++-+...++- --..+..+.++.|-. +
T Consensus 226 ~viaLLPGsR~pea~~nl~~il~slcal~~~~a-------~--vvfw~ai~~~l--pl~~l~~l~e~~gWq~~ad~~~kd 294 (412)
T COG4370 226 PVIALLPGSRVPEAQTNLAVILGSLCALPAMFA-------L--VVFWAAIAPEL--PLLLLWTLEERQGWQPLADRFGKD 294 (412)
T ss_pred ceEEecCCCCChHHHhhHHHHHHHHhhhHHHHH-------H--HHHHhccCcCC--CHHHHHHHHHhcCcchhhhhhccC
Confidence 3344445543 347788888887766644221 1 12222221111 123333444333221 2
Q ss_pred eEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCccee---ee-----eCCceeeecCCCC
Q 011954 340 HVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI---VV-----NGTTGLLHPTGKE 411 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~---v~-----~~~~G~l~~~~d~ 411 (474)
+..+.=.+....+++..+|+.+ ..-|...=.|.-.|+|||....-|..-. .+ =|..=.++.+
T Consensus 295 nc~l~lsqqsfadiLH~adaal-------gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--- 364 (412)
T COG4370 295 NCSLWLSQQSFADILHAADAAL-------GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--- 364 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHHHH-------HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC---
Confidence 3444444567778888888744 2235556678899999999875443211 00 0223334444
Q ss_pred ChHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011954 412 GVTPLANNIVK-LATHVERRLTMGKKGYERVKDRFLEHHMSQRI 454 (474)
Q Consensus 412 ~~~~la~~i~~-ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 454 (474)
..+-++.+.+ ++.|++.....+.++.+++-+-=...++++.+
T Consensus 365 -~aq~a~~~~q~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l 407 (412)
T COG4370 365 -EAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQAGAARRIAEEL 407 (412)
T ss_pred -chhhHHHHHHHHhcChHHHHHHHhcchhhccCcchHHHHHHHH
Confidence 2345555555 99999999999989988876543333444433
No 319
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=51.15 E-value=1.1e+02 Score=29.25 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC-cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP-SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL 348 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (474)
++.++.+|- .- | ...++++.++ + +++++-+-+. ..+..++.++++|++ ...
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~~~-----------~~~~eLvaV~d~------~~erA~~~A~~~gi~-------~y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFAAA-----------PERFELAGILAQ------GSERSRALAHRLGVP-------LYC 54 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHHhC-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCC-------ccC
Confidence 456777775 22 3 2355666543 4 6788766554 356677888888753 135
Q ss_pred ChHHHHhcCCEEE--EcCCCCCCCC-chHHHHHHhcCCCEEEcC
Q 011954 349 TVSPYLASIDVLV--QNSQARGECF-GRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 349 ~~~~~~~~adv~v--~ps~~~~E~~-~~~~~EAma~G~PvI~s~ 389 (474)
++.+++...|+.+ .|+.. ..+. .-...+|+..|+.|++-.
T Consensus 55 ~~eell~d~Di~~V~ipt~~-P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAI-VGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCC-CCccHHHHHHHHHhCCCeEEEcC
Confidence 6777777666544 44320 1122 235668999999999875
No 320
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.06 E-value=76 Score=25.95 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceee
Q 011954 324 FETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIV 397 (474)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v 397 (474)
-.+++.+.++++++ .|+|.-+..-....-..+...+.-+- .+.--.-++|-.-.|=-||+.|.|=...++
T Consensus 13 Vk~~i~r~A~r~~~--~v~~Van~~~~~~~~~~i~~v~V~~g--~DaaD~~Iv~~a~~gDlVVT~Di~LA~~ll 82 (150)
T COG1671 13 VKDEIYRVAERMGL--KVTFVANFPHRVPPSPEIRTVVVDAG--FDAADDWIVNLAEKGDLVVTADIPLASLLL 82 (150)
T ss_pred hHHHHHHHHHHhCC--eEEEEeCCCccCCCCCceeEEEecCC--cchHHHHHHHhCCCCCEEEECchHHHHHHH
Confidence 56777888888876 46666643221111122333333333 455566677777777778888877655555
No 321
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=50.99 E-value=27 Score=32.37 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=34.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLV 154 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (474)
||||++.... ..=..|.+.|.+.|++|..++... +.+........+....+||+|
T Consensus 1 MriLI~GasG------~lG~~l~~~l~~~~~~v~~~~r~~-------------------~dl~d~~~~~~~~~~~~pd~V 55 (286)
T PF04321_consen 1 MRILITGASG------FLGSALARALKERGYEVIATSRSD-------------------LDLTDPEAVAKLLEAFKPDVV 55 (286)
T ss_dssp EEEEEETTTS------HHHHHHHHHHTTTSEEEEEESTTC-------------------S-TTSHHHHHHHHHHH--SEE
T ss_pred CEEEEECCCC------HHHHHHHHHHhhCCCEEEEeCchh-------------------cCCCCHHHHHHHHHHhCCCeE
Confidence 7888886432 455678888999999988875331 111122334556667789988
Q ss_pred EEc
Q 011954 155 VLN 157 (474)
Q Consensus 155 ~~~ 157 (474)
+-.
T Consensus 56 in~ 58 (286)
T PF04321_consen 56 INC 58 (286)
T ss_dssp EE-
T ss_pred ecc
Confidence 544
No 322
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=50.72 E-value=83 Score=30.01 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
.+||+++... .+++..++..+...|.+|+++++..-
T Consensus 154 glkv~~vGD~------~~v~~Sl~~~~~~~g~~v~~~~P~~~ 189 (338)
T PRK02255 154 DCKVVFVGDA------TQVCVSLMFIATKMGMDFVHFGPKGY 189 (338)
T ss_pred CCEEEEECCC------chHHHHHHHHHHhCCCEEEEECCCcc
Confidence 5789999752 36899999999999999999997643
No 323
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=50.68 E-value=94 Score=23.74 Aligned_cols=78 Identities=5% Similarity=0.158 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEc
Q 011954 284 GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQN 363 (474)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~p 363 (474)
|.+.++++++. ..+.|+|+-.+... +....+.++++.++++ .+.+ +..+++...+....+.+..
T Consensus 21 G~~~v~~aik~------------gk~~lVI~A~D~s~--~~kkki~~~~~~~~vp-~~~~-~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 21 GYNKCEEAIKK------------KKVYLIIISNDISE--NSKNKFKNYCNKYNIP-YIEG-YSKEELGNAIGRDEIKILG 84 (104)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCCH--hHHHHHHHHHHHcCCC-EEEe-cCHHHHHHHhCCCCeEEEE
Confidence 55666666642 46788877765322 3678888888877764 3333 6668888888876666655
Q ss_pred CCCCCCCCchHHHHHH
Q 011954 364 SQARGECFGRITIEAM 379 (474)
Q Consensus 364 s~~~~E~~~~~~~EAm 379 (474)
-. .++|.-.+++.+
T Consensus 85 i~--d~g~a~~l~~~~ 98 (104)
T PRK05583 85 VK--DKNMAKKLLKLW 98 (104)
T ss_pred Ee--ChHHHHHHHHHH
Confidence 55 677777777654
No 324
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=50.64 E-value=94 Score=26.91 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=67.6
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCC-eEEEecCC--CChHHHHhcCC
Q 011954 282 GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQD-HVHFVNKT--LTVSPYLASID 358 (474)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~~--~~~~~~~~~ad 358 (474)
.|-...|.+|+.-+.+ + .+-.++++|..+ .....+++.++..|-.. +-+|+|-. +-...-+..=|
T Consensus 43 ~kT~~~L~~A~~~i~~-i-------~~~~ILfVgtk~----~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pd 110 (196)
T TIGR01012 43 RKTDERLRVAAKFLVR-I-------EPEDILVVSARI----YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPE 110 (196)
T ss_pred HHHHHHHHHHHHHHHH-h-------hCCeEEEEecCH----HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCC
Confidence 3444555555544432 1 134678888765 24455666776665321 12466621 11122355667
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 359 VLVQNSQARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 359 v~v~ps~~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
++++... ..-...+.||...|+|+|+- |.-.-++.| -+.+|.+|+ .-.-...+..++.
T Consensus 111 lliv~dp---~~~~~Av~EA~~l~IP~Iai~DTn~dp~~v-----dypIP~Ndd-s~~Si~li~~lla 169 (196)
T TIGR01012 111 VVVVTDP---RADHQALKEASEVGIPIVALCDTDNPLRYV-----DLVIPTNNK-GRHSLALIYWLLA 169 (196)
T ss_pred EEEEECC---ccccHHHHHHHHcCCCEEEEeeCCCCCccC-----CEEECCCCc-hHHHHHHHHHHHH
Confidence 7776543 33457899999999999985 333445544 245665553 3444444445543
No 325
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=50.64 E-value=25 Score=26.28 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
-|+++|.|..+..-....+++..++.|++-+|.- ....++..+...+|+++.++.
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~-~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ-CRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE-ecHHHHhhhcCCCCEEEECCc
Confidence 4788898864433236788888898888533333 233466666678899987664
No 326
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=50.51 E-value=20 Score=26.76 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=18.4
Q ss_pred ccchH--HHHHHHHHHHHHHHHhhhc
Q 011954 15 KRWQL--MILVLFTLSTAMLFFIRST 38 (474)
Q Consensus 15 ~~~~~--~~~~~~~~~~~~~~~~~~~ 38 (474)
|.++| |+++|+++|+++++++...
T Consensus 12 kgFTLvEMLiVLlIISiLlLl~iPNl 37 (107)
T COG4537 12 KGFTLVEMLIVLLIISILLLLFIPNL 37 (107)
T ss_pred ccccHHHHHHHHHHHHHHHHHHccch
Confidence 46665 6788888999999887653
No 327
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=50.08 E-value=2.7e+02 Score=27.59 Aligned_cols=147 Identities=11% Similarity=0.016 Sum_probs=75.3
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEE-ecccc--cCcchHHHHHHHHHHHHHHHHhccCC
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAI-INSVS--RGKGQDLFLHSFYESLQLIREKKLQV 306 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~-vgrl~--~~Kg~~~ll~a~~~l~~~~~~~~~~~ 306 (474)
+++.+|.+..-.+..-.+-... -.++++++....+..++.+ ...+. ...|.+..++++-+... ....+.
T Consensus 82 p~~I~v~~tC~~~liGdDi~~v-----~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~---~~~~~~ 153 (428)
T cd01965 82 PDVIGVLTTCLTETIGDDVAGF-----IKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLA---KPSEVK 153 (428)
T ss_pred CCEEEEECCcchhhcCCCHHHH-----HHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHh---cccCCC
Confidence 4555666555455443332221 2334443321123333332 22222 24677777776654321 110001
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-----------------CCCChHHHHh--cCCEEEEcCCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-----------------KTLTVSPYLA--SIDVLVQNSQAR 367 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-----------------~~~~~~~~~~--~adv~v~ps~~~ 367 (474)
.+-.+.|+|..+... ....+++++.+++|+..+..+.- .-..+.++-+ .|.+-|..+.
T Consensus 154 ~~~~VNlig~~~~~~-~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~-- 230 (428)
T cd01965 154 KNGKVNLLPGFPLTP-GDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGE-- 230 (428)
T ss_pred CCCeEEEECCCCCCc-cCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEECh--
Confidence 344577777543222 14689999999999987776631 0134444443 4444443332
Q ss_pred CCCCchHHHHHHh--cCCCEEEcC
Q 011954 368 GECFGRITIEAMA--FQLPVLGTA 389 (474)
Q Consensus 368 ~E~~~~~~~EAma--~G~PvI~s~ 389 (474)
-.+..+.|+|. +|+|-+...
T Consensus 231 --~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 231 --YSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred --hhhHHHHHHHHHHHCCCeeecC
Confidence 25667777765 899988775
No 328
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=50.08 E-value=37 Score=29.05 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=26.7
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+|||++... |+. .....++++.|.+.|++|.++....
T Consensus 1 ~k~Ill~vt----Gsiaa~~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 1 MKNILLAVS----GSIAAYKAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CCEEEEEEe----ChHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 356766654 332 3558899999999999999887543
No 329
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=49.89 E-value=42 Score=33.48 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=26.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|||++.. | .....+++++++.|++|.++...
T Consensus 2 ~kkili~g~-----g--~~~~~~~~aa~~lG~~vv~~~~~ 34 (449)
T TIGR00514 2 LDKILIANR-----G--EIALRILRACKELGIKTVAVHST 34 (449)
T ss_pred cceEEEeCC-----C--HHHHHHHHHHHHcCCeEEEEECh
Confidence 678988853 2 56888999999999999998754
No 330
>PRK11914 diacylglycerol kinase; Reviewed
Probab=49.80 E-value=49 Score=31.00 Aligned_cols=46 Identities=22% Similarity=0.149 Sum_probs=32.5
Q ss_pred ccccccCEEEEEecCCCC-CChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 69 LNFMKSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++.|.++|+++|.+..+- |.+.+...++.+.|.+.|+++.++....
T Consensus 3 ~~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 3 LRRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred cCcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 445667888887765443 3335677788899999999988766443
No 331
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=49.42 E-value=69 Score=30.01 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=29.8
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
...||+++... .+.+..++..+...|.+|.++++..-
T Consensus 147 ~g~~v~~vGd~------~~v~~Sl~~~l~~~g~~v~~~~P~~~ 183 (304)
T TIGR00658 147 KGVKVVYVGDG------NNVCNSLMLAGAKLGMDVVVATPEGY 183 (304)
T ss_pred CCcEEEEEeCC------CchHHHHHHHHHHcCCEEEEECCchh
Confidence 45789988652 26899999999999999999997643
No 332
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=49.34 E-value=96 Score=27.97 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=67.3
Q ss_pred cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCC-eEEEecC--CCChHHHHhcC
Q 011954 281 RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQD-HVHFVNK--TLTVSPYLASI 357 (474)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~--~~~~~~~~~~a 357 (474)
-.|-...|..|+.-+.. +. ..-.++++|..+ .....+++.+...|-.. +=+|+|- .+.+...+..=
T Consensus 51 L~kT~~~L~~Aa~~i~~-i~------~~~~Il~Vstr~----~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P 119 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAA-IE------NPADVVVVSSRP----YGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEP 119 (249)
T ss_pred HHHHHHHHHHHHHHHHH-Hh------CCCcEEEEEcCH----HHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCC
Confidence 34555666666655533 32 123456777764 24556666676665321 1134542 23333445566
Q ss_pred CEEEEcCCCCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 358 DVLVQNSQARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 358 dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
|++|+... -.-...+.||...|+|+|+- |+-..++.| -+.+|.+|+ .-.-...|..++
T Consensus 120 ~llIV~Dp---~~d~qAI~EA~~lnIPvIal~DTds~p~~V-----Dy~IP~Ndd-s~~SI~li~~lL 178 (249)
T PTZ00254 120 RLLIVTDP---RTDHQAIREASYVNIPVIALCDTDSPLEYV-----DIAIPCNNR-GKESIALMYWLL 178 (249)
T ss_pred CEEEEeCC---CcchHHHHHHHHhCCCEEEEecCCCCcccC-----ceeeCCCCc-hHHHHHHHHHHH
Confidence 77776542 33457899999999999985 343445554 245555553 333334444444
No 333
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=49.33 E-value=1.3e+02 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+.-..||+++..+|++|++++...
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHHHCCCEEEEEecCc
Confidence 678899999999999999999653
No 334
>PRK13556 azoreductase; Provisional
Probab=48.96 E-value=40 Score=29.48 Aligned_cols=41 Identities=17% Similarity=0.035 Sum_probs=29.2
Q ss_pred cCEEEEEecCCCC--CChh-HHHHHHHHHHHhc--CcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSL--SGGP-LLLMELAFLLRGV--GAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~--gG~~-~~~~~l~~~L~~~--G~~V~v~~~~~ 114 (474)
|||||+|...... ++.. .....+++.+.+. |++|.++-...
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~ 46 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 46 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4789999987654 4443 4566677777765 89999988553
No 335
>PRK09273 hypothetical protein; Provisional
Probab=48.73 E-value=25 Score=30.53 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=31.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||+++.......--+.....|...|.+.||+|.=+...
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 789999876554444578889999999999999877754
No 336
>PRK09004 FMN-binding protein MioC; Provisional
Probab=48.63 E-value=34 Score=28.04 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=26.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
.||+++.. ..-|-.+.+...+++.+.+.|++|.++.
T Consensus 2 ~~i~I~yg-S~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 2 ADITLISG-STLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CeEEEEEE-cCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 35666643 2335557899999999999999998763
No 337
>PRK05569 flavodoxin; Provisional
Probab=48.30 E-value=41 Score=27.10 Aligned_cols=38 Identities=21% Similarity=0.066 Sum_probs=27.5
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+||+++... ..|..+..+..+++.+.+.|++|.+....
T Consensus 2 ~ki~iiY~S-~tGnT~~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 2 KKVSIIYWS-CGGNVEVLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred CeEEEEEEC-CCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 467776643 23444788899999999999998877643
No 338
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=48.15 E-value=36 Score=31.75 Aligned_cols=41 Identities=15% Similarity=-0.037 Sum_probs=30.0
Q ss_pred cccCEEEEEecCCCC-CCh-hHHHHHHHHHHHhcCcEEEEEeC
Q 011954 72 MKSKLVLLVSHELSL-SGG-PLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~-gG~-~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|.++||+++....+. .-. -......+++|.+.||+|..+..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 457899999864443 111 25678899999999999988753
No 339
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=48.01 E-value=1.4e+02 Score=23.70 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCc
Q 011954 327 ELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTT 402 (474)
Q Consensus 327 ~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~ 402 (474)
...+..++ +. .|.+.... +++.+.+..+|+++..+. ..+.-.+++++ -++-+|++...|...+-.+ .+.
T Consensus 10 ~~~~~l~~-~~--~v~~~~~~~~~~~~~~l~~~d~ii~~~~---~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~ 82 (133)
T PF00389_consen 10 EEIERLEE-GF--EVEFCDSPSEEELAERLKDADAIIVGSG---TPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKER 82 (133)
T ss_dssp HHHHHHHH-TS--EEEEESSSSHHHHHHHHTTESEEEESTT---STBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHT
T ss_pred HHHHHHHC-Cc--eEEEeCCCCHHHHHHHhCCCeEEEEcCC---CCcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhC
Confidence 33344444 43 67777743 668889999999997653 35777888888 8999999988887654211 235
Q ss_pred eeeecCCC-CChHHHHHHH
Q 011954 403 GLLHPTGK-EGVTPLANNI 420 (474)
Q Consensus 403 G~l~~~~d-~~~~~la~~i 420 (474)
|+.+.... ...++.|+..
T Consensus 83 gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 83 GIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TSEEEE-TTTTHHHHHHHH
T ss_pred eEEEEEeCCcCCcchhccc
Confidence 55553321 1144555544
No 340
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=47.95 E-value=48 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=28.2
Q ss_pred CEEEEEecCCCCCCh-hHHHHHHHHHHHhcC---cEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVG---AEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G---~~V~v~~~~~ 114 (474)
|+|+++....+.+.. ......++......| ++|.|+....
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~ 44 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGD 44 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEch
Confidence 578888875554444 477888888888999 9999988543
No 341
>PRK14982 acyl-ACP reductase; Provisional
Probab=47.72 E-value=2.5e+02 Score=26.86 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=56.7
Q ss_pred ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCccee---eee-----CCceeeecCCCCChH-HHHHH
Q 011954 349 TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI---VVN-----GTTGLLHPTGKEGVT-PLANN 419 (474)
Q Consensus 349 ~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~---v~~-----~~~G~l~~~~d~~~~-~la~~ 419 (474)
++.+.+..+|+++..+-. .+. .++.+.....|.+..|.+-.+++ +.. -+.|++-.|+| ++ ++.+.
T Consensus 208 ~l~~~l~~aDiVv~~ts~-~~~---~~I~~~~l~~~~~viDiAvPRDVd~~v~~~~V~v~~gG~V~~p~~--vd~~l~~~ 281 (340)
T PRK14982 208 SLEEALPEADIVVWVASM-PKG---VEIDPETLKKPCLMIDGGYPKNLDTKVQGPGIHVLKGGIVEHSLD--IDWKIMEI 281 (340)
T ss_pred hHHHHHccCCEEEECCcC-CcC---CcCCHHHhCCCeEEEEecCCCCCCcccCCCCEEEEeCCccccCCC--cCccHHHH
Confidence 566788999998876541 222 22333344788888887655544 111 12355555666 55 44333
Q ss_pred HHHHhhCHHHHHHHHHHHHHH------HHHhcCHHHH---HHHHHHHHHHHHh
Q 011954 420 IVKLATHVERRLTMGKKGYER------VKDRFLEHHM---SQRIALVLREVLQ 463 (474)
Q Consensus 420 i~~ll~~~~~~~~~~~~~~~~------~~~~fs~~~~---~~~~~~~~~~~~~ 463 (474)
+.. +...++..+..|... ..++|||-+- .++..++++-..+
T Consensus 282 v~~---~~~~r~~~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~k 331 (340)
T PRK14982 282 AEM---DNPQRQMFACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASVK 331 (340)
T ss_pred Hhc---cchhhHHHHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHHH
Confidence 321 222233333333222 2467898854 6777777665543
No 342
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=47.68 E-value=34 Score=30.98 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=27.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
||||+.+.+.... .-+..|+++|.+ +++|+|+++.....
T Consensus 1 M~ILvtNDDGi~a---pGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGINA---EGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCCCC---hhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 6899888763321 227888888876 57999999765543
No 343
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=47.66 E-value=2.9e+02 Score=27.31 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCC-chHHHHHHhc---CCCE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECF-GRITIEAMAF---QLPV 385 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~-~~~~~EAma~---G~Pv 385 (474)
++++++.. .+...+++++++. .+. . .+++.+.+..+|+++..+.. .+.. ....++.+.. +.|.
T Consensus 208 ~V~v~~r~-------~~ra~~la~~~g~--~~~--~-~~~~~~~l~~aDvVI~aT~s-~~~~i~~~~l~~~~~~~~~~~~ 274 (423)
T PRK00045 208 KITVANRT-------LERAEELAEEFGG--EAI--P-LDELPEALAEADIVISSTGA-PHPIIGKGMVERALKARRHRPL 274 (423)
T ss_pred eEEEEeCC-------HHHHHHHHHHcCC--cEe--e-HHHHHHHhccCCEEEECCCC-CCcEEcHHHHHHHHhhccCCCe
Confidence 55666543 3455566666652 111 1 14566778899999987642 2221 1223344332 4688
Q ss_pred EEcCCCCccee
Q 011954 386 LGTAAGGTMEI 396 (474)
Q Consensus 386 I~s~~~g~~e~ 396 (474)
+..|.+..+++
T Consensus 275 vviDla~Prdi 285 (423)
T PRK00045 275 LLVDLAVPRDI 285 (423)
T ss_pred EEEEeCCCCCC
Confidence 88888766665
No 344
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=47.58 E-value=46 Score=25.46 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=46.4
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHH--hcCCCE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAM--AFQLPV 385 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAm--a~G~Pv 385 (474)
-|+++|.|..+. -..+.+++.+++.|++-.+.-.+. .++..... .+|+++.... =.|=..-++.. ..|+||
T Consensus 4 ILlvCg~G~STS-lla~k~k~~~~e~gi~~~i~a~~~-~e~~~~~~~~~~DvIll~PQ---i~~~~~~i~~~~~~~~ipv 78 (104)
T PRK09590 4 ALIICAAGMSSS-MMAKKTTEYLKEQGKDIEVDAITA-TEGEKAIAAAEYDLYLVSPQ---TKMYFKQFEEAGAKVGKPV 78 (104)
T ss_pred EEEECCCchHHH-HHHHHHHHHHHHCCCceEEEEecH-HHHHHhhccCCCCEEEEChH---HHHHHHHHHHHhhhcCCCE
Confidence 367888886443 367788888999988644443432 34555543 5899998754 12223333433 478899
Q ss_pred EEcC
Q 011954 386 LGTA 389 (474)
Q Consensus 386 I~s~ 389 (474)
.+-+
T Consensus 79 ~~I~ 82 (104)
T PRK09590 79 VQIP 82 (104)
T ss_pred EEeC
Confidence 8765
No 345
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=47.37 E-value=1.1e+02 Score=25.18 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=68.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc---CCEEEEcCCCCCCCCchHHHHHHhcCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS---IDVLVQNSQARGECFGRITIEAMAFQL 383 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~---adv~v~ps~~~~E~~~~~~~EAma~G~ 383 (474)
|+-.|+|+-+.. .+...|.+..++-|. .|......++-...... +-++|---. ..|.|+.++|++..-.
T Consensus 8 pd~~lllvdDD~----~f~~~LaRa~e~RGf--~v~~a~~~~eal~~art~~PayAvvDlkL--~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 8 PDKSLLLVDDDT----PFLRTLARAMERRGF--AVVTAESVEEALAAARTAPPAYAVVDLKL--GDGSGLAVIEALRERR 79 (182)
T ss_pred CCceeEEecCCh----HHHHHHHHHHhccCc--eeEeeccHHHHHHHHhcCCCceEEEEeee--cCCCchHHHHHHHhcC
Confidence 555778887654 366777777777665 34444443332222211 112222222 6789999999998876
Q ss_pred C----EEEcCCCCcc---eeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 384 P----VLGTAAGGTM---EIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 384 P----vI~s~~~g~~---e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
| ||.|..+.+. |-|+-|-+-++..|.| .+++..++.+-
T Consensus 80 ~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAd--aDdi~aAl~~~ 124 (182)
T COG4567 80 ADMRIVVLTGYASIATAVEAVKLGACDYLAKPAD--ADDILAALLRR 124 (182)
T ss_pred CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCC--hHHHHHHHhhc
Confidence 5 6778777664 4455677889999998 89998888665
No 346
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=47.35 E-value=91 Score=27.98 Aligned_cols=40 Identities=20% Similarity=0.080 Sum_probs=25.3
Q ss_pred cccCEEEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 72 MKSKLVLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
+..++||+|.+.... |.++. +..+.++|++|.++|...+.
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggt-----la~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGT-----LAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHH-----HHHHHHCCCeEEEEEccCCc
Confidence 346789999865322 32222 23457899999999955443
No 347
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=46.90 E-value=45 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
||+|+-+.. +..+|=...+..+++.|.++|+.|-++=.
T Consensus 1 m~~Il~ivG-~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 1 MMKILGIVG-YKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CCcEEEEEe-cCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 456766665 33455568899999999999999998873
No 348
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=46.90 E-value=41 Score=30.29 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=26.3
Q ss_pred CEEEEEecCCCCCCh--hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGG--PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.|++++. .||+ ...+.+|+.+|++.|..|.++-..
T Consensus 2 ~~iai~s~---kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSP---KGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecC---CCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34454443 3444 477999999999999999999754
No 349
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.62 E-value=77 Score=30.55 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=47.4
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh----------cHHHHh
Q 011954 77 VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------GEKAIN 146 (474)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 146 (474)
|.|+. +.-+|=.+....||.+++++|+.+.++|.+.-. ......+...-...+++++... .--.-.
T Consensus 104 imfVG--LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR--agAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 104 IMFVG--LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR--AGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred EEEEe--ccCCCcceeHHHHHHHHHhcCCceeEEeecccc--cchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 44444 333444578999999999999999999965322 1122223333344555554321 011223
Q ss_pred hhcCCCEEEEccc
Q 011954 147 TALNADLVVLNTA 159 (474)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (474)
+.+++|+|++.++
T Consensus 180 Kke~fdvIIvDTS 192 (483)
T KOG0780|consen 180 KKENFDVIIVDTS 192 (483)
T ss_pred HhcCCcEEEEeCC
Confidence 4589999999874
No 350
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.60 E-value=3e+02 Score=27.22 Aligned_cols=100 Identities=8% Similarity=0.049 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc---CchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--c
Q 011954 282 GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA---QTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--S 356 (474)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~---~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~ 356 (474)
..|.+..++++-+... ..+...++-.+-|+|.-+.. ......+++++.+++|+..+..|.+.. .+.++.+ .
T Consensus 132 ~~G~~~a~~al~~~~~---~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~-~~~ei~~~~~ 207 (427)
T cd01971 132 YAGHEIVLKAIIDQYV---GQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPES-NGEELRSIPK 207 (427)
T ss_pred ccHHHHHHHHHHHHhc---cCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCC-CHHHHHhccc
Confidence 4688888777654221 10000123456678853211 113568899999999998777776542 3444443 4
Q ss_pred CCEEEEcCCCCCCCCchHHHHHH--hcCCCEEEcC
Q 011954 357 IDVLVQNSQARGECFGRITIEAM--AFQLPVLGTA 389 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAm--a~G~PvI~s~ 389 (474)
|.+-+..+. . .+....+.| .+|+|.+..+
T Consensus 208 A~~niv~~~--~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 208 AQFNLVLSP--W--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred CcEEEEEcH--h--hHHHHHHHHHHHhCCceEecC
Confidence 555444443 1 356666666 4799988764
No 351
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=46.44 E-value=55 Score=24.49 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+++|||+++... .+ ....+..+-+.+.++|.++.+....
T Consensus 2 ~~~~ILl~C~~G-~s-SS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAG-MS-TSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCc-hh-HHHHHHHHHHHHHHCCCcEEEEEec
Confidence 568899999732 11 1255677778888899998877643
No 352
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=46.29 E-value=49 Score=30.45 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=36.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLV 154 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (474)
||||++.. .+..-.+|++.|. .+++|..++... +.+........+++..+||+|
T Consensus 1 M~iLi~G~------~GqLG~~L~~~l~-~~~~v~a~~~~~-------------------~Ditd~~~v~~~i~~~~PDvV 54 (281)
T COG1091 1 MKILITGA------NGQLGTELRRALP-GEFEVIATDRAE-------------------LDITDPDAVLEVIRETRPDVV 54 (281)
T ss_pred CcEEEEcC------CChHHHHHHHHhC-CCceEEeccCcc-------------------ccccChHHHHHHHHhhCCCEE
Confidence 44666543 2367778888887 668888776442 233334446667778899998
Q ss_pred EEc
Q 011954 155 VLN 157 (474)
Q Consensus 155 ~~~ 157 (474)
+-.
T Consensus 55 In~ 57 (281)
T COG1091 55 INA 57 (281)
T ss_pred EEC
Confidence 754
No 353
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=46.19 E-value=39 Score=25.61 Aligned_cols=29 Identities=7% Similarity=0.150 Sum_probs=20.1
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcC
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKK 336 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~ 336 (474)
.+|+.+|+++|+....++ +-+.++++++.
T Consensus 61 ~fP~~kfiLIGDsgq~Dp---eiY~~ia~~~P 89 (100)
T PF09949_consen 61 DFPERKFILIGDSGQHDP---EIYAEIARRFP 89 (100)
T ss_pred HCCCCcEEEEeeCCCcCH---HHHHHHHHHCC
Confidence 349999999999765543 45555666653
No 354
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=45.92 E-value=54 Score=25.42 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=32.7
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCCh
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTV 350 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~ 350 (474)
-.+++.|+|+-+.. .....+++++.+.+-.+.+.|+...++.
T Consensus 68 Y~iklAivGD~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~eA 109 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEEA 109 (113)
T ss_pred hceeEEEEEccccc--ccchhHHHHHHHhcCCCeEEEECCHHHH
Confidence 57999999997532 2467899999999888899998876443
No 355
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=45.75 E-value=2.1e+02 Score=25.10 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=53.1
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHH---cCCCCeEEEecCCCCh----HHHHh---c----CCEEEEcCCCCCCCCchHHH
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAE---KKIQDHVHFVNKTLTV----SPYLA---S----IDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~---~~l~~~v~~~g~~~~~----~~~~~---~----adv~v~ps~~~~E~~~~~~~ 376 (474)
++++|+...+ .+.+|.+++++ .++.-.|++.|..++. ..++. . |.++.+|.- .++
T Consensus 111 VvFvGSpi~e---~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~~gshlv~Vppg--------~~L 179 (259)
T KOG2884|consen 111 VVFVGSPIEE---SEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKGDGSHLVSVPPG--------PLL 179 (259)
T ss_pred EEEecCcchh---hHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCCCCceEEEeCCC--------ccH
Confidence 4567775432 33466666554 4444567777754332 22221 1 234444432 255
Q ss_pred HHHhcCCCEEEcCCCCc-ceeeee-CCceeeecCCCCChHHHHHHHHHHhh
Q 011954 377 EAMAFQLPVLGTAAGGT-MEIVVN-GTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~-~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+-...-.|++..+-|+. .....+ ...-|-+++.+ --+||.||+--++
T Consensus 180 ~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~--DPELAlALRlSME 228 (259)
T KOG2884|consen 180 SDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPED--DPELALALRLSME 228 (259)
T ss_pred HHHhhcCceeccCcccccccccccccccccCCCccc--CHHHHHHHHhhHH
Confidence 55566789998875544 222211 12233344544 4689999876664
No 356
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=45.23 E-value=31 Score=31.61 Aligned_cols=40 Identities=18% Similarity=-0.031 Sum_probs=31.3
Q ss_pred CEEEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|+|+++.....| ||+..-+.+|++.|.+.-+.|..++...
T Consensus 1 ~~V~ll~EGtYPyv~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPYVRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCCCCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 679999876333 8889999999999998767777666543
No 357
>PRK08105 flavodoxin; Provisional
Probab=45.09 E-value=39 Score=27.74 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
||+++.. ..-|..+.++..+++.|.+.|++|.++..
T Consensus 3 ~i~I~Yg-S~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 3 KVGIFVG-TVYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred eEEEEEE-cCchHHHHHHHHHHHHHHhCCCceEEech
Confidence 5665542 22355579999999999999999988753
No 358
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=45.09 E-value=96 Score=29.49 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=29.7
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
..+||+++... ..+++..++.++...|.+|.++++..-
T Consensus 154 ~g~kia~vGD~-----~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 154 KDIKFTYVGDG-----RNNVANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred CCcEEEEecCC-----CcchHHHHHHHHHHcCCEEEEECCccc
Confidence 35789998642 125788999999999999999997643
No 359
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=44.97 E-value=2.4e+02 Score=27.69 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=40.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceee-eehhcHHHHhhhcCCCE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQV-LSAKGEKAINTALNADL 153 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Di 153 (474)
||||+|.+ || .=+.|+..|.+.+.--.+++.++...... ... ..+..+ .....+..+.+..++|+
T Consensus 1 mkVLviGs----Gg---REHAiA~~la~s~~v~~~~~apgN~G~a~-----~~~--~~~~~~~~~~~~lv~fA~~~~idl 66 (428)
T COG0151 1 MKVLVIGS----GG---REHALAWKLAQSPLVLYVYVAPGNPGTAL-----EAY--LVNIEIDTDHEALVAFAKEKNVDL 66 (428)
T ss_pred CeEEEEcC----Cc---hHHHHHHHHhcCCceeEEEEeCCCCccch-----hhh--hccCccccCHHHHHHHHHHcCCCE
Confidence 78999875 44 35667788887765555555333321111 111 112222 23455667778899999
Q ss_pred EEEcc
Q 011954 154 VVLNT 158 (474)
Q Consensus 154 V~~~~ 158 (474)
+++-.
T Consensus 67 ~vVGP 71 (428)
T COG0151 67 VVVGP 71 (428)
T ss_pred EEECC
Confidence 99863
No 360
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=44.88 E-value=2.5e+02 Score=25.77 Aligned_cols=205 Identities=13% Similarity=0.083 Sum_probs=99.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLV 154 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (474)
+.|.++.+....---...+..+-+++.+.||.+.++......... . .-......+.|-+
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e---~------------------~i~~l~~~~vDGi 60 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE---E------------------YIELLLQRRVDGI 60 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH---H------------------HHHHHHHTTSSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH---H------------------HHHHHHhcCCCEE
Confidence 458888877533222367778888889999999888755432100 0 1123445788977
Q ss_pred EEcccchh-hHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCCC-e
Q 011954 155 VLNTAVAG-KWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPE-T 232 (474)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~k-i 232 (474)
+..+.... ..+...... ..|+|..-...... ..+..+..+.........+.+. ..| ..+ |
T Consensus 61 I~~s~~~~~~~l~~~~~~-----~iPvV~~~~~~~~~----------~~~~~V~~D~~~a~~~a~~~Li-~~G--h~~~I 122 (279)
T PF00532_consen 61 ILASSENDDEELRRLIKS-----GIPVVLIDRYIDNP----------EGVPSVYIDNYEAGYEATEYLI-KKG--HRRPI 122 (279)
T ss_dssp EEESSSCTCHHHHHHHHT-----TSEEEEESS-SCTT----------CTSCEEEEEHHHHHHHHHHHHH-HTT--CCSTE
T ss_pred EEecccCChHHHHHHHHc-----CCCEEEEEeccCCc----------ccCCEEEEcchHHHHHHHHHHH-hcc--cCCeE
Confidence 76654333 222332222 23554422211110 1122222222222222233322 223 456 6
Q ss_pred EEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEE
Q 011954 233 YVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAV 312 (474)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ 312 (474)
.++.-.-+.... .. +...-.+.-++.|++.+...+ ..|..+. +.-.+++.++.+ .+|++..+
T Consensus 123 ~~i~~~~~~~~~--~~----R~~Gy~~Al~~~Gl~~~~~~i-~~~~~~~----~~g~~~~~~ll~-------~~p~idai 184 (279)
T PF00532_consen 123 AFIGGPEDSSTS--RE----RLQGYRDALKEAGLPIDEEWI-FEGDFDY----ESGYEAARELLE-------SHPDIDAI 184 (279)
T ss_dssp EEEEESTTTHHH--HH----HHHHHHHHHHHTTSCEEEEEE-EESSSSH----HHHHHHHHHHHH-------TSTT-SEE
T ss_pred EEEecCcchHHH--HH----HHHHHHHHHHHcCCCCCcccc-cccCCCH----HHHHHHHHHHHh-------hCCCCEEE
Confidence 666543322210 00 000112344567775544444 3454333 444455565555 45888889
Q ss_pred EEcCCCCcCchHHHHHHHHHHHcC---CCCeE
Q 011954 313 VVGSDMNAQTKFETELRNFVAEKK---IQDHV 341 (474)
Q Consensus 313 i~G~g~~~~~~~~~~l~~~~~~~~---l~~~v 341 (474)
++++.. ...-..+.+++.| +++.|
T Consensus 185 ~~~nd~-----~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 185 FCANDM-----MAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp EESSHH-----HHHHHHHHHHHTT-TCTTTEE
T ss_pred EEeCHH-----HHHHHHHHHHHcCCcccChhh
Confidence 998852 4455556666666 45556
No 361
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.88 E-value=2.5e+02 Score=26.50 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=74.8
Q ss_pred EecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecCCCChHHH
Q 011954 275 IINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKTLTVSPY 353 (474)
Q Consensus 275 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~~~~ 353 (474)
.+-.-.+.|.+..+++.++ .+|+ .+.+.|.|..+. ..-....+++..|++ ..|-|-|.-+-+.++
T Consensus 127 ~v~~~s~~~t~~dlv~~~k-----------~~p~-~v~~~~~g~Gs~--dhl~~~~~~k~~Gi~~~~Vpy~g~gea~taL 192 (319)
T COG3181 127 VVRADSPYKTLKDLVAYAK-----------ADPG-SVIGGGSGLGSA--DHLAGALFAKAAGIKITYVPYKGGGEALTAL 192 (319)
T ss_pred EEeCCCCcccHHHHHHHHH-----------hCCC-eEEecCCCCCcH--HHHHHHHHHHHhCCceeEEeecCccHHHHHH
Confidence 4444568899999988875 3476 344444443111 233345556666662 223333333556666
Q ss_pred H-hcCCEEEEcCCCCCCCCch------HHHHHHhcCCCEEEcCCCCccee----eeeCCceeeecCCCC--ChHHHHHHH
Q 011954 354 L-ASIDVLVQNSQARGECFGR------ITIEAMAFQLPVLGTAAGGTMEI----VVNGTTGLLHPTGKE--GVTPLANNI 420 (474)
Q Consensus 354 ~-~~adv~v~ps~~~~E~~~~------~~~EAma~G~PvI~s~~~g~~e~----v~~~~~G~l~~~~d~--~~~~la~~i 420 (474)
+ ...|+.+... .|..+. .++=.-.-.++....|++-+.|- +...-+|++.+++-+ ..+.+.+++
T Consensus 193 lgg~v~a~~~~~---se~~~~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~~~~~~a~ 269 (319)
T COG3181 193 LGGHVDAGSTNL---SELLSQVKSGTLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEIIAKLSAAL 269 (319)
T ss_pred hcCceeeeecCh---hhhhhhhccCceEEEEeechhhcCCCCCCCChHhcCCceeeeeeeEEEeCCCCCHHHHHHHHHHH
Confidence 6 4455554321 121111 11100111111112233322221 123457888887752 145677888
Q ss_pred HHHhhCHHHHHHHHHHHHH
Q 011954 421 VKLATHVERRLTMGKKGYE 439 (474)
Q Consensus 421 ~~ll~~~~~~~~~~~~~~~ 439 (474)
.+++.+++.++.+.+.+..
T Consensus 270 kk~l~s~e~~~~~~~~~~~ 288 (319)
T COG3181 270 KKALASPEWQKRLKELGLV 288 (319)
T ss_pred HHHhcCHHHHHHHHhcCCC
Confidence 8889999988887766543
No 362
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=44.59 E-value=56 Score=27.40 Aligned_cols=33 Identities=27% Similarity=0.077 Sum_probs=23.9
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
=||++++++..- .-+..+++.|.+.|+.+..++
T Consensus 83 DRVllfs~~~~~----~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 83 DRVLLFSPFSTD----EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp -EEEEEES-S------HHHHHHHHHHHHHT--EEEEE
T ss_pred ceEEEEeCCCCC----HHHHHHHHHHHHCCCCEEEEE
Confidence 479999986532 357889999999999999999
No 363
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=44.55 E-value=85 Score=29.34 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=42.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh----hhhcccchhccceeeeehh-----cHHH
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV----IYSLEHKMLDRGVQVLSAK-----GEKA 144 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~ 144 (474)
+|||+|+... .+...-.++|.+.||+|.-+..+.+....+. ...........+++++... ....
T Consensus 1 ~mkivF~GTp-------~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~ 73 (307)
T COG0223 1 MMRIVFFGTP-------EFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLE 73 (307)
T ss_pred CcEEEEEcCc-------hhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHH
Confidence 5788888752 3444445667778899886554433322210 1122223344565554332 2344
Q ss_pred HhhhcCCCEEEEcc
Q 011954 145 INTALNADLVVLNT 158 (474)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (474)
..+..+||++++-.
T Consensus 74 ~l~~l~~D~ivvva 87 (307)
T COG0223 74 ELAALDPDLIVVVA 87 (307)
T ss_pred HHhccCCCEEEEEe
Confidence 55567999998853
No 364
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=44.41 E-value=2.1e+02 Score=25.53 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCCcCchHHHH-HHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH-hcCC
Q 011954 306 VPSMHAVVVGSDMNAQTKFETE-LRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM-AFQL 383 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~-l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm-a~G~ 383 (474)
.+++...++|+|+.=+++..++ ..+..+++ .-|++|+-|-...-+.|...=|.+ +.|+
T Consensus 28 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~--------------------~pdf~I~isPN~~~PGP~~ARE~l~~~~i 87 (276)
T PF01993_consen 28 REDIDVRVVGSGAKMGPEDVEEVVTKMLKEW--------------------DPDFVIVISPNAAAPGPTKAREMLSAKGI 87 (276)
T ss_dssp -SSEEEEEEEEET--SHHHHHHHHHHHHHHH----------------------SEEEEE-S-TTSHHHHHHHHHHHHSSS
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHHHHhh--------------------CCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 3799999999987433322111 11222222 346666655421223344566776 5899
Q ss_pred CEEE-cCCCCc--ceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 384 PVLG-TAAGGT--MEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 384 PvI~-s~~~g~--~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
|+|. ||.++. .+-+++...||++-..| .|.-+=.++|
T Consensus 88 P~IvI~D~p~~k~kd~l~~~g~GYIivk~D----pMIGArREFL 127 (276)
T PF01993_consen 88 PCIVISDAPTKKAKDALEEEGFGYIIVKAD----PMIGARREFL 127 (276)
T ss_dssp -EEEEEEGGGGGGHHHHHHTT-EEEEETTS----------TTT-
T ss_pred CEEEEcCCCchhhHHHHHhcCCcEEEEecC----cccccccccc
Confidence 9865 676655 45566677899987755 5555555555
No 365
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=44.23 E-value=51 Score=26.23 Aligned_cols=38 Identities=16% Similarity=0.013 Sum_probs=28.1
Q ss_pred EEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEE-EEEeCC
Q 011954 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGAEV-VWITNQ 113 (474)
Q Consensus 76 kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V-~v~~~~ 113 (474)
|++++....+.|+. .+...++++++.+.||+| .|+...
T Consensus 1 ~~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 40 (127)
T TIGR03012 1 KYTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFYQ 40 (127)
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEeh
Confidence 35666665666654 478999999999999995 776643
No 366
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.07 E-value=1.9e+02 Score=27.09 Aligned_cols=71 Identities=8% Similarity=0.152 Sum_probs=47.7
Q ss_pred EEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcE-EEEEEcCCCCcC----chHHHHHHHHHHHcCCCCeEEEecC
Q 011954 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSM-HAVVVGSDMNAQ----TKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 272 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~-~l~i~G~g~~~~----~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
-.+++| ....--+.+++++++..+..... .+|+. +|+|..++..+. ..+..+|++++.++|+.-.|...++
T Consensus 149 g~v~vg--~s~dTa~Fav~~i~~WW~~~g~~--~yp~a~~lli~~D~GgsN~~r~r~wk~~L~~la~~~gl~I~v~hyPP 224 (311)
T PF07592_consen 149 GWVSVG--TSHDTADFAVDSIRRWWEEMGKA--RYPHAKRLLITADNGGSNGSRRRLWKKRLQELADETGLSIRVCHYPP 224 (311)
T ss_pred EEEEEe--cCcccHHHHHHHHHHHHHHhChh--hcCchheEEEeccCCCCccchhHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 344666 45667789999999988776332 46654 455555432221 2378899999999999777665553
No 367
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=44.00 E-value=1e+02 Score=28.83 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=52.5
Q ss_pred CcEEE--EEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec--CCCChH----HHHhcCCEEEEcCCCCCC--CCchHHH
Q 011954 307 PSMHA--VVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN--KTLTVS----PYLASIDVLVQNSQARGE--CFGRITI 376 (474)
Q Consensus 307 ~~~~l--~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g--~~~~~~----~~~~~adv~v~ps~~~~E--~~~~~~~ 376 (474)
|+++= +++.++.+......++++..+++.|+. |.-.+ ...|+. .+....|++..|... .. ++...+.
T Consensus 157 Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~--vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn-~i~s~~~~l~~ 233 (322)
T COG2984 157 PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE--VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDN-LIVSAIESLLQ 233 (322)
T ss_pred CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE--EEEEecCcccccHHHHHHhcCCCcEEEEecch-HHHHHHHHHHH
Confidence 55543 455655433334677888888888873 32222 334443 344677999888652 22 3445677
Q ss_pred HHHhcCCCEEEcCCC
Q 011954 377 EAMAFQLPVLGTAAG 391 (474)
Q Consensus 377 EAma~G~PvI~s~~~ 391 (474)
+|...++|+++++.+
T Consensus 234 ~a~~~kiPli~sd~~ 248 (322)
T COG2984 234 VANKAKIPLIASDTS 248 (322)
T ss_pred HHHHhCCCeecCCHH
Confidence 999999999999865
No 368
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=44.00 E-value=58 Score=25.40 Aligned_cols=39 Identities=13% Similarity=-0.127 Sum_probs=25.4
Q ss_pred cCEEEEEecCCCCCChhHH--HHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLL--LMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|||+.++. .+-|-+..+ ...|.++-++.||++.|=+..
T Consensus 2 ~mkivaVta-cp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg 42 (114)
T PRK10427 2 MAYLVAVTA-CVSGVAHTYMAAERLEKLCQLEKWGVKIETQG 42 (114)
T ss_pred CceEEEEee-CCCcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 477888874 222333333 356667777899999998843
No 369
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=43.95 E-value=96 Score=30.72 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=42.8
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
++||||++.. || .-+.|+..|.+.++-..+++..+...... .. ......+.......+..+.+..++|
T Consensus 3 ~~~kvLviG~----g~---rehal~~~~~~~~~~~~~~~~pgn~g~~~----~~-~~~~~~~~~~d~~~l~~~a~~~~iD 70 (426)
T PRK13789 3 VKLKVLLIGS----GG---RESAIAFALRKSNLLSELKVFPGNGGFPD----DE-LLPADSFSILDKSSVQSFLKSNPFD 70 (426)
T ss_pred CCcEEEEECC----CH---HHHHHHHHHHhCCCCCEEEEECCchHHhc----cc-cccccCcCcCCHHHHHHHHHHcCCC
Confidence 3589999975 33 56778889988886666666433221000 00 0000113334444555667778999
Q ss_pred EEEEcc
Q 011954 153 LVVLNT 158 (474)
Q Consensus 153 iV~~~~ 158 (474)
+|+...
T Consensus 71 ~Vv~g~ 76 (426)
T PRK13789 71 LIVVGP 76 (426)
T ss_pred EEEECC
Confidence 999753
No 370
>PLN02929 NADH kinase
Probab=43.79 E-value=1.3e+02 Score=28.15 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc--ce-------
Q 011954 325 ETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT--ME------- 395 (474)
Q Consensus 325 ~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~--~e------- 395 (474)
.+.+++..++.|+. +... ...++......+|++|.-. .+|.=+...-.+-.++||+.-+.|.. .|
T Consensus 36 ~~~~~~~L~~~gi~--~~~v-~r~~~~~~~~~~Dlvi~lG---GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~ 109 (301)
T PLN02929 36 VNFCKDILQQKSVD--WECV-LRNELSQPIRDVDLVVAVG---GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE 109 (301)
T ss_pred HHHHHHHHHHcCCE--EEEe-eccccccccCCCCEEEEEC---CcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc
Confidence 34455555555542 2111 1122234456779888544 34433333333556799999988731 11
Q ss_pred eeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 396 IVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 396 ~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+=..+..|+++... ++++.+++.+++++
T Consensus 110 ~~~~r~lGfL~~~~---~~~~~~~L~~il~g 137 (301)
T PLN02929 110 FDARRSTGHLCAAT---AEDFEQVLDDVLFG 137 (301)
T ss_pred cccccCccccccCC---HHHHHHHHHHHHcC
Confidence 11123589999876 78999999999874
No 371
>PRK01355 azoreductase; Reviewed
Probab=43.78 E-value=59 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=29.3
Q ss_pred cCEEEEEecCCC--CCCh-hHHHHHHHHHHHhc--CcEEEEEeCC
Q 011954 74 SKLVLLVSHELS--LSGG-PLLLMELAFLLRGV--GAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~--~gG~-~~~~~~l~~~L~~~--G~~V~v~~~~ 113 (474)
|||||+|..... .+|. ...+..+++.+.+. |++|.++...
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~ 45 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLN 45 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 578999998765 3444 36677788888874 5899988754
No 372
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=43.61 E-value=75 Score=27.52 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCC---------CCCchHHHHHHhcCCCEEEcCCC
Q 011954 324 FETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARG---------ECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~---------E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
....+.+..+.+|. .+.+....++ +..+|.+|+|.-... .+..-.+.++...|+|+++.-.|
T Consensus 11 n~~~~~~~l~~~g~--~v~~~~~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 11 NLRSVANALKRLGV--EAVVSSDPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred hHHHHHHHHHHCCC--cEEEEcChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 46667777777775 3555543332 357899999874100 13334566778899999988544
No 373
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=43.55 E-value=1.7e+02 Score=25.50 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChH------HHHhcC
Q 011954 286 DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVS------PYLASI 357 (474)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~------~~~~~a 357 (474)
..=++++.++.+. ..=-.|++-|+....+-+.-..+++-..+.|++....++.+- ..+. +.+...
T Consensus 79 ~~Ri~aA~~ly~~-------gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~ 151 (235)
T COG2949 79 TYRIDAAIALYKA-------GKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTN 151 (235)
T ss_pred HHHHHHHHHHHhc-------CCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcC
Confidence 3445666655442 233357788886655444455666667778988777777642 2333 345555
Q ss_pred CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc
Q 011954 358 DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 358 dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~ 393 (474)
++.+.+- .-.+..++.-|+..|+-.++.+.++.
T Consensus 152 ~ftIItQ---~FHceRAlfiA~~~gIdAic~~ap~p 184 (235)
T COG2949 152 DFTIITQ---RFHCERALFIARQMGIDAICFAAPDP 184 (235)
T ss_pred cEEEEec---ccccHHHHHHHHHhCCceEEecCCCc
Confidence 5556554 45688899999999999999887754
No 374
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.49 E-value=2.5e+02 Score=25.41 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc---------hHHHHHHHHHHHcCCCCeEEEecCCCChHHH
Q 011954 283 KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT---------KFETELRNFVAEKKIQDHVHFVNKTLTVSPY 353 (474)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~---------~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 353 (474)
..-+.+++.++.+.+ -++.++.-|...++.. +....|++..+++|++ -+.=.-..+++..+
T Consensus 26 Es~e~~~~~a~~~~~---------~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~-~~Tev~d~~~v~~~ 95 (250)
T PRK13397 26 ESYDHIRLAASSAKK---------LGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL-SVSEIMSERQLEEA 95 (250)
T ss_pred CCHHHHHHHHHHHHH---------cCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC-EEEeeCCHHHHHHH
Confidence 455667777776543 4677777776433221 2456778888888874 22222233566666
Q ss_pred HhcCCEEEEcCCCCCCCCchHHHHHH-hcCCCEEEcCC
Q 011954 354 LASIDVLVQNSQARGECFGRITIEAM-AFQLPVLGTAA 390 (474)
Q Consensus 354 ~~~adv~v~ps~~~~E~~~~~~~EAm-a~G~PvI~s~~ 390 (474)
...+|++=.||. +..-..+++++ ..|+||+.+.-
T Consensus 96 ~e~vdilqIgs~---~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 96 YDYLDVIQVGAR---NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HhcCCEEEECcc---cccCHHHHHHHHccCCeEEEeCC
Confidence 667999999996 55556677665 56999998853
No 375
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=43.42 E-value=43 Score=30.83 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|.+. +.||++ ....+|+.+|+++|+.|.++-.+
T Consensus 2 ~~i~~~----gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFY----GKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEE----CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 345555 368886 66899999999999999998643
No 376
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=43.41 E-value=1.4e+02 Score=28.72 Aligned_cols=83 Identities=14% Similarity=0.046 Sum_probs=45.3
Q ss_pred cCEEEEEecC-CCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 74 ~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
..||+++... ...|-+..+...++..+...|.+|+++++..-....+............|..+......... ....|
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea--~~~aD 247 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEA--FKDAD 247 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCC
Confidence 4688888643 22332346778899999999999999998643322222221111222334333222222221 24678
Q ss_pred EEEEcc
Q 011954 153 LVVLNT 158 (474)
Q Consensus 153 iV~~~~ 158 (474)
+|+...
T Consensus 248 vvyt~~ 253 (357)
T TIGR03316 248 IVYPKS 253 (357)
T ss_pred EEEECC
Confidence 888764
No 377
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=43.34 E-value=44 Score=30.56 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=26.8
Q ss_pred EEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 76 LVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 76 kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||.-+. ..||.+ ..+.+||.+|++.|+.|.++-.+
T Consensus 3 ~iIav~---~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 3 LVLAVY---GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred eEEEEE---CCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 454444 267776 66899999999999999998643
No 378
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=42.88 E-value=43 Score=31.86 Aligned_cols=42 Identities=21% Similarity=-0.048 Sum_probs=29.9
Q ss_pred cccCEEEEEecCCCC-CChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+++||+++....+. .-.. ......+++|.+.||+|..+...
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~ 44 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGIT 44 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEEC
Confidence 567899999844333 1112 45678899999999999987744
No 379
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=42.82 E-value=50 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=25.9
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEE
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVW 109 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v 109 (474)
|||+++... ..|..++.+..+++.|...|++|.+
T Consensus 1 M~i~IiY~S-~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYLS-LSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEEC-CCChHHHHHHHHHHHHhhCCeeEEe
Confidence 567776643 3466678899999999999999874
No 380
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=42.69 E-value=1.2e+02 Score=22.74 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHh---cCCCEEE-cCCCC---cc
Q 011954 324 FETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMA---FQLPVLG-TAAGG---TM 394 (474)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~-s~~~g---~~ 394 (474)
....+++..+..++ ..+......++....+.. .|++++-... ...-|..+++.+. .++|+|. |+... ..
T Consensus 10 ~~~~l~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~~d~iiid~~~-~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 10 IRELLEKLLERAGY-EEVTTASSGEEALELLKKHPPDLIIIDLEL-PDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHHHHTTE-EEEEEESSHHHHHHHHHHSTESEEEEESSS-SSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHHHHHHhCCC-CEEEEECCHHHHHHHhcccCceEEEEEeee-ccccccccccccccccccccEEEecCCCCHHHHH
Confidence 34444444443332 133333333333333322 4666665431 3344555555443 3566653 43332 23
Q ss_pred eeeeeCCceeeecCCCCChHHHHHHHH
Q 011954 395 EIVVNGTTGLLHPTGKEGVTPLANNIV 421 (474)
Q Consensus 395 e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (474)
+.++.|..|++..|-+ .++|.++|.
T Consensus 88 ~~~~~g~~~~l~kp~~--~~~l~~~i~ 112 (112)
T PF00072_consen 88 EALRAGADDYLSKPFS--PEELRAAIN 112 (112)
T ss_dssp HHHHTTESEEEESSSS--HHHHHHHHH
T ss_pred HHHHCCCCEEEECCCC--HHHHHHhhC
Confidence 4455677899999988 899988874
No 381
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=42.51 E-value=60 Score=26.54 Aligned_cols=67 Identities=18% Similarity=0.072 Sum_probs=42.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCc---EEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhh
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGA---EVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTA 148 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (474)
|..+||+++...++..=....+..-.+.|.+.|. ++.++..++..+ ++ . ..+.+.+.
T Consensus 1 ~~~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~E-------lP------------~-a~~~l~~~ 60 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFE-------LP------------L-AAKRLAES 60 (144)
T ss_dssp -TTEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGG-------HH------------H-HHHHHHHC
T ss_pred CCCCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHH-------HH------------H-HHHHHhcc
Confidence 5678999999988764334556666778888887 677777443211 00 0 13445556
Q ss_pred cCCCEEEEcc
Q 011954 149 LNADLVVLNT 158 (474)
Q Consensus 149 ~~~DiV~~~~ 158 (474)
.++|.|++-.
T Consensus 61 ~~~Davi~lG 70 (144)
T PF00885_consen 61 GRYDAVIALG 70 (144)
T ss_dssp STESEEEEEE
T ss_pred cCccEEEEec
Confidence 7799988753
No 382
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=42.39 E-value=3.2e+02 Score=26.30 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHhcCCC--CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH-
Q 011954 257 REHVRESLGVR--DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA- 333 (474)
Q Consensus 257 ~~~~r~~~~~~--~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~- 333 (474)
+..+.+++|++ .+..+|-.++ .+.-.+..++++++.. ...++++|-.+- ....+.....
T Consensus 167 ~~~~~~~lg~~~~~~~~~vSLF~--Ye~~al~~ll~~~~~~----------~~pv~lLvp~Gr------~~~~v~~~l~~ 228 (371)
T TIGR03837 167 QRALLRRLGVGPEPDALLVSLFC--YENAALPALLDALAQS----------GSPVHLLVPEGR------ALAAVAAWLGD 228 (371)
T ss_pred HHHHHHHcCCCCCCCCeEEEEEe--cCChhHHHHHHHHHhC----------CCCeEEEecCCc------cHHHHHHHhCc
Confidence 34566788885 3444443333 2334578888888643 245666665553 3444444331
Q ss_pred ---------HcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 334 ---------EKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 334 ---------~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
+.| .-.++++.+ +++...++-.||+-++= +|- +.+=|.-+|+|.|=--
T Consensus 229 ~~~~~g~~~~~g-~L~~~~LPf~~Q~~yD~LLW~cD~NfVR----GED---SFVRAqWAgkPfvWhI 287 (371)
T TIGR03837 229 ALLAAGDVHRRG-ALTVAVLPFVPQDDYDRLLWACDLNFVR----GED---SFVRAQWAGKPFVWHI 287 (371)
T ss_pred cccCCccccccC-ceEEEEcCCCChhhHHHHHHhChhcEee----chh---HHHHHHHcCCCceeec
Confidence 111 024666665 58899999999996643 444 6889999999998543
No 383
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=42.01 E-value=2.8e+02 Score=25.57 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=28.5
Q ss_pred ChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--cCCCEEEc
Q 011954 349 TVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--FQLPVLGT 388 (474)
Q Consensus 349 ~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~G~PvI~s 388 (474)
++.+.+. ..|+++-.|.. ..-|.--++++|+ +..|+|-.
T Consensus 96 ~L~e~i~~v~ptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSGV-GGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 5666777 78999988851 4557778888888 56787754
No 384
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=41.94 E-value=1.7e+02 Score=27.08 Aligned_cols=26 Identities=27% Similarity=0.297 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 88 GGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+...-..+++.|.+.|++|.++...
T Consensus 8 ggd~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 8 GGDARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEecc
Confidence 34567788999999999999999754
No 385
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=41.91 E-value=39 Score=28.11 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=24.7
Q ss_pred cCCEEEEcCCC--CCCCCc--hHHHHHHhcCCCEEEcC
Q 011954 356 SIDVLVQNSQA--RGECFG--RITIEAMAFQLPVLGTA 389 (474)
Q Consensus 356 ~adv~v~ps~~--~~E~~~--~~~~EAma~G~PvI~s~ 389 (474)
.+|++|+.-.. +.||-| -.+.+|++.|+||++.=
T Consensus 93 ~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 93 GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 38999986432 234444 46789999999999873
No 386
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=41.64 E-value=3.8e+02 Score=26.88 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc-c-CcchHHHHHHHHH--HHHHHHHhc-
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS-R-GKGQDLFLHSFYE--SLQLIREKK- 303 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~-~-~Kg~~~ll~a~~~--l~~~~~~~~- 303 (474)
..++.+++.+..++....+-+... .++.+++|+| ++.+..+.+. . .||.+..+.+... +.+.....+
T Consensus 97 ~p~~ifv~~TC~t~iIGdDle~va-----~~~~~~~gip---VV~v~~~Gf~~~~tqg~d~~Laa~~~~~~~~~~~~~~~ 168 (457)
T CHL00073 97 NPSVIVWIGTCTTEIIKMDLEGMA-----PKLEAEIGIP---IVVARANGLDYAFTQGEDTVLAAMAHRCPEQEVSTSES 168 (457)
T ss_pred CCCEEEEEccCcHHhhccCHHHHH-----HHHHHhhCCC---EEEEeCCCccCcCCcchhHHHHHhHHhhhhhhcCcccc
Confidence 367888888887877765544332 3344555553 4444455555 3 8999999998875 322111000
Q ss_pred --------------------cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC-CCChHHHHhcCCEEEE
Q 011954 304 --------------------LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK-TLTVSPYLASIDVLVQ 362 (474)
Q Consensus 304 --------------------~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~~adv~v~ 362 (474)
.....-.+.++|+-+.. ....++.+.+++|+.-+..+... .+++..+= .+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~---~~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~-~~~~~c~ 244 (457)
T CHL00073 169 KETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPST---VASQLTLELKRQGIKVSGWLPSQRYTDLPSLG-EGVYVCG 244 (457)
T ss_pred ccccccccccccccccccccccCCCCcEEEEEecCcc---cHHHHHHHHHHcCCeEeEEeCCCCHHHHHhhC-cccEEEE
Confidence 00011258899986522 46789999999999655333321 24444443 2222222
Q ss_pred cCCCCCCCCchHHHHHH--hcCCCEEEcCCC
Q 011954 363 NSQARGECFGRITIEAM--AFQLPVLGTAAG 391 (474)
Q Consensus 363 ps~~~~E~~~~~~~EAm--a~G~PvI~s~~~ 391 (474)
.+- |.-..++++ .+|+|.+....+
T Consensus 245 ~~P-----~ls~aa~~Le~~~gvp~~~~P~P 270 (457)
T CHL00073 245 VNP-----FLSRTATTLMRRRKCKLIGAPFP 270 (457)
T ss_pred cCc-----chHHHHHHHHHHhCCceeecCCc
Confidence 222 222444454 578898887654
No 387
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.54 E-value=1.3e+02 Score=27.40 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh--CHH
Q 011954 351 SPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT--HVE 428 (474)
Q Consensus 351 ~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~--~~~ 428 (474)
..-++.||++|.-... .|+|=-.+++.+ .+.+++....++..+- ...+--+..+|.. ...++++|.+.+. ||+
T Consensus 47 ~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~~~~~~~~~~~-~~~dPH~Wldp~n--~~~~a~~I~~~L~~~dP~ 121 (264)
T cd01020 47 AAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVIAADLDGHDDK-EGDNPHLWYDPET--MSKVANALADALVKADPD 121 (264)
T ss_pred HHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEEeeecccccCC-CCCCCceecCHhH--HHHHHHHHHHHHHHhCcc
Confidence 3446788988876642 566555566555 3556665544332110 0012234555555 7788888887776 787
Q ss_pred HHHHHHHHHHHHHHH
Q 011954 429 RRLTMGKKGYERVKD 443 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~ 443 (474)
......+++.++..+
T Consensus 122 ~~~~y~~N~~~~~~~ 136 (264)
T cd01020 122 NKKYYQANAKKFVAS 136 (264)
T ss_pred cHHHHHHHHHHHHHH
Confidence 777777777776655
No 388
>PRK07308 flavodoxin; Validated
Probab=41.46 E-value=55 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.012 Sum_probs=25.5
Q ss_pred EEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+|.++.. ...|..+..+..+++.|.+.|++|.+.-.
T Consensus 3 ~~~IvY~-S~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 3 LAKIVYA-SMTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred eEEEEEE-CCCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 4444432 23355678899999999999999887653
No 389
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=41.29 E-value=2.8e+02 Score=26.29 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=44.2
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--------------CCChHHHHhcCCEEEE--cCCCCCCCCc
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--------------TLTVSPYLASIDVLVQ--NSQARGECFG 372 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--------------~~~~~~~~~~adv~v~--ps~~~~E~~~ 372 (474)
-.+-|+|-|. ....+.+.++.+|. +|..... ..++.++++.||++++ |.. .|+-|
T Consensus 143 kTvGIiG~G~-----IG~~va~~l~afgm--~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT--~eT~g 213 (324)
T COG0111 143 KTVGIIGLGR-----IGRAVAKRLKAFGM--KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLT--PETRG 213 (324)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCC--eEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCC--cchhc
Confidence 3455555553 55555555555554 2333221 2569999999999876 555 67766
Q ss_pred hH---HHHHHhcCCCEEEcCCCCc
Q 011954 373 RI---TIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 373 ~~---~~EAma~G~PvI~s~~~g~ 393 (474)
+. .+..|--|.-+|-+..|+.
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~v 237 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGV 237 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcce
Confidence 64 5555555554455555543
No 390
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=41.05 E-value=1.9e+02 Score=27.67 Aligned_cols=84 Identities=13% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC----CChHHHHhc----CCEEEEcCCCCCCCCchHHH
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT----LTVSPYLAS----IDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~----~~~~~~~~~----adv~v~ps~~~~E~~~~~~~ 376 (474)
++|+-++++.|-|.+.-.+-.......+.+.++ +|+.++-.. .-+..+++. .|.|+.|.+. .--.|....
T Consensus 133 ~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~-~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV-s~I~G~~~y 210 (369)
T TIGR00075 133 ENPDRKVVFFAIGFETTAPTTASTLLSAKAEDI-NNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHV-STIIGAKPY 210 (369)
T ss_pred HCCCCeEEEEecCchhccHHHHHHHHHHHHcCC-CcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEE-EEEeccchh
Confidence 358889999998865544455556666677777 466666642 334555543 5889999874 444566666
Q ss_pred HHHh--cCCCEEEcCC
Q 011954 377 EAMA--FQLPVLGTAA 390 (474)
Q Consensus 377 EAma--~G~PvI~s~~ 390 (474)
|.++ +|+|+|.+..
T Consensus 211 ~~l~~~y~~P~VVaGF 226 (369)
T TIGR00075 211 APIAEKYKIPIVIAGF 226 (369)
T ss_pred HHHHHHcCCCeEEecc
Confidence 6554 6899998853
No 391
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=40.87 E-value=45 Score=29.39 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=43.4
Q ss_pred cCEEEEEecCCCCCChhHH-HHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 74 SKLVLLVSHELSLSGGPLL-LMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~-~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
++.+++++.. |+|.+ +.--...|++.|.+|++.......... -..+++.++......... .+||
T Consensus 5 ~~~vlil~~~----g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vk----------cs~~v~~~~d~~l~D~~~-~~yD 69 (247)
T KOG2764|consen 5 KKAVLILCAD----GMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVK----------CSRGVHILPDNALFDVVD-SKYD 69 (247)
T ss_pred cccEEEEccC----CcceeEEEEeHHHHHhcCceEEEecCCCCcccc----------cccceEecccccchhhcc-cccc
Confidence 4567777654 55421 222277899999999999966443111 223444544444444444 8999
Q ss_pred EEEEccc
Q 011954 153 LVVLNTA 159 (474)
Q Consensus 153 iV~~~~~ 159 (474)
+|+....
T Consensus 70 viilPGG 76 (247)
T KOG2764|consen 70 VIILPGG 76 (247)
T ss_pred EEEecCC
Confidence 9999865
No 392
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=40.84 E-value=46 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=27.5
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||++.. .||.. ....+|+.+|++.|+.|.++-.+
T Consensus 1 m~ia~~g----KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG----KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC----CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5666554 57775 66899999999999999988744
No 393
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=40.49 E-value=48 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.1
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|.+. ..||.. ....+|+.+|+++|+.|.++-.+
T Consensus 1 ~~i~~~----gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVY----GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEE----cCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 455555 367776 56889999999999999998643
No 394
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=40.24 E-value=47 Score=30.05 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=27.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
||||+.+.+.-.. .-+..|+++|++ +++|.|+++...+.
T Consensus 1 M~ILlTNDDGi~a---~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGITS---PGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCCCC---HHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 6899888753221 237788888875 57999999765544
No 395
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=40.18 E-value=2.3e+02 Score=23.92 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=55.8
Q ss_pred CCCEEEEEecccccCcch-HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQ-DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
.+++++++.|- ....++ ...+.-+.++.+.+.+. ..+++++.+--.|.++. .+.++++++..+. +..-+.|.
T Consensus 51 ~Gk~~lv~F~y-T~CpdvCp~~l~~l~~~~~~l~~~---~~~v~~v~ISvDP~~DT--p~~L~~Y~~~~~~-~~~~ltg~ 123 (174)
T PF02630_consen 51 KGKWVLVFFGY-TRCPDVCPTTLANLSQLQKQLGEE---GKDVQFVFISVDPERDT--PEVLKKYAKKFGP-DFIGLTGS 123 (174)
T ss_dssp TTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHT---TTTEEEEEEESSTTTC---HHHHHHHHHCHTT-TCEEEEEE
T ss_pred CCCeEEEEEEE-cCCCccCHHHHHHHHHHHHHhhhc---cCceEEEEEEeCCCCCC--HHHHHHHHHhcCC-CcceeEeC
Confidence 46677777663 333444 34555566666666653 36899999998876653 5788888888874 45666676
Q ss_pred CCChHHHHhcCCEEE
Q 011954 347 TLTVSPYLASIDVLV 361 (474)
Q Consensus 347 ~~~~~~~~~~adv~v 361 (474)
.+++.++.....++.
T Consensus 124 ~~~i~~l~~~~~v~~ 138 (174)
T PF02630_consen 124 REEIEELAKQFGVYY 138 (174)
T ss_dssp HHHHHHHHHHCTHCE
T ss_pred HHHHHHHHHHHHhhh
Confidence 666777766655544
No 396
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=40.05 E-value=2.7e+02 Score=24.82 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=64.3
Q ss_pred EEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHH-HHHHHHHcCCCCeEEEecCCCChH
Q 011954 273 FAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETE-LRNFVAEKKIQDHVHFVNKTLTVS 351 (474)
Q Consensus 273 i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~-l~~~~~~~~l~~~v~~~g~~~~~~ 351 (474)
|+=.|++.-..=++++++--+ ..+++...++|+|+.=+++..++ .....++.+
T Consensus 7 iiKlGNig~s~~idl~lDErA-----------dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--------------- 60 (277)
T PRK00994 7 IIKLGNIGMSPVIDLLLDERA-----------DREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--------------- 60 (277)
T ss_pred EEEecccchHHHHHHHHHhhh-----------cccCceEEEeccCCCCCHHHHHHHHHHHHHhhC---------------
Confidence 334566654444455544332 33799999999997544433332 222223332
Q ss_pred HHHhcCCEEEEcCCCCCCCCchHHHHHHh-cCCCEEE-cCCCCc--ceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 352 PYLASIDVLVQNSQARGECFGRITIEAMA-FQLPVLG-TAAGGT--MEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~~~~~~EAma-~G~PvI~-s~~~g~--~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
-|++++-|-...-+.|...=|.+. .|+|+|. ||.++. .+-+++...|+++-..| .+.-+=.++|
T Consensus 61 -----pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~D----pMIGArREFL 128 (277)
T PRK00994 61 -----PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKAD----PMIGARREFL 128 (277)
T ss_pred -----CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecC----ccccchhhcc
Confidence 355555444213345556667665 5889865 666665 34455667888887655 4444444444
No 397
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=40.04 E-value=2.7e+02 Score=25.36 Aligned_cols=63 Identities=17% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH-hcCCCEEEcCC
Q 011954 324 FETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM-AFQLPVLGTAA 390 (474)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm-a~G~PvI~s~~ 390 (474)
....+++.++++|+.- +.=.-...++..+...+|++-.+|. +..-..+++++ ..|+||+.+.-
T Consensus 77 gl~~l~~~~~~~Gl~~-~t~~~d~~~~~~l~~~~d~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 77 GLKLLRRAADEHGLPV-VTEVMDPRDVEIVAEYADILQIGAR---NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHhCCCE-EEeeCChhhHHHHHhhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 4567888888888742 2211123455555566899999996 55555666554 56999998853
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=40.02 E-value=1.2e+02 Score=27.57 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhcCcEEEEEeCCCCCCch-----hhhhhcccchhccceeeeehh-------------cHHHHhhhcCC
Q 011954 90 PLLLMELAFLLRGVGAEVVWITNQKPNEPD-----EVIYSLEHKMLDRGVQVLSAK-------------GEKAINTALNA 151 (474)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 151 (474)
..++..|++.|.+.|+.|-|++.++..... .....+.......++.+-+.. ..-.+.....|
T Consensus 43 STli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~ 122 (266)
T PF03308_consen 43 STLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGF 122 (266)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCC
Confidence 688999999999999999999944322110 001111122223344432211 23355667899
Q ss_pred CEEEEcccchhh
Q 011954 152 DLVVLNTAVAGK 163 (474)
Q Consensus 152 DiV~~~~~~~~~ 163 (474)
|+|++.+...+.
T Consensus 123 D~IiiETVGvGQ 134 (266)
T PF03308_consen 123 DVIIIETVGVGQ 134 (266)
T ss_dssp SEEEEEEESSST
T ss_pred CEEEEeCCCCCc
Confidence 999999865544
No 399
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=39.93 E-value=2.3e+02 Score=25.12 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHh---cCCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 357 IDVLVQNSQARGECFGRITIEAMA---FQLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
.|++++-..- .+.-|..+++.+. .+.|+|.- ..... .+.+..|..|++..+.+ .+++.++|..+
T Consensus 50 ~DlvilD~~~-p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~--~~~l~~~i~~~ 120 (239)
T PRK10430 50 IDLILLDIYM-QQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ--ASRFEEALTGW 120 (239)
T ss_pred CCEEEEecCC-CCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Confidence 5777764321 3344566665553 35676543 32221 23445577899999888 89999999864
No 400
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=39.89 E-value=71 Score=26.06 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=25.0
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 77 VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.++++ .+-.|....+.+||..|++.|+.|.++-..
T Consensus 3 i~v~s~-~~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 3 IAVWSP-KGGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp EEEEES-STTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred EEEECC-CCCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 444443 333566789999999999999998888754
No 401
>PLN02778 3,5-epimerase/4-reductase
Probab=39.73 E-value=1.4e+02 Score=27.86 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=22.8
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
+.||||+... .+..=..|++.|.++|++|++.
T Consensus 8 ~~~kiLVtG~------tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 8 ATLKFLIYGK------TGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCeEEEECC------CCHHHHHHHHHHHhCCCEEEEe
Confidence 3578887653 3345567888899999999754
No 402
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=39.41 E-value=2.1e+02 Score=23.26 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHc--CCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEK--KIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~--~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
.++++.+.|+.+ ..+.+..+..+. +.+-.|..+...++ ...||++.+... +.-...-+-...-+.|
T Consensus 26 ~~~~icv~g~~~-----~~~~L~~l~~~~~~~~~i~v~~~~~~~~----~~~C~ilyi~~~---~~~~~~~i~~~~~~~~ 93 (145)
T PF13689_consen 26 SPFRICVLGDDP-----FAEALSTLAGKQVGGRPIRVRRLSSPNE----ISGCHILYISSS---ESSQLPEILRKLPGKP 93 (145)
T ss_pred CCeEEEEECChH-----HHHHHHHhhhcccCCCcEEEEECCCCcc----cccccEEEECCC---ChHHHHHHHHhcCCCc
Confidence 467888888764 666777664322 22223333333333 478999988774 3333323334445777
Q ss_pred EEE
Q 011954 385 VLG 387 (474)
Q Consensus 385 vI~ 387 (474)
|+.
T Consensus 94 vLt 96 (145)
T PF13689_consen 94 VLT 96 (145)
T ss_pred eEE
Confidence 754
No 403
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.18 E-value=49 Score=30.16 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=23.9
Q ss_pred CCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 86 LSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 86 ~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.||.+ +.+.+||.+|++.|+.|.++-.+
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 67775 67899999999999999999744
No 404
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=39.04 E-value=50 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.3
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|.+. +.||.+ ....+|+.+|+++|+.|.++-.+
T Consensus 1 ~~i~v~----gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVY----GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEe----cCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 456655 267775 66899999999999999998754
No 405
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=38.95 E-value=1.3e+02 Score=28.58 Aligned_cols=78 Identities=6% Similarity=-0.037 Sum_probs=43.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
.++|+++.. .. ..++..++.++...|.++.++++..-.................|..+......... ..+.|+
T Consensus 156 g~~ia~vGD-~~----~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea--~~~aDv 228 (336)
T PRK03515 156 EMTLAYAGD-AR----NNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEG--VKGADF 228 (336)
T ss_pred CCEEEEeCC-Cc----CcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHH--hCCCCE
Confidence 578999875 21 13688888888899999999997654322222211112222334333222222221 246788
Q ss_pred EEEcc
Q 011954 154 VVLNT 158 (474)
Q Consensus 154 V~~~~ 158 (474)
|+...
T Consensus 229 vytd~ 233 (336)
T PRK03515 229 IYTDV 233 (336)
T ss_pred EEecC
Confidence 88754
No 406
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=38.93 E-value=2.6e+02 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=21.5
Q ss_pred ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 394 MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 394 ~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+.+.-|...+++.|-. .+-+-+++.++..
T Consensus 90 ~~alr~Gv~DYLiKPf~--~eRl~~aL~~y~~ 119 (224)
T COG4565 90 KEALRYGVVDYLIKPFT--FERLQQALTRYRQ 119 (224)
T ss_pred HHHHhcCchhheeccee--HHHHHHHHHHHHH
Confidence 44444555677888877 8889888888764
No 407
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=38.91 E-value=1.2e+02 Score=30.46 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=42.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchh--ccc---eeeeehhcHHHHhhh
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKML--DRG---VQVLSAKGEKAINTA 148 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 148 (474)
++|||++.. | .....+++++++.|+++.+++...+........ .+... ... -.+.....+..+.+.
T Consensus 5 ~~~vLi~~~-----g--eia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~--aD~~~~i~p~~~~~~y~d~~~i~~~a~~ 75 (467)
T PRK12833 5 IRKVLVANR-----G--EIAVRIIRAARELGMRTVAACSDADRDSLAARM--ADEAVHIGPSHAAKSYLNPAAILAAARQ 75 (467)
T ss_pred CcEEEEECC-----c--HHHHHHHHHHHHcCCeEEEEECCCCCCChhHHh--CCEEEecCCCCccccccCHHHHHHHHHH
Confidence 568888764 2 567889999999999998877543321111100 10000 000 011222345556677
Q ss_pred cCCCEEEEcc
Q 011954 149 LNADLVVLNT 158 (474)
Q Consensus 149 ~~~DiV~~~~ 158 (474)
.++|.||...
T Consensus 76 ~~~daI~pg~ 85 (467)
T PRK12833 76 CGADAIHPGY 85 (467)
T ss_pred hCCCEEEECC
Confidence 8899999753
No 408
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=38.88 E-value=65 Score=29.10 Aligned_cols=34 Identities=29% Similarity=0.113 Sum_probs=26.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
.+|++++-.-+.||= -.-+++.|.++|++|.++.
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEE
Confidence 469999887666663 4556788999999999998
No 409
>PRK04155 chaperone protein HchA; Provisional
Probab=38.83 E-value=1.4e+02 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.1
Q ss_pred cCEEEEEecCCC----------CCChh-HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELS----------LSGGP-LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~----------~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
.||||+|..... ..|.+ .-+..-...|.+.|++|++++..+
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 458999987521 23442 345555688999999999999754
No 410
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=38.80 E-value=1.5e+02 Score=28.85 Aligned_cols=86 Identities=20% Similarity=0.129 Sum_probs=52.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CC
Q 011954 281 RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--ID 358 (474)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--ad 358 (474)
..++.+.+.+..+++ +.+.+++++.. ...++++.... ..+.++.-.+.+.++.+. +|
T Consensus 35 a~~n~~~l~~q~~~f------------~p~~v~i~~~~-----~~~~l~~~l~~----~~~~v~~G~~~~~~l~~~~~vD 93 (385)
T PRK05447 35 AGKNVELLAEQAREF------------RPKYVVVADEE-----AAKELKEALAA----AGIEVLAGEEGLCELAALPEAD 93 (385)
T ss_pred cCCCHHHHHHHHHHh------------CCCEEEEcCHH-----HHHHHHHhhcc----CCceEEEChhHHHHHhcCCCCC
Confidence 357888887766654 23666777642 34455443321 123333334567777764 58
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 359 VLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 359 v~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
++|.... +...-...++|+.+|++|...+
T Consensus 94 ~Vv~Ai~--G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 94 VVVAAIV--GAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred EEEEeCc--CcccHHHHHHHHHCCCcEEEeC
Confidence 8888775 3322246889999999998865
No 411
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.77 E-value=37 Score=29.59 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.3
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 77 VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.++++. ++-.|-..+..+|++.|++.+|+|..++..
T Consensus 3 LiIlTG-yPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTG-YPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEec-CCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 444443 444555789999999999999999988753
No 412
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=38.76 E-value=1.2e+02 Score=29.57 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=40.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
+|+|+++.. | .....++.++.+.|++|.++........... .+.. .............+.+..++|.
T Consensus 12 ~~~ilIiG~-----g--~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~----ad~~--~~~~~~d~~~l~~~~~~~~id~ 78 (395)
T PRK09288 12 ATRVMLLGS-----G--ELGKEVAIEAQRLGVEVIAVDRYANAPAMQV----AHRS--HVIDMLDGDALRAVIEREKPDY 78 (395)
T ss_pred CCEEEEECC-----C--HHHHHHHHHHHHCCCEEEEEeCCCCCchHHh----hhhe--EECCCCCHHHHHHHHHHhCCCE
Confidence 568998753 2 3556677888999999998886543211111 0000 0001111223444556678999
Q ss_pred EEEcc
Q 011954 154 VVLNT 158 (474)
Q Consensus 154 V~~~~ 158 (474)
|+...
T Consensus 79 vi~~~ 83 (395)
T PRK09288 79 IVPEI 83 (395)
T ss_pred EEEee
Confidence 98754
No 413
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=38.69 E-value=1.7e+02 Score=22.87 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcC-CEEE
Q 011954 283 KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASI-DVLV 361 (474)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~a-dv~v 361 (474)
.|....++++++ ...+|+|+.+.... .+....+..+++..+++ +.+.+..+++-...... .+.+
T Consensus 29 ~G~~~v~kaikk------------gka~LVilA~D~s~-~~~~~~i~~lc~~~~Ip--~~~~~sk~eLG~a~Gk~~~~sv 93 (117)
T TIGR03677 29 KGTNEVTKAVER------------GIAKLVVIAEDVEP-PEIVAHLPALCEEKGIP--YVYVKKKEDLGAAAGLEVGAAS 93 (117)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCc-HHHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCCCeEE
Confidence 377777777742 46777777664311 12468899999999886 77777777888877763 4444
Q ss_pred EcCCCCCCCCchHHHH
Q 011954 362 QNSQARGECFGRITIE 377 (474)
Q Consensus 362 ~ps~~~~E~~~~~~~E 377 (474)
+.-. .+|+.-.++.
T Consensus 94 vaI~--d~g~a~~~~~ 107 (117)
T TIGR03677 94 AAIV--DEGKAEELLK 107 (117)
T ss_pred EEEE--chhhhHHHHH
Confidence 4333 4555554443
No 414
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=38.32 E-value=57 Score=29.51 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=28.3
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
|+||+.+.+.-. ..-+..|+++|.+. ++|.|+.+.....
T Consensus 1 M~ILlTNDDGi~---a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGIH---APGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCCC---ChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 689988875322 13488889999888 6999999765543
No 415
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=38.21 E-value=2.7e+02 Score=25.58 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
++++++.+-+. ..+..++++++++.. ....++.+++..+|+++..+. .....-...+++..|++|+
T Consensus 30 ~~~el~aV~dr------~~~~a~~~a~~~g~~------~~~~~~eell~~~D~Vvi~tp--~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 30 PGLTLSAVAVR------DPQRHADFIWGLRRP------PPVVPLDQLATHADIVVEAAP--ASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CCeEEEEEECC------CHHHHHHHHHhcCCC------cccCCHHHHhcCCCEEEECCC--cHHHHHHHHHHHHcCCcEE
Confidence 67788755553 234455666665521 123567777888999998876 4444555678899999999
Q ss_pred EcCCC
Q 011954 387 GTAAG 391 (474)
Q Consensus 387 ~s~~~ 391 (474)
+...+
T Consensus 96 ~~s~g 100 (271)
T PRK13302 96 VLSVG 100 (271)
T ss_pred Eecch
Confidence 76554
No 416
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=38.20 E-value=44 Score=32.09 Aligned_cols=56 Identities=13% Similarity=-0.038 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCEEEcC--CCCcceeeeeCCceeee--cCCCCChHHHHHHHHHHhhCHHHHHHH
Q 011954 374 ITIEAMAFQLPVLGTA--AGGTMEIVVNGTTGLLH--PTGKEGVTPLANNIVKLATHVERRLTM 433 (474)
Q Consensus 374 ~~~EAma~G~PvI~s~--~~g~~e~v~~~~~G~l~--~~~d~~~~~la~~i~~ll~~~~~~~~~ 433 (474)
++.+|+..|+-.|.-. ...+.+++.. +.++. +-.+ +++||+.|..+.+|++++.+.
T Consensus 246 K~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~~df~s--~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 246 KFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHVDDFKS--PKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp HHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEGGGSSS--HHHHHHHHHHHHT-HHHHH--
T ss_pred HHHHHHHCCeEEEEECCEecccccCCCC--CCccchhcCCC--HHHHHHHHHHHhcCHHHHhhh
Confidence 6779999997555443 4455666633 34443 2334 999999999999998877765
No 417
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.97 E-value=64 Score=31.61 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=29.1
Q ss_pred cccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++++||++... |+. ......+++.|.+.|++|.++....
T Consensus 4 l~~k~IllgvT----Gsiaa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVS----GGIAAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEe----CHHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 45678877765 232 3568899999999999999988554
No 418
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.96 E-value=4.1e+02 Score=26.28 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCc--CchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHH--hcC
Q 011954 309 MHAVVVGSDMNA--QTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAM--AFQ 382 (474)
Q Consensus 309 ~~l~i~G~g~~~--~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm--a~G 382 (474)
-.+-|+|..+.. .+....+++++.+++|+..+..|.+.. +++.. +..|++-+..+. ..+..+.++| -+|
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~-~~~A~lniv~~~----~~~~~~a~~L~~~~G 237 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNE-LPKAWFNIVPYR----EYGLSAALYLEEEFG 237 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHh-hhhCeEEEEecH----HHHHHHHHHHHHHhC
Confidence 457788864321 134678999999999998888887753 44433 344455444332 1356666666 479
Q ss_pred CCEEEc
Q 011954 383 LPVLGT 388 (474)
Q Consensus 383 ~PvI~s 388 (474)
+|.+..
T Consensus 238 iP~~~~ 243 (430)
T cd01981 238 MPSVKI 243 (430)
T ss_pred CCeEec
Confidence 998755
No 419
>PLN02572 UDP-sulfoquinovose synthase
Probab=37.89 E-value=70 Score=31.85 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=23.4
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
++|+|++.. |..-.=..|++.|.++|++|.++.
T Consensus 46 ~~k~VLVTG------atGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIG------GDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEEC------CCcHHHHHHHHHHHHCCCeEEEEe
Confidence 356776553 333455678888999999999875
No 420
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.59 E-value=1.6e+02 Score=23.01 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=9.5
Q ss_pred CeEEEeCCCCccc
Q 011954 231 ETYVVHLGNSKDL 243 (474)
Q Consensus 231 ki~vi~ngvd~~~ 243 (474)
-..|++.|.+...
T Consensus 27 G~~vi~lG~~vp~ 39 (122)
T cd02071 27 GFEVIYTGLRQTP 39 (122)
T ss_pred CCEEEECCCCCCH
Confidence 3679999987653
No 421
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.53 E-value=70 Score=24.52 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=24.7
Q ss_pred cccCEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|.++||+++|. +|.. ..+..+-....+.|.++.|-.
T Consensus 1 m~~kkIllvC~----~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCS----AGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECC----CCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34678999997 3332 344477777788998887755
No 422
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=37.48 E-value=54 Score=28.20 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=27.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||||+|.+.- .+..++++.|++.|+++.++...
T Consensus 2 ~~iliid~~d------sf~~~i~~~l~~~g~~~~v~~~~ 34 (190)
T PRK06895 2 TKLLIINNHD------SFTFNLVDLIRKLGVPMQVVNVE 34 (190)
T ss_pred cEEEEEeCCC------chHHHHHHHHHHcCCcEEEEECC
Confidence 7899999754 46777999999999999998754
No 423
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=37.40 E-value=69 Score=27.48 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=27.1
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHh-cCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRG-VGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~-~G~~V~v~~~~~~ 115 (474)
||||++... ||. .....++++.|.+ .|++|.++.....
T Consensus 1 ~k~IllgVT----Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 1 MKRLIVGIS----GASGAIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CCEEEEEEE----CHHHHHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 356765554 333 3668899999998 5999999986543
No 424
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=37.25 E-value=1.4e+02 Score=28.35 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=28.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
..+||+++..-. . .++..++.++...|.+|.++++..-
T Consensus 155 ~gl~ia~vGD~~--~---~v~~Sl~~~~~~~g~~v~~~~P~~~ 192 (334)
T PRK01713 155 SEISYVYIGDAR--N---NMGNSLLLIGAKLGMDVRICAPKAL 192 (334)
T ss_pred CCcEEEEECCCc--c---CHHHHHHHHHHHcCCEEEEECCchh
Confidence 357899887521 1 2688888999999999999987643
No 425
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=37.15 E-value=57 Score=29.92 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=27.0
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.|.+. +.||.+ ....+|+-+|++.|+.|.++-.+
T Consensus 2 ~~iav~----~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 2 RKVAIY----GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CEEEEe----CCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 345555 268876 56899999999999999999643
No 426
>PRK07714 hypothetical protein; Provisional
Probab=37.08 E-value=1.8e+02 Score=21.94 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEc
Q 011954 284 GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQN 363 (474)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~p 363 (474)
|.+..++++++ ...+++|+.++... ...+.+.++++..+++ +.+.+..+++-..+......+..
T Consensus 22 G~~~v~~al~~------------g~~~lViiA~D~s~--~~~~ki~~~~~~~~vp--~~~~~sk~eLG~a~Gk~~~~~va 85 (100)
T PRK07714 22 GEELVLKEVRS------------GKAKLVLLSEDASV--NTTKKITDKCTYYNVP--MRKVENRQQLGHAIGKDERVVVA 85 (100)
T ss_pred cHHHHHHHHHh------------CCceEEEEeCCCCH--HHHHHHHHHHHhcCCC--EEEeCCHHHHHHHhCCCcceEEE
Confidence 66777777753 45777777764322 3677788888877763 44456667777777655433333
Q ss_pred CCCCCCCCchHHHHH
Q 011954 364 SQARGECFGRITIEA 378 (474)
Q Consensus 364 s~~~~E~~~~~~~EA 378 (474)
-. .+||.-.+++.
T Consensus 86 i~--d~g~a~~l~~~ 98 (100)
T PRK07714 86 VL--DEGFAKKLRSM 98 (100)
T ss_pred Ee--CchhHHHHHHH
Confidence 33 55666555543
No 427
>PRK13530 arsenate reductase; Provisional
Probab=37.02 E-value=1.3e+02 Score=24.16 Aligned_cols=78 Identities=18% Similarity=0.105 Sum_probs=35.8
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHH--hh
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAI--NT 147 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 147 (474)
|+++|||||+... . .=..+|++|.+. |.++.+.+..... ..........+...|+.+.... .+.+ ..
T Consensus 1 ~~~~~vLFvC~~N----~--cRS~mAEal~~~~~~~~~~v~SAG~~~--~~~~~~a~~~l~e~Gi~~~~~~-s~~l~~~~ 71 (133)
T PRK13530 1 MNKKTIYFLCTGN----S--CRSQMAEGWGKQYLGDKWNVYSAGIEA--HGVNPNAIKAMKEVGIDISNQT-SDIIDNDI 71 (133)
T ss_pred CCCCEEEEEcCCc----h--hHHHHHHHHHHHhcCCCEEEECCCCCC--CCCCHHHHHHHHHcCCCcCCCc-cccCChhH
Confidence 4578999999732 1 122334444332 3456555533211 1111222334455566553211 1111 11
Q ss_pred hcCCCEEEEcc
Q 011954 148 ALNADLVVLNT 158 (474)
Q Consensus 148 ~~~~DiV~~~~ 158 (474)
...+|+|++-+
T Consensus 72 ~~~~D~ii~m~ 82 (133)
T PRK13530 72 LNNADLVVTLC 82 (133)
T ss_pred hccCCEEEEec
Confidence 24688888754
No 428
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=36.98 E-value=1.6e+02 Score=22.52 Aligned_cols=63 Identities=25% Similarity=0.241 Sum_probs=37.0
Q ss_pred ChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcH----HHHhhhcCCCEEEEccc
Q 011954 88 GGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGE----KAINTALNADLVVLNTA 159 (474)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~DiV~~~~~ 159 (474)
|..+....+++.|.+.|.+|.++...... ...+...++.++..... ..-....+.|.|++.+.
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~---------~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPER---------VEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHH---------HHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHH---------HHHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence 44578999999999977799999865321 22333344444432211 11122367887777654
No 429
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.95 E-value=60 Score=30.43 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=28.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|+++||+++... ..+.....+..+.+.|.+.|++|.+...
T Consensus 1 ~~~kkv~lI~n~-~~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKA-GSSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeC-CCHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 667889998763 2122235677888889999999988764
No 430
>PLN02928 oxidoreductase family protein
Probab=36.89 E-value=2.8e+02 Score=26.57 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.1
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCC---chHHHHHHhcCCCEEEcCCCCc
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECF---GRITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~---~~~~~EAma~G~PvI~s~~~g~ 393 (474)
..++.++++.||++++......++- +-..+..|--|.-+|-+..|++
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~l 266 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGL 266 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccc
Confidence 4578999999999887322114443 4456777777766777766654
No 431
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.85 E-value=4e+02 Score=25.75 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC---------chHHHHHHHHHHHcCCCCeEEEecCCCChHHHH
Q 011954 284 GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ---------TKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL 354 (474)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~---------~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 354 (474)
.-+.+++.++.+.+ ..++++..|...++. .+....+.+.+++.|+. -+.=.-..+++..+.
T Consensus 130 ~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~-~~t~v~d~~~~~~l~ 199 (360)
T PRK12595 130 SYEQVEAVAKALKA---------KGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA-VISEIVNPADVEVAL 199 (360)
T ss_pred CHHHHHHHHHHHHH---------cCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC-EEEeeCCHHHHHHHH
Confidence 44566777766643 345566555322211 13566788888999874 222222235566666
Q ss_pred hcCCEEEEcCCCCCCCCchHHHHHH-hcCCCEEEcCC
Q 011954 355 ASIDVLVQNSQARGECFGRITIEAM-AFQLPVLGTAA 390 (474)
Q Consensus 355 ~~adv~v~ps~~~~E~~~~~~~EAm-a~G~PvI~s~~ 390 (474)
..+|++-.+|. +..-..+++++ ..|+||+.+.-
T Consensus 200 ~~vd~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 200 DYVDVIQIGAR---NMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HhCCeEEECcc---cccCHHHHHHHHccCCcEEEeCC
Confidence 66999999996 44455666554 56999998863
No 432
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.79 E-value=1.4e+02 Score=26.09 Aligned_cols=130 Identities=14% Similarity=-0.030 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCEEEEcccchhhHHhH
Q 011954 88 GGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADLVVLNTAVAGKWLDG 167 (474)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~ 167 (474)
|++.....-++.|.+.|.+|+|+++...+ -...+...+ .+....+.........+|+|++.+.....-...
T Consensus 16 GgG~va~rk~~~Ll~~ga~VtVvsp~~~~--------~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i 86 (205)
T TIGR01470 16 GGGDVALRKARLLLKAGAQLRVIAEELES--------ELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDEELNRRV 86 (205)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEcCCCCH--------HHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHH
Q ss_pred HhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhc
Q 011954 168 VLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLG 226 (474)
Q Consensus 168 ~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (474)
.....-..+....+..............-...+.-.-..-..+...+..+++.+...++
T Consensus 87 ~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 87 AHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLP 145 (205)
T ss_pred HHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcc
No 433
>PRK03094 hypothetical protein; Provisional
Probab=36.77 E-value=22 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhcCcEEEEEeC
Q 011954 90 PLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|.-+.++.++|+++||+|.=+..
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCc
Confidence 34477899999999999987653
No 434
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.71 E-value=1e+02 Score=27.50 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
-.-..+++.|.+.|++|.++...
T Consensus 13 ~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 13 GIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred hHHHHHHHHHHHCCCEEEEEecC
Confidence 45677888899999999887644
No 435
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=36.61 E-value=2.5e+02 Score=23.27 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-CC----------CChHHHH
Q 011954 286 DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-KT----------LTVSPYL 354 (474)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~----------~~~~~~~ 354 (474)
..++.+..+|.+. ....+..+++|+.+ +..+.+++....+|.+ +|.... .. .-+.+++
T Consensus 18 ~e~l~~A~~La~~------~g~~v~av~~G~~~----~~~~~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~ 86 (164)
T PF01012_consen 18 LEALEAARRLAEA------LGGEVTAVVLGPAE----EAAEALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELI 86 (164)
T ss_dssp HHHHHHHHHHHHC------TTSEEEEEEEETCC----CHHHHHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh------cCCeEEEEEEecch----hhHHHHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHH
Confidence 4556666666442 12478899999633 2677777777778874 555543 21 1244455
Q ss_pred hc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 355 AS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 355 ~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
+. .|++++|+. ..+-.+...=|...|.|+++-
T Consensus 87 ~~~~~~lVl~~~t--~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 87 KEEGPDLVLFGST--SFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHHT-SEEEEESS--HHHHHHHHHHHHHHT-EEEEE
T ss_pred HhcCCCEEEEcCc--CCCCcHHHHHHHHhCCCccce
Confidence 55 899999987 666677777888889988765
No 436
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=36.49 E-value=1.5e+02 Score=25.85 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=29.9
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHH-cCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAE-KKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
....+++|+...-..+.-.++.+.+++ .++ +-+.|.|..+.+. ..+|.+++||.
T Consensus 24 gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~l-Pvilfp~~~~~i~---~~aD~~~~~sl 78 (205)
T TIGR01769 24 GTDAIMVGGSLGIVESNLDQTVKKIKKITNL-PVILFPGNVNGLS---RYADAVFFMSL 78 (205)
T ss_pred CCCEEEEcCcCCCCHHHHHHHHHHHHhhcCC-CEEEECCCccccC---cCCCEEEEEEe
Confidence 356677774321121233334444555 444 3566777654433 56999999986
No 437
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=36.42 E-value=1.3e+02 Score=26.67 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=53.5
Q ss_pred CChHHHHhcCCEEEEcCCCCCC-------CCchHHHHHHhcCCCEEEcCCCCccee-------eeeCCceeeecCCCCCh
Q 011954 348 LTVSPYLASIDVLVQNSQARGE-------CFGRITIEAMAFQLPVLGTAAGGTMEI-------VVNGTTGLLHPTGKEGV 413 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E-------~~~~~~~EAma~G~PvI~s~~~g~~e~-------v~~~~~G~l~~~~d~~~ 413 (474)
+++.+-|..+|++++=-..... .+-..+=.....|+++|.|......++ ...-..|+.++-...|.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 3455668999999974320011 111122245678999987753333332 11112455554333225
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011954 414 TPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVL 462 (474)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 462 (474)
+...+.+.+.... ..-.+.+...+++.+++. +-.+.+..++.++.
T Consensus 169 ~~r~~il~~~a~~--~~~~l~~~v~~~l~~~~~--~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 169 EDRRRILQKKAKE--RGIELPEEVIEYLARRFR--RDVRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHHHHHH--TT--S-HHHHHHHHHHTT--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCcHHHHHHHHHhhc--CCHHHHHHHHHHHH
Confidence 6666666666542 122356666667766543 23344455554443
No 438
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=36.20 E-value=4.3e+02 Score=25.96 Aligned_cols=156 Identities=10% Similarity=0.058 Sum_probs=78.7
Q ss_pred HHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc--cCcchHHHHHHHH
Q 011954 216 YWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS--RGKGQDLFLHSFY 293 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~--~~Kg~~~ll~a~~ 293 (474)
.+.+.+.+......+++.+|....-.+..-.+-... -.++++++++ +++.+....+. ...|.+..++++.
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v-----~~~~~~~~~~---~vi~v~t~gf~g~~~~G~~~a~~~l~ 144 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAV-----CKTASEKFGI---PVIPVHSPGFVGNKNLGNKLACEALL 144 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHH-----HHHHHHhhCC---CEEEEECCCcccChhHHHHHHHHHHH
Confidence 333333333333335555665555555544333222 2334444432 23333333332 2457776766665
Q ss_pred HHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCC
Q 011954 294 ESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECF 371 (474)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~ 371 (474)
+......+.. ...+-.+-|+|+... .....+++++.+++|+..+..|.+.. +++.. +..|.+-+..+. ..
T Consensus 145 ~~l~~~~~~~-~~~~~~VNiig~~~~--~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~~~----~~ 216 (410)
T cd01968 145 DHVIGTEEPE-PLTPYDINLIGEFNV--AGELWGVKPLLEKLGIRVLASITGDSRVDEIRR-AHRAKLNVVQCS----KS 216 (410)
T ss_pred HHhcCCCCcc-cCCCCcEEEECCCCC--cccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-hhhCcEEEEEch----hH
Confidence 4432100000 001456788886432 12457899999999998777777652 44444 334444443322 13
Q ss_pred chHHHHHH--hcCCCEEE
Q 011954 372 GRITIEAM--AFQLPVLG 387 (474)
Q Consensus 372 ~~~~~EAm--a~G~PvI~ 387 (474)
+..+.+.| -+|+|.+.
T Consensus 217 ~~~~a~~L~~~fGip~~~ 234 (410)
T cd01968 217 MIYLARKMEEKYGIPYIE 234 (410)
T ss_pred HHHHHHHHHHHhCCCeEe
Confidence 45567766 47999885
No 439
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=36.20 E-value=1.2e+02 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=26.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.+|||++.. ......+++++.+.|++|.++...
T Consensus 1 ~~~~ililg~-------g~~~~~~~~~a~~lG~~~v~~~~~ 34 (450)
T PRK06111 1 MFQKVLIANR-------GEIAVRIIRTCQKLGIRTVAIYSE 34 (450)
T ss_pred CcceEEEECC-------cHHHHHHHHHHHHcCCeEEEEech
Confidence 3678888864 245788889999999999998754
No 440
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=36.18 E-value=4.7e+02 Score=26.39 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc--cCcchHHHHHHHHH-HHHHHHHhccCC
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS--RGKGQDLFLHSFYE-SLQLIREKKLQV 306 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~--~~Kg~~~ll~a~~~-l~~~~~~~~~~~ 306 (474)
+++.+|....-.+..-.+-... -.++++++++ +++.+....+. ...|.+...+++.+ +....... ..
T Consensus 120 P~~I~V~tTC~~~lIGdDi~~v-----~~~~~~~~~~---pvi~v~t~Gf~g~~~~G~~~a~~al~~~l~~~~~~~--~~ 189 (475)
T PRK14478 120 PPAVFVYQTCVVALIGDDIDAV-----CKRAAEKFGI---PVIPVNSPGFVGNKNLGNKLAGEALLDHVIGTVEPE--DT 189 (475)
T ss_pred CCEEEEeCCChHHHhccCHHHH-----HHHHHHhhCC---CEEEEECCCcccchhhhHHHHHHHHHHHHhccCCcc--CC
Confidence 4566666555455544333222 1234444432 23333322232 34688877776654 33211100 11
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh--cC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMA--FQ 382 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma--~G 382 (474)
.+-.+.|+|+.... ....+++++.+++|+..+..|.|. .+++.. +..|.+-|..+. ..+..+.|.|. +|
T Consensus 190 ~~~~VNiiG~~~~~--gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv~~~----~~~~~~A~~L~erfG 262 (475)
T PRK14478 190 TPYDINILGEYNLA--GELWQVKPLLDRLGIRVVACITGDARYDDVAS-AHRARANMMVCS----GAMINLARKMEERYG 262 (475)
T ss_pred CCCeEEEEeCCCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHh-cccCcEEEEEcH----HHHHHHHHHHHHHhC
Confidence 23467788864221 245789999999999777667664 245544 455555443322 13445566654 58
Q ss_pred CCEEE
Q 011954 383 LPVLG 387 (474)
Q Consensus 383 ~PvI~ 387 (474)
+|.+.
T Consensus 263 iP~~~ 267 (475)
T PRK14478 263 IPFFE 267 (475)
T ss_pred CCEEe
Confidence 99874
No 441
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=36.15 E-value=1.6e+02 Score=27.97 Aligned_cols=37 Identities=5% Similarity=-0.071 Sum_probs=28.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
.++|+++.... ..++..++..+...|.+|.++++..-
T Consensus 156 gl~va~vGD~~-----~~v~~S~~~~~~~~G~~v~~~~P~~~ 192 (334)
T PRK12562 156 EMTLVYAGDAR-----NNMGNSMLEAAALTGLDLRLVAPQAC 192 (334)
T ss_pred CcEEEEECCCC-----CCHHHHHHHHHHHcCCEEEEECCccc
Confidence 57888887531 14788888889999999999997653
No 442
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=36.00 E-value=3.4e+02 Score=24.69 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=27.7
Q ss_pred ChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--cCCCEEEc
Q 011954 349 TVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--FQLPVLGT 388 (474)
Q Consensus 349 ~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~G~PvI~s 388 (474)
++.+.+. ..|+++-.|.- ...|.--++++|+ +..|+|-.
T Consensus 97 ~L~eav~~~kptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRV-GGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCC-CCCCCHHHHHHHhhcCCCCEEEE
Confidence 5666677 88999987752 3457777888888 55677754
No 443
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.86 E-value=1.7e+02 Score=26.06 Aligned_cols=71 Identities=13% Similarity=0.024 Sum_probs=41.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
..||.|+-. +.=|...++.-+..+.+.+ +.+|.+++....-....... ........++||
T Consensus 2 vvKiGiiKl--GNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~-----------------~~~~~~~~~~pD 62 (277)
T PRK00994 2 VVKIGIIKL--GNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEE-----------------VVKKMLEEWKPD 62 (277)
T ss_pred eEEEEEEEe--cccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHH-----------------HHHHHHHhhCCC
Confidence 457777763 2334456666666666665 78999998654322211110 123344568899
Q ss_pred EEEEcccchhh
Q 011954 153 LVVLNTAVAGK 163 (474)
Q Consensus 153 iV~~~~~~~~~ 163 (474)
+++.-+|.++.
T Consensus 63 f~i~isPN~a~ 73 (277)
T PRK00994 63 FVIVISPNPAA 73 (277)
T ss_pred EEEEECCCCCC
Confidence 98887765443
No 444
>PRK09483 response regulator; Provisional
Probab=35.84 E-value=2.8e+02 Score=23.70 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHh---cCCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 357 IDVLVQNSQARGECFGRITIEAMA---FQLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.|++++-... .+..|..+++.+. ...|+|....... ...+..|..|++..+.+ .+++..++..++.
T Consensus 48 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~--~~~l~~~i~~~~~ 120 (217)
T PRK09483 48 VDVVLMDMNM-PGIGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAA--PQEVVSAIRSVHS 120 (217)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHC
Confidence 5777764331 3445666666553 3467665432221 23345577899998887 8999999988876
No 445
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=35.63 E-value=72 Score=24.84 Aligned_cols=39 Identities=3% Similarity=-0.083 Sum_probs=29.2
Q ss_pred EEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 76 LVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 76 kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
||+|+....|.|+. .+-..+++.++...+++|.++....
T Consensus 1 kil~i~~~~Pyg~~~~~e~l~~al~~aa~~~eV~vff~~D 40 (116)
T TIGR03010 1 KLAFVFRQAPHGTASGREGLDALLAASAFDEDIGVFFIDD 40 (116)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHHHHHhccCCeEEEEech
Confidence 58888887666553 3557777888888889999887543
No 446
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=35.31 E-value=3.1e+02 Score=24.98 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=48.9
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHH----cCCC-----CeEEEecCC---------------------------C
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAE----KKIQ-----DHVHFVNKT---------------------------L 348 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~----~~l~-----~~v~~~g~~---------------------------~ 348 (474)
+-.+.+++++|.|. -.--+.+++.. .|+. .++.+.... .
T Consensus 22 ~l~d~riv~~GAGs-----Ag~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~ 96 (255)
T PF03949_consen 22 KLSDQRIVFFGAGS-----AGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWG 96 (255)
T ss_dssp -GGG-EEEEEB-SH-----HHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--S
T ss_pred CHHHcEEEEeCCCh-----hHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccccc
Confidence 34688999999984 33333333333 3885 677766410 1
Q ss_pred ChHHHHhcC--CEEEEcCCCCCCCCchHHHHHHhc--CCCEEEc
Q 011954 349 TVSPYLASI--DVLVQNSQARGECFGRITIEAMAF--QLPVLGT 388 (474)
Q Consensus 349 ~~~~~~~~a--dv~v~ps~~~~E~~~~~~~EAma~--G~PvI~s 388 (474)
++.+.+..+ |++|-.|.. ...|.--++++|+. ..|+|-.
T Consensus 97 ~L~eav~~~kPtvLIG~S~~-~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQ-GGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp SHHHHHHCH--SEEEECSSS-TTSS-HHHHHHCHHHSSSEEEEE
T ss_pred CHHHHHHhcCCCEEEEecCC-CCcCCHHHHHHHhccCCCCEEEE
Confidence 677778888 999998842 66677789999875 5677754
No 447
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=35.19 E-value=90 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=29.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
..||+.++...+-.|-.....+|+.+|++.|..|.++-.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 356666665444455568899999999999999999864
No 448
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=35.16 E-value=2.2e+02 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.6
Q ss_pred EEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|..|.+ ...||.+ -.+..|++.|.++|+.|.|++..++
T Consensus 58 VIsVGN-itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 97 (338)
T PRK01906 58 VVVVGN-VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG 97 (338)
T ss_pred EEEECC-ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 555554 6777776 5688999999999999999995544
No 449
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.06 E-value=4.4e+02 Score=25.75 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=70.6
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccccc--CcchHHHHHHHHHHHHHHHHhccCCC
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSR--GKGQDLFLHSFYESLQLIREKKLQVP 307 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~--~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (474)
+++.+|....-.+..-.+-+... .+++++.+. +.+.+....+.. .+|.+.+++++..... +. ..+
T Consensus 88 P~~I~V~sTCv~e~IGDDi~~v~-----~~~~~~~~~---pvi~v~t~gf~g~~~~G~~~~~~alv~~~~---~~--~~~ 154 (396)
T cd01979 88 PSVIFLIGSCTTEVIKMDLEGAA-----PRLSAEIGV---PILVASASGLDYTFTQGEDTVLAALVPRCP---EK--PSP 154 (396)
T ss_pred CCEEEEECCCHHHHHhcCHHHHH-----HHHhhcCCC---cEEEeeCCCccccHHHHHHHHHHHHhhhcc---cc--cCC
Confidence 55777776665555443332221 223333322 222222222322 4567777777765432 10 113
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH--hcCCCE
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM--AFQLPV 385 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm--a~G~Pv 385 (474)
+-.+.++|.-+. ....+++++.+++|+..+..+.+ .++.++-+.....++... ..+.....+.| -+|+|.
T Consensus 155 ~~~VnliG~~~~---~d~~el~~lL~~~Gi~v~~~~~d--~~~~~~~~~~~a~~~~~~---~~~~~~~A~~Le~r~giP~ 226 (396)
T cd01979 155 ERSLVLVGSLPD---IVEDQLRRELEQLGIPVVGFLPP--RRYTDLPVIGPGTYVLGI---QPFLSRTATTLMRRRKCKL 226 (396)
T ss_pred CCceEEEEeCCc---chHHHHHHHHHHcCCeEEEEeCC--CChHHhhccCcceEEEEe---ChhHHHHHHHHHHhcCCCc
Confidence 345688997543 24688999999999965434432 345555443332222111 11233556666 468888
Q ss_pred EEcCC
Q 011954 386 LGTAA 390 (474)
Q Consensus 386 I~s~~ 390 (474)
+..+.
T Consensus 227 ~~~~~ 231 (396)
T cd01979 227 LSAPF 231 (396)
T ss_pred ccCCc
Confidence 76543
No 450
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=35.06 E-value=2.2e+02 Score=25.99 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=31.3
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
.++.++...+|++|-.|. .+..--.+..|+..|+|+|+...|
T Consensus 60 ~d~~~l~~~~DvVIdfT~--p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 60 DDLEAVETDPDVLIDFTT--PEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CCHHHhcCCCCEEEECCC--hHHHHHHHHHHHHCCCCEEEECCC
Confidence 344444356899998886 666666788999999999986554
No 451
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=35.05 E-value=68 Score=27.23 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=26.3
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|||+++... ..|..+.++..+++.|.. |++|.++-.
T Consensus 1 MkilIvY~S-~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYSS-RDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEEC-CCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 577777643 335556778889999988 999988753
No 452
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=35.01 E-value=1.6e+02 Score=29.21 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=36.3
Q ss_pred HcCCCCeEEEecCCCChHHHHhcCC-EEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 334 EKKIQDHVHFVNKTLTVSPYLASID-VLVQNSQARGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 334 ~~~l~~~v~~~g~~~~~~~~~~~ad-v~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
++....+|+++...=+...+++..| |+..+|. .-.||+.||+|+++...+
T Consensus 203 ~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~--------mgfeall~~~~~~~fg~p 253 (671)
T COG3563 203 QLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ--------MGFEALLCGKPLTTFGLP 253 (671)
T ss_pred hhccCceEEEecccCChHHHHHhcceeEEeecc--------ccHHHHhcCCceeeecch
Confidence 3444578888886556667777776 5666775 236999999999998644
No 453
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=34.98 E-value=98 Score=27.56 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=22.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
.++|++... ..-.=..+++.|.+.|++|.++..
T Consensus 5 ~k~vlItGa------s~gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 5 GKVALVTGA------NTGLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CCEEEEECC------CchHHHHHHHHHHHCCCEEEEEcC
Confidence 455655532 223566788889999999988874
No 454
>PRK10481 hypothetical protein; Provisional
Probab=34.79 E-value=2.3e+02 Score=25.19 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=20.6
Q ss_pred hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC
Q 011954 355 ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA 390 (474)
Q Consensus 355 ~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~ 390 (474)
..+|++++-.. .-+..+.-.=.-..|+|||.++.
T Consensus 181 ~gaD~Ivl~C~--G~~~~~~~~le~~lg~PVI~~n~ 214 (224)
T PRK10481 181 QGADVIVLDCL--GYHQRHRDLLQKALDVPVLLSNV 214 (224)
T ss_pred CCCCEEEEeCC--CcCHHHHHHHHHHHCcCEEcHHH
Confidence 36899887654 22222222234568999998874
No 455
>PRK12862 malic enzyme; Reviewed
Probab=34.76 E-value=4.6e+02 Score=28.34 Aligned_cols=76 Identities=12% Similarity=0.213 Sum_probs=54.3
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecC------------------------CCChHHHHhcCCE
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNK------------------------TLTVSPYLASIDV 359 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~------------------------~~~~~~~~~~adv 359 (474)
+-.+.++++.|.|. -.-.+.++....|+. .++.+... ...+.+.+..+|+
T Consensus 190 ~~~~~~iv~~GaGa-----ag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v 264 (763)
T PRK12862 190 DIEDVKLVASGAGA-----AALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADV 264 (763)
T ss_pred ChhhcEEEEEChhH-----HHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCE
Confidence 44678999999885 444555666667775 36655430 1346777888999
Q ss_pred EEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 360 LVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 360 ~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
|+-.|. ...|.--+++.|+ ..|+|-.
T Consensus 265 ~iG~s~--~g~~~~~~v~~M~-~~piifa 290 (763)
T PRK12862 265 FLGLSA--AGVLKPEMVKKMA-PRPLIFA 290 (763)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 999887 5677788999998 7888854
No 456
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=34.17 E-value=2.3e+02 Score=26.96 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=27.8
Q ss_pred cCEEEEEecCCCCCC--hhHHHHHHHHHHHhcCcEEEEEeC-CC
Q 011954 74 SKLVLLVSHELSLSG--GPLLLMELAFLLRGVGAEVVWITN-QK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG--~~~~~~~l~~~L~~~G~~V~v~~~-~~ 114 (474)
.+||+++...- |. ..+++..++..+...|.+|.++++ ..
T Consensus 169 g~ki~i~~~gd--~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 210 (335)
T PRK04523 169 GKKYVLTWTYH--PKPLNTAVANSALLIATRLGMDVTLLCPTPD 210 (335)
T ss_pred CCEEEEEEecc--CcccccHHHHHHHHHHHHcCCEEEEECCchh
Confidence 56787653211 11 137899999999999999999998 54
No 457
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=34.15 E-value=2.1e+02 Score=26.88 Aligned_cols=37 Identities=16% Similarity=-0.025 Sum_probs=29.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
...||+++.. . .+.+..++..|...|.+|.++++..-
T Consensus 151 ~gl~i~~vGd---~---~~v~~Sl~~~l~~~g~~v~~~~P~~~ 187 (304)
T PRK00779 151 KGLKVAWVGD---G---NNVANSLLLAAALLGFDLRVATPKGY 187 (304)
T ss_pred CCcEEEEEeC---C---CccHHHHHHHHHHcCCEEEEECCccc
Confidence 3578999875 1 25789999999999999999997643
No 458
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=34.00 E-value=1.8e+02 Score=27.82 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=23.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|++|||+...+ ||....+. |..|.++||||.-++.
T Consensus 1 ~~~~kV~v~mS----GGVDSSVa--A~lLk~QGyeViGl~m 35 (356)
T COG0482 1 MKKKKVLVGMS----GGVDSSVA--AYLLKEQGYEVIGLFM 35 (356)
T ss_pred CCCcEEEEEcc----CCHHHHHH--HHHHHHcCCeEEEEEE
Confidence 46788887775 66543222 3356789999998883
No 459
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=33.78 E-value=1.6e+02 Score=26.98 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=26.7
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|..|.+ ..||+. .+..+|+.+|++.|..|-++-.+
T Consensus 47 k~iI~VlS--GKGGVGKSTvt~nla~~La~~g~~vglLD~D 85 (300)
T KOG3022|consen 47 KHIILVLS--GKGGVGKSTVTVNLALALASEGKKVGLLDAD 85 (300)
T ss_pred ceEEEEEe--CCCCCchhHHHHHHHHHHhcCCCcEEEEeec
Confidence 44444442 346664 78999999999999999988643
No 460
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=33.66 E-value=56 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHhcCCEEEEcCCCCCCCCchHHHH---HHhcCCCEEEcCC
Q 011954 352 PYLASIDVLVQNSQARGECFGRITIE---AMAFQLPVLGTAA 390 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~~~~~~E---Ama~G~PvI~s~~ 390 (474)
..+..||++|..-.. ...-+-+.+| |.+.|+||++-..
T Consensus 57 ~~i~~~D~via~l~~-~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 57 EGIRECDIVIANLDG-FRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHSSEEEEEECS-SS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHCCEEEEECCC-CCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 568899998875431 1122345565 7889999988643
No 461
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.58 E-value=1.6e+02 Score=29.54 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=29.9
Q ss_pred cccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
...+||++... ||.. ....++++.|.+.|++|.++....
T Consensus 68 l~~k~IllgVt----GsIAayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 68 LASKRVTLIIG----GGIAAYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred cCCCEEEEEEc----cHHHHHHHHHHHHHHHhCcCEEEEEECcC
Confidence 34678887765 4443 568899999999999999988553
No 462
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.30 E-value=86 Score=23.95 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=25.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|||++|...- +....+..+-+.+.++|.++.+-...
T Consensus 1 MkkILlvCg~G~--STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 1 MKKALIICAAGM--SSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred CcEEEEECCCch--HHHHHHHHHHHHHHHCCCceEEEEec
Confidence 368999986321 12356667777778899998876543
No 463
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=33.25 E-value=73 Score=30.81 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=26.8
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
..|+|++. ||....=..+++.|.++||+|+.+...
T Consensus 20 ~~~~IlVt------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 35788876 444467778899999999999998743
No 464
>PRK06932 glycerate dehydrogenase; Provisional
Probab=33.14 E-value=1.9e+02 Score=27.18 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC---------CCChHHHHhcCCEEEE--cCCCCCCC---Cch
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK---------TLTVSPYLASIDVLVQ--NSQARGEC---FGR 373 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---------~~~~~~~~~~adv~v~--ps~~~~E~---~~~ 373 (474)
+-.+-|+|-|. ....+.+.++.+|. +|..... ..++.++++.||++++ |.. .++ ++-
T Consensus 147 gktvgIiG~G~-----IG~~va~~l~~fg~--~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt--~~T~~li~~ 217 (314)
T PRK06932 147 GSTLGVFGKGC-----LGTEVGRLAQALGM--KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLT--ETTQNLINA 217 (314)
T ss_pred CCEEEEECCCH-----HHHHHHHHHhcCCC--EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCC--hHHhcccCH
Confidence 34666777663 55666666666554 3433321 2367899999999886 433 444 455
Q ss_pred HHHHHHhcCCCEEEcCCCCc
Q 011954 374 ITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 374 ~~~EAma~G~PvI~s~~~g~ 393 (474)
..++.|--|.-+|-+..|++
T Consensus 218 ~~l~~mk~ga~lIN~aRG~~ 237 (314)
T PRK06932 218 ETLALMKPTAFLINTGRGPL 237 (314)
T ss_pred HHHHhCCCCeEEEECCCccc
Confidence 67788877877887777765
No 465
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=32.87 E-value=65 Score=29.54 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=26.9
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.|.+. ..||.+ ....+|+-+|+++|+.|.++-.+
T Consensus 2 ~~iav~----gKGGVGKTT~a~nLA~~La~~G~rVllvD~D 38 (273)
T PRK13232 2 RQIAIY----GKGGIGKSTTTQNLTAALSTMGNKILLVGCD 38 (273)
T ss_pred CEEEEE----CCCCCcHHHHHHHHHHHHHhhCCCeEEEecc
Confidence 345554 367776 66899999999999999999643
No 466
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.84 E-value=2.6e+02 Score=23.61 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=29.8
Q ss_pred CChHHHHhcCCEEEE--cCCCCCCC---CchHHHHHHhcCCCEEEcCCCCc
Q 011954 348 LTVSPYLASIDVLVQ--NSQARGEC---FGRITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 348 ~~~~~~~~~adv~v~--ps~~~~E~---~~~~~~EAma~G~PvI~s~~~g~ 393 (474)
.++.++++.||++++ |.. .++ ++-..++.|--|.-+|-+..|++
T Consensus 83 ~~l~ell~~aDiv~~~~plt--~~T~~li~~~~l~~mk~ga~lvN~aRG~~ 131 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLT--PETRGLINAEFLAKMKPGAVLVNVARGEL 131 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSS--TTTTTSBSHHHHHTSTTTEEEEESSSGGG
T ss_pred eehhhhcchhhhhhhhhccc--cccceeeeeeeeeccccceEEEeccchhh
Confidence 578899999999887 433 444 45567777777776676665543
No 467
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=32.80 E-value=1.7e+02 Score=26.21 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=41.5
Q ss_pred ecccccCc-chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH
Q 011954 276 INSVSRGK-GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL 354 (474)
Q Consensus 276 vgrl~~~K-g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 354 (474)
+--++|.| ..+..+++ +.+ .....+++|+...-..+.-.++.+.+++.++ +-|.|.|..+.+.
T Consensus 11 ~~liDP~k~~~~~~~~~---~~~---------~gtdai~vGGS~~vt~~~~~~~v~~ik~~~l-Pvilfp~~~~~i~--- 74 (232)
T PRK04169 11 VTLLDPDKPLPDEALEA---ICE---------SGTDAIIVGGSDGVTEENVDELVKAIKEYDL-PVILFPGNIEGIS--- 74 (232)
T ss_pred EEEECCCCCCCHHHHHH---HHh---------cCCCEEEEcCCCccchHHHHHHHHHHhcCCC-CEEEeCCCccccC---
Confidence 34567766 44444432 222 3455677776432222234455555666655 4667777654443
Q ss_pred hcCCEEEEcCC
Q 011954 355 ASIDVLVQNSQ 365 (474)
Q Consensus 355 ~~adv~v~ps~ 365 (474)
..+|.+++||.
T Consensus 75 ~~aDa~l~~sv 85 (232)
T PRK04169 75 PGADAYLFPSV 85 (232)
T ss_pred cCCCEEEEEEE
Confidence 34999999986
No 468
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=32.66 E-value=57 Score=20.47 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=13.8
Q ss_pred cccchHHHHHHHHHHHHHHHHhh
Q 011954 14 KKRWQLMILVLFTLSTAMLFFIR 36 (474)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~ 36 (474)
||..+.+++++..+|++.+++.-
T Consensus 2 kk~rwiili~iv~~Cl~lyl~al 24 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVF 24 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHH
Confidence 35444555566667777766654
No 469
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=32.60 E-value=58 Score=27.97 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=44.1
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT-- 347 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-- 347 (474)
..+.+.+..+..-.-..-|++.+. + ++|+.++++....+. ..+..++.... ...+.++...
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~---~-------~~p~~~illT~~T~t----g~~~~~~~~~~---~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLR---K-------QRPDLRILLTTTTPT----GREMARKLLPD---RVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHT---T----------TS-EEEEES-CC----HHHHHHGG-GG---G-SEEE---SSH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHH---H-------hCCCCeEEEEecCCc----hHHHHHHhCCC---CeEEEEeCccCH
Confidence 556666666555444444433332 2 458899998887542 23333333221 1234444421
Q ss_pred CChHHHHhcC--CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 348 LTVSPYLASI--DVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 348 ~~~~~~~~~a--dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
..+..++... |++|.-- .|-+|+-+.+|-..|+|++.-|
T Consensus 85 ~~~~rfl~~~~P~~~i~~E---tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVE---TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHHHH--SEEEEES-------HHHHHH-----S-EEEEE
T ss_pred HHHHHHHHHhCCCEEEEEc---cccCHHHHHHHhhcCCCEEEEe
Confidence 3345555543 8888765 6899999999999999998765
No 470
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=32.50 E-value=1.1e+02 Score=26.66 Aligned_cols=40 Identities=18% Similarity=0.003 Sum_probs=29.2
Q ss_pred CEEEEEecCCC-CCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|||+.|+-.+. .|.....+...++.+.+.|.||.++....
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~ 41 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPE 41 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45555554433 45556888899999999999999998553
No 471
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=32.47 E-value=4.4e+02 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=27.9
Q ss_pred CChHHHHhcCCEEEEcCCC-CCCCCch----HHHHHHhcCCCEEEcCCC
Q 011954 348 LTVSPYLASIDVLVQNSQA-RGECFGR----ITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~-~~E~~~~----~~~EAma~G~PvI~s~~~ 391 (474)
.++...+..||++|...-. -.+-+|. -++-|..+|+|++....|
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 3556679999999985311 0232332 144678899999887543
No 472
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=32.29 E-value=2.5e+02 Score=26.30 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=30.4
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
...||+++... .. .+++..++.+++..|.+|.++++..-
T Consensus 149 ~g~~va~vGD~-~~---~~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 149 DGLKIALVGDL-KY---GRTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred CCCEEEEEccC-CC---CcHHHHHHHHHHHcCCEEEEECCccc
Confidence 35789998742 11 37899999999999999999997654
No 473
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=32.27 E-value=3.3e+02 Score=23.43 Aligned_cols=75 Identities=11% Similarity=-0.020 Sum_probs=43.2
Q ss_pred eEEEecCCCChHHHHhcCCEEE-EcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHH
Q 011954 340 HVHFVNKTLTVSPYLASIDVLV-QNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLAN 418 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~~adv~v-~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (474)
.|.-.+..+++.+.+....+-+ .+.-.-.-..|+-+.+|.-.|.|.++--. ...+++.+|.. ..++.+
T Consensus 67 ~V~~~at~~el~~~l~~~g~~~~~~~g~i~G~~glLl~~a~~~gi~ai~L~~---------e~p~y~pDP~A--A~alL~ 135 (188)
T TIGR00162 67 YVYGAATSPELVEELKEHGVKFREPGGGIIGASGLLLGVSELEGIPGACLMG---------ETPGYMIDPKA--AKAVLE 135 (188)
T ss_pred ceEEEeCCHHHHHHHHhcCCeeecCCCccccHHHHHHHHHHHCCCCeEEEEE---------eCCCCCCChHH--HHHHHH
Confidence 4555555556666666654432 22110011234455589999999887531 12344555655 777888
Q ss_pred HHHHHhh
Q 011954 419 NIVKLAT 425 (474)
Q Consensus 419 ~i~~ll~ 425 (474)
++.+++.
T Consensus 136 ~L~kllg 142 (188)
T TIGR00162 136 VLCKMLS 142 (188)
T ss_pred HHHHHHC
Confidence 8888886
No 474
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=32.10 E-value=2.2e+02 Score=27.15 Aligned_cols=38 Identities=13% Similarity=-0.008 Sum_probs=29.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
...||+++...- ..++..++..+...|.+|.++++..-
T Consensus 154 ~g~~va~vGd~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (331)
T PRK02102 154 KGLKLAYVGDGR-----NNMANSLMVGGAKLGMDVRICAPKEL 191 (331)
T ss_pred CCCEEEEECCCc-----ccHHHHHHHHHHHcCCEEEEECCccc
Confidence 357899886421 24788899999999999999997654
No 475
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.09 E-value=77 Score=26.51 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=44.3
Q ss_pred ChHHHHhcCCEEEEcCCCCCC----CCchHHHHHHhcCCCEEEcC-----CCCcceeeeeCCceee-ecCCCCChHHHHH
Q 011954 349 TVSPYLASIDVLVQNSQARGE----CFGRITIEAMAFQLPVLGTA-----AGGTMEIVVNGTTGLL-HPTGKEGVTPLAN 418 (474)
Q Consensus 349 ~~~~~~~~adv~v~ps~~~~E----~~~~~~~EAma~G~PvI~s~-----~~g~~e~v~~~~~G~l-~~~~d~~~~~la~ 418 (474)
.+...+..||+.+.--....| .|.-.+=|.|-+++|+|++= .+...++- ....-++ .++.+ -+.+.+
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik-~~~~v~v~lt~~N--R~~i~~ 169 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIK-KLGGVYVFLTPEN--RNRILN 169 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhh-hcCCEEEEEccch--hhHHHH
Confidence 345566778999863221122 34556668999999999983 22333332 2223333 55555 567777
Q ss_pred HHHHHhhC
Q 011954 419 NIVKLATH 426 (474)
Q Consensus 419 ~i~~ll~~ 426 (474)
.|..+|..
T Consensus 170 ~Il~~L~~ 177 (179)
T COG1618 170 EILSVLKG 177 (179)
T ss_pred HHHHHhcc
Confidence 77777653
No 476
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.08 E-value=80 Score=28.91 Aligned_cols=23 Identities=17% Similarity=-0.083 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
-.=..+++.|.+.|++|.++...
T Consensus 15 giG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 15 GIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 34566788888999999887643
No 477
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=32.05 E-value=1e+02 Score=26.24 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
....++.+.|.+.|++|.++....
T Consensus 14 ~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 14 YKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChH
Confidence 556799999999999999888543
No 478
>CHL00175 minD septum-site determining protein; Validated
Probab=32.05 E-value=1e+02 Score=28.30 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.+|+.|...-+--|-.....+|+.+|++.|+.|.++-.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3456555543322233478999999999999999988643
No 479
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=31.95 E-value=1.5e+02 Score=21.20 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=27.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.++++.+.+. .-......+++.|.++|+.|..+-..
T Consensus 16 k~~v~i~HG~~--eh~~ry~~~a~~L~~~G~~V~~~D~r 52 (79)
T PF12146_consen 16 KAVVVIVHGFG--EHSGRYAHLAEFLAEQGYAVFAYDHR 52 (79)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 45777777542 11246889999999999999988744
No 480
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=31.64 E-value=3.6e+02 Score=23.71 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=49.4
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-------CCCChHHHHhcCCEEEEcCC--------CCCCCCc
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-------KTLTVSPYLASIDVLVQNSQ--------ARGECFG 372 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-------~~~~~~~~~~~adv~v~ps~--------~~~E~~~ 372 (474)
+.+++++........++.+++.+..+++|.. .+.++- ...++.+.+..+|++++..- +...+.-
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 4455555443222223566677777778764 333332 12456778899999887532 1111223
Q ss_pred hHHHHHHhcCCCEEEcCCCCc
Q 011954 373 RITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~ 393 (474)
-.+-++...|.|++.+..|.+
T Consensus 108 ~~l~~~~~~G~v~~G~SAGA~ 128 (217)
T cd03145 108 DALRKVYRGGVVIGGTSAGAA 128 (217)
T ss_pred HHHHHHHHcCCEEEEccHHHH
Confidence 356677889999998876643
No 481
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.60 E-value=1.1e+02 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=24.2
Q ss_pred cCEEEEEecCCCCCChh--HH-HHHHHHHHHhcCcEEEEEe
Q 011954 74 SKLVLLVSHELSLSGGP--LL-LMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~--~~-~~~l~~~L~~~G~~V~v~~ 111 (474)
++||+++|. +|.. .. ...+-+.|.++|.++.+..
T Consensus 2 k~kILvvCg----sG~~TS~m~~~ki~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 2 KRKIIVACG----GAVATSTMAAEEIKELCQSHNIPVELIQ 38 (94)
T ss_pred CCeEEEECC----CchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 347999996 3332 33 4667788899999988776
No 482
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=31.60 E-value=62 Score=30.48 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=28.6
Q ss_pred CEEEEEecCC---CCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHEL---SLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~---~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|||+|+.... .++. -....|..+.+++||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~--~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGK--DTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCc--ChHHHHHHHHHHcCCEEEEEehhh
Confidence 6899998652 2332 357788899999999999998653
No 483
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.49 E-value=38 Score=22.50 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=13.6
Q ss_pred HHHHHHhcCCCEEEc
Q 011954 374 ITIEAMAFQLPVLGT 388 (474)
Q Consensus 374 ~~~EAma~G~PvI~s 388 (474)
.+.|++..|.||++-
T Consensus 16 kI~esav~G~pVvAL 30 (58)
T PF11238_consen 16 KIAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHHhcCceeEee
Confidence 689999999999975
No 484
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=31.10 E-value=4e+02 Score=24.06 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=58.0
Q ss_pred EEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC-chHHHHHHHHHHHcCCCCeEEEecC----
Q 011954 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ-TKFETELRNFVAEKKIQDHVHFVNK---- 346 (474)
Q Consensus 272 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~-~~~~~~l~~~~~~~~l~~~v~~~g~---- 346 (474)
.++++|-+.-.-|...+-+-+..++++ -++.|+|+..-.... ....++.-+...+.|. ++.-+|.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~k--------yk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~--dviT~GNH~wd 71 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSK--------YKIDFVIVNGENAAGGFGITEKIYKELLEAGA--DVITLGNHTWD 71 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHh--------hcCcEEEEcCccccCCcCCCHHHHHHHHHhCC--CEEeccccccc
Confidence 477889888888888887777777553 356888887532111 1133444444455665 5777784
Q ss_pred CCChHHHHhcCCEEEEcCCC
Q 011954 347 TLTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~ 366 (474)
+.++.+++...+.+|=|...
T Consensus 72 ~~ei~~~i~~~~~ilRP~N~ 91 (266)
T COG1692 72 QKEILDFIDNADRILRPANY 91 (266)
T ss_pred chHHHHHhhcccceeccCCC
Confidence 48899999999999988763
No 485
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=31.08 E-value=1.7e+02 Score=22.15 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=42.2
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec-CCCChHHHHhcCCEEEEcCCCCCCCCchHHHH--HHhcCCCEEE
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN-KTLTVSPYLASIDVLVQNSQARGECFGRITIE--AMAFQLPVLG 387 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g-~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~E--Ama~G~PvI~ 387 (474)
++++..|..++ -.-...++.++..|.+ +.+.- ...++.+++..+|++++... =.|=..-+| +--.|+||-+
T Consensus 5 lLvC~aGmSTS-lLV~Km~~aA~~kg~~--~~I~A~s~~e~~~~~~~~DvvLlGPQ---v~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 5 LLVCAAGMSTS-LLVTKMKKAAESKGKD--VTIEAYSETELSEYIDNADVVLLGPQ---VRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred EEEecCCCcHH-HHHHHHHHHHHhCCCc--eEEEEechhHHHHhhhcCCEEEEChH---HHHHHHHHHHHhcccCCCeEE
Confidence 44555554322 2556777777777753 33333 45788999999999887543 122333333 3334568766
Q ss_pred cC
Q 011954 388 TA 389 (474)
Q Consensus 388 s~ 389 (474)
-|
T Consensus 79 I~ 80 (102)
T COG1440 79 ID 80 (102)
T ss_pred eC
Confidence 54
No 486
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.08 E-value=88 Score=27.90 Aligned_cols=21 Identities=29% Similarity=0.134 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCcEEEEEeC
Q 011954 92 LLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 92 ~~~~l~~~L~~~G~~V~v~~~ 112 (474)
.=..+++.|.+.|++|.+...
T Consensus 17 IG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 17 LGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred HHHHHHHHHHHCCCeEEEEcC
Confidence 445677888899999987654
No 487
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=31.08 E-value=1.3e+02 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHh-cCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (474)
+||+.++..-+--|-.....+||.+|.+ .|+.|.++-..
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4555555333333445779999999986 69999998644
No 488
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=31.03 E-value=20 Score=36.30 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCcEEEEEeC
Q 011954 91 LLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
..+..++++|.++||+|+++++
T Consensus 14 ~~~~~l~~~L~~rGH~VTvl~~ 35 (500)
T PF00201_consen 14 IFMRPLAEELAERGHNVTVLTP 35 (500)
T ss_dssp HHHHHHHHHHHHH-TTSEEEHH
T ss_pred HHHHHHHHHHHhcCCceEEEEe
Confidence 6789999999999999999984
No 489
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=30.87 E-value=1e+02 Score=30.28 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=28.6
Q ss_pred EEEcC-CCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCC
Q 011954 312 VVVGS-DMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 312 ~i~G~-g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~ 365 (474)
+|+|. |.....+.-+.++++++..|....+..+|.. ..+ +.+...|+||+-+-
T Consensus 271 livGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKL-AnF~eIDvfV~iaC 326 (453)
T KOG2648|consen 271 LIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKL-ANFPEIDVFVQIAC 326 (453)
T ss_pred EEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHh-cCCccccEEEEEeC
Confidence 34443 3333334455666666666665556666643 222 23445899997554
No 490
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.81 E-value=1.4e+02 Score=22.70 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=28.1
Q ss_pred cCEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|++|+++|. +|.. ..+..+-++..++|.++.|.....
T Consensus 1 Mk~IlLvC~----aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~ 39 (102)
T COG1440 1 MKKILLVCA----AGMSTSLLVTKMKKAAESKGKDVTIEAYSE 39 (102)
T ss_pred CceEEEEec----CCCcHHHHHHHHHHHHHhCCCceEEEEech
Confidence 578999997 3443 567778888888999999988543
No 491
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=30.69 E-value=1.7e+02 Score=27.55 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=22.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (474)
|||||++.. |. .. .+++.|++.| ++|.++...
T Consensus 1 ~~~vLv~g~-----~~-~~--~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 1 MMNILVTSA-----GR-RV--QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred CceEEEecC-----Cc-cH--HHHHHHHHhccCCEEEEECCC
Confidence 678999875 21 22 7788998884 888887644
No 492
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=30.68 E-value=63 Score=26.83 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=24.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
.++|+++. | +......++.|.+.|++|+|+.+
T Consensus 13 ~~~vlVvG------G-G~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIG------G-GKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEEC------C-CHHHHHHHHHHHhCCCEEEEEcC
Confidence 45666663 3 36788889999999999999964
No 493
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.64 E-value=3.2e+02 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=25.4
Q ss_pred CEEEEEecCCCCCChhH--HHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPL--LLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~--~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|++++ +.||+++ ....++-.|++.|..|.+++..
T Consensus 2 ~riv~f~---GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 2 TRIVFFT---GKGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred cEEEEEe---cCCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4666665 3477765 5666778889999888888633
No 494
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=30.61 E-value=84 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 87 SGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
||....=..+++.|.++|++|+.++....
T Consensus 5 GatG~iG~~l~~~l~~~g~~v~~~~~~~~ 33 (236)
T PF01370_consen 5 GATGFIGSALVRQLLKKGHEVIVLSRSSN 33 (236)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEESCST
T ss_pred ccCCHHHHHHHHHHHHcCCcccccccccc
Confidence 44557778899999999999998876544
No 495
>PLN02240 UDP-glucose 4-epimerase
Probab=30.56 E-value=87 Score=29.79 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=23.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|++++|++.. |....=..+++.|.+.|++|+++..
T Consensus 3 ~~~~~vlItG------atG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTG------GAGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCEEEEEC------CCChHHHHHHHHHHHCCCEEEEEeC
Confidence 3456777653 2234556778888889999998863
No 496
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=30.54 E-value=94 Score=25.88 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=25.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|++|.+++.....--....+.+|.+.|+++|+ .+++
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~--~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGH--ILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCC--EEEc
Confidence 46788888764222224678999999999997 4444
No 497
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.50 E-value=3.7e+02 Score=23.50 Aligned_cols=146 Identities=14% Similarity=0.027 Sum_probs=77.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCC-eEEEecCC--CChHHHHhcCC
Q 011954 282 GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQD-HVHFVNKT--LTVSPYLASID 358 (474)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~~--~~~~~~~~~ad 358 (474)
.|-...|..|+.-+.. + .+-.++++|..+ .....+++.++..|-.. +=+|+|-. +-...-+..=|
T Consensus 49 ~kT~~~L~~A~~~i~~-~-------~~~~ILfVgTk~----~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pd 116 (204)
T PRK04020 49 RKTDERIRIAAKFLSR-Y-------EPEKILVVSSRQ----YGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPD 116 (204)
T ss_pred HHHHHHHHHHHHHHHH-h-------cCCeEEEEeCCH----HHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCC
Confidence 4555555555554433 1 234677888765 34566777777765421 11456521 22222334556
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 359 VLVQNSQARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 359 v~v~ps~~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
++++... ..-..++.||...|+|+|+- |.-.-++.| -+.+|.+|+ .-.-.+.+..++.+.- ..+
T Consensus 117 liiv~dp---~~~~~AI~EA~kl~IP~IaivDTn~dp~~V-----dypIP~Ndd-s~~SI~li~~ll~~aI------l~~ 181 (204)
T PRK04020 117 VVVVTDP---RGDAQAVKEAIEVGIPVVALCDTDNLTSNV-----DLVIPTNNK-GRKALALVYWLLAREI------LRE 181 (204)
T ss_pred EEEEECC---cccHHHHHHHHHhCCCEEEEEeCCCCcccC-----ceeECCCCc-hHHHHHHHHHHHHHHH------HHh
Confidence 6666543 22367899999999999985 333445554 255666653 3344444555543222 122
Q ss_pred HHHHHHhcCHHHHHHHH
Q 011954 438 YERVKDRFLEHHMSQRI 454 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~ 454 (474)
+..+.+.-.|+...+.+
T Consensus 182 kg~~~~~~~~~v~~~~f 198 (204)
T PRK04020 182 RGEIKPDEDLPVPVEDF 198 (204)
T ss_pred hCccCCCCCCCcCHHHH
Confidence 23344445565555544
No 498
>PRK13761 hypothetical protein; Provisional
Probab=30.47 E-value=3.9e+02 Score=23.72 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=57.4
Q ss_pred HhcCCEEEEcCCCCCCCCchHHHHHH-hcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHH
Q 011954 354 LASIDVLVQNSQARGECFGRITIEAM-AFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLT 432 (474)
Q Consensus 354 ~~~adv~v~ps~~~~E~~~~~~~EAm-a~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~ 432 (474)
+..||++++|-- +|= =.||+ .+|+-||+-|.....-.-+ ..-+.- ++.+..++-.+..--...+.
T Consensus 148 Iy~ADVVLVPLE---DGD---R~EaL~~mGK~VI~IDLNPLSRTar---~A~itI-----VDni~RA~p~m~~~~~elk~ 213 (248)
T PRK13761 148 IYSADVVLVPLE---DGD---RTEALVKMGKTVIAIDLNPLSRTAR---TATITI-----VDNITRAVPNMTEYARELKK 213 (248)
T ss_pred ceeccEEEecCC---CCc---HHHHHHHcCCeEEEEeCCCcccccc---cCceee-----ehhHHHHHHHHHHHHHHHhc
Confidence 457899999974 331 23554 5799999998665533221 111111 45666666666553333444
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 433 MGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 433 ~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+.+...+.+.+.|+-+.....-++.+.+-+.
T Consensus 214 ~~~~el~~iv~~~dN~~~L~~al~~I~~rl~ 244 (248)
T PRK13761 214 KDREELEEIVENYDNKKNLSEALKEIRERLT 244 (248)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4445555666779988887777666655443
No 499
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=30.45 E-value=2.6e+02 Score=23.73 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=11.3
Q ss_pred HHHhcCHHHHHHHHHHHHHHHH
Q 011954 441 VKDRFLEHHMSQRIALVLREVL 462 (474)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~~ 462 (474)
+.+.|+.....+-+.+-|.+.+
T Consensus 163 vked~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 163 VKEDFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 4455666555555544444443
No 500
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.22 E-value=1.3e+02 Score=26.54 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc---chhccceeeeehhcHHHHhhh
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH---KMLDRGVQVLSAKGEKAINTA 148 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 148 (474)
+++++|+++ ||....-..+++.|.+.|++|.++..............+.. .+.....++............
T Consensus 3 ~~~~~ilI~------Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 3 LMGKVAIVT------GASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCCCEEEEe------CCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Q ss_pred c-----CCCEEEEc
Q 011954 149 L-----NADLVVLN 157 (474)
Q Consensus 149 ~-----~~DiV~~~ 157 (474)
. ++|+|+..
T Consensus 77 ~~~~~~~id~vi~~ 90 (247)
T PRK05565 77 IVEKFGKIDILVNN 90 (247)
T ss_pred HHHHhCCCCEEEEC
Done!