Query 011954
Match_columns 474
No_of_seqs 377 out of 1591
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c48_A Predicted glycosyltrans 100.0 1.4E-46 4.9E-51 372.7 33.0 370 68-473 14-437 (438)
2 2x6q_A Trehalose-synthase TRET 100.0 1.2E-46 4E-51 370.8 29.0 360 71-462 37-415 (416)
3 3fro_A GLGA glycogen synthase; 100.0 2.6E-46 8.7E-51 370.9 30.2 366 73-465 1-434 (439)
4 3okp_A GDP-mannose-dependent a 100.0 2.5E-46 8.7E-51 365.6 27.7 357 71-467 1-385 (394)
5 2r60_A Glycosyl transferase, g 100.0 2.2E-46 7.7E-51 377.4 26.9 373 74-468 7-466 (499)
6 2jjm_A Glycosyl transferase, g 100.0 2.6E-45 9E-50 358.5 30.0 350 86-466 26-390 (394)
7 3oy2_A Glycosyltransferase B73 100.0 1.6E-44 5.5E-49 355.2 28.6 358 75-466 1-395 (413)
8 1rzu_A Glycogen synthase 1; gl 100.0 3.7E-44 1.3E-48 360.0 26.7 367 75-467 1-481 (485)
9 2qzs_A Glycogen synthase; glyc 100.0 1.1E-43 3.7E-48 356.6 27.9 365 75-466 1-481 (485)
10 2iw1_A Lipopolysaccharide core 100.0 3E-44 1E-48 348.5 19.2 348 75-463 1-373 (374)
11 3vue_A GBSS-I, granule-bound s 100.0 5E-43 1.7E-47 351.7 24.9 366 73-463 8-513 (536)
12 2gek_A Phosphatidylinositol ma 100.0 3.1E-42 1E-46 338.1 25.4 351 73-466 19-388 (406)
13 2iuy_A Avigt4, glycosyltransfe 100.0 1.5E-42 5.2E-47 332.3 22.6 308 72-464 1-338 (342)
14 3s28_A Sucrose synthase 1; gly 100.0 1.1E-41 3.7E-46 352.3 24.1 375 73-462 277-770 (816)
15 2x0d_A WSAF; GT4 family, trans 100.0 8E-39 2.7E-43 312.2 13.9 340 73-463 45-411 (413)
16 2vsy_A XCC0866; transferase, g 100.0 1.8E-35 6.1E-40 302.7 26.9 333 72-465 203-563 (568)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 2.5E-34 8.5E-39 277.6 25.0 320 75-464 7-360 (364)
18 2hy7_A Glucuronosyltransferase 100.0 2.7E-33 9.2E-38 273.4 14.4 239 150-463 124-381 (406)
19 3nb0_A Glycogen [starch] synth 100.0 4E-31 1.4E-35 261.2 24.2 305 149-465 180-637 (725)
20 3beo_A UDP-N-acetylglucosamine 100.0 1.9E-32 6.4E-37 265.5 13.3 345 71-459 5-374 (375)
21 1vgv_A UDP-N-acetylglucosamine 100.0 8.1E-32 2.8E-36 261.9 16.1 353 75-465 1-380 (384)
22 1uqt_A Alpha, alpha-trehalose- 100.0 1.8E-30 6.3E-35 256.1 25.9 218 229-461 218-454 (482)
23 2bfw_A GLGA glycogen synthase; 100.0 9.4E-31 3.2E-35 230.3 18.5 190 235-446 2-200 (200)
24 3qhp_A Type 1 capsular polysac 100.0 5.5E-29 1.9E-33 212.1 15.7 161 270-453 2-166 (166)
25 2xci_A KDO-transferase, 3-deox 100.0 7.1E-29 2.4E-33 239.1 17.2 312 75-447 41-366 (374)
26 3t5t_A Putative glycosyltransf 100.0 7.7E-28 2.6E-32 234.2 22.3 288 150-464 149-476 (496)
27 1v4v_A UDP-N-acetylglucosamine 99.9 6.7E-28 2.3E-32 233.6 13.3 338 74-463 5-366 (376)
28 2f9f_A First mannosyl transfer 99.9 2.3E-27 7.8E-32 204.1 10.1 152 264-436 17-173 (177)
29 3dzc_A UDP-N-acetylglucosamine 99.9 1.1E-22 3.9E-27 197.1 17.0 344 72-458 23-394 (396)
30 3otg_A CALG1; calicheamicin, T 99.9 9.5E-22 3.2E-26 192.7 19.7 165 268-460 241-409 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.9 6.7E-21 2.3E-25 182.8 24.8 320 73-458 1-355 (365)
32 3ot5_A UDP-N-acetylglucosamine 99.9 4.7E-22 1.6E-26 193.0 13.9 342 72-463 25-393 (403)
33 3rhz_A GTF3, nucleotide sugar 99.9 1.3E-20 4.4E-25 177.3 19.0 301 75-454 11-329 (339)
34 2iyf_A OLED, oleandomycin glyc 99.8 1.1E-19 3.8E-24 179.0 20.7 168 268-463 231-403 (430)
35 4fzr_A SSFS6; structural genom 99.8 7E-21 2.4E-25 185.6 11.8 158 268-456 226-397 (398)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 1.2E-19 4.2E-24 176.4 16.3 163 268-459 217-388 (391)
37 3oti_A CALG3; calicheamicin, T 99.8 2E-18 6.8E-23 168.2 21.9 159 268-458 231-396 (398)
38 3ia7_A CALG4; glycosysltransfe 99.8 2.4E-18 8E-23 167.9 20.0 164 268-460 230-399 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.8 4.4E-17 1.5E-21 159.6 21.2 164 268-460 246-414 (415)
40 2p6p_A Glycosyl transferase; X 99.7 3.6E-15 1.2E-19 144.4 25.2 159 268-458 209-378 (384)
41 3q3e_A HMW1C-like glycosyltran 99.6 1.2E-14 4E-19 143.8 19.6 187 261-466 430-628 (631)
42 4hwg_A UDP-N-acetylglucosamine 99.6 6.3E-16 2.1E-20 148.5 9.9 336 74-458 9-374 (385)
43 2yjn_A ERYCIII, glycosyltransf 99.6 4.6E-15 1.6E-19 146.3 14.9 161 268-459 266-435 (441)
44 2iya_A OLEI, oleandomycin glyc 99.5 7.6E-13 2.6E-17 129.7 22.3 162 268-458 254-420 (424)
45 3h4t_A Glycosyltransferase GTF 99.5 4.3E-13 1.5E-17 130.5 17.2 157 268-458 220-381 (404)
46 1l5w_A Maltodextrin phosphoryl 99.5 8.9E-13 3E-17 133.1 18.7 247 208-463 419-732 (796)
47 2c4m_A Glycogen phosphorylase; 99.5 4.9E-13 1.7E-17 134.9 14.7 250 208-463 408-721 (796)
48 2gj4_A Glycogen phosphorylase, 99.4 8.4E-12 2.9E-16 126.5 21.3 201 208-409 443-703 (824)
49 4amg_A Snogd; transferase, pol 99.4 6E-12 2E-16 122.3 19.4 158 268-457 236-398 (400)
50 1iir_A Glycosyltransferase GTF 99.4 1.9E-11 6.5E-16 119.4 22.5 158 269-464 238-401 (415)
51 2o6l_A UDP-glucuronosyltransfe 99.3 2.8E-12 9.5E-17 108.7 9.8 135 268-435 20-163 (170)
52 1rrv_A Glycosyltransferase GTF 99.3 1E-10 3.4E-15 114.3 21.1 157 269-464 237-402 (416)
53 4gyw_A UDP-N-acetylglucosamine 99.3 7.2E-10 2.4E-14 114.9 27.9 187 261-467 514-711 (723)
54 3hbm_A UDP-sugar hydrolase; PS 98.6 5.7E-06 2E-10 75.1 20.1 94 270-389 158-251 (282)
55 3l7i_A Teichoic acid biosynthe 98.1 0.00015 5.2E-09 75.6 19.1 294 74-426 352-683 (729)
56 1ygp_A Yeast glycogen phosphor 98.1 0.00019 6.4E-09 73.0 18.4 147 260-407 582-760 (879)
57 3tov_A Glycosyl transferase fa 97.8 0.00059 2E-08 64.3 16.7 110 258-389 173-287 (349)
58 2c1x_A UDP-glucose flavonoid 3 97.7 8.3E-05 2.8E-09 72.9 9.3 96 339-442 325-427 (456)
59 2gt1_A Lipopolysaccharide hept 97.6 0.0028 9.6E-08 59.0 17.3 136 264-426 173-322 (326)
60 3hbf_A Flavonoid 3-O-glucosylt 97.5 0.0011 3.7E-08 64.6 13.7 97 339-441 327-428 (454)
61 2pq6_A UDP-glucuronosyl/UDP-gl 97.5 0.0013 4.3E-08 65.0 14.2 95 339-442 353-454 (482)
62 1psw_A ADP-heptose LPS heptosy 97.3 0.0012 4.1E-08 62.1 10.5 111 257-388 167-286 (348)
63 2jzc_A UDP-N-acetylglucosamine 97.2 0.00021 7.2E-09 62.0 3.8 73 340-423 115-196 (224)
64 2acv_A Triterpene UDP-glucosyl 97.1 0.0079 2.7E-07 58.9 14.9 87 339-432 332-432 (463)
65 2vch_A Hydroquinone glucosyltr 97.0 0.017 5.7E-07 56.9 16.2 80 341-425 341-428 (480)
66 1xv5_A AGT, DNA alpha-glucosyl 94.1 2.2 7.6E-05 35.4 24.8 337 74-451 1-392 (401)
67 4gi5_A Quinone reductase; prot 89.9 0.49 1.7E-05 42.4 6.0 43 71-113 19-62 (280)
68 3kht_A Response regulator; PSI 88.7 3.6 0.00012 32.0 9.9 112 307-425 4-127 (144)
69 1k68_A Phytochrome response re 88.4 3.7 0.00013 31.5 9.8 110 309-425 3-130 (140)
70 2phj_A 5'-nucleotidase SURE; S 87.2 1.6 5.5E-05 38.1 7.2 40 74-117 1-40 (251)
71 2bw0_A 10-FTHFDH, 10-formyltet 87.1 1.4 5E-05 40.4 7.3 80 70-158 18-107 (329)
72 3heb_A Response regulator rece 86.5 3.8 0.00013 32.2 8.9 110 308-424 4-133 (152)
73 3egc_A Putative ribose operon 85.8 18 0.00062 31.9 15.0 214 72-347 6-222 (291)
74 3jte_A Response regulator rece 85.7 3.8 0.00013 31.7 8.4 110 309-427 4-124 (143)
75 2zay_A Response regulator rece 85.0 4.3 0.00015 31.6 8.5 110 307-425 7-127 (147)
76 2wqk_A 5'-nucleotidase SURE; S 84.8 1.5 5E-05 38.5 5.9 40 74-117 1-40 (251)
77 1qkk_A DCTD, C4-dicarboxylate 84.7 8.3 0.00028 30.2 10.2 110 308-426 3-121 (155)
78 2a5l_A Trp repressor binding p 84.4 1.2 4.2E-05 37.4 5.1 40 72-113 3-43 (200)
79 3h5i_A Response regulator/sens 84.4 11 0.00039 28.8 10.7 109 308-425 5-123 (140)
80 3ilh_A Two component response 84.0 6.3 0.00022 30.4 9.1 114 307-427 8-140 (146)
81 3grc_A Sensor protein, kinase; 83.9 8.8 0.0003 29.3 9.8 109 308-425 6-126 (140)
82 1k66_A Phytochrome response re 83.7 6.6 0.00022 30.4 9.1 111 308-425 6-137 (149)
83 1i3c_A Response regulator RCP1 83.4 8.4 0.00029 30.0 9.6 111 307-424 7-135 (149)
84 3cg4_A Response regulator rece 83.1 7.3 0.00025 29.9 9.0 110 307-425 6-126 (142)
85 3h1g_A Chemotaxis protein CHEY 83.0 8.4 0.00029 29.0 9.2 110 308-425 5-126 (129)
86 2zki_A 199AA long hypothetical 82.5 1.4 4.8E-05 37.0 4.7 40 73-114 3-42 (199)
87 2pln_A HP1043, response regula 82.4 5.3 0.00018 30.6 7.9 107 307-426 17-133 (137)
88 3q0i_A Methionyl-tRNA formyltr 81.3 4 0.00014 37.2 7.5 81 71-158 4-93 (318)
89 2l2q_A PTS system, cellobiose- 81.1 12 0.00041 27.7 9.0 74 311-389 8-83 (109)
90 3h75_A Periplasmic sugar-bindi 81.0 33 0.0011 31.2 18.4 42 72-113 1-43 (350)
91 4g65_A TRK system potassium up 80.9 41 0.0014 32.3 17.7 128 282-425 218-366 (461)
92 3gt7_A Sensor protein; structu 80.8 12 0.00042 29.3 9.7 110 307-425 6-126 (154)
93 3eul_A Possible nitrate/nitrit 80.5 10 0.00035 29.6 9.1 113 307-426 14-135 (152)
94 2rdm_A Response regulator rece 80.3 15 0.00051 27.6 9.8 108 308-426 5-123 (132)
95 1l5x_A SurviVal protein E; str 80.1 6.1 0.00021 35.1 8.0 39 75-117 1-39 (280)
96 4e7p_A Response regulator; DNA 80.1 9.7 0.00033 29.7 8.8 112 308-426 20-140 (150)
97 3hzh_A Chemotaxis response reg 79.9 8 0.00027 30.5 8.3 67 356-425 83-156 (157)
98 3kcn_A Adenylate cyclase homol 79.4 9.9 0.00034 29.6 8.7 111 308-428 4-125 (151)
99 2vzf_A NADH-dependent FMN redu 78.9 2.9 9.8E-05 35.1 5.4 40 74-113 2-43 (197)
100 3p0r_A Azoreductase; structura 78.4 3.2 0.00011 35.3 5.6 41 73-113 3-48 (211)
101 3lua_A Response regulator rece 78.1 6.4 0.00022 30.2 7.0 111 308-427 4-128 (140)
102 2rjn_A Response regulator rece 77.9 15 0.0005 28.7 9.3 111 307-426 6-126 (154)
103 3n53_A Response regulator rece 77.5 18 0.0006 27.6 9.5 108 309-426 4-122 (140)
104 1dbw_A Transcriptional regulat 77.2 18 0.00063 26.8 9.4 109 308-425 3-120 (126)
105 2qvg_A Two component response 77.2 13 0.00044 28.5 8.6 110 308-424 7-133 (143)
106 3cnb_A DNA-binding response re 76.9 16 0.00055 27.8 9.2 112 307-426 7-130 (143)
107 2qzj_A Two-component response 76.9 7.6 0.00026 29.7 7.1 109 308-425 4-120 (136)
108 3t6k_A Response regulator rece 76.7 22 0.00076 26.9 9.8 109 309-426 5-124 (136)
109 3gl9_A Response regulator; bet 76.6 21 0.0007 26.5 10.0 107 310-425 4-121 (122)
110 3f6c_A Positive transcription 76.3 22 0.00075 26.7 10.0 109 309-426 2-120 (134)
111 1j9j_A Stationary phase surviV 76.1 6.9 0.00024 34.0 7.0 39 75-117 1-39 (247)
112 2b4a_A BH3024; flavodoxin-like 76.0 23 0.00079 26.8 9.9 110 307-426 14-131 (138)
113 4had_A Probable oxidoreductase 75.8 9.1 0.00031 35.3 8.4 94 269-389 22-117 (350)
114 3eod_A Protein HNR; response r 75.7 16 0.00055 27.3 8.7 111 307-426 6-126 (130)
115 3hdv_A Response regulator; PSI 75.5 16 0.00055 27.6 8.7 112 307-427 6-128 (136)
116 3e9m_A Oxidoreductase, GFO/IDH 75.4 21 0.00072 32.5 10.7 69 307-389 28-98 (330)
117 3tqq_A Methionyl-tRNA formyltr 75.4 5.4 0.00018 36.3 6.4 79 73-158 1-88 (314)
118 1jbe_A Chemotaxis protein CHEY 75.3 23 0.00077 26.3 9.6 110 308-425 4-124 (128)
119 1fy2_A Aspartyl dipeptidase; s 75.2 13 0.00046 31.8 8.7 96 285-391 17-122 (229)
120 2q62_A ARSH; alpha/beta, flavo 75.2 8 0.00027 33.7 7.3 42 72-113 32-74 (247)
121 3l6u_A ABC-type sugar transpor 75.0 43 0.0015 29.3 15.5 217 72-349 6-230 (293)
122 2v4n_A Multifunctional protein 74.9 5.9 0.0002 34.6 6.3 40 74-117 1-40 (254)
123 2qsj_A DNA-binding response re 74.9 15 0.0005 28.7 8.5 111 308-426 3-124 (154)
124 1d4a_A DT-diaphorase, quinone 74.9 4.9 0.00017 35.7 6.0 41 74-114 2-43 (273)
125 3hv2_A Response regulator/HD d 74.7 17 0.00059 28.2 8.9 109 309-426 15-133 (153)
126 2d1p_A TUSD, hypothetical UPF0 74.6 5.4 0.00019 31.3 5.5 41 74-114 12-54 (140)
127 1mb3_A Cell division response 74.6 19 0.00064 26.6 8.7 107 310-425 3-120 (124)
128 2hy5_B Intracellular sulfur ox 74.6 13 0.00044 28.9 7.7 42 74-115 5-47 (136)
129 2hy5_A Putative sulfurtransfer 74.2 5.8 0.0002 30.6 5.6 40 75-114 1-42 (130)
130 2j48_A Two-component sensor ki 74.2 10 0.00036 27.5 7.1 107 310-425 3-117 (119)
131 1ydw_A AX110P-like protein; st 73.9 22 0.00075 32.8 10.6 72 307-389 29-102 (362)
132 3i42_A Response regulator rece 73.8 3.8 0.00013 30.9 4.5 34 72-111 1-34 (127)
133 3hdg_A Uncharacterized protein 73.5 17 0.00057 27.6 8.3 111 307-426 6-125 (137)
134 3m6m_D Sensory/regulatory prot 73.3 21 0.00072 27.4 8.9 110 307-425 13-135 (143)
135 3o74_A Fructose transport syst 73.1 45 0.0015 28.7 16.3 41 74-114 2-42 (272)
136 3f6r_A Flavodoxin; FMN binding 73.1 4.6 0.00016 31.8 4.9 39 74-113 1-39 (148)
137 3kkl_A Probable chaperone prot 73.0 6.7 0.00023 34.2 6.3 44 72-115 1-53 (244)
138 1e2b_A Enzyme IIB-cellobiose; 72.7 18 0.00062 26.6 7.7 70 310-384 6-75 (106)
139 3rfo_A Methionyl-tRNA formyltr 72.7 8.1 0.00028 35.1 7.0 79 73-158 3-90 (317)
140 2gkg_A Response regulator homo 72.5 16 0.00055 27.0 7.9 108 309-426 6-125 (127)
141 3nhm_A Response regulator; pro 72.3 28 0.00095 26.0 9.9 108 309-426 5-122 (133)
142 3lte_A Response regulator; str 71.9 26 0.0009 26.1 9.1 110 308-426 6-125 (132)
143 3c97_A Signal transduction his 71.1 31 0.0011 26.1 10.5 109 309-426 11-130 (140)
144 3cfy_A Putative LUXO repressor 70.9 22 0.00075 27.0 8.5 107 310-425 6-121 (137)
145 3f6p_A Transcriptional regulat 70.5 29 0.00099 25.5 9.0 107 310-425 4-118 (120)
146 2gkg_A Response regulator homo 70.5 4.8 0.00016 30.1 4.4 34 72-111 3-36 (127)
147 2rk3_A Protein DJ-1; parkinson 70.5 20 0.00068 29.7 8.6 74 72-159 1-75 (197)
148 1jx7_A Hypothetical protein YC 70.4 6.9 0.00023 29.3 5.2 41 74-114 1-44 (117)
149 2qxy_A Response regulator; reg 70.3 17 0.00057 27.8 7.7 110 308-427 4-122 (142)
150 1ydg_A Trp repressor binding p 70.0 5.9 0.0002 33.4 5.2 40 73-114 5-45 (211)
151 4dad_A Putative pilus assembly 69.9 8.5 0.00029 29.8 5.9 109 308-425 20-140 (146)
152 2q1w_A Putative nucleotide sug 69.9 10 0.00035 34.5 7.2 41 67-113 14-54 (333)
153 1dcf_A ETR1 protein; beta-alph 69.5 12 0.00039 28.5 6.5 111 307-426 6-129 (136)
154 3b6i_A Flavoprotein WRBA; flav 69.5 5.9 0.0002 33.0 5.0 39 74-114 1-41 (198)
155 3qjg_A Epidermin biosynthesis 69.4 7 0.00024 32.0 5.2 39 73-115 4-43 (175)
156 3ouz_A Biotin carboxylase; str 69.4 6.6 0.00022 37.7 6.0 36 71-113 3-38 (446)
157 3i42_A Response regulator rece 69.2 24 0.00082 26.1 8.2 110 308-426 3-122 (127)
158 3n7t_A Macrophage binding prot 69.1 9.3 0.00032 33.3 6.3 42 74-115 9-59 (247)
159 3cg0_A Response regulator rece 69.0 34 0.0012 25.7 9.6 110 307-425 8-127 (140)
160 3uuw_A Putative oxidoreductase 68.9 10 0.00036 34.1 6.9 69 306-389 29-97 (308)
161 3to5_A CHEY homolog; alpha(5)b 68.8 37 0.0012 26.1 9.1 111 307-425 11-132 (134)
162 3tem_A Ribosyldihydronicotinam 68.6 7.6 0.00026 33.4 5.6 41 74-114 1-42 (228)
163 1zgz_A Torcad operon transcrip 68.5 32 0.0011 25.1 9.5 107 310-425 4-118 (122)
164 3cu5_A Two component transcrip 68.3 37 0.0013 25.8 9.6 66 357-425 50-122 (141)
165 3hzh_A Chemotaxis response reg 68.2 6.4 0.00022 31.1 4.8 34 72-111 34-67 (157)
166 2d1p_B TUSC, hypothetical UPF0 68.1 8.4 0.00029 29.1 5.2 41 74-114 1-42 (119)
167 2ywr_A Phosphoribosylglycinami 68.1 15 0.00052 31.2 7.3 74 74-158 1-88 (216)
168 3auf_A Glycinamide ribonucleot 67.9 17 0.00058 31.2 7.6 74 74-158 22-109 (229)
169 2qr3_A Two-component system re 67.5 21 0.0007 27.1 7.6 110 308-426 3-126 (140)
170 1p6q_A CHEY2; chemotaxis, sign 67.4 25 0.00087 26.1 8.1 110 308-425 6-126 (129)
171 3nbm_A PTS system, lactose-spe 67.3 12 0.0004 27.8 5.6 74 311-389 10-85 (108)
172 2r25_B Osmosensing histidine p 66.9 36 0.0012 25.6 8.9 109 309-425 3-126 (133)
173 2ixd_A LMBE-related protein; h 66.6 13 0.00043 32.3 6.6 40 72-113 1-40 (242)
174 2hpv_A FMN-dependent NADH-azor 66.6 8.5 0.00029 32.3 5.5 40 74-113 1-45 (208)
175 3ty2_A 5'-nucleotidase SURE; s 66.5 9.1 0.00031 33.5 5.5 41 73-117 10-50 (261)
176 3crn_A Response regulator rece 66.3 38 0.0013 25.3 9.6 108 309-425 4-120 (132)
177 3f2v_A General stress protein 66.3 3.7 0.00013 34.3 3.0 38 74-112 1-38 (192)
178 3lcm_A SMU.1420, putative oxid 66.3 13 0.00044 31.0 6.5 38 75-113 1-39 (196)
179 1ys7_A Transcriptional regulat 66.1 56 0.0019 27.4 10.9 109 308-425 7-124 (233)
180 1s8n_A Putative antiterminator 66.1 54 0.0018 26.9 11.2 110 309-427 14-132 (205)
181 1rw7_A YDR533CP; alpha-beta sa 66.0 11 0.00036 32.8 6.1 44 72-115 1-53 (243)
182 1sqs_A Conserved hypothetical 65.8 9.1 0.00031 33.1 5.6 40 74-113 1-42 (242)
183 2gwr_A DNA-binding response re 65.8 51 0.0017 27.9 10.6 108 309-425 6-121 (238)
184 3r6w_A FMN-dependent NADH-azor 65.8 6.9 0.00024 33.1 4.8 40 74-113 1-44 (212)
185 3av3_A Phosphoribosylglycinami 65.3 18 0.00061 30.6 7.1 74 74-158 3-90 (212)
186 3g1w_A Sugar ABC transporter; 65.3 72 0.0025 28.0 18.5 225 73-356 3-232 (305)
187 4ds3_A Phosphoribosylglycinami 65.2 17 0.00059 30.6 6.9 76 72-158 5-94 (209)
188 3gpi_A NAD-dependent epimerase 65.0 8.9 0.0003 34.0 5.6 36 72-114 1-36 (286)
189 3c3m_A Response regulator rece 64.8 28 0.00097 26.3 7.9 109 309-426 4-123 (138)
190 3mm4_A Histidine kinase homolo 64.7 28 0.00096 28.9 8.4 68 356-428 119-198 (206)
191 4b4o_A Epimerase family protei 64.6 9.4 0.00032 34.1 5.7 33 75-113 1-33 (298)
192 4f3y_A DHPR, dihydrodipicolina 64.6 12 0.00041 33.1 6.2 61 348-410 65-130 (272)
193 3cea_A MYO-inositol 2-dehydrog 64.6 43 0.0015 30.5 10.4 69 307-389 32-102 (346)
194 1srr_A SPO0F, sporulation resp 64.2 38 0.0013 24.8 8.5 108 309-425 4-120 (124)
195 1rcu_A Conserved hypothetical 63.8 4.6 0.00016 33.7 3.1 67 351-423 113-192 (195)
196 2pn1_A Carbamoylphosphate synt 63.7 24 0.00081 32.0 8.4 34 72-113 2-37 (331)
197 2jba_A Phosphate regulon trans 63.6 25 0.00085 26.0 7.3 107 310-425 4-121 (127)
198 2xj4_A MIPZ; replication, cell 63.5 9.1 0.00031 34.1 5.3 41 72-114 1-43 (286)
199 3f6p_A Transcriptional regulat 63.4 22 0.00076 26.1 6.9 31 74-110 2-32 (120)
200 4hkt_A Inositol 2-dehydrogenas 63.3 33 0.0011 31.2 9.2 67 307-389 26-94 (331)
201 3slg_A PBGP3 protein; structur 63.3 21 0.00073 32.9 8.1 39 70-114 20-59 (372)
202 1mvo_A PHOP response regulator 63.0 45 0.0015 24.9 10.1 109 309-426 4-121 (136)
203 1tvm_A PTS system, galactitol- 62.7 13 0.00046 27.7 5.3 55 310-365 24-78 (113)
204 2fzv_A Putative arsenical resi 62.5 11 0.00039 33.4 5.5 43 72-114 56-99 (279)
205 1t5b_A Acyl carrier protein ph 62.5 8.5 0.00029 32.0 4.7 40 74-113 1-44 (201)
206 3mcu_A Dipicolinate synthase, 62.4 10 0.00036 31.9 5.0 39 73-115 4-44 (207)
207 1e2b_A Enzyme IIB-cellobiose; 62.2 11 0.00037 27.8 4.6 40 72-113 1-40 (106)
208 3i6i_A Putative leucoanthocyan 62.2 23 0.00078 32.3 8.0 80 72-159 8-92 (346)
209 3snk_A Response regulator CHEY 62.0 18 0.00062 27.3 6.3 110 307-425 13-132 (135)
210 4fb5_A Probable oxidoreductase 62.0 17 0.00059 33.8 7.2 100 269-389 24-125 (393)
211 3u3x_A Oxidoreductase; structu 61.8 42 0.0014 30.9 9.8 92 270-389 26-119 (361)
212 3mc3_A DSRE/DSRF-like family p 61.6 15 0.0005 28.5 5.5 42 73-115 14-57 (134)
213 3q98_A Transcarbamylase; rossm 61.5 35 0.0012 32.0 8.9 85 73-159 190-275 (399)
214 2z1m_A GDP-D-mannose dehydrata 61.3 21 0.00073 32.3 7.6 37 72-114 1-37 (345)
215 3fvw_A Putative NAD(P)H-depend 61.1 12 0.0004 31.1 5.2 40 73-113 1-41 (192)
216 3hly_A Flavodoxin-like domain; 60.8 15 0.00051 29.4 5.7 38 75-113 1-38 (161)
217 3u7r_A NADPH-dependent FMN red 60.5 11 0.00037 31.4 4.8 40 73-112 1-40 (190)
218 2ark_A Flavodoxin; FMN, struct 60.5 9.7 0.00033 31.4 4.6 38 74-113 4-43 (188)
219 2qv0_A Protein MRKE; structura 60.4 52 0.0018 24.8 10.0 111 307-425 8-126 (143)
220 3e8x_A Putative NAD-dependent 60.4 11 0.00038 32.2 5.2 37 71-113 18-54 (236)
221 1fmt_A Methionyl-tRNA FMet for 60.3 24 0.00081 32.0 7.4 79 73-158 2-89 (314)
222 3zqu_A Probable aromatic acid 60.2 15 0.00052 31.0 5.7 37 73-113 3-40 (209)
223 3euw_A MYO-inositol dehydrogen 60.2 59 0.002 29.6 10.4 68 307-389 27-96 (344)
224 1yio_A Response regulatory pro 60.1 70 0.0024 26.2 12.0 109 309-426 5-122 (208)
225 3db2_A Putative NADPH-dependen 60.1 39 0.0013 31.0 9.2 69 306-389 27-97 (354)
226 3r0j_A Possible two component 60.0 56 0.0019 27.9 9.8 66 357-425 68-140 (250)
227 3ruf_A WBGU; rossmann fold, UD 60.0 17 0.00058 33.3 6.7 38 72-115 23-60 (351)
228 2pq6_A UDP-glucuronosyl/UDP-gl 59.9 7.7 0.00026 37.7 4.4 37 74-112 8-44 (482)
229 3rc1_A Sugar 3-ketoreductase; 59.9 22 0.00077 32.7 7.4 93 269-389 26-120 (350)
230 2pl1_A Transcriptional regulat 59.8 47 0.0016 24.1 10.2 107 310-425 2-117 (121)
231 3v5n_A Oxidoreductase; structu 59.7 43 0.0015 31.7 9.5 71 307-389 63-141 (417)
232 1xhf_A DYE resistance, aerobic 59.6 48 0.0016 24.1 9.6 108 309-425 4-119 (123)
233 3miz_A Putative transcriptiona 59.1 93 0.0032 27.3 16.3 221 69-348 8-234 (301)
234 3rqi_A Response regulator prot 59.1 21 0.00073 28.9 6.5 110 308-426 7-125 (184)
235 4ep1_A Otcase, ornithine carba 58.8 30 0.001 31.6 7.7 39 73-117 178-216 (340)
236 3lqk_A Dipicolinate synthase s 58.8 14 0.0005 30.9 5.3 40 73-116 6-47 (201)
237 3evn_A Oxidoreductase, GFO/IDH 58.6 16 0.00054 33.3 6.1 69 307-389 28-98 (329)
238 1p9l_A Dihydrodipicolinate red 58.4 43 0.0015 29.0 8.5 78 310-395 2-82 (245)
239 1zh8_A Oxidoreductase; TM0312, 58.2 28 0.00097 31.8 7.8 94 268-389 16-113 (340)
240 3grc_A Sensor protein, kinase; 58.1 15 0.00051 28.0 5.1 34 72-111 4-37 (140)
241 4a8p_A Putrescine carbamoyltra 58.1 33 0.0011 31.5 7.9 38 74-117 153-190 (355)
242 2ayx_A Sensor kinase protein R 58.0 73 0.0025 27.4 10.2 66 357-425 174-246 (254)
243 3eod_A Protein HNR; response r 58.0 15 0.00051 27.5 5.1 33 72-110 5-37 (130)
244 2yfk_A Aspartate/ornithine car 57.9 41 0.0014 31.7 8.7 83 74-158 188-271 (418)
245 1p2f_A Response regulator; DRR 57.9 25 0.00085 29.4 6.9 106 310-425 4-116 (220)
246 3rpe_A MDAB, modulator of drug 57.8 12 0.00041 31.9 4.7 41 73-113 24-69 (218)
247 3u7i_A FMN-dependent NADH-azor 57.7 16 0.00056 31.1 5.7 42 73-114 3-51 (223)
248 1g63_A Epidermin modifying enz 57.7 10 0.00035 31.2 4.1 37 74-114 2-39 (181)
249 3moi_A Probable dehydrogenase; 57.6 38 0.0013 31.6 8.7 68 307-389 26-95 (387)
250 4a8t_A Putrescine carbamoyltra 57.6 34 0.0012 31.2 7.9 37 74-116 175-211 (339)
251 2qv7_A Diacylglycerol kinase D 57.4 20 0.00068 32.8 6.6 46 69-114 19-65 (337)
252 2qxy_A Response regulator; reg 57.2 14 0.00048 28.2 4.8 33 73-111 3-35 (142)
253 3o1i_D Periplasmic protein TOR 57.2 99 0.0034 27.0 12.0 42 73-114 4-45 (304)
254 2lpm_A Two-component response 57.2 3.5 0.00012 31.6 1.1 29 74-108 8-36 (123)
255 3b2n_A Uncharacterized protein 56.9 58 0.002 24.2 9.1 111 309-426 4-123 (133)
256 2ho3_A Oxidoreductase, GFO/IDH 56.9 39 0.0013 30.6 8.5 69 307-389 24-93 (325)
257 3rof_A Low molecular weight pr 56.7 17 0.00058 29.1 5.2 86 71-159 3-92 (158)
258 1h6d_A Precursor form of gluco 56.5 28 0.00094 33.2 7.6 98 268-389 81-181 (433)
259 2vvp_A Ribose-5-phosphate isom 56.2 10 0.00035 30.4 3.7 38 72-113 1-38 (162)
260 2a9o_A Response regulator; ess 56.2 54 0.0018 23.6 10.3 107 310-425 3-117 (120)
261 3gd5_A Otcase, ornithine carba 56.1 36 0.0012 30.9 7.7 39 73-117 156-194 (323)
262 3dty_A Oxidoreductase, GFO/IDH 56.1 43 0.0015 31.4 8.8 71 307-389 38-116 (398)
263 2ixa_A Alpha-N-acetylgalactosa 56.0 43 0.0015 32.0 8.9 75 307-389 43-122 (444)
264 2hna_A Protein MIOC, flavodoxi 55.9 13 0.00046 29.0 4.5 36 75-111 2-37 (147)
265 3t6k_A Response regulator rece 55.6 17 0.00058 27.7 5.0 33 72-110 2-34 (136)
266 3to5_A CHEY homolog; alpha(5)b 55.2 29 0.00098 26.7 6.2 33 73-111 11-43 (134)
267 4h3v_A Oxidoreductase domain p 55.2 25 0.00087 32.6 7.1 68 308-389 37-106 (390)
268 3crn_A Response regulator rece 55.0 17 0.00059 27.4 5.0 33 72-110 1-33 (132)
269 1qv9_A F420-dependent methylen 54.9 47 0.0016 28.3 7.5 86 305-410 29-122 (283)
270 3a10_A Response regulator; pho 54.9 56 0.0019 23.4 10.6 106 310-424 3-115 (116)
271 1rpn_A GDP-mannose 4,6-dehydra 54.9 33 0.0011 30.9 7.7 35 74-114 14-48 (335)
272 3ohs_X Trans-1,2-dihydrobenzen 54.8 52 0.0018 29.8 9.0 68 308-389 28-97 (334)
273 1srr_A SPO0F, sporulation resp 54.7 16 0.00054 27.1 4.6 33 72-110 1-33 (124)
274 3sc6_A DTDP-4-dehydrorhamnose 54.7 13 0.00045 32.8 4.8 33 74-112 5-37 (287)
275 3cz5_A Two-component response 54.6 70 0.0024 24.5 10.8 110 307-425 4-124 (153)
276 3g85_A Transcriptional regulat 54.6 1.1E+02 0.0036 26.6 14.5 215 70-347 7-224 (289)
277 3kto_A Response regulator rece 54.6 21 0.0007 27.1 5.4 110 308-426 6-126 (136)
278 3f6c_A Positive transcription 54.6 33 0.0011 25.6 6.6 33 74-112 1-33 (134)
279 3enk_A UDP-glucose 4-epimerase 54.6 30 0.001 31.3 7.4 35 74-114 5-39 (341)
280 1hdo_A Biliverdin IX beta redu 54.4 18 0.0006 29.9 5.3 36 72-113 1-36 (206)
281 3oqb_A Oxidoreductase; structu 54.4 31 0.0011 32.1 7.5 57 325-389 56-114 (383)
282 3dfz_A SIRC, precorrin-2 dehyd 54.3 40 0.0014 28.7 7.4 34 73-113 30-63 (223)
283 2iz6_A Molybdenum cofactor car 54.2 5.4 0.00019 32.7 1.9 69 351-425 102-173 (176)
284 1f4p_A Flavodoxin; electron tr 53.9 15 0.00053 28.6 4.6 36 75-111 1-36 (147)
285 3gl9_A Response regulator; bet 53.8 19 0.00064 26.7 4.9 31 74-110 2-32 (122)
286 3e3m_A Transcriptional regulat 53.8 1.3E+02 0.0044 27.2 16.9 46 69-114 65-110 (355)
287 3ehd_A Uncharacterized conserv 53.7 24 0.00081 28.4 5.6 67 353-424 66-161 (162)
288 4dim_A Phosphoribosylglycinami 53.6 14 0.00048 34.7 5.0 75 71-157 4-78 (403)
289 3lte_A Response regulator; str 53.5 50 0.0017 24.4 7.5 33 73-111 5-37 (132)
290 2rdm_A Response regulator rece 53.4 20 0.00068 26.8 5.1 33 72-110 3-35 (132)
291 4huj_A Uncharacterized protein 53.3 15 0.0005 31.3 4.6 37 70-113 19-55 (220)
292 1uan_A Hypothetical protein TT 53.3 25 0.00084 30.1 6.0 38 74-113 1-38 (227)
293 3m2t_A Probable dehydrogenase; 53.1 18 0.00063 33.4 5.6 69 307-389 29-99 (359)
294 3dhn_A NAD-dependent epimerase 53.0 17 0.00057 30.7 5.0 34 74-113 4-37 (227)
295 3rqi_A Response regulator prot 52.9 18 0.0006 29.5 5.0 34 72-111 5-38 (184)
296 4em8_A Ribose 5-phosphate isom 52.8 20 0.00068 28.2 4.8 38 72-113 5-42 (148)
297 2pzm_A Putative nucleotide sug 52.7 32 0.0011 31.0 7.2 36 72-113 18-53 (330)
298 2c20_A UDP-glucose 4-epimerase 52.7 31 0.0011 31.0 7.1 34 74-113 1-34 (330)
299 1t2a_A GDP-mannose 4,6 dehydra 52.6 35 0.0012 31.4 7.6 34 75-114 25-58 (375)
300 1rtt_A Conserved hypothetical 52.3 9.2 0.00031 31.7 3.1 40 73-113 5-45 (193)
301 3hs3_A Ribose operon repressor 52.2 1.2E+02 0.0039 26.3 12.3 45 69-113 5-50 (277)
302 1kjn_A MTH0777; hypotethical p 52.1 37 0.0013 26.6 6.1 40 74-113 6-45 (157)
303 3l4e_A Uncharacterized peptida 52.0 23 0.00078 29.8 5.5 78 309-391 28-122 (206)
304 1zq6_A Otcase, ornithine carba 51.5 44 0.0015 30.8 7.6 38 74-113 190-229 (359)
305 2i6u_A Otcase, ornithine carba 51.1 55 0.0019 29.4 8.1 40 73-117 147-186 (307)
306 3q9s_A DNA-binding response re 51.1 36 0.0012 29.3 7.0 35 71-111 34-68 (249)
307 1rkx_A CDP-glucose-4,6-dehydra 50.9 36 0.0012 31.1 7.3 37 72-114 7-43 (357)
308 1n7h_A GDP-D-mannose-4,6-dehyd 50.8 36 0.0012 31.4 7.4 34 75-114 29-62 (381)
309 1pvv_A Otcase, ornithine carba 50.7 57 0.0019 29.4 8.2 39 73-117 154-192 (315)
310 1kgs_A DRRD, DNA binding respo 50.7 1.1E+02 0.0036 25.4 10.3 107 310-425 4-119 (225)
311 3kcq_A Phosphoribosylglycinami 50.7 36 0.0012 28.8 6.5 74 74-158 8-90 (215)
312 2dzd_A Pyruvate carboxylase; b 50.6 21 0.00073 34.2 5.8 35 72-113 4-38 (461)
313 3h5i_A Response regulator/sens 50.6 21 0.00072 27.2 4.9 33 73-111 4-36 (140)
314 4ffl_A PYLC; amino acid, biosy 50.4 50 0.0017 30.3 8.2 34 74-114 1-34 (363)
315 1tmy_A CHEY protein, TMY; chem 50.2 69 0.0023 23.1 8.9 107 310-424 4-119 (120)
316 4hs4_A Chromate reductase; tri 50.1 13 0.00044 31.1 3.7 39 72-111 4-44 (199)
317 3cg4_A Response regulator rece 50.1 20 0.0007 27.2 4.7 33 73-111 6-38 (142)
318 2rjn_A Response regulator rece 50.0 23 0.00078 27.5 5.1 34 72-111 5-38 (154)
319 3hv2_A Response regulator/HD d 49.9 25 0.00087 27.2 5.3 33 73-111 13-45 (153)
320 1jzt_A Hypothetical 27.5 kDa p 49.8 16 0.00053 31.8 4.2 36 75-113 59-94 (246)
321 3c3m_A Response regulator rece 49.7 24 0.00081 26.8 5.0 33 72-110 1-33 (138)
322 3svl_A Protein YIEF; E. coli C 49.5 7.5 0.00026 32.4 2.1 41 73-113 3-44 (193)
323 3gv0_A Transcriptional regulat 49.4 1.3E+02 0.0045 26.1 14.6 42 72-113 6-49 (288)
324 1vlv_A Otcase, ornithine carba 49.2 46 0.0016 30.2 7.3 39 73-116 166-204 (325)
325 2prs_A High-affinity zinc upta 49.2 34 0.0012 30.4 6.5 91 350-443 42-157 (284)
326 2hqr_A Putative transcriptiona 49.1 35 0.0012 28.5 6.5 103 311-426 3-115 (223)
327 3tqr_A Phosphoribosylglycinami 49.0 57 0.0019 27.6 7.5 74 74-158 5-91 (215)
328 2vch_A Hydroquinone glucosyltr 49.0 15 0.00051 35.6 4.4 39 74-114 6-45 (480)
329 3huu_A Transcription regulator 48.9 1.4E+02 0.0047 26.2 13.8 215 69-349 17-240 (305)
330 3tpf_A Otcase, ornithine carba 48.9 55 0.0019 29.4 7.7 37 74-116 146-182 (307)
331 1id1_A Putative potassium chan 48.8 21 0.00071 28.1 4.6 35 72-113 1-35 (153)
332 1t0i_A YLR011WP; FMN binding p 48.7 28 0.00097 28.5 5.6 37 75-111 1-44 (191)
333 3mz0_A Inositol 2-dehydrogenas 48.7 63 0.0021 29.4 8.5 70 307-389 26-97 (344)
334 1xea_A Oxidoreductase, GFO/IDH 48.7 49 0.0017 29.8 7.7 68 307-389 26-94 (323)
335 4e21_A 6-phosphogluconate dehy 48.6 47 0.0016 30.7 7.5 72 72-161 20-92 (358)
336 3kjh_A CO dehydrogenase/acetyl 48.6 18 0.00061 31.1 4.5 36 75-114 1-38 (254)
337 2ejb_A Probable aromatic acid 48.5 31 0.0011 28.5 5.7 35 75-113 2-37 (189)
338 1jkx_A GART;, phosphoribosylgl 48.3 75 0.0026 26.7 8.2 73 75-158 1-87 (212)
339 3ius_A Uncharacterized conserv 47.9 21 0.00072 31.4 5.0 34 73-113 4-37 (286)
340 2e6c_A 5'-nucleotidase SURE; S 47.9 28 0.00095 30.1 5.4 38 75-116 1-38 (244)
341 3k4h_A Putative transcriptiona 47.8 1.4E+02 0.0047 25.9 18.5 217 72-349 6-230 (292)
342 1tlt_A Putative oxidoreductase 47.8 37 0.0013 30.6 6.7 68 307-389 29-96 (319)
343 2hun_A 336AA long hypothetical 47.7 46 0.0016 29.9 7.5 36 72-113 1-38 (336)
344 3q9l_A Septum site-determining 47.6 26 0.00089 30.3 5.5 40 75-114 2-41 (260)
345 3ijp_A DHPR, dihydrodipicolina 47.6 29 0.00098 30.9 5.6 61 348-410 80-145 (288)
346 3gt7_A Sensor protein; structu 47.2 25 0.00085 27.4 4.9 32 74-111 7-38 (154)
347 2fb6_A Conserved hypothetical 47.2 14 0.00047 27.9 3.0 41 74-114 7-49 (117)
348 2gwr_A DNA-binding response re 47.1 51 0.0018 27.9 7.3 32 74-111 5-36 (238)
349 4dzz_A Plasmid partitioning pr 47.1 27 0.00092 28.8 5.3 39 75-113 1-39 (206)
350 1s8n_A Putative antiterminator 47.0 36 0.0012 28.0 6.1 33 73-111 12-44 (205)
351 3dfz_A SIRC, precorrin-2 dehyd 46.8 1.3E+02 0.0045 25.4 12.7 126 308-447 54-189 (223)
352 1dz3_A Stage 0 sporulation pro 46.8 74 0.0025 23.4 7.5 108 309-425 3-122 (130)
353 3en0_A Cyanophycinase; serine 46.8 98 0.0034 27.5 9.0 111 271-391 28-154 (291)
354 3q9s_A DNA-binding response re 46.8 68 0.0023 27.5 8.0 108 309-425 38-153 (249)
355 3l49_A ABC sugar (ribose) tran 46.6 1.4E+02 0.0049 25.7 12.3 41 73-113 4-44 (291)
356 3qxc_A Dethiobiotin synthetase 46.5 30 0.001 29.9 5.5 40 72-111 18-57 (242)
357 3jvi_A Protein tyrosine phosph 46.4 29 0.00098 27.8 5.0 83 72-158 2-91 (161)
358 1g3q_A MIND ATPase, cell divis 46.3 30 0.001 29.4 5.6 40 75-114 2-41 (237)
359 3kht_A Response regulator; PSI 46.2 43 0.0015 25.4 6.1 34 72-111 3-36 (144)
360 3fwz_A Inner membrane protein 46.0 41 0.0014 25.8 5.9 71 74-160 7-81 (140)
361 3ec7_A Putative dehydrogenase; 46.0 65 0.0022 29.5 8.2 70 307-389 47-118 (357)
362 1iow_A DD-ligase, DDLB, D-ALA\ 45.8 23 0.0008 31.5 5.0 40 73-113 1-43 (306)
363 3fni_A Putative diflavin flavo 45.8 38 0.0013 26.9 5.7 39 74-113 4-42 (159)
364 3cg0_A Response regulator rece 45.5 27 0.00091 26.4 4.7 33 73-111 8-40 (140)
365 1p3y_1 MRSD protein; flavoprot 45.4 23 0.00077 29.5 4.3 37 73-113 7-44 (194)
366 3nbm_A PTS system, lactose-spe 45.4 28 0.00094 25.8 4.4 35 73-111 5-41 (108)
367 4e3z_A Putative oxidoreductase 45.3 19 0.00067 31.5 4.3 37 72-113 23-59 (272)
368 8abp_A L-arabinose-binding pro 45.2 1.5E+02 0.0053 25.7 14.5 39 74-112 2-40 (306)
369 4e7p_A Response regulator; DNA 44.9 24 0.00081 27.3 4.4 33 72-110 18-52 (150)
370 3jte_A Response regulator rece 44.9 24 0.00083 26.8 4.4 34 72-111 1-34 (143)
371 2r85_A PURP protein PF1517; AT 44.9 16 0.00056 33.1 3.8 32 74-113 2-33 (334)
372 3osu_A 3-oxoacyl-[acyl-carrier 44.8 20 0.0007 30.8 4.3 35 74-113 3-37 (246)
373 3oid_A Enoyl-[acyl-carrier-pro 44.7 20 0.0007 31.2 4.3 36 73-113 2-37 (258)
374 2dwc_A PH0318, 433AA long hypo 44.7 33 0.0011 32.5 6.1 73 74-159 19-91 (433)
375 3m6m_D Sensory/regulatory prot 44.6 26 0.00088 26.9 4.5 33 72-110 12-44 (143)
376 3da8_A Probable 5'-phosphoribo 44.5 50 0.0017 27.9 6.4 74 73-158 11-97 (215)
377 1duv_G Octase-1, ornithine tra 44.4 60 0.0021 29.5 7.3 78 74-158 155-232 (333)
378 1jg7_A BGT, DNA beta-glucosylt 44.4 1.4E+02 0.0048 25.0 18.3 64 372-441 267-331 (351)
379 3lua_A Response regulator rece 44.3 24 0.00083 26.7 4.3 33 73-111 3-36 (140)
380 3ksm_A ABC-type sugar transpor 44.1 1.5E+02 0.0051 25.3 16.6 54 284-349 170-223 (276)
381 3kzn_A Aotcase, N-acetylornith 44.1 82 0.0028 29.0 8.4 41 73-113 189-229 (359)
382 1kjq_A GART 2, phosphoribosylg 43.9 46 0.0016 30.9 6.9 72 74-158 11-82 (391)
383 1dc7_A NTRC, nitrogen regulati 43.9 31 0.001 25.2 4.7 107 310-425 5-120 (124)
384 2i87_A D-alanine-D-alanine lig 43.8 11 0.00038 34.9 2.5 42 72-113 1-44 (364)
385 2qr3_A Two-component system re 43.4 25 0.00086 26.5 4.3 34 72-111 1-34 (140)
386 3m2p_A UDP-N-acetylglucosamine 43.3 28 0.00097 31.0 5.2 35 73-113 1-35 (311)
387 4gqa_A NAD binding oxidoreduct 43.2 43 0.0015 31.4 6.6 102 268-389 24-127 (412)
388 3aek_B Light-independent proto 43.1 1.4E+02 0.0047 29.2 10.3 76 308-388 153-234 (525)
389 3u9l_A 3-oxoacyl-[acyl-carrier 42.9 61 0.0021 29.3 7.4 34 75-113 5-38 (324)
390 2b69_A UDP-glucuronate decarbo 42.7 29 0.00098 31.6 5.2 38 70-113 23-60 (343)
391 3cs3_A Sugar-binding transcrip 42.6 1.6E+02 0.0056 25.2 18.3 42 72-113 6-47 (277)
392 1u9c_A APC35852; structural ge 42.5 50 0.0017 27.8 6.4 42 74-115 5-53 (224)
393 2p2s_A Putative oxidoreductase 42.1 97 0.0033 28.0 8.7 77 72-162 2-78 (336)
394 1kgs_A DRRD, DNA binding respo 42.0 31 0.0011 28.8 5.0 32 73-110 1-32 (225)
395 1orr_A CDP-tyvelose-2-epimeras 42.0 58 0.002 29.4 7.2 32 75-112 2-33 (347)
396 3q2i_A Dehydrogenase; rossmann 41.9 96 0.0033 28.3 8.7 68 307-389 37-106 (354)
397 3u7q_A Nitrogenase molybdenum- 41.9 2.3E+02 0.0079 27.3 11.6 145 230-389 145-298 (492)
398 1dxh_A Ornithine carbamoyltran 41.9 63 0.0022 29.4 7.1 38 74-116 155-192 (335)
399 1hyq_A MIND, cell division inh 41.9 34 0.0012 29.6 5.3 40 75-114 2-41 (263)
400 2oqr_A Sensory transduction pr 41.8 91 0.0031 26.0 8.0 109 309-426 5-121 (230)
401 1qo0_D AMIR; binding protein, 41.5 1.4E+02 0.0047 24.0 13.2 108 307-428 11-127 (196)
402 2nzw_A Alpha1,3-fucosyltransfe 41.4 38 0.0013 31.3 5.6 81 348-434 223-308 (371)
403 1zh2_A KDP operon transcriptio 41.4 95 0.0033 22.2 8.0 107 310-425 3-117 (121)
404 3n8i_A Low molecular weight ph 41.3 34 0.0011 27.3 4.7 84 72-159 3-93 (157)
405 1tvm_A PTS system, galactitol- 41.0 36 0.0012 25.3 4.5 38 73-111 20-57 (113)
406 1e4e_A Vancomycin/teicoplanin 40.9 14 0.00048 33.9 2.7 39 72-113 1-44 (343)
407 3k9c_A Transcriptional regulat 40.7 1.8E+02 0.0061 25.2 14.2 212 69-347 7-221 (289)
408 3l3b_A ES1 family protein; ssg 40.7 44 0.0015 28.8 5.7 43 73-115 22-66 (242)
409 3rft_A Uronate dehydrogenase; 40.6 47 0.0016 28.8 6.1 24 91-114 14-37 (267)
410 4dad_A Putative pilus assembly 40.5 30 0.001 26.4 4.3 34 73-112 19-53 (146)
411 3sxp_A ADP-L-glycero-D-mannohe 40.5 71 0.0024 29.1 7.6 36 73-114 9-46 (362)
412 4b4t_W RPN10, 26S proteasome r 40.5 1.3E+02 0.0046 26.2 8.7 54 270-335 108-161 (268)
413 1mio_B Nitrogenase molybdenum 40.4 2.1E+02 0.0073 27.2 11.1 145 229-389 96-265 (458)
414 3ec7_A Putative dehydrogenase; 40.4 78 0.0027 29.0 7.8 82 67-162 16-99 (357)
415 3m1a_A Putative dehydrogenase; 40.4 43 0.0015 29.3 5.8 34 75-113 5-38 (281)
416 1bg6_A N-(1-D-carboxylethyl)-L 40.3 30 0.001 31.6 5.0 34 72-112 2-35 (359)
417 3brs_A Periplasmic binding pro 40.1 1.8E+02 0.0061 25.0 16.1 37 306-347 188-224 (289)
418 2iks_A DNA-binding transcripti 40.1 1.8E+02 0.0063 25.1 14.4 45 69-113 15-59 (293)
419 2qsj_A DNA-binding response re 40.0 34 0.0012 26.4 4.6 32 72-109 1-33 (154)
420 2gk4_A Conserved hypothetical 39.9 1.3E+02 0.0045 25.6 8.4 24 91-114 30-53 (232)
421 2bln_A Protein YFBG; transfera 39.8 93 0.0032 27.9 7.9 77 75-158 1-83 (305)
422 1db3_A GDP-mannose 4,6-dehydra 39.8 57 0.0019 29.8 6.8 33 75-113 2-34 (372)
423 2dvz_A BUGE, putative exported 39.7 2.1E+02 0.0071 25.6 11.4 143 273-438 118-281 (314)
424 1a04_A Nitrate/nitrite respons 39.6 1.1E+02 0.0038 25.0 8.2 110 308-425 5-124 (215)
425 3fwy_A Light-independent proto 39.2 34 0.0012 30.9 5.0 36 75-113 48-85 (314)
426 2w70_A Biotin carboxylase; lig 39.2 36 0.0012 32.5 5.4 33 73-112 1-33 (449)
427 3kke_A LACI family transcripti 39.1 2E+02 0.0067 25.1 17.4 217 69-349 10-235 (303)
428 3jy6_A Transcriptional regulat 39.0 1.8E+02 0.0063 24.8 14.3 41 74-114 7-47 (276)
429 3rc1_A Sugar 3-ketoreductase; 38.9 40 0.0014 30.9 5.5 78 71-163 24-102 (350)
430 3ezy_A Dehydrogenase; structur 38.9 1E+02 0.0035 27.9 8.3 69 307-389 25-95 (344)
431 1u0t_A Inorganic polyphosphate 38.8 33 0.0011 30.8 4.8 38 74-112 4-41 (307)
432 2h3h_A Sugar ABC transporter, 38.7 2E+02 0.0069 25.2 18.6 78 286-378 167-248 (313)
433 3r0j_A Possible two component 38.7 36 0.0012 29.2 4.9 33 72-110 21-53 (250)
434 3llv_A Exopolyphosphatase-rela 38.6 69 0.0023 24.4 6.1 33 74-113 6-38 (141)
435 1f06_A MESO-diaminopimelate D- 38.6 56 0.0019 29.5 6.3 42 349-392 51-92 (320)
436 2yy7_A L-threonine dehydrogena 38.5 41 0.0014 29.9 5.4 35 74-114 2-38 (312)
437 4h31_A Otcase, ornithine carba 38.4 70 0.0024 29.5 6.9 37 74-115 181-217 (358)
438 3cz5_A Two-component response 38.3 36 0.0012 26.2 4.5 33 73-111 4-37 (153)
439 2amj_A Modulator of drug activ 38.3 53 0.0018 27.3 5.7 39 75-113 13-56 (204)
440 1mio_A Nitrogenase molybdenum 38.2 2.9E+02 0.01 26.9 12.2 143 229-389 134-284 (533)
441 1ykg_A SIR-FP, sulfite reducta 38.1 19 0.00064 29.0 2.7 37 74-111 9-45 (167)
442 2qpq_A Protein BUG27; alpha/be 38.0 2.1E+02 0.0071 25.4 10.0 143 273-438 105-268 (301)
443 1bvy_F Protein (cytochrome P45 38.0 26 0.0009 29.0 3.7 38 74-112 21-58 (191)
444 1qzu_A Hypothetical protein MD 37.9 35 0.0012 28.6 4.4 38 73-114 18-57 (206)
445 1meo_A Phosophoribosylglycinam 37.9 84 0.0029 26.3 6.8 73 75-158 1-87 (209)
446 2acv_A Triterpene UDP-glucosyl 37.8 36 0.0012 32.7 5.2 39 74-114 9-49 (463)
447 2w37_A Ornithine carbamoyltran 37.5 74 0.0025 29.2 6.8 39 73-116 175-213 (359)
448 2ph1_A Nucleotide-binding prot 37.4 43 0.0015 29.1 5.2 38 74-113 17-56 (262)
449 2z06_A Putative uncharacterize 37.4 1.8E+02 0.0062 25.1 9.0 99 272-393 2-105 (252)
450 2ki0_A DS119; beta-alpha-beta, 37.4 5.2 0.00018 21.4 -0.5 32 308-345 4-35 (36)
451 1oth_A Protein (ornithine tran 37.3 77 0.0026 28.7 6.8 38 73-116 154-191 (321)
452 1n57_A Chaperone HSP31, protei 37.0 1.1E+02 0.0037 27.2 7.8 43 74-116 48-101 (291)
453 3r6d_A NAD-dependent epimerase 36.9 43 0.0015 28.0 5.0 23 91-113 16-39 (221)
454 1ehi_A LMDDL2, D-alanine:D-lac 36.8 27 0.00091 32.5 3.9 39 72-113 1-45 (377)
455 2m1z_A LMO0427 protein; homolo 36.7 65 0.0022 23.7 5.1 38 74-113 2-42 (106)
456 1xvl_A Mn transporter, MNTC pr 36.5 77 0.0026 28.7 6.8 87 352-443 90-185 (321)
457 2p2s_A Putative oxidoreductase 36.4 1E+02 0.0035 27.8 7.8 69 307-389 27-97 (336)
458 3fgn_A Dethiobiotin synthetase 36.4 53 0.0018 28.5 5.5 39 73-111 24-62 (251)
459 3ew7_A LMO0794 protein; Q8Y8U8 36.1 45 0.0016 27.6 5.1 33 75-113 1-33 (221)
460 2ew2_A 2-dehydropantoate 2-red 36.1 39 0.0013 30.2 4.9 33 73-112 2-34 (316)
461 3ea0_A ATPase, para family; al 35.7 46 0.0016 28.3 5.1 40 74-113 3-43 (245)
462 3bfv_A CAPA1, CAPB2, membrane 35.7 48 0.0016 29.1 5.2 40 74-113 81-120 (271)
463 4amu_A Ornithine carbamoyltran 35.6 74 0.0025 29.3 6.5 37 73-114 179-215 (365)
464 3c3k_A Alanine racemase; struc 35.5 2.1E+02 0.0073 24.6 17.7 42 72-113 6-47 (285)
465 3grf_A Ornithine carbamoyltran 35.4 90 0.0031 28.3 7.0 38 73-115 160-197 (328)
466 2f62_A Nucleoside 2-deoxyribos 35.4 74 0.0025 25.4 5.8 38 351-389 62-105 (161)
467 2f5x_A BUGD; periplasmic bindi 35.4 2.4E+02 0.0083 25.1 13.5 144 272-438 113-277 (312)
468 3j20_B 30S ribosomal protein S 35.3 71 0.0024 26.6 5.8 109 282-410 46-158 (202)
469 2xzm_B RPS0E; ribosome, transl 35.3 51 0.0018 28.3 5.0 109 282-410 47-161 (241)
470 4eg0_A D-alanine--D-alanine li 35.2 37 0.0013 30.6 4.5 40 73-112 12-53 (317)
471 1ulz_A Pyruvate carboxylase N- 35.2 39 0.0013 32.3 4.9 33 74-113 2-34 (451)
472 2x4g_A Nucleoside-diphosphate- 35.1 56 0.0019 29.4 5.9 35 74-114 13-47 (342)
473 3vps_A TUNA, NAD-dependent epi 35.1 45 0.0015 29.7 5.1 36 73-114 6-41 (321)
474 1e6u_A GDP-fucose synthetase; 35.0 29 0.001 31.0 3.9 35 72-112 1-35 (321)
475 1gsa_A Glutathione synthetase; 35.0 35 0.0012 30.4 4.3 39 75-113 2-41 (316)
476 1d1q_A Tyrosine phosphatase (E 34.8 76 0.0026 25.2 5.9 85 72-159 5-96 (161)
477 4egb_A DTDP-glucose 4,6-dehydr 34.7 88 0.003 28.1 7.2 35 72-112 22-58 (346)
478 3m9w_A D-xylose-binding peripl 34.6 2.3E+02 0.008 24.7 18.0 215 74-349 2-224 (313)
479 3u9t_A MCC alpha, methylcroton 34.6 45 0.0015 33.9 5.4 36 72-114 26-61 (675)
480 1sbz_A Probable aromatic acid 34.6 61 0.0021 26.9 5.3 36 75-113 1-37 (197)
481 1mvl_A PPC decarboxylase athal 34.6 61 0.0021 27.2 5.4 38 73-115 18-56 (209)
482 3btv_A Galactose/lactose metab 34.5 1.7E+02 0.0058 27.6 9.3 71 307-389 48-126 (438)
483 3qk7_A Transcriptional regulat 34.2 2.3E+02 0.0079 24.5 18.5 212 73-347 5-223 (294)
484 1w25_A Stalked-cell differenti 34.2 3E+02 0.01 25.8 11.4 109 310-427 3-122 (459)
485 1qv9_A F420-dependent methylen 34.1 57 0.002 27.8 4.9 95 72-182 1-96 (283)
486 3i4f_A 3-oxoacyl-[acyl-carrier 34.1 36 0.0012 29.5 4.1 34 75-113 7-40 (264)
487 3jvd_A Transcriptional regulat 34.0 2.5E+02 0.0086 24.9 17.2 45 69-113 59-103 (333)
488 1vi6_A 30S ribosomal protein S 34.0 52 0.0018 27.6 4.7 102 309-424 69-175 (208)
489 3of5_A Dethiobiotin synthetase 33.9 59 0.002 27.7 5.4 38 74-111 3-40 (228)
490 3qvo_A NMRA family protein; st 33.7 47 0.0016 28.2 4.8 36 72-113 21-57 (236)
491 1zco_A 2-dehydro-3-deoxyphosph 33.6 2.4E+02 0.0081 24.5 11.2 104 273-390 25-138 (262)
492 3sds_A Ornithine carbamoyltran 33.6 2.1E+02 0.0072 26.2 9.2 38 73-116 187-224 (353)
493 2o1e_A YCDH; alpha-beta protei 33.5 96 0.0033 27.9 7.0 88 352-443 66-173 (312)
494 3l9w_A Glutathione-regulated p 33.3 1.1E+02 0.0039 28.7 7.7 71 74-160 4-78 (413)
495 2bon_A Lipid kinase; DAG kinas 33.2 61 0.0021 29.4 5.7 38 74-113 29-66 (332)
496 1vs1_A 3-deoxy-7-phosphoheptul 33.1 2.5E+02 0.0086 24.6 10.3 65 323-391 89-154 (276)
497 3p9x_A Phosphoribosylglycinami 32.7 1.6E+02 0.0056 24.6 7.7 74 74-158 2-89 (211)
498 2vvr_A Ribose-5-phosphate isom 32.6 59 0.002 25.6 4.6 34 75-112 2-35 (149)
499 2fn9_A Ribose ABC transporter, 32.6 2.4E+02 0.0082 24.2 16.1 41 73-113 1-41 (290)
500 3gi1_A LBP, laminin-binding pr 32.6 80 0.0027 28.0 6.2 87 352-443 56-162 (286)
No 1
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.4e-46 Score=372.73 Aligned_cols=370 Identities=17% Similarity=0.223 Sum_probs=275.8
Q ss_pred cccccccCEEEEEecCCCC---------CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee
Q 011954 68 PLNFMKSKLVLLVSHELSL---------SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS 138 (474)
Q Consensus 68 ~~~~~~~~kIl~v~~~~~~---------gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (474)
+.....|||||+++..+.| ||+++++.+|+++|.+.||+|++++.......... .. ...++.++.
T Consensus 14 ~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----~~--~~~~v~v~~ 87 (438)
T 3c48_A 14 LVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEI----VR--VAENLRVIN 87 (438)
T ss_dssp -----CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSE----EE--EETTEEEEE
T ss_pred cccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCccc----cc--ccCCeEEEE
Confidence 3344558899999987654 78899999999999999999999996543211000 00 011222111
Q ss_pred hh---------------------cHHHH-hhhc-CCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc---
Q 011954 139 AK---------------------GEKAI-NTAL-NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF--- 192 (474)
Q Consensus 139 ~~---------------------~~~~~-~~~~-~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--- 192 (474)
.. ..... .+.. +||+||+|....+... ..+... ...|+++++|+......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~-~~~~~~---~~~p~v~~~h~~~~~~~~~~ 163 (438)
T 3c48_A 88 IAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVG-WLLRDL---WRIPLIHTAHTLAAVKNSYR 163 (438)
T ss_dssp ECCSCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHH-HHHHHH---HTCCEEEECSSCHHHHSCC-
T ss_pred ecCCCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHH-HHHHHH---cCCCEEEEecCCcccccccc
Confidence 00 00111 2222 5999999975433222 212211 23588899998632110
Q ss_pred h------h-----hhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHH
Q 011954 193 K------L-----EYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVR 261 (474)
Q Consensus 193 ~------~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (474)
. . .....++.++.+++.+....+. +.+.+|++..++.|||||+|.+.|.+.... .+..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~----~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~-----~~~~~r 234 (438)
T 3c48_A 164 DDSDTPESEARRICEQQLVDNADVLAVNTQEEMQD----LMHHYDADPDRISVVSPGADVELYSPGNDR-----ATERSR 234 (438)
T ss_dssp ---CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHH----HHHHHCCCGGGEEECCCCCCTTTSCCC---------CHHHH
T ss_pred cccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHH----HHHHhCCChhheEEecCCccccccCCcccc-----hhhhhH
Confidence 0 0 0112234556666666555444 444578888899999999999988765321 123478
Q ss_pred HhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC--cEEEEEEcC----CCCcCchHHHHHHHHHHHc
Q 011954 262 ESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP--SMHAVVVGS----DMNAQTKFETELRNFVAEK 335 (474)
Q Consensus 262 ~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--~~~l~i~G~----g~~~~~~~~~~l~~~~~~~ 335 (474)
++++++.+.++|+++||+.+.||++.+++|+..+.+ ++| +++|+|+|+ |+ +.+.++++++++
T Consensus 235 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~p~~~~~l~i~G~~~~~g~-----~~~~l~~~~~~~ 302 (438)
T 3c48_A 235 RELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFD-------RDPDRNLRVIICGGPSGPNA-----TPDTYRHMAEEL 302 (438)
T ss_dssp HHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHH-------HCTTCSEEEEEECCBC-----------CHHHHHHHHT
T ss_pred HhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHh-------hCCCcceEEEEEeCCCCCCc-----HHHHHHHHHHHc
Confidence 899998889999999999999999999999999866 334 899999998 53 678899999999
Q ss_pred CCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCCh
Q 011954 336 KIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGV 413 (474)
Q Consensus 336 ~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~ 413 (474)
++.++|+|+|++ +++.++|+.||++|+||. .|+||++++|||+||+|||+++.||..|++.++.+|++++++| +
T Consensus 303 ~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~ 378 (438)
T 3c48_A 303 GVEKRIRFLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS--P 378 (438)
T ss_dssp TCTTTEEEECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCC--H
T ss_pred CCCCcEEEcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCC--H
Confidence 999999999987 789999999999999998 8999999999999999999999999999999999999999988 9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 011954 414 TPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYAKIHQPQSH 473 (474)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (474)
++++++|.++++|++.+++|++++++++.+ |+|+.+++++.++|++++++.+....+.+
T Consensus 379 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T 3c48_A 379 HAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANENVDGETHH 437 (438)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSCCCC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhcccCCCcCC
Confidence 999999999999999999999999999998 99999999999999999988766555544
No 2
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.2e-46 Score=370.77 Aligned_cols=360 Identities=17% Similarity=0.187 Sum_probs=270.5
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhcc-ceeeee--hh-------
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDR-GVQVLS--AK------- 140 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~------- 140 (474)
.|++|||+++++....||+++++.+++++|.+.||+|++++.............+...+... .+.+.. ..
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNR 116 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHH
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHHHHH
Confidence 46789999999987778999999999999999999999998654321111111111111111 111110 00
Q ss_pred cHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhh---hhhccccccccc-ccccccHHH
Q 011954 141 GEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLE---YVKHLPFVAGAM-IDSYTTAEY 216 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~---~~~~~~~~~~~~-~~s~~~~~~ 216 (474)
....+.+..+||+||+|+.....+... .. . ..|++++.|+......... ..+.+...+..+ +.+...
T Consensus 117 ~~~~~l~~~~~Dvv~~~~~~~~~~~~~-~~----~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~--- 187 (416)
T 2x6q_A 117 ENSKFIDLSSFDYVLVHDPQPAALIEF-YE----K-KSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYV--- 187 (416)
T ss_dssp HHHHSSCGGGSSEEEEESSTTGGGGGG-SC----C-CSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGS---
T ss_pred HHHHHHhhcCCCEEEEeccchhhHHHH-HH----h-cCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHH---
Confidence 112223446899999998665443221 11 1 1688999997643322111 122233444433 333222
Q ss_pred HHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHH
Q 011954 217 WKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESL 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~ 296 (474)
.+ +++..++.|||||+|...+.+.... ...+..++++++++++.++|+++||+.+.||++.+++|+..+.
T Consensus 188 -~~------~~~~~~~~vi~ngvd~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 257 (416)
T 2x6q_A 188 -QP------ELDRNKAVIMPPSIDPLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVK 257 (416)
T ss_dssp -CT------TSCTTTEEECCCCBCTTSTTTSCCC---HHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHH
T ss_pred -Hh------hCCccceEEeCCCCChhhhcccccC---hhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHH
Confidence 22 2344789999999998766532211 1125678899999888999999999999999999999999886
Q ss_pred HHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC-----ChHHHHhcCCEEEEcCCCCCCCC
Q 011954 297 QLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL-----TVSPYLASIDVLVQNSQARGECF 371 (474)
Q Consensus 297 ~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-----~~~~~~~~adv~v~ps~~~~E~~ 371 (474)
+ +.|+++|+|+|+|+..++++.+.++++++++++.++|+|+|+.. ++.++|+.||++|+||. .|||
T Consensus 258 ~-------~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E~~ 328 (416)
T 2x6q_A 258 E-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--REGF 328 (416)
T ss_dssp H-------HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SCSS
T ss_pred H-------hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cCCC
Confidence 6 44899999999997544456788999999999999999999653 79999999999999999 8999
Q ss_pred chHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011954 372 GRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMS 451 (474)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~ 451 (474)
|++++|||+||+|||+|+.||++|++.++.+|++++ | +++++++|.++++|++.+++|++++++++.++|+|+.++
T Consensus 329 ~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~ 404 (416)
T 2x6q_A 329 GLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHM 404 (416)
T ss_dssp CHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred ccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 999999999999999999999999999999999998 6 999999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHH
Q 011954 452 QRIALVLREVL 462 (474)
Q Consensus 452 ~~~~~~~~~~~ 462 (474)
+++.++|++++
T Consensus 405 ~~~~~~~~~l~ 415 (416)
T 2x6q_A 405 ERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=2.6e-46 Score=370.86 Aligned_cols=366 Identities=17% Similarity=0.122 Sum_probs=279.1
Q ss_pred ccCEEEEEecCCCC---CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcc----------cchhccceeeeeh
Q 011954 73 KSKLVLLVSHELSL---SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLE----------HKMLDRGVQVLSA 139 (474)
Q Consensus 73 ~~~kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 139 (474)
++||||++++.+.+ ||+++++.+|+++|+++||+|+++++..+.........+. ......++.+...
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 47999999988655 8889999999999999999999999654433211000000 0001223333321
Q ss_pred hc--------------------------HHHHhh-----hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccc
Q 011954 140 KG--------------------------EKAINT-----ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMR 188 (474)
Q Consensus 140 ~~--------------------------~~~~~~-----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 188 (474)
.. ...+.+ ..+||+||+|+...+.....+.+ . ...|+++++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~-~---~~~~~v~~~h~~~ 156 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKK-Y---FKIPAVFTIHRLN 156 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHH-H---HCCCEEEEESCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhh-c---cCCCEEEEecccc
Confidence 11 011111 35999999998655433222221 1 3468999999875
Q ss_pred cccchh------------------hhhhcccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhh
Q 011954 189 GHYFKL------------------EYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDS 250 (474)
Q Consensus 189 ~~~~~~------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~ 250 (474)
...... .....+..++.+++.|....+. ....++.+..++.|||||+|.+.|.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~----~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 232 (439)
T 3fro_A 157 KSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLID----EWGFFRNFEGKITYVFNGIDCSFWNESYLT 232 (439)
T ss_dssp CCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHH----THHHHGGGTTSEEECCCCCCTTTSCGGGSC
T ss_pred cccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHH----HhhhhhhcCCceeecCCCCCchhcCccccc
Confidence 332211 1122234556666666655544 334556788999999999999999876322
Q ss_pred HHHHHhHHHHHHhcCCCCCCEEEEEecccc-cCcchHHHHHHHHHHHHHHHHhccCC--CcEEEEEEcCCCCcCchHHHH
Q 011954 251 VARRVLREHVRESLGVRDDDLLFAIINSVS-RGKGQDLFLHSFYESLQLIREKKLQV--PSMHAVVVGSDMNAQTKFETE 327 (474)
Q Consensus 251 ~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~--~~~~l~i~G~g~~~~~~~~~~ 327 (474)
......+..++++++++++ ++|+++||+. +.||++.+++|++++.+ +. ++++|+|+|+|+. .+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~ 301 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGW 301 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHH
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHH
Confidence 2233446889999999877 9999999999 99999999999998865 33 7999999999861 24489
Q ss_pred HHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceee
Q 011954 328 LRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLL 405 (474)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l 405 (474)
+++++++++ +.+.|.|+ .+++.++|+.||++|+||. .|+||++++|||+||+|||+|+.||..|++.++ +|++
T Consensus 302 l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~ 376 (439)
T 3fro_A 302 ARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGIL 376 (439)
T ss_dssp HHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEE
T ss_pred HHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEE
Confidence 999999998 78899995 4779999999999999999 899999999999999999999999999999877 9999
Q ss_pred ecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011954 406 HPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 465 (474)
++++| +++++++|.++++ |++.+++|++++++.+ ++|||+.+++++.++|++++++.
T Consensus 377 ~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 377 VKAGD--PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp ECTTC--HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCB
T ss_pred eCCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhh
Confidence 99999 9999999999999 9999999999999999 56999999999999999998754
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.5e-46 Score=365.58 Aligned_cols=357 Identities=21% Similarity=0.246 Sum_probs=277.2
Q ss_pred ccccCEEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee----------
Q 011954 71 FMKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS---------- 138 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 138 (474)
+|++|||+++++.+++ ||+++++.+++++| .||+|++++.......... .....++.+..
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 72 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHA------YDKTLDYEVIRWPRSVMLPTP 72 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHH------HHTTCSSEEEEESSSSCCSCH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhh------hccccceEEEEccccccccch
Confidence 4678999999987764 78899999999999 6999999997654321000 00122333322
Q ss_pred --hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc-----hhhhhhccccccccccccc
Q 011954 139 --AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF-----KLEYVKHLPFVAGAMIDSY 211 (474)
Q Consensus 139 --~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~-----~~~~~~~~~~~~~~~~~s~ 211 (474)
...+..+.+..+||+||+|......++....+.. ..+++++++|+....+. .......++.++.+++.|.
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 149 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQA---GASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQ 149 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHT---TCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCH
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhc---CCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCH
Confidence 1234566677899999999865554444333221 12458888997532211 1122333456666666666
Q ss_pred ccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHH
Q 011954 212 TTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHS 291 (474)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a 291 (474)
...+.+. +.++ ...++.+||||+|.+.+.+.... .+..++++++++++.++|+++||+.+.||++.+++|
T Consensus 150 ~~~~~~~----~~~~-~~~~~~vi~ngv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a 219 (394)
T 3okp_A 150 YTLRRFK----SAFG-SHPTFEHLPSGVDVKRFTPATPE-----DKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKA 219 (394)
T ss_dssp HHHHHHH----HHHC-SSSEEEECCCCBCTTTSCCCCHH-----HHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHH
T ss_pred HHHHHHH----HhcC-CCCCeEEecCCcCHHHcCCCCch-----hhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHH
Confidence 5555444 4455 45789999999999988763221 157789999999888999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCC-
Q 011954 292 FYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARG- 368 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~- 368 (474)
+.++.+ ++++++|+|+|+|+ +.+.+++++ .++.++|+|+|++ +++.++|+.||++|+||. .
T Consensus 220 ~~~l~~-------~~~~~~l~i~G~g~-----~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~--~~ 283 (394)
T 3okp_A 220 MPQVIA-------ARPDAQLLIVGSGR-----YESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR--TR 283 (394)
T ss_dssp HHHHHH-------HSTTCEEEEECCCT-----THHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC--CB
T ss_pred HHHHHh-------hCCCeEEEEEcCch-----HHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc--cc
Confidence 998876 45899999999986 778888888 5666899999987 899999999999999999 6
Q ss_pred ------CCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 011954 369 ------ECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVK 442 (474)
Q Consensus 369 ------E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 442 (474)
|++|++++|||++|+|||+++.||..|++.++ +|++++++| +++++++|.++++|++.++++++++++++.
T Consensus 284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 360 (394)
T 3okp_A 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDPIRRAAMGAAGRAHVE 360 (394)
T ss_dssp GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888 999999998 999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhhhhc
Q 011954 443 DRFLEHHMSQRIALVLREVLQYAKI 467 (474)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~~~~~~~ 467 (474)
++|+|+.+++++.++|+++..+...
T Consensus 361 ~~~s~~~~~~~~~~~~~~~~r~~~~ 385 (394)
T 3okp_A 361 AEWSWEIMGERLTNILQSEPRKLAA 385 (394)
T ss_dssp HHTBHHHHHHHHHHHHHSCCC----
T ss_pred HhCCHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999999998865543
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=2.2e-46 Score=377.39 Aligned_cols=373 Identities=15% Similarity=0.150 Sum_probs=275.2
Q ss_pred cCEEEEEecCCC-------------CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCc-hhhhhhcccchhccceeeeeh
Q 011954 74 SKLVLLVSHELS-------------LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEP-DEVIYSLEHKMLDRGVQVLSA 139 (474)
Q Consensus 74 ~~kIl~v~~~~~-------------~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (474)
+|||+++++.+. .||+++++.+|+++|.+.||+|+|++....... ......+.......++.++..
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 86 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRI 86 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEe
Confidence 589999998653 377789999999999999999999996543211 000000000000123332211
Q ss_pred ---------------------hcHHHHhhh--cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch---
Q 011954 140 ---------------------KGEKAINTA--LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK--- 193 (474)
Q Consensus 140 ---------------------~~~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--- 193 (474)
..+..+.+. .+||+||+|+...+.... .+... ...|+++++|+.......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~-~~~~~---~~~p~v~~~H~~~~~~~~~~~ 162 (499)
T 2r60_A 87 PFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGV-LLKNI---KGLPFTFTGHSLGAQKMEKLN 162 (499)
T ss_dssp CCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHH-HHHHH---HCCCEEEECSSCHHHHHHTTC
T ss_pred cCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHH-HHHHh---cCCcEEEEccCcccccchhhc
Confidence 112233333 589999999754433222 22211 235889999986321110
Q ss_pred ----------h---------hhhhcccccccccccccccHHHHHHhHHHH--hc-C----CCCCeEEEeCCCCccccchh
Q 011954 194 ----------L---------EYVKHLPFVAGAMIDSYTTAEYWKNRTRER--LG-I----RMPETYVVHLGNSKDLMDIA 247 (474)
Q Consensus 194 ----------~---------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~-~----~~~ki~vi~ngvd~~~~~~~ 247 (474)
. .....++.++.+++.|....+. +.+. +| + +..++.|||||+|.+.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~----~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~ 238 (499)
T 2r60_A 163 VNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFG----QYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGE 238 (499)
T ss_dssp CCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHH----TTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSC
T ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHH----HHhhhcccccccccCCCCeEEECCCcChhhcCcc
Confidence 0 0122234556666666555444 3334 56 5 66789999999999988765
Q ss_pred hhhHHHHHhHHHHHHhcC-----CCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc--
Q 011954 248 EDSVARRVLREHVRESLG-----VRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA-- 320 (474)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~-----~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~-- 320 (474)
... ..+..+|+++| ++.+.++|+++||+.+.||++.+++|+..+.+... ..++|+|+|+++..
T Consensus 239 ~~~----~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~------~~~~l~i~G~~~~~~~ 308 (499)
T 2r60_A 239 YGD----KIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQD------KANLVLTLRGIENPFE 308 (499)
T ss_dssp CCH----HHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHH------HCEEEEEESSCSBTTT
T ss_pred chh----hhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCC------CceEEEEECCCCCccc
Confidence 321 12456788888 77788899999999999999999999998865321 24689999983211
Q ss_pred --------CchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcC----CEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 321 --------QTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASI----DVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 321 --------~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~a----dv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
..++.++++++++++++.++|+|+|++ +++.++|+.| |++|+||. .||||++++|||+||+|||
T Consensus 309 ~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~PvI 386 (499)
T 2r60_A 309 DYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPAV 386 (499)
T ss_dssp BCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCEE
T ss_pred ccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCEE
Confidence 111278999999999999999999986 8899999999 99999999 8999999999999999999
Q ss_pred EcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 387 GTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
+|+.||+.|++.++.+|++++++| +++++++|.++++|++.+++|++++++++.++|||+.+++++.++|++++.++.
T Consensus 387 ~s~~~g~~e~v~~~~~g~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 464 (499)
T 2r60_A 387 VTRNGGPAEILDGGKYGVLVDPED--PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKD 464 (499)
T ss_dssp EESSBHHHHHTGGGTSSEEECTTC--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHhcCCceEEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999998 999999999999999999999999999999999999999999999999998654
Q ss_pred cC
Q 011954 467 IH 468 (474)
Q Consensus 467 ~~ 468 (474)
..
T Consensus 465 ~~ 466 (499)
T 2r60_A 465 EE 466 (499)
T ss_dssp --
T ss_pred hh
Confidence 43
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=2.6e-45 Score=358.46 Aligned_cols=350 Identities=20% Similarity=0.231 Sum_probs=263.3
Q ss_pred CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcc-cchhccceeee--------ehhcHHHHhhhcCCCEEEE
Q 011954 86 LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLE-HKMLDRGVQVL--------SAKGEKAINTALNADLVVL 156 (474)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~DiV~~ 156 (474)
.||+++++.+|+++|.++||+|++++...+.........+. ..+........ ....+..+.+..+||+||+
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~ 105 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHV 105 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccccCCceEEEecccccccccccccccHHHHHHHHHHHHHcCCCEEEE
Confidence 48889999999999999999999999754321100000000 00000000000 0112344556689999999
Q ss_pred cccchhhHHhHHhhhcccccccceeeeeecccccc------chhhhhhcccccccccccccccHHHHHHhHHHHhcCCCC
Q 011954 157 NTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY------FKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMP 230 (474)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (474)
|+.....+...+..... ....|+++++|+..... +.......++.++.+++.|....+.+. +.++. ..
T Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~----~~~~~-~~ 179 (394)
T 2jjm_A 106 HYAIPHAICAYLAKQMI-GERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETH----ELVKP-NK 179 (394)
T ss_dssp CSSTTHHHHHHHHHHHT-TTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHH----HHTCC-SS
T ss_pred cchhHHHHHHHHHHHhh-cCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHH----HhhCC-cc
Confidence 97654433332222211 11358899999853211 111223334566666666666555443 34444 57
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEE
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMH 310 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (474)
++.+||||+|.+.+.+.. +..++++++++++.++|+++|++.+.||++.+++|+..+.+ + ++++
T Consensus 180 ~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~-~~~~ 243 (394)
T 2jjm_A 180 DIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVT-------E-VDAK 243 (394)
T ss_dssp CEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHH-------S-SCCE
T ss_pred cEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHh-------h-CCCE
Confidence 899999999999887653 24577889988888999999999999999999999998865 3 5789
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA 390 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~ 390 (474)
|+|+|+|+ ..++++++++++++.++|.|+|+.+++.++|+.||++|+||. .|+||++++|||+||+|||+++.
T Consensus 244 l~i~G~g~-----~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~PvI~~~~ 316 (394)
T 2jjm_A 244 LLLVGDGP-----EFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSE--KESFGLVLLEAMACGVPCIGTRV 316 (394)
T ss_dssp EEEECCCT-----THHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCS--CCSCCHHHHHHHHTTCCEEEECC
T ss_pred EEEECCch-----HHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccc--cCCCchHHHHHHhcCCCEEEecC
Confidence 99999986 678999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred CCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 391 GGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 391 ~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
||..|++.++.+|++++++| +++++++|.++++|++.+++|++++++++.++|+|+.++++++++|++++++.+
T Consensus 317 ~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 390 (394)
T 2jjm_A 317 GGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDDK 390 (394)
T ss_dssp TTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC----
T ss_pred CChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998 999999999999999999999999999998889999999999999999987643
No 7
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.6e-44 Score=355.21 Aligned_cols=358 Identities=16% Similarity=0.142 Sum_probs=269.0
Q ss_pred CEEEEEecCCCC-CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCc-hhhhh--hcccchhcccee--eeehhcHHHHhhh
Q 011954 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGAEVVWITNQKPNEP-DEVIY--SLEHKMLDRGVQ--VLSAKGEKAINTA 148 (474)
Q Consensus 75 ~kIl~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~ 148 (474)
|||+++++.++. ||+++++.+|+++|.+. |+|++++....... ..... ..........+. .+.........+.
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDV 79 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHTTCCSTTCCHHHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccccccccccchHHHHHHHHHh
Confidence 799999987665 66689999999999999 99999985432111 00000 000000001111 1122233455567
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccc--cccccccccHHHHHHhHHHHhc
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVA--GAMIDSYTTAEYWKNRTRERLG 226 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~ 226 (474)
.+||+||+|...............++. ..+.+...|......... ....+...+ .+++.|....+.+.+ ++
T Consensus 80 ~~~Div~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~S~~~~~~~~~-----~~ 152 (413)
T 3oy2_A 80 HKPDIVMIYNDPIVIGNYLLAMGKCSH-RTKIVLYVDLVSKNIREN-LWWIFSHPKVVGVMAMSKCWISDICN-----YG 152 (413)
T ss_dssp HCCSEEEEEECHHHHHHHHHHGGGCCS-CCEEEEEECCCSBSCCGG-GGGGGGCTTEEEEEESSTHHHHHHHH-----TT
T ss_pred cCCCEEEEcchHHHHHHHHHHhccCCC-CCceeeeccccchhhHHH-HHHHHhccCCceEEEcCHHHHHHHHH-----cC
Confidence 899999999543322211222222222 245566666553333222 344556655 777777776665543 56
Q ss_pred CCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCC--CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhcc
Q 011954 227 IRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRD--DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKL 304 (474)
Q Consensus 227 ~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~ 304 (474)
. ..++.+||||+|.+.|. ..++++++++ +.++|+++||+.+.||++.+++|+.++.+
T Consensus 153 ~-~~~~~vi~ngvd~~~~~-------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~------- 211 (413)
T 3oy2_A 153 C-KVPINIVSHFVDTKTIY-------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS------- 211 (413)
T ss_dssp C-CSCEEECCCCCCCCCCT-------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHH-------
T ss_pred C-CCceEEeCCCCCHHHHH-------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHH-------
Confidence 5 57899999999998872 2356678877 78999999999999999999999999866
Q ss_pred CCCcEEEEEEcCCCCcC-chHHHHHHHHHHHcCCCCe-------EEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchH
Q 011954 305 QVPSMHAVVVGSDMNAQ-TKFETELRNFVAEKKIQDH-------VHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRI 374 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~-~~~~~~l~~~~~~~~l~~~-------v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~ 374 (474)
++++++|+|+|+|+... .+..+.++++++++++.++ +.+.|+. +++.++|+.||++|+||. .|+||++
T Consensus 212 ~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~--~E~~~~~ 289 (413)
T 3oy2_A 212 KYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS--GEGFGLC 289 (413)
T ss_dssp HCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS--CCSSCHH
T ss_pred hCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC--cCCCCcH
Confidence 45899999999987432 1245899999999999886 8888986 589999999999999999 8999999
Q ss_pred HHHHHhcCCCEEEcCCCCcceeeeeCCc---------------ee--eecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 375 TIEAMAFQLPVLGTAAGGTMEIVVNGTT---------------GL--LHPTGKEGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 375 ~~EAma~G~PvI~s~~~g~~e~v~~~~~---------------G~--l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
++|||+||+|||+|+.||.+|++.++.+ |+ +++++| +++++++| ++++|++.+++|++++
T Consensus 290 ~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~~~~~~~~~a 366 (413)
T 3oy2_A 290 SAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEKNRKEYGKRV 366 (413)
T ss_dssp HHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCC--HHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 9999999999999999999999988887 99 999998 99999999 9999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 438 YERVKDRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
++++.++|||+.++++++++|+++++++.
T Consensus 367 ~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 367 QDFVKTKPTWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 99999899999999999999999997653
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3.7e-44 Score=360.02 Aligned_cols=367 Identities=18% Similarity=0.139 Sum_probs=265.8
Q ss_pred CEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhh-----hc-------ccc--hhccceee
Q 011954 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIY-----SL-------EHK--MLDRGVQV 136 (474)
Q Consensus 75 ~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~~-------~~~--~~~~~~~~ 136 (474)
||||++++.+.| ||+++++.+|+++|.++||+|+|++...+........ .+ ... ....++.+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 789999987643 7779999999999999999999999653210000000 00 000 00123333
Q ss_pred eehh--------------------------------cHHHHh----hhcCCCEEEEcccchhhHHhHHhhhcccccccce
Q 011954 137 LSAK--------------------------------GEKAIN----TALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKV 180 (474)
Q Consensus 137 ~~~~--------------------------------~~~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (474)
+... ....+. +..+||+||+|+...+.+ ...+... .....|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~-~~~~~~~-~~~~~p~ 158 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA-ETPEIPS 158 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS-SSCCCCE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHH-HHHHhhc-ccCCCCE
Confidence 2110 011122 256899999998544332 2222211 1134689
Q ss_pred eeeeecccccc-ch-------------------------hhhhhcccccccccccccccHHHHHHhHHHHhc--------
Q 011954 181 LWWIHEMRGHY-FK-------------------------LEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLG-------- 226 (474)
Q Consensus 181 v~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-------- 226 (474)
++++|+..... .. ......+..++.+++.|....+.+.+. .+|
T Consensus 159 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~g~~~~~~~~ 235 (485)
T 1rzu_A 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTA---EFGMGLEGVIG 235 (485)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH---HHHTTCHHHHH
T ss_pred EEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhcc---ccCcchHHHHH
Confidence 99999863211 00 011122345566666666655554331 123
Q ss_pred CCCCCeEEEeCCCCccccchhhhh-----------HHHHHhHHHHHHhcCCCCC-CEEEEEecccccCcchHHHHHHHHH
Q 011954 227 IRMPETYVVHLGNSKDLMDIAEDS-----------VARRVLREHVRESLGVRDD-DLLFAIINSVSRGKGQDLFLHSFYE 294 (474)
Q Consensus 227 ~~~~ki~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~~-~~~i~~vgrl~~~Kg~~~ll~a~~~ 294 (474)
.+..++.|||||+|.+.|.+.... ..+...+..++++++++++ .++|+++||+.+.||++.+++|+.+
T Consensus 236 ~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 315 (485)
T 1rzu_A 236 SRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDE 315 (485)
T ss_dssp TTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHH
T ss_pred hhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHH
Confidence 456889999999999988765321 0112235678999999875 6799999999999999999999998
Q ss_pred HHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEE-EecCCCC-hHHHHhcCCEEEEcCCCCCCCCc
Q 011954 295 SLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVH-FVNKTLT-VSPYLASIDVLVQNSQARGECFG 372 (474)
Q Consensus 295 l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-~~~~~~~adv~v~ps~~~~E~~~ 372 (474)
+.+ ++++|+|+|+|+. ++.+.+++++++++ ++|+ |.|+.++ +..+|+.||++|+||. .|+||
T Consensus 316 l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~~ 379 (485)
T 1rzu_A 316 IVS---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCG 379 (485)
T ss_dssp HHH---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSC
T ss_pred HHh---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcEEEecCCCHHHHHHHHhcCCEEEECcc--cCCCC
Confidence 865 6899999999851 25788999999886 6787 7898644 5899999999999999 89999
Q ss_pred hHHHHHHhcCCCEEEcCCCCcceeeeeC---------CceeeecCCCCChHHHHHHHHHHh---hCHHHHHHHHHHHHHH
Q 011954 373 RITIEAMAFQLPVLGTAAGGTMEIVVNG---------TTGLLHPTGKEGVTPLANNIVKLA---THVERRLTMGKKGYER 440 (474)
Q Consensus 373 ~~~~EAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~~~~~ 440 (474)
++++|||+||+|||+|+.||+.|++.++ .+|++++++| +++|+++|.+++ +|++.+++|++++++
T Consensus 380 ~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~- 456 (485)
T 1rzu_A 380 LTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK- 456 (485)
T ss_dssp SHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 9999999999999999999999999988 8999999998 999999999999 799999999999875
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhhhhc
Q 011954 441 VKDRFLEHHMSQRIALVLREVLQYAKI 467 (474)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~~~~~~~ 467 (474)
++|||+.++++|+++|++++.....
T Consensus 457 --~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 457 --SDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp --CCCBHHHHHHHHHHHHHHHTC----
T ss_pred --HhCChHHHHHHHHHHHHHhhCCCCC
Confidence 7799999999999999999876543
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.1e-43 Score=356.62 Aligned_cols=365 Identities=15% Similarity=0.102 Sum_probs=263.3
Q ss_pred CEEEEEecCCC----CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhh--------hc--ccch---hccceeee
Q 011954 75 KLVLLVSHELS----LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIY--------SL--EHKM---LDRGVQVL 137 (474)
Q Consensus 75 ~kIl~v~~~~~----~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~--~~~~---~~~~~~~~ 137 (474)
|||+++++.+. .||+++++.+|+++|.++||+|+|++...+........ .+ ...+ ...++.++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 78999998754 37789999999999999999999999653211000000 00 0000 01233322
Q ss_pred eh--------------------------------hcHHHHhh----hcCCCEEEEcccchhhHHhHHhhhccccccccee
Q 011954 138 SA--------------------------------KGEKAINT----ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVL 181 (474)
Q Consensus 138 ~~--------------------------------~~~~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v 181 (474)
.. .....+.+ ..+||+||+|+...+.+ ...+.. .....|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~--~~~~~p~v 157 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAA--RGRPAKSV 157 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHH--TTCSSEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhh--ccCCCCEE
Confidence 11 01112223 26899999998554433 222221 11346899
Q ss_pred eeeecccccc-ch-------------------------hhhhhcccccccccccccccHHHHHHhHHHHhcCC-------
Q 011954 182 WWIHEMRGHY-FK-------------------------LEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIR------- 228 (474)
Q Consensus 182 ~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~------- 228 (474)
+++|+..... .. ......+..++.+++.|....+.+.+. .+|..
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~ 234 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEP---QFAYGMEGLLQQ 234 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH---HHHTTCHHHHHH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhcc---ccCcchHHHHHh
Confidence 9999863211 00 001112344556666666555544321 13432
Q ss_pred -C--CCeEEEeCCCCccccchhhhh-----------HHHHHhHHHHHHhcCCCC--CCEEEEEecccccCcchHHHHHHH
Q 011954 229 -M--PETYVVHLGNSKDLMDIAEDS-----------VARRVLREHVRESLGVRD--DDLLFAIINSVSRGKGQDLFLHSF 292 (474)
Q Consensus 229 -~--~ki~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~--~~~~i~~vgrl~~~Kg~~~ll~a~ 292 (474)
. .++.|||||+|.+.|.+.... ......+..++++++++. +.++|+++||+.+.||++.+++|+
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~ 314 (485)
T 2qzs_A 235 RHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEAL 314 (485)
T ss_dssp HHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHH
T ss_pred hccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHH
Confidence 2 789999999999988765321 011223567899999986 678999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEE-EecCCCC-hHHHHhcCCEEEEcCCCCCCC
Q 011954 293 YESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVH-FVNKTLT-VSPYLASIDVLVQNSQARGEC 370 (474)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-~~~~~~~adv~v~ps~~~~E~ 370 (474)
+.+.+ ++++|+|+|+|+. ++.+.+++++++++ ++|+ |.|+.++ +..+|+.||++|+||. .|+
T Consensus 315 ~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~ 378 (485)
T 2qzs_A 315 PGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEYP--GQVGVQIGYHEAFSHRIMGGADVILVPSR--FEP 378 (485)
T ss_dssp HHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHST--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCS
T ss_pred HHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhCC--CcEEEeCCCCHHHHHHHHHhCCEEEECCc--cCC
Confidence 98865 6899999999851 26788999999886 6786 8898644 5899999999999999 899
Q ss_pred CchHHHHHHhcCCCEEEcCCCCcceeeeeC---------CceeeecCCCCChHHHHHHHHHHh---hCHHHHHHHHHHHH
Q 011954 371 FGRITIEAMAFQLPVLGTAAGGTMEIVVNG---------TTGLLHPTGKEGVTPLANNIVKLA---THVERRLTMGKKGY 438 (474)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~~~ 438 (474)
||++++|||+||+|||+|++||+.|++.++ .+|++++++| +++|+++|.+++ +|++.+++|+++++
T Consensus 379 ~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 456 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSN--AWSLLRAIRRAFVLWSRPSLWRFVQRQAM 456 (485)
T ss_dssp SCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSS--HHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988 8999999998 999999999999 79999999999987
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 439 ERVKDRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
+ ++|||+.++++|+++|++++....
T Consensus 457 ~---~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 457 A---MDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp H---CCCCHHHHHHHHHHHHHHHC----
T ss_pred h---hcCCHHHHHHHHHHHHHHhhhhhc
Confidence 4 779999999999999999976543
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=3e-44 Score=348.47 Aligned_cols=348 Identities=16% Similarity=0.102 Sum_probs=263.1
Q ss_pred CEEEEEecCCC-CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee---------------
Q 011954 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS--------------- 138 (474)
Q Consensus 75 ~kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 138 (474)
|||+++++.+. .||+++++.+++++|+++||+|++++......... ++.+..
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~ 68 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPK------------AFELIQVPVKSHTNHGRNAEY 68 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCT------------TCEEEECCCCCSSHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCCC------------CcEEEEEccCcccchhhHHHH
Confidence 68999998754 47889999999999999999999999653221110 111111
Q ss_pred hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh-hhhh-----cc--cccccccccc
Q 011954 139 AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL-EYVK-----HL--PFVAGAMIDS 210 (474)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-~~~~-----~~--~~~~~~~~~s 210 (474)
......+.+..+||+||+|+...+........ ....+.+++.|......... .... .+ ...+.+++.|
T Consensus 69 ~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 144 (374)
T 2iw1_A 69 YAWVQNHLKEHPADRVVGFNKMPGLDVYFAAD----VCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLT 144 (374)
T ss_dssp HHHHHHHHHHSCCSEEEESSCCTTCSEEECCS----CCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCceeeeccc----cccceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcC
Confidence 11234455668999999997544321111000 01122333334322111110 1111 11 1345555555
Q ss_pred cccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHH
Q 011954 211 YTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLH 290 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~ 290 (474)
... .+.+.+.+|++..++.+||||+|.+.|.+..... .+..+++++++++++++++++||+.+.||++.+++
T Consensus 145 ~~~----~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 145 DKQ----IADFQKHYQTEPERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp HHH----HHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHH
T ss_pred HHH----HHHHHHHhCCChhheEEecCCcCHHhcCcccchh----HHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHH
Confidence 544 4445556788888999999999999887654321 14678899999889999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGEC 370 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~ 370 (474)
|+..+.+.. .++++|+|+|+|+ .+.++++++++++.++|+|+|+.+++.++|+.||++|+||. .|+
T Consensus 217 a~~~l~~~~------~~~~~l~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~--~e~ 282 (374)
T 2iw1_A 217 ALASLPESL------RHNTLLFVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEA 282 (374)
T ss_dssp HHHTSCHHH------HHTEEEEEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCS
T ss_pred HHHHhHhcc------CCceEEEEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccc--cCC
Confidence 999875521 2689999999984 36788999999999999999999999999999999999998 899
Q ss_pred CchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeec-CCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 371 FGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHP-TGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~-~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
||++++|||+||+|||+++.||..|++.++.+|++++ ++| +++++++|.++++|++.+++|++++++.+.+ |+|+.
T Consensus 283 ~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 359 (374)
T 2iw1_A 283 AGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADT-QDLYS 359 (374)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-SCCSC
T ss_pred cccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-hhHHH
Confidence 9999999999999999999999999999999999998 778 9999999999999999999999999999886 79999
Q ss_pred HHHHHHHHHHHHHh
Q 011954 450 MSQRIALVLREVLQ 463 (474)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (474)
+++++.++++..++
T Consensus 360 ~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 360 LPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987553
No 11
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=5e-43 Score=351.72 Aligned_cols=366 Identities=19% Similarity=0.161 Sum_probs=253.0
Q ss_pred ccCEEEEEecCCCC----CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhh----hcc-----c-----chhccce
Q 011954 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIY----SLE-----H-----KMLDRGV 134 (474)
Q Consensus 73 ~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~----~~~-----~-----~~~~~~~ 134 (474)
..|||||++.+..| ||...++..|.++|+++||+|.|+++.++........ .+. . .....|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 36999999988655 7778999999999999999999999765432210000 000 0 0001111
Q ss_pred eeeeh----------------------------hcHH---------HHhh-------------hcCCCEEEEcccchhhH
Q 011954 135 QVLSA----------------------------KGEK---------AINT-------------ALNADLVVLNTAVAGKW 164 (474)
Q Consensus 135 ~~~~~----------------------------~~~~---------~~~~-------------~~~~DiV~~~~~~~~~~ 164 (474)
.++.. ...+ .+.. ...+||+|+|+..++..
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 11100 0000 0000 13467888998655543
Q ss_pred HhHHhhhcc---cccccceeeeeeccccccc-h----------h----------------------hhhhcccccccccc
Q 011954 165 LDGVLKDKV---SQVLPKVLWWIHEMRGHYF-K----------L----------------------EYVKHLPFVAGAMI 208 (474)
Q Consensus 165 ~~~~~~~~~---~~~~~~~v~~~h~~~~~~~-~----------~----------------------~~~~~~~~~~~~~~ 208 (474)
...+..... .....++++|+|++..... . . .....+..++.+++
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 322221111 1124689999997532110 0 0 00111234455666
Q ss_pred cccccHHHHHHhHHHHhc--------CCCCCeEEEeCCCCccccchhhh------------hHHHHHhHHHHHHhcCCC-
Q 011954 209 DSYTTAEYWKNRTRERLG--------IRMPETYVVHLGNSKDLMDIAED------------SVARRVLREHVRESLGVR- 267 (474)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~--------~~~~ki~vi~ngvd~~~~~~~~~------------~~~~~~~~~~~r~~~~~~- 267 (474)
+|....+.+ ...++ ....++.+|+||||.+.|.|..+ ...+...+..+++.+|++
T Consensus 248 VS~~~a~ei----~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~ 323 (536)
T 3vue_A 248 VSPYYAEEL----ISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPV 323 (536)
T ss_dssp SCHHHHHHH----HTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCC
T ss_pred cCHHHhhhh----hcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCC
Confidence 665554443 33332 23568999999999999987532 123345567888899886
Q ss_pred -CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 -DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 -~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
++.++|+++||+.++||++.+++|+.++.+ .+.+|+|+|.|.. +....++.....++ +++.+.+.
T Consensus 324 d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~~--~~v~~~~~ 389 (536)
T 3vue_A 324 DRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKYP--GKVRAVVK 389 (536)
T ss_dssp CTTSCEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHST--TTEEEECS
T ss_pred CCCCcEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhcC--CceEEEEe
Confidence 455899999999999999999999998854 6789999998852 24555666666654 57888875
Q ss_pred C--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCcee----------eecCCCCChH
Q 011954 347 T--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGL----------LHPTGKEGVT 414 (474)
Q Consensus 347 ~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~----------l~~~~d~~~~ 414 (474)
. +++..+|+.||++|+||+ .|+||++++|||+||+|||+|++||++|+|.|+++|+ ++++.| ++
T Consensus 390 ~~~~~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d--~~ 465 (536)
T 3vue_A 390 FNAPLAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD--VK 465 (536)
T ss_dssp CCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHH--HH
T ss_pred ccHHHHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCC--HH
Confidence 4 668889999999999999 8999999999999999999999999999999999998 666667 99
Q ss_pred HHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 415 PLANNIVKLAT--HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 415 ~la~~i~~ll~--~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+|+++|.++++ +.+.+++|.+++ +.++|||++++++|+++|+++..
T Consensus 466 ~la~ai~ral~~~~~~~~~~~~~~a---m~~~fSW~~~A~~y~~ly~~L~~ 513 (536)
T 3vue_A 466 KVAATLKRAIKVVGTPAYEEMVRNC---MNQDLSWKGPAKNWENVLLGLGV 513 (536)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHH---HHSCCSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhhh
Confidence 99999998876 545577776665 45789999999999999999743
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=3.1e-42 Score=338.08 Aligned_cols=351 Identities=18% Similarity=0.176 Sum_probs=261.0
Q ss_pred ccCEEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhc----cce-ee-e---ehhc
Q 011954 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLD----RGV-QV-L---SAKG 141 (474)
Q Consensus 73 ~~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-~---~~~~ 141 (474)
+||||+++++.+++ ||+++++.+++++|.+.||+|++++.................+.. ... .. + ....
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATHRK 98 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHHHH
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHHHH
Confidence 47899999987644 777899999999999999999999966543210000000000000 000 00 0 0123
Q ss_pred HHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccch-hhhh----hcccccccccccccccHHH
Q 011954 142 EKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFK-LEYV----KHLPFVAGAMIDSYTTAEY 216 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-~~~~----~~~~~~~~~~~~s~~~~~~ 216 (474)
+..+.+..+||+||+|......+...+... ...|+++++|+....... ..+. ..++.++.+++.+....+.
T Consensus 99 l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 174 (406)
T 2gek_A 99 VKKWIAEGDFDVLHIHEPNAPSLSMLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRW 174 (406)
T ss_dssp HHHHHHHHCCSEEEEECCCSSSHHHHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHHH
T ss_pred HHHHHHhcCCCEEEECCccchHHHHHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHHH
Confidence 445566679999999986554432222211 236889999985432211 1111 2335556666666555554
Q ss_pred HHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccc-ccCcchHHHHHHHHHH
Q 011954 217 WKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSV-SRGKGQDLFLHSFYES 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl-~~~Kg~~~ll~a~~~l 295 (474)
+. +.++ ..++ +||||+|.+.+.+.... .+++.++++++++|++ .+.||++.+++|+.++
T Consensus 175 ~~----~~~~--~~~~-vi~~~v~~~~~~~~~~~-------------~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l 234 (406)
T 2gek_A 175 QM----EALG--SDAV-EIPNGVDVASFADAPLL-------------DGYPREGRTVLFLGRYDEPRKGMAVLLAALPKL 234 (406)
T ss_dssp HH----HHHS--SCEE-ECCCCBCHHHHHTCCCC-------------TTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHH
T ss_pred HH----HhcC--CCcE-EecCCCChhhcCCCchh-------------hhccCCCeEEEEEeeeCccccCHHHHHHHHHHH
Confidence 43 3444 4578 99999998877654311 1233456799999999 9999999999999988
Q ss_pred HHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCch
Q 011954 296 LQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGR 373 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~ 373 (474)
.+ ++++++|+|+|+|+ . +.++++++++ .++|+|+|++ +++.++|+.||++|+||.+ .|++|+
T Consensus 235 ~~-------~~~~~~l~i~G~~~-----~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~e~~~~ 298 (406)
T 2gek_A 235 VA-------RFPDVEILIVGRGD-----E-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHLG-GESFGI 298 (406)
T ss_dssp HT-------TSTTCEEEEESCSC-----H-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCCS-CCSSCH
T ss_pred HH-------HCCCeEEEEEcCCc-----H-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCCC-CCCCch
Confidence 65 55899999999996 5 7888888777 5799999987 5569999999999999853 899999
Q ss_pred HHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011954 374 ITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQR 453 (474)
Q Consensus 374 ~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 453 (474)
+++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++.+.++++++++++. .|+|+.++++
T Consensus 299 ~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~ 375 (406)
T 2gek_A 299 VLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVH-RYDWSVVSAQ 375 (406)
T ss_dssp HHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GGBHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 9999999999999999999999999899999999988 999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHhhhh
Q 011954 454 IALVLREVLQYAK 466 (474)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (474)
+.++|+++++++.
T Consensus 376 ~~~~~~~~~~~~~ 388 (406)
T 2gek_A 376 IMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987654
No 13
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=1.5e-42 Score=332.27 Aligned_cols=308 Identities=16% Similarity=0.069 Sum_probs=245.0
Q ss_pred cccCEEEEEecC-----------CC---CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeee
Q 011954 72 MKSKLVLLVSHE-----------LS---LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVL 137 (474)
Q Consensus 72 ~~~~kIl~v~~~-----------~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (474)
|++|||+++++. ++ .||+++++.+++++|.+.||+|++++........ .++.++
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~ 68 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVV 68 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEEC
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------Ccceec
Confidence 667999999987 22 2777899999999999999999999976543221 122222
Q ss_pred eh---hcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccH
Q 011954 138 SA---KGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTA 214 (474)
Q Consensus 138 ~~---~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (474)
.. ..+..+.+..+||+||+|+.....+. ......| ++++|+...... ..+.+++.|....
T Consensus 69 ~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~~~-------~~~~~~p-v~~~h~~~~~~~---------~~d~ii~~S~~~~ 131 (342)
T 2iuy_A 69 PAGEPEEIERWLRTADVDVVHDHSGGVIGPA-------GLPPGTA-FISSHHFTTRPV---------NPVGCTYSSRAQR 131 (342)
T ss_dssp SCCSHHHHHHHHHHCCCSEEEECSSSSSCST-------TCCTTCE-EEEEECSSSBCS---------CCTTEEESCHHHH
T ss_pred cCCcHHHHHHHHHhcCCCEEEECCchhhHHH-------HhhcCCC-EEEecCCCCCcc---------cceEEEEcCHHHH
Confidence 21 24556666789999999986654322 1123457 899998744321 1566666666655
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYE 294 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~ 294 (474)
+.+.+ ..++.+||||+|.+.+.+.... . .+..+|+++||+.+.||++.+++|++.
T Consensus 132 ~~~~~---------~~~~~vi~ngvd~~~~~~~~~~---------------~-~~~~~i~~vG~~~~~Kg~~~li~a~~~ 186 (342)
T 2iuy_A 132 AHCGG---------GDDAPVIPIPVDPARYRSAADQ---------------V-AKEDFLLFMGRVSPHKGALEAAAFAHA 186 (342)
T ss_dssp HHTTC---------CTTSCBCCCCBCGGGSCCSTTC---------------C-CCCSCEEEESCCCGGGTHHHHHHHHHH
T ss_pred HHHhc---------CCceEEEcCCCChhhcCccccc---------------C-CCCCEEEEEeccccccCHHHHHHHHHh
Confidence 54432 5789999999999988765321 1 345678999999999999999999986
Q ss_pred HHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC--ChHHHHhcCCEEEEcCC-------
Q 011954 295 SLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL--TVSPYLASIDVLVQNSQ------- 365 (474)
Q Consensus 295 l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~~~~~~~~adv~v~ps~------- 365 (474)
+ +++|+|+|+|+ ..+.+++++++++ ++|+|+|+++ ++.++|+.||++|+||.
T Consensus 187 ~------------~~~l~i~G~g~-----~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~ 247 (342)
T 2iuy_A 187 C------------GRRLVLAGPAW-----EPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWG 247 (342)
T ss_dssp H------------TCCEEEESCCC-----CHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTC
T ss_pred c------------CcEEEEEeCcc-----cHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccc
Confidence 5 58999999996 6788888888887 7999999874 56999999999999997
Q ss_pred --CCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee--CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 011954 366 --ARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN--GTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERV 441 (474)
Q Consensus 366 --~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 441 (474)
| .|+||++++|||+||+|||+|+.||+.|++.+ +.+|+++++ | +++++++|.++++ ++++++++
T Consensus 248 ~~~-~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~--------~~~~~~~~ 315 (342)
T 2iuy_A 248 GIW-CEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA--------SDEVRRAA 315 (342)
T ss_dssp SCC-CCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC--------HHHHHHHH
T ss_pred ccc-ccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH--------HHHHHHHH
Confidence 4 79999999999999999999999999999998 889999999 8 9999999999986 67889999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhh
Q 011954 442 KDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
.++|+|+.+++++.++|++++++
T Consensus 316 ~~~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 316 VRLWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHHHBHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHcc
Confidence 88899999999999999999875
No 14
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1.1e-41 Score=352.33 Aligned_cols=375 Identities=16% Similarity=0.196 Sum_probs=261.1
Q ss_pred ccCEEEEEecCCC---------C-CCh-hHHHHH--------HHHHHHhcCcEEE----EEeCCCCCCchh-hhhhcccc
Q 011954 73 KSKLVLLVSHELS---------L-SGG-PLLLME--------LAFLLRGVGAEVV----WITNQKPNEPDE-VIYSLEHK 128 (474)
Q Consensus 73 ~~~kIl~v~~~~~---------~-gG~-~~~~~~--------l~~~L~~~G~~V~----v~~~~~~~~~~~-~~~~~~~~ 128 (474)
|.++|++++.... + .|| ..++.+ |++.|.++||+|+ |+|...+..... ........
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 4689999998753 3 344 688874 6667778999876 898543322111 00001111
Q ss_pred hhccceeeeehh---------------------------cHHHHhh--hcCCCEEEEcccchhhHHhHHhhhcccccccc
Q 011954 129 MLDRGVQVLSAK---------------------------GEKAINT--ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPK 179 (474)
Q Consensus 129 ~~~~~~~~~~~~---------------------------~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (474)
-...++.+++.+ ....+.. ..+||+||+|....+.... .+... ...|
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~-llar~---~gvP 432 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS-LLAHK---LGVT 432 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHH-HHHHH---HTCC
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHH-HHHHH---cCCC
Confidence 001133332111 0111111 2479999999755444322 22221 2458
Q ss_pred eeeeeeccccccch-------h---h---------hhhcccccccccccccccHHHHHHh---HHHH-------------
Q 011954 180 VLWWIHEMRGHYFK-------L---E---------YVKHLPFVAGAMIDSYTTAEYWKNR---TRER------------- 224 (474)
Q Consensus 180 ~v~~~h~~~~~~~~-------~---~---------~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~------------- 224 (474)
++++.|........ . . ....+..++.+++.|....+.+.+. +...
T Consensus 433 ~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~ 512 (816)
T 3s28_A 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVH 512 (816)
T ss_dssp EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEE
T ss_pred EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhccc
Confidence 89999975321110 0 0 0113456666777666555421110 0000
Q ss_pred -hcCCCCCeEEEeCCCCccccchhhhhHH------HHH-----hHHHHHHhcCC--CCCCEEEEEecccccCcchHHHHH
Q 011954 225 -LGIRMPETYVVHLGNSKDLMDIAEDSVA------RRV-----LREHVRESLGV--RDDDLLFAIINSVSRGKGQDLFLH 290 (474)
Q Consensus 225 -~~~~~~ki~vi~ngvd~~~~~~~~~~~~------~~~-----~~~~~r~~~~~--~~~~~~i~~vgrl~~~Kg~~~ll~ 290 (474)
.+...+++.|||||+|.+.|.+...... ... .....++.+|+ +.++++|+++||+.+.||++.+++
T Consensus 513 gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIe 592 (816)
T 3s28_A 513 GIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVE 592 (816)
T ss_dssp SCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHH
T ss_pred ccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHH
Confidence 0122348999999999999977542210 000 00123455666 677899999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCc------CchHHHHHHHHHHHcCCCCeEEEecCC------CChHHHHh-cC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNA------QTKFETELRNFVAEKKIQDHVHFVNKT------LTVSPYLA-SI 357 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~------~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~~~~~~~-~a 357 (474)
|+.++.+. .++++|+|+|+|++. ..++.+.++++++++++.++|.|+|++ +++..+|+ .+
T Consensus 593 A~~~L~~~-------~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa 665 (816)
T 3s28_A 593 WYGKNTRL-------RELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK 665 (816)
T ss_dssp HHHHCHHH-------HHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhh-------CCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcC
Confidence 99988652 268999999998621 112578899999999999999999965 44778887 68
Q ss_pred CEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHh----hCHHHHHHH
Q 011954 358 DVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA----THVERRLTM 433 (474)
Q Consensus 358 dv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~~~~ 433 (474)
|++|+||. .|+||++++||||||+|||+|+.||+.|++.++.+|++++++| +++++++|.+++ .|++.+++|
T Consensus 666 DvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D--~e~LA~aI~~lL~~Ll~d~~~~~~m 741 (816)
T 3s28_A 666 GAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYH--GDQAADTLADFFTKCKEDPSHWDEI 741 (816)
T ss_dssp CEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTS--HHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred eEEEECCC--ccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCC--HHHHHHHHHHHHHHhccCHHHHHHH
Confidence 99999999 8999999999999999999999999999999999999999999 999999997766 899999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011954 434 GKKGYERVKDRFLEHHMSQRIALVLREVL 462 (474)
Q Consensus 434 ~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 462 (474)
++++++++.++|||+.++++++++|+..-
T Consensus 742 ~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 742 SKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999764
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=8e-39 Score=312.18 Aligned_cols=340 Identities=11% Similarity=0.088 Sum_probs=222.6
Q ss_pred ccCEEEEEecCCCCC---ChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhccc----chhcc-c--eeeeehh-c
Q 011954 73 KSKLVLLVSHELSLS---GGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEH----KMLDR-G--VQVLSAK-G 141 (474)
Q Consensus 73 ~~~kIl~v~~~~~~g---G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~----~~~~~-~--~~~~~~~-~ 141 (474)
.+|||+++++.+.++ ||.+.+.+++++|.++||+|+|++....... .....+.. .+... . ..+.... .
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNP-KDLQSFKSFKYVMPEEDKDFALQIVPFNDR 123 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCH-HHHGGGTTSEECCTTCCCCCSEEEEECSCC
T ss_pred CCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCCh-HHHHhhhccceeeccCCccccceeeecccc
Confidence 468999999998885 7777899999999999999999997543211 11110100 00000 0 0111111 0
Q ss_pred HHHHhhhcCCCEEEEcccchhhHHhHHhhh---cccccccceeeeeeccccccchhhh-----hhcccccc--ccccccc
Q 011954 142 EKAINTALNADLVVLNTAVAGKWLDGVLKD---KVSQVLPKVLWWIHEMRGHYFKLEY-----VKHLPFVA--GAMIDSY 211 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~-----~~~~~~~~--~~~~~s~ 211 (474)
........++|+||++....+......... .......+.++.+|+....+..... ...+...+ .++++|.
T Consensus 124 ~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 203 (413)
T 2x0d_A 124 YNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSE 203 (413)
T ss_dssp TTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEESH
T ss_pred ccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcCH
Confidence 111112357999999975444333322110 0000123555666665433221111 11222222 1333444
Q ss_pred ccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccc-ccCcchHHHHH
Q 011954 212 TTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSV-SRGKGQDLFLH 290 (474)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl-~~~Kg~~~ll~ 290 (474)
. .++.+.+ .|++..++.+++||+|.+.|.+.. .+ ..+...++++||+ .+.||++.+++
T Consensus 204 ~----~~~~l~~-~g~~~~~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~Kg~~~li~ 262 (413)
T 2x0d_A 204 L----LKQYFNN-KGYNFTDEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRNAFTLIVE 262 (413)
T ss_dssp H----HHHHHHH-HTCCCSEEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGGCHHHHHH
T ss_pred H----HHHHHHH-cCCCCCceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecCchhccCHHHHHH
Confidence 4 4444433 466656799999999987654321 11 2345567789996 68899999999
Q ss_pred HHHHHHHHHHHhccCCC---cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCC
Q 011954 291 SFYESLQLIREKKLQVP---SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~---~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~ 365 (474)
|++.+.+ ++| +++|+|+|+|+.. .++++.++|+|+|++ +++.++|+.||++|+||.
T Consensus 263 A~~~l~~-------~~~~~~~~~l~ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~ 323 (413)
T 2x0d_A 263 ALKIFVQ-------KYDRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMI 323 (413)
T ss_dssp HHHHHHH-------HCTTGGGCEEEEEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCS
T ss_pred HHHHHHH-------hCCCCCceEEEEEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecC
Confidence 9998865 235 4899999998621 346777899999985 789999999999999998
Q ss_pred CCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 011954 366 ARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRF 445 (474)
Q Consensus 366 ~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~f 445 (474)
.|+||++++||||||+|||++ .+|..|++.++.+|++++++| +++|+++|.++++|++++++ ++++.+ +.|
T Consensus 324 --~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~---~~~~~~-~~~ 394 (413)
T 2x0d_A 324 --SPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV---DKKESS-NMM 394 (413)
T ss_dssp --SSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC----------CCB-SCG
T ss_pred --CCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---hHHHHH-HhC
Confidence 899999999999999999995 567789999999999999999 99999999999998887776 566555 469
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 011954 446 LEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 446 s~~~~~~~~~~~~~~~~~ 463 (474)
+|+...++ .+.|+++++
T Consensus 395 ~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 395 FYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp GGCCCC----TTHHHHHT
T ss_pred CHHHHHHH-HHHHHHHHh
Confidence 99999888 777777754
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=1.8e-35 Score=302.72 Aligned_cols=333 Identities=11% Similarity=0.031 Sum_probs=242.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHH--HHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeee-----ehhcHHH
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFL--LRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVL-----SAKGEKA 144 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 144 (474)
.++|||+++++.+..||+++++.++++. +.+.||+|++++...+... .... .+...+ .+. ....+..
T Consensus 203 ~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~~~l~~ 276 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGS-TLRT----RLAQAS-TLHDVTALGHLATAK 276 (568)
T ss_dssp SSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSC-HHHH----HHHHTS-EEEECTTCCHHHHHH
T ss_pred CCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCcc-HHHH----HHHhcC-eEEECCCCCHHHHHH
Confidence 3478999999999888889999999999 7889999999996432111 1111 111111 111 2234556
Q ss_pred HhhhcCCCEEEEcccchhh-HHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHH
Q 011954 145 INTALNADLVVLNTAVAGK-WLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRE 223 (474)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (474)
+.+..+|||||.++..... .+...... ..+++.+.|+...... .. ...+...+.+++.+.....
T Consensus 277 ~i~~~~~Div~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~d~~i~~s~~~~~-------- 341 (568)
T 2vsy_A 277 HIRHHGIDLLFDLRGWGGGGRPEVFALR-----PAPVQVNWLAYPGTSG-AP-WMDYVLGDAFALPPALEPF-------- 341 (568)
T ss_dssp HHHHTTCSEEEECSSCTTCSSCHHHHTC-----CSSEEEEESSSSSCCC-CT-TCCEEEECTTTSCTTTGGG--------
T ss_pred HHHhCCCCEEEECCCCCCcchHHHHhcC-----CCceeEeeecCCcccC-CC-CceEEEECCCcCCcccccC--------
Confidence 6677899999987543211 11111111 1345555554311111 00 0011223444444443211
Q ss_pred HhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhc
Q 011954 224 RLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKK 303 (474)
Q Consensus 224 ~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (474)
++ +++.+|||........+... +...|+++|++++.+++ ++||+.+ ||++.+++++.++.+
T Consensus 342 -~~---~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~v~-~~g~~~~-K~~~~li~a~~~l~~------ 402 (568)
T 2vsy_A 342 -YS---EHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGVVL-CCFNNSY-KLNPQSMARMLAVLR------ 402 (568)
T ss_dssp -CS---SEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSCEE-EECCCGG-GCCHHHHHHHHHHHH------
T ss_pred -Cc---ceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCEEE-EeCCccc-cCCHHHHHHHHHHHH------
Confidence 22 67999999654332111100 12357778887776554 8999999 999999999999866
Q ss_pred cCCCcEEEEEEc-CCCCcCchHHHHHHHHHHHcCCC-CeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHH
Q 011954 304 LQVPSMHAVVVG-SDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 304 ~~~~~~~l~i~G-~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm 379 (474)
+.|+++|+|+| +|+ ..+.+++.++++|+. ++|+|+|++ +++..+|+.+|++|+||. . |||++++|||
T Consensus 403 -~~~~~~l~i~G~~g~-----~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~-~~g~~~lEAm 473 (568)
T 2vsy_A 403 -EVPDSVLWLLSGPGE-----ADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHP--Y-NAHTTASDAL 473 (568)
T ss_dssp -HCTTCEEEEECCSTT-----HHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHHH
T ss_pred -hCCCcEEEEecCCHH-----HHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCC--C-CCcHHHHHHH
Confidence 45899999999 775 789999999999998 999999997 489999999999999998 7 9999999999
Q ss_pred hcCCCEEE-------cCCC-------CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH--HH
Q 011954 380 AFQLPVLG-------TAAG-------GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERV--KD 443 (474)
Q Consensus 380 a~G~PvI~-------s~~~-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~--~~ 443 (474)
+||+|||+ |++| |++|++.+ | +++++++|.++++|++.+++|++++++.+ .+
T Consensus 474 a~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 541 (568)
T 2vsy_A 474 WTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------D--DAAFVAKAVALASDPAALTALHARVDVLRRASG 541 (568)
T ss_dssp HTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSS
T ss_pred hCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------C--HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCC
Confidence 99999999 9999 99998844 5 89999999999999999999999999998 67
Q ss_pred hcCHHHHHHHHHHHHHHHHhhh
Q 011954 444 RFLEHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~~~~~ 465 (474)
.|+|+.++++++++|++++++.
T Consensus 542 ~f~~~~~~~~~~~~y~~~~~~~ 563 (568)
T 2vsy_A 542 VFHMDGFADDFGALLQALARRH 563 (568)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998753
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=2.5e-34 Score=277.64 Aligned_cols=320 Identities=15% Similarity=0.068 Sum_probs=227.1
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee----------------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS---------------- 138 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 138 (474)
|||++++. +.||.+..+..|+++|.++||+|++++......... +...++.+..
T Consensus 7 mkIl~~~~--~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T 1f0k_A 7 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADL--------VPKHGIEIDFIRISGLRGKGIKALIA 76 (364)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHH--------GGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred cEEEEEeC--CCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhh--------ccccCCceEEecCCccCcCccHHHHH
Confidence 89999973 346777889999999999999999999764321110 0111111110
Q ss_pred --------hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccc
Q 011954 139 --------AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDS 210 (474)
Q Consensus 139 --------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (474)
......+.+..+||+||+++............ . ...|++.+.|+...... .....+..+.+++.+
T Consensus 77 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~-~---~~~p~v~~~~~~~~~~~---~~~~~~~~d~v~~~~ 149 (364)
T 1f0k_A 77 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAW-S---LGIPVVLHEQNGIAGLT---NKWLAKIATKVMQAF 149 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHH-H---TTCCEEEEECSSSCCHH---HHHHTTTCSEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHH-H---cCCCEEEEecCCCCcHH---HHHHHHhCCEEEecC
Confidence 11233445567999999997653332211111 1 23577777886432211 111223444444433
Q ss_pred cccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCE-EEEEecccccCcchHHHH
Q 011954 211 YTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDL-LFAIINSVSRGKGQDLFL 289 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vgrl~~~Kg~~~ll 289 (474)
... ++ ++.+++||++.+.+.+.. .++.++++.+.. ++++.|++.+.||.+.++
T Consensus 150 ~~~-------------~~--~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~li 203 (364)
T 1f0k_A 150 PGA-------------FP--NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTMP 203 (364)
T ss_dssp TTS-------------SS--SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHHH
T ss_pred hhh-------------cC--CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHHH
Confidence 221 12 688999999988765421 134566666655 555667999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEE-EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCC
Q 011954 290 HSFYESLQLIREKKLQVPSMH-AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~-l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~ 368 (474)
+|+..+. .+++ ++++|+++ .+.+++++++++++ +|+|+|+++++.++|+.||++|+|| .
T Consensus 204 ~a~~~l~----------~~~~~l~i~G~~~------~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~s---g 263 (364)
T 1f0k_A 204 QVAAKLG----------DSVTIWHQSGKGS------QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRS---G 263 (364)
T ss_dssp HHHHHHG----------GGEEEEEECCTTC------HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECC---C
T ss_pred HHHHHhc----------CCcEEEEEcCCch------HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECC---c
Confidence 9998872 1677 57789884 47788888888874 7999999999999999999999998 3
Q ss_pred CCCchHHHHHHhcCCCEEEcCCCCcc--------eeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 011954 369 ECFGRITIEAMAFQLPVLGTAAGGTM--------EIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYER 440 (474)
Q Consensus 369 E~~~~~~~EAma~G~PvI~s~~~g~~--------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~ 440 (474)
|++++|||+||+|||+++.+|.+ +++.++ .|++++++|.++++++++|.++ |++.+++|++++++.
T Consensus 264 ---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~ 337 (364)
T 1f0k_A 264 ---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAA 337 (364)
T ss_dssp ---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 99999999999999999999874 455444 6999988654479999999998 999999999999988
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 441 VKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
+. .|+|++++++++++|++.-.+
T Consensus 338 ~~-~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 338 SI-PDATERVANEVSRVARALEHH 360 (364)
T ss_dssp CC-TTHHHHHHHHHHHHHTTC---
T ss_pred hc-cCHHHHHHHHHHHHHHHHHhh
Confidence 75 699999999999999876543
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=2.7e-33 Score=273.40 Aligned_cols=239 Identities=15% Similarity=0.154 Sum_probs=178.5
Q ss_pred CCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccc-c------cchhhhhhcccccccccccccccHHHHHHhHH
Q 011954 150 NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRG-H------YFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~-~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
++|+||.++...+.+...... ...|++.+.|+... . .........++.++.+++.|....+.+.+
T Consensus 124 ~~DvIh~~~~~~~~~~~~~~~-----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~--- 195 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFIELAKR-----VNPAAKLVYRASDGLSTINVASYIEREFDRVAPTLDVIALVSPAMAAEVVS--- 195 (406)
T ss_dssp HCSEEEEESSGGGGGHHHHHH-----HCTTSEEEEEESSCHHHHTCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSC---
T ss_pred CCCEEEECCchHHHHHHHHHH-----hCCCEEEEEeccchhhcccccHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh---
Confidence 799999655443331111111 23577788886432 1 01112334456777788887777665432
Q ss_pred HHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHh
Q 011954 223 ERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREK 302 (474)
Q Consensus 223 ~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (474)
++ ++.|||||+|.+.|.+.... -.+++++++|+||+.+.||+ +++ +.+
T Consensus 196 --~~----~i~vipngvd~~~f~~~~~~---------------~~~~~~~i~~vGrl~~~Kg~---~~~---l~~----- 243 (406)
T 2hy7_A 196 --RD----NVFHVGHGVDHNLDQLGDPS---------------PYAEGIHAVAVGSMLFDPEF---FVV---ASK----- 243 (406)
T ss_dssp --ST----TEEECCCCBCTTHHHHHCSC---------------SCCSSEEEEEECCTTBCHHH---HHH---HHH-----
T ss_pred --cC----CEEEEcCCcChHhcCccccc---------------ccCCCcEEEEEeccccccCH---HHH---HHH-----
Confidence 12 89999999999887543210 01233889999999999998 333 322
Q ss_pred ccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHH-
Q 011954 303 KLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAM- 379 (474)
Q Consensus 303 ~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm- 379 (474)
+.++++|+|+|+|+ ++++++.++|+|+|++ +++.++|+.||++|+||. .|+||++++|||
T Consensus 244 --~~~~~~l~ivG~g~-------------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~ 306 (406)
T 2hy7_A 244 --AFPQVTFHVIGSGM-------------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYA--SEQVPVYLADSSM 306 (406)
T ss_dssp --HCTTEEEEEESCSS-------------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCH
T ss_pred --hCCCeEEEEEeCch-------------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCC--cccCchHHHHHHH
Confidence 24899999999983 5667888999999986 689999999999999999 899999999999
Q ss_pred ------hcCCCEEEcCCCCcceeeeeCCceee-ecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011954 380 ------AFQLPVLGTAAGGTMEIVVNGTTGLL-HPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQ 452 (474)
Q Consensus 380 ------a~G~PvI~s~~~g~~e~v~~~~~G~l-~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 452 (474)
|||+|||+|+. +.++.+|++ ++++| +++|+++|.++++|++ + ...++|+|+.+++
T Consensus 307 Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~~~---------~-~~~~~~sw~~~a~ 368 (406)
T 2hy7_A 307 KLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGN--ADSVIAAITQALEAPR---------V-RYRQCLNWSDTTD 368 (406)
T ss_dssp HHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTC--HHHHHHHHHHHHHCCC---------C-CCSCCCBHHHHHH
T ss_pred HHHHHhhCCCcEEEehh------cccCcceEEEeCCCC--HHHHHHHHHHHHhCcc---------h-hhhhcCCHHHHHH
Confidence 99999999997 567889999 99999 9999999999999876 1 2346799999999
Q ss_pred HHHHH--HHHHHh
Q 011954 453 RIALV--LREVLQ 463 (474)
Q Consensus 453 ~~~~~--~~~~~~ 463 (474)
+++++ |+++..
T Consensus 369 ~~~~~~~y~~~~~ 381 (406)
T 2hy7_A 369 RVLDPRAYPETRL 381 (406)
T ss_dssp HHHCGGGSGGGBS
T ss_pred HHHHhhcccccCc
Confidence 99999 887654
No 19
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.98 E-value=4e-31 Score=261.16 Aligned_cols=305 Identities=14% Similarity=0.074 Sum_probs=208.1
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccc--------cccc-hhh---------------------hhh
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMR--------GHYF-KLE---------------------YVK 198 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~--------~~~~-~~~---------------------~~~ 198 (474)
..|||+|+|+...+..+..+... . ...++++++|... +... ... .+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~-~--~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR-R--IDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT-T--CSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh-C--CCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 45999999987776654443322 2 2468999999873 2110 000 011
Q ss_pred cccccccccccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhH-HHHHhHHHH----HH----hcCCC-C
Q 011954 199 HLPFVAGAMIDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSV-ARRVLREHV----RE----SLGVR-D 268 (474)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~-~~~~~~~~~----r~----~~~~~-~ 268 (474)
....++.++++|..+.+... ..++.+.+.+ ||||||.+.|.+..... .+...+.++ +. .++++ +
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~----~Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAE----HLLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHH----HHTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHhCCEEEECCHHHHHHHH----HHhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 12345556666666555444 3456555543 99999999998752211 112223333 23 22454 3
Q ss_pred CCEEEEEecccc-cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCc-------------------------
Q 011954 269 DDLLFAIINSVS-RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQT------------------------- 322 (474)
Q Consensus 269 ~~~~i~~vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~------------------------- 322 (474)
+.+++..+||++ .+||+|++++|+.+|...++..+.+..-+.|+|+..+.....
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 446676789999 689999999999999888776544445678888887633210
Q ss_pred -----------------------------------------------------------hHHHHHHHHHHHcCCCCe---
Q 011954 323 -----------------------------------------------------------KFETELRNFVAEKKIQDH--- 340 (474)
Q Consensus 323 -----------------------------------------------------------~~~~~l~~~~~~~~l~~~--- 340 (474)
+..+.+...++++++.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 011223344456666655
Q ss_pred ---EEEec-CC--------CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeC-------C
Q 011954 341 ---VHFVN-KT--------LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNG-------T 401 (474)
Q Consensus 341 ---v~~~g-~~--------~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~-------~ 401 (474)
|+|++ +. .++.++|+.||++|+||. +|+||++++||||||+|||+|+.||++|+|.++ .
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~ 568 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKD 568 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHH
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCC
Confidence 66765 32 368999999999999999 999999999999999999999999999998765 3
Q ss_pred ceeeecCCC-CChHHHHHHHHHHh----h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011954 402 TGLLHPTGK-EGVTPLANNIVKLA----T-HVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYA 465 (474)
Q Consensus 402 ~G~l~~~~d-~~~~~la~~i~~ll----~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 465 (474)
+|+++++.+ .++++++++|.+++ + +++.+..|++++++.+ +.|+|++++++|+++|+.++.+.
T Consensus 569 tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 569 YGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp TTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhc
Confidence 799885421 12565555555444 3 7888999999988766 46999999999999999998654
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.98 E-value=1.9e-32 Score=265.54 Aligned_cols=345 Identities=11% Similarity=0.069 Sum_probs=220.0
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhc-C-cEEEEEeCCCCCCchhhh---hhccc--chhc--cceeee----
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-AEVVWITNQKPNEPDEVI---YSLEH--KMLD--RGVQVL---- 137 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~~~~---~~~~~--~~~~--~~~~~~---- 137 (474)
++.+|||++++...+.. .....++++|.+. | ++|.+++...+....... ..+.. .+.. .+....
T Consensus 5 m~~~mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (375)
T 3beo_A 5 MTERLKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITT 81 (375)
T ss_dssp CSSCEEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHH
T ss_pred CCcCceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHHHH
Confidence 34568999998643222 2456788888876 4 888777654332111100 00000 0000 000000
Q ss_pred -ehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc----hhh-hhhcc-cccccccccc
Q 011954 138 -SAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF----KLE-YVKHL-PFVAGAMIDS 210 (474)
Q Consensus 138 -~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~----~~~-~~~~~-~~~~~~~~~s 210 (474)
.......+.+..+||+||+|+.....+........ ...|++.+.|+...... ... ....+ +..+.+++.+
T Consensus 82 ~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 158 (375)
T 3beo_A 82 RGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFY---NQIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSPT 158 (375)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESS
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCChhHhhhhHHhhhhheeeCCC
Confidence 01124455667899999998753222221111111 23467766665421110 011 11111 2245555555
Q ss_pred cccHHHHHHhHHHHhcCCCCCeEEEeCC-CCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccC-cchHHH
Q 011954 211 YTTAEYWKNRTRERLGIRMPETYVVHLG-NSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRG-KGQDLF 288 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ki~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~-Kg~~~l 288 (474)
....+.+ . .+|++.+++.+|+|| +|...+.+.... +.++++++ ++++++++++||+.+. ||++.+
T Consensus 159 ~~~~~~~----~-~~g~~~~~i~vi~n~~~d~~~~~~~~~~------~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~l 225 (375)
T 3beo_A 159 AKSATNL----Q-KENKDESRIFITGNTAIDALKTTVKETY------SHPVLEKL--GNNRLVLMTAHRRENLGEPMRNM 225 (375)
T ss_dssp HHHHHHH----H-HTTCCGGGEEECCCHHHHHHHHHCCSSC------CCHHHHTT--TTSEEEEEECCCGGGTTHHHHHH
T ss_pred HHHHHHH----H-HcCCCcccEEEECChhHhhhhhhhhhhh------hHHHHHhc--cCCCeEEEEecccccchhHHHHH
Confidence 5544433 2 357777899999999 777655432100 12344444 3556778899999875 999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC
Q 011954 289 LHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA 366 (474)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~ 366 (474)
++|+.++.+ ++|++++++ |.|+. .+..+.+++++ +..++|+|+|+. .++..+|+.||++|+||
T Consensus 226 i~a~~~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-- 290 (375)
T 3beo_A 226 FRAIKRLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-- 290 (375)
T ss_dssp HHHHHHHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTCSEEEECC--
T ss_pred HHHHHHHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhCcEEEECC--
Confidence 999998865 347888655 65541 11233333332 333689998764 48999999999999987
Q ss_pred CCCCCchHHHHHHhcCCCEEEcCC-CCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 011954 367 RGECFGRITIEAMAFQLPVLGTAA-GGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRF 445 (474)
Q Consensus 367 ~~E~~~~~~~EAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~f 445 (474)
|.+++|||+||+|||+++. ||.+|++.++ +|+++++ | +++|+++|.++++|++.+++|+++++++. +.|
T Consensus 291 -----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~-~~~ 360 (375)
T 3beo_A 291 -----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAHDKMSKASNPYG-DGR 360 (375)
T ss_dssp -----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHCCCCCTTC-CSC
T ss_pred -----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhHhhhhhcCCCCC-CCc
Confidence 5679999999999999964 8999999777 9999986 6 99999999999999999999999998876 569
Q ss_pred CHHHHHHHHHHHHH
Q 011954 446 LEHHMSQRIALVLR 459 (474)
Q Consensus 446 s~~~~~~~~~~~~~ 459 (474)
+|+++++.+.++++
T Consensus 361 ~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 361 ASERIVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988763
No 21
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.97 E-value=8.1e-32 Score=261.95 Aligned_cols=353 Identities=13% Similarity=0.057 Sum_probs=226.9
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCc-EEEEEeCCCCCCc-hhhhh--hccc--chhc--cceeee-----ehhc
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGA-EVVWITNQKPNEP-DEVIY--SLEH--KMLD--RGVQVL-----SAKG 141 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~-~~~~~--~~~~--~~~~--~~~~~~-----~~~~ 141 (474)
|||++++... .+ ......++++|+++|+ ++.++........ ..... .+.. .+.. .+.... ....
T Consensus 1 mkIl~v~~~~--~~-~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (384)
T 1vgv_A 1 MKVLTVFGTR--PE-AIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEG 77 (384)
T ss_dssp CEEEEEECSH--HH-HHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHH
T ss_pred CeEEEEeccc--HH-HHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHHH
Confidence 7899987542 11 1346789999999994 8877654322111 11100 0000 0000 000000 0123
Q ss_pred HHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc----chhhhh-hc-ccccccccccccccHH
Q 011954 142 EKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY----FKLEYV-KH-LPFVAGAMIDSYTTAE 215 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----~~~~~~-~~-~~~~~~~~~~s~~~~~ 215 (474)
...+.+..+||+||+|+.....+....... . ...|++++.|+..... +..... .. .+..+.+++.+....+
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~-~--~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 154 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLATSLAAF-Y--QRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQ 154 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHHHHHHHH-T--TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHH-H--HCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHHHHH
Confidence 445566789999999975222222222221 1 2357777777653211 011111 11 1335555555555444
Q ss_pred HHHHhHHHHhcCCCCCeEEEeCCC-CccccchhhhhHHHHHhHHHHHHhcC-CCC-CCEEEEEecccccC-cchHHHHHH
Q 011954 216 YWKNRTRERLGIRMPETYVVHLGN-SKDLMDIAEDSVARRVLREHVRESLG-VRD-DDLLFAIINSVSRG-KGQDLFLHS 291 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~i~~vgrl~~~-Kg~~~ll~a 291 (474)
.+. .+|++.+++.+++||+ |...+.+.... .....+.++++++| ++. ++++++++||+.+. ||++.+++|
T Consensus 155 ~l~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a 228 (384)
T 1vgv_A 155 NLL-----RENVADSRIFITGNTVIDALLWVRDQVM-SSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHA 228 (384)
T ss_dssp HHH-----HTTCCGGGEEECCCHHHHHHHHHHHHTT-TCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHH
T ss_pred HHH-----HcCCChhhEEEeCChHHHHHHhhhhccc-cchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHH
Confidence 332 4677778899999995 33222111000 00001235778888 744 45688899999876 999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEE-cCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCC
Q 011954 292 FYESLQLIREKKLQVPSMHAVVV-GSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARG 368 (474)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~ 368 (474)
+.++.+ +.++++|+++ |+++ +..+.+++++.. .++|+|+|+. +++.++|+.||++|+||
T Consensus 229 ~~~l~~-------~~~~~~l~i~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~~S---- 290 (384)
T 1vgv_A 229 LADIAT-------THQDIQIVYPVHLNP----NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILTDS---- 290 (384)
T ss_dssp HHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEESS----
T ss_pred HHHHHh-------hCCCeEEEEEcCCCH----HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEECC----
Confidence 998865 3478999886 4332 245556555432 3689997643 68999999999999998
Q ss_pred CCCchHHHHHHhcCCCEEEcCC-CCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 011954 369 ECFGRITIEAMAFQLPVLGTAA-GGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLE 447 (474)
Q Consensus 369 E~~~~~~~EAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~ 447 (474)
|.+++|||+||+|||+++. ||.+|++.++ +|+++++ | +++|+++|.++++|++.+++|+++++++. +.|+|
T Consensus 291 ---g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~~~~~-~~~~~ 362 (384)
T 1vgv_A 291 ---GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMSRAHNPYG-DGQAC 362 (384)
T ss_dssp ---STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHHSSCCTTC-CSCHH
T ss_pred ---cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhhhccCCCc-CCCHH
Confidence 3348999999999999986 8999999877 9999987 6 99999999999999999999999998775 56999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011954 448 HHMSQRIALVLREVLQYA 465 (474)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (474)
+++++.+.++|+++....
T Consensus 363 ~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 363 SRILEALKNNRISLGSHH 380 (384)
T ss_dssp HHHHHHHHHTCCCC----
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 999999999888876653
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.97 E-value=1.8e-30 Score=256.08 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=171.8
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS 308 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (474)
..++.|||||||.+.|.+......... ..++|++++ ++.+|+++||+.+.||++.+++|++++.+...+. ..+
T Consensus 218 ~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~---~~~ 290 (482)
T 1uqt_A 218 AFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH---HGK 290 (482)
T ss_dssp EEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGG---TTT
T ss_pred EEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccc---cCc
Confidence 357999999999998865422111111 356788886 5688999999999999999999999987743221 125
Q ss_pred EEEEEEcCCCCcCch----HHHHHHHHHHHcC----CC--CeEEE-ecC--CCChHHHHhcCCEEEEcCCCCCCCCchHH
Q 011954 309 MHAVVVGSDMNAQTK----FETELRNFVAEKK----IQ--DHVHF-VNK--TLTVSPYLASIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~----~~~~l~~~~~~~~----l~--~~v~~-~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~ 375 (474)
+.|+++|++...+.+ ..+++++++.+++ .. ..|+| .|+ .+++..+|+.||+||+||. .||||+++
T Consensus 291 v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~--~EGfgLv~ 368 (482)
T 1uqt_A 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVA 368 (482)
T ss_dssp EEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCS--SBSCCHHH
T ss_pred EEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCC--cccCCchH
Confidence 889999974322222 3455666655432 21 13665 464 4789999999999999999 99999999
Q ss_pred HHHHhcCC-----CEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 376 IEAMAFQL-----PVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 376 ~EAma~G~-----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
+||||||+ |+|+|+.+|..+.+ . +|+++++.| +++++++|.++++ +++.++++++++++++.+ |||+.
T Consensus 369 lEAmA~g~~~~~gpvV~S~~~G~~~~l--~-~g~lv~p~d--~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~-~s~~~ 442 (482)
T 1uqt_A 369 KEYVAAQDPANPGVLVLSQFAGAANEL--T-SALIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIVK-NDINH 442 (482)
T ss_dssp HHHHHHSCTTSCCEEEEETTBGGGGTC--T-TSEEECTTC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCCCHHHh--C-CeEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCHHH
Confidence 99999997 89999988887777 2 899999999 9999999999998 577899999999999876 99999
Q ss_pred HHHHHHHHHHHH
Q 011954 450 MSQRIALVLREV 461 (474)
Q Consensus 450 ~~~~~~~~~~~~ 461 (474)
+++++++.|+++
T Consensus 443 ~a~~~l~~l~~~ 454 (482)
T 1uqt_A 443 WQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999999887
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=9.4e-31 Score=230.29 Aligned_cols=190 Identities=22% Similarity=0.303 Sum_probs=164.4
Q ss_pred EeCCCCccccc--hhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc-cCcchHHHHHHHHHHH--HHHHHhccCCCcE
Q 011954 235 VHLGNSKDLMD--IAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS-RGKGQDLFLHSFYESL--QLIREKKLQVPSM 309 (474)
Q Consensus 235 i~ngvd~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~-~~Kg~~~ll~a~~~l~--~~~~~~~~~~~~~ 309 (474)
||||+|.+.|. +.... ....+..+|++++++++ .+|+++|++. +.||++.+++++..+. + +++++
T Consensus 2 ipngvd~~~f~~~~~~~~--~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGS--RDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCSC--HHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhccccccccc--hhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 79999999998 65321 11124678999999754 5889999999 9999999999999885 4 34799
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEE-ecCCC--ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHF-VNKTL--TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~--~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
+|+|+|++++ ++.+.+++++++++ +|+| +|+++ ++..+|+.||++|+||. .|++|++++|||+||+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999999741 26788899999887 8999 99875 89999999999999999 8999999999999999999
Q ss_pred EcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcC
Q 011954 387 GTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVERRLTMGKKGYERVKDRFL 446 (474)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~fs 446 (474)
+++.++..|++ ++.+|++++++| +++++++|.++++ |++.+++|++++++++.+ ||
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 999999999988 9999999999999 999999999999999988 86
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.96 E-value=5.5e-29 Score=212.06 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=139.5
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT-- 347 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-- 347 (474)
+++|+++||+.+.||++.+++|+..+. +.++++|+|+|+|+ ..+.++++++++++ +++| |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKGP-----DEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCST-----THHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCCc-----cHHHHHHHHHHcCC--eEEE-eecCH
Confidence 578999999999999999999998873 23799999999986 67899999999987 8999 985
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCC-CEEE-cCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQL-PVLG-TAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~-PvI~-s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+++..+|+.||++|+||. .|+||++++|||+||+ |||+ ++.|+..|++.++ +.+++++| +++++++|.++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVIANSPLSATRQFALDE--RSLFEPNN--AKDLSAKIDWWLE 139 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSG--GGEECTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCC--ceEEcCCC--HHHHHHHHHHHHh
Confidence 789999999999999999 8999999999999998 9999 5688899999664 45888888 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011954 426 HVERRLTMGKKGYERVKDRFLEHHMSQR 453 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 453 (474)
|++.+++|++++++++ ++|+|+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 140 NKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp CHHHHHHHHHHHHHHH-HHHC-------
T ss_pred CHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 9999999999999988 67999998764
No 25
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.96 E-value=7.1e-29 Score=239.12 Aligned_cols=312 Identities=9% Similarity=0.021 Sum_probs=210.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchh--ccceeeeehhcHHHHhhhcCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKML--DRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D 152 (474)
.+|.+.+.. .|..+.+..|+++|.+.| +|.+.+..... ......+...+. .. .++-......++.+..+||
T Consensus 41 ~~iwih~~s---~G~~~~~~~L~~~L~~~~-~v~v~~~~~~~--~~~~~~~~~~v~~~~~-~p~~~~~~l~~~l~~~~pD 113 (374)
T 2xci_A 41 GALWVHTAS---IGEFNTFLPILKELKREH-RILLTYFSPRA--REYLKTKSDFYDCLHP-LPLDNPFSVKRFEELSKPK 113 (374)
T ss_dssp TCEEEECSS---HHHHHHHHHHHHHHHHHS-CEEEEESCGGG--HHHHHTTGGGCSEEEE-CCCSSHHHHHHHHHHHCCS
T ss_pred CCEEEEcCC---HHHHHHHHHHHHHHHhcC-CEEEEEcCCcH--HHHHHHhcccccceeE-CCCCCHHHHHHHHHHhCCC
Confidence 346655532 355688999999999998 88776653211 111111110010 00 1111123456677788999
Q ss_pred EEEEccc--chhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCC
Q 011954 153 LVVLNTA--VAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMP 230 (474)
Q Consensus 153 iV~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (474)
+||++.. ++.. +.. ... |++...+..... ..+...++.++.+++.|....+.+. .+|++
T Consensus 114 iv~~~~~~~~~~~-~~~-~~~-------p~~~~~~~~~~~---~~~~~~~~~~d~ii~~S~~~~~~l~-----~~g~~-- 174 (374)
T 2xci_A 114 ALIVVEREFWPSL-IIF-TKV-------PKILVNAYAKGS---LIEKILSKKFDLIIMRTQEDVEKFK-----TFGAK-- 174 (374)
T ss_dssp EEEEESCCCCHHH-HHH-CCS-------CEEEEEECCCCC---HHHHHHHTTCSEEEESCHHHHHHHH-----TTTCC--
T ss_pred EEEEECccCcHHH-HHH-HhC-------CEEEEEeecCch---HHHHHHHHhCCEEEECCHHHHHHHH-----HcCCC--
Confidence 9998642 2221 111 111 333332222111 1233445667777777776665543 34665
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEE
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMH 310 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (474)
++.|++|+. |.+.... ++. + +.+++++.|+ ..||++.+++|++++.+ ++|+++
T Consensus 175 ki~vi~n~~----f~~~~~~----------~~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~-------~~p~~~ 227 (374)
T 2xci_A 175 RVFSCGNLK----FICQKGK----------GIK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKK-------TYSSLK 227 (374)
T ss_dssp SEEECCCGG----GCCCCCS----------CCC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHT-------TCTTCE
T ss_pred eEEEcCCCc----cCCCcCh----------hhh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHh-------hCCCcE
Confidence 899999973 2111100 000 1 1245666664 46899999999998865 568999
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCC--------CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcC
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQ--------DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQ 382 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~--------~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G 382 (474)
|+|+|+|+ +..++++++++++++. ++|.+.|+.+++..+|+.||++++||.. .|++|++++||||||
T Consensus 228 lvivG~g~----~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~-~e~gg~~~lEAmA~G 302 (374)
T 2xci_A 228 LILVPRHI----ENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTF-VNIGGHNLLEPTCWG 302 (374)
T ss_dssp EEEEESSG----GGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSS-SSSCCCCCHHHHTTT
T ss_pred EEEECCCH----HHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcc-cCCCCcCHHHHHHhC
Confidence 99999986 2336899999999886 4688889889999999999998888752 578899999999999
Q ss_pred CCEEEc-CCCCcceeeeeC-CceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 011954 383 LPVLGT-AAGGTMEIVVNG-TTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLE 447 (474)
Q Consensus 383 ~PvI~s-~~~g~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~ 447 (474)
+|||++ ++++++|++.+. .+|++++++| +++|+++|.++++| +.+++|++++++++.+++..
T Consensus 303 ~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d--~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 303 IPVIYGPYTHKVNDLKEFLEKEGAGFEVKN--ETELVTKLTELLSV-KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp CCEEECSCCTTSHHHHHHHHHTTCEEECCS--HHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEECCCccChHHHHHHHHHCCCEEEeCC--HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcccH
Confidence 999975 789999988653 5789999888 99999999999999 99999999999999876554
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.96 E-value=7.7e-28 Score=234.21 Aligned_cols=288 Identities=13% Similarity=0.038 Sum_probs=207.5
Q ss_pred CCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc---------hhhhhhcccccccccccccccHHHHHHh
Q 011954 150 NADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF---------KLEYVKHLPFVAGAMIDSYTTAEYWKNR 220 (474)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (474)
.-|+|.+|+.....+ ..+++...+. .++.+.+|...+... .....+.+-.+|.+...+....+.+...
T Consensus 149 ~~D~VwVhDYhL~ll-p~~lR~~~~~--~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGV-PALLREQRPD--APILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTH-HHHHHHHCTT--SCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHH-HHHHHhhCCC--CeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 468999998765433 3444444433 478888886532211 1122233334455555555444444444
Q ss_pred HHHHh-cCC-------------CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchH
Q 011954 221 TRERL-GIR-------------MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQD 286 (474)
Q Consensus 221 ~~~~~-~~~-------------~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~ 286 (474)
....+ |.. ..++.++|+|||.+.|.+.... .+.++|++++ ++.+|+++||+++.||++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----~~~~lr~~~~---~~~lIl~VgRLd~~KGi~ 297 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----LPEGIEEWAD---GHRLVVHSGRTDPIKNAE 297 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----CCTTHHHHHT---TSEEEEEEEESSGGGCHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----HHHHHHHHhC---CceEEEEcccCccccCHH
Confidence 44444 322 1367899999999999765421 1246777776 578899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCc---EEEEEEcCCCCcCch----HHHHHHHHHHHcC----CCCeEEEecCC--CChHHH
Q 011954 287 LFLHSFYESLQLIREKKLQVPS---MHAVVVGSDMNAQTK----FETELRNFVAEKK----IQDHVHFVNKT--LTVSPY 353 (474)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~---~~l~i~G~g~~~~~~----~~~~l~~~~~~~~----l~~~v~~~g~~--~~~~~~ 353 (474)
.+++|+ ++.+. +|+ +.|+++|.+..++.+ +.+++++++.+++ .. .|+|+|.. +++..+
T Consensus 298 ~lL~Af-~ll~~-------~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~al 368 (496)
T 3t5t_A 298 RAVRAF-VLAAR-------GGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIAC 368 (496)
T ss_dssp HHHHHH-HHHHH-------TSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHH
T ss_pred HHHHHH-HHHHh-------CcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHH
Confidence 999999 88773 354 678888754322222 3445555555443 22 69999974 789999
Q ss_pred HhcCCEEEEcCCCCCCCCchHHHHHHhcC---CCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh-CHHH
Q 011954 354 LASIDVLVQNSQARGECFGRITIEAMAFQ---LPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-HVER 429 (474)
Q Consensus 354 ~~~adv~v~ps~~~~E~~~~~~~EAma~G---~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (474)
|+.||++|+||. .||||++++|||||| .|+|+|..+|..+.+ +.+|++++|.| ++++|++|.++++ +++.
T Consensus 369 y~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 442 (496)
T 3t5t_A 369 FRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFD--LVEQAEAISAALAAGPRQ 442 (496)
T ss_dssp HHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTB--HHHHHHHHHHHHHCCHHH
T ss_pred HHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCC--HHHHHHHHHHHHcCCHHH
Confidence 999999999999 999999999999997 899999999998887 45799999999 9999999999998 5678
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 430 RLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
++++.++.++++.+ ++....++.+++.++.....
T Consensus 443 r~~r~~~~~~~V~~-~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 443 RAEAAARRRDAARP-WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHHHHTT-CBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCHHHHHHHHHHHHhhcccc
Confidence 88888999998866 99999999999988877544
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.95 E-value=6.7e-28 Score=233.60 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=208.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCCCCCc-hhhhhhccc----chh--ccceee-----eehh
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQKPNEP-DEVIYSLEH----KML--DRGVQV-----LSAK 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~-~~~~~~~~~----~~~--~~~~~~-----~~~~ 140 (474)
||||++++...+..| ....++++|.+. ||+|.+++....... ......+.. .+. ..+... ....
T Consensus 5 mmkIl~v~~~~~~~~---~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (376)
T 1v4v_A 5 MKRVVLAFGTRPEAT---KMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILP 81 (376)
T ss_dssp CEEEEEEECSHHHHH---HHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHH
T ss_pred ceEEEEEEeccHHHH---HHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHHH
Confidence 489999996532222 356789999988 899887764321110 000000000 000 000000 0011
Q ss_pred cHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccc----hh-hhhhcc-cccccccccccccH
Q 011954 141 GEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYF----KL-EYVKHL-PFVAGAMIDSYTTA 214 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~----~~-~~~~~~-~~~~~~~~~s~~~~ 214 (474)
....+.+..+||+||+|+.....+........ ...|++.+.+....... .. ...+.+ ...+.+++.+....
T Consensus 82 ~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 158 (376)
T 1v4v_A 82 QAARALKEMGADYVLVHGDTLTTFAVAWAAFL---EGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAK 158 (376)
T ss_dssp HHHHHHHHTTCSEEEEESSCHHHHHHHHHHHH---TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHH
T ss_pred HHHHHHHHcCCCEEEEeCChHHHHHHHHHHHH---hCCCEEEEeCCCccccccCCCchHHHHHHHHHHhceeeCCCHHHH
Confidence 34455667899999998754333322222211 12455543333211100 00 111111 22334444444443
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCC-CccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGN-SKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFY 293 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~ 293 (474)
+. +. .+|++.+++.+++|++ |...+... +.++++++ ++++++++++||+...||++.+++|++
T Consensus 159 ~~----l~-~~g~~~~ki~vi~n~~~d~~~~~~~---------~~~~~~~~--~~~~~vl~~~gr~~~~k~~~~ll~a~~ 222 (376)
T 1v4v_A 159 AN----LL-KEGKREEGILVTGQTGVDAVLLAAK---------LGRLPEGL--PEGPYVTVTMHRRENWPLLSDLAQALK 222 (376)
T ss_dssp HH----HH-TTTCCGGGEEECCCHHHHHHHHHHH---------HCCCCTTC--CSSCEEEECCCCGGGGGGHHHHHHHHH
T ss_pred HH----HH-HcCCCcceEEEECCchHHHHhhhhh---------hhHHHHhc--CCCCEEEEEeCcccchHHHHHHHHHHH
Confidence 33 32 3577778899999975 32211100 11123333 245677888999988889999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEE-cCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCC
Q 011954 294 ESLQLIREKKLQVPSMHAVVV-GSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGEC 370 (474)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~ 370 (474)
++.+ ++++++++++ |+++ ...+.+++++.. .++|+|+|+. .++.++|+.||++|.|| +
T Consensus 223 ~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~~S----~- 283 (376)
T 1v4v_A 223 RVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVTDS----G- 283 (376)
T ss_dssp HHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEESC----H-
T ss_pred HHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEECC----c-
Confidence 8865 3478898886 7552 245666666532 3589999532 38999999999999987 2
Q ss_pred CchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011954 371 FGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHH 449 (474)
Q Consensus 371 ~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 449 (474)
|+ ++|||+||+|||++ +.+|..+++.++ +|++++. | +++|+++|.++++|++.+++|++++ +.|.+..
T Consensus 284 -g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~-----~~~~~~~ 352 (376)
T 1v4v_A 284 -GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAGT-D--PEGVYRVVKGLLENPEELSRMRKAK-----NPYGDGK 352 (376)
T ss_dssp -HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHTCHHHHHHHHHSC-----CSSCCSC
T ss_pred -CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECCC-C--HHHHHHHHHHHHhChHhhhhhcccC-----CCCCCCh
Confidence 44 88999999999987 578888887554 8999963 6 9999999999999999999998643 4477777
Q ss_pred HHHHHHHHHHHHHh
Q 011954 450 MSQRIALVLREVLQ 463 (474)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (474)
.++++.+.+.+++.
T Consensus 353 ~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 353 AGLMVARGVAWRLG 366 (376)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888775
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.94 E-value=2.3e-27 Score=204.08 Aligned_cols=152 Identities=21% Similarity=0.272 Sum_probs=134.2
Q ss_pred cCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHH--HcCCCCeE
Q 011954 264 LGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVA--EKKIQDHV 341 (474)
Q Consensus 264 ~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~--~~~l~~~v 341 (474)
+.++.++++|+|+|++.+.||++.+++++.++ ++++|+|+|+++ ..+.++++++ ++++.++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~-----~~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFS-----KGDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCC-----TTSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCc-----cHHHHHHHHHhhhcccCCcE
Confidence 45667888999999999999999999999876 689999999986 3456777787 77888999
Q ss_pred EEecCCC--ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHH
Q 011954 342 HFVNKTL--TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANN 419 (474)
Q Consensus 342 ~~~g~~~--~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (474)
+|+|+++ ++..+|+.||++|+||. .|++|++++|||+||+|||+++.++..|++.++.+|+++ ++| +++++++
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d--~~~l~~~ 155 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NAD--VNEIIDA 155 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSC--HHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCC--HHHHHHH
Confidence 9999874 49999999999999998 899999999999999999999999999999999999999 777 9999999
Q ss_pred HHHHhhCHHH-HHHHHHH
Q 011954 420 IVKLATHVER-RLTMGKK 436 (474)
Q Consensus 420 i~~ll~~~~~-~~~~~~~ 436 (474)
|.++++|++. +++++++
T Consensus 156 i~~l~~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 156 MKKVSKNPDKFKKDCFRR 173 (177)
T ss_dssp HHHHHHCTTTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 9999998875 4444333
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.89 E-value=1.1e-22 Score=197.08 Aligned_cols=344 Identities=15% Similarity=0.102 Sum_probs=203.2
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCCCCC-chhhhhhcccchhccceeee------------
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQKPNE-PDEVIYSLEHKMLDRGVQVL------------ 137 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------ 137 (474)
|+||||+++...-+ + -.....++++|++. |+++.++....... .......+.-. ....+.+.
T Consensus 23 ~~m~ki~~v~Gtr~--~-~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~-~~~~l~~~~~~~~~~~~~~~ 98 (396)
T 3dzc_A 23 NAMKKVLIVFGTRP--E-AIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSIT-PDFDLNIMEPGQTLNGVTSK 98 (396)
T ss_dssp -CCEEEEEEECSHH--H-HHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCC-CSEECCCCCTTCCHHHHHHH
T ss_pred CCCCeEEEEEeccH--h-HHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCC-CceeeecCCCCCCHHHHHHH
Confidence 55789999986432 1 13567889999886 78887555322211 11110000000 00011110
Q ss_pred ehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccccc----chhhhhhcc--ccccccccccc
Q 011954 138 SAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHY----FKLEYVKHL--PFVAGAMIDSY 211 (474)
Q Consensus 138 ~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----~~~~~~~~~--~~~~~~~~~s~ 211 (474)
....+..+++..+||+||++......+....... . ...|++...+...... +.....+.+ ...+.+++.+.
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~-~--~~IPv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~~~~se 175 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAY-Y--QQIPVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYHFAPTD 175 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHH-T--TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSH
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHH-H--hCCCEEEEECCccccccccCCcHHHHHHHHHHhcCEEECCCH
Confidence 1123456667799999999875544332222111 1 2346554333221111 111111111 22233334343
Q ss_pred ccHHHHHHhHHHHhcCCCCCeEEEeCCC-CccccchhhhhHHHHHhHHHHHHhcC-CCC-CCEEEEEecccc-cCcchHH
Q 011954 212 TTAEYWKNRTRERLGIRMPETYVVHLGN-SKDLMDIAEDSVARRVLREHVRESLG-VRD-DDLLFAIINSVS-RGKGQDL 287 (474)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~i~~vgrl~-~~Kg~~~ 287 (474)
.. ++.+. ..|++++++.+++|++ |...+.+... ......++++++++| ++. +++++++.+|.. ..|+++.
T Consensus 176 ~~----~~~l~-~~G~~~~ki~vvGn~~~d~~~~~~~~~-~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ 249 (396)
T 3dzc_A 176 TS----RANLL-QENYNAENIFVTGNTVIDALLAVREKI-HTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFER 249 (396)
T ss_dssp HH----HHHHH-HTTCCGGGEEECCCHHHHHHHHHHHHH-HHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHH
T ss_pred HH----HHHHH-HcCCCcCcEEEECCcHHHHHHHhhhhc-ccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHH
Confidence 33 33333 4688888999999865 3222211110 000111367889999 444 445555566654 3578999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEE-cCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcC
Q 011954 288 FLHSFYESLQLIREKKLQVPSMHAVVV-GSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNS 364 (474)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps 364 (474)
+++|+.++.+ ++|++++++. |.++ ...+.++++ ++..++|+++++. .++..+|+.||++|.+|
T Consensus 250 ll~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S 315 (396)
T 3dzc_A 250 ICQALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS 315 (396)
T ss_dssp HHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHCSEEEESC
T ss_pred HHHHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC
Confidence 9999998865 4578999886 5442 234444443 3445689998875 57889999999999887
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 365 QARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 365 ~~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
| |+. +|||++|+|||++ +.++.+|++.+| .+++++. | ++++++++.++++|++.+++|++++..
T Consensus 316 -----G-g~~-~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~~~~m~~~~~~---- 380 (396)
T 3dzc_A 316 -----G-GIQ-EEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQAYQAMSQAHNP---- 380 (396)
T ss_dssp -----S-GGG-TTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHHHHHHHTSCCT----
T ss_pred -----c-cHH-HHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHHHHHHhhccCC----
Confidence 2 444 8999999999999 788888888776 6777765 5 899999999999999999999886543
Q ss_pred hcCHHHHHHHHHHHH
Q 011954 444 RFLEHHMSQRIALVL 458 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~ 458 (474)
|.....++++.+++
T Consensus 381 -~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 381 -YGDGKACQRIADIL 394 (396)
T ss_dssp -TCCSCHHHHHHHHH
T ss_pred -CcCChHHHHHHHHH
Confidence 44445555555543
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.88 E-value=9.5e-22 Score=192.71 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=129.1
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
++++++++.|++. .++.+.+.+++..+.+ .+.++++++++... .+.++ ++.++|++.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~~----~~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSLD----VSGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSCC----CTTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCCC----hhhhc------cCCCcEEEeCCC
Confidence 4567888889986 6777777777766633 35677776665321 11111 245799999999
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
++.++|+.||++|.++ .+.+++|||++|+|+|+.+.++ ..+.+.+..+|+++++++.|+++|+++|.++
T Consensus 301 -~~~~~l~~ad~~v~~~------g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~l 373 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHG------GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRL 373 (412)
T ss_dssp -CHHHHGGGCSEEEESC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHH
T ss_pred -CHHHHHhcCcEEEECC------chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 8999999999999655 3579999999999999977654 5677778889999988722299999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 424 ATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
++|++.+++|++.+++.... ++++++++.+++++.+
T Consensus 374 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 374 LAEESYRAGARAVAAEIAAM-PGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHCHHHHHHHHHHHHHHHHS-CCHHHHHTTHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHhcc
Confidence 99999999999999887665 8999999999988754
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.88 E-value=6.7e-21 Score=182.77 Aligned_cols=320 Identities=13% Similarity=0.052 Sum_probs=189.6
Q ss_pred ccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeee-------------
Q 011954 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLS------------- 138 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 138 (474)
|++||++... + .||- .-...++++|+++||+|.+++...+.+... +...++.+..
T Consensus 1 M~~~i~i~~G--G-TgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~--------v~~~g~~~~~i~~~~~~~~~~~~ 69 (365)
T 3s2u_A 1 MKGNVLIMAG--G-TGGHVFPALACAREFQARGYAVHWLGTPRGIENDL--------VPKAGLPLHLIQVSGLRGKGLKS 69 (365)
T ss_dssp --CEEEEECC--S-SHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHH--------TGGGTCCEEECC-----------
T ss_pred CCCcEEEEcC--C-CHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhch--------hhhcCCcEEEEECCCcCCCCHHH
Confidence 4678988652 1 1222 336789999999999999998654321110 1111111100
Q ss_pred -----------hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhccccccccc
Q 011954 139 -----------AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAM 207 (474)
Q Consensus 139 -----------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (474)
......+++..+||+|+++....+.....+.+ . ...|++ +|+..... ....+...++.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~--~--~~iP~v--ihe~n~~~-G~~nr~l~~~a~~v~ 142 (365)
T 3s2u_A 70 LVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAAR--L--NGVPLV--IHEQNAVA-GTANRSLAPIARRVC 142 (365)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHH--H--TTCCEE--EEECSSSC-CHHHHHHGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHH--H--cCCCEE--EEecchhh-hhHHHhhccccceee
Confidence 01223456678999999987654432222111 1 123555 45432111 111111112222222
Q ss_pred ccccccHHHHHHhHHHHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCE-EEEEecccccCcchH
Q 011954 208 IDSYTTAEYWKNRTRERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDL-LFAIINSVSRGKGQD 286 (474)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vgrl~~~Kg~~ 286 (474)
..... .+ ...+++.++.|++..+.+.... ...+++.+++ ++++.|++...+..+
T Consensus 143 ~~~~~-----------~~-~~~~k~~~~g~pvr~~~~~~~~-------------~~~~~~~~~~~ilv~gGs~g~~~~~~ 197 (365)
T 3s2u_A 143 EAFPD-----------TF-PASDKRLTTGNPVRGELFLDAH-------------ARAPLTGRRVNLLVLGGSLGAEPLNK 197 (365)
T ss_dssp ESSTT-----------SS-CC---CEECCCCCCGGGCCCTT-------------SSCCCTTSCCEEEECCTTTTCSHHHH
T ss_pred ecccc-----------cc-cCcCcEEEECCCCchhhccchh-------------hhcccCCCCcEEEEECCcCCccccch
Confidence 21111 01 1345678888998877665332 2244555554 445557777777777
Q ss_pred HHHHHHHHHHHHHHHhccCCCcEEEE-EEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 287 LFLHSFYESLQLIREKKLQVPSMHAV-VVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~-i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
.+.+++.++.. ..+++++ ++|.+ ..+.+.+..++.+. ++.+.++.+++.++|+.||++|.-+
T Consensus 198 ~~~~al~~l~~--------~~~~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra- 260 (365)
T 3s2u_A 198 LLPEALAQVPL--------EIRPAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA- 260 (365)
T ss_dssp HHHHHHHTSCT--------TTCCEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC-
T ss_pred hhHHHHHhccc--------ccceEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC-
Confidence 78888876532 1344544 44544 45566666666664 6788899999999999999999432
Q ss_pred CCCCCCchHHHHHHhcCCCEEEcCCCCcc--------eeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 011954 366 ARGECFGRITIEAMAFQLPVLGTAAGGTM--------EIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKG 437 (474)
Q Consensus 366 ~~~E~~~~~~~EAma~G~PvI~s~~~g~~--------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~ 437 (474)
.+.++.|+|++|+|+|..+.+... +.+.+...|++++..+.+++.|+++|.++++|++.+++|++++
T Consensus 261 -----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a 335 (365)
T 3s2u_A 261 -----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQA 335 (365)
T ss_dssp -----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred -----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 478999999999999988765431 2345566899988766558999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 011954 438 YERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~ 458 (474)
++.... ...+++++.++++.
T Consensus 336 ~~~~~~-~aa~~ia~~i~~la 355 (365)
T 3s2u_A 336 RSLAKP-EATRTVVDACLEVA 355 (365)
T ss_dssp HHTCCT-THHHHHHHHHHHHC
T ss_pred HhcCCc-cHHHHHHHHHHHHH
Confidence 876543 34445555444443
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.87 E-value=4.7e-22 Score=192.95 Aligned_cols=342 Identities=14% Similarity=0.130 Sum_probs=200.5
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCC-Cchhhhhhcccchhccceee------------
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPN-EPDEVIYSLEHKMLDRGVQV------------ 136 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------ 136 (474)
|++|||+++...-+ + -.....++++|++. |+++.++...... ........+.-. ....+.+
T Consensus 25 m~~~kI~~v~Gtr~--~-~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~-~~~~l~v~~~~~~~~~~~~ 100 (403)
T 3ot5_A 25 MAKIKVMSIFGTRP--E-AIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIK-PDIDLDIMKKGQTLAEITS 100 (403)
T ss_dssp -CCEEEEEEECSHH--H-HHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCC-CSEECCCCC-CCCHHHHHH
T ss_pred cccceEEEEEecCh--h-HHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCC-CCcccccCCCCCCHHHHHH
Confidence 55679999985432 1 13467889999887 6887755532211 111111111100 0000111
Q ss_pred eehhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeecccc--cc--chh-hhhhcccc-cccccccc
Q 011954 137 LSAKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRG--HY--FKL-EYVKHLPF-VAGAMIDS 210 (474)
Q Consensus 137 ~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~--~~--~~~-~~~~~~~~-~~~~~~~s 210 (474)
.....+..+++..+||+||+++.....+....... . ...|++....+... .+ +.. ..+..+.. .+.+++.+
T Consensus 101 ~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~-~--~~IPv~h~~aglrs~~~~~~~p~~~~r~~~~~~a~~~~~~s 177 (403)
T 3ot5_A 101 RVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATF-Y--QQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADIHFSPT 177 (403)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHH-H--TTCEEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESS
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHH-H--hCCCEEEEECCccccccccCCcHHHHHHHHHHhcCEEECCC
Confidence 01123456667799999999875433332221111 1 22455432222211 10 111 11111111 22233333
Q ss_pred cccHHHHHHhHHHHhcCCCCCeEEEeCCC-CccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccccc-CcchHHH
Q 011954 211 YTTAEYWKNRTRERLGIRMPETYVVHLGN-SKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSR-GKGQDLF 288 (474)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~-~Kg~~~l 288 (474)
... ++.+. ..|++++++.+++|++ |...+.+.... +.+.++++ +++++++++.||... .|+++.+
T Consensus 178 e~~----~~~l~-~~Gi~~~~i~vvGn~~~D~~~~~~~~~~------~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~l 244 (403)
T 3ot5_A 178 KQA----KENLL-AEGKDPATIFVTGNTAIDALKTTVQKDY------HHPILENL--GDNRLILMTAHRRENLGEPMQGM 244 (403)
T ss_dssp HHH----HHHHH-HTTCCGGGEEECCCHHHHHHHHHSCTTC------CCHHHHSC--TTCEEEEECCCCHHHHTTHHHHH
T ss_pred HHH----HHHHH-HcCCCcccEEEeCCchHHHHHhhhhhhc------chHHHHhc--cCCCEEEEEeCcccccCcHHHHH
Confidence 333 33332 4688888999999854 43333221100 11334444 455566777777644 4789999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEE-cCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC--ChHHHHhcCCEEEEcCC
Q 011954 289 LHSFYESLQLIREKKLQVPSMHAVVV-GSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL--TVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~~~~~~~~adv~v~ps~ 365 (474)
++|+.++.+ ++|++++++. |.++ ...+.++++ ++..++|+++++.. ++..+|+.||++|.+|
T Consensus 245 l~a~~~l~~-------~~~~~~~v~~~~~~~----~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S- 309 (403)
T 3ot5_A 245 FEAVREIVE-------SREDTELVYPMHLNP----AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS- 309 (403)
T ss_dssp HHHHHHHHH-------HCTTEEEEEECCSCH----HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-
T ss_pred HHHHHHHHH-------hCCCceEEEecCCCH----HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-
Confidence 999998876 4588999887 4432 123334333 34446899999864 8999999999999766
Q ss_pred CCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 011954 366 ARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDR 444 (474)
Q Consensus 366 ~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~ 444 (474)
|...+|||++|+|+|++ +.++.+|.+..| +|++++. | ++++++++.++++|++.+++|++++..
T Consensus 310 ------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~~~~m~~~~~~----- 374 (403)
T 3ot5_A 310 ------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKESHDKMAQAANP----- 374 (403)
T ss_dssp ------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHHHSCCT-----
T ss_pred ------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHHHHHHHhhcCc-----
Confidence 23348999999999999 678888888655 8888876 5 899999999999999999999876543
Q ss_pred cCHHHHHHHHHHHHHHHHh
Q 011954 445 FLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 445 fs~~~~~~~~~~~~~~~~~ 463 (474)
|.....++++.+++.+.+.
T Consensus 375 ~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 375 YGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp TCCSCHHHHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHHhC
Confidence 4444555556666666554
No 33
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.86 E-value=1.3e-20 Score=177.29 Aligned_cols=301 Identities=11% Similarity=0.040 Sum_probs=191.6
Q ss_pred CEEEEEecCC--CCCChhHHHHHHHHHHHhcCcEEEEEeCCCC-CCchhhhhhcccchhccceeeeehhcHHHHhhhcCC
Q 011954 75 KLVLLVSHEL--SLSGGPLLLMELAFLLRGVGAEVVWITNQKP-NEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 75 ~kIl~v~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
|++-+.+.+- ...++...-....+-+.+.|++..-+..... ..... .+...+. ..+....++
T Consensus 11 m~~~i~~~~~~~~~~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~ 75 (339)
T 3rhz_A 11 MRVYITNINGQSIQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSES---ELSKRLD------------GIVAGLRHG 75 (339)
T ss_dssp CCEEEEEEESSCTTCHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCHH---HHHHHHH------------HHTTTCCTT
T ss_pred hheeeecccCccccchHHHHHHHHHHHHHHCCCeEEEeeccccccccHH---HHHHHHH------------HHHhcCCCC
Confidence 4544444332 2234456566666777788997655542211 11000 0111110 112234789
Q ss_pred CEEEEcccchh-h-HHhHHhhhcccccccceeeeeeccccccchh------hhhhcccccccccccccccHHHHHHhHHH
Q 011954 152 DLVVLNTAVAG-K-WLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL------EYVKHLPFVAGAMIDSYTTAEYWKNRTRE 223 (474)
Q Consensus 152 DiV~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (474)
|+|+.++|... . +....+. .+.....+++..+|++....+.. .....++.+|.+++.|..+.+++.+
T Consensus 76 DvIi~q~P~~~~~~~~~~~~~-~lk~~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~---- 150 (339)
T 3rhz_A 76 DVVIFQTPTWNTTEFDEKLMN-KLKLYDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRD---- 150 (339)
T ss_dssp CEEEEEECCSSCHHHHHHHHH-HHTTSSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHHH----
T ss_pred CEEEEeCCCcchhhHHHHHHH-HHHhcCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHHH----
Confidence 99999887531 1 2122222 22223579999999986543221 1234457778888888877766553
Q ss_pred HhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhc
Q 011954 224 RLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKK 303 (474)
Q Consensus 224 ~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (474)
.|++..++.++++. |... +.+ ...+.++++|+|+|++.....+.. +
T Consensus 151 -~G~~~~ki~~~~~~-~~~~--~~~---------------~~~~~~~~~i~yaG~l~k~~~L~~----l----------- 196 (339)
T 3rhz_A 151 -FGMNVSKTVVQGMW-DHPT--QAP---------------MFPAGLKREIHFPGNPERFSFVKE----W----------- 196 (339)
T ss_dssp -TTCCCSEEEECCSC-CCCC--CCC---------------CCCCEEEEEEEECSCTTTCGGGGG----C-----------
T ss_pred -cCCCcCceeecCCC-CccC--ccc---------------ccccCCCcEEEEeCCcchhhHHHh----C-----------
Confidence 47766666444332 2110 000 012245688999999985332221 1
Q ss_pred cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCC-----CCCCCchHHH
Q 011954 304 LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQA-----RGECFGRITI 376 (474)
Q Consensus 304 ~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~-----~~E~~~~~~~ 376 (474)
.++++|+|+|+|+.. .++ +|+|+|++ +++..+|+.+|+.++.... ....+|.+++
T Consensus 197 --~~~~~f~ivG~G~~~---------------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~ 258 (339)
T 3rhz_A 197 --KYDIPLKVYTWQNVE---------------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLG 258 (339)
T ss_dssp --CCSSCEEEEESCCCC---------------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHH
T ss_pred --CCCCeEEEEeCCccc---------------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHH
Confidence 178999999999721 244 89999975 8899999888888876210 0135699999
Q ss_pred HHHhcCCCEEEcCCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011954 377 EAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRI 454 (474)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 454 (474)
||||||+|||+++.++..|++.++.+|+++++ .++++++|..+ +++.+++|++++++.+++ +++..+.++.
T Consensus 259 eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~~----~~e~~~~i~~l--~~~~~~~m~~na~~~a~~-~~~~~f~k~~ 329 (339)
T 3rhz_A 259 SFLAAGIPVIVQEGIANQELIENNGLGWIVKD----VEEAIMKVKNV--NEDEYIELVKNVRSFNPI-LRKGFFTRRL 329 (339)
T ss_dssp HHHHHTCCEEEETTCTTTHHHHHHTCEEEESS----HHHHHHHHHHC--CHHHHHHHHHHHHHHTHH-HHTTHHHHHH
T ss_pred HHHHcCCCEEEccChhHHHHHHhCCeEEEeCC----HHHHHHHHHHh--CHHHHHHHHHHHHHHHHH-hhccHHHHHH
Confidence 99999999999999999999999999999973 88999999886 467799999999987655 7777776653
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.84 E-value=1.1e-19 Score=178.97 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=121.5
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEE-EEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHA-VVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
++.++++++|++. .++.+.+.+++..+. +.+++++ +++|+++. .+.++ .+.++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~--------~~~~~~~~~~~G~~~~-----~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFG--------NLPGWHLVLQIGRKVT-----PAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHT--------TCTTEEEEEECC---C-----GGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHh--------cCCCeEEEEEeCCCCC-----hHHhc------cCCCCeEEEec
Confidence 3457888999998 455454444443331 1146787 57887742 22221 24578999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (474)
..+. ++|+.||++|..+ .+.+++|||++|+|+|+++.++ ..+.+.+...|++++.++.++++|+++|.+
T Consensus 291 ~~~~-~~l~~ad~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ 363 (430)
T 2iyf_A 291 VPQL-AILRQADLFVTHA------GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALA 363 (430)
T ss_dssp CCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHH
T ss_pred CCHH-HHhhccCEEEECC------CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 8777 8999999999654 2479999999999999998765 355566777899998773238999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 423 LATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 423 ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
+++|++.++++++.+++.... ++++++++.+++++++...
T Consensus 364 ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~ 403 (430)
T 2iyf_A 364 LVDDPEVARRLRRIQAEMAQE-GGTRRAADLIEAELPARHE 403 (430)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHTTSCC---
T ss_pred HHcCHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHhhcccc
Confidence 999999999999998887655 8999999999888766543
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.84 E-value=7e-21 Score=185.60 Aligned_cols=158 Identities=12% Similarity=0.089 Sum_probs=108.7
Q ss_pred CCCEEEEEecccccCc----------chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCC
Q 011954 268 DDDLLFAIINSVSRGK----------GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKI 337 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~K----------g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l 337 (474)
+++.+++++|++...| .++.+++++.+ .+++++++|++. ..+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~~-----~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSDK-----LAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCCc-----chhhhc------cC
Confidence 4567888889997555 34555555532 367888888774 222222 24
Q ss_pred CCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC----CCCcceeeeeCCceeeecCCCCCh
Q 011954 338 QDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA----AGGTMEIVVNGTTGLLHPTGKEGV 413 (474)
Q Consensus 338 ~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~----~~g~~e~v~~~~~G~l~~~~d~~~ 413 (474)
.++|++.|+. ++.+++..||++|. .+.+.+++|||++|+|+|+.. ..+..+.+.+...|++++.++.++
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~------~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 355 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVH------HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGV 355 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC------
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEe------cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCH
Confidence 5799999998 68999999999993 445789999999999999954 446677777888999998773238
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011954 414 TPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIAL 456 (474)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 456 (474)
++|+++|.++++|++.+++|++.+++.... .+++++++.+++
T Consensus 356 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 397 (398)
T 4fzr_A 356 ESVLAACARIRDDSSYVGNARRLAAEMATL-PTPADIVRLIEQ 397 (398)
T ss_dssp -CHHHHHHHHHHCTHHHHHHHHHHHHHTTS-CCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHcC-CCHHHHHHHHhc
Confidence 999999999999999999999988876544 899988887653
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.82 E-value=1.2e-19 Score=176.36 Aligned_cols=163 Identities=9% Similarity=0.094 Sum_probs=124.3
Q ss_pred CCCEEEEEecccccCcch-HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQ-DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+++.++++.|+....|+. ..+++++.+. + +.|+++++++|+++ ..+.+. ++.++|++.|+
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~-----~~~~l~------~~~~~v~~~~~ 277 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPE-----HRALLT------DLPDNARIAES 277 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGG-----GGGGCT------TCCTTEEECCS
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCc-----chhhcc------cCCCCEEEecc
Confidence 345677778998775555 6777777665 4 45789999998874 222221 34578999998
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC----CCcceeeeeCCceeeecC----CCCChHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA----GGTMEIVVNGTTGLLHPT----GKEGVTPLAN 418 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~----~d~~~~~la~ 418 (474)
. +..+++..||++|. ++.+.+++|||++|+|+|+... .+..+.+.+...|+++++ .+ +++|++
T Consensus 278 ~-~~~~ll~~ad~~v~------~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~--~~~l~~ 348 (391)
T 3tsa_A 278 V-PLNLFLRTCELVIC------AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSD--HEQFTD 348 (391)
T ss_dssp C-CGGGTGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTC--HHHHHH
T ss_pred C-CHHHHHhhCCEEEe------CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCC--HHHHHH
Confidence 7 46678899999994 4456799999999999999644 345666777889999988 55 999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 419 NIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
++.++++|++.+++|++.+++.. +..+++++++.++++..
T Consensus 349 ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 349 SIATVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHHHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 99999999999999988887765 44899888887776543
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.81 E-value=2e-18 Score=168.18 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=120.7
Q ss_pred CCCEEEEEecccccC-cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRG-KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+++.+++++|++... ++.+.+.+++..+.+ .+++++++|+++. .+.+. ++.++|.+.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLD-----ISPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSC-----CGGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcC-----hhhhc------cCCCcEEEEcc
Confidence 455788889999665 466666665555532 4688999988752 11111 34679999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEE----cCCCCcc--eeeeeCCceeeecCCCCChHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLG----TAAGGTM--EIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~----s~~~g~~--e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
. ++.++|..||++|. .+.+.+++|||++|+|+|+ .+.++.. +.+.+...|+++++.+.+.+.++
T Consensus 291 ~-~~~~ll~~ad~~v~------~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~--- 360 (398)
T 3oti_A 291 T-PLHTLLRTCTAVVH------HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR--- 360 (398)
T ss_dssp C-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH---
T ss_pred C-CHHHHHhhCCEEEE------CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH---
Confidence 9 89999999999994 4456799999999999999 5567777 88888889999987642355555
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 421 VKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 421 ~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
++++|++.+++|++.+++.. +..+++.+++.+++++
T Consensus 361 -~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 -RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp -HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred -HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 88899999999988888755 4589999998887764
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.80 E-value=2.4e-18 Score=167.89 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=116.8
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEE-EcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVV-VGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+.+.++++.|+....+. +.+.+++..+. + .++++++ +|++.. .+.++ .+.++|++.|+
T Consensus 230 ~~~~v~v~~G~~~~~~~-~~~~~~~~~~~--------~-~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHP-EFFRACAQAFA--------D-TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCCH-HHHHHHHHHHT--------T-SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHHHHh--------c-CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 45678888898866542 22322222221 1 2356655 565431 11111 24578999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC-----CCcceeeeeCCceeeecCCCCChHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA-----GGTMEIVVNGTTGLLHPTGKEGVTPLANNIV 421 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~-----~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (474)
..+. ++|..||++|..+ ...+++|||++|+|+|+... .+..+.+.+...|..++.++.+++++++++.
T Consensus 289 ~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~ 361 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHG------TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVE 361 (402)
T ss_dssp CCHH-HHHTTEEEEEECC------CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECC------CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHH
Confidence 8777 9999999999554 34789999999999996544 3556667778899999876323899999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 422 KLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 422 ~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
++++|++.++++++.+++.. +..+++++++.+++++.+
T Consensus 362 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 362 RLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 99999999999988777654 458888888888887754
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.76 E-value=4.4e-17 Score=159.59 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=114.7
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEE-EcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVV-VGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+.+.++++.|+.....+ +.+...+..+ + + .++++++ +|+++. .+.++ .+.++|++.++
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al-~-------~-~~~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAF-D-------G-QPWHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHH-T-------T-SSCEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHH-h-------c-CCcEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 45678888898754432 2222222222 1 1 2377776 665531 11111 34578999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCC----CCcceeeeeCCceeeecCCCCChHHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAA----GGTMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (474)
..+. +++..||++|..+ ...+++|||++|+|+|+... ....+.+.+...|..++.++-++++++++|.+
T Consensus 305 ~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 377 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHG------GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGA 377 (415)
T ss_dssp CCHH-HHHHHEEEEEESC------CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECC------cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHH
Confidence 8766 9999999999544 34689999999999999543 33455666677888887763238999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 423 LATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 423 ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
+++|++.++++.+.+.+... ..+++++++.+++++.+
T Consensus 378 ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 378 VAADPALLARVEAMRGHVRR-AGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHTCHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhc
Confidence 99999999999887777554 48888888888777653
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.70 E-value=3.6e-15 Score=144.40 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=116.4
Q ss_pred CCCEEEEEecccccC-------cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCe
Q 011954 268 DDDLLFAIINSVSRG-------KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDH 340 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (474)
+...+++++|++... +.++.+++++.+ .+++++++++++ ..+.++. ++++
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~~-----~~~~l~~------~~~~ 265 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPDT-----VAEALRA------EVPQ 265 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCHH-----HHHHHHH------HCTT
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCCC-----CHHhhCC------CCCc
Confidence 345788899999875 566677777643 367888876542 2333332 2468
Q ss_pred EEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHH
Q 011954 341 VHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPL 416 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~l 416 (474)
|.+ |+. +..++|..||++|..+ .+.+++|||++|+|+|+.+..+ ..+.+.+...|+.++..+.+++++
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l 337 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAI 337 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHH
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHH
Confidence 999 987 5788999999999643 4578999999999999998753 555566667899988653338999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 417 ANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 417 a~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
+++|.++++|++.++++++.+.+.... -..+++++.+.++.
T Consensus 338 ~~~i~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 338 ADSCQELQAKDTYARRAQDLSREISGM-PLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHh
Confidence 999999999999999998887765543 46666665555544
No 41
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.63 E-value=1.2e-14 Score=143.77 Aligned_cols=187 Identities=14% Similarity=0.066 Sum_probs=135.4
Q ss_pred HHhcCCCCC--CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEE--EEcCCCCcCchHHHHHHHHHHHcC
Q 011954 261 RESLGVRDD--DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAV--VVGSDMNAQTKFETELRNFVAEKK 336 (474)
Q Consensus 261 r~~~~~~~~--~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~--i~G~g~~~~~~~~~~l~~~~~~~~ 336 (474)
+..++++.+ .++++++++ ..|..+.+++++.++.+ +.|+..++ ++|++. .....+.+.+.+.|
T Consensus 430 r~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~-------~vP~s~L~l~~~g~~~----g~~~~~~~~~~~~G 496 (631)
T 3q3e_A 430 KVDYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRD-------RAKVKVHFHFALGQSN----GITHPYVERFIKSY 496 (631)
T ss_dssp SCCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHH-------HCSSEEEEEEEESSCC----GGGHHHHHHHHHHH
T ss_pred cccccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHH-------hCCCcEEEEEecCCCc----hhhHHHHHHHHHcC
Confidence 345677765 678888886 47889999999999987 34776654 367432 12334444456778
Q ss_pred CCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeee------eCCceeeecC
Q 011954 337 IQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVV------NGTTGLLHPT 408 (474)
Q Consensus 337 l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~------~~~~G~l~~~ 408 (474)
+.+++.|.|.. ++....|+.+|+++.|+. + +.|++.+|||+||+|||+...++..+-+. -|-.++++..
T Consensus 497 I~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y-~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~ 573 (631)
T 3q3e_A 497 LGDSATAHPHSPYHQYLRILHNCDMMVNPFP--F-GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN 573 (631)
T ss_dssp HGGGEEEECCCCHHHHHHHHHTCSEEECCSS--S-CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES
T ss_pred CCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--c-cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC
Confidence 88899999975 566788999999999985 4 55999999999999999976554433221 1333332222
Q ss_pred CCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhh
Q 011954 409 GKEGVTPLANNIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQYAK 466 (474)
Q Consensus 409 ~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 466 (474)
+ .+++++...++.+|++.+++++++.++......-++...+++++.|++++++..
T Consensus 574 -d--~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w~ 628 (631)
T 3q3e_A 574 -T--VDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFL 628 (631)
T ss_dssp -S--HHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHH
Confidence 3 799999999999999999999999988765433333667788888888877643
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.63 E-value=6.3e-16 Score=148.49 Aligned_cols=336 Identities=9% Similarity=0.026 Sum_probs=189.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhh-cccchh--ccceee------------ee
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYS-LEHKML--DRGVQV------------LS 138 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~-~~~~~~--~~~~~~------------~~ 138 (474)
|.||+++...-+-- .-+.-+.++|++. +++.++..... .+..... +.+.+. ...+.+ ..
T Consensus 9 ~~~~~~v~GtRpe~---~k~~p~~~~l~~~-~~~~~~~tgqh--~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 82 (385)
T 4hwg_A 9 MLKVMTIVGTRPEL---IKLCCVISEFDKH-TKHILVHTGQN--YAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLV 82 (385)
T ss_dssp CCEEEEEECSHHHH---HHHHHHHHHHHHH-SEEEEEECSCH--HHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHH
T ss_pred hhheeEEEEcCHhH---HHHHHHHHHHHhc-CCEEEEEeCCC--CChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHH
Confidence 67888888421100 3467778888877 88776653321 1101110 111110 000000 00
Q ss_pred hhcHHHHhhhcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccc--cchhhh-hhcccc-cccccccccccH
Q 011954 139 AKGEKAINTALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGH--YFKLEY-VKHLPF-VAGAMIDSYTTA 214 (474)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~--~~~~~~-~~~~~~-~~~~~~~s~~~~ 214 (474)
......+++..+||+|+++......+. .... .. ...|++....+.... .+.... +..... .+..++.+...
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA-~~--~~IPv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~te~~- 157 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLS-AIAA-KR--RKIPIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITLTEHA- 157 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGG-HHHH-HH--TTCCEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEESSHHH-
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHH-HHHH-HH--hCCCEEEEeCCCccccccCcHHHHHHHHHhhhceeecCCHHH-
Confidence 123456677899999999875443332 1111 11 234654333322111 011111 111111 12222333332
Q ss_pred HHHHHhHHHHhcCCCCCeEEEeCCC-CccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc---cCcchHHHHH
Q 011954 215 EYWKNRTRERLGIRMPETYVVHLGN-SKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS---RGKGQDLFLH 290 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~---~~Kg~~~ll~ 290 (474)
++.+ .+.|++++++.++.|++ |...+.. ....+.++++++|++++++++++.+|.+ ..|+++.+++
T Consensus 158 ---~~~l-~~~G~~~~~I~vtGnp~~D~~~~~~------~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~ 227 (385)
T 4hwg_A 158 ---RRYL-IAEGLPAELTFKSGSHMPEVLDRFM------PKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLN 227 (385)
T ss_dssp ---HHHH-HHTTCCGGGEEECCCSHHHHHHHHH------HHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHH
T ss_pred ---HHHH-HHcCCCcCcEEEECCchHHHHHHhh------hhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHH
Confidence 3322 35688888999999864 3221110 0112456888999977777777777753 3478999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc-C-C--CCeEEEecCC--CChHHHHhcCCEEEEcC
Q 011954 291 SFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK-K-I--QDHVHFVNKT--LTVSPYLASIDVLVQNS 364 (474)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~-~-l--~~~v~~~g~~--~~~~~~~~~adv~v~ps 364 (474)
|+.++.+ ++ ++++++... + . +++.++++ + + .++|++.++. .++..+|+.||+++.+|
T Consensus 228 al~~l~~-------~~-~~~vv~p~~-p----~----~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S 290 (385)
T 4hwg_A 228 SLQMLIK-------EY-NFLIIFSTH-P----R----TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS 290 (385)
T ss_dssp HHHHHHH-------HH-CCEEEEEEC-H----H----HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC
T ss_pred HHHHHHh-------cC-CeEEEEECC-h----H----HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC
Confidence 9998865 22 567666543 2 1 34444444 3 2 3689998764 47889999999999555
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEcCCC-CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 011954 365 QARGECFGRITIEAMAFQLPVLGTAAG-GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERVKD 443 (474)
Q Consensus 365 ~~~~E~~~~~~~EAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 443 (474)
|.+..||+++|+|+|+.+.. +.+|.+..| +++++.. | .+++++++.++++|++.++.|++++..+...
T Consensus 291 -------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~ 359 (385)
T 4hwg_A 291 -------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNKRTQGLVPDYNEA 359 (385)
T ss_dssp -------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTBCCSCCCHHHHTC
T ss_pred -------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHHHhhccCCCCCCC
Confidence 33579999999999998654 357777555 6777754 4 8999999999999988777776655443112
Q ss_pred hcCHHHHHHHHHHHH
Q 011954 444 RFLEHHMSQRIALVL 458 (474)
Q Consensus 444 ~fs~~~~~~~~~~~~ 458 (474)
-.+.+++++.+.+.+
T Consensus 360 g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 360 GLVSKKILRIVLSYV 374 (385)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 234455555554443
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.61 E-value=4.6e-15 Score=146.28 Aligned_cols=161 Identities=10% Similarity=0.012 Sum_probs=117.6
Q ss_pred CCCEEEEEecccccC-----cchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEE
Q 011954 268 DDDLLFAIINSVSRG-----KGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVH 342 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~ 342 (474)
+...++++.|++... |.+..+++++.. .++++++++++.. .+.++ +++++|.
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~-----~~~l~------~~~~~v~ 322 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQQ-----LEGVA------NIPDNVR 322 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTTT-----TSSCS------SCCSSEE
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCcc-----hhhhc------cCCCCEE
Confidence 345788889998753 788888888853 3578888776531 11111 3457999
Q ss_pred EecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHH
Q 011954 343 FVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLAN 418 (474)
Q Consensus 343 ~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (474)
+.++..+ .++|..||++|. .+.+.+++|||++|+|+|+....+ ..+.+.+...|++++..+.+++++++
T Consensus 323 ~~~~~~~-~~ll~~ad~~V~------~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 395 (441)
T 2yjn_A 323 TVGFVPM-HALLPTCAATVH------HGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRE 395 (441)
T ss_dssp ECCSCCH-HHHGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHH
T ss_pred EecCCCH-HHHHhhCCEEEE------CCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHH
Confidence 9999865 788999999994 344679999999999999998753 45556667789998876333899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011954 419 NIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLR 459 (474)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 459 (474)
+|.++++|++.++++++.+++.. +....+.+++.+++++.
T Consensus 396 ~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 396 SVKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 99999999999999988877655 45788888877776653
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.53 E-value=7.6e-13 Score=129.73 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=110.1
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEE-EEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHA-VVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
++..++++.|+.. .+..+.+.+++..+. ..++++ +++|.+.. .+.+. .++++|.+.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~---------~~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVD---------GLDWHVVLSVGRFVD-----PADLG------EVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHT---------TCSSEEEEECCTTSC-----GGGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHh---------cCCcEEEEEECCcCC-----hHHhc------cCCCCeEEecC
Confidence 3457778889886 333333333333331 146677 45676531 11111 24578999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (474)
..+. ++|..||++|.. +...+++|||++|+|+|+....+ ..+.+.+...|+.++..+.+.++++++|.+
T Consensus 313 ~~~~-~~l~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 385 (424)
T 2iya_A 313 VPQL-DILTKASAFITH------AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLA 385 (424)
T ss_dssp CCHH-HHHTTCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEEC------CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHH
Confidence 8776 899999999843 34579999999999999997653 234455667888887552238999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 423 LATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 423 ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
+++|++.++++++.+.+.. +....++.++.+++++
T Consensus 386 ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 386 VASDPGVAERLAAVRQEIR-EAGGARAAADILEGIL 420 (424)
T ss_dssp HHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 9999998888877766543 3456666666666554
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.50 E-value=4.3e-13 Score=130.48 Aligned_cols=157 Identities=9% Similarity=-0.006 Sum_probs=106.5
Q ss_pred CCCEEEEEecccc-cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVS-RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
.++.++++.|++. ..+.+..+++++.+ .++++++.++..... ..+..+++.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~------------~~~~vv~~~g~~~~~------------~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRA------------QGRRVVLSSGWAGLG------------RIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHH------------TTCCEEEECTTTTCC------------CSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHh------------CCCEEEEEeCCcccc------------cccCCCCEEEecC
Confidence 4456777889987 56666777777654 356777765532110 1234578999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVK 422 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (474)
.. ..+++..||++|.. |...++.||+++|+|+|+....+- .+.+.+...|..++..+.+.++++++|.+
T Consensus 276 ~~-~~~ll~~~d~~v~~------gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 348 (404)
T 3h4t_A 276 VN-HQVLFGRVAAVVHH------GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALAT 348 (404)
T ss_dssp CC-HHHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CC-HHHHHhhCcEEEEC------CcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHH
Confidence 74 48899999999943 345789999999999999876543 22344556788877554348999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011954 423 LATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL 458 (474)
Q Consensus 423 ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 458 (474)
+++ ++.++++.+.+.+.. + -..+++++.+++++
T Consensus 349 ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 349 ALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHH
Confidence 998 877777666554322 2 34455555554444
No 46
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.49 E-value=8.9e-13 Score=133.06 Aligned_cols=247 Identities=12% Similarity=0.054 Sum_probs=162.9
Q ss_pred ccccccHHHHHHh-HHHHhcCCCCCeEEEeCCCCcccc----chhh--------------------------hh------
Q 011954 208 IDSYTTAEYWKNR-TRERLGIRMPETYVVHLGNSKDLM----DIAE--------------------------DS------ 250 (474)
Q Consensus 208 ~~s~~~~~~~~~~-~~~~~~~~~~ki~vi~ngvd~~~~----~~~~--------------------------~~------ 250 (474)
.+|...++.++.. +..-+..-+.++.-|-||||...+ .|.- +.
T Consensus 419 gVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~ 498 (796)
T 1l5w_A 419 GVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQ 498 (796)
T ss_dssp ESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHH
T ss_pred cccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHH
Confidence 3444444444421 112234455789999999998877 2321 00
Q ss_pred --HHHHHhHHH----HHHhcCCC--CCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC
Q 011954 251 --VARRVLREH----VRESLGVR--DDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ 321 (474)
Q Consensus 251 --~~~~~~~~~----~r~~~~~~--~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~ 321 (474)
..+...+.. +++++|++ ++.+.++++.|++.+||+++ ++..+.++.+...+......++++++.|.+.+..
T Consensus 499 l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y 578 (796)
T 1l5w_A 499 YREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGY 578 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhH
Confidence 122222344 46777864 56799999999999999999 8998887764332211111469999999986554
Q ss_pred chHHHHHHHHHHHc--------CCCC--eEEEecC-C-CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 322 TKFETELRNFVAEK--------KIQD--HVHFVNK-T-LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 322 ~~~~~~l~~~~~~~--------~l~~--~v~~~g~-~-~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
. ..+.+.+++... .+.+ +|.|+.. . +--..++.+||++++||+...|++|+.-|=||..|.+.|++-
T Consensus 579 ~-~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtL 657 (796)
T 1l5w_A 579 Y-LAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTL 657 (796)
T ss_dssp H-HHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECS
T ss_pred H-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCc
Confidence 3 233333333322 3456 7888864 3 444567899999999998668999999999999999999998
Q ss_pred CCCcceeeee--CCceeeecCCCCChHHHHH-------HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011954 390 AGGTMEIVVN--GTTGLLHPTGKEGVTPLAN-------NIVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLRE 460 (474)
Q Consensus 390 ~~g~~e~v~~--~~~G~l~~~~d~~~~~la~-------~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 460 (474)
-|...|+.+. .+||++|.. + ++++.+ +....-.+++ ++++-+++ +...|||+.- ..|.++|++
T Consensus 658 DGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~~-~~~vvd~~---~~g~fs~~~~-~~y~~Ly~~ 729 (796)
T 1l5w_A 658 DGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDKV-LDAVLKEL---ESGKYSDGDK-HAFDQMLHS 729 (796)
T ss_dssp CTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCHH-HHHHHHHH---HHTTTTTTCT-TTTHHHHHH
T ss_pred CCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCHH-HHHHHHHH---HcCCCCCCcH-HHHHHHHHH
Confidence 8887777543 469999987 4 677663 2222333553 44443433 3467999875 778899988
Q ss_pred HHh
Q 011954 461 VLQ 463 (474)
Q Consensus 461 ~~~ 463 (474)
++.
T Consensus 730 L~~ 732 (796)
T 1l5w_A 730 IGK 732 (796)
T ss_dssp TST
T ss_pred Hhc
Confidence 764
No 47
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.46 E-value=4.9e-13 Score=134.93 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=162.8
Q ss_pred ccccccHHHHHH-hHHHHhcCCCCCeEEEeCCCCcccc----chhhh---------------------------h-----
Q 011954 208 IDSYTTAEYWKN-RTRERLGIRMPETYVVHLGNSKDLM----DIAED---------------------------S----- 250 (474)
Q Consensus 208 ~~s~~~~~~~~~-~~~~~~~~~~~ki~vi~ngvd~~~~----~~~~~---------------------------~----- 250 (474)
.+|...++..+. .+...+..-+.++.-|-||||...+ .|.-. .
T Consensus 408 gVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~ 487 (796)
T 2c4m_A 408 GVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLE 487 (796)
T ss_dssp ESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHH
T ss_pred eccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHH
Confidence 344444555442 2222234456789999999999888 23210 0
Q ss_pred ---HHHHHhHHH----HHHhcCCC--CCCEEEEEecccccCcchHH-HHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCc
Q 011954 251 ---VARRVLREH----VRESLGVR--DDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIREKKLQVPSMHAVVVGSDMNA 320 (474)
Q Consensus 251 ---~~~~~~~~~----~r~~~~~~--~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~ 320 (474)
..+...+.. ++++.|++ ++.+.++++.|++.+||+++ ++..+.++.+...+......++++++.|.+.+.
T Consensus 488 ~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~ 567 (796)
T 2c4m_A 488 ELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPG 567 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHh
Confidence 112222344 46777764 56799999999999999999 899888775432211001136999999998655
Q ss_pred CchHHHHHHHHHHHc--------CCCC--eEEEecC-C-CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 321 QTKFETELRNFVAEK--------KIQD--HVHFVNK-T-LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 321 ~~~~~~~l~~~~~~~--------~l~~--~v~~~g~-~-~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
.. ..+.+.+++... .+.+ +|.|+.. . +-...++.+||++++||+...|++|+.-+=||..|.+.|++
T Consensus 568 y~-~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGt 646 (796)
T 2c4m_A 568 YV-RAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGT 646 (796)
T ss_dssp CH-HHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEE
T ss_pred HH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEec
Confidence 43 233333333222 3556 7888864 3 44556789999999999866899999999999999999999
Q ss_pred CCCCcceeeee--CCceeeecCCCCChHHHHHH---HHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011954 389 AAGGTMEIVVN--GTTGLLHPTGKEGVTPLANN---IVKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQ 463 (474)
Q Consensus 389 ~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~---i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 463 (474)
--|...|+.+. .+||++|....++++++-.. ....-.+++ ++++-+++ +...|||+.- .+|.++|++++.
T Consensus 647 LDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~---~~g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 647 MDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDAL---DNGTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp SSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTT---TSSSSCCTTC-CHHHHHHHHHHS
T ss_pred cCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHH---HcCCCCCCCH-HHHHHHHHHHHh
Confidence 88877776543 46999998743226666542 222223442 33332322 2356999776 779999999874
No 48
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.44 E-value=8.4e-12 Score=126.47 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=134.0
Q ss_pred ccccccHHHHHH-hHHHHhcCCCCCeEEEeCCCCcccc----chhhh----------------------------hH---
Q 011954 208 IDSYTTAEYWKN-RTRERLGIRMPETYVVHLGNSKDLM----DIAED----------------------------SV--- 251 (474)
Q Consensus 208 ~~s~~~~~~~~~-~~~~~~~~~~~ki~vi~ngvd~~~~----~~~~~----------------------------~~--- 251 (474)
.+|...++..+. .+...+...+.++.-|-||||...+ .|.-. ..
T Consensus 443 gVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~ 522 (824)
T 2gj4_A 443 GVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRD 522 (824)
T ss_dssp ESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHH
T ss_pred eEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHH
Confidence 344444444432 2222334456789999999998887 33211 11
Q ss_pred ---HHHHhHHH----HHHhcCCC--CCCEEEEEecccccCcchHHH-HHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC
Q 011954 252 ---ARRVLREH----VRESLGVR--DDDLLFAIINSVSRGKGQDLF-LHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ 321 (474)
Q Consensus 252 ---~~~~~~~~----~r~~~~~~--~~~~~i~~vgrl~~~Kg~~~l-l~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~ 321 (474)
.+...+.. +++..|++ ++.+.++++.|++.+||++++ +..+.++.+...+......+.++++.|.+.+..
T Consensus 523 ~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y 602 (824)
T 2gj4_A 523 VAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGY 602 (824)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhH
Confidence 11222233 56667764 567999999999999999998 888887753332211011168999999986554
Q ss_pred chHHHH----HHHHHHHc----CCCC--eEEEec-CC-CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 322 TKFETE----LRNFVAEK----KIQD--HVHFVN-KT-LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 322 ~~~~~~----l~~~~~~~----~l~~--~v~~~g-~~-~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
. ..+. +.+.++.. .+.+ +|.|+. +. +-...++.+||++++||+...|++|+.-+=||..|.+.|++-
T Consensus 603 ~-~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtl 681 (824)
T 2gj4_A 603 H-MAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTM 681 (824)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECS
T ss_pred H-HHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEe
Confidence 3 2222 44444433 2245 788886 43 444567899999999998668999999999999999999998
Q ss_pred CCCcceeee--eCCceeeecCC
Q 011954 390 AGGTMEIVV--NGTTGLLHPTG 409 (474)
Q Consensus 390 ~~g~~e~v~--~~~~G~l~~~~ 409 (474)
-|...|+.+ .++||++|...
T Consensus 682 DGanvEi~e~vG~~Ngf~FG~~ 703 (824)
T 2gj4_A 682 DGANVEMAEEAGEENFFIFGMR 703 (824)
T ss_dssp CTTHHHHHHHHCGGGSEECSCC
T ss_pred cCccchhhhccCCCCEEEeCCc
Confidence 787777653 45689999764
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.43 E-value=6e-12 Score=122.31 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=101.5
Q ss_pred CCCEEEEEecccccCcc-hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 268 DDDLLFAIINSVSRGKG-QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+...++++.|++...++ .+.+.+++..+.+ .+..+++.+.+.... ....+++++.+.++
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~ 295 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD---------VDAEFVLTLGGGDLA-----------LLGELPANVRVVEW 295 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG---------SSSEEEEECCTTCCC-----------CCCCCCTTEEEECC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc---------cCceEEEEecCcccc-----------ccccCCCCEEEEee
Confidence 44567777888766443 3444444433321 456777666543111 11245678999998
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (474)
. ...++|..+|++| ..+...+++|||++|+|+|+....+ ..+.+.+...|+.++.. +..+++|.+
T Consensus 296 ~-p~~~lL~~~~~~v------~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~----~~~~~al~~ 364 (400)
T 4amg_A 296 I-PLGALLETCDAII------HHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG----SLGAEQCRR 364 (400)
T ss_dssp C-CHHHHHTTCSEEE------ECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT----TCSHHHHHH
T ss_pred c-CHHHHhhhhhhee------ccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC----CchHHHHHH
Confidence 7 5778999999998 3445679999999999999976554 33445455577777654 456889999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011954 423 LATHVERRLTMGKKGYERVKDRFLEHHMSQRIALV 457 (474)
Q Consensus 423 ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 457 (474)
+++|++.+++..+.+.+. .+.=+....++.++++
T Consensus 365 lL~d~~~r~~a~~l~~~~-~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 365 LLDDAGLREAALRVRQEM-SEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHCHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHh
Confidence 999999887776655543 3434666666655543
No 50
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.42 E-value=1.9e-11 Score=119.36 Aligned_cols=158 Identities=8% Similarity=-0.008 Sum_probs=109.2
Q ss_pred CCEEEEEeccc-ccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEE-cCCCCcCchHHHHHHHHHHHcCCCCeEEEecC
Q 011954 269 DDLLFAIINSV-SRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVV-GSDMNAQTKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 269 ~~~~i~~vgrl-~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
+..++++.|++ ...+..+.++++++++ +.+++++ |.+.. . ..++++++.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~-----~--------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADL-----V--------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTC-----C--------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCcc-----c--------ccCCCCCEEEeCc
Confidence 35678888998 4777778888888643 3455554 76531 1 0234568999999
Q ss_pred CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHH
Q 011954 347 TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVK 422 (474)
Q Consensus 347 ~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (474)
..+ .++|..||++|.. +...+++|||++|+|+|+....+ ..+.+.+...|+.++..+.+.++++++|.+
T Consensus 293 ~~~-~~~l~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHH------GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALAT 365 (415)
T ss_dssp CCH-HHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CCh-HHHHhhCCEEEeC------CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHH
Confidence 865 5788999999953 33579999999999999997654 344555667888887653348999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011954 423 LATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVLREVLQY 464 (474)
Q Consensus 423 ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 464 (474)
+ +|++.++++.+.+++ +....-+++..+.+++++..
T Consensus 366 l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 366 A-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp H-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHTC
T ss_pred H-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHhc
Confidence 9 998877776665554 33345555566666666554
No 51
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=108.74 Aligned_cols=135 Identities=7% Similarity=0.055 Sum_probs=100.2
Q ss_pred CCCEEEEEecccc---cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEe
Q 011954 268 DDDLLFAIINSVS---RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFV 344 (474)
Q Consensus 268 ~~~~~i~~vgrl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~ 344 (474)
+...+++++|++. +.|.+..+++++.+ .+.++++++++... + +++++|++.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~~~~-----~---------~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQ------------IPQKVLWRFDGNKP-----D---------TLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTT------------SSSEEEEECCSSCC-----T---------TCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHh------------CCCeEEEEECCcCc-----c---------cCCCcEEEe
Confidence 4467888999985 56777777777743 24678777765411 0 245789999
Q ss_pred cCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHH
Q 011954 345 NKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLAN 418 (474)
Q Consensus 345 g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (474)
|+..+ .+++ ..||++|.. +.+.+++|||++|+|+|+.+..+ ..+.+.+...|++++..+.+++++++
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~------~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITH------GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHH
T ss_pred cCCCH-HHHhcCCCcCEEEEc------CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHH
Confidence 99855 5666 899999953 34689999999999999998753 35566677899999876333899999
Q ss_pred HHHHHhhCHHHHHHHHH
Q 011954 419 NIVKLATHVERRLTMGK 435 (474)
Q Consensus 419 ~i~~ll~~~~~~~~~~~ 435 (474)
+|.++++|++.++++.+
T Consensus 147 ~i~~ll~~~~~~~~a~~ 163 (170)
T 2o6l_A 147 ALKRVINDPSYKENVMK 163 (170)
T ss_dssp HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 99999999875554433
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.33 E-value=1e-10 Score=114.27 Aligned_cols=157 Identities=10% Similarity=0.041 Sum_probs=104.9
Q ss_pred CCEEEEEecccc---cCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEE-cCCCCcCchHHHHHHHHHHHcCCCCeEEEe
Q 011954 269 DDLLFAIINSVS---RGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVV-GSDMNAQTKFETELRNFVAEKKIQDHVHFV 344 (474)
Q Consensus 269 ~~~~i~~vgrl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~ 344 (474)
+..++++.|+.. ..+..+.+++++.++ +.+++++ |.+. .. . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~-----~~--~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ------------GRRVILSRGWTE-----LV--L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT------------TCCEEEECTTTT-----CC--C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC------------CCeEEEEeCCcc-----cc--c------cCCCCCEEEe
Confidence 356777889875 355566666666532 3566665 7652 10 0 2345789999
Q ss_pred cCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHH
Q 011954 345 NKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 345 g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
++.. ..++|..||++|. .+...+++||+++|+|+|+....+ ..+.+.+...|+.++..+.+.++++++|
T Consensus 292 ~~~~-~~~ll~~~d~~v~------~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 364 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIH------HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAAL 364 (416)
T ss_dssp SSCC-HHHHGGGSSEEEE------CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHH
T ss_pred ccCC-hHHHhccCCEEEe------cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHH
Confidence 9985 6889999999994 344679999999999999987643 3334555668888875433389999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhh
Q 011954 421 VKLATHVERRLTMGKKGYERVKDRFLEHHMSQRIALVL-REVLQY 464 (474)
Q Consensus 421 ~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~-~~~~~~ 464 (474)
.++ +|++.++++++.+++.. ...-. +..+.+ ++++..
T Consensus 365 ~~l-~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~i~e~~~~~ 402 (416)
T 1rrv_A 365 TTV-LAPETRARAEAVAGMVL-----TDGAA-AAADLVLAAVGRE 402 (416)
T ss_dssp HHH-TSHHHHHHHHHHTTTCC-----CCHHH-HHHHHHHHHHHC-
T ss_pred HHh-hCHHHHHHHHHHHHHHh-----hcCcH-HHHHHHHHHHhcc
Confidence 999 99887777766554322 22222 444555 555544
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=7.2e-10 Score=114.91 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=144.3
Q ss_pred HHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-C
Q 011954 261 RESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-D 339 (474)
Q Consensus 261 r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~ 339 (474)
|+.+|++++.++++++.++ .|=.+.+++++.++++ +.|+.+|++..... .....+++.+++.|+. +
T Consensus 514 R~~~gLp~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~-------~vP~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~~ 580 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQL--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEPNIQQYAQNMGLPQN 580 (723)
T ss_dssp GGGGTCCTTSEEEECCSCG--GGCCHHHHHHHHHHHH-------HCSSEEEEEEETTG----GGHHHHHHHHHHTTCCGG
T ss_pred hhhcCCCCCCEEEEeCCcc--ccCCHHHHHHHHHHHH-------hCCCCeEEEEeCcH----HHHHHHHHHHHhcCCCcC
Confidence 6778999999998888765 5667889999999888 45999999887653 3567889999999985 6
Q ss_pred eEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcce-----eeee-CCceeeecCCCC
Q 011954 340 HVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTME-----IVVN-GTTGLLHPTGKE 411 (474)
Q Consensus 340 ~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e-----~v~~-~~~G~l~~~~d~ 411 (474)
+|+|.+.. ++....|..+|+++=|-- -+.+.+..||+.+|+|||+-....... ++.. |-.-+++. +
T Consensus 581 r~~f~~~~~~~~~l~~~~~~Di~LDt~p---~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~- 654 (723)
T 4gyw_A 581 RIIFSPVAPKEEHVRRGQLADVCLDTPL---CNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--N- 654 (723)
T ss_dssp GEEEEECCCHHHHHHHGGGCSEEECCSS---SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--S-
T ss_pred eEEECCCCCHHHHHHHhCCCeEEeCCCC---cCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--C-
Confidence 79999864 556677899999998764 466899999999999999864221111 1100 11122332 3
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhhhhc
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGYERVKD--RFLEHHMSQRIALVLREVLQYAKI 467 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~~~~~~~~~~~ 467 (474)
.++..+.-.++.+|++.+.++++.-++.... -|+.+.+++.+++.|+++.++...
T Consensus 655 -~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~ 711 (723)
T 4gyw_A 655 -RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAA 711 (723)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999888777655 599999999999999999886543
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.60 E-value=5.7e-06 Score=75.05 Aligned_cols=94 Identities=7% Similarity=0.068 Sum_probs=65.7
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT 349 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (474)
+.++++.|......-...+++++.. ..+ -.+|.|.+. ...+++++..++. .++.+.++.++
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~-----------~~~-i~vv~G~~~----~~~~~l~~~~~~~---~~v~v~~~~~~ 218 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPK-----------TKI-ISIATSSSN----PNLKKLQKFAKLH---NNIRLFIDHEN 218 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCT-----------TSC-EEEEECTTC----TTHHHHHHHHHTC---SSEEEEESCSC
T ss_pred CeEEEEECCCchhhHHHHHHHHhhc-----------CCC-EEEEECCCc----hHHHHHHHHHhhC---CCEEEEeCHHH
Confidence 3566677876544333344444421 123 446778764 2567777766653 47999999999
Q ss_pred hHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 350 VSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 350 ~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
+.++|+.||++|.+ .|.++.|++++|+|.|.-.
T Consensus 219 m~~~m~~aDlvI~~-------gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 219 IAKLMNESNKLIIS-------ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp HHHHHHTEEEEEEE-------SSHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHCCEEEEC-------CcHHHHHHHHcCCCEEEEe
Confidence 99999999999952 3589999999999998865
No 55
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.08 E-value=0.00015 Score=75.60 Aligned_cols=294 Identities=12% Similarity=0.115 Sum_probs=154.3
Q ss_pred cCEEEEEecC-CCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcC
Q 011954 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALN 150 (474)
Q Consensus 74 ~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (474)
..+|+|.+.. -..++-++.+.+ +|.+. ++++.+++...... ....++.++.......+.....
T Consensus 352 ~~~ivf~s~~g~~~~~n~~~i~~---~l~~~~~~~~~~w~~~~~~~~-----------~~~~~~~~v~~~s~~~~~~l~~ 417 (729)
T 3l7i_A 352 PKTIVFESFGGKNYSDSPKYIYE---YMQKYYPNYRYIWSFKNPDKN-----------VVPGSAEKVKRNSAEYYQAYSE 417 (729)
T ss_dssp EEEEEEEBGGGTBSCHHHHHHHH---HHHHHCTTSEEEEEESSGGGC-----------CCCSSCEEEETTSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCHHHHHH---HHHHhCCCceEEEEEcCcccc-----------cCCCCcEEEEECCHHHHHHHhc
Confidence 3456766643 234555555544 44433 47888888543110 0123444444444444444455
Q ss_pred CCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchh-------------h----hhhccccccccccccccc
Q 011954 151 ADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKL-------------E----YVKHLPFVAGAMIDSYTT 213 (474)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-------------~----~~~~~~~~~~~~~~s~~~ 213 (474)
.++++.++..+..+ .......++.+.|+........ . ........+..++.+...
T Consensus 418 a~~~v~n~~~~~~~--------~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~ 489 (729)
T 3l7i_A 418 ASHWVSNARTPLYL--------NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYS 489 (729)
T ss_dssp EEEEEESSCCCTTS--------CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHH
T ss_pred CcEEEECCCCcccc--------ccCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHH
Confidence 66777766443211 1112356778888752111100 0 111123345555555554
Q ss_pred HHHHHHhHHHHhcCCCCCeEEEeCCCCcc--ccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccC----cc---
Q 011954 214 AEYWKNRTRERLGIRMPETYVVHLGNSKD--LMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRG----KG--- 284 (474)
Q Consensus 214 ~~~~~~~~~~~~~~~~~ki~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~----Kg--- 284 (474)
.+. +.+.++++..+ ++..|.... .+.... ....++.+++++++++++.+|+|+-.+... +|
T Consensus 490 ~~~----~~~~f~~~~~~--i~~~G~PR~D~l~~~~~----~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~ 559 (729)
T 3l7i_A 490 TEI----FRSAFWMDEER--ILEIGYPRNDVLVNRAN----DQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYL 559 (729)
T ss_dssp HHH----HHHHTCCCGGG--EEESCCGGGHHHHHSTT----CHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSC
T ss_pred HHH----HHHHhCCCcce--EEEcCCCchHHHhcccc----hHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccc
Confidence 444 44567776555 555565432 221111 112256789999999999999999765442 11
Q ss_pred --hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEE
Q 011954 285 --QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQ 362 (474)
Q Consensus 285 --~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ 362 (474)
...-++.+.+ .++ +++.+++-.-. .. .+.....+..+.+.-.....++.++|..||++|.
T Consensus 560 ~~~~~~~~~l~~---~l~------~~~~li~r~Hp------~~---~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lIT 621 (729)
T 3l7i_A 560 FELKIDLDNLYK---ELG------DDYVILLRMHY------LI---SNALDLSGYENFAIDVSNYNDVSELFLISDCLIT 621 (729)
T ss_dssp CCCTTCHHHHHH---HHT------TTEEEEECCCH------HH---HTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEE
T ss_pred cchhhHHHHHHH---HcC------CCeEEEEecCc------ch---hccccccccCCcEEeCCCCcCHHHHHHHhCEEEe
Confidence 1112233332 221 56776665432 11 1111112234556666666799999999999993
Q ss_pred cCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeeeCCceeeecCCC-------CChHHHHHHHHHHhhC
Q 011954 363 NSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPTGK-------EGVTPLANNIVKLATH 426 (474)
Q Consensus 363 ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d-------~~~~~la~~i~~ll~~ 426 (474)
+ ++-++.|++..++|||.... ...+.. ++..|+.++..+ .+.++|.++|......
T Consensus 622 ------D-ySSv~fD~~~l~kPiif~~~-D~~~Y~-~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 622 ------D-YSSVMFDYGILKRPQFFFAY-DIDKYD-KGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLDKV 683 (729)
T ss_dssp ------S-SCTHHHHHGGGCCCEEEECT-TTTTTT-SSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHHHH
T ss_pred ------e-chHHHHhHHhhCCCEEEecC-CHHHHh-hccCCcccChhHhCCCCeECCHHHHHHHHhhhhcc
Confidence 2 45699999999999997731 111211 112333333211 1278999999877653
No 56
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=98.06 E-value=0.00019 Score=72.97 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=104.8
Q ss_pred HHHhc-C--CC-----CCCEEEEEecccccCcchHH-HHHHHHHHHHHHHH------hcc---CCCcEEEEEEcCCCCcC
Q 011954 260 VRESL-G--VR-----DDDLLFAIINSVSRGKGQDL-FLHSFYESLQLIRE------KKL---QVPSMHAVVVGSDMNAQ 321 (474)
Q Consensus 260 ~r~~~-~--~~-----~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~~~------~~~---~~~~~~l~i~G~g~~~~ 321 (474)
+++.. | ++ ++.+.++++-|+..+|.+.+ ++..+.++.+...+ ... +..+.++++.|...+.+
T Consensus 582 i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y 661 (879)
T 1ygp_A 582 IKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGY 661 (879)
T ss_dssp HHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTC
T ss_pred HHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCc
Confidence 45566 5 45 56799999999999999999 67777665432222 100 02468888888765444
Q ss_pred chHHHHHHHHHHHc--------CCCC--eEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 322 TKFETELRNFVAEK--------KIQD--HVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 322 ~~~~~~l~~~~~~~--------~l~~--~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
. ....+.+++... .+.+ +|.|+... +-...++.+||+-.+.|+...|..|..=+=+|.-|.+.|+|-
T Consensus 662 ~-~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtl 740 (879)
T 1ygp_A 662 Y-MAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTV 740 (879)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEES
T ss_pred H-HHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecc
Confidence 3 444554444433 2344 79999853 555668899999999888778999999999999999999998
Q ss_pred CCCcceeeee--CCceeeec
Q 011954 390 AGGTMEIVVN--GTTGLLHP 407 (474)
Q Consensus 390 ~~g~~e~v~~--~~~G~l~~ 407 (474)
-|...|+.++ ++|+++|-
T Consensus 741 DGanvEi~e~vG~eN~fiFG 760 (879)
T 1ygp_A 741 DGANVEITREIGEDNVFLFG 760 (879)
T ss_dssp CTHHHHHHHHHCGGGSEEES
T ss_pred cchhHHHHHHcCcccEEEcc
Confidence 8887777644 44777664
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.84 E-value=0.00059 Score=64.27 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred HHHHHhcCCCCC-CEEEEEecccccCcch--HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHH
Q 011954 258 EHVRESLGVRDD-DLLFAIINSVSRGKGQ--DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAE 334 (474)
Q Consensus 258 ~~~r~~~~~~~~-~~~i~~vgrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~ 334 (474)
+.+.+..|++.+ +++++..|.-.+.|.+ +.+.+.+..+.+ .+++++++|+.. ..+..++..+.
T Consensus 173 ~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~~-----e~~~~~~i~~~ 238 (349)
T 3tov_A 173 QEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGPM-----DLEMVQPVVEQ 238 (349)
T ss_dssp HHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCTT-----THHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCcc-----hHHHHHHHHHh
Confidence 344556677644 4666667765556655 356666655543 256788888653 44555556555
Q ss_pred cCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 335 KKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 335 ~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.+. ..+.+.|.. .++..+++.||++|.+- .|..-+ |.++|+|+|+--
T Consensus 239 ~~~-~~~~l~g~~sl~e~~ali~~a~~~i~~D------sG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 239 MET-KPIVATGKFQLGPLAAAMNRCNLLITND------SGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp CSS-CCEECTTCCCHHHHHHHHHTCSEEEEES------SHHHHH-HHTTTCCEEEEC
T ss_pred ccc-ccEEeeCCCCHHHHHHHHHhCCEEEECC------CCHHHH-HHhcCCCEEEEE
Confidence 542 345666643 67899999999999653 244555 999999999863
No 58
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.73 E-value=8.3e-05 Score=72.87 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=69.5
Q ss_pred CeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeC-CceeeecCCCC
Q 011954 339 DHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNG-TTGLLHPTGKE 411 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~~~d~ 411 (474)
+++.+.++..+. ++|. ++|+|| .-+...+++||+++|+|+|+-...+- ...+.+. ..|+.++.++-
T Consensus 325 ~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQA-EVLAHEAVGAFV------THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCHH-HHhcCCcCCEEE------ecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 578888987664 6788 678888 44556799999999999999875432 2334445 67877764433
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGYERVK 442 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 442 (474)
+.++++++|.++++|++ .++|++++++..+
T Consensus 398 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~ 427 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-GKKLRENLRALRE 427 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-HHHHHHHHHHHHH
Confidence 38999999999999876 5666666665443
No 59
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.60 E-value=0.0028 Score=58.97 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=77.3
Q ss_pred cCCCCCCEEEEEecccccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE
Q 011954 264 LGVRDDDLLFAIINSVSRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV 341 (474)
Q Consensus 264 ~~~~~~~~~i~~vgrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (474)
.+...++.+++..|.-.+.|... .+.+.+..+ .+ .++++++.++++ ...+..++..+..+ ++
T Consensus 173 ~~~~~~~~i~l~pga~~~~k~wp~~~~~~l~~~L----~~-----~~~~vvl~~g~~----~e~~~~~~i~~~~~---~~ 236 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLL----AD-----SGIRIKLPWGAP----HEEERAKRLAEGFA---YV 236 (326)
T ss_dssp CCTTTTSEEEEECCCSSGGGSCCHHHHHHHHHHT----TT-----TCCEEEECCSSH----HHHHHHHHHHTTCT---TE
T ss_pred ccccCCCEEEEEeCCCCccccCCHHHHHHHHHHH----HH-----CCCcEEEecCCH----HHHHHHHHHHhhCC---cc
Confidence 34445567777777656667665 444444444 22 467888874342 12333344443332 35
Q ss_pred EEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC----------cceeeeeCCceeeecCC
Q 011954 342 HFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG----------TMEIVVNGTTGLLHPTG 409 (474)
Q Consensus 342 ~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g----------~~e~v~~~~~G~l~~~~ 409 (474)
.+.|.. .++..+++.||++|..-. |..-+ |.|+|+|+|+--.+. ...++. +....+ ..-
T Consensus 237 ~l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~-~~~~cm-~~I 307 (326)
T 2gt1_A 237 EVLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCR-APGNEL-SQL 307 (326)
T ss_dssp EECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEE-CGGGCG-GGC
T ss_pred cccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEec-CCcccc-cCC
Confidence 666743 788899999999996532 44555 777999998752111 111221 111111 112
Q ss_pred CCChHHHHHHHHHHhhC
Q 011954 410 KEGVTPLANNIVKLATH 426 (474)
Q Consensus 410 d~~~~~la~~i~~ll~~ 426 (474)
+ +++..+++.++++.
T Consensus 308 ~--~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 308 T--ANAVKQFIEENAEK 322 (326)
T ss_dssp C--HHHHHHHHHHTTTT
T ss_pred C--HHHHHHHHHHHHHH
Confidence 3 78888888887753
No 60
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.53 E-value=0.0011 Score=64.56 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=67.5
Q ss_pred CeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeeeeC-CceeeecCCCCCh
Q 011954 339 DHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVVNG-TTGLLHPTGKEGV 413 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~~~d~~~ 413 (474)
+++.+.++..+ ..++..+++-++-++ +.-.+++||+++|+|+|+-...+- ...+.+. ..|+.++.++-+.
T Consensus 327 ~~~~vv~w~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~ 401 (454)
T 3hbf_A 327 TKGKIVAWAPQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTK 401 (454)
T ss_dssp TTEEEESSCCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCH
T ss_pred CceEEEeeCCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCH
Confidence 57888898765 588999995444443 345699999999999999865431 2234443 6777776544348
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 011954 414 TPLANNIVKLATHVERRLTMGKKGYERV 441 (474)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~~~~~~ 441 (474)
+++.++|.++++++ ..++|++++++..
T Consensus 402 ~~l~~av~~ll~~~-~~~~~r~~a~~l~ 428 (454)
T 3hbf_A 402 ESIKKALELTMSSE-KGGIMRQKIVKLK 428 (454)
T ss_dssp HHHHHHHHHHHSSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-hHHHHHHHHHHHH
Confidence 99999999999874 2455555555433
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.51 E-value=0.0013 Score=64.99 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=68.1
Q ss_pred CeEEEecCCCChHHHHhcCCE--EEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----ceeee-eCCceeeecCCCC
Q 011954 339 DHVHFVNKTLTVSPYLASIDV--LVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEIVV-NGTTGLLHPTGKE 411 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~~adv--~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~v~-~~~~G~l~~~~d~ 411 (474)
+++.+.++..++ ++|+.+++ || + -|...+++||+++|+|+|+-...+- ...+. +-..|+.++ .+-
T Consensus 353 ~~~~v~~~~pq~-~~L~h~~~~~~v--t----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~~ 424 (482)
T 2pq6_A 353 DRGLIASWCPQD-KVLNHPSIGGFL--T----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TNV 424 (482)
T ss_dssp TTEEEESCCCHH-HHHTSTTEEEEE--E----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SSC
T ss_pred CCEEEEeecCHH-HHhcCCCCCEEE--e----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CCC
Confidence 588999988665 58877666 66 3 3456799999999999999876532 22232 445777776 333
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGYERVK 442 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 442 (474)
+.+++.++|.++++|++ .++|++++++...
T Consensus 425 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~ 454 (482)
T 2pq6_A 425 KREELAKLINEVIAGDK-GKKMKQKAMELKK 454 (482)
T ss_dssp CHHHHHHHHHHHHTSHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 38999999999999886 4667777665543
No 62
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.28 E-value=0.0012 Score=62.13 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHHHHHhcCCC-CCCEEEEEecc-cccCcchH--HHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHH
Q 011954 257 REHVRESLGVR-DDDLLFAIINS-VSRGKGQD--LFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFV 332 (474)
Q Consensus 257 ~~~~r~~~~~~-~~~~~i~~vgr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~ 332 (474)
.+++++.++++ +++++++..|. ..+.|.+. .+.+++..|.+ .+++++++|+.. ..+..+++.
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~~-----e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSAK-----DHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCGG-----GHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeChh-----hHHHHHHHH
Confidence 35567778876 44567777776 55667665 66666666644 368889988652 333344443
Q ss_pred HHcCC---CCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc
Q 011954 333 AEKKI---QDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGT 388 (474)
Q Consensus 333 ~~~~l---~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s 388 (474)
+..+- ...+.+.|.. .++..+++.||++|.... |..-+ |.|+|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEE
Confidence 33220 1234566753 688999999999997653 33333 99999999875
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.20 E-value=0.00021 Score=62.03 Aligned_cols=73 Identities=7% Similarity=-0.043 Sum_probs=53.4
Q ss_pred eEEEecCCCChHHHHh-cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc--------ceeeeeCCceeeecCCC
Q 011954 340 HVHFVNKTLTVSPYLA-SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT--------MEIVVNGTTGLLHPTGK 410 (474)
Q Consensus 340 ~v~~~g~~~~~~~~~~-~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d 410 (474)
++...++.+++..+|. .||++| .-+...+++|++++|+|.|.-..+.. .+.+.+...++++ +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvI------shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVI------SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEE------ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEE------ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 6777788899999999 999999 44567899999999999988765431 1123233345554 3
Q ss_pred CChHHHHHHHHHH
Q 011954 411 EGVTPLANNIVKL 423 (474)
Q Consensus 411 ~~~~~la~~i~~l 423 (474)
++.|+++|.++
T Consensus 186 --~~~L~~~i~~l 196 (224)
T 2jzc_A 186 --PTETGLIAGLR 196 (224)
T ss_dssp --SCTTTHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 56788888776
No 64
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.14 E-value=0.0079 Score=58.87 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=60.6
Q ss_pred CeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----cee-eeeCCceeee-c---
Q 011954 339 DHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEI-VVNGTTGLLH-P--- 407 (474)
Q Consensus 339 ~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~-v~~~~~G~l~-~--- 407 (474)
+++.+.++..+. .+|. ++|+|| .-+...+++||+++|+|+|+-...+- ... ++.-..|+.+ .
T Consensus 332 ~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~ 404 (463)
T 2acv_A 332 GKGMICGWAPQV-EVLAHKAIGGFV------SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404 (463)
T ss_dssp CSEEEESSCCHH-HHHHSTTEEEEE------ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC
T ss_pred CCEEEEccCCHH-HHhCCCccCeEE------ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC
Confidence 478888887665 5675 678888 34456799999999999999875432 223 3455678877 2
Q ss_pred CC--CCChHHHHHHHHHHhh-CHHHHHH
Q 011954 408 TG--KEGVTPLANNIVKLAT-HVERRLT 432 (474)
Q Consensus 408 ~~--d~~~~~la~~i~~ll~-~~~~~~~ 432 (474)
.+ ..+.+++.++|.++++ +++.+++
T Consensus 405 ~~~~~~~~~~l~~ai~~ll~~~~~~r~~ 432 (463)
T 2acv_A 405 KGSDVVAAEEIEKGLKDLMDKDSIVHKK 432 (463)
T ss_dssp TTCCCCCHHHHHHHHHHHTCTTCTHHHH
T ss_pred CCCccccHHHHHHHHHHHHhccHHHHHH
Confidence 22 2238999999999997 3444433
No 65
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.05 E-value=0.017 Score=56.85 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=55.5
Q ss_pred EEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc----cee-eeeCCceeeecCC---CCC
Q 011954 341 VHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT----MEI-VVNGTTGLLHPTG---KEG 412 (474)
Q Consensus 341 v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~----~e~-v~~~~~G~l~~~~---d~~ 412 (474)
+.+.++..+. ++++.+++-++-++ |.-.+++||+++|+|+|+-...+- ... ++.-..|+.++.. ..+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4555677554 89999996444343 345699999999999999875431 222 2345577776543 223
Q ss_pred hHHHHHHHHHHhh
Q 011954 413 VTPLANNIVKLAT 425 (474)
Q Consensus 413 ~~~la~~i~~ll~ 425 (474)
.++++++|.++++
T Consensus 416 ~~~l~~av~~vl~ 428 (480)
T 2vch_A 416 REEVARVVKGLME 428 (480)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 8999999999998
No 66
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=94.05 E-value=2.2 Score=35.44 Aligned_cols=337 Identities=15% Similarity=0.113 Sum_probs=170.3
Q ss_pred cCEEEEEecCC-CCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcH-HHHhhhcCC
Q 011954 74 SKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGE-KAINTALNA 151 (474)
Q Consensus 74 ~~kIl~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (474)
.|+|+++.... ...|...+..+.-..+.++||+|+++......... . -...-+...++++-.+.. +.+..-...
T Consensus 1 smricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftr-t---sshdhksfsipvilakeydkalklvndc 76 (401)
T 1xv5_A 1 SMRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTR-T---SSHDHKSFSIPVILAKEYDKALKLVNDC 76 (401)
T ss_dssp CCEEEEEETTCCCSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTT-T---TSSSCTTTCEEECTTTCHHHHHHHHTSC
T ss_pred CceEEEEeeccccccCceeeehhhhhhhhcCCcEEEEEEeccccccc-c---ccccCccccceeEehhhhHHHhhhhccC
Confidence 37888887653 33566788888888999999999998754332111 0 011123334455433322 233334789
Q ss_pred CEEEEcccchhhHHhH-------Hhhhcccccccceeeeeeccccccch--hhhhhcccccccccccccccHHHHHHhHH
Q 011954 152 DLVVLNTAVAGKWLDG-------VLKDKVSQVLPKVLWWIHEMRGHYFK--LEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 152 DiV~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
|++++++..+...-.. ++....|. .+++.+-|+-...... ...-...++++.++..+.. .++-+-...
T Consensus 77 diliinsvpatsvqeatinnykklldnikps--irvvvyqhdhsvlslrrnlgleetvrradvifshsdn-gdfnkvlmk 153 (401)
T 1xv5_A 77 DILIINSVPATSVQEATINNYKKLLDNIKPS--IRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDN-GDFNKVLMK 153 (401)
T ss_dssp SEEEEEECCBTTSCHHHHHHHHHHHHHSCTT--SEEEEEECCCSHHHHTTBSSHHHHHHHCSEEEESCTT-SHHHHTHHH
T ss_pred cEEEEccCccchhHHHHHhhHHHHHhcCCCc--eEEEEEeccchhhhhhhhcChHHhhhhhceEEecCCC-CcHHHHHHH
Confidence 9999887433221111 11112222 3556666643211111 1122223445555444332 222222222
Q ss_pred HHhcCCC------CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCC---EEEEEecccccCcchHHHHHHHH
Q 011954 223 ERLGIRM------PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDD---LLFAIINSVSRGKGQDLFLHSFY 293 (474)
Q Consensus 223 ~~~~~~~------~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~i~~vgrl~~~Kg~~~ll~a~~ 293 (474)
+.|+-.. +..-.++| |.|.-+ .-.+|..+=-+... -+=-++||-..+||.-.+.+.-.
T Consensus 154 ewypetvslfddieeaptvyn------fqppmd-------ivkvrstywkdvseinmninrwigrtttwkgfyqmfdfhe 220 (401)
T 1xv5_A 154 EWYPETVSLFDDIEEAPTVYN------FQPPMD-------IVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHE 220 (401)
T ss_dssp HHSCSSCCSSSCCCCCCCEEE------CCCCBC-------HHHHHHHHCCCGGGCEEEEEEEECCSCGGGCHHHHHHHHH
T ss_pred hhccchhhhhcchhhCCceec------cCCCce-------eeeeehhhhccHHHhhcchhhhhcccchhHhHHHHhhHHH
Confidence 2232110 11112222 222211 11233332211111 23347899999999988888776
Q ss_pred HHHHHHHHhccCCCc-EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--------------------C-CChH
Q 011954 294 ESLQLIREKKLQVPS-MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--------------------T-LTVS 351 (474)
Q Consensus 294 ~l~~~~~~~~~~~~~-~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--------------------~-~~~~ 351 (474)
++.+ |. -.-++-|-. +.+ .+. .+++-|++ ..+.|. . .++.
T Consensus 221 kflk---------pagkstvmegle--rsp----afi-aikekgip--yeyygnreidkmnlapnqpaqildcyinseml 282 (401)
T 1xv5_A 221 KFLK---------PAGKSTVMEGLE--RSP----AFI-AIKEKGIP--YEYYGNREIDKMNLAPNQPAQILDCYINSEML 282 (401)
T ss_dssp HTTT---------TTTCEEEEECCC--CSH----HHH-HHHHTTCC--EEEECGGGGGGCCCSSSCCEEEESCCCHHHHH
T ss_pred HhcC---------ccchhhhhhhhh--cCC----ceE-EEcccCCc--hhhcCcchhhhhcCCCCCcchhhhheecHHHH
Confidence 6544 32 233444432 222 111 23344442 334442 1 3455
Q ss_pred HHHhcCCEEEEcCCCC----CCCCchHHHHHHhcCC-CEEEcCCCCcc-------eeeeeCCcee-eecCCCCChHHHHH
Q 011954 352 PYLASIDVLVQNSQAR----GECFGRITIEAMAFQL-PVLGTAAGGTM-------EIVVNGTTGL-LHPTGKEGVTPLAN 418 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~----~E~~~~~~~EAma~G~-PvI~s~~~g~~-------e~v~~~~~G~-l~~~~d~~~~~la~ 418 (474)
+-++.+......|.-. ....-.+-+|--|||. ||.--..|..- -+..+ +.|+ .++.+| .++--+
T Consensus 283 ermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltsh-dsgiiwfdend--mestfe 359 (401)
T 1xv5_A 283 ERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSH-DSGIIWFDEND--MESTFE 359 (401)
T ss_dssp HHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGS-CCSCEEECTTC--HHHHHH
T ss_pred HHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCccccc-CCceEEecCCc--hHHHHH
Confidence 5566666655544320 2345678899999997 44433222111 11122 3444 467777 999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011954 419 NIVKLATHVERRLTMGKKGYERVKDRFLEHHMS 451 (474)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~ 451 (474)
.|.++.+|..++.+-++.+++..-++-+..-..
T Consensus 360 rikelssdralydrerekayeflyqhqdssfcf 392 (401)
T 1xv5_A 360 RIKELSSDRALYDREREKAYEFLYQHQDSSFCF 392 (401)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHBHHHHH
T ss_pred HHHHhccchhhhhHHHHHHHHHHHhcccccchh
Confidence 999999999999999999998876654444333
No 67
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=89.86 E-value=0.49 Score=42.35 Aligned_cols=43 Identities=21% Similarity=0.033 Sum_probs=31.5
Q ss_pred ccccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 71 FMKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|++||||+|.....+.+-. ......++.|.+.|++|.++-..
T Consensus 19 ~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 19 YFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp ---CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred hhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 47789999999766665543 45667788999999999998743
No 68
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=88.66 E-value=3.6 Score=31.96 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=73.3
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
...+++|+.+.+ .....++...++.+....+......++....+.. .|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSST
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhccc
Confidence 356788888754 3667788888887764446555554454444433 5787775431 44557777777654
Q ss_pred --CCCEEEcCCCCc----ceeeeeCCceeeecCC-CCChHHHHHHHHHHhh
Q 011954 382 --QLPVLGTAAGGT----MEIVVNGTTGLLHPTG-KEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 --G~PvI~s~~~g~----~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~ 425 (474)
++|+|......- .+.+..|..+++..|. + .++|.++|..+++
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 678876432222 2334567889999998 8 9999999988874
No 69
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=88.40 E-value=3.7 Score=31.46 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=71.9
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh---------cCCEEEEcCCCCCCCCchHHHHHH
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA---------SIDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~---------~adv~v~ps~~~~E~~~~~~~EAm 379 (474)
.+++|+.+.+ .....+.+..+..|....+......++....+. ..|++++-... .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 4677777754 366778888887775446666666555555554 46888875431 344566677665
Q ss_pred h-----cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 380 A-----FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 380 a-----~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
. ..+|+|.- .... ..+....|..+++..|-+ .+++..+|..++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 4 46787654 3222 133344577899999988 9999999988864
No 70
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=87.20 E-value=1.6 Score=38.06 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=29.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
|||||+.+.+... ..-+..|+++|.+.| +|.|+.+.....
T Consensus 1 ~M~ILlTNDDGi~---apGi~aL~~~l~~~g-~V~VVAP~~~~S 40 (251)
T 2phj_A 1 MPTFLLVNDDGYF---SPGINALREALKSLG-RVVVVAPDRNLS 40 (251)
T ss_dssp -CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CCEEEEECCCCCC---CHHHHHHHHHHHhcC-CEEEEecCCCcc
Confidence 4789988875322 245899999999998 999999765443
No 71
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=87.14 E-value=1.4 Score=40.37 Aligned_cols=80 Identities=25% Similarity=0.223 Sum_probs=42.9
Q ss_pred cccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh---------
Q 011954 70 NFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK--------- 140 (474)
Q Consensus 70 ~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 140 (474)
.+|++|||+|+. ...+...+.++|.+.||+|..+..+.+.... ...+...-...+++++...
T Consensus 18 ~~~~~mrIvf~G-------~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~~~~ 88 (329)
T 2bw0_A 18 LYFQSMKIAVIG-------QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQAL 88 (329)
T ss_dssp ---CCCEEEEEC-------CHHHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEEC
T ss_pred ccCCCCEEEEEc-------CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCccccccccc
Confidence 346679999982 3455556678888889998754432211100 0011222344455554332
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
.....++..++|++++-.
T Consensus 89 ~~~~~~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 89 PDVVAKYQALGAELNVLPF 107 (329)
T ss_dssp HHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 223445568999999864
No 72
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=86.46 E-value=3.8 Score=32.18 Aligned_cols=110 Identities=12% Similarity=0.139 Sum_probs=72.3
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh-----------cCCEEEEcCCCCCCCCchHHH
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA-----------SIDVLVQNSQARGECFGRITI 376 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~-----------~adv~v~ps~~~~E~~~~~~~ 376 (474)
..+++|+.+.+ .....+++..++.+....|......++....+. ..|++++-..- .+.-|..++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 45778887764 467778888888876546666665555555552 46777764331 445577777
Q ss_pred HHHhc-----CCCEEEcC-CCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 377 EAMAF-----QLPVLGTA-AGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 377 EAma~-----G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
+.+.. ++|+|... ... ..+....|..+++..|-+ .++|.++|.++.
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 77654 57776543 322 123445577899999988 999999998874
No 73
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=85.78 E-value=18 Score=31.90 Aligned_cols=214 Identities=11% Similarity=0.004 Sum_probs=100.1
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
.+..+|.++.+.....-....+..+.+++.+.|+++.++....+.... ..........++
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--------------------~~~~~~l~~~~v 65 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVRE--------------------REAVGQFFERRV 65 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHH--------------------HHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH--------------------HHHHHHHHHCCC
Confidence 346789999876432222355667777888899999988754321100 001122334689
Q ss_pred CEEEEcccch-hhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCCC
Q 011954 152 DLVVLNTAVA-GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRMP 230 (474)
Q Consensus 152 DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (474)
|.|++..... ...+..+.. ...|++..-..... ..+..+..+.........+.+.+. ...
T Consensus 66 dgiIi~~~~~~~~~~~~~~~-----~~iPvV~~~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~---G~~ 126 (291)
T 3egc_A 66 DGLILAPSEGEHDYLRTELP-----KTFPIVAVNRELRI-----------PGCGAVLSENVRGARTAVEYLIAR---GHT 126 (291)
T ss_dssp SEEEECCCSSCCHHHHHSSC-----TTSCEEEESSCCCC-----------TTCEEEEECHHHHHHHHHHHHHHT---TCC
T ss_pred CEEEEeCCCCChHHHHHhhc-----cCCCEEEEecccCC-----------CCCCEEEECcHHHHHHHHHHHHHc---CCC
Confidence 9888765332 112222111 23455543322211 011222222223333333333322 345
Q ss_pred CeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEE
Q 011954 231 ETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMH 310 (474)
Q Consensus 231 ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (474)
++-++....+..... .+...-.+.-++.+++.+...+ ..+......+...+.+.+ + ++++..
T Consensus 127 ~i~~i~~~~~~~~~~------~R~~gf~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l----~-------~~~~~~ 188 (291)
T 3egc_A 127 RIGAIVGSAGLMTSR------ERLKGFRAAMSAAGLPVRQEWI-AAGGVRADNGRDGAIKVL----T-------GADRPT 188 (291)
T ss_dssp SEEEECSCTTSHHHH------HHHHHHHHHHHHTTCCCCGGGE-EC------CCHHHHHHHH----T-------C-CCCS
T ss_pred EEEEEeCCCCCcCHH------HHHHHHHHHHHHcCCCCCHHHe-EeCCCChhHHHHHHHHHH----h-------CCCCCc
Confidence 676665433211110 0000011223345665433222 345566666665544433 2 236677
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCC
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKT 347 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~ 347 (474)
.+++.++. ....+.+.+++.|+. +.|.+.|+.
T Consensus 189 ai~~~~d~-----~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 189 ALLTSSHR-----ITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp EEEESSHH-----HHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred EEEECCcH-----HHHHHHHHHHHcCCCCCCceEEEEec
Confidence 78877652 444566777777764 788889875
No 74
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=85.74 E-value=3.8 Score=31.71 Aligned_cols=110 Identities=12% Similarity=0.127 Sum_probs=69.2
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh----cCCEEEEcCCCCCCCCchHHHHHHh---c
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA----SIDVLVQNSQARGECFGRITIEAMA---F 381 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~----~adv~v~ps~~~~E~~~~~~~EAma---~ 381 (474)
.+++|+.+.+ .....++....+.+. .+......++....+. ..|++++-... .+.-|..+++.+. .
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 4677777654 356677777777663 4554444444444443 56887775432 4445666665543 3
Q ss_pred CCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 382 QLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 382 G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
.+|+|.- .... ..+.+..|..+++..|-+ .++|..+|..++...
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRK 124 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHH
Confidence 6777654 3222 233455677899999988 999999999988643
No 75
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=85.04 E-value=4.3 Score=31.59 Aligned_cols=110 Identities=7% Similarity=0.138 Sum_probs=70.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
...+++|+.+.+ .....+.......|. .|......++....+. ..|++++-... .+.-|..+++.+..
T Consensus 7 ~~~~iLivd~~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQL----PALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTG----GGGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 457788888764 356677777776664 4554444444444433 36888875431 34456777777664
Q ss_pred --CCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 --QLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 --G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|.- ..... .+.+..|..+++..|-+ .++|..+|..++.
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 127 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLK 127 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 6787654 33322 22345577899999988 9999999998875
No 76
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=84.81 E-value=1.5 Score=38.48 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=28.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
|+|||+.+.+... ..-+..|+++|.+.| +|+|+++.....
T Consensus 1 Mp~ILlTNDDGi~---apGi~~L~~~l~~~g-~V~VvAP~~~~S 40 (251)
T 2wqk_A 1 MPTFLLVNDDGYF---SPGINALREALKSLG-RVVVVAPDRNLS 40 (251)
T ss_dssp -CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CCEEEEEcCCCCC---cHHHHHHHHHHHhCC-CEEEEeeCCCCc
Confidence 5689988875322 145888999999998 699998665443
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=84.66 E-value=8.3 Score=30.23 Aligned_cols=110 Identities=8% Similarity=0.130 Sum_probs=67.6
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQ 382 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G 382 (474)
..+++|+.+.+ .....+.......|. .|......++....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 3 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPD 75 (155)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCC
Confidence 45677787764 356677777777664 4554443333333332 35887764431 3344666666553 46
Q ss_pred CCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 383 LPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+|+|.. .... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEK 121 (155)
T ss_dssp SCEEEEECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHH
Confidence 888754 3222 233344577899999988 99999999998764
No 78
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=84.39 E-value=1.2 Score=37.38 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=30.3
Q ss_pred cccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+||||+++... ++|. ...+..+++.+.+.|++|.++...
T Consensus 3 M~M~kilii~~S--~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYS--RHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECC--SSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred CCcceEEEEEeC--CCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 557799999865 3454 577888899999999999988754
No 79
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=84.38 E-value=11 Score=28.79 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=69.1
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh---cCCEEEEcCCCCCC-CCchHHHHHHh--c
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA---SIDVLVQNSQARGE-CFGRITIEAMA--F 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~---~adv~v~ps~~~~E-~~~~~~~EAma--~ 381 (474)
+.+++|+.+.+ .....+....++.|. .|......++....+. ..|++++-..- .+ .-|..+++.+. .
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSK----FQAKTIANILNKYGY--TVEIALTGEAAVEKVSGGWYPDLILMDIEL-GEGMDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCSEEEEESSC-SSSCCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEecChHHHHHHHhcCCCCCEEEEeccC-CCCCCHHHHHHHHHhCC
Confidence 45778887754 366777777777764 4554444444444443 35888775431 23 45666666554 4
Q ss_pred CCCEEEcC-CCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 QLPVLGTA-AGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|.-. ... ..+....|..+++..|-+ .++|.++|..++.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSAT--EQVLITIVEMALR 123 (140)
T ss_dssp CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 78887643 222 233444577899999988 9999999998875
No 80
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=84.01 E-value=6.3 Score=30.38 Aligned_cols=114 Identities=8% Similarity=-0.041 Sum_probs=71.1
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc-------CCEEEEcCCCCCCCCchHHHHHH
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS-------IDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~-------adv~v~ps~~~~E~~~~~~~EAm 379 (474)
...+++|+.+.+ .....+.......+....+......++....+.. .|++++-..- .+.-|+.+++.+
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDD----IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCH----HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSCHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCCHHHHHHHH
Confidence 456778887753 3556677777766643345555544455555543 6888775432 445567777665
Q ss_pred hc-------CCCEEEcCCCCc----ceeeeeC-CceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 380 AF-------QLPVLGTAAGGT----MEIVVNG-TTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 380 a~-------G~PvI~s~~~g~----~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
.. ..|+|......- .+....+ ..+++..|-+ .++|.++|.+.....
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLT--ANALNNLYNKVLNEG 140 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCC--HHHHHHHHHHHHCC-
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCC--HHHHHHHHHHHHHhc
Confidence 43 567665432221 2233445 7789999998 999999999988754
No 81
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=83.89 E-value=8.8 Score=29.35 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=69.0
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc----
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF---- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~---- 381 (474)
..+++|+.+.+ .....++....+.|. .+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 6 RPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRT 78 (140)
T ss_dssp CSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGG
T ss_pred CCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCccc
Confidence 45677777653 356667777777664 3544444334334332 35787775432 44557777777654
Q ss_pred -CCCEEEcCCCC----cc-eeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 -QLPVLGTAAGG----TM-EIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 -G~PvI~s~~~g----~~-e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|.-.... .. +....|..+++..|-+ .++|..+|..+++
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~ 126 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAID 126 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 67877643222 12 4445577889999988 9999999999875
No 82
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=83.72 E-value=6.6 Score=30.38 Aligned_cols=111 Identities=8% Similarity=0.077 Sum_probs=72.2
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh------------cCCEEEEcCCCCCCCCchHH
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA------------SIDVLVQNSQARGECFGRIT 375 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~------------~adv~v~ps~~~~E~~~~~~ 375 (474)
..+++|+.+.+ .....++...++.+....+......++....+. ..|++++-..- .+.-|..+
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSD----EDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-PGTDGREV 80 (149)
T ss_dssp TSCEEEECCCH----HHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-SSSCHHHH
T ss_pred CccEEEEECCH----HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC-CCCCHHHH
Confidence 45677787754 366777888887775435666665555555554 46888775431 34456777
Q ss_pred HHHHh-----cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 376 IEAMA-----FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 376 ~EAma-----~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
++.+. ..+|+|.. .... ..+....|..+++..|-+ .++|.++|..+++
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 137 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE--IDRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 77765 45777654 3322 123344577899999988 9999999988864
No 83
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=83.38 E-value=8.4 Score=30.03 Aligned_cols=111 Identities=10% Similarity=0.148 Sum_probs=67.9
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh---------cCCEEEEcCCCCCCCCchHHHH
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA---------SIDVLVQNSQARGECFGRITIE 377 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~---------~adv~v~ps~~~~E~~~~~~~E 377 (474)
...+++|+.+.+ .....++...+..+....|.......+...++. ..|++++=-.- .+.-|..+++
T Consensus 7 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~l-p~~~g~~l~~ 81 (149)
T 1i3c_A 7 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PKKDGREVLA 81 (149)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCCeEEEEECCH----HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCC-CCCcHHHHHH
Confidence 356778887754 356667777776654334544444344444444 36888874331 3334666777
Q ss_pred HHh-----cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 378 AMA-----FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 378 Ama-----~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
.+. ..+|+|.- .... ..+.+..|..|++..|-+ .++|.++|..++
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~ 135 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIE 135 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHH
Confidence 664 35677654 3332 233345577899999988 999999988774
No 84
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=83.06 E-value=7.3 Score=29.89 Aligned_cols=110 Identities=11% Similarity=0.061 Sum_probs=68.7
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
...+++|+.+.+ .....+....+..|. .|......++....+.. .|++++-... .+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDA----HVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 456778887754 356677777777764 45555444444444443 5777764331 34456777777653
Q ss_pred --CCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 --QLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 --G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|.- .... ..+.+..|..+++..|-+ .++|.++|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFD--NEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 4677653 3222 233344566789999888 9999999988874
No 85
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=82.99 E-value=8.4 Score=29.05 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=69.5
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH-h--cCCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL-A--SIDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~-~--~adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
..+++|+.+.+ .....+++..++.|.. .+.......+....+ . ..|++++-..- .+.-|..+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 45678887754 4667788888877753 344444333333333 2 36887764331 44457778877653
Q ss_pred --CCCEEEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 --QLPVLGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 --G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|... .... .+.+..|..+++..|-+ .++|.++|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 79 FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLG 126 (129)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhc
Confidence 57876643 3322 23345678899999998 9999999998875
No 86
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=82.48 E-value=1.4 Score=36.99 Aligned_cols=40 Identities=18% Similarity=0.001 Sum_probs=30.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+||||+++... .|.....+..+++.+.+.|++|.++....
T Consensus 3 ~mmkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 3 CKPNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCCEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCcEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 36899999876 34345778888999998999999987543
No 87
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=82.35 E-value=5.3 Score=30.56 Aligned_cols=107 Identities=9% Similarity=0.089 Sum_probs=63.2
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--c-
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--F- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~- 381 (474)
...+++|+.+.+ .....++...+..|. .|......++....+. ..|++++| +.-|+.+++.+. .
T Consensus 17 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~~-----~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVS-----DKNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHSCCSEEEEC-----STTHHHHHHHHHHHST
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHHcCCCCEEEEc-----CccHHHHHHHHHhcCC
Confidence 345667776653 345566666666554 4444443333333333 35777733 334556665554 3
Q ss_pred CCCEEEc-CCCC---cceeeeeCCceeeecCC-CCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGT-AAGG---TMEIVVNGTTGLLHPTG-KEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (474)
.+|+|.- .... ..+.+..|..+++..|- + .++|..+|..++..
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSC--HHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCC--HHHHHHHHHHHHhh
Confidence 6777654 3322 23334557789999988 8 99999999988753
No 88
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=81.31 E-value=4 Score=37.16 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=44.3
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh----hhhhcccchhccceeeeehh-----c
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE----VIYSLEHKMLDRGVQVLSAK-----G 141 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~ 141 (474)
+|++|||+|+.. ..+.....++|.+.||+|..+..+.+..... ....+...-...+++++... .
T Consensus 4 m~~~mrivf~Gt-------~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 76 (318)
T 3q0i_A 4 MSQSLRIVFAGT-------PDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDE 76 (318)
T ss_dssp ---CCEEEEECC-------SHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHH
T ss_pred cccCCEEEEEec-------CHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHH
Confidence 355789999875 2455555677878899987555432221110 01112233345566665332 2
Q ss_pred HHHHhhhcCCCEEEEcc
Q 011954 142 EKAINTALNADLVVLNT 158 (474)
Q Consensus 142 ~~~~~~~~~~DiV~~~~ 158 (474)
....+...++|++++-.
T Consensus 77 ~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 77 SKQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHHTTCCSEEEESS
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 33456678999999864
No 89
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=81.15 E-value=12 Score=27.73 Aligned_cols=74 Identities=16% Similarity=0.330 Sum_probs=49.2
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh--cCCCEEEc
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMA--FQLPVLGT 388 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma--~G~PvI~s 388 (474)
++++|.|..+. -..+.+++.+++.|++-.|.-. ...++...+..+|+++.+.. .. +-..-++..+ .++||+.-
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~-~~~~~~~~~~~~D~Ii~t~~--l~-~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAI-AETRLSEVVDRFDVVLLAPQ--SR-FNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEE-CSTTHHHHTTTCSEEEECSC--CS-SHHHHHHHHHHHHTCCEEEC
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEe-cHHHHHhhcCCCCEEEECCc--cH-HHHHHHHHHhcccCCCEEEE
Confidence 66778887666 5778999999999885444333 34577777889999988765 21 1133334433 58898765
Q ss_pred C
Q 011954 389 A 389 (474)
Q Consensus 389 ~ 389 (474)
+
T Consensus 83 ~ 83 (109)
T 2l2q_A 83 N 83 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=80.96 E-value=33 Score=31.25 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=27.9
Q ss_pred cccCEEEEEecCCCC-CChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.+++|.++.+.... .-.......+.+++.+.|+++.++...
T Consensus 1 ~~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~ 43 (350)
T 3h75_A 1 MSLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAE 43 (350)
T ss_dssp --CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECT
T ss_pred CCCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 346789999987533 112355666667778889999988654
No 91
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=80.92 E-value=41 Score=32.33 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=71.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC---------------chHHHHHHHHHHHcCCCCeEEEecC
Q 011954 282 GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ---------------TKFETELRNFVAEKKIQDHVHFVNK 346 (474)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~---------------~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (474)
.+.+..+.+.+... ..+.-+++|+|+|.-.. ....+.++.+++++. +-+.+.|.
T Consensus 218 ~~~i~~~~~~~g~~---------~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~--~~~Vi~GD 286 (461)
T 4g65_A 218 SNHIRSVMSELQRL---------EKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELE--NTIVFCGD 286 (461)
T ss_dssp TTTHHHHHHHTTGG---------GSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCT--TSEEEESC
T ss_pred cchHHHHHHhhccc---------cccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCC--CceEEecc
Confidence 45666665555322 12344678888773100 002344555555553 45667776
Q ss_pred CCChHHH----HhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCC--CcceeeeeCCceeeecCCCCChHHHHHHH
Q 011954 347 TLTVSPY----LASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAG--GTMEIVVNGTTGLLHPTGKEGVTPLANNI 420 (474)
Q Consensus 347 ~~~~~~~----~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~--g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (474)
-.+..-+ +..+|+++..+.. .|.-=++.+-|-.+|.+=+.+.+. ...++++...-..++.| ....+..|
T Consensus 287 ~td~~~L~ee~i~~~D~~ia~T~~-De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp----~~~~a~~I 361 (461)
T 4g65_A 287 AADQELLTEENIDQVDVFIALTNE-DETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISP----QQATISAL 361 (461)
T ss_dssp TTCHHHHHHTTGGGCSEEEECCSC-HHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECH----HHHHHHHH
T ss_pred ccchhhHhhcCchhhcEEEEcccC-cHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCH----HHHHHHHH
Confidence 5443322 5779999987763 555555677788899887766543 33444533333344443 34566666
Q ss_pred HHHhh
Q 011954 421 VKLAT 425 (474)
Q Consensus 421 ~~ll~ 425 (474)
.+.+.
T Consensus 362 ~~~i~ 366 (461)
T 4g65_A 362 LTHVR 366 (461)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66653
No 92
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=80.85 E-value=12 Score=29.28 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=70.0
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh----
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---- 380 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---- 380 (474)
...+++|+.+.+ .....+++..++.|. .|......++....+. ..|++++-..- .+.-|+.+++.+.
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (154)
T 3gt7_A 6 RAGEILIVEDSP----TQAEHLKHILEETGY--QTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPD 78 (154)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCC
Confidence 356778887754 356677777777664 4544444344444443 35887775431 4455777777664
Q ss_pred -cCCCEEEcC-CCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 -FQLPVLGTA-AGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 -~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..+|+|... ... ..+.+..|..+++..|-+ .++|..+|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 79 LRTIPVILLTILSDPRDVVRSLECGADDFITKPCK--DVVLASHVKRLLS 126 (154)
T ss_dssp TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 467887643 222 123345577899999988 9999999998875
No 93
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=80.54 E-value=10 Score=29.59 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=67.8
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
...+++|+.+.+ .....+++...+.+....+......++....+ ...|++++-... .+.-|..+++.+..
T Consensus 14 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 14 EKVRVVVGDDHP----LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CCEEEEEECSSH----HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcCCH----HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 456777777653 35566677776665322232333333333333 346887764431 44456666666543
Q ss_pred CCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|||.. ..... .+.+..|..+++..|.+ .++|.++|..++..
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDST--RTEIVKAVLDCAKG 135 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHHC
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCC--HHHHHHHHHHHHcC
Confidence 5666653 33221 23445678899999988 99999999999874
No 94
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=80.26 E-value=15 Score=27.56 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=64.5
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh---cCCEEEEcCCCCCC-CCchHHHHHHh---
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA---SIDVLVQNSQARGE-CFGRITIEAMA--- 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~---~adv~v~ps~~~~E-~~~~~~~EAma--- 380 (474)
..+++|+.+.+ .....++......|. .+......++....+. ..|++++-... .+ .-|..+++.+.
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 5 AVTILLADDEA----ILLLDFESTLTDAGF--LVTAVSSGAKAIEMLKSGAAIDGVVTDIRF-CQPPDGWQVARVAREID 77 (132)
T ss_dssp SCEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCCEEEEESCC-SSSSCHHHHHHHHHHHC
T ss_pred CceEEEEcCcH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHcCCCCCEEEEeeeC-CCCCCHHHHHHHHHhcC
Confidence 45777887754 356667777776664 4554444344444443 36887764431 33 45666666554
Q ss_pred cCCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 FQLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 ~G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..+|+|.. ..... .+.+.. .+++..|-+ .++|..+|.+++..
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~--~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 78 PNMPIVYISGHAALEWASNGVPD--SIILEKPFT--SAQLITAVSQLLNA 123 (132)
T ss_dssp TTCCEEEEESSCCTTHHHHSCTT--CEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCccHHHHHhhcCC--cceEeCCCC--HHHHHHHHHHHHhc
Confidence 36787654 32222 122222 368888888 99999999888763
No 95
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=80.14 E-value=6.1 Score=35.11 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=28.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
||||+.+.+... ..-+..|+++|++.| +|.|+.+.....
T Consensus 1 M~ILlTNDDGi~---ApGi~aL~~aL~~~g-~V~VVAP~~~qS 39 (280)
T 1l5x_A 1 MKILVTNDDGVH---SPGLRLLYQFALSLG-DVDVVAPESPKS 39 (280)
T ss_dssp CEEEEECSSCTT---CHHHHHHHHHHGGGS-EEEEEEESSCTT
T ss_pred CeEEEEcCCCCC---cHhHHHHHHHHHhCC-CEEEEecCCCCc
Confidence 689888775322 245889999999988 999999765443
No 96
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=80.12 E-value=9.7 Score=29.66 Aligned_cols=112 Identities=11% Similarity=0.090 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc---C
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF---Q 382 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~---G 382 (474)
..+++|+.+.+ .....+.......+....+......++....+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 20 m~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 20 HMKVLVAEDQS----MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCC
Confidence 35566665542 234445555554432122333333333333332 25777764331 34456666666543 5
Q ss_pred CCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 383 LPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+|+|.- .... ..+.+..|..+++..+-+ .++|.++|..++..
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERS--IADLMQTLHTVLEG 140 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHcC
Confidence 666553 3222 233445677899999988 99999999998863
No 97
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=79.86 E-value=8 Score=30.51 Aligned_cols=67 Identities=10% Similarity=0.148 Sum_probs=42.3
Q ss_pred cCCEEEEcCCCCCCCCchHHHHHHh---cCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 356 SIDVLVQNSQARGECFGRITIEAMA---FQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 356 ~adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..|++++-..- .+.-|+.+++.+. ..+|||...... ..+.+..|..+++..+-+ .++|.++|..++.
T Consensus 83 ~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 83 NIDIVTLXITM-PKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLD--RAKVLQRVMSVFV 156 (157)
T ss_dssp GCCEEEECSSC-SSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTTC
T ss_pred CCCEEEEeccC-CCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 34777764431 3445666665543 467776543222 123345577899999988 9999999988764
No 98
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=79.42 E-value=9.9 Score=29.63 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=65.0
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc---CCEEEEcCCCCCCCCchHHHHHHh---c
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS---IDVLVQNSQARGECFGRITIEAMA---F 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~---adv~v~ps~~~~E~~~~~~~EAma---~ 381 (474)
..+++|+.+.+ .....+....+. + -.|......++....+.. .|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~~ILivdd~~----~~~~~l~~~L~~-~--~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 75 (151)
T 3kcn_A 4 NERILLVDDDY----SLLNTLKRNLSF-D--FEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISP 75 (151)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTT-T--SEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCH----HHHHHHHHHhcc-C--ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCC
Confidence 35677777653 244555555542 3 345544444444444432 3887764331 3445666666543 4
Q ss_pred CCCEEEc-CCCC---cceeeeeC-CceeeecCCCCChHHHHHHHHHHhhCHH
Q 011954 382 QLPVLGT-AAGG---TMEIVVNG-TTGLLHPTGKEGVTPLANNIVKLATHVE 428 (474)
Q Consensus 382 G~PvI~s-~~~g---~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (474)
.+|+|.. .... ..+.+..| ..+++..|-+ .++|.++|..++....
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 76 NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQ--MSDIKAAINAGIKQYD 125 (151)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCC--HHHHHHHHHHHHHHHH
Confidence 6677653 3222 23334456 6789999988 9999999999986443
No 99
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=78.92 E-value=2.9 Score=35.07 Aligned_cols=40 Identities=13% Similarity=-0.076 Sum_probs=30.6
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHH-HHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFL-LRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~-L~~~G~~V~v~~~~ 113 (474)
||||+++......+|. ...+..+++. |.+.|++|.++...
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 5799999876655564 4667777888 88889999988743
No 100
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=78.36 E-value=3.2 Score=35.31 Aligned_cols=41 Identities=15% Similarity=0.002 Sum_probs=30.6
Q ss_pred ccCEEEEEecCCC--CCChh-HHHHHHHHHHHhc--CcEEEEEeCC
Q 011954 73 KSKLVLLVSHELS--LSGGP-LLLMELAFLLRGV--GAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~--~gG~~-~~~~~l~~~L~~~--G~~V~v~~~~ 113 (474)
||||||+|..... .++.. ..+..+++.+.+. |++|.++-..
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~ 48 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 48 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGG
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4689999998766 45543 5667778888877 8999998743
No 101
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=78.06 E-value=6.4 Score=30.24 Aligned_cols=111 Identities=9% Similarity=0.025 Sum_probs=69.8
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHH-cCCCCeEEEecCCCChHHHHh---cCCEEEEcCCCCC-CCCchHHHHHHhc-
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAE-KKIQDHVHFVNKTLTVSPYLA---SIDVLVQNSQARG-ECFGRITIEAMAF- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~---~adv~v~ps~~~~-E~~~~~~~EAma~- 381 (474)
..+++|+.+.+ .....++...++ .+. .|......++....+. ..|++++-..- . +.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFE----YEREKTKIIFDNIGEY--DFIEVENLKKFYSIFKDLDSITLIIMDIAF-PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHHCCC--EEEEECSHHHHHTTTTTCCCCSEEEECSCS-SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhccCc--cEEEECCHHHHHHHHhcCCCCcEEEEeCCC-CCCCcHHHHHHHHHhC
Confidence 45677887754 356677777777 654 4554444334444443 36888875441 2 3345666665543
Q ss_pred ----CCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 382 ----QLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 382 ----G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
.+|+|......- .+.+..|..+++..|-+ .++|.++|..++...
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYP--TKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCC--TTHHHHHHHHHHCC-
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHHhc
Confidence 788876432221 23345577899999988 899999999998744
No 102
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=77.93 E-value=15 Score=28.66 Aligned_cols=111 Identities=12% Similarity=0.142 Sum_probs=67.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---c
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---F 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~ 381 (474)
...+++|+.+.+ .....+....+..|. .|......++....+. ..|++++-... .+.-|..+++.+. .
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 6 KNYTVMLVDDEQ----PILNSLKRLIKRLGC--NIITFTSPLDALEALKGTSVQLVISDMRM-PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp SCCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTSCCSEEEEESSC-SSSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHhCC
Confidence 456778887764 356677777776654 4554444444444443 35887764331 3344566666553 3
Q ss_pred CCCEEEc-CCCCc---ceeeeeC-CceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGT-AAGGT---MEIVVNG-TTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s-~~~g~---~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|+|.- ..... .+.+..| ..+++..|-+ .++|..+|..++..
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~--~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWE--DEDVFKVVEKGLQL 126 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHhccchheeeeCCCC--HHHHHHHHHHHHHH
Confidence 6777654 32221 2233344 6789999988 99999999988753
No 103
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=77.52 E-value=18 Score=27.58 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHh-----c
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMA-----F 381 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma-----~ 381 (474)
.+++|+.+.+ .....+.+..++. ..|......++....+ ...|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~iLivdd~~----~~~~~l~~~l~~~---~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 75 (140)
T 3n53_A 4 KKILIIDQQD----FSRIELKNFLDSE---YLVIESKNEKEALEQIDHHHPDLVILDMDI-IGENSPNLCLKLKRSKGLK 75 (140)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTT---SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHhc---ceEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHcCcccC
Confidence 3566666543 2444555555443 2444444333333333 235777764331 3444566666654 4
Q ss_pred CCCEEEcC-CC---CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGTA-AG---GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s~-~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
++|+|... .. ...+.+..|..+++..|-+ .++|.++|..++..
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIEIHLRT 122 (140)
T ss_dssp TCCEEEEECC----CTTTTTTCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCC--HHHHHHHHHHHHhh
Confidence 67876542 22 2233445577899999988 99999999988753
No 104
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=77.25 E-value=18 Score=26.83 Aligned_cols=109 Identities=12% Similarity=0.189 Sum_probs=65.7
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHh---cC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMA---FQ 382 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma---~G 382 (474)
+.+++|+.+.+ .....++......+. .+......++....+.. .|++++-..- ...-|..+++.+. ..
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEE----PVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMSGVELLRNLGDLKIN 75 (126)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHGGGCCSEEEEEECCS-TTSCHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHhcCCC
Confidence 34677777754 356667777776654 44444433344444433 5777763321 2334566666553 46
Q ss_pred CCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 383 LPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|+|.. .... ..+.+..|..+++..|-+ .+++.++|..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE--DTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHH
Confidence 787654 3332 133345577899999988 9999999988765
No 105
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=77.17 E-value=13 Score=28.47 Aligned_cols=110 Identities=8% Similarity=-0.026 Sum_probs=70.6
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--------cCCEEEEcCCCCCCCCchHHHHHH
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--------SIDVLVQNSQARGECFGRITIEAM 379 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--------~adv~v~ps~~~~E~~~~~~~EAm 379 (474)
..+++|+.+.+ .....++...++.+....|......++....+. ..|++++-..- .+.-|..+++.+
T Consensus 7 ~~~ILivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l-~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDE----VDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCH----HHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TTSCHHHHHHHH
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC-CCCCHHHHHHHH
Confidence 45677887764 356777888887775445666666555555554 36888774431 344566777776
Q ss_pred h-----cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 380 A-----FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 380 a-----~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
. ..+|+|.. .... ..+....|..+++..|-+ .++|.+++....
T Consensus 82 ~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~~~~~~ 133 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLD--YGEAIKLFWILQ 133 (143)
T ss_dssp TTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCC--HHHHHHHHHHHH
T ss_pred HcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCC--HHHHHHHHHHHH
Confidence 5 45777654 3222 133344577899999988 999998866543
No 106
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=76.93 E-value=16 Score=27.77 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=70.0
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHH-cCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAE-KKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF-- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~-- 381 (474)
...+++|+.+.+ .....++...++ .+.. .+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 7 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~ 80 (143)
T 3cnb_A 7 NDFSILIIEDDK----EFADMLTQFLENLFPYA-KIKIAYNPFDAGDLLHTVKPDVVMLDLMM-VGMDGFSICHRIKSTP 80 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHCTTC-EEEEECSHHHHHHHHHHTCCSEEEEETTC-TTSCHHHHHHHHHTST
T ss_pred CCceEEEEECCH----HHHHHHHHHHHhccCcc-EEEEECCHHHHHHHHHhcCCCEEEEeccc-CCCcHHHHHHHHHhCc
Confidence 356788887764 356677777777 6652 2555554444444443 36887775431 34456677777654
Q ss_pred ---CCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 ---QLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 ---G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|+|.. ..... .+.+..|..+++..|-+ .++|.++|..++..
T Consensus 81 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLN--FTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHT
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHh
Confidence 5677653 33322 23344577899999988 99999999988763
No 107
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=76.86 E-value=7.6 Score=29.74 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=65.7
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc--CC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--QL 383 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--G~ 383 (474)
..+++|+.+.+ .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+.. .+
T Consensus 4 ~~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~ 76 (136)
T 2qzj_A 4 QTKILIIDGDK----DNCQKLKGFLEEKGI--SIDLAYNCEEAIGKIFSNKYDLIFLEIIL-SDGDGWTLCKKIRNVTTC 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHCCCSEEEEESEE-TTEEHHHHHHHHHTTCCC
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHccCCCC
Confidence 45777887754 356667777776554 4544443333334333 35887763321 23345666766643 57
Q ss_pred CEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 384 PVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|+|.- .... ..+.+..|..+++..|-+ .++|..++..++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 77 PIVYMTYINEDQSILNALNSGGDDYLIKPLN--LEILYAKVKAILR 120 (136)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHH
Confidence 77654 3222 133345577899999988 9999999988764
No 108
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=76.66 E-value=22 Score=26.93 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=66.0
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh-----c
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA-----F 381 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma-----~ 381 (474)
.+++|+.+.+ .....+....++.|. .|......++..+.+. ..|++++-..- .+.-|..+++.+. .
T Consensus 5 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~lr~~~~~~ 77 (136)
T 3t6k_A 5 HTLLIVDDDD----TVAEMLELVLRGAGY--EVRRAASGEEALQQIYKNLPDALICDVLL-PGIDGYTLCKRVRQHPLTK 77 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSGGGT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHcCCCcC
Confidence 4666776653 355666666666654 3444433333333332 35887764331 3445677776663 3
Q ss_pred CCCEEEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|+|... .+.. .+.+..|..+++..|-+ .++|..+|..++..
T Consensus 78 ~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 78 TLPILMLTAQGDISAKIAGFEAGANDYLAKPFE--PQELVYRVKNILAR 124 (136)
T ss_dssp TCCEEEEECTTCHHHHHHHHHHTCSEEEETTCC--HHHHHHHHHHHHHC
T ss_pred CccEEEEecCCCHHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHhc
Confidence 57887543 3322 23345578899999998 99999999998864
No 109
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=76.60 E-value=21 Score=26.48 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=62.8
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh-----cC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA-----FQ 382 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma-----~G 382 (474)
+++|+.+.+ .....++...++.|. .+......++..+.+. ..|++++-..- .+.-|..+++.+. ..
T Consensus 4 ~ILivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~al~~l~~~~~dlvllD~~~-p~~~g~~~~~~l~~~~~~~~ 76 (122)
T 3gl9_A 4 KVLLVDDSA----VLRKIVSFNLKKEGY--EVIEAENGQIALEKLSEFTPDLIVLXIMM-PVMDGFTVLKKLQEKEEWKR 76 (122)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHTTBCCSEEEECSCC-SSSCHHHHHHHHHTSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEeccC-CCCcHHHHHHHHHhcccccC
Confidence 455665543 345556666666553 3443333333333332 35777764331 3445777777763 35
Q ss_pred CCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 383 LPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 383 ~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|+|.. ..+.. .+....|..+++..|-+ .+++.++|.++++
T Consensus 77 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 77 IPVIVLTAKGGEEDESLALSLGARKVMRKPFS--PSQFIEEVKHLLN 121 (122)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CCEEEEecCCchHHHHHHHhcChhhhccCCCC--HHHHHHHHHHHhc
Confidence 787654 33322 22344577899999998 9999999988764
No 110
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=76.31 E-value=22 Score=26.66 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=68.3
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEE-EecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhc---C
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVH-FVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAF---Q 382 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~---G 382 (474)
++++|+.+.+ .....++....+.|. .+. .....++....+ ...|++++-... .+.-|..+++.+.. .
T Consensus 2 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 74 (134)
T 3f6c_A 2 LNAIIIDDHP----LAIAAIRNLLIKNDI--EILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYS 74 (134)
T ss_dssp EEEEEECCCH----HHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCH----HHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCC
Confidence 4677777654 356777777777762 343 344445555544 346887775432 44556677766543 5
Q ss_pred CCEEEc-CCC---CcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 383 LPVLGT-AAG---GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 383 ~PvI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.|+|.- ... ...+....|..+++..|-+ .+++.++|..++..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCADAGANGFVSKKEG--MNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHHHTTCSEEEEGGGC--THHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHHHhCCCEEEeCCCC--HHHHHHHHHHHHCC
Confidence 666553 322 2233445577899999988 89999999988763
No 111
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=76.12 E-value=6.9 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=28.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
||||+.+.+... ..-+..|+++|++.| +|.|+.+.....
T Consensus 1 M~ILlTNDDGi~---apGi~aL~~~l~~~g-~V~VVAP~~~~S 39 (247)
T 1j9j_A 1 MRILVTNDDGIQ---SKGIIVLAELLSEEH-EVFVVAPDKERS 39 (247)
T ss_dssp CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CeEEEEcCCCCC---cHhHHHHHHHHHhCC-CEEEEecCCCCc
Confidence 689888775322 245889999999988 999999765443
No 112
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=76.05 E-value=23 Score=26.78 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=65.8
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh---cCCEEEEcCCCCCCCCchHHHHHHhc--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA---SIDVLVQNSQARGECFGRITIEAMAF-- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~---~adv~v~ps~~~~E~~~~~~~EAma~-- 381 (474)
+..+++|+.+.+ .....+....+..|. .+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 14 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~dlvilD~~l-~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 14 QPFRVTLVEDEP----SHATLIQYHLNQLGA--EVTVHPSGSAFFQHRSQLSTCDLLIVSDQL-VDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHTGGGGGSCSEEEEETTC-TTSCHHHHHHHHTTSS
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCC--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhhC
Confidence 566777887754 356667777776664 4554444334334333 36887764431 33456777777754
Q ss_pred -CCCEEEc--CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 -QLPVLGT--AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 -G~PvI~s--~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|+|.. ....... ..--..+++..+-+ .++|..+|..++..
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~~~~~l~KP~~--~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEHNLSYLQKPFA--ISELRAAIDYHKPS 131 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSSCEEEEESSCC--HHHHHHHHHHTCCC
T ss_pred CCCCEEEEECCCCCHHH-HHHHHHheeeCCCC--HHHHHHHHHHHHHh
Confidence 5676543 3222211 11005788998888 99999999988764
No 113
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=75.83 E-value=9.1 Score=35.27 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=61.6
Q ss_pred CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC
Q 011954 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL 348 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (474)
.-+.++.+|-=.- |....+.++... ++++++-+.+. ..+..++.+++++++. + ..
T Consensus 22 ~mirigiIG~G~i--g~~~~~~~~~~~-----------~~~~lvav~d~------~~~~a~~~a~~~g~~~-~-----y~ 76 (350)
T 4had_A 22 SMLRFGIISTAKI--GRDNVVPAIQDA-----------ENCVVTAIASR------DLTRAREMADRFSVPH-A-----FG 76 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHHC-----------SSEEEEEEECS------SHHHHHHHHHHHTCSE-E-----ES
T ss_pred CccEEEEEcChHH--HHHHHHHHHHhC-----------CCeEEEEEECC------CHHHHHHHHHHcCCCe-e-----eC
Confidence 4477888874211 222345555432 78998866664 3567788888888642 1 25
Q ss_pred ChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 349 TVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 349 ~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
++.++++. .|+++..+. ...-.-.+.+|+.+|++|++-.
T Consensus 77 d~~ell~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhVl~EK 117 (350)
T 4had_A 77 SYEEMLASDVIDAVYIPLP--TSQHIEWSIKAADAGKHVVCEK 117 (350)
T ss_dssp SHHHHHHCSSCSEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHhcCCEEEEeC
Confidence 77888865 688888775 3333446778999999998764
No 114
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=75.72 E-value=16 Score=27.34 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=65.0
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
...+++|+.+.+ .....+.+..++.|. .+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQ----VFRSLLDSWFSSLGA--TTVLAADGVDALELLGGFTPDLMICDIAM-PRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 456778887754 356677777777764 4544443334444443 35787764431 34456666665543
Q ss_pred CCCEEEcC-CCCc---ceeeeeCCceeeecCC-CCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGTA-AGGT---MEIVVNGTTGLLHPTG-KEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (474)
.+|+|... .... .+.+..|..+++..|- + .+.+.+++..++..
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~--~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 79 QTPVLVISATENMADIAKALRLGVEDVLLKPVKD--LNRLREMVFACLYP 126 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHCCSEEEESCC-----CHHHHHHHHHHC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCc--HHHHHHHHHHHhch
Confidence 57776543 2221 3344567889999987 6 89999999988863
No 115
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=75.47 E-value=16 Score=27.59 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=69.1
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh-c--CCEEEEcCCCCCCCCchHHHHHHhc--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA-S--IDVLVQNSQARGECFGRITIEAMAF-- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~-~--adv~v~ps~~~~E~~~~~~~EAma~-- 381 (474)
...+++|+.+.+ .....++...++.|. .+.......+....+. . .|++++-..- .+.-|+.+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 6 ARPLVLVVDDNA----VNREALILYLKSRGI--DAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASE 78 (136)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHHTTC--CEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTST
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcC
Confidence 346778888764 356777777777765 4544444333333332 2 5777664331 44567777777653
Q ss_pred --CCCEEEcC-CCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 382 --QLPVLGTA-AGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 382 --G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
.+|+|... ... ..+.+..|..+++..|-+ .++|.++|.++....
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVD--LGKLLELVNKELKIG 128 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC--
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHhcCc
Confidence 36776543 222 233445578899999988 999999999988743
No 116
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=75.39 E-value=21 Score=32.48 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.+++++... ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~l~av~d~------~~~~~~~~~~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 93 (330)
T 3e9m_A 28 AQAEVRGIASR------RLENAQKMAKELAIPV------AYGSYEELCKDETIDIIYIPTY--NQGHYSAAKLALSQGKP 93 (330)
T ss_dssp SSEEEEEEBCS------SSHHHHHHHHHTTCCC------CBSSHHHHHHCTTCSEEEECCC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHcCCCc------eeCCHHHHhcCCCCCEEEEcCC--CHHHHHHHHHHHHCCCe
Confidence 67888755543 2355667777776531 2367888887 7899888775 33334456789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 94 vl~EK 98 (330)
T 3e9m_A 94 VLLEK 98 (330)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99865
No 117
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=75.36 E-value=5.4 Score=36.27 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=43.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchh----hhhhcccchhccceeeeehh-----cHH
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDE----VIYSLEHKMLDRGVQVLSAK-----GEK 143 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~ 143 (474)
|+|||+|+... .+.....++|.+.||+|..+..+.+..... ....+...-...+++++... ...
T Consensus 1 ~~mrivf~Gtp-------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFAGTP-------QFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEEECS-------GGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEECCC-------HHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 46899999763 234444567777899987655433221111 01112233345566665432 233
Q ss_pred HHhhhcCCCEEEEcc
Q 011954 144 AINTALNADLVVLNT 158 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (474)
..+...++|++++-.
T Consensus 74 ~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 74 EKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHTTCCSEEEEES
T ss_pred HHHHhcCCCEEEEcC
Confidence 456678999998864
No 118
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=75.30 E-value=23 Score=26.31 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=67.1
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc----
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF---- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~---- 381 (474)
..+++|+.+.+ .....++...+..+.. .+.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~l~~~l~~~~~~ 77 (128)
T 1jbe_A 4 ELKFLVVDDFS----TMRRIVRNLLKELGFN-NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMDGLELLKTIRAXXAM 77 (128)
T ss_dssp TCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSSCHHHHHHHHHC--CC
T ss_pred ccEEEEECCCH----HHHHHHHHHHHHcCCc-EEEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhccc
Confidence 45677887753 3566777777766642 3444443333334433 35887764331 34456777777754
Q ss_pred -CCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 -QLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 -G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|.. .... ..+.+..|..+++..|-+ .+++.++|..++.
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 78 SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT--AATLEEKLNKIFE 124 (128)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCCcEEEEecCccHHHHHHHHHhCcCceeecCCC--HHHHHHHHHHHHH
Confidence 5677654 3322 123344577899999988 9999999988763
No 119
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=75.21 E-value=13 Score=31.83 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCC--CcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEE
Q 011954 285 QDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDM--NAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQ 362 (474)
Q Consensus 285 ~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~--~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ 362 (474)
++.+.+++.++.+ .+.++.++..+. .....+...+++..+++|. .+..+-..++..+.+..||.+++
T Consensus 17 l~~~~~~l~~~~~---------~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~~d~~~~l~~ad~I~l 85 (229)
T 1fy2_A 17 LEHALPLIANQLN---------GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRVADPLAAIEKAEIIIV 85 (229)
T ss_dssp TTTTHHHHHHHHT---------TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSSSCHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhc---------CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEeccccHHHHHhcCCEEEE
Confidence 4445666666543 345677776553 1122355666777777875 44444333566688899999999
Q ss_pred cCCC--------CCCCCchHHHHHHhcCCCEEEcCCC
Q 011954 363 NSQA--------RGECFGRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 363 ps~~--------~~E~~~~~~~EAma~G~PvI~s~~~ 391 (474)
|.=. +.-++--.+-|+...|+|++.+..|
T Consensus 86 pGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 86 GGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp CCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred CCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 9621 0113333566788899999988654
No 120
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=75.20 E-value=8 Score=33.73 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=32.6
Q ss_pred cccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.+|||++|......+|.. ..+..+++.+.+.|++|.++-..
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 4578999999877666654 55667788888889999998754
No 121
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=74.98 E-value=43 Score=29.34 Aligned_cols=217 Identities=10% Similarity=-0.016 Sum_probs=101.6
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
.+..+|.++.+.....-.......+.+++.+.|+++.++....+.... ...+. .....++
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-------------------~~~~~-~l~~~~v 65 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISE-------------------REQIL-EFVHLKV 65 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHH-------------------HHHHH-HHHHTTC
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH-------------------HHHHH-HHHHcCC
Confidence 346789999876432222355666777788899999988754321000 00011 2234689
Q ss_pred CEEEEcccchh---hHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHh-cC
Q 011954 152 DLVVLNTAVAG---KWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERL-GI 227 (474)
Q Consensus 152 DiV~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~ 227 (474)
|.|++...... ..+..+... ..|++..-...... .....+..+.........+.+.+.+ |-
T Consensus 66 dgiI~~~~~~~~~~~~~~~~~~~-----~iPvV~~~~~~~~~----------~~~~~V~~D~~~~g~~~~~~l~~~~~g~ 130 (293)
T 3l6u_A 66 DAIFITTLDDVYIGSAIEEAKKA-----GIPVFAIDRMIRSD----------AVVSSITSNNQMIGEQLASYIKNELIKQ 130 (293)
T ss_dssp SEEEEECSCTTTTHHHHHHHHHT-----TCCEEEESSCCCCT----------TCSEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCChHHHHHHHHHHHHc-----CCCEEEecCCCCCC----------cceeEEecCHHHHHHHHHHHHHHHhccC
Confidence 98877543222 222222222 23555433222110 0112222333333333344444433 32
Q ss_pred C---CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCC-CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhc
Q 011954 228 R---MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVR-DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKK 303 (474)
Q Consensus 228 ~---~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (474)
. ..++-++....+.... . .+ .+-+++.+.-. .-++.....+.. ..+...+++.++.+
T Consensus 131 ~~~~~~~i~~i~g~~~~~~~----~---~R--~~gf~~~l~~~~g~~~~~~~~~~~----~~~~~~~~~~~~l~------ 191 (293)
T 3l6u_A 131 TGRSTGRIVEITGTANVYTT----N---ER--HRGFLKGIENEPTLSIVDSVSGNY----DPVTSERVMRQVID------ 191 (293)
T ss_dssp HSCSCEEEEEEECSTTCHHH----H---HH--HHHHHHHHTTCTTEEEEEEEECTT----CHHHHHHHHHHHHH------
T ss_pred CCCCCceEEEEECCCCCchH----H---HH--HHHHHHHHHhCCCcEEeeeccCCC----CHHHHHHHHHHHHH------
Confidence 1 1256666432221110 0 00 12333333221 111221223333 34445555555544
Q ss_pred cCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC
Q 011954 304 LQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT 349 (474)
Q Consensus 304 ~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (474)
+++++..+++.++. ....+.+.+++.|+. .|.+.|+...
T Consensus 192 -~~~~~~ai~~~~d~-----~a~g~~~al~~~g~~-di~vig~d~~ 230 (293)
T 3l6u_A 192 -SGIPFDAVYCHNDD-----IAMGVLEALKKAKIS-GKIVVGIDGN 230 (293)
T ss_dssp -TTCCCSEEEESSHH-----HHHHHHHHHHHTTCC-CCEEEEEECC
T ss_pred -hCCCCCEEEECCch-----HHHHHHHHHHhCCCC-CeEEEEecCC
Confidence 44677788887752 455677788889987 7888887533
No 122
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=74.95 E-value=5.9 Score=34.59 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=29.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
.||||+.+.+... ..-+..|+++|++.| +|.|+.+.....
T Consensus 1 ~M~ILlTNDDGi~---apGi~aL~~~L~~~g-~V~VVAP~~~~S 40 (254)
T 2v4n_A 1 SMRILLSNDDGVH---APGIQTLAKALREFA-DVQVVAPDRNRS 40 (254)
T ss_dssp CCEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CCeEEEEcCCCCC---CHHHHHHHHHHHhCC-cEEEEeeCCCCc
Confidence 3789988875322 245889999998876 999999765443
No 123
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=74.93 E-value=15 Score=28.66 Aligned_cols=111 Identities=8% Similarity=0.073 Sum_probs=66.3
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHc-CCCCeEEEecCCCChHHHHhc---CCEEEEcCCCCCCCCchHHHHHHh---
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLAS---IDVLVQNSQARGECFGRITIEAMA--- 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~~---adv~v~ps~~~~E~~~~~~~EAma--- 380 (474)
..+++|+.+.+ .....++....+. +. ..+......++....+.. .|++++-... .+.-|..+++.+.
T Consensus 3 ~~~iLivdd~~----~~~~~l~~~L~~~~g~-~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 3 LTVVLIVDDHH----LIRAGAKNLLEGAFSG-MRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFD 76 (154)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHHCTT-EEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHC
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCc-eEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhC
Confidence 46777887754 3566777777766 43 245555554555555544 6887764331 2334566666554
Q ss_pred cCCCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 FQLPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 ~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.++|+|...... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAALEAGADGFIPKSAD--PQVLIHAVSLILEG 124 (154)
T ss_dssp TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSC--HHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCC--HHHHHHHHHHHHcC
Confidence 367877643222 133344577899999988 99999999998863
No 124
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=74.93 E-value=4.9 Score=35.72 Aligned_cols=41 Identities=20% Similarity=0.016 Sum_probs=30.9
Q ss_pred cCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|||||+|......+|.. ..+..+++.|.+.|++|.++....
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~ 43 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYA 43 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccc
Confidence 57999999766555543 556667788888999999988543
No 125
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=74.72 E-value=17 Score=28.23 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~ 383 (474)
.+++|+.+.+ .....+.....+.|. .|......++....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 15 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 87 (153)
T 3hv2_A 15 PEILLVDSQE----VILQRLQQLLSPLPY--TLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPST 87 (153)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTSSC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTTS
T ss_pred ceEEEECCCH----HHHHHHHHHhcccCc--EEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCCC
Confidence 4555555542 234445555544442 3333333333333332 24777764331 3445666665553 467
Q ss_pred CEEEcCCCCc----ceeeeeC-CceeeecCCCCChHHHHHHHHHHhhC
Q 011954 384 PVLGTAAGGT----MEIVVNG-TTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 384 PvI~s~~~g~----~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
|+|.-....- .+.+..| ..+++..|-+ .++|..+|..++..
T Consensus 88 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 88 TRILLTGDPDLKLIAKAINEGEIYRYLSKPWD--DQELLLALRQALEH 133 (153)
T ss_dssp EEEEECCCCCHHHHHHHHHTTCCSEEECSSCC--HHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHhCCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 7765432222 2334445 6789999988 99999999998863
No 126
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=74.64 E-value=5.4 Score=31.30 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=32.4
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEE-EEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEV-VWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V-~v~~~~~ 114 (474)
.||++|+....+.|.- .+...+++.++.+.||+| .|+....
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~D 54 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYRE 54 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEech
Confidence 6889999986666543 367899999999999999 8887543
No 127
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=74.63 E-value=19 Score=26.58 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=61.6
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHh-----cC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMA-----FQ 382 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma-----~G 382 (474)
+++|+.+.+ .....++...+..|. .+.......+....+ ...|++++-..- .+.-|..+++.+. ..
T Consensus 3 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (124)
T 1mb3_A 3 KVLIVEDNE----LNMKLFHDLLEAQGY--ETLQTREGLSALSIARENKPDLILMDIQL-PEISGLEVTKWLKEDDDLAH 75 (124)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEESBC-SSSBHHHHHHHHHHSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHcCccccC
Confidence 456666643 355666666666554 343333322333333 236887764331 3344666777664 25
Q ss_pred CCEEEcCCCC----cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 383 LPVLGTAAGG----TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 383 ~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|+|...... ..+....|..+++..|-+ .+++.+++..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 76 IPVVAVTAFAMKGDEERIREGGCEAYISKPIS--VVHFLETIKRLLE 120 (124)
T ss_dssp SCEEEEC------CHHHHHHHTCSEEECSSCC--HHHHHHHHHHHHS
T ss_pred CcEEEEECCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 7887643221 123344577899999988 9999999988765
No 128
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=74.63 E-value=13 Score=28.92 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=32.3
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|+|++|+....+.|.. .+...+++.++...|++|.|+....+
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DG 47 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDG 47 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHH
Confidence 4479999976666553 46688899999999999999885543
No 129
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=74.21 E-value=5.8 Score=30.58 Aligned_cols=40 Identities=13% Similarity=-0.078 Sum_probs=30.6
Q ss_pred CEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEE-EEEeCCC
Q 011954 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEV-VWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V-~v~~~~~ 114 (474)
||++++....+.|.. ......++.++.+.||+| .|+....
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~d 42 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHD 42 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEech
Confidence 578888876555433 367889999999999999 8887543
No 130
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=74.20 E-value=10 Score=27.53 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=63.7
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh-----cC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA-----FQ 382 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma-----~G 382 (474)
+++|+.+.+ .....+....+..|. .+......++....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 3 ~iliv~~~~----~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 3 HILLLEEED----EAATVVCEMLTAAGF--KVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPH 75 (119)
T ss_dssp EEEEECCCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSS
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCC
Confidence 466676653 356667777776664 4554444333333332 36877764431 3345666777664 46
Q ss_pred CCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 383 LPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 383 ~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|+|.. +.....+....|..+++..|-+ .+++.+++..++.
T Consensus 76 ~~ii~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~ 117 (119)
T 2j48_A 76 PPLVLFLGEPPVDPLLTAQASAILSKPLD--PQLLLTTLQGLCP 117 (119)
T ss_dssp CCCEEEESSCCSSHHHHHHCSEECSSCST--THHHHHHHHTTCC
T ss_pred CCEEEEeCCCCchhhhhcCHHHhccCCCC--HHHHHHHHHHHhc
Confidence 777653 3222224444567788888887 8999998877653
No 131
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=73.95 E-value=22 Score=32.85 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.+++++++..+.. ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 29 ~~~~lv~v~d~------~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 97 (362)
T 1ydw_A 29 PNATISGVASR------SLEKAKAFATANNYPESTKI---HGSYESLLEDPEIDALYVPLP--TSLHVEWAIKAAEKGKH 97 (362)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCCTTCEE---ESSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHTTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCCCCCee---eCCHHHHhcCCCCCEEEEcCC--hHHHHHHHHHHHHCCCe
Confidence 67888765554 34566777888875322222 246777886 4899998875 34344466789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 98 V~~EK 102 (362)
T 1ydw_A 98 ILLEK 102 (362)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99854
No 132
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=73.83 E-value=3.8 Score=30.86 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=24.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|.+++||++.... .....+...|.+.|++|..+.
T Consensus 1 M~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 34 (127)
T 3i42_A 1 MSLQQALIVEDYQ------AAAETFKELLEMLGFQADYVM 34 (127)
T ss_dssp -CCEEEEEECSCH------HHHHHHHHHHHHTTEEEEEES
T ss_pred CCcceEEEEcCCH------HHHHHHHHHHHHcCCCEEEEC
Confidence 5577899998643 456677788888999877654
No 133
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=73.49 E-value=17 Score=27.55 Aligned_cols=111 Identities=11% Similarity=0.073 Sum_probs=69.3
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
...+++|+.+.+ .....++....+.+. .+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (137)
T 3hdg_A 6 VALKILIVEDDT----DAREWLSTIISNHFP--EVWSAGDGEEGERLFGLHAPDVIITDIRM-PKLGGLEMLDRIKAGGA 78 (137)
T ss_dssp -CCCEEEECSCH----HHHHHHHHHHHTTCS--CEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTC
T ss_pred cccEEEEEeCCH----HHHHHHHHHHHhcCc--EEEEECCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 346788888764 356667777776442 4555554444444432 46888775432 44556666665543
Q ss_pred CCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|+|......- .+.+..|..+++..|-+ .++|.++|.++++.
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 79 KPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE--PGRLMETLEDFRHI 125 (137)
T ss_dssp CCEEEECCCCCCHHHHHHHHHHCCSEECCSSCC--HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCcChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHHH
Confidence 567766432222 23445678899999988 99999999998753
No 134
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=73.27 E-value=21 Score=27.42 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=64.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh----
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---- 380 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---- 380 (474)
...+++|+.+.+ .....++.+.++.|. .+......++..+.+. ..|++++=..- .+.-|..+++.+.
T Consensus 13 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~m-p~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 13 RSMRMLVADDHE----ANRMVLQRLLEKAGH--KVLCVNGAEQVLDAMAEEDYDAVIVDLHM-PGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp --CEEEEECSSH----HHHHHHHHHHHC--C--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhchh
Confidence 346777777653 355666666666553 3444443334334433 36887764331 3445677777664
Q ss_pred ---cCCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 ---FQLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 ---~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..+|+|....... .+....|..+++..|-+ .++|.++|..+..
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVV--AAKLLDTLADLAV 135 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHC-
T ss_pred ccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCC--HHHHHHHHHHHHH
Confidence 2367776533322 22344577899999998 9999999998864
No 135
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.11 E-value=45 Score=28.75 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=28.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
..+|.++.+.....-.......+.+++.+.|+++.++....
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 42 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD 42 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46788888765332223566677778888999999887543
No 136
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=73.10 E-value=4.6 Score=31.81 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=29.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||||+++... ..|..+..+..+++.|.+.|++|.++...
T Consensus 1 M~ki~I~y~S-~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 1 MSKVLIVFGS-STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp -CEEEEEEEC-SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCeEEEEEEC-CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 4678777643 23445788999999999999999998754
No 137
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=73.01 E-value=6.7 Score=34.17 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=31.2
Q ss_pred cccCEEEEEecCC-C-------CCChh-HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 72 MKSKLVLLVSHEL-S-------LSGGP-LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 72 ~~~~kIl~v~~~~-~-------~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|.|+|||++.... . +.|.+ .-+..-...|++.|++|+++++.+.
T Consensus 1 m~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~ 53 (244)
T 3kkl_A 1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGG 53 (244)
T ss_dssp --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4578999998753 1 24554 4466667889999999999997654
No 138
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=72.68 E-value=18 Score=26.62 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=46.5
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
-++++|.|..++ -..+.+++.+++.|++-.|.-. ...++......+|+++.... -.+...-++..+-.+|
T Consensus 6 Ill~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~-~~~~~~~~~~~~Dvil~~pq---v~~~~~~~~~~~~~~~ 75 (106)
T 1e2b_A 6 IYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAF-PETLAGEKGQNADVVLLGPQ---IAYMLPEIQRLLPNKP 75 (106)
T ss_dssp EEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEE-CSSSTTHHHHHCSEEEECTT---SGGGHHHHHHHSSSSC
T ss_pred EEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEe-cHHHHHhhccCCCEEEEccc---hhhhHHHHHHHhcCCC
Confidence 467888887555 4667999999999986443333 44567778899999998765 2344445555543333
No 139
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=72.68 E-value=8.1 Score=35.10 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=44.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh----hhhcccchhccceeeeehhc-----HH
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV----IYSLEHKMLDRGVQVLSAKG-----EK 143 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~ 143 (474)
+||||+|+... .+.....++|.+.||+|..+..+.+...... ...+...-...+++++.... ..
T Consensus 3 ~mmrIvf~Gtp-------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~ 75 (317)
T 3rfo_A 3 AMIKVVFMGTP-------DFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEY 75 (317)
T ss_dssp TTSEEEEECCS-------TTHHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHH
T ss_pred CceEEEEEeCC-------HHHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHH
Confidence 57899999763 2344445667777999886654433221110 01122333455666654322 23
Q ss_pred HHhhhcCCCEEEEcc
Q 011954 144 AINTALNADLVVLNT 158 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (474)
..+...++|++++-.
T Consensus 76 ~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 76 EKVLALEPDLIVTAA 90 (317)
T ss_dssp HHHHHHCCSEEEESS
T ss_pred HHHHhcCCCEEEEcC
Confidence 345568999999864
No 140
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=72.45 E-value=16 Score=27.00 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=66.2
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCC-CCCchHHHHHHh-----
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARG-ECFGRITIEAMA----- 380 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~-E~~~~~~~EAma----- 380 (474)
.+++|+.+.+ .....+....++.|. .+......++....+. ..|++++-... . +.-|..+++.+.
T Consensus 6 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~d~~~-~~~~~g~~~~~~l~~~~~~ 78 (127)
T 2gkg_A 6 KKILIVESDT----ALSATLRSALEGRGF--TVDETTDGKGSVEQIRRDRPDLVVLAVDL-SAGQNGYLICGKLKKDDDL 78 (127)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHHTC--EEEEECCHHHHHHHHHHHCCSEEEEESBC-GGGCBHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCc--eEEEecCHHHHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCccc
Confidence 4667777653 355667777776664 4544443333333332 36887764331 2 335666776664
Q ss_pred cCCCEEEcCCCCc----ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 FQLPVLGTAAGGT----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 ~G~PvI~s~~~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..+|+|.. .... .+....|..+++..|-+ .+++.+.+..++..
T Consensus 79 ~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVD--ADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCC--HHHHHHHHHHHHCC
T ss_pred cCCCEEEE-ecCCchhHHHHHHhCcchheeCCCC--HHHHHHHHHHHHcC
Confidence 46888876 3322 23344567899999988 99999999888753
No 141
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=72.26 E-value=28 Score=25.99 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=62.6
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc-----
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF----- 381 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~----- 381 (474)
.+++|+.+.+ .....++...+ .+ -.+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 5 ~~ilivdd~~----~~~~~l~~~l~-~~--~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 5 PKVLIVENSW----TMRETLRLLLS-GE--FDCTTAADGASGLQQALAHPPDVLISDVNM-DGMDGYALCGHFRSEPTLK 76 (133)
T ss_dssp CEEEEECSCH----HHHHHHHHHHT-TT--SEEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEcCCH----HHHHHHHHHHh-CC--cEEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhCCccC
Confidence 4667777653 24444554444 22 24544444334333332 35777764431 44556777766554
Q ss_pred CCCEEEcCC-CC--cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGTAA-GG--TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s~~-~g--~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
++|+|.... .. ..+....|..+++..|-+ .++|.++|..++..
T Consensus 77 ~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 77 HIPVIFVSGYAPRTEGPADQPVPDAYLVKPVK--PPVLIAQLHALLAR 122 (133)
T ss_dssp TCCEEEEESCCC-----TTSCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHhHHHHhhcCCceEEeccCC--HHHHHHHHHHHHhh
Confidence 678865432 21 123344567789999988 99999999999863
No 142
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=71.85 E-value=26 Score=26.10 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhc----
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAF---- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~---- 381 (474)
..+++|+.+.+ .....+++..++.+. .|......++....+ ...|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 6 SKRILVVDDDQ----AMAAAIERVLKRDHW--QVEIAHNGFDAGIKLSTFEPAIMTLDLSM-PKLDGLDVIRSLRQNKVA 78 (132)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTCCSEEEEESCB-TTBCHHHHHHHHHTTTCS
T ss_pred CccEEEEECCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCcc
Confidence 45677777653 356667777776654 455444433443333 245777764431 44556777777653
Q ss_pred -CCCEEEcCCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 -QLPVLGTAAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 -G~PvI~s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..|+|.+..... .+.+..|..+++..|-+ .++|.++|.+....
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFD--NDALLDRIHDLVNE 125 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCC--HHHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCC--HHHHHHHHHHHcCC
Confidence 244444432221 23445678899999998 99999999988763
No 143
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=71.08 E-value=31 Score=26.09 Aligned_cols=109 Identities=6% Similarity=0.025 Sum_probs=62.8
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh------
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA------ 380 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma------ 380 (474)
.+++|+.+.+ .....+....+..+. .+......++....+. ..|++++-..- .+.-|..+++.+.
T Consensus 11 ~~iLivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~al~~l~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~~ 83 (140)
T 3c97_A 11 LSVLIAEDND----ICRLVAAKALEKCTN--DITVVTNGLQALQAYQNRQFDVIIMDIQM-PVMDGLEAVSEIRNYERTH 83 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHTTTCS--EEEEESSHHHHHHHHHHSCCSEEEECTTC-CSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCC--ceEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhhhhhc
Confidence 4677777653 245555666555442 4554444334333333 36888774331 2334666666654
Q ss_pred --cCCCEEEcC-CCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 --FQLPVLGTA-AGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 --~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
...|+|... .....+....|..+++..|-+ .++|.++|..++..
T Consensus 84 ~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 84 NTKRASIIAITADTIDDDRPGAELDEYVSKPLN--PNQLRDVVLTCHSE 130 (140)
T ss_dssp TCCCCCCEEEESSCCSCCCCCSSCSEEEESSCC--HHHHHHHHHHHHC-
T ss_pred CCCceEEEEEeCccchhHHHhCChhheEeCCCC--HHHHHHHHHHHhCC
Confidence 356776543 222222234455789999988 99999999988753
No 144
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.91 E-value=22 Score=27.03 Aligned_cols=107 Identities=9% Similarity=0.221 Sum_probs=62.4
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~P 384 (474)
+++|+.+.+ .....++......|. .|......++....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 6 ~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDST----SLAILYKQYVKDEPY--DIFHVETGRDAIQFIERSKPQLIILDLKL-PDMSGEDVLDWINQNDIPTS 78 (137)
T ss_dssp EEEEECSCT----THHHHHHHHTTTSSS--EEEEESSHHHHHHHHHHHCCSEEEECSBC-SSSBHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhcCc--eEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 567777654 355666666655443 3444333333333332 46887764331 3334666666654 3566
Q ss_pred EEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|.. ..... .+.+..|..+++..|-+ .++|..+|..++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPIN--ADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 6653 33221 23344577899999988 9999999988764
No 145
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=70.48 E-value=29 Score=25.47 Aligned_cols=107 Identities=9% Similarity=0.083 Sum_probs=62.0
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--cCCCE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--FQLPV 385 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~G~Pv 385 (474)
+++|+.+.+ .....++...++.|. .+......++..+.+. ..|++++-..- .+.-|..+++.+. .+.|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~~~g~~~~~~lr~~~~~~i 76 (120)
T 3f6p_A 4 KILVVDDEK----PIADILEFNLRKEGY--EVHCAHDGNEAVEMVEELQPDLILLDIML-PNKDGVEVCREVRKKYDMPI 76 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCSEEEEETTS-TTTHHHHHHHHHHTTCCSCE
T ss_pred eEEEEECCH----HHHHHHHHHHHhCCE--EEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCE
Confidence 456666543 345566666666654 3444333333333332 35777764331 3344666666553 36787
Q ss_pred EEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 386 LGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 386 I~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|... .... .+.+..|..+++..|-+ .+++..++..++.
T Consensus 77 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFS--TRELLARVKANLR 118 (120)
T ss_dssp EEEEESSCHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHh
Confidence 6543 2221 22345577899999998 9999999988764
No 146
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=70.48 E-value=4.8 Score=30.09 Aligned_cols=34 Identities=32% Similarity=0.256 Sum_probs=23.3
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
||+++|+++.... .....+...|.+.|++|....
T Consensus 3 mm~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 36 (127)
T 2gkg_A 3 HMSKKILIVESDT------ALSATLRSALEGRGFTVDETT 36 (127)
T ss_dssp ---CEEEEECSCH------HHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEEeCCH------HHHHHHHHHHHhcCceEEEec
Confidence 5567999998642 456677788888899987543
No 147
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=70.46 E-value=20 Score=29.73 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=43.8
Q ss_pred cccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcC
Q 011954 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALN 150 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (474)
||++||+++... |. ..-+......|++.|++|.+++...+... ....|+.+.....+........
T Consensus 1 mm~~~v~ill~~----g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v----------~~~~g~~v~~d~~l~~~~~~~~ 66 (197)
T 2rk3_A 1 MASKRALVILAK----GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPV----------QCSRDVVICPDASLEDAKKEGP 66 (197)
T ss_dssp -CCCEEEEEECT----TCCHHHHHHHHHHHHHTTCEEEEEETTCSSCE----------ECTTSCEECCSEEHHHHHTTCC
T ss_pred CCCCEEEEEECC----CCcHHHHHHHHHHHHHCCCEEEEEEcCCCCcc----------ccCCCCEEeCCcCHHHcCCccC
Confidence 467889888752 22 24456667788899999999997643210 0123444433323333213367
Q ss_pred CCEEEEccc
Q 011954 151 ADLVVLNTA 159 (474)
Q Consensus 151 ~DiV~~~~~ 159 (474)
+|+|++...
T Consensus 67 ~D~livpGG 75 (197)
T 2rk3_A 67 YDVVVLPGG 75 (197)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999998764
No 148
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=70.39 E-value=6.9 Score=29.27 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=30.0
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhc-Cc-EEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGV-GA-EVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~-G~-~V~v~~~~~ 114 (474)
|||++++....+.+.. ......++.++.+. |+ +|.++....
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 3578888876555322 35578889999888 99 999988553
No 149
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=70.29 E-value=17 Score=27.79 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=66.8
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQ 382 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G 382 (474)
..+++|+.+.+ .....++...++.|. .|......++....+. ..|++++-.. .+.-|..+++.+. ..
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~--~~~~g~~~~~~l~~~~~~ 75 (142)
T 2qxy_A 4 TPTVMVVDESR----ITFLAVKNALEKDGF--NVIWAKNEQEAFTFLRREKIDLVFVDVF--EGEESLNLIRRIREEFPD 75 (142)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHGGGTC--EEEEESSHHHHHHHHTTSCCSEEEEECT--TTHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhccCCCEEEEeCC--CCCcHHHHHHHHHHHCCC
Confidence 45677777653 356667777776664 4554444344444443 3577776433 3444555565543 35
Q ss_pred CCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 383 LPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 383 ~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
+|+|.. ..... .+....|..+++..|-+ .++|.++|..++...
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINSVKAGAVDYILKPFR--LDYLLERVKKIISST 122 (142)
T ss_dssp CEEEEEESCCCHHHHHHHHHHTCSCEEESSCC--HHHHHHHHHHHHHC-
T ss_pred CCEEEEECCCCHHHHHHHHHCCcceeEeCCCC--HHHHHHHHHHHHhhc
Confidence 777654 33222 23344577899999988 999999999988743
No 150
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=70.02 E-value=5.9 Score=33.42 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=31.0
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
.+|||+++.... +|. ...+..+++.+.+.|++|.++....
T Consensus 5 ~mmkilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 5 APVKLAIVFYSS--TGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCCEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCCeEEEEEECC--CChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 367999998543 454 5778888999999999999987543
No 151
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=69.87 E-value=8.5 Score=29.75 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcC-CCCeEEEecCC-CChHHHH---hcCCEEEEcCCCCCCCCchHHHHHHh--
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKK-IQDHVHFVNKT-LTVSPYL---ASIDVLVQNSQARGECFGRITIEAMA-- 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~-~~~~~~~---~~adv~v~ps~~~~E~~~~~~~EAma-- 380 (474)
..+++|+.+.+ .....++....+.| . .+...... +.+..+. ...|++++-..- .+.-|+.+++.+.
T Consensus 20 ~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~ 92 (146)
T 4dad_A 20 MINILVASEDA----SRLAHLARLVGDAGRY--RVTRTVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAELAAIEKLSRL 92 (146)
T ss_dssp GCEEEEECSCH----HHHHHHHHHHHHHCSC--EEEEECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCH----HHHHHHHHHHhhCCCe--EEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHHHHHHHHHHh
Confidence 45666666653 34556666666655 2 23333222 2222222 346887764331 3334555665543
Q ss_pred -cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 -FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 -~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..+|+|.- .... ..+.+..|..+++..|-+ .++|..+|..++.
T Consensus 93 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 140 (146)
T 4dad_A 93 HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLE--PRALDDALKRAAA 140 (146)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCC--HHHHHHHHHHHHh
Confidence 35677654 3222 123345567889999988 9999999998875
No 152
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=69.85 E-value=10 Score=34.52 Aligned_cols=41 Identities=24% Similarity=0.027 Sum_probs=24.8
Q ss_pred CcccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 67 NPLNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 67 ~~~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++...+++|+|++.. |....=..+++.|.+.|++|.++...
T Consensus 14 ~~~~~~~~~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 14 LVPRGSHMKKVFITG------ICGQIGSHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp -------CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred eeeecCCCCEEEEeC------CccHHHHHHHHHHHHCCCEEEEEECC
Confidence 444445577887764 22345567788888899999999854
No 153
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=69.49 E-value=12 Score=28.50 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=64.9
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh-cCCEEEEcCCCCCCCCchHHHHHHh----c
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA-SIDVLVQNSQARGECFGRITIEAMA----F 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~-~adv~v~ps~~~~E~~~~~~~EAma----~ 381 (474)
...+++|+.+.+ .....+....+..|. .|......++....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 6 TGLKVLVMDENG----VSRMVTKGLLVHLGC--EVTTVSSNEECLRVVSHEHKVVFMDVCM-PGVENYQIALRIHEKFTK 78 (136)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHCCTTCSEEEEECCS-STTTTTHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhccCCEEEEeCCC-CCCcHHHHHHHHHHhhhh
Confidence 346778887764 356667777776664 4544433333333332 23887764321 2334556666553 1
Q ss_pred ---CCC-EE-EcCCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 ---QLP-VL-GTAAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 ---G~P-vI-~s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..| +| .|..... .+....|..+++..|-+ .+++.+++..++..
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVS--LDNIRDVLSDLLEP 129 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHSC
T ss_pred ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCC--HHHHHHHHHHHhch
Confidence 344 44 4544432 22344577899999988 99999999888753
No 154
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=69.46 E-value=5.9 Score=32.96 Aligned_cols=39 Identities=23% Similarity=0.098 Sum_probs=29.9
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHh-cCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRG-VGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (474)
||||+++... ++|. ...+..+++.+.+ .|++|.++....
T Consensus 1 Mmkilii~~S--~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 1 MAKVLVLYYS--MYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp -CEEEEEECC--SSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CCeEEEEEeC--CCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 4689998865 4444 5778888999998 899999987543
No 155
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=69.43 E-value=7 Score=31.97 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=28.3
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|+|||++... |+. .....++.+.|.+.|++|+++.....
T Consensus 4 m~k~IllgvT----Gs~aa~k~~~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 4 MGENVLICLC----GSVNSINISHYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp -CCEEEEEEC----SSGGGGGHHHHHHHHTTTCSEEEEEECTGG
T ss_pred CCCEEEEEEe----CHHHHHHHHHHHHHHHHCCCEEEEEECcCH
Confidence 4578877765 222 24588999999999999999986543
No 156
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=69.41 E-value=6.6 Score=37.73 Aligned_cols=36 Identities=14% Similarity=0.336 Sum_probs=28.0
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.||++|||++. +++ ....+++++++.|++|.++...
T Consensus 3 ~m~~~kiLI~g------~g~-~a~~i~~aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 3 AMEIKSILIAN------RGE-IALRALRTIKEMGKKAICVYSE 38 (446)
T ss_dssp TTCCCEEEECC------CHH-HHHHHHHHHHHTTCEEEEEEEG
T ss_pred ccccceEEEEC------CCH-HHHHHHHHHHHcCCEEEEEEcC
Confidence 46788999864 333 6779999999999999988643
No 157
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=69.22 E-value=24 Score=26.15 Aligned_cols=110 Identities=7% Similarity=0.046 Sum_probs=66.7
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh-----
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA----- 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma----- 380 (474)
..+++|+.+.+ .....+++..++.|. .|......++....+. ..|++++-..- .+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~ 75 (127)
T 3i42_A 3 LQQALIVEDYQ----AAAETFKELLEMLGF--QADYVMSGTDALHAMSTRGYDAVFIDLNL-PDTSGLALVKQLRALPME 75 (127)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHTTE--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHSCCS
T ss_pred cceEEEEcCCH----HHHHHHHHHHHHcCC--CEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhhcc
Confidence 35677777653 356677777777764 4554444444444443 35777764331 4455677776654
Q ss_pred cCCCEEEcC-CCCc--ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 FQLPVLGTA-AGGT--MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 ~G~PvI~s~-~~g~--~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..+|+|... .... .+.+..|..+++..|-+ .++|.+++......
T Consensus 76 ~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 76 KTSKFVAVSGFAKNDLGKEACELFDFYLEKPID--IASLEPILQSIEGH 122 (127)
T ss_dssp SCCEEEEEECC-CTTCCHHHHHHCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred CCCCEEEEECCcchhHHHHHHHhhHHheeCCCC--HHHHHHHHHHhhcc
Confidence 346776542 2221 33344567889999998 99999999887653
No 158
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=69.14 E-value=9.3 Score=33.29 Aligned_cols=42 Identities=17% Similarity=0.010 Sum_probs=30.7
Q ss_pred cCEEEEEecCCC--------CCChh-HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELS--------LSGGP-LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~--------~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|+|||++..... +.|.+ .-+..-...|++.|++|+++++.+.
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT 59 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 579999987631 13554 4466667889999999999997654
No 159
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=69.00 E-value=34 Score=25.71 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=66.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEE-ecCCCChHHHHh--cCCEEEEcCCCCC-CCCchHHHHHHh--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHF-VNKTLTVSPYLA--SIDVLVQNSQARG-ECFGRITIEAMA-- 380 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~~~~~~~~--~adv~v~ps~~~~-E~~~~~~~EAma-- 380 (474)
...+++|+.+.+ .....++...++.|. .+.. ....++....+. ..|++++-... . +.-|..+++.+.
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~~-~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGR----LAAATLRIQLESLGY--DVLGVFDNGEEAVRCAPDLRPDIALVDIML-CGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBH----HHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-CSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCH----HHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCCHHHHHHHHHhC
Confidence 456777777653 356667777776654 3442 333334333332 36887775431 2 234555665544
Q ss_pred cCCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 FQLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 ~G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..+|+|.- ..... .+.+..|..+++..|-+ .++|..+|..++.
T Consensus 81 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVA--ADTLHRSIEMAIH 127 (140)
T ss_dssp SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 57888754 33322 23344577899999988 9999999988875
No 160
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=68.94 E-value=10 Score=34.14 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=48.8
Q ss_pred CCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCE
Q 011954 306 VPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPV 385 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~Pv 385 (474)
.++++++-+-+. ..+..++.+++++... ..++.+++..+|+++..+. ...-.-.+.+|+..|++|
T Consensus 29 ~~~~~l~av~d~------~~~~~~~~a~~~~~~~-------~~~~~~ll~~~D~V~i~tp--~~~h~~~~~~al~~gk~v 93 (308)
T 3uuw_A 29 SERFEFVGAFTP------NKVKREKICSDYRIMP-------FDSIESLAKKCDCIFLHSS--TETHYEIIKILLNLGVHV 93 (308)
T ss_dssp CSSSEEEEEECS------CHHHHHHHHHHHTCCB-------CSCHHHHHTTCSEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEECC------CHHHHHHHHHHcCCCC-------cCCHHHHHhcCCEEEEeCC--cHhHHHHHHHHHHCCCcE
Confidence 377888755543 3566777778777531 3577788889999998776 343444567899999999
Q ss_pred EEcC
Q 011954 386 LGTA 389 (474)
Q Consensus 386 I~s~ 389 (474)
++-.
T Consensus 94 l~EK 97 (308)
T 3uuw_A 94 YVDK 97 (308)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8764
No 161
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=68.84 E-value=37 Score=26.14 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh----
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---- 380 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---- 380 (474)
.+.+++|+=+.+ ..+..++...++.|.. .|.....-.+..+.+. ..|++++=-.- .+.-|+.+++.+-
T Consensus 11 k~~rILiVDD~~----~~r~~l~~~L~~~G~~-~v~~a~~g~~al~~~~~~~~DlillD~~M-P~mdG~el~~~ir~~~~ 84 (134)
T 3to5_A 11 KNMKILIVDDFS----TMRRIVKNLLRDLGFN-NTQEADDGLTALPMLKKGDFDFVVTDWNM-PGMQGIDLLKNIRADEE 84 (134)
T ss_dssp TTCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHhCCC
Confidence 456777776653 3566777777777753 2433333222223332 35777763221 3445777887764
Q ss_pred -cCCCEEEc-CCCCcc---eeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 -FQLPVLGT-AAGGTM---EIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 -~G~PvI~s-~~~g~~---e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..+|||.- ..+... +...-|-++++..|-+ +++|.++|.++++
T Consensus 85 ~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 132 (134)
T 3to5_A 85 LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFT--AATLKEKLDKIFE 132 (134)
T ss_dssp TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHCC
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHh
Confidence 46888754 333322 2344578899999998 9999999988864
No 162
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=68.62 E-value=7.6 Score=33.39 Aligned_cols=41 Identities=20% Similarity=-0.054 Sum_probs=32.2
Q ss_pred cCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
.||||+|......++.. ..+...++.|.+.|++|.++-...
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 37899999877666653 667778888888999999998543
No 163
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=68.47 E-value=32 Score=25.14 Aligned_cols=107 Identities=11% Similarity=0.164 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--cCCCE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--FQLPV 385 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~G~Pv 385 (474)
+++|+.+.+ .....++......|. .+.......+...++. ..|++++-..- .+.-|..+++.+. ...|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~i 76 (122)
T 1zgz_A 4 HIVIVEDEP----VTQARLQSYFTQEGY--TVSVTASGAGLREIMQNQSVDLILLDINL-PDENGLMLTRALRERSTVGI 76 (122)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHTTCCCEE
T ss_pred EEEEEECCH----HHHHHHHHHHHHCCC--eEEEecCHHHHHHHHhcCCCCEEEEeCCC-CCCChHHHHHHHHhcCCCCE
Confidence 566666653 355666666666553 4444443334444433 36887764331 3344666777664 35666
Q ss_pred EEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 386 LGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 386 I~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|.. ..... .+.+..|..+++..|-+ .+++..+|..++.
T Consensus 77 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLE--LRELVVRVKNLLW 118 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHhCHHHHccCCCC--HHHHHHHHHHHHH
Confidence 543 33322 23344577899999988 9999999987753
No 164
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=68.30 E-value=37 Score=25.81 Aligned_cols=66 Identities=6% Similarity=-0.019 Sum_probs=40.1
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHh---cCCCEEEc-CCC---CcceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 357 IDVLVQNSQARGECFGRITIEAMA---FQLPVLGT-AAG---GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.|++++-..- .+.-|..+++.+. .++|+|.. ... ...+.+..|..+++..|-+ .++|.++|..++.
T Consensus 50 ~dlvllD~~l-p~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 50 PNVLLTDVRM-PRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPID--PSEIMDALKQSIQ 122 (141)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 5887764331 3344666666653 46777654 322 2344555678899999988 9999999988764
No 165
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=68.18 E-value=6.4 Score=31.12 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=24.8
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+++++|+++.... .....+...|.+.|++|...+
T Consensus 34 ~~~~~Ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 67 (157)
T 3hzh_A 34 GIPFNVLIVDDSV------FTVKQLTQIFTSEGFNIIDTA 67 (157)
T ss_dssp TEECEEEEECSCH------HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCceEEEEEeCCH------HHHHHHHHHHHhCCCeEEEEE
Confidence 4568999998643 456677788888999986333
No 166
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=68.13 E-value=8.4 Score=29.13 Aligned_cols=41 Identities=5% Similarity=-0.066 Sum_probs=31.6
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|+|++|+....+.|.. .+-..+++.++...|++|.|+....
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehH
Confidence 3578998887666553 3667889999999999999988553
No 167
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=68.06 E-value=15 Score=31.16 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=42.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCc--EEEEEeCCCCCCchhhhhhcccchhccceeeeeh--h---------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGA--EVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA--K--------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 140 (474)
||||+++.+ |.......+.++|.+.++ +|..+..+.+... ........+++++.. .
T Consensus 1 m~rI~vl~S-----G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~ 69 (216)
T 2ywr_A 1 MLKIGVLVS-----GRGSNLQAIIDAIESGKVNASIELVISDNPKAY------AIERCKKHNVECKVIQRKEFPSKKEFE 69 (216)
T ss_dssp CEEEEEEEC-----SCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCH------HHHHHHHHTCCEEECCGGGSSSHHHHH
T ss_pred CCEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChH------HHHHHHHcCCCEEEeCcccccchhhhh
Confidence 368888864 223578888888888877 6654433322211 122234456665521 1
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
.....++..++|+|++-.
T Consensus 70 ~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAG 88 (216)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 123445568999999864
No 168
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=67.89 E-value=17 Score=31.18 Aligned_cols=74 Identities=16% Similarity=0.062 Sum_probs=43.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (474)
||||+++.. |....+..+.++|.+. +++|..+..+.+... ........+++++...
T Consensus 22 ~~rI~~l~S-----G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~ 90 (229)
T 3auf_A 22 MIRIGVLIS-----GSGTNLQAILDGCREGRIPGRVAVVISDRADAY------GLERARRAGVDALHMDPAAYPSRTAFD 90 (229)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCH------HHHHHHHTTCEEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchH------HHHHHHHcCCCEEEECcccccchhhcc
Confidence 578999875 2235677888888775 678754443322211 1223345566665311
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
.....++..++|+|++-.
T Consensus 91 ~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEcC
Confidence 123445568999999864
No 169
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=67.48 E-value=21 Score=27.06 Aligned_cols=110 Identities=12% Similarity=0.137 Sum_probs=66.0
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCC-----CCCchHHHHHHh
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARG-----ECFGRITIEAMA 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~-----E~~~~~~~EAma 380 (474)
..+++|+.+.+ .....++...++.|. .|......++....+.. .|++++-... . +.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~~-~~~~~~~~~g~~~~~~l~ 75 (140)
T 2qr3_A 3 LGTIIIVDDNK----GVLTAVQLLLKNHFS--KVITLSSPVSLSTVLREENPEVVLLDMNF-TSGINNGNEGLFWLHEIK 75 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTTSS--EEEEECCHHHHHHHHHHSCEEEEEEETTT-TC-----CCHHHHHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHHcCCCCEEEEeCCc-CCCCCCCccHHHHHHHHH
Confidence 35677777653 355666666666554 45544444444444443 4777664331 2 334556665543
Q ss_pred ---cCCCEEEcC-CCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 ---FQLPVLGTA-AGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 ---~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..+|+|... ... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 76 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 76 RQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWD--NQKLLETLLNAASQ 126 (140)
T ss_dssp HHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHTC
T ss_pred hhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCC--HHHHHHHHHHHHHh
Confidence 467877542 222 133344577899999988 99999999998864
No 170
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=67.39 E-value=25 Score=26.06 Aligned_cols=110 Identities=9% Similarity=0.090 Sum_probs=65.9
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc----
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF---- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~---- 381 (474)
..+++|+.+.+ .....+....+..|. ..+......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~ 79 (129)
T 1p6q_A 6 KIKVLIVDDQV----TSRLLLGDALQQLGF-KQITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQAVRANPAT 79 (129)
T ss_dssp CCCEEEECSSH----HHHHHHHHHHHTTTC-SCEECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHHHHTTCTTS
T ss_pred cCeEEEEcCCH----HHHHHHHHHHHHCCC-cEEEecCCHHHHHHHHHcCCCCEEEEeCCC-CCCCHHHHHHHHhcCccc
Confidence 35677777754 356667777776554 23444333334334443 35887764331 33456777777743
Q ss_pred -CCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 -QLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 -G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|.. ..+.. .+.+..|..+++..|-+ .+++..+|..++.
T Consensus 80 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 80 KKAAFIILTAQGDRALVQKAAALGANNVLAKPFT--IEKMKAAIEAVFG 126 (129)
T ss_dssp TTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSS--HHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 5667654 33221 23344577899999988 9999999987764
No 171
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=67.26 E-value=12 Score=27.83 Aligned_cols=74 Identities=7% Similarity=-0.015 Sum_probs=45.7
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhc--CCCEEEc
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAF--QLPVLGT 388 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~--G~PvI~s 388 (474)
+++++.|..+. -....+++.+++.|++-.+.-.+ ..+..+.+...|++++... =.+-..-++..+- |+||.+.
T Consensus 10 lL~C~aGmSTs-llv~km~~~a~~~gi~v~i~a~~-~~~~~~~~~~~DvvLLgPQ---V~y~~~~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 10 LVLCAGSGTSA-QLANAINEGANLTEVRVIANSGA-YGAHYDIMGVYDLIILAPQ---VRSYYREMKVDAERLGIQIVAT 84 (108)
T ss_dssp EEEESSSSHHH-HHHHHHHHHHHHHTCSEEEEEEE-TTSCTTTGGGCSEEEECGG---GGGGHHHHHHHHTTTTCEEEEC
T ss_pred EEECCCCCCHH-HHHHHHHHHHHHCCCceEEEEcc-hHHHHhhccCCCEEEEChH---HHHHHHHHHHHhhhcCCcEEEe
Confidence 45666665332 25678888899998753332222 3456667788999998654 2233444555543 8898876
Q ss_pred C
Q 011954 389 A 389 (474)
Q Consensus 389 ~ 389 (474)
+
T Consensus 85 ~ 85 (108)
T 3nbm_A 85 R 85 (108)
T ss_dssp C
T ss_pred C
Confidence 5
No 172
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=66.86 E-value=36 Score=25.57 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=64.2
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh-------cCCEEEEcCCCCCCCCchHHHHHHh-
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA-------SIDVLVQNSQARGECFGRITIEAMA- 380 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~-------~adv~v~ps~~~~E~~~~~~~EAma- 380 (474)
.+++|+.+.+ .....++...+..|.. .+......++..+.+. ..|++++=-.- .+.-|+.+++.+.
T Consensus 3 ~~ILivdD~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~m-p~~~G~~~~~~lr~ 76 (133)
T 2r25_B 3 VKILVVEDNH----VNQEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQM-PKVDGLLSTKMIRR 76 (133)
T ss_dssp SCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC-SSSCHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCCc-eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCChHHHHHHHHh
Confidence 3466666653 3556667776665542 3444443333333332 35888764331 2334666776664
Q ss_pred ---cCCCEEE-cCCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 ---FQLPVLG-TAAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 ---~G~PvI~-s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
...|||. |..... .+....|..|++..|-+ .++|.++|.+++.
T Consensus 77 ~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 126 (133)
T 2r25_B 77 DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK--RPKLKTILTEFCA 126 (133)
T ss_dssp HSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHCT
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 2467765 433332 23344577899999988 9999999988865
No 173
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=66.62 E-value=13 Score=32.35 Aligned_cols=40 Identities=13% Similarity=-0.073 Sum_probs=22.1
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|++++||+|.+...- .+...--....+.+.|++|.+++..
T Consensus 1 ~~~~~vL~v~aHPDD--e~l~~Ggtia~~~~~G~~V~vv~lT 40 (242)
T 2ixd_A 1 MSGLHILAFGAHADD--VEIGMAGTIAKYTKQGYEVGICDLT 40 (242)
T ss_dssp -CCCSEEEEESSTTH--HHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCccEEEEEeCCCh--HHHhHHHHHHHHHHCCCeEEEEEEc
Confidence 456789998864321 1111222223445679998888743
No 174
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=66.56 E-value=8.5 Score=32.33 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=30.3
Q ss_pred cCEEEEEecCCCC--CCh-hHHHHHHHHHHHhcC--cEEEEEeCC
Q 011954 74 SKLVLLVSHELSL--SGG-PLLLMELAFLLRGVG--AEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~--gG~-~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (474)
|||||+|.....+ +|. ...+..+++.+.+.| ++|.++...
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 4689999987665 554 366777888898887 999998754
No 175
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=66.52 E-value=9.1 Score=33.46 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=29.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
++||||+.+.+... ..-+..|+++|.+ +++|.|+.+.....
T Consensus 10 ~~m~ILlTNDDGi~---apGi~aL~~~l~~-~~~V~VVAP~~~~S 50 (261)
T 3ty2_A 10 PKLRLLLSNDDGVY---AKGLAILAKTLAD-LGEVDVVAPDRNRS 50 (261)
T ss_dssp -CCEEEEECSSCTT---CHHHHHHHHHHTT-TSEEEEEEESSCCT
T ss_pred CCCeEEEEcCCCCC---CHHHHHHHHHHHh-cCCEEEEecCCCCc
Confidence 46899988875322 2458899999987 78999999765443
No 176
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=66.32 E-value=38 Score=25.27 Aligned_cols=108 Identities=7% Similarity=0.016 Sum_probs=63.6
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~ 383 (474)
.+++|+.+.+ .....++...+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. .++
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (132)
T 3crn_A 4 KRILIVDDDT----AILDSTKQILEFEGY--EVEIAATAGEGLAKIENEFFNLALFXIKL-PDMEGTELLEKAHKLRPGM 76 (132)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSBC-SSSBHHHHHHHHHHHCTTS
T ss_pred cEEEEEeCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHHHHHhhCCCC
Confidence 3566777653 355666666666554 4444443333333332 35887764321 2334566666553 367
Q ss_pred CEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 384 PVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 384 PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|+|.- ..... .+.+..|..|++..|-+ .++|.++|..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSLNAGADAYIMKPVN--PRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHHhccchhhccCCCC--HHHHHHHHHHHHh
Confidence 77653 33322 23345577899999988 9999999988764
No 177
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=66.30 E-value=3.7 Score=34.31 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=29.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|||||+|......++ ......+++++++.|++|.++..
T Consensus 1 MmkiLiI~gsp~~~~-s~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 1 MPKTLIILAHPNISQ-STVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp -CCEEEEECCTTGGG-CSHHHHHHHHHTTCTTTEEEEEH
T ss_pred CCEEEEEEeCCCccH-HHHHHHHHHHHHhCCCeEEEEEc
Confidence 478999987554443 36788888999999999999873
No 178
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=66.28 E-value=13 Score=30.96 Aligned_cols=38 Identities=13% Similarity=-0.008 Sum_probs=27.4
Q ss_pred CEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||||+|......++.. ..+..+++.+ +.|++|.++...
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 7899999766555543 4555666666 789999998854
No 179
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=66.14 E-value=56 Score=27.37 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=67.3
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQ 382 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G 382 (474)
..+++|+.+.+ .....+....+..|. .|......++....+. ..|++++-..- .+.-|+.+++.+. .+
T Consensus 7 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDS----DVLASLERGLRLSGF--EVATAVDGAEALRSATENRPDAIVLDINM-PVLDGVSVVTALRAMDND 79 (233)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESSC-SSSCHHHHHHHHHHTTCC
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 45777777754 356667777776654 4444433333333333 35887764331 3445666776664 46
Q ss_pred CCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 383 LPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|+|.. .... ..+.+..|..|++..|-+ .++|..+|..++.
T Consensus 80 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFV--LAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTTTTTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 888754 2222 233445577899999988 9999999998875
No 180
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=66.11 E-value=54 Score=26.88 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=62.5
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEE-EecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc--CC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVH-FVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--QL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--G~ 383 (474)
.+++|+.+.+ .....+.......|. .+. ......+....+. ..|++++-..- .+.-|+.+++.+.. ..
T Consensus 14 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~~~~~dlvi~D~~~-p~~~g~~~~~~l~~~~~~ 86 (205)
T 1s8n_A 14 RRVLIAEDEA----LIRMDLAEMLREEGY--EIVGEAGDGQEAVELAELHKPDLVIMDVKM-PRRDGIDAASEIASKRIA 86 (205)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEECCH----HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhhcCCCEEEEeCCC-CCCChHHHHHHHHhcCCC
Confidence 4666666653 345556666665543 333 2333223333332 36777764331 33456666666542 34
Q ss_pred CEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 384 PVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
|+|.- .... ..+.+..|..+++..|-+ .++|..+|..++...
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFS--ISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCC--HHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 76643 3222 133445577899999988 999999999988643
No 181
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=65.99 E-value=11 Score=32.80 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=30.3
Q ss_pred cccCEEEEEecC----CCC----CChh-HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 72 MKSKLVLLVSHE----LSL----SGGP-LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 72 ~~~~kIl~v~~~----~~~----gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|.|+|||++... +.. .|.+ .-+......|.+.|++|++++..+.
T Consensus 1 m~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~ 53 (243)
T 1rw7_A 1 MAPKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK 53 (243)
T ss_dssp -CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCCceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 346799999874 221 4543 3455666788899999999997654
No 182
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=65.83 E-value=9.1 Score=33.14 Aligned_cols=40 Identities=5% Similarity=0.028 Sum_probs=30.5
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhc-CcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGV-GAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (474)
|||||+|......+|. ...+..+++.|.+. |++|.++...
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4689999876655554 46677788888887 9999998744
No 183
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=65.82 E-value=51 Score=27.92 Aligned_cols=108 Identities=10% Similarity=0.063 Sum_probs=67.8
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc--CCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--QLP 384 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--G~P 384 (474)
.+++|+.+.+ .....+....+..|. .|......++....+. ..|++++-..- .+.-|+.+++.+.. ++|
T Consensus 6 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~~~~~lr~~~~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDA----SLAEMLTIVLRGEGF--DTAVIGDGTQALTAVRELRPDLVLLDLML-PGMNGIDVCRVLRADSGVP 78 (238)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCCc
Confidence 4677777654 356667777776654 3555544444444443 36887764331 33456667766643 688
Q ss_pred EEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|.- .... ..+.+..|..|++..|-+ +++|..+|..++.
T Consensus 79 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 79 IVMLTAKTDTVDVVLGLESGADDYIMKPFK--PKELVARVRARLR 121 (238)
T ss_dssp EEEEEETTCCSCHHHHHHTTCCEEEEESCC--HHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 8754 2222 233445677899999988 9999999998875
No 184
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=65.77 E-value=6.9 Score=33.08 Aligned_cols=40 Identities=15% Similarity=-0.061 Sum_probs=30.1
Q ss_pred cCEEEEEecCCCC-CCh-hHHHHHHHHHHHhc--CcEEEEEeCC
Q 011954 74 SKLVLLVSHELSL-SGG-PLLLMELAFLLRGV--GAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~-gG~-~~~~~~l~~~L~~~--G~~V~v~~~~ 113 (474)
|||||+|...... +|. ...+..+++.+.+. |++|.++-..
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 5789999976655 444 36677788888887 9999998854
No 185
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=65.33 E-value=18 Score=30.64 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=43.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (474)
||||.++.. |.+..+..+.++|.+. +++|..+..+.+... ........+++++...
T Consensus 3 m~ki~vl~s-----G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~------v~~~A~~~gIp~~~~~~~~~~~~~~~~ 71 (212)
T 3av3_A 3 MKRLAVFAS-----GSGTNFQAIVDAAKRGDLPARVALLVCDRPGAK------VIERAARENVPAFVFSPKDYPSKAAFE 71 (212)
T ss_dssp CEEEEEECC-----SSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCH------HHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEE-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcH------HHHHHHHcCCCEEEeCcccccchhhhH
Confidence 467877764 2235677788888776 688865543332211 1223345566664311
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
......+..+||+|++-.
T Consensus 72 ~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEch
Confidence 223445668999999864
No 186
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=65.27 E-value=72 Score=28.04 Aligned_cols=225 Identities=7% Similarity=-0.038 Sum_probs=106.3
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
+.++|+++.+.....-....+..+.+++.+.|+++.++....... .... . ........++|
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~-----------------~-~i~~l~~~~vd 63 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDI-QEQI-----------------T-VLEQAIAKNPA 63 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCH-HHHH-----------------H-HHHHHHHHCCS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCH-HHHH-----------------H-HHHHHHHhCCC
Confidence 357899999865433234566777778888999999865332210 0000 0 11122346899
Q ss_pred EEEEcccchh---hHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCCC
Q 011954 153 LVVLNTAVAG---KWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIRM 229 (474)
Q Consensus 153 iV~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (474)
.|++...... ..+..+... ..|++..-...... .....+..+.........+.+.+.++ ..
T Consensus 64 giIi~~~~~~~~~~~~~~~~~~-----~iPvV~~~~~~~~~----------~~~~~V~~d~~~~g~~~~~~l~~~~~-g~ 127 (305)
T 3g1w_A 64 GIAISAIDPVELTDTINKAVDA-----GIPIVLFDSGAPDS----------HAHSFLGTNNYNAGMNAAYKMAELLD-GE 127 (305)
T ss_dssp EEEECCSSTTTTHHHHHHHHHT-----TCCEEEESSCCTTS----------CCSCEEECCHHHHHHHHHHHHHHHTT-TC
T ss_pred EEEEcCCCHHHHHHHHHHHHHC-----CCcEEEECCCCCCC----------ceeEEECcCHHHHHHHHHHHHHHHhC-CC
Confidence 8887643322 122222222 23555432221110 01222333333333444444444432 23
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcE
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSM 309 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~ 309 (474)
.++-++. |.+.. ..... ...-++.++ +.+.+. .......+.... +...+++.++.+ +++++
T Consensus 128 ~~i~~i~-~~~~~----~~~~R-~~gf~~~l~-~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~l~-------~~~~~ 188 (305)
T 3g1w_A 128 GEVAVIT-LPNQL----NHQER-TTGFKETLE-AEFPAI-EVIAVEDGRGDS----LHSRRVAHQLLE-------DYPNL 188 (305)
T ss_dssp EEEEEEE-CTTCH----HHHHH-HHHHHHHHH-HHCTTE-EEEEEEECTTCH----HHHHHHHHHHHH-------HCTTE
T ss_pred cEEEEEe-CCCcc----cHHHH-HHHHHHHHH-hhCCCC-EEEEEecCCCCH----HHHHHHHHHHHH-------hCCCc
Confidence 4566665 32211 11000 000012222 234322 222233444433 334444555444 34788
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCCh--HHHHhc
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTV--SPYLAS 356 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~--~~~~~~ 356 (474)
..+++.++. ....+.+.+++.|+.+.|.+.|+.... ...+..
T Consensus 189 ~ai~~~~d~-----~a~g~~~al~~~g~~~di~vig~d~~~~~~~~~~~ 232 (305)
T 3g1w_A 189 AGIFATEAN-----GGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDE 232 (305)
T ss_dssp EEEEESSHH-----HHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHT
T ss_pred eEEEECCCc-----chhhHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHc
Confidence 888888752 455667778888887778888875332 444443
No 187
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=65.16 E-value=17 Score=30.62 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=44.0
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhhhhcccchhccceeeeehh---------
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK--------- 140 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 140 (474)
|.++||+++.+ |.+..+..+.+++.+.+ ++|..+..+.+.... .+.-...|++++...
T Consensus 5 m~~~ri~vl~S-----G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~------l~~A~~~gIp~~~~~~~~~~~r~~ 73 (209)
T 4ds3_A 5 MKRNRVVIFIS-----GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGG------LAKAEAAGIATQVFKRKDFASKEA 73 (209)
T ss_dssp -CCEEEEEEES-----SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCGGGSSSHHH
T ss_pred CCCccEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHH------HHHHHHcCCCEEEeCccccCCHHH
Confidence 55678988875 33467888888886643 677655543332211 122344566655321
Q ss_pred ---cHHHHhhhcCCCEEEEcc
Q 011954 141 ---GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 ---~~~~~~~~~~~DiV~~~~ 158 (474)
.....++..++|+|++-.
T Consensus 74 ~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 74 HEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEec
Confidence 223455668999999864
No 188
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=65.03 E-value=8.9 Score=33.99 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=25.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|++|+|+++. . | ..=..+++.|.+.||+|.+++...
T Consensus 1 M~~~~ilVtG---a-G---~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 1 MSLSKILIAG---C-G---DLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp -CCCCEEEEC---C-S---HHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCCcEEEEC---C-C---HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5567888774 1 3 344567788888999999998653
No 189
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=64.78 E-value=28 Score=26.32 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=63.2
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh-----c
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA-----F 381 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma-----~ 381 (474)
.+++|+.+.+ .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (138)
T 3c3m_A 4 YTILVVDDSP----MIVDVFVTMLERGGY--RPITAFSGEECLEALNATPPDLVLLDIMM-EPMDGWETLERIKTDPATR 76 (138)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSTTTT
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHcCcccC
Confidence 3566777653 355666777766654 3444333333333333 35887764331 3445677777764 2
Q ss_pred CCCEEEc-CCCCcce-eeee--CCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 382 QLPVLGT-AAGGTME-IVVN--GTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 382 G~PvI~s-~~~g~~e-~v~~--~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
.+|+|.. ....... ...- +..+++..|-+ .++|.++|..++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~--~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 77 DIPVLMLTAKPLTPEEANEYGSYIEDYILKPTT--HHQLYEAIEHVLAR 123 (138)
T ss_dssp TSCEEEEESSCCCHHHHHHTTTTCSEEEECCCH--HHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHhhcCHhheEeCCCC--HHHHHHHHHHHHHH
Confidence 5788653 3332211 1111 23689999988 99999999988764
No 190
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=64.66 E-value=28 Score=28.91 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=39.5
Q ss_pred cCCEEEEcCCCCCCCCchHHHHHHh-------cCCCEEEcC-CC-C---cceeeeeCCceeeecCCCCChHHHHHHHHHH
Q 011954 356 SIDVLVQNSQARGECFGRITIEAMA-------FQLPVLGTA-AG-G---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKL 423 (474)
Q Consensus 356 ~adv~v~ps~~~~E~~~~~~~EAma-------~G~PvI~s~-~~-g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (474)
..|++++=..- .+.-|+.+++.+. ..+|||... .. . ..+.+..|..+++..|- ++|.++|..+
T Consensus 119 ~~dlillD~~l-p~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~----~~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQM-PEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL----NQLANVIREI 193 (206)
T ss_dssp SCSEEEEESCC-SSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTC----TTHHHHHHHH
T ss_pred CCCEEEEcCCC-CCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcH----HHHHHHHHHH
Confidence 35777764331 3445666666654 467887543 22 2 12334457788999874 4899999988
Q ss_pred hhCHH
Q 011954 424 ATHVE 428 (474)
Q Consensus 424 l~~~~ 428 (474)
+....
T Consensus 194 l~~~~ 198 (206)
T 3mm4_A 194 ESKRH 198 (206)
T ss_dssp C----
T ss_pred HhhhH
Confidence 86443
No 191
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=64.63 E-value=9.4 Score=34.10 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=25.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||||+.. |..-.=..|++.|.++||+|++++..
T Consensus 1 MkILVTG------atGfIG~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGG------GTGFIGTALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEEC------CCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6787653 33456678899999999999999854
No 192
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=64.60 E-value=12 Score=33.12 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=41.7
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceee---ee--CCceeeecCCC
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIV---VN--GTTGLLHPTGK 410 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v---~~--~~~G~l~~~~d 410 (474)
+++.+++..+|++|-.+. .+..--.+..++..|+|+|...+|-..+.. .+ .+.++++.++-
T Consensus 65 ~dl~~ll~~~DVVIDfT~--p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~~~vv~a~N~ 130 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTL--PEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEKIALVFSANM 130 (272)
T ss_dssp CCHHHHHHHCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTTSEEEECSCC
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhccCCEEEECCC
Confidence 678888899999998776 555444566889999999997766433311 11 24566666653
No 193
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=64.57 E-value=43 Score=30.48 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++.+-+. ..+..++.+++++.. .+ ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 32 ~~~~~vav~d~------~~~~~~~~a~~~g~~-~~-----~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~G~~ 97 (346)
T 3cea_A 32 QGVKLVAACAL------DSNQLEWAKNELGVE-TT-----YTNYKDMIDTENIDAIFIVAP--TPFHPEMTIYAMNAGLN 97 (346)
T ss_dssp SSEEEEEEECS------CHHHHHHHHHTTCCS-EE-----ESCHHHHHTTSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEecC------CHHHHHHHHHHhCCC-cc-----cCCHHHHhcCCCCCEEEEeCC--hHhHHHHHHHHHHCCCE
Confidence 67887755554 345666777777642 11 246777876 6899998775 33334456789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 98 v~~eK 102 (346)
T 3cea_A 98 VFCEK 102 (346)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99853
No 194
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=64.18 E-value=38 Score=24.82 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=63.3
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHh---cCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMA---FQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma---~G~ 383 (474)
.+++|+.+.+ .....++...+..|. .+......++....+ ...|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (124)
T 1srr_A 4 EKILIVDDQS----GIRILLNEVFNKEGY--QTFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKRMKVIDENI 76 (124)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHHHHHHCTTC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHHhCCCC
Confidence 3567777653 355666666666553 344333333333333 246887764331 2334556666553 467
Q ss_pred CEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 384 PVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 384 PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|+|.. ..... .+....|..+++..|-+ .+++.+++..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQESKELGALTHFAKPFD--IDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCCCEEESSCC--HHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHHHhcChHhhccCCCC--HHHHHHHHHHHhc
Confidence 77653 33322 23344577899999988 9999999988765
No 195
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=63.78 E-value=4.6 Score=33.73 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=39.3
Q ss_pred HHHHhcCCEEEEcCCCCCCCCch--HHHHHHhcCCCEEEcCCCCc-ceee----e------eCCceeeecCCCCChHHHH
Q 011954 351 SPYLASIDVLVQNSQARGECFGR--ITIEAMAFQLPVLGTAAGGT-MEIV----V------NGTTGLLHPTGKEGVTPLA 417 (474)
Q Consensus 351 ~~~~~~adv~v~ps~~~~E~~~~--~~~EAma~G~PvI~s~~~g~-~e~v----~------~~~~G~l~~~~d~~~~~la 417 (474)
.-+...||.+|... .|+|. .+.||+..|+||++-+..|. .+.+ . ......+.-.+| ++++.
T Consensus 113 ~~m~~~sda~Ivlp----GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~--~ee~~ 186 (195)
T 1rcu_A 113 FVLLRNADVVVSIG----GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWT--VEEAV 186 (195)
T ss_dssp HHHHTTCSEEEEES----CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESS--HHHHH
T ss_pred HHHHHhCCEEEEec----CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCC--HHHHH
Confidence 34567899887642 23453 57789999999999975443 3222 1 111122333333 78887
Q ss_pred HHHHHH
Q 011954 418 NNIVKL 423 (474)
Q Consensus 418 ~~i~~l 423 (474)
+.|.++
T Consensus 187 ~~l~~~ 192 (195)
T 1rcu_A 187 QIIEQI 192 (195)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 777543
No 196
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=63.70 E-value=24 Score=31.97 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=24.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhc-C-cEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-AEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~ 113 (474)
|++||||++.. |. + ..+++.|.+. | ++|.++...
T Consensus 2 m~~~~Ili~g~-----g~-~--~~l~~~l~~~~~~~~v~~~d~~ 37 (331)
T 2pn1_A 2 MQKPHLLITSA-----GR-R--AKLVEYFVKEFKTGRVSTADCS 37 (331)
T ss_dssp TTCCEEEEESC-----TT-C--HHHHHHHHHHCCSSEEEEEESC
T ss_pred CccceEEEecC-----Cc-h--HHHHHHHHHhcCCCEEEEEeCC
Confidence 77899999753 22 2 4788888875 6 888887654
No 197
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=63.56 E-value=25 Score=25.99 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=62.7
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh-----cC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA-----FQ 382 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma-----~G 382 (474)
+++|+.+.+ .....+....+..|. .+......++....+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 76 (127)
T 2jba_A 4 RILVVEDEA----PIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWPDLILLAWML-PGGSGIQFIKHLRRESMTRD 76 (127)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHTTCSSSCCSEEEEESEE-TTEEHHHHHHHHHTSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhCcccCC
Confidence 566777653 355666777766654 3443333222222222 35777764321 2334666777664 35
Q ss_pred CCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 383 LPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|+|.- .... ..+.+..|..+++..|-+ .+++.+++..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 121 (127)
T 2jba_A 77 IPVVMLTARGEEEDRVRGLETGADDCITKPFS--PKELVARIKAVMR 121 (127)
T ss_dssp SCEEEEEETTHHHHHHTTCCCSCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHh
Confidence 787653 3221 233455677899999988 9999999988764
No 198
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=63.55 E-value=9.1 Score=34.14 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=28.5
Q ss_pred cccCEEEEEecCCCCCCh--hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGG--PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~--~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|.|+||+.|.. ..||. .....+|+.+|++.|+.|.++-.+.
T Consensus 1 M~M~kvI~v~s--~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 1 MAETRVIVVGN--EKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp ---CEEEEECC--SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCeEEEEEc--CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44566666654 23444 4789999999999999999987554
No 199
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=63.45 E-value=22 Score=26.14 Aligned_cols=31 Identities=35% Similarity=0.337 Sum_probs=22.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
.++|+++.... .....+...|.+.|++|...
T Consensus 2 ~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 32 (120)
T 3f6p_A 2 DKKILVVDDEK------PIADILEFNLRKEGYEVHCA 32 (120)
T ss_dssp CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCH------HHHHHHHHHHHhCCEEEEEe
Confidence 46899998643 45566777888899998754
No 200
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=63.32 E-value=33 Score=31.16 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++++++++.. ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 89 (331)
T 4hkt_A 26 ADARLVAVADA------FPAAAEAIAGAYGCE--------VRTIDAIEAAADIDAVVICTP--TDTHADLIERFARAGKA 89 (331)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCE--------ECCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC--------cCCHHHHhcCCCCCEEEEeCC--chhHHHHHHHHHHcCCc
Confidence 78888755543 355667777777642 357788887 7899988775 34344467789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 90 v~~EK 94 (331)
T 4hkt_A 90 IFCEK 94 (331)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99864
No 201
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=63.28 E-value=21 Score=32.89 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=25.8
Q ss_pred cccccCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCC
Q 011954 70 NFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQK 114 (474)
Q Consensus 70 ~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 114 (474)
..|++|+||++.. ....=..+++.|.+. ||+|.++....
T Consensus 20 ~~m~~~~vlVtGa------tG~iG~~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 20 GSMKAKKVLILGV------NGFIGHHLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp ---CCCEEEEESC------SSHHHHHHHHHHHHHSSCEEEEEESCC
T ss_pred cccCCCEEEEECC------CChHHHHHHHHHHhCCCCEEEEEeCCh
Confidence 4466788887643 224556777888887 99999998653
No 202
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=62.99 E-value=45 Score=24.89 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=64.7
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~ 383 (474)
.+++|+.+.+ .....+.......|. .+......++....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (136)
T 1mvo_A 4 KKILVVDDEE----SIVTLLQYNLERSGY--DVITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCKQLRQQKLMF 76 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCc--EEEEecCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHcCCCCC
Confidence 4567777653 345666666666654 3444443333333332 46887764331 3334666666553 457
Q ss_pred CEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 384 PVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 384 PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
|+|.. ..+.. .+.+..|..+++..|-+ .+++..++..++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLGLELGADDYMTKPFS--PREVNARVKAILRR 121 (136)
T ss_dssp CEEEEECTTCCCCHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHhCCCCEEEECCCC--HHHHHHHHHHHHHh
Confidence 77653 33222 22344577899999988 99999999888764
No 203
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=62.73 E-value=13 Score=27.73 Aligned_cols=55 Identities=11% Similarity=0.257 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQ 365 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~ 365 (474)
-++++|.|..+..-....+++.+++.|+...|.-.+ ..++...+..+|+++.+..
T Consensus 24 IlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~-~~~~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 24 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR-VNEIETYMDGVHLICTTAR 78 (113)
T ss_dssp EEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEEC-TTTTTTSTTSCSEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEec-HHHHhhccCCCCEEEECCc
Confidence 466777776444324688888899988864444443 3344455678999988765
No 204
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=62.45 E-value=11 Score=33.42 Aligned_cols=43 Identities=26% Similarity=0.166 Sum_probs=33.2
Q ss_pred cccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+.+|||++|......+|.. ..+..+++.+.+.|++|.++-...
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~d 99 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSD 99 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTT
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhc
Confidence 3578999999877766664 556677888888899999987543
No 205
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=62.45 E-value=8.5 Score=32.00 Aligned_cols=40 Identities=13% Similarity=-0.060 Sum_probs=29.9
Q ss_pred cCEEEEEecCCCC-CCh-hHHHHHHHHHHHhcC--cEEEEEeCC
Q 011954 74 SKLVLLVSHELSL-SGG-PLLLMELAFLLRGVG--AEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~-gG~-~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (474)
|||||+|...... +|. ...+..+++.+.+.| ++|.++...
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4789999976554 344 466778888898876 999988854
No 206
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=62.42 E-value=10 Score=31.91 Aligned_cols=39 Identities=21% Similarity=0.004 Sum_probs=28.1
Q ss_pred ccCEEEEEecCCCCCChhHH--HHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLL--LMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
+++||++-.. ||+..+ ..++.+.|.+.|++|.++.....
T Consensus 4 ~~k~IllgiT----Gsiaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFT----GSHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TTCEEEEEEC----SCGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCCEEEEEEE----ChHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 3578877665 333444 78999999999999999886544
No 207
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=62.22 E-value=11 Score=27.85 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=29.3
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.+|||+++|...- +....+..+-+.+.++|.++.+....
T Consensus 1 M~mkkIll~Cg~G~--sTS~l~~k~~~~~~~~gi~~~i~a~~ 40 (106)
T 1e2b_A 1 MEKKHIYLFSSAGM--STSLLVSKMRAQAEKYEVPVIIEAFP 40 (106)
T ss_dssp CCCEEEEEECSSST--TTHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CCCcEEEEECCCch--hHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 55788999997322 22366778888999999998887644
No 208
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=62.18 E-value=23 Score=32.33 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=42.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeeh-----hcHHHHh
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA-----KGEKAIN 146 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 146 (474)
|.+|+|+++.. ....=..+++.|.+.||+|.+++.......... . ....+...++.++.. ..+....
T Consensus 8 M~~~~IlVtGa------tG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~-~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 8 SPKGRVLIAGA------TGFIGQFVATASLDAHRPTYILARPGPRSPSKA-K-IFKALEDKGAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp ---CCEEEECT------TSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-H-HHHHHHHTTCEEEECCTTCHHHHHHHH
T ss_pred CCCCeEEEECC------CcHHHHHHHHHHHHCCCCEEEEECCCCCChhHH-H-HHHHHHhCCcEEEEeecCCHHHHHHHH
Confidence 44678887753 224455677788889999999986542211111 0 111222334444432 2234444
Q ss_pred hhcCCCEEEEccc
Q 011954 147 TALNADLVVLNTA 159 (474)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (474)
...++|+|+....
T Consensus 80 ~~~~~d~Vi~~a~ 92 (346)
T 3i6i_A 80 KEHEIDIVVSTVG 92 (346)
T ss_dssp HHTTCCEEEECCC
T ss_pred hhCCCCEEEECCc
Confidence 4458999876543
No 209
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=62.02 E-value=18 Score=27.31 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcC-CCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhc--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKK-IQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAF-- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~-- 381 (474)
...+++|+.+.+ .....++...++.| . .|......++....+ ...|++++-..- .+.-|..+++.+..
T Consensus 13 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 13 KRKQVALFSSDP----NFKRDVATRLDALAIY--DVRVSETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALW 85 (135)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHHHTSSE--EEEEECGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGG
T ss_pred CCcEEEEEcCCH----HHHHHHHHHHhhcCCe--EEEEeccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhC
Confidence 345777887754 35667777777765 3 344443333333332 235777763221 23345555554433
Q ss_pred -CCCEEEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 -QLPVLGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 -G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.+|+|... .... .+.+..|..+++..|-+ .++|..+|..++.
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 132 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLD--GKELLNAVTFHDT 132 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTC-
T ss_pred CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCC--HHHHHHHHHHHhc
Confidence 67887643 2221 23344577899999988 9999999988765
No 210
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=61.99 E-value=17 Score=33.84 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=59.8
Q ss_pred CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC
Q 011954 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL 348 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (474)
.++.|+.+|-=.-.+. -++++..+...+. ..++++++=+-+. ..+..++.+++++.+. + ..
T Consensus 24 kkirvgiIG~G~ig~~---H~~a~~~~~~~~~----~~~~~~lvav~d~------~~~~a~~~a~~~g~~~-~-----y~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKC---HALAWNAVKTVFG----DVERPRLVHLAEA------NAGLAEARAGEFGFEK-A-----TA 84 (393)
T ss_dssp CCCEEEEECCSHHHHH---HHHHHTTHHHHHC----SSCCCEEEEEECC--------TTHHHHHHHHTCSE-E-----ES
T ss_pred CCccEEEEcCCHHHHH---HHHHHHhhhhhhc----cCCCcEEEEEECC------CHHHHHHHHHHhCCCe-e-----cC
Confidence 4567777773222222 2334433322221 3367788766654 3455677788887641 1 25
Q ss_pred ChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 349 TVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 349 ~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
++.++++. .|+++..+. ...-.-.+++|+.+|++|++-.
T Consensus 85 d~~ell~~~~iDaV~IatP--~~~H~~~a~~al~aGkhVl~EK 125 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTP--NQFHAEMAIAALEAGKHVWCEK 125 (393)
T ss_dssp CHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCcEEEECCC--hHHHHHHHHHHHhcCCeEEEcc
Confidence 77888864 688888775 3333446789999999998864
No 211
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=61.80 E-value=42 Score=30.91 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=58.9
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT 349 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (474)
++.++.+|-- .-+...++.++. . ++++++-+-+. ..+..++.+++++... ...+
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~---~---------~~~~lvav~d~------~~~~a~~~a~~~~~~~------~~~~ 79 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLL---R---------AGARLAGFHEK------DDALAAEFSAVYADAR------RIAT 79 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHH---H---------TTCEEEEEECS------CHHHHHHHHHHSSSCC------EESC
T ss_pred CcEEEEECcC--HHHHHHHHHHhh---c---------CCcEEEEEEcC------CHHHHHHHHHHcCCCc------ccCC
Confidence 4667777731 223333444442 1 67888866664 3566777888876321 1357
Q ss_pred hHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 350 VSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 350 ~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
+.+++.. .|+++..+. ...-.-.+.+|+.+|++|++-.
T Consensus 80 ~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 80 AEEILEDENIGLIVSAAV--SSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp HHHHHTCTTCCEEEECCC--HHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCeEEEeC
Confidence 8888875 788888775 3333345678999999999864
No 212
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=61.57 E-value=15 Score=28.48 Aligned_cols=42 Identities=10% Similarity=-0.069 Sum_probs=30.3
Q ss_pred ccCEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
+++|++|+....+. +.+ .....++....+.||+|.++....+
T Consensus 14 ~~~kl~ii~~sgP~-~~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 14 QXXXILIVVTHGPE-DLDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp CCCEEEEEECCCGG-GTHHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred ccceEEEEEccCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 35788888875433 333 5577888888899999999886543
No 213
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=61.55 E-value=35 Score=31.98 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=49.2
Q ss_pred ccCEEEEEecCCC-CCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCC
Q 011954 73 KSKLVLLVSHELS-LSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 73 ~~~kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
+.+||+++..... .|-+.+++..++.++...|.+|.++++..-....+............|..+......... -...
T Consensus 190 ~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~ea--v~~a 267 (399)
T 3q98_A 190 KGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEA--FKDA 267 (399)
T ss_dssp TTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHH--HTTC
T ss_pred CCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHH--hCCC
Confidence 3568999865432 243457899999999999999999997643322222221111222334433222222221 2578
Q ss_pred CEEEEccc
Q 011954 152 DLVVLNTA 159 (474)
Q Consensus 152 DiV~~~~~ 159 (474)
|+|+....
T Consensus 268 DvVytd~W 275 (399)
T 3q98_A 268 DIVYPKSW 275 (399)
T ss_dssp SEEEECCC
T ss_pred CEEEecCc
Confidence 99888653
No 214
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=61.28 E-value=21 Score=32.32 Aligned_cols=37 Identities=27% Similarity=0.060 Sum_probs=24.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|+.|+|++.. |....=..+++.|.+.|++|.++....
T Consensus 1 m~~~~vlVtG------atG~iG~~l~~~L~~~G~~V~~~~r~~ 37 (345)
T 2z1m_A 1 MSGKRALITG------IRGQDGAYLAKLLLEKGYEVYGADRRS 37 (345)
T ss_dssp --CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCCCEEEEEC------CCChHHHHHHHHHHHCCCEEEEEECCC
Confidence 3456777653 223455677888888999999987543
No 215
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=61.12 E-value=12 Score=31.13 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=27.4
Q ss_pred ccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||||+++......+|.. ..+..+++.+. .|++|.++...
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCS
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCc
Confidence 367999999876666654 45555666665 68999988754
No 216
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=60.77 E-value=15 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=28.9
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||+++... ..|..+..+..+++.|.+.|++|.++...
T Consensus 1 Mkv~IvY~S-~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYLS-DYGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEECT-TSTTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEEC-CChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 567777642 23666789999999999999999888654
No 217
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=60.52 E-value=11 Score=31.37 Aligned_cols=40 Identities=18% Similarity=-0.002 Sum_probs=28.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|+|+|++++.....+...+.+.+.+..+.+.|+++.++..
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl 40 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHI 40 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEec
Confidence 4678999988777776555555555566667899998863
No 218
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=60.47 E-value=9.7 Score=31.42 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=29.6
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHh-cCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRG-VGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~-~G~~V~v~~~~ 113 (474)
||||+++... ..|. +..+..+++.|.+ .|++|.++...
T Consensus 4 M~kiliiy~S--~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~ 43 (188)
T 2ark_A 4 MGKVLVIYDT--RTGNTKKMAELVAEGARSLEGTEVRLKHVD 43 (188)
T ss_dssp CEEEEEEECC--SSSHHHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CCEEEEEEEC--CCcHHHHHHHHHHHHHhhcCCCeEEEEEhh
Confidence 5689988754 4444 6788889999998 89999988754
No 219
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=60.44 E-value=52 Score=24.81 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=63.9
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHc-CCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF-- 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~-- 381 (474)
...+++|+.+.+ .....+....... +. ..+.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 8 EKMKVIIVEDEF----LAQQELSWLINTHSQM-EIVGSFDDGLDVLKFLQHNKVDAIFLDINI-PSLDGVLLAQNISQFA 81 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHCCCSEEEECSSC-SSSCHHHHHHHHTTST
T ss_pred CceEEEEEcCCH----HHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHccC
Confidence 346778887754 3556666666655 22 11222223233333333 36888775431 34456777777754
Q ss_pred -CCCEE-EcCCCC-cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 -QLPVL-GTAAGG-TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 -G~PvI-~s~~~g-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..|+| .+.... ..+.+..|..+++..|-+ .++|..+|..++.
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 82 HKPFIVFITAWKEHAVEAFELEAFDYILKPYQ--ESRIINMLQKLTT 126 (143)
T ss_dssp TCCEEEEEESCCTTHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 33444 333322 233445577899999988 9999999988875
No 220
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=60.36 E-value=11 Score=32.20 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=25.0
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.++.|+|++.. |....=..+++.|.+.|++|.+++..
T Consensus 18 ~l~~~~ilVtG------atG~iG~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 18 YFQGMRVLVVG------ANGKVARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp ---CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcCCCeEEEEC------CCChHHHHHHHHHHhCCCeEEEEECC
Confidence 34578887764 22345567788888999999999854
No 221
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=60.26 E-value=24 Score=31.97 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=42.7
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh----hhhcccchhccceeeeehh-----cHH
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV----IYSLEHKMLDRGVQVLSAK-----GEK 143 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~ 143 (474)
++|||+|+... .+.....++|.+.||+|..+..+.+...... ...........+++++... ...
T Consensus 2 ~~mrIvf~Gt~-------~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 74 (314)
T 1fmt_A 2 ESLRIIFAGTP-------DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQ 74 (314)
T ss_dssp CCCEEEEEECS-------HHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHH
T ss_pred CCCEEEEEecC-------HHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHH
Confidence 35889998862 3444445666677999875554322111100 0112233345566665432 233
Q ss_pred HHhhhcCCCEEEEcc
Q 011954 144 AINTALNADLVVLNT 158 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (474)
..++..++|++++-.
T Consensus 75 ~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 75 QLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHTTCSEEEEES
T ss_pred HHHHhcCCCEEEEee
Confidence 455678999998864
No 222
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=60.22 E-value=15 Score=30.98 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=27.8
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|||++-.. |+. .....+|++.|.+.|++|+++...
T Consensus 3 ~~k~IllgvT----Gaiaa~k~~~ll~~L~~~g~eV~vv~T~ 40 (209)
T 3zqu_A 3 GPERITLAMT----GASGAQYGLRLLDCLVQEEREVHFLISK 40 (209)
T ss_dssp SCSEEEEEEC----SSSCHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCCEEEEEEE----CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3567876664 222 366889999999999999998854
No 223
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=60.17 E-value=59 Score=29.56 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++++++++. .. ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 27 ~~~~l~av~d~------~~~~~~~~a~~~g~----~~---~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 91 (344)
T 3euw_A 27 PDLELVVIADP------FIEGAQRLAEANGA----EA---VASPDEVFARDDIDGIVIGSP--TSTHVDLITRAVERGIP 91 (344)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHTTTC----EE---ESSHHHHTTCSCCCEEEECSC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcCC----ce---eCCHHHHhcCCCCCEEEEeCC--chhhHHHHHHHHHcCCc
Confidence 77888755543 35566777777652 11 257788888 7899998776 44444467789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 92 v~~EK 96 (344)
T 3euw_A 92 ALCEK 96 (344)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99865
No 224
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=60.14 E-value=70 Score=26.17 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=65.4
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~ 383 (474)
.+++|+.+.+ .....+.......|. .|......++....+. ..|++++--.- .+.-|+.+++.+. .++
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~~ 77 (208)
T 1yio_A 5 PTVFVVDDDM----SVREGLRNLLRSAGF--EVETFDCASTFLEHRRPEQHGCLVLDMRM-PGMSGIELQEQLTAISDGI 77 (208)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHCCTTSCEEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEcCCHHHHHHhhhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 4677777654 356666777766553 3444333333333332 25777653321 3445667776654 467
Q ss_pred CEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 384 PVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
|+|.- .... ..+.+..|..|++..|-+ .+++..+|..++..
T Consensus 78 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 78 PIVFITAHGDIPMTVRAMKAGAIEFLPKPFE--EQALLDAIEQGLQL 122 (208)
T ss_dssp CEEEEESCTTSCCCHHHHHTTEEEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHHhh
Confidence 88654 3222 233344577899999988 99999999988764
No 225
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=60.11 E-value=39 Score=31.01 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=47.8
Q ss_pred CCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHhcCC
Q 011954 306 VPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMAFQL 383 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma~G~ 383 (474)
.++++++-+-+. ..+..++.++++++. ...++.+++ ...|+++..+. ...-.-.+.+|+..|+
T Consensus 27 ~~~~~lvav~d~------~~~~~~~~~~~~g~~-------~~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk 91 (354)
T 3db2_A 27 SEKLKLVTCYSR------TEDKREKFGKRYNCA-------GDATMEALLAREDVEMVIITVP--NDKHAEVIEQCARSGK 91 (354)
T ss_dssp CSSEEEEEEECS------SHHHHHHHHHHHTCC-------CCSSHHHHHHCSSCCEEEECSC--TTSHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECC------CHHHHHHHHHHcCCC-------CcCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCC
Confidence 368888755553 356667777777653 136788888 45899888775 3333445678999999
Q ss_pred CEEEcC
Q 011954 384 PVLGTA 389 (474)
Q Consensus 384 PvI~s~ 389 (474)
+|++-.
T Consensus 92 ~vl~EK 97 (354)
T 3db2_A 92 HIYVEK 97 (354)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999865
No 226
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=60.02 E-value=56 Score=27.93 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHh---cCCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 357 IDVLVQNSQARGECFGRITIEAMA---FQLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.|++++--.- .+.-|+.+++.+. ..+|||.- ..... .+.+..|..+++..|-+ .++|..+|..++.
T Consensus 68 ~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~--~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 68 PDAVILDVXM-PGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFS--LEEVVARLRVILR 140 (250)
T ss_dssp CSEEEEESCC-SSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 5777664321 3445666666654 35777654 33322 23345577899999988 9999999998875
No 227
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=60.02 E-value=17 Score=33.25 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=26.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|++|+||++. |....=..+++.|.+.||+|.++.....
T Consensus 23 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 23 FSPKTWLITG------VAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp HSCCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCCCeEEEEC------CCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3457777654 3334566788888899999999986543
No 228
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=59.91 E-value=7.7 Score=37.72 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=27.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+++|+++. ++..|--.-+..|++.|.++||+|++++.
T Consensus 8 ~~~vl~~p--~p~~GHi~P~l~La~~L~~rG~~VT~v~t 44 (482)
T 2pq6_A 8 KPHVVMIP--YPVQGHINPLFKLAKLLHLRGFHITFVNT 44 (482)
T ss_dssp CCEEEEEC--CSSHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEec--CccchhHHHHHHHHHHHHhCCCeEEEEeC
Confidence 46788876 22233336689999999999999999883
No 229
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=59.89 E-value=22 Score=32.65 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=57.9
Q ss_pred CCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCC
Q 011954 269 DDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTL 348 (474)
Q Consensus 269 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (474)
.++.++++|-=.- |...+++++.+ .++++++-+-+. ..+..++.++++++. . ..
T Consensus 26 ~~~rigiIG~G~~--g~~~~~~~l~~-----------~~~~~l~av~d~------~~~~~~~~a~~~g~~--~-----~~ 79 (350)
T 3rc1_A 26 NPIRVGVIGCADI--AWRRALPALEA-----------EPLTEVTAIASR------RWDRAKRFTERFGGE--P-----VE 79 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHH-----------CTTEEEEEEEES------SHHHHHHHHHHHCSE--E-----EE
T ss_pred CceEEEEEcCcHH--HHHHHHHHHHh-----------CCCeEEEEEEcC------CHHHHHHHHHHcCCC--C-----cC
Confidence 4577888874111 21224444432 268888755443 345667777777652 1 15
Q ss_pred ChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 349 TVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 349 ~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 80 ~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 80 GYPALLERDDVDAVYVPLP--AVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp SHHHHHTCTTCSEEEECCC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCcEEEeC
Confidence 7778886 4899888775 3333445678999999998754
No 230
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=59.78 E-value=47 Score=24.07 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~P 384 (474)
+++|+.+.+ .....+.......|. .+......++....+. ..|++++--.- .+.-|..+++.+. ..+|
T Consensus 2 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 74 (121)
T 2pl1_A 2 RVLVVEDNA----LLRHHLKVQIQDAGH--QVDDAEDAKEADYYLNEHIPDIAIVDLGL-PDEDGLSLIRRWRSNDVSLP 74 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHTTCCSC
T ss_pred eEEEEeCcH----HHHHHHHHHHhhcCC--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 345555543 345566666666553 3443333333333333 35777764321 3344666776664 3567
Q ss_pred EEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|.. ..+.. .+.+..|..+++..|-+ .+++..++..++.
T Consensus 75 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 75 ILVLTARESWQDKVEVLSAGADDYVTKPFH--IEEVMARMQALMR 117 (121)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHcCccceEECCCC--HHHHHHHHHHHHH
Confidence 7654 33322 23344577899999988 9999999987753
No 231
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=59.69 E-value=43 Score=31.65 Aligned_cols=71 Identities=8% Similarity=-0.042 Sum_probs=48.7
Q ss_pred CcEEEEE-EcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc-------CCEEEEcCCCCCCCCchHHHHH
Q 011954 307 PSMHAVV-VGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS-------IDVLVQNSQARGECFGRITIEA 378 (474)
Q Consensus 307 ~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~-------adv~v~ps~~~~E~~~~~~~EA 378 (474)
++++++- +-+. ..+..++.+++++++.. ....++.+++.. .|+++..+. ...-.-.+.+|
T Consensus 63 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~I~tp--~~~H~~~~~~a 130 (417)
T 3v5n_A 63 DHYELVAGALSS------TPEKAEASGRELGLDPS----RVYSDFKEMAIREAKLKNGIEAVAIVTP--NHVHYAAAKEF 130 (417)
T ss_dssp SCEEEEEEECCS------SHHHHHHHHHHHTCCGG----GBCSCHHHHHHHHHHCTTCCSEEEECSC--TTSHHHHHHHH
T ss_pred CCcEEEEEEeCC------CHHHHHHHHHHcCCCcc----cccCCHHHHHhcccccCCCCcEEEECCC--cHHHHHHHHHH
Confidence 5677763 4443 35667788888876421 123678888876 899988776 33334467789
Q ss_pred HhcCCCEEEcC
Q 011954 379 MAFQLPVLGTA 389 (474)
Q Consensus 379 ma~G~PvI~s~ 389 (474)
+..|++|++-.
T Consensus 131 l~aGkhVl~EK 141 (417)
T 3v5n_A 131 LKRGIHVICDK 141 (417)
T ss_dssp HTTTCEEEEES
T ss_pred HhCCCeEEEEC
Confidence 99999999864
No 232
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=59.64 E-value=48 Score=24.14 Aligned_cols=108 Identities=9% Similarity=0.110 Sum_probs=62.6
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--cCCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--FQLP 384 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~G~P 384 (474)
.+++|+.+.+ .....++...+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...|
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (123)
T 1xhf_A 4 PHILIVEDEL----VTRNTLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINL-PGKNGLLLARELREQANVA 76 (123)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHHCCCE
T ss_pred ceEEEEeCCH----HHHHHHHHHHhhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHhCCCCc
Confidence 3566777653 345566666666554 3444333333333333 36887764331 2334555665553 4677
Q ss_pred EEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|.. ..... .+.+..|..+++..|-+ .+++..++..++.
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 77 LMFLTGRDNEVDKILGLEIGADDYITKPFN--PRELTIRARNLLS 119 (123)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 7654 33322 22345577899999988 9999999987653
No 233
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=59.14 E-value=93 Score=27.27 Aligned_cols=221 Identities=12% Similarity=0.041 Sum_probs=107.4
Q ss_pred ccccccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhh
Q 011954 69 LNFMKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINT 147 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (474)
++..+..+|.++.+.....--. ..+..+.+++.+.|+++.++....+.... ........
T Consensus 8 L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--------------------~~~~~~l~ 67 (301)
T 3miz_A 8 IRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSERE--------------------VEIWKMFQ 67 (301)
T ss_dssp ----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHH--------------------HHHHHHHH
T ss_pred HhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH--------------------HHHHHHHH
Confidence 4444567899999875433334 67778888899999999988754321000 00112233
Q ss_pred hcCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcC
Q 011954 148 ALNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGI 227 (474)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (474)
..++|-|++........+. .+.....|+|..-...... .....+..+.........+.+.+ .
T Consensus 68 ~~~vdGiIi~~~~~~~~~~-----~~~~~~iPvV~~~~~~~~~----------~~~~~V~~D~~~~g~~a~~~L~~-~-- 129 (301)
T 3miz_A 68 SHRIDGVLYVTMYRRIVDP-----ESGDVSIPTVMINCRPQTR----------ELLPSIEPDDYQGARDLTRYLLE-R-- 129 (301)
T ss_dssp HTTCSEEEEEEEEEEECCC-----CCTTCCCCEEEEEEECSST----------TSSCEEEECHHHHHHHHHHHHHT-T--
T ss_pred hCCCCEEEEecCCccHHHH-----HHHhCCCCEEEECCCCCCC----------CCCCEEeeChHHHHHHHHHHHHH-c--
Confidence 4678877765432211111 1112234555433322110 01122222222223333333332 2
Q ss_pred CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEec---ccccCcchHHHHHHHHHHHHHHHHhcc
Q 011954 228 RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIIN---SVSRGKGQDLFLHSFYESLQLIREKKL 304 (474)
Q Consensus 228 ~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vg---rl~~~Kg~~~ll~a~~~l~~~~~~~~~ 304 (474)
...++-++....+...... +...-.+.-++.|++.+...+ +.+ ......+. +.+++.++.+
T Consensus 130 G~~~I~~i~~~~~~~~~~~------R~~Gf~~al~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~l~------- 193 (301)
T 3miz_A 130 GHRRIGYIRLNPILLGAEL------RLDAFRRTTSEFGLTENDLSI-SLGMDGPVGAENNY--VFAAATEMLK------- 193 (301)
T ss_dssp TCCSEEEEECCTTSHHHHH------HHHHHHHHHHHHTCCGGGEEE-EECEESSTTSCEEC--HHHHHHHHHT-------
T ss_pred CCCeEEEEecCccchhHHH------HHHHHHHHHHHcCCCCCcceE-EEcCCCCcCccccH--HHHHHHHHHc-------
Confidence 3456777764332211100 000011223445665444333 455 56666665 1133333333
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCCC
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKTL 348 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~ 348 (474)
.+++...+++.++. ....+.+.+++.|+. +.|.+.|+..
T Consensus 194 ~~~~~~ai~~~~d~-----~A~g~~~al~~~g~~vP~di~vig~D~ 234 (301)
T 3miz_A 194 QDDRPTAIMSGNDE-----MAIQIYIAAMALGLRIPQDVSIVGFDD 234 (301)
T ss_dssp STTCCSEEEESSHH-----HHHHHHHHHHTTTCCHHHHCEEECSBC
T ss_pred CCCCCcEEEECCHH-----HHHHHHHHHHHcCCCCCCCeeEEEeCC
Confidence 34667778887752 455677778888885 7899999863
No 234
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=59.13 E-value=21 Score=28.93 Aligned_cols=110 Identities=12% Similarity=0.139 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHh---cC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMA---FQ 382 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma---~G 382 (474)
..+++|+.+.+ .....+.......|. .|......++..+.+.. .|++++-..- .+.-|+.+++.+. ..
T Consensus 7 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~ 79 (184)
T 3rqi_A 7 DKNFLVIDDNE----VFAGTLARGLERRGY--AVRQAHNKDEALKLAGAEKFEFITVXLHL-GNDSGLSLIAPLCDLQPD 79 (184)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHTTSCCSEEEECSEE-TTEESHHHHHHHHHHCTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhhCCCCEEEEeccC-CCccHHHHHHHHHhcCCC
Confidence 45677777654 356667777776654 44444443343344332 5777763321 3445666766554 36
Q ss_pred CCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 383 LPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 383 ~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+|||.- .... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 80 ARILVLTGYASIATAVQAVKDGADNYLAKPAN--VESILAALQTNASE 125 (184)
T ss_dssp CEEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHTSTTHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHHH
Confidence 777654 3332 233455678899999988 99999999887753
No 235
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=58.82 E-value=30 Score=31.60 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=31.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
..+||+++... .+++..++.++...|.+|.++++..-..
T Consensus 178 ~glkva~vGD~------~nva~Sl~~~~~~~G~~v~~~~P~~~~~ 216 (340)
T 4ep1_A 178 KGIKLAYVGDG------NNVCHSLLLASAKVGMHMTVATPVGYRP 216 (340)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHHTCEEEEECCTTCCC
T ss_pred CCCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCcccCC
Confidence 46799999652 4789999999999999999999865443
No 236
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=58.79 E-value=14 Score=30.88 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=29.2
Q ss_pred ccCEEEEEecCCCCCChh-H-HHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGP-L-LLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~-~-~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
+++||++-.. |+.. . ...++.+.|.+.|++|+++......
T Consensus 6 ~~k~I~lgiT----Gs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~ 47 (201)
T 3lqk_A 6 AGKHVGFGLT----GSHCTYHEVLPQMERLVELGAKVTPFVTHTVQ 47 (201)
T ss_dssp TTCEEEEECC----SCGGGGGGTHHHHHHHHHTTCEEEEECSSCSC
T ss_pred CCCEEEEEEE----ChHHHHHHHHHHHHHHhhCCCEEEEEEChhHH
Confidence 3577877665 2333 3 5899999999999999999865443
No 237
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=58.59 E-value=16 Score=33.30 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=42.3
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+.. .+..++.+++++... ...++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~~~av~d~~------~~~~~~~a~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 93 (329)
T 3evn_A 28 GNGEVVAVSSRT------LESAQAFANKYHLPK------AYDKLEDMLADESIDVIYVATI--NQDHYKVAKAALLAGKH 93 (329)
T ss_dssp CSEEEEEEECSC------SSTTCC---CCCCSC------EESCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCC------HHHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCe
Confidence 677777554432 122334455555421 1357888887 7899988775 33334456789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 94 Vl~EK 98 (329)
T 3evn_A 94 VLVEK 98 (329)
T ss_dssp EEEES
T ss_pred EEEcc
Confidence 99864
No 238
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=58.45 E-value=43 Score=28.95 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=48.0
Q ss_pred EEEEEcC-CCCcCchHHHHHHHHHHHc-CCCCeEEEecCCCChHHHHh-cCCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 310 HAVVVGS-DMNAQTKFETELRNFVAEK-KIQDHVHFVNKTLTVSPYLA-SIDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 310 ~l~i~G~-g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~~~~~~~-~adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
++.|+|. |. ....+.+.+.+. +. .-+-.....+++.+++. .+|++|--+. .+..--.+..+...|+|+|
T Consensus 2 kV~V~Ga~G~-----mG~~i~~~~~~~~~~-elva~~d~~~dl~~~~~~~~DvvIDfT~--p~a~~~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 2 RVGVLGAKGK-----VGTTMVRAVAAADDL-TLSAELDAGDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLIDNGIHAV 73 (245)
T ss_dssp EEEEETTTSH-----HHHHHHHHHHHCTTC-EEEEEECTTCCTHHHHHTTCCEEEECSC--TTTHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCH-----HHHHHHHHHHhCCCC-EEEEEEccCCCHHHHhccCCcEEEEccC--hHHHHHHHHHHHHcCCCEE
Confidence 5778884 63 666676666544 22 11222223366777765 7999995555 5554444556789999999
Q ss_pred EcCCCCcce
Q 011954 387 GTAAGGTME 395 (474)
Q Consensus 387 ~s~~~g~~e 395 (474)
....|-..|
T Consensus 74 igTTG~~~e 82 (245)
T 1p9l_A 74 VGTTGFTAE 82 (245)
T ss_dssp ECCCCCCHH
T ss_pred EcCCCCCHH
Confidence 876654333
No 239
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=58.20 E-value=28 Score=31.77 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=59.6
Q ss_pred CCCEEEEEeccc-ccCcchHHHHHHHHHHHHHHHHhccCC-CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec
Q 011954 268 DDDLLFAIINSV-SRGKGQDLFLHSFYESLQLIREKKLQV-PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN 345 (474)
Q Consensus 268 ~~~~~i~~vgrl-~~~Kg~~~ll~a~~~l~~~~~~~~~~~-~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (474)
.+++.++.+|-= .-. ...+.++. +. ++++++-+-+. ..+..++.+++++.. .
T Consensus 16 ~~~irvgiIG~G~~~g---~~~~~~l~-----------~~~~~~~lvav~d~------~~~~~~~~a~~~~~~-~----- 69 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAAR---ELHLPALK-----------NLSHLFEITAVTSR------TRSHAEEFAKMVGNP-A----- 69 (340)
T ss_dssp CCCEEEEEECCSHHHH---HTHHHHHH-----------TTTTTEEEEEEECS------SHHHHHHHHHHHSSC-E-----
T ss_pred CCceeEEEEecCHHHH---HHHHHHHH-----------hCCCceEEEEEEcC------CHHHHHHHHHHhCCC-c-----
Confidence 566888888842 111 12334443 22 67888755554 356677778887742 1
Q ss_pred CCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 346 KTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 346 ~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
...++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 70 ~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 70 VFDSYEELLESGLVDAVDLTLP--VELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp EESCHHHHHHSSCCSEEEECCC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred ccCCHHHHhcCCCCCEEEEeCC--chHHHHHHHHHHHCCCcEEEeC
Confidence 1357888886 4799988775 3333445678999999998864
No 240
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=58.08 E-value=15 Score=27.97 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=24.1
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+.+++|+++.... .....+...|.+.|++|..+.
T Consensus 4 ~~~~~iLivdd~~------~~~~~l~~~l~~~g~~v~~~~ 37 (140)
T 3grc_A 4 APRPRILICEDDP------DIARLLNLMLEKGGFDSDMVH 37 (140)
T ss_dssp -CCSEEEEECSCH------HHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCEEEEcCCH------HHHHHHHHHHHHCCCeEEEEC
Confidence 3457899998643 456677788888999976554
No 241
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=58.08 E-value=33 Score=31.52 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=31.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
.+||+++... .+++..++.++...|.+|.++++..-..
T Consensus 153 glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~p 190 (355)
T 4a8p_A 153 DCKVVFVGDA------TQVCFSLGLITTKMGMNFVHFGPEGFQL 190 (355)
T ss_dssp GCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTSSC
T ss_pred CCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCCccCC
Confidence 6789998762 4899999999999999999999865443
No 242
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=58.03 E-value=73 Score=27.37 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=40.5
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHh---cCCCEEEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 357 IDVLVQNSQARGECFGRITIEAMA---FQLPVLGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma---~G~PvI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.|++++=-.- .+.-|..+++.+. ..+|||+-. .... .+.+..|..+++..|-+ .++|.++|..++.
T Consensus 174 ~dlvl~D~~m-p~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~--~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 174 IDIVLSDVNM-PNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT--LDVIKQTLTLYAE 246 (254)
T ss_dssp CSEEEEEESS-CSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEcCCC-CCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCC--HHHHHHHHHHHHH
Confidence 4666652210 2234555555443 468887643 2221 23344577899999988 9999999988864
No 243
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=57.95 E-value=15 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=24.5
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
++.++|+++.... .....+...|.+.|++|...
T Consensus 5 ~~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 37 (130)
T 3eod_A 5 LVGKQILIVEDEQ------VFRSLLDSWFSSLGATTVLA 37 (130)
T ss_dssp TTTCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEeCCH------HHHHHHHHHHHhCCceEEEe
Confidence 3467899998643 45667778888899998764
No 244
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=57.94 E-value=41 Score=31.71 Aligned_cols=83 Identities=16% Similarity=0.047 Sum_probs=48.4
Q ss_pred cCEEEEEecC-CCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCC
Q 011954 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNAD 152 (474)
Q Consensus 74 ~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (474)
.+||+++... ...|-+.+++..++.++...|.+|.++++..-....+............|..+......... -.+.|
T Consensus 188 Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~ea--v~~AD 265 (418)
T 2yfk_A 188 GKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEA--FKDAD 265 (418)
T ss_dssp TCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHH--HTTCS
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHH--hcCCC
Confidence 6789999642 22343358999999999999999999998653322222211111222334333222222222 25789
Q ss_pred EEEEcc
Q 011954 153 LVVLNT 158 (474)
Q Consensus 153 iV~~~~ 158 (474)
+|+...
T Consensus 266 VVytd~ 271 (418)
T 2yfk_A 266 VVYPKS 271 (418)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998864
No 245
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=57.92 E-value=25 Score=29.43 Aligned_cols=106 Identities=9% Similarity=0.004 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh---cCCCEE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMA---FQLPVL 386 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma---~G~PvI 386 (474)
+++|+.+.+ .....+.......+ .|......++....+...|++++-..- .+.-|..+++.+. ..+|+|
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~---~v~~~~~~~~al~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 4 KIAVVDDDK----NILKKVSEKLQQLG---RVKTFLTGEDFLNDEEAFHVVVLDVML-PDYSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEECSCH----HHHHHHHHHHTTTE---EEEEESSHHHHHHCCSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEEE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhCC---CEEEECCHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCcEE
Confidence 566676653 34555666655543 344333322322223567888764321 3344666666554 467776
Q ss_pred Ec-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 387 GT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 387 ~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.- .... ..+.+..|..|++..|-+ .++|..+|..++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFEAGADDYVTKPFN--PEILLARVKRFLE 116 (220)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 54 3222 123344577899999988 9999999988864
No 246
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=57.79 E-value=12 Score=31.87 Aligned_cols=41 Identities=22% Similarity=0.110 Sum_probs=28.4
Q ss_pred ccCEEEEEecCCCC----CChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSL----SGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~----gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.|||||+|...... ++.. ..+..+++.+.+.|++|.++...
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 36789999866543 3333 44556677778899999998754
No 247
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=57.75 E-value=16 Score=31.12 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=30.4
Q ss_pred ccCEEEEEecCCC---CCChh-HHHHHHHHHHHhc--Cc-EEEEEeCCC
Q 011954 73 KSKLVLLVSHELS---LSGGP-LLLMELAFLLRGV--GA-EVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~---~gG~~-~~~~~l~~~L~~~--G~-~V~v~~~~~ 114 (474)
.|||||+|..... .++.. ..+..+++.+.+. |+ +|.++-...
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~ 51 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYD 51 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTT
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcC
Confidence 4689999998765 45554 4566677788775 68 999988543
No 248
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=57.68 E-value=10 Score=31.19 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=26.9
Q ss_pred cCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++||++... ||. .....++++.|.+.|++|+++....
T Consensus 2 ~k~IllgvT----Gs~aa~k~~~l~~~L~~~g~~V~vv~T~~ 39 (181)
T 1g63_A 2 YGKLLICAT----ASINVININHYIVELKQHFDEVNILFSPS 39 (181)
T ss_dssp CCCEEEEEC----SCGGGGGHHHHHHHHTTTSSCEEEEECGG
T ss_pred CCEEEEEEE----CHHHHHHHHHHHHHHHHCCCEEEEEEchh
Confidence 456766664 232 2467899999999999999988654
No 249
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=57.64 E-value=38 Score=31.60 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.+++++.. ...++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~a~~~g~~-------~~~~~~ell~~~~vD~V~i~tp--~~~H~~~~~~al~aGk~ 90 (387)
T 3moi_A 26 PDAQIVAACDP------NEDVRERFGKEYGIP-------VFATLAEMMQHVQMDAVYIASP--HQFHCEHVVQASEQGLH 90 (387)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCC-------EESSHHHHHHHSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC-------eECCHHHHHcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCc
Confidence 77888766554 345566777777653 12577888875 899998876 33334467789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 91 Vl~EK 95 (387)
T 3moi_A 91 IIVEK 95 (387)
T ss_dssp EEECS
T ss_pred eeeeC
Confidence 99764
No 250
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=57.60 E-value=34 Score=31.22 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=31.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
.+||+++... .+++..++.++...|.+|.++++..-.
T Consensus 175 glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~ 211 (339)
T 4a8t_A 175 DCKVVFVGDA------TQVCFSLGLITTKMGMNFVHFGPEGFQ 211 (339)
T ss_dssp GCEEEEESSC------CHHHHHHHHHHHHTTCEEEEECCTTSS
T ss_pred CCEEEEECCC------chhHHHHHHHHHHcCCEEEEECCcccC
Confidence 6789998762 489999999999999999999976544
No 251
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=57.43 E-value=20 Score=32.83 Aligned_cols=46 Identities=17% Similarity=0.007 Sum_probs=32.3
Q ss_pred ccccccCEEEEEecCCCCCC-hhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 69 LNFMKSKLVLLVSHELSLSG-GPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
...|||+|++++.+....+| +.+....+...|.+.|+++.+.....
T Consensus 19 ~~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~ 65 (337)
T 2qv7_A 19 GSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEK 65 (337)
T ss_dssp CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS
T ss_pred ccccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 34455677888776444333 34677889999999999999886543
No 252
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=57.20 E-value=14 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=24.4
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
++++|+++.... .....+...|.+.|++|....
T Consensus 3 ~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 35 (142)
T 2qxy_A 3 LTPTVMVVDESR------ITFLAVKNALEKDGFNVIWAK 35 (142)
T ss_dssp CCCEEEEECSCH------HHHHHHHHHHGGGTCEEEEES
T ss_pred CCCeEEEEeCCH------HHHHHHHHHHHhCCCEEEEEC
Confidence 467899998642 456677788888999987543
No 253
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=57.17 E-value=99 Score=27.00 Aligned_cols=42 Identities=7% Similarity=-0.098 Sum_probs=28.5
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+..+|.++.+.....--......+.+++.+.|+++.++....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~ 45 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG 45 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 356799998865332223556666777788899999988654
No 254
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=57.16 E-value=3.5 Score=31.57 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=21.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV 108 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~ 108 (474)
++|||+|-.+.. ....+...|.+.||+|.
T Consensus 8 ~~rILiVdD~~~------~~~~l~~~L~~~G~~v~ 36 (123)
T 2lpm_A 8 RLRVLVVEDESM------IAMLIEDTLCELGHEVA 36 (123)
T ss_dssp CCCEEEESSSTT------TSHHHHHHHHHHCCCCC
T ss_pred CCEEEEEeCCHH------HHHHHHHHHHHCCCEEE
Confidence 578999998653 34455667788899974
No 255
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=56.90 E-value=58 Score=24.24 Aligned_cols=111 Identities=9% Similarity=0.109 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQL 383 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~ 383 (474)
.+++|+.+.+ .....++...+..+....+.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~l-p~~~g~~~~~~l~~~~~~~ 78 (133)
T 3b2n_A 4 TSLIIAEDQN----MLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM-PGMTGLEVLAEIRKKHLNI 78 (133)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTCSC
T ss_pred eEEEEECCCH----HHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHHHCCCC
Confidence 4566666643 345566666665531112222222223333332 36887764331 2334566666654 356
Q ss_pred CEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 384 PVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 384 PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
|+|.- .... ..+.+..|..|++..|-+ .++|.++|..++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERS--IEELVETINKVNNG 123 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHcC
Confidence 77653 3332 233445577899999988 99999999888753
No 256
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=56.89 E-value=39 Score=30.55 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH-hcCCEEEEcCCCCCCCCchHHHHHHhcCCCE
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL-ASIDVLVQNSQARGECFGRITIEAMAFQLPV 385 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~-~~adv~v~ps~~~~E~~~~~~~EAma~G~Pv 385 (474)
++++++-+-+. ..+..++++++++.. .. ..++.+++ ..+|+++..+. ...-.-.+.+|+..|++|
T Consensus 24 ~~~~~~~v~d~------~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~gk~V 89 (325)
T 2ho3_A 24 GEYQLVAIYSR------KLETAATFASRYQNI---QL---FDQLEVFFKSSFDLVYIASP--NSLHFAQAKAALSAGKHV 89 (325)
T ss_dssp TSEEEEEEECS------SHHHHHHHGGGSSSC---EE---ESCHHHHHTSSCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC---eE---eCCHHHHhCCCCCEEEEeCC--hHHHHHHHHHHHHcCCcE
Confidence 67887755443 245556666766531 11 24677777 67899998876 444445667899999999
Q ss_pred EEcC
Q 011954 386 LGTA 389 (474)
Q Consensus 386 I~s~ 389 (474)
++-.
T Consensus 90 ~~EK 93 (325)
T 2ho3_A 90 ILEK 93 (325)
T ss_dssp EEES
T ss_pred EEec
Confidence 9864
No 257
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=56.67 E-value=17 Score=29.10 Aligned_cols=86 Identities=6% Similarity=-0.071 Sum_probs=38.8
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHH-hcCc-EEEEEeCCCCCC--chhhhhhcccchhccceeeeehhcHHHHh
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGA-EVVWITNQKPNE--PDEVIYSLEHKMLDRGVQVLSAKGEKAIN 146 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~-~~G~-~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (474)
+|.|+|||||+..- . .-......+.+.+. +.|. ++.+.+...... ...........+...|+.+.... .+.+.
T Consensus 3 ~~~m~~vLFVC~gN-~-cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~~-ar~l~ 79 (158)
T 3rof_A 3 FQGMVDVAFVCLGN-I-CRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMI-SELFE 79 (158)
T ss_dssp CCSCEEEEEEESSS-S-SHHHHHHHHHHHHHHHTTCCSEEEEEEETTCCSTTCCCCHHHHHHHHHTTCCCTTCC-CCBCC
T ss_pred CCCCCEEEEEeCCc-h-hHHHHHHHHHHHHHHHcCCCCeEEEecccCCcccCCCCCHHHHHHHHHcCCCcCCCc-ceECC
Confidence 45678999999721 1 11234555555553 3443 255555221110 00111112233445566553211 11111
Q ss_pred hhcCCCEEEEccc
Q 011954 147 TALNADLVVLNTA 159 (474)
Q Consensus 147 ~~~~~DiV~~~~~ 159 (474)
....+|+|++-+.
T Consensus 80 ~~~~~DlIi~Md~ 92 (158)
T 3rof_A 80 ATDDFDYIVAMDQ 92 (158)
T ss_dssp TTCCCSEEEESSH
T ss_pred hhhcCCEEEEcCH
Confidence 1118999998753
No 258
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=56.49 E-value=28 Score=33.20 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=59.8
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCC-eEEEecC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQD-HVHFVNK 346 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~-~v~~~g~ 346 (474)
.+...|+++|-= .=|...+++++. +.++++++-+-+. ..+..++.+++++... .+..
T Consensus 81 ~~~irigiIG~G--~~g~~~~~~~l~-----------~~~~~~lvav~d~------~~~~~~~~a~~~g~~~~~~~~--- 138 (433)
T 1h6d_A 81 DRRFGYAIVGLG--KYALNQILPGFA-----------GCQHSRIEALVSG------NAEKAKIVAAEYGVDPRKIYD--- 138 (433)
T ss_dssp CCCEEEEEECCS--HHHHHTHHHHTT-----------TCSSEEEEEEECS------CHHHHHHHHHHTTCCGGGEEC---
T ss_pred CCceEEEEECCc--HHHHHHHHHHHh-----------hCCCcEEEEEEcC------CHHHHHHHHHHhCCCcccccc---
Confidence 345778888741 112112444443 2367888755554 3455677778877642 1221
Q ss_pred CCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 347 TLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 347 ~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
..++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 139 ~~~~~~ll~~~~vD~V~iatp--~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 139 YSNFDKIAKDPKIDAVYIILP--NSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp SSSGGGGGGCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred cCCHHHHhcCCCCCEEEEcCC--chhHHHHHHHHHHCCCcEEEcC
Confidence 245667776 6899998876 4444456778999999999864
No 259
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=56.20 E-value=10 Score=30.42 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=25.5
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|++|||.+-+... | -..-..+.+.|.++||+|.=+...
T Consensus 1 m~~MkIaigsDha---G-~~lK~~i~~~L~~~G~eV~D~G~~ 38 (162)
T 2vvp_A 1 MSGMRVYLGADHA---G-YELKQRIIEHLKQTGHEPIDCGAL 38 (162)
T ss_dssp --CCEEEEEECHH---H-HHHHHHHHHHHHHTTCEEEECSCC
T ss_pred CCCCEEEEEeCch---h-HHHHHHHHHHHHHCCCEEEEeCCC
Confidence 4568998877532 2 234556788999999999877643
No 260
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=56.19 E-value=54 Score=23.63 Aligned_cols=107 Identities=9% Similarity=0.063 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHh--cCCCE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMA--FQLPV 385 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma--~G~Pv 385 (474)
+++|+.+.+ .....++......|. .+.......+....+ ...|++++-..- .+.-|..+++.+. ...|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (120)
T 2a9o_A 3 KILIVDDEK----PISDIIKFNMTKEGY--EVVTAFNGREALEQFEAEQPDIIILDLML-PEIDGLEVAKTIRKTSSVPI 75 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHCCCCE
T ss_pred eEEEEcCCH----HHHHHHHHHHHhcCc--EEEEecCHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHhCCCCCE
Confidence 355665543 345556666665553 344333322322322 246777764331 3334555665543 56787
Q ss_pred EEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 386 LGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 386 I~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|... .... .+.+..|..+++..|-+ .+++.+++..++.
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 76 LMLSAKDSEFDKVIGLELGADDYVTKPFS--NRELQARVKALLR 117 (120)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEecCCchHHHHHHHhCCHhheEeCCCC--HHHHHHHHHHHHc
Confidence 6543 2221 22334577899999988 9999999988764
No 261
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=56.12 E-value=36 Score=30.86 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=31.8
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
..+||+++... .+++..++.++...|.+|.++++..-..
T Consensus 156 ~glkva~vGD~------~rva~Sl~~~~~~~G~~v~~~~P~~~~~ 194 (323)
T 3gd5_A 156 AGLKLAYVGDG------NNVAHSLLLGCAKVGMSIAVATPEGFTP 194 (323)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHHTCEEEEECCTTCCC
T ss_pred CCCEEEEECCC------CcHHHHHHHHHHHcCCEEEEECCCcccC
Confidence 36789998752 4889999999999999999999765443
No 262
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=56.07 E-value=43 Score=31.37 Aligned_cols=71 Identities=11% Similarity=-0.015 Sum_probs=48.2
Q ss_pred CcEEEEE-EcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc-------CCEEEEcCCCCCCCCchHHHHH
Q 011954 307 PSMHAVV-VGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS-------IDVLVQNSQARGECFGRITIEA 378 (474)
Q Consensus 307 ~~~~l~i-~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~-------adv~v~ps~~~~E~~~~~~~EA 378 (474)
++++++- +-+. ..+..++.+++++++.. ....++.+++.. .|+++..+. ...-.-.+.+|
T Consensus 38 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~i~tp--~~~H~~~~~~a 105 (398)
T 3dty_A 38 NTFVLVAGAFDI------DPIRGSAFGEQLGVDSE----RCYADYLSMFEQEARRADGIQAVSIATP--NGTHYSITKAA 105 (398)
T ss_dssp GSEEEEEEECCS------SHHHHHHHHHHTTCCGG----GBCSSHHHHHHHHTTCTTCCSEEEEESC--GGGHHHHHHHH
T ss_pred CCeEEEEEEeCC------CHHHHHHHHHHhCCCcc----eeeCCHHHHHhcccccCCCCCEEEECCC--cHHHHHHHHHH
Confidence 5677764 4443 35667788888886421 123678888875 899888775 33334467799
Q ss_pred HhcCCCEEEcC
Q 011954 379 MAFQLPVLGTA 389 (474)
Q Consensus 379 ma~G~PvI~s~ 389 (474)
+..|++|++-.
T Consensus 106 l~aGkhVl~EK 116 (398)
T 3dty_A 106 LEAGLHVVCEK 116 (398)
T ss_dssp HHTTCEEEECS
T ss_pred HHCCCeEEEeC
Confidence 99999999853
No 263
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=55.98 E-value=43 Score=31.96 Aligned_cols=75 Identities=15% Similarity=-0.011 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHH---HcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVA---EKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~---~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~ 381 (474)
++++++-+-+. ..+..++.++ +++++..-.+.+..+++.++++ ..|+++..+. ...-.-.+++||..
T Consensus 43 ~~~~lvav~d~------~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp--~~~h~~~~~~al~a 114 (444)
T 2ixa_A 43 DDVEIVAFADP------DPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP--WEWHHEHGVAAMKA 114 (444)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC--GGGHHHHHHHHHHT
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHC
Confidence 78888755553 2333444443 4555322233333347888887 4888888775 33334466789999
Q ss_pred CCCEEEcC
Q 011954 382 QLPVLGTA 389 (474)
Q Consensus 382 G~PvI~s~ 389 (474)
|++|++-.
T Consensus 115 GkhV~~EK 122 (444)
T 2ixa_A 115 GKIVGMEV 122 (444)
T ss_dssp TCEEEECC
T ss_pred CCeEEEeC
Confidence 99999854
No 264
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=55.90 E-value=13 Score=29.04 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=26.8
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|||+++.. ...|..+.++..+++.|.+.|++|.++.
T Consensus 2 ~ki~I~Y~-S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISG-STLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECC-TTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEE-CCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 56776642 2236667899999999999999988763
No 265
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=55.64 E-value=17 Score=27.65 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=23.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
|++++||++.... .....+...|.+.|++|...
T Consensus 2 m~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~ 34 (136)
T 3t6k_A 2 MKPHTLLIVDDDD------TVAEMLELVLRGAGYEVRRA 34 (136)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEeCCH------HHHHHHHHHHHHCCCEEEEe
Confidence 5567899998643 45666777888899988754
No 266
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=55.23 E-value=29 Score=26.75 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=22.3
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+.+|||+|-.+. .....+...|.+.|++++..+
T Consensus 11 k~~rILiVDD~~------~~r~~l~~~L~~~G~~~v~~a 43 (134)
T 3to5_A 11 KNMKILIVDDFS------TMRRIVKNLLRDLGFNNTQEA 43 (134)
T ss_dssp TTCCEEEECSCH------HHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEEeCCH------HHHHHHHHHHHHcCCcEEEEE
Confidence 357899998743 345556677888998754433
No 267
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=55.19 E-value=25 Score=32.59 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCE
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPV 385 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~Pv 385 (474)
+.+++-+.+. ..+..++.+++++... + ..++.++++. .|+++..+. ...-.-.+++|+.+|++|
T Consensus 37 ~~~l~av~d~------~~~~a~~~a~~~g~~~-~-----~~d~~~ll~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhV 102 (390)
T 4h3v_A 37 HPDLNVLCGR------DAEAVRAAAGKLGWST-T-----ETDWRTLLERDDVQLVDVCTP--GDSHAEIAIAALEAGKHV 102 (390)
T ss_dssp EEEEEEEECS------SHHHHHHHHHHHTCSE-E-----ESCHHHHTTCTTCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CceEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCCc
Confidence 4567766654 4677788888888641 1 2567788764 688888775 333444678899999999
Q ss_pred EEcC
Q 011954 386 LGTA 389 (474)
Q Consensus 386 I~s~ 389 (474)
++-.
T Consensus 103 l~EK 106 (390)
T 4h3v_A 103 LCEK 106 (390)
T ss_dssp EEES
T ss_pred eeec
Confidence 8865
No 268
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=54.98 E-value=17 Score=27.36 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=22.5
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
|++++|+++.... .....+...|.+.|++|...
T Consensus 1 m~~~~Ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 33 (132)
T 3crn_A 1 MSLKRILIVDDDT------AILDSTKQILEFEGYEVEIA 33 (132)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCccEEEEEeCCH------HHHHHHHHHHHHCCceEEEe
Confidence 4567899988643 45566777788889988743
No 269
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=54.91 E-value=47 Score=28.31 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=53.3
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHH----HHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH-
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFV----AEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM- 379 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~----~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm- 379 (474)
..+++.+.++|+|+.=+++..++..... +++ .-|++|+-|-...-+.|...=|.+
T Consensus 29 dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~--------------------~pDfvI~isPN~a~PGP~~ARE~l~ 88 (283)
T 1qv9_A 29 DREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDF--------------------EPDFIVYGGPNPAAPGPSKAREMLA 88 (283)
T ss_dssp CCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--------------------CCSEEEEECSCTTSHHHHHHHHHHH
T ss_pred ccCCceEEEeccCCCCCHHHHHHHHHHhhhhhhhc--------------------CCCEEEEECCCCCCCCchHHHHHHH
Confidence 3479999999999865554444433332 333 246666655421233445566776
Q ss_pred hcCCCEEE-cCCCCc--ceeeeeCCceeeecCCC
Q 011954 380 AFQLPVLG-TAAGGT--MEIVVNGTTGLLHPTGK 410 (474)
Q Consensus 380 a~G~PvI~-s~~~g~--~e~v~~~~~G~l~~~~d 410 (474)
+.|+|+|. +|.++. .+-+++...|++.-..|
T Consensus 89 ~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 89 DSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp TSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTS
T ss_pred hCCCCEEEEcCCcchhhHHHHHhcCCcEEEEecC
Confidence 68999865 666665 44555667888887665
No 270
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=54.89 E-value=56 Score=23.43 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~P 384 (474)
+++|+.+.+ .....++....+.|. .+......++....+. ..|++++-..- .+.-|..+++.+. ...|
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (116)
T 3a10_A 3 RILVVDDEP----NIRELLKEELQEEGY--EIDTAENGEEALKKFFSGNYDLVILDIEM-PGISGLEVAGEIRKKKKDAK 75 (116)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHccCCCCe
Confidence 456666643 355666666666554 4544443333333333 35777764331 2334566666553 4577
Q ss_pred EEE-cCCCCc-ceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 385 VLG-TAAGGT-MEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 385 vI~-s~~~g~-~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
+|. |..+.. .+....|..+++..|-+ .+++..++..++
T Consensus 76 ii~~s~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~ 115 (116)
T 3a10_A 76 IILLTAYSHYRSDMSSWAADEYVVKSFN--FDELKEKVKKLL 115 (116)
T ss_dssp EEEEESCGGGGGCGGGGGSSEEEECCSS--THHHHHHHHHHT
T ss_pred EEEEECCcchHHHHHhccccceEECCCC--HHHHHHHHHHHh
Confidence 764 332221 33344567899999988 899999987764
No 271
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=54.87 E-value=33 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.032 Sum_probs=24.6
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+|+||+.. |....=..+++.|.+.|++|.++....
T Consensus 14 ~~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 48 (335)
T 1rpn_A 14 TRSALVTG------ITGQDGAYLAKLLLEKGYRVHGLVARR 48 (335)
T ss_dssp -CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEC------CCChHHHHHHHHHHHCCCeEEEEeCCC
Confidence 67787664 333455677888888999999988543
No 272
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=54.75 E-value=52 Score=29.84 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCE
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPV 385 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~Pv 385 (474)
+++++-+-+. ..+..++++++++.+. + ..++.+++. ..|+++..+. ...-.-.+.+|+..|++|
T Consensus 28 ~~~l~av~d~------~~~~a~~~a~~~~~~~-~-----~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~~GkhV 93 (334)
T 3ohs_X 28 EHQVVAVAAR------DLSRAKEFAQKHDIPK-A-----YGSYEELAKDPNVEVAYVGTQ--HPQHKAAVMLCLAAGKAV 93 (334)
T ss_dssp TEEEEEEECS------SHHHHHHHHHHHTCSC-E-----ESSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHhcCCEE
Confidence 4677766554 3566777888887642 1 357788887 5899988775 333344577899999999
Q ss_pred EEcC
Q 011954 386 LGTA 389 (474)
Q Consensus 386 I~s~ 389 (474)
++-.
T Consensus 94 l~EK 97 (334)
T 3ohs_X 94 LCEK 97 (334)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9865
No 273
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=54.69 E-value=16 Score=27.07 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=22.2
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
|+.++|+++.... .....+...|.+.|++|...
T Consensus 1 mm~~~ilivdd~~------~~~~~l~~~l~~~~~~v~~~ 33 (124)
T 1srr_A 1 MMNEKILIVDDQS------GIRILLNEVFNKEGYQTFQA 33 (124)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHTTTCEEEEE
T ss_pred CCCceEEEEeCCH------HHHHHHHHHHHHCCcEEEEe
Confidence 4557899988643 45566777788889987643
No 274
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=54.66 E-value=13 Score=32.82 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=24.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+|+|+++. |....=..+++.|.+.||+|.+++.
T Consensus 5 ~m~ilVtG------atG~iG~~l~~~L~~~g~~V~~~~r 37 (287)
T 3sc6_A 5 KERVIITG------ANGQLGKQLQEELNPEEYDIYPFDK 37 (287)
T ss_dssp CEEEEEES------TTSHHHHHHHHHSCTTTEEEEEECT
T ss_pred eeEEEEEC------CCCHHHHHHHHHHHhCCCEEEEecc
Confidence 35787664 2234566788889999999999985
No 275
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=54.65 E-value=70 Score=24.48 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHH-cCCCCeEE-EecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAE-KKIQDHVH-FVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA-- 380 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~-~~l~~~v~-~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma-- 380 (474)
...+++|+.+.+ .....++....+ .+. .+. .....++....+. ..|++++-... .+.-|..+++.+.
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHP----IVREGYRRLIERRPGY--AVVAEAADAGEAYRLYRETTPDIVVMDLTL-PGPGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHHTTCCSEEEECSCC-SSSCHHHHHHHHHHH
T ss_pred cccEEEEECCcH----HHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHh
Confidence 346777777653 345555655554 332 232 2233334344433 35887764331 3344566666553
Q ss_pred -cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 -FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 -~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..+|+|.. .... ..+.+..|..+++..+-+ .++|.++|..++.
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 77 DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSD--PAELVQAIEAILA 124 (153)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSC--TTHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHh
Confidence 36787664 3222 123344577899999988 8999999998876
No 276
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=54.63 E-value=1.1e+02 Score=26.59 Aligned_cols=215 Identities=12% Similarity=0.045 Sum_probs=101.6
Q ss_pred cccccCEEEEEec-CCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhh
Q 011954 70 NFMKSKLVLLVSH-ELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTA 148 (474)
Q Consensus 70 ~~~~~~kIl~v~~-~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (474)
+..+..+|.++.+ .....-....+..+.+++.+.|+++.++....+.... .. .......
T Consensus 7 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~~--------------~~~~l~~ 66 (289)
T 3g85_A 7 NSQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCL------HL--------------EKGISKE 66 (289)
T ss_dssp ----CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCG------GG--------------CGGGSTT
T ss_pred ccCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhH------HH--------------HHHHHhc
Confidence 3344678999987 4332222466777778888899999887643222110 00 0112234
Q ss_pred cCCCEEEEcccchhhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcCC
Q 011954 149 LNADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGIR 228 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (474)
.++|-|++....... ...... . ....|++..-... .....+..+.........+.+.+. .
T Consensus 67 ~~vdgiIi~~~~~~~--~~~~~~-~-~~~iPvV~~~~~~-------------~~~~~V~~D~~~~~~~a~~~L~~~---G 126 (289)
T 3g85_A 67 NSFDAAIIANISNYD--LEYLNK-A-SLTLPIILFNRLS-------------NKYSSVNVDNYKMGEKASLLFAKK---R 126 (289)
T ss_dssp TCCSEEEESSCCHHH--HHHHHH-C-CCSSCEEEESCCC-------------SSSEEEEECHHHHHHHHHHHHHHT---T
T ss_pred cCCCEEEEecCCccc--HHHHHh-c-cCCCCEEEECCCC-------------CCCCEEEeCHHHHHHHHHHHHHHc---C
Confidence 688988887543322 111111 1 1224555432211 112223333333333333333332 3
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCc
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPS 308 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (474)
..++-++....+..... .+...-.+.-++.+++.+...+. .+.. ..+...+++.++.+ ++++
T Consensus 127 ~~~i~~i~~~~~~~~~~------~R~~gf~~~l~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~l~-------~~~~ 188 (289)
T 3g85_A 127 YKSAAAILTESLNDAMD------NRNKGFIETCHKNGIKISENHII-AAEN----SIHGGVDAAKKLMK-------LKNT 188 (289)
T ss_dssp CCBCEEEECCCSSHHHH------HHHHHHHHHHHHTTCBCCGGGEE-ECCS----SHHHHHHHHHHHTT-------SSSC
T ss_pred CCEEEEEeCCcccccHH------HHHHHHHHHHHHcCCCCChhhee-ccCC----CHHHHHHHHHHHHc-------CCCC
Confidence 45676765432211110 00000122233456544332222 3433 33444455555543 3466
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKT 347 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~ 347 (474)
...+++.++. ....+.+.+++.|+. +.|.+.|+.
T Consensus 189 ~~ai~~~~d~-----~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 189 PKALFCNSDS-----IALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp CSEEEESSHH-----HHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CcEEEEcCCH-----HHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 7778887652 445667777888764 778888865
No 277
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=54.56 E-value=21 Score=27.07 Aligned_cols=110 Identities=7% Similarity=0.116 Sum_probs=65.4
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCC--CCchHHHHHHh---
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGE--CFGRITIEAMA--- 380 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E--~~~~~~~EAma--- 380 (474)
..+++|+.+.+ .....++...++.|. .|......++....+. ..|++++-..- .+ .-|..+++.+.
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 6 HPIIYLVDHQK----DARAALSKLLSPLDV--TIQCFASAESFMRQQISDDAIGMIIEAHL-EDKKDSGIELLETLVKRG 78 (136)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHTTSSS--EEEEESSHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHHHHHHHhCC
Confidence 45777887754 355667777766654 4544433222222222 24777664331 33 45666666554
Q ss_pred cCCCEEEc-CCCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 381 FQLPVLGT-AAGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 381 ~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
..+|+|.- .... ..+.+..|..+++..|-+ .++|..+|.+++..
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFI--EHVLVHDVQQIING 126 (136)
T ss_dssp CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCC--HHHHHHHHHHHHhc
Confidence 36787654 3332 233445678899999988 99999999988763
No 278
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=54.56 E-value=33 Score=25.59 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=23.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+++|+++.... .....+...|.+.|++|...+.
T Consensus 1 ~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~~ 33 (134)
T 3f6c_A 1 SLNAIIIDDHP------LAIAAIRNLLIKNDIEILAELT 33 (134)
T ss_dssp CEEEEEECCCH------HHHHHHHHHHHHTTEEEEEEES
T ss_pred CeEEEEEcCCH------HHHHHHHHHHhhCCcEEEEEcC
Confidence 36788888643 4566777888889988874443
No 279
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=54.55 E-value=30 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+|+|++.. |..-.=..+++.|.+.|++|.++....
T Consensus 5 ~~~vlVTG------atG~iG~~l~~~L~~~G~~V~~~~r~~ 39 (341)
T 3enk_A 5 KGTILVTG------GAGYIGSHTAVELLAHGYDVVIADNLV 39 (341)
T ss_dssp SCEEEEET------TTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred CcEEEEec------CCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45666543 223445678888999999999887543
No 280
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=54.38 E-value=18 Score=29.89 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=25.5
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+.|+|+++. |....=..+++.|.+.|++|.+++..
T Consensus 1 M~~~~ilVtG------atG~iG~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 1 MAVKKIAIFG------ATGQTGLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCCCEEEEES------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEEc------CCcHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3347777653 22345677888888999999999854
No 281
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=54.35 E-value=31 Score=32.06 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 325 ETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 325 ~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.+..++.+++++... ...++.++++. .|+++..+. ...-.-.+.+|+.+|++|++-.
T Consensus 56 ~~~a~~~a~~~~~~~------~~~~~~~ll~~~~iD~V~i~tp--~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 56 AEKVEALAKRFNIAR------WTTDLDAALADKNDTMFFDAAT--TQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp SHHHHHHHHHTTCCC------EESCHHHHHHCSSCCEEEECSC--SSSSHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHHhCCCc------ccCCHHHHhcCCCCCEEEECCC--chHHHHHHHHHHHCCCeEEEcC
Confidence 355677778887631 12578888876 788888775 3444456789999999999754
No 282
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=54.26 E-value=40 Score=28.68 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
..++||++. || ......++.|.+.|.+|+|+.+.
T Consensus 30 ~gk~VLVVG------gG-~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVG------GG-TIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEEC------CS-HHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEEC------CC-HHHHHHHHHHHHCCCEEEEECCC
Confidence 356788774 33 67788889999999999999864
No 283
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=54.20 E-value=5.4 Score=32.70 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=41.6
Q ss_pred HHHHhcCCEEEEcCCCCCCCCch--HHHHHHhcCCCEEEcCCCCc-ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 351 SPYLASIDVLVQNSQARGECFGR--ITIEAMAFQLPVLGTAAGGT-MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 351 ~~~~~~adv~v~ps~~~~E~~~~--~~~EAma~G~PvI~s~~~g~-~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
.-+...||.+|.-. .++|. .+.||+..++||++-+.-+. ..++.+.....+.-.+| ++++.+.|.+++.
T Consensus 102 ~~m~~~sda~Ivlp----Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~--~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 102 NINALSSNVLVAVG----MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAAD--VAGAIAAVKQLLA 173 (176)
T ss_dssp CCCGGGCSEEEEES----CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESS--HHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEec----CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCC--HHHHHHHHHHHHH
Confidence 34556788877532 23443 57788999999999876221 11222222223333444 8899888887764
No 284
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=53.91 E-value=15 Score=28.56 Aligned_cols=36 Identities=19% Similarity=0.022 Sum_probs=26.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|||+++.... .|..+..+..+++.|.+.|++|.++.
T Consensus 1 mki~iiy~S~-~Gnt~~~a~~i~~~l~~~g~~v~~~~ 36 (147)
T 1f4p_A 1 PKALIVYGST-TGNTEYTAETIARELADAGYEVDSRD 36 (147)
T ss_dssp CEEEEEEECS-SSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CeEEEEEECC-cCHHHHHHHHHHHHHHhcCCeeEEEe
Confidence 5777776422 24446888889999998999998875
No 285
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=53.80 E-value=19 Score=26.74 Aligned_cols=31 Identities=39% Similarity=0.404 Sum_probs=22.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
+++|+++.... .....+...|.+.|++|...
T Consensus 2 ~~~ILivdd~~------~~~~~l~~~l~~~g~~v~~~ 32 (122)
T 3gl9_A 2 SKKVLLVDDSA------VLRKIVSFNLKKEGYEVIEA 32 (122)
T ss_dssp CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEeCCH------HHHHHHHHHHHHCCcEEEEe
Confidence 46899988643 45556777888899998754
No 286
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=53.77 E-value=1.3e+02 Score=27.24 Aligned_cols=46 Identities=17% Similarity=0.009 Sum_probs=28.1
Q ss_pred ccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 69 LNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++..+...|.++.+.....-....+..+.+++.+.|+++.+.....
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 110 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAY 110 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3334466899998764332223566677778888999998876543
No 287
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=53.75 E-value=24 Score=28.37 Aligned_cols=67 Identities=22% Similarity=0.200 Sum_probs=40.1
Q ss_pred HHhcCCEEEEcCCCCCCCCchHHHH---HHhcCCCEEEcC-----CCCc--------ceeeee-------------CCce
Q 011954 353 YLASIDVLVQNSQARGECFGRITIE---AMAFQLPVLGTA-----AGGT--------MEIVVN-------------GTTG 403 (474)
Q Consensus 353 ~~~~adv~v~ps~~~~E~~~~~~~E---Ama~G~PvI~s~-----~~g~--------~e~v~~-------------~~~G 403 (474)
.+..||++|.--.. .+.=+-+..| |.+.|+||++-. .|+. .|+.++ ..+|
T Consensus 66 ~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 66 NVLASDLLVALLDG-PTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 47889998864221 2223445555 789999998762 2221 112111 1278
Q ss_pred eeecCCCCChHHHHHHHHHHh
Q 011954 404 LLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 404 ~l~~~~d~~~~~la~~i~~ll 424 (474)
.++.. .+++.++|..++
T Consensus 145 ~~~~~----~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSS----EEDLLEEIKQRL 161 (162)
T ss_dssp EEESS----HHHHHHHHHHTC
T ss_pred eEEeC----HHHHHHHHHHHh
Confidence 88854 778888887654
No 288
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=53.64 E-value=14 Score=34.72 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=40.5
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcC
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALN 150 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (474)
+|+++|||++.. | + ....+++++++.|++|.+++..... ..... +.+.. ..+.......+..+.+..+
T Consensus 4 m~~~~~ilI~g~-----g-~-~~~~~~~a~~~~G~~~v~v~~~~~~--~~~~~-~ad~~--~~~~~~d~~~l~~~~~~~~ 71 (403)
T 4dim_A 4 MYDNKRLLILGA-----G-R-GQLGLYKAAKELGIHTIAGTMPNAH--KPCLN-LADEI--SYMDISNPDEVEQKVKDLN 71 (403)
T ss_dssp --CCCEEEEECC-----C-G-GGHHHHHHHHHHTCEEEEEECSSCC--HHHHH-HCSEE--EECCTTCHHHHHHHTTTSC
T ss_pred ccCCCEEEEECC-----c-H-hHHHHHHHHHHCCCEEEEEcCCCCC--Ccchh-hCCeE--EEecCCCHHHHHHHHHHcC
Confidence 356789999864 2 1 2456889999999999999643211 11100 01000 0001111233445556678
Q ss_pred CCEEEEc
Q 011954 151 ADLVVLN 157 (474)
Q Consensus 151 ~DiV~~~ 157 (474)
+|.|+..
T Consensus 72 ~d~v~~~ 78 (403)
T 4dim_A 72 LDGAATC 78 (403)
T ss_dssp CSEEECC
T ss_pred CCEEEeC
Confidence 9999974
No 289
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=53.53 E-value=50 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=23.1
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
.+++|+++.... .....+...|.+.|++|....
T Consensus 5 ~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 37 (132)
T 3lte_A 5 QSKRILVVDDDQ------AMAAAIERVLKRDHWQVEIAH 37 (132)
T ss_dssp --CEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCccEEEEECCH------HHHHHHHHHHHHCCcEEEEeC
Confidence 357899998643 456667788888999887554
No 290
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=53.43 E-value=20 Score=26.78 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=24.3
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
|.+++|+++.... .....+...|.+.|++|..+
T Consensus 3 m~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 35 (132)
T 2rdm_A 3 LEAVTILLADDEA------ILLLDFESTLTDAGFLVTAV 35 (132)
T ss_dssp CSSCEEEEECSSH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEEcCcH------HHHHHHHHHHHHcCCEEEEE
Confidence 4567899998642 45667777888889988754
No 291
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=53.29 E-value=15 Score=31.28 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=27.8
Q ss_pred cccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 70 NFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 70 ~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
-+|++|||.++.. ...-..++..|.+.|++|.++...
T Consensus 19 ~~m~mmkI~IIG~-------G~mG~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 19 YFQSMTTYAIIGA-------GAIGSALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp TGGGSCCEEEEEC-------HHHHHHHHHHHHHTTCCEEEECTT
T ss_pred hhhcCCEEEEECC-------CHHHHHHHHHHHhCCCEEEEEECC
Confidence 3466789999873 245667888899999999985544
No 292
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=53.26 E-value=25 Score=30.10 Aligned_cols=38 Identities=13% Similarity=-0.073 Sum_probs=20.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|++||+|.+...- .+...--....+.+.|++|.+++..
T Consensus 1 m~~vL~v~aHPDD--e~l~~ggtia~~~~~G~~v~vv~lT 38 (227)
T 1uan_A 1 MLDLLVVAPHPDD--GELGCGGTLARAKAEGLSTGILDLT 38 (227)
T ss_dssp CEEEEEEESSTTH--HHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEEEeCCCc--HHHhHHHHHHHHHhCCCcEEEEEEc
Confidence 4678888864321 1111111223344679998887733
No 293
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=53.14 E-value=18 Score=33.40 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=44.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcC--CEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASI--DVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~a--dv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.+++++... ...++.+++... |+++..+. ...-.-.+.+|+..|++
T Consensus 29 ~~~~l~av~d~------~~~~~~~~a~~~~~~~------~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkh 94 (359)
T 3m2t_A 29 QDIRIVAACDS------DLERARRVHRFISDIP------VLDNVPAMLNQVPLDAVVMAGP--PQLHFEMGLLAMSKGVN 94 (359)
T ss_dssp TTEEEEEEECS------SHHHHGGGGGTSCSCC------EESSHHHHHHHSCCSEEEECSC--HHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHhcCCCc------ccCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCe
Confidence 78888855443 2455555555543211 125788888765 88888775 33334456789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 95 Vl~EK 99 (359)
T 3m2t_A 95 VFVEK 99 (359)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 98754
No 294
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=53.03 E-value=17 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=25.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||+|+++. |....=..+++.|.+.|++|.+++..
T Consensus 4 m~~ilItG------atG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLIG------ASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEET------CCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEEc------CCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 56777663 33456678888999999999999854
No 295
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=52.93 E-value=18 Score=29.45 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=23.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|++++||++..+. .....+...|.+.|++|..+.
T Consensus 5 m~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 38 (184)
T 3rqi_A 5 MSDKNFLVIDDNE------VFAGTLARGLERRGYAVRQAH 38 (184)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEEcCCH------HHHHHHHHHHHHCCCEEEEeC
Confidence 5578999998743 456667778888999885443
No 296
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=52.79 E-value=20 Score=28.20 Aligned_cols=38 Identities=34% Similarity=0.307 Sum_probs=27.2
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|.+|||.+=+... | -..-..+.+.|.++||+|.=+...
T Consensus 5 m~~mkI~igsDha---G-~~lK~~i~~~L~~~G~eV~D~G~~ 42 (148)
T 4em8_A 5 MVVKRVFLSSDHA---G-VELRLFLSAYLRDLGCEVFDCGCD 42 (148)
T ss_dssp CSCSEEEEEECGG---G-HHHHHHHHHHHHHTTCEEEECCCC
T ss_pred ceeeEEEEEECch---h-HHHHHHHHHHHHHCCCEEEEeCCC
Confidence 5578998877632 2 245667788999999999876543
No 297
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=52.70 E-value=32 Score=31.03 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=25.3
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++.|+||+.. |....=..+++.|.+.|++|.++...
T Consensus 18 ~~~~~vlVTG------asG~iG~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 18 GSHMRILITG------GAGCLGSNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp TTCCEEEEET------TTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred CCCCEEEEEC------CCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3367777663 22345567788899999999998854
No 298
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=52.67 E-value=31 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=23.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||+|+++. |....=..+++.|.+.|++|.++...
T Consensus 1 M~~ilVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 1 MNSILICG------GAGYIGSHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp -CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEC------CCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35676653 22345667888888999999998754
No 299
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=52.59 E-value=35 Score=31.41 Aligned_cols=34 Identities=24% Similarity=0.039 Sum_probs=23.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|+|++.. |....=..+++.|.+.|++|.+++...
T Consensus 25 ~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 58 (375)
T 1t2a_A 25 NVALITG------ITGQDGSYLAEFLLEKGYEVHGIVRRS 58 (375)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cEEEEEC------CCchHHHHHHHHHHHCCCEEEEEECCc
Confidence 5666553 223455677888888999999988543
No 300
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=52.31 E-value=9.2 Score=31.69 Aligned_cols=40 Identities=20% Similarity=0.042 Sum_probs=25.9
Q ss_pred ccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+|||+++......+|.. ..+..+++.+. .|++|.++-..
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~ 45 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADIS 45 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCT
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHH
Confidence 457999999766555543 44555555555 68999888644
No 301
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=52.22 E-value=1.2e+02 Score=26.27 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=28.1
Q ss_pred ccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcE-EEEEeCC
Q 011954 69 LNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAE-VVWITNQ 113 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~ 113 (474)
++..+..+|.++.+.....-....+..+.+++.+.|++ +.+....
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 50 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTN 50 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 33344678999988654322235666777788889999 6665443
No 302
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=52.14 E-value=37 Score=26.60 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=26.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.||+|++-.-.-+=--.-.+..++..|.++||+|+|....
T Consensus 6 ~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 6 TGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred ceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCH
Confidence 5778777533211111135777888999999999998854
No 303
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=51.97 E-value=23 Score=29.78 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=52.4
Q ss_pred EEEEEEc--CCCCcCchHHHHHHHHHHHcCCCCeEEEec----CCCChHHHHhcCCEEEEcCCCCCCCC-----------
Q 011954 309 MHAVVVG--SDMNAQTKFETELRNFVAEKKIQDHVHFVN----KTLTVSPYLASIDVLVQNSQARGECF----------- 371 (474)
Q Consensus 309 ~~l~i~G--~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~adv~v~ps~~~~E~~----------- 371 (474)
-++.++. .+.++..++...+++..+++|. .+..+. ..++..+.+..+|.+++|. .+.+
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~--~v~~~~i~~~~~~~~~~~l~~ad~I~l~G---G~~~~l~~~L~~~gl 102 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGL--LVEELDIATESLGEITTKLRKNDFIYVTG---GNTFFLLQELKRTGA 102 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTC--EEEECCTTTSCHHHHHHHHHHSSEEEECC---SCHHHHHHHHHHHTH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCC--eEEEEEecCCChHHHHHHHHhCCEEEECC---CCHHHHHHHHHHCCh
Confidence 4566665 3332334577788888888887 466663 3355667889999999986 2322
Q ss_pred chHHHHHHhcCCCEEEcCCC
Q 011954 372 GRITIEAMAFQLPVLGTAAG 391 (474)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~~ 391 (474)
--.+-|+...|+|++.+..|
T Consensus 103 ~~~l~~~~~~G~p~~G~sAG 122 (206)
T 3l4e_A 103 DKLILEEIAAGKLYIGESAG 122 (206)
T ss_dssp HHHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHHcCCeEEEECHH
Confidence 22456888889999988644
No 304
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=51.48 E-value=44 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=30.2
Q ss_pred cCE--EEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKL--VLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~k--Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+| |+++.. ...+| .+++..++.++...|.+|.++++.
T Consensus 190 glkvvva~vGD-l~~~~-nrva~Sl~~~~~~~G~~v~~~~P~ 229 (359)
T 1zq6_A 190 GKKYVLTWTYH-PKPLN-TAVANSALTIATRMGMDVTLLCPT 229 (359)
T ss_dssp TCEEEEEECCC-SSCCC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCeeEEEEEec-ccccc-cchHHHHHHHHHHcCCEEEEEcCc
Confidence 678 666654 43444 689999999999999999999976
No 305
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=51.13 E-value=55 Score=29.40 Aligned_cols=40 Identities=8% Similarity=-0.098 Sum_probs=32.1
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
..+||+++... -.+++..++.++...|.+|.++++..-..
T Consensus 147 ~gl~va~vGD~-----~~rva~Sl~~~~~~~g~~v~~~~P~~~~~ 186 (307)
T 2i6u_A 147 RGLRLSYFGDG-----ANNMAHSLLLGGVTAGIHVTVAAPEGFLP 186 (307)
T ss_dssp TTCEEEEESCT-----TSHHHHHHHHHHHHTTCEEEEECCTTSCC
T ss_pred CCeEEEEECCC-----CcCcHHHHHHHHHHCCCEEEEECCccccC
Confidence 35789998762 13899999999999999999999865443
No 306
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=51.08 E-value=36 Score=29.29 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=23.2
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
.|.+++|+++.... .....+...|.+.|+.|....
T Consensus 34 ~m~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 68 (249)
T 3q9s_A 34 RMNEQRILVIEDDH------DIANVLRMDLTDAGYVVDHAD 68 (249)
T ss_dssp ---CCEEEEECSCH------HHHHHHHHHHHTTTCEEEEES
T ss_pred CCCCCEEEEEECCH------HHHHHHHHHHHHCCCEEEEeC
Confidence 35567999998743 456667778888898766543
No 307
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=50.91 E-value=36 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=25.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|++|+|++.. |....=..+++.|.+.||+|.++....
T Consensus 7 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 43 (357)
T 1rkx_A 7 WQGKRVFVTG------HTGFKGGWLSLWLQTMGATVKGYSLTA 43 (357)
T ss_dssp HTTCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hCCCEEEEEC------CCchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4467777663 223455677888889999999988543
No 308
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=50.79 E-value=36 Score=31.41 Aligned_cols=34 Identities=24% Similarity=0.109 Sum_probs=23.5
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|+||+.. |....=..+++.|.+.|++|.++....
T Consensus 29 k~vlVtG------atG~IG~~l~~~L~~~g~~V~~~~r~~ 62 (381)
T 1n7h_A 29 KIALITG------ITGQDGSYLTEFLLGKGYEVHGLIRRS 62 (381)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CeEEEEc------CCchHHHHHHHHHHHCCCEEEEEecCC
Confidence 5666553 223455677888888999999988543
No 309
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=50.73 E-value=57 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=31.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNE 117 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 117 (474)
..+||+++... .++++.++.++...|.+|.++++..-..
T Consensus 154 ~gl~va~vGD~------~rva~Sl~~~~~~~g~~v~~~~P~~~~~ 192 (315)
T 1pvv_A 154 KGVKVVYVGDG------NNVAHSLMIAGTKLGADVVVATPEGYEP 192 (315)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTCCC
T ss_pred CCcEEEEECCC------cchHHHHHHHHHHCCCEEEEECCccccC
Confidence 35789998762 4899999999999999999999865443
No 310
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=50.72 E-value=1.1e+02 Score=25.38 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~P 384 (474)
+++|+.+.+ .....+.......+. .|......++....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~lr~~~~~~~ 76 (225)
T 1kgs_A 4 RVLVVEDER----DLADLITEALKKEMF--TVDVCYDGEEGMYMALNEPFDVVILDIML-PVHDGWEILKSMRESGVNTP 76 (225)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHTTCCCC
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCC
Confidence 556666643 355566666666553 3443333333333332 35887764331 3345666666654 3678
Q ss_pred EEEcC-CCC---cceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGTA-AGG---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|.-. ... ..+.+..|..|++..|-+ .++|..+|..++.
T Consensus 77 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 77 VLMLTALSDVEYRVKGLNMGADDYLPKPFD--LRELIARVRALIR 119 (225)
T ss_dssp EEEEESSCHHHHHHHTCCCCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHh
Confidence 87643 222 233455677899999988 9999999988864
No 311
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=50.69 E-value=36 Score=28.77 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=43.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhhhhcccchhccceeeeeh-------hcHHH
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSA-------KGEKA 144 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 144 (474)
++||+++.+ |....+..+.+++.+.+ ++|..+..+.+.... .+.....|++++.. .....
T Consensus 8 ~~ri~vl~S-----G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~------l~~A~~~gIp~~~~~~~~~~~~~~~~ 76 (215)
T 3kcq_A 8 ELRVGVLIS-----GRGSNLEALAKAFSTEESSVVISCVISNNAEARG------LLIAQSYGIPTFVVKRKPLDIEHIST 76 (215)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCBTTBCHHHHHH
T ss_pred CCEEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHH------HHHHHHcCCCEEEeCcccCChHHHHH
Confidence 568888775 33366788888886643 677655543332211 12234456665532 22345
Q ss_pred HhhhcCCCEEEEcc
Q 011954 145 INTALNADLVVLNT 158 (474)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (474)
..+..++|+|++-.
T Consensus 77 ~L~~~~~Dlivlag 90 (215)
T 3kcq_A 77 VLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHTTCSEEEESS
T ss_pred HHHHhCCCEEEEeC
Confidence 56678999999864
No 312
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=50.59 E-value=21 Score=34.25 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.6
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
||++|||++. +++ ....+++++++.|++|.++...
T Consensus 4 ~~~k~ILI~g------~g~-~~~~i~~a~~~~G~~vv~v~~~ 38 (461)
T 2dzd_A 4 RRIRKVLVAN------RGE-IAIRVFRACTELGIRTVAIYSK 38 (461)
T ss_dssp CCCSEEEECS------CHH-HHHHHHHHHHHHTCEEEEEECG
T ss_pred CcCcEEEEEC------CcH-HHHHHHHHHHHcCCEEEEEECC
Confidence 4567899873 333 4677899999999999998754
No 313
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=50.57 E-value=21 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=23.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
..++|+++.... .....+...|.+.|++|..+.
T Consensus 4 ~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 36 (140)
T 3h5i_A 4 KDKKILIVEDSK------FQAKTIANILNKYGYTVEIAL 36 (140)
T ss_dssp --CEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCcEEEEEeCCH------HHHHHHHHHHHHcCCEEEEec
Confidence 457899998643 456677788888999987553
No 314
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=50.37 E-value=50 Score=30.28 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=25.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
||||+++.. | ..-..++.+.++.|++|.++....
T Consensus 1 MK~I~ilGg-----g--~~g~~~~~~Ak~~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGG-----K--LQGFEAAYLSKKAGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECC-----S--HHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCEEEEECC-----C--HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 567888752 3 345678888999999999997543
No 315
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=50.25 E-value=69 Score=23.09 Aligned_cols=107 Identities=10% Similarity=0.135 Sum_probs=60.0
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh---cCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---FQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---~G~P 384 (474)
+++|+.+.+ .....++...+..|.. .+......++....+. ..|++++-..- .+.-|..+++.+. .+.|
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~~-vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 4 RVLIVDDAA----FMRMMLKDIITKAGYE-VAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHHHHHHHCTTCC
T ss_pred eEEEEcCcH----HHHHHHHHHHhhcCcE-EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHhhCCCCe
Confidence 566666643 3456666666665541 1222333223333332 36877764321 2334566666553 4677
Q ss_pred EEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 385 VLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 385 vI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
+|.. ..... .+....|..+++..|-+ .+++.+++..++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ--PSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHh
Confidence 7654 33322 23344577899999988 999999987764
No 316
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=50.14 E-value=13 Score=31.12 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=25.3
Q ss_pred cccCEEEEEecCCCCCChh-HHHHHHHHHHHhcCcEEE-EEe
Q 011954 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGAEVV-WIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~-v~~ 111 (474)
|.+|||+++......+|.. ..+..+++.+ +.|++|. ++-
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~-~~g~~v~~~id 44 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIA-PEGIAITPLGS 44 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHC-CTTEEEEECCC
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHc-cCCCEEEEEEe
Confidence 5568999999877666654 3344444444 4688888 554
No 317
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=50.09 E-value=20 Score=27.20 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=24.4
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
++++||++.... .....+...|.+.|++|..+.
T Consensus 6 ~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 38 (142)
T 3cg4_A 6 HKGDVMIVDDDA------HVRIAVKTILSDAGFHIISAD 38 (142)
T ss_dssp CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCCeEEEEcCCH------HHHHHHHHHHHHCCeEEEEeC
Confidence 467899998643 566777888888899876543
No 318
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=50.04 E-value=23 Score=27.51 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|++++|+++.... .....+...|.+.|++|..+.
T Consensus 5 ~~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 2rjn_A 5 YKNYTVMLVDDEQ------PILNSLKRLIKRLGCNIITFT 38 (154)
T ss_dssp CSCCEEEEECSCH------HHHHHHHHHHHTTTCEEEEES
T ss_pred CCCCeEEEEcCCH------HHHHHHHHHHHHcCCeEEEeC
Confidence 3467899998743 456777788888999887543
No 319
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=49.87 E-value=25 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.5
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
++++||++.... .....+...|.+.|++|..+.
T Consensus 13 ~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 45 (153)
T 3hv2_A 13 RRPEILLVDSQE------VILQRLQQLLSPLPYTLHFAR 45 (153)
T ss_dssp SCCEEEEECSCH------HHHHHHHHHHTTSSCEEEEES
T ss_pred CCceEEEECCCH------HHHHHHHHHhcccCcEEEEEC
Confidence 467899998643 456677888888999887553
No 320
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=49.77 E-value=16 Score=31.83 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=26.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+|++++-.-+.|| --.-.++.|.+.|++|.|+...
T Consensus 59 ~~v~VlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 59 KHVFVIAGPGNNGG---DGLVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp CEEEEEECSSHHHH---HHHHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCCCHH---HHHHHHHHHHHCCCeEEEEEcC
Confidence 36999886544444 3456788899999999998754
No 321
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=49.73 E-value=24 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=22.8
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
|.+++|+++.... .....+...|.+.|++|...
T Consensus 1 m~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~ 33 (138)
T 3c3m_A 1 MSLYTILVVDDSP------MIVDVFVTMLERGGYRPITA 33 (138)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCcceEEEEeCCH------HHHHHHHHHHHHcCceEEEe
Confidence 3457899988643 45566777788889987743
No 322
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=49.49 E-value=7.5 Score=32.41 Aligned_cols=41 Identities=10% Similarity=-0.092 Sum_probs=25.0
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEE-EEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV-WITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~-v~~~~ 113 (474)
++|||++|......++....+.+.+..+.+.|++|. ++...
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~ 44 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA 44 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCST
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHH
Confidence 468999999877766654333333333334688988 65543
No 323
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=49.36 E-value=1.3e+02 Score=26.07 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=28.2
Q ss_pred cccCEEEEEecCCCC--CChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+...|.++.+.... .-....+..+.+++.+.|+++.++...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 49 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI 49 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 346789999886542 112356667777888899999887543
No 324
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=49.23 E-value=46 Score=30.16 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=31.3
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
..+||+++.. |-.+++..++.++...|.+|.++++..-.
T Consensus 166 ~gl~va~vGD-----~~~rva~Sl~~~~~~~G~~v~~~~P~~~~ 204 (325)
T 1vlv_A 166 KGVKVVFMGD-----TRNNVATSLMIACAKMGMNFVACGPEELK 204 (325)
T ss_dssp TTCEEEEESC-----TTSHHHHHHHHHHHHTTCEEEEESCGGGC
T ss_pred CCcEEEEECC-----CCcCcHHHHHHHHHHCCCEEEEECCcccc
Confidence 3578999876 11389999999999999999999976543
No 325
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=49.17 E-value=34 Score=30.36 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=51.5
Q ss_pred hHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceeeee------------------CCce-----eee
Q 011954 350 VSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVN------------------GTTG-----LLH 406 (474)
Q Consensus 350 ~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v~~------------------~~~G-----~l~ 406 (474)
-..-++.||++|..... .|+|--.+++++.....++.....|+.-+-.. ...| +..
T Consensus 42 d~~~l~~Adlvv~~G~~-~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~Wl 120 (284)
T 2prs_A 42 DVKRLQNADLVVWVGPE-MEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWL 120 (284)
T ss_dssp HHHHHHHCSEEEECCTT-TCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGGG
T ss_pred HHHHHHcCCEEEEcCCC-cHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCcccC
Confidence 34567889999987653 78888788877654333444333333111000 0112 223
Q ss_pred cCCCCChHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 011954 407 PTGKEGVTPLANNIVKLAT--HVERRLTMGKKGYERVKD 443 (474)
Q Consensus 407 ~~~d~~~~~la~~i~~ll~--~~~~~~~~~~~~~~~~~~ 443 (474)
++.. ...+++.|...|. ||+-.....+|+.++..+
T Consensus 121 dp~~--~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 157 (284)
T 2prs_A 121 SPEI--ARATAVAIHGKLVELMPQSRAKLDANLKDFEAQ 157 (284)
T ss_dssp CHHH--HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3333 5667777766665 887777777777766544
No 326
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=49.15 E-value=35 Score=28.50 Aligned_cols=103 Identities=8% Similarity=0.072 Sum_probs=60.4
Q ss_pred EEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--c-CCCE
Q 011954 311 AVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--F-QLPV 385 (474)
Q Consensus 311 l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~-G~Pv 385 (474)
++|+.+.+ .....+.......|. .|......++....+. ..|++++|. .-|+.+++.+. . .+|+
T Consensus 3 ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilp~-----~~g~~~~~~lr~~~~~~~i 71 (223)
T 2hqr_A 3 VLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHSSIVV 71 (223)
T ss_dssp EEEECSCH----HHHHHHHHHHGGGTC--CEEEESSHHHHHHHHTTSCCSEEEECC-----TTHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCH----HHHHHHHHHHHHCCc--EEEEECCHHHHHHHHhcCCCCEEEeCC-----CCHHHHHHHHHhCCCCCcE
Confidence 45555543 345566666666554 3444333333333333 358888443 34566665553 3 6777
Q ss_pred EEc-CCCCc---ceeeeeCCceeeecCC-CCChHHHHHHHHHHhhC
Q 011954 386 LGT-AAGGT---MEIVVNGTTGLLHPTG-KEGVTPLANNIVKLATH 426 (474)
Q Consensus 386 I~s-~~~g~---~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (474)
|.- ..... .+.+..|..|++..|. + .++|..+|..++..
T Consensus 72 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~--~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 72 LVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 115 (223)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEETTCSC--THHHHHHHHHHTSS
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCC--HHHHHHHHHHHhcc
Confidence 654 33221 2334457789999998 8 99999999988764
No 327
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=48.99 E-value=57 Score=27.55 Aligned_cols=74 Identities=8% Similarity=0.091 Sum_probs=42.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHh-cCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh------------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------ 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (474)
++||+++.+ |.+..+..+..++.+ .+++|..+..+.+.... .+.-...|++++...
T Consensus 5 ~~riavl~S-----G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~------~~~A~~~gIp~~~~~~~~~~~r~~~d~ 73 (215)
T 3tqr_A 5 PLPIVVLIS-----GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYG------LKRAQQADIPTHIIPHEEFPSRTDFES 73 (215)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHH------HHHHHHTTCCEEECCGGGSSSHHHHHH
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHH------HHHHHHcCCCEEEeCccccCchhHhHH
Confidence 567888775 233567777777765 36787765544332211 122344566654321
Q ss_pred cHHHHhhhcCCCEEEEcc
Q 011954 141 GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~ 158 (474)
......+..++|+|++-.
T Consensus 74 ~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 74 TLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 123455678999999864
No 328
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=48.96 E-value=15 Score=35.64 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 114 (474)
+++|+++.. +..|--.-+..|++.|.++ ||+|++++...
T Consensus 6 ~~~vl~~p~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 6 TPHVAIIPS--PGMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp CCEEEEECC--SCHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CcEEEEecC--cchhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 357777752 2223235688999999998 99999998654
No 329
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=48.94 E-value=1.4e+02 Score=26.20 Aligned_cols=215 Identities=9% Similarity=0.014 Sum_probs=96.2
Q ss_pred ccccccCEEEEEecC-----CCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHH
Q 011954 69 LNFMKSKLVLLVSHE-----LSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEK 143 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~-----~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (474)
++..+..+|.++.+. ....-....+..+.+++.+.|+++.++....+. .. .....
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~-----------------~~~~~ 76 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSG---DL-----------------YHEVK 76 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHH---HH-----------------HHHHH
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCCh---HH-----------------HHHHH
Confidence 333456789999886 221111245666667778899999886543211 00 00112
Q ss_pred HHhhhcCCCEEEEcccch-hhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHH
Q 011954 144 AINTALNADLVVLNTAVA-GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTR 222 (474)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (474)
......++|-|++..... ...+..+... ..|+|..-..... .....+..+.........+.+.
T Consensus 77 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~~-----~iPvV~i~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~ 140 (305)
T 3huu_A 77 TMIQSKSVDGFILLYSLKDDPIEHLLNEF-----KVPYLIVGKSLNY-----------ENIIHIDNDNIDAAYQLTQYLY 140 (305)
T ss_dssp HHHHTTCCSEEEESSCBTTCHHHHHHHHT-----TCCEEEESCCCSS-----------TTCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCcCCcHHHHHHHHc-----CCCEEEECCCCcc-----------cCCcEEEeCHHHHHHHHHHHHH
Confidence 233456889887764322 2222222222 2355543222100 1112222222222333333333
Q ss_pred HHhcCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHH-HHHHHH
Q 011954 223 ERLGIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYES-LQLIRE 301 (474)
Q Consensus 223 ~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l-~~~~~~ 301 (474)
+. ...++-++....+..... .+...-.+.-++.|++... ++.+.... ..+++.++ .+
T Consensus 141 ~~---G~~~I~~i~~~~~~~~~~------~R~~Gf~~~l~~~g~~~~~---~~~~~~~~------~~~~~~~~~l~---- 198 (305)
T 3huu_A 141 HL---GHRHILFLQESGHYAVTE------DRSVGFKQYCDDVKISNDC---VVIKSMND------LRDFIKQYCID---- 198 (305)
T ss_dssp HT---TCCSEEEEEESSCBHHHH------HHHHHHHHHHHHTTCCCCE---EEECSHHH------HHHHC----------
T ss_pred HC---CCCeEEEEcCCcccchhH------HHHHHHHHHHHHcCCCccc---EEecCcHH------HHHHHHHhhhc----
Confidence 22 345677765433221110 0000011223345665443 23443322 33344444 33
Q ss_pred hccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCCCC
Q 011954 302 KKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKTLT 349 (474)
Q Consensus 302 ~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~~ 349 (474)
.+++...+++.++. ....+.+.+++.|+. +.|.+.|+...
T Consensus 199 ---~~~~~~ai~~~nd~-----~A~g~~~al~~~g~~vP~di~vig~D~~ 240 (305)
T 3huu_A 199 ---ASHMPSVIITSDVM-----LNMQLLNVLYEYQLRIPEDIQTATFNTS 240 (305)
T ss_dssp -----CCCSEEEESSHH-----HHHHHHHHHHHTTCCTTTTCEEEEESCS
T ss_pred ---CCCCCCEEEECChH-----HHHHHHHHHHHcCCCCCcceEEEEECCc
Confidence 22566777777652 444566777888774 78999997533
No 330
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=48.85 E-value=55 Score=29.41 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=30.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
.+||+++.. + .+++..++.++...|.+|.++++..-.
T Consensus 146 gl~va~vGD----~--~~va~Sl~~~~~~~G~~v~~~~P~~~~ 182 (307)
T 3tpf_A 146 IAKVAFIGD----S--NNMCNSWLITAAILGFEISIAMPKNYK 182 (307)
T ss_dssp CCEEEEESC----S--SHHHHHHHHHHHHHTCEEEEECCTTCC
T ss_pred CCEEEEEcC----C--CccHHHHHHHHHHcCCEEEEECCCccC
Confidence 678999976 1 378999999999999999999976543
No 331
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=48.77 E-value=21 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=26.6
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|..++|+++.. .+.-..+++.|.+.|++|+++...
T Consensus 1 ~~~~~vlI~G~-------G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 1 HRKDHFIVCGH-------SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCCSCEEEECC-------SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCcEEEECC-------CHHHHHHHHHHHHCCCCEEEEECC
Confidence 44567777741 367788899999999999999864
No 332
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=48.72 E-value=28 Score=28.48 Aligned_cols=37 Identities=5% Similarity=-0.011 Sum_probs=28.1
Q ss_pred CEEEEEecCCCCCCh-hHHHHHHHHHHHhc------CcEEEEEe
Q 011954 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGV------GAEVVWIT 111 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~------G~~V~v~~ 111 (474)
|||+++......+|. ...+..+++.+.+. |++|.++-
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 689999976655454 46677778888876 79999886
No 333
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=48.70 E-value=63 Score=29.41 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.++++++... ..+++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~g~~~~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~ 92 (344)
T 3mz0_A 26 SGAEIVAVTDV------NQEAAQKVVEQYQLNAT-----VYPNDDSLLADENVDAVLVTSW--GPAHESSVLKAIKAQKY 92 (344)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHTTCCCE-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCCCe-----eeCCHHHHhcCCCCCEEEECCC--chhHHHHHHHHHHCCCc
Confidence 77888755554 35667778888875211 12577888876 899988775 34444466789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 93 vl~EK 97 (344)
T 3mz0_A 93 VFCEK 97 (344)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 98754
No 334
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=48.65 E-value=49 Score=29.80 Aligned_cols=68 Identities=9% Similarity=0.195 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH-hcCCEEEEcCCCCCCCCchHHHHHHhcCCCE
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL-ASIDVLVQNSQARGECFGRITIEAMAFQLPV 385 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~-~~adv~v~ps~~~~E~~~~~~~EAma~G~Pv 385 (474)
++++++ +-+. ..+..++++++++... .+..+. +.+ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 26 ~~~~l~-v~d~------~~~~~~~~a~~~g~~~--~~~~~~----~~l~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~V 90 (323)
T 1xea_A 26 PDIELV-LCTR------NPKVLGTLATRYRVSA--TCTDYR----DVLQYGVDAVMIHAA--TDVHSTLAAFFLHLGIPT 90 (323)
T ss_dssp TTEEEE-EECS------CHHHHHHHHHHTTCCC--CCSSTT----GGGGGCCSEEEECSC--GGGHHHHHHHHHHTTCCE
T ss_pred CCceEE-EEeC------CHHHHHHHHHHcCCCc--cccCHH----HHhhcCCCEEEEECC--chhHHHHHHHHHHCCCeE
Confidence 678888 4443 3456677777777531 111222 233 67899998875 344444566899999999
Q ss_pred EEcC
Q 011954 386 LGTA 389 (474)
Q Consensus 386 I~s~ 389 (474)
++-.
T Consensus 91 ~~EK 94 (323)
T 1xea_A 91 FVDK 94 (323)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8753
No 335
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=48.65 E-value=47 Score=30.66 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=40.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHH-hhhcC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAI-NTALN 150 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (474)
|++|||.||.. | ..=..++..|.+.||+|.++...... ...+...++... ...... ....+
T Consensus 20 m~~mkIgiIGl----G---~mG~~~A~~L~~~G~~V~v~dr~~~~---------~~~l~~~g~~~~--~s~~e~~~~a~~ 81 (358)
T 4e21_A 20 FQSMQIGMIGL----G---RMGADMVRRLRKGGHECVVYDLNVNA---------VQALEREGIAGA--RSIEEFCAKLVK 81 (358)
T ss_dssp --CCEEEEECC----S---HHHHHHHHHHHHTTCEEEEECSCHHH---------HHHHHTTTCBCC--SSHHHHHHHSCS
T ss_pred hcCCEEEEECc----h---HHHHHHHHHHHhCCCEEEEEeCCHHH---------HHHHHHCCCEEe--CCHHHHHhcCCC
Confidence 45689999863 2 45567888999999999988533210 111222233221 122222 23356
Q ss_pred CCEEEEcccch
Q 011954 151 ADLVVLNTAVA 161 (474)
Q Consensus 151 ~DiV~~~~~~~ 161 (474)
+|+|++..+..
T Consensus 82 ~DvVi~~vp~~ 92 (358)
T 4e21_A 82 PRVVWLMVPAA 92 (358)
T ss_dssp SCEEEECSCGG
T ss_pred CCEEEEeCCHH
Confidence 89999876544
No 336
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=48.60 E-value=18 Score=31.09 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=28.4
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
|||++ +. .||.+ ..+.+|+..|++.|+.|.++-...
T Consensus 1 mkI~v-s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAV-AG---KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEE-EC---SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEE-ec---CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57877 42 56665 778999999999999999997543
No 337
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=48.50 E-value=31 Score=28.49 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=26.3
Q ss_pred CEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+||++... |+. .....++++.|.+.|++|+++...
T Consensus 2 k~IllgvT----Gs~aa~k~~~l~~~L~~~g~~V~vv~T~ 37 (189)
T 2ejb_A 2 QKIALCIT----GASGVIYGIKLLQVLEELDFSVDLVISR 37 (189)
T ss_dssp CEEEEEEC----SSTTHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CEEEEEEE----CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 57777665 222 356889999999999999998854
No 338
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=48.30 E-value=75 Score=26.72 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=41.6
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh------------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------ 140 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (474)
|||+++.+ |+ ...+..+..++.+. +++|..+..+.+.... .......+++++...
T Consensus 1 ~ri~vl~S----g~-gsnl~ali~~~~~~~~~~~i~~Vis~~~~~~~------~~~A~~~gIp~~~~~~~~~~~r~~~~~ 69 (212)
T 1jkx_A 1 MNIVVLIS----GN-GSNLQAIIDACKTNKIKGTVRAVFSNKADAFG------LERARQAGIATHTLIASAFDSREAYDR 69 (212)
T ss_dssp CEEEEEES----SC-CHHHHHHHHHHHTTSSSSEEEEEEESCTTCHH------HHHHHHTTCEEEECCGGGCSSHHHHHH
T ss_pred CEEEEEEE----CC-cHHHHHHHHHHHcCCCCceEEEEEeCCCchHH------HHHHHHcCCcEEEeCcccccchhhccH
Confidence 47877775 22 24577788887665 5787655433322211 223345566665421
Q ss_pred cHHHHhhhcCCCEEEEcc
Q 011954 141 GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~ 158 (474)
......+..++|+|++-.
T Consensus 70 ~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 70 ELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHGGGCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 123445668999999864
No 339
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=47.86 E-value=21 Score=31.42 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=24.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|||+++. . | ..=..+++.|.+.||+|++++..
T Consensus 4 m~~~ilVtG---a-G---~iG~~l~~~L~~~g~~V~~~~r~ 37 (286)
T 3ius_A 4 MTGTLLSFG---H-G---YTARVLSRALAPQGWRIIGTSRN 37 (286)
T ss_dssp -CCEEEEET---C-C---HHHHHHHHHHGGGTCEEEEEESC
T ss_pred CcCcEEEEC---C-c---HHHHHHHHHHHHCCCEEEEEEcC
Confidence 457888774 1 3 34556788888999999999854
No 340
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=47.85 E-value=28 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=28.3
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
||||+.+.+... ..-+..|+++|++.| +|.|+.+....
T Consensus 1 M~ILlTNDDGi~---apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (244)
T 2e6c_A 1 MRILVTNDDGIY---SPGLWALAEAASQFG-EVFVAAPDTEQ 38 (244)
T ss_dssp CEEEEECSSCTT---CHHHHHHHHHHTTTS-EEEEEEECSSC
T ss_pred CeEEEEcCCCCC---cHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 689888775322 245889999999988 99999966544
No 341
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.77 E-value=1.4e+02 Score=25.86 Aligned_cols=217 Identities=11% Similarity=-0.007 Sum_probs=104.1
Q ss_pred cccCEEEEEecC-----CCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHh
Q 011954 72 MKSKLVLLVSHE-----LSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAIN 146 (474)
Q Consensus 72 ~~~~kIl~v~~~-----~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (474)
.+..+|.++.+. ....-....+..+.+++.+.|+++.++...... .. ........
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~-----------------~~~~~~~~ 65 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEE---EI-----------------FNGVVKMV 65 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHH---HH-----------------HHHHHHHH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCH---HH-----------------HHHHHHHH
Confidence 346789999887 433323456667777888899999876543211 00 00122233
Q ss_pred hhcCCCEEEEcccch-hhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHh
Q 011954 147 TALNADLVVLNTAVA-GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERL 225 (474)
Q Consensus 147 ~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (474)
...++|-|++..... ...+..+... ..|++..-...... .....+..+.........+.+.+ .
T Consensus 66 ~~~~vdgiIi~~~~~~~~~~~~l~~~-----~iPvV~~~~~~~~~----------~~~~~V~~D~~~~g~~a~~~L~~-~ 129 (292)
T 3k4h_A 66 QGRQIGGIILLYSRENDRIIQYLHEQ-----NFPFVLIGKPYDRK----------DEITYVDNDNYTAAREVAEYLIS-L 129 (292)
T ss_dssp HTTCCCEEEESCCBTTCHHHHHHHHT-----TCCEEEESCCSSCT----------TTSCEEECCHHHHHHHHHHHHHH-T
T ss_pred HcCCCCEEEEeCCCCChHHHHHHHHC-----CCCEEEECCCCCCC----------CCCCEEEECcHHHHHHHHHHHHH-C
Confidence 457899888754322 1222222222 23555432221110 00122222222223333333333 2
Q ss_pred cCCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccC
Q 011954 226 GIRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQ 305 (474)
Q Consensus 226 ~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~ 305 (474)
...++-++....+...... +...-.+.-++.|++.....+. .+... .+...+++.++.+ +
T Consensus 130 --G~~~i~~i~~~~~~~~~~~------R~~gf~~~l~~~g~~~~~~~~~-~~~~~----~~~~~~~~~~~l~-------~ 189 (292)
T 3k4h_A 130 --GHKQIAFIGGGSDLLVTRD------RLAGMSDALKLADIVLPKEYIL-HFDFS----RESGQQAVEELMG-------L 189 (292)
T ss_dssp --TCCCEEEEESCTTBHHHHH------HHHHHHHHHHHTTCCCCGGGEE-ECCSS----HHHHHHHHHHHHT-------S
T ss_pred --CCceEEEEeCcccchhHHH------HHHHHHHHHHHcCCCCChheEE-ecCCC----HHHHHHHHHHHHc-------C
Confidence 3457777764433221110 0000112233456654332222 34333 3334445555443 4
Q ss_pred CCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCCCC
Q 011954 306 VPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKTLT 349 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~~ 349 (474)
+++...+++.++. ....+.+.+++.|+. +.|.+.|+...
T Consensus 190 ~~~~~ai~~~~d~-----~a~g~~~al~~~g~~vP~di~vig~d~~ 230 (292)
T 3k4h_A 190 QQPPTAIMATDDL-----IGLGVLSALSKKGFVVPKDVSIVSFNNA 230 (292)
T ss_dssp SSCCSEEEESSHH-----HHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred CCCCcEEEEcChH-----HHHHHHHHHHHhCCCCCCeEEEEEecCc
Confidence 4677778887652 445667777888874 78889997533
No 342
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=47.77 E-value=37 Score=30.56 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=41.4
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEE
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL 386 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI 386 (474)
++++++-+-+.. .+..++++++++.. ..++...+-..+|+++..+. ...-.-.+.+|+..|++|+
T Consensus 29 ~~~~lvav~d~~------~~~~~~~~~~~g~~-------~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 29 SDWTLQGAWSPT------RAKALPICESWRIP-------YADSLSSLAASCDAVFVHSS--TASHFDVVSTLLNAGVHVC 93 (319)
T ss_dssp SSEEEEEEECSS------CTTHHHHHHHHTCC-------BCSSHHHHHTTCSEEEECSC--TTHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEECCC------HHHHHHHHHHcCCC-------ccCcHHHhhcCCCEEEEeCC--chhHHHHHHHHHHcCCeEE
Confidence 678887343321 12334455666643 12344444467899998775 3433446668999999999
Q ss_pred EcC
Q 011954 387 GTA 389 (474)
Q Consensus 387 ~s~ 389 (474)
+-.
T Consensus 94 ~eK 96 (319)
T 1tlt_A 94 VDK 96 (319)
T ss_dssp EES
T ss_pred EeC
Confidence 754
No 343
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=47.70 E-value=46 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=22.8
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~ 113 (474)
|+.||||+.. |....=..+++.|.+.| ++|.++...
T Consensus 1 M~~m~vlVTG------atG~iG~~l~~~L~~~g~~~~V~~~~r~ 38 (336)
T 2hun_A 1 MHSMKLLVTG------GMGFIGSNFIRYILEKHPDWEVINIDKL 38 (336)
T ss_dssp --CCEEEEET------TTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCCeEEEEC------CCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 4567877653 22345566777888876 899888753
No 344
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=47.63 E-value=26 Score=30.29 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=28.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+||+.|...-+--|-...+.+|+.+|+++|+.|.++-...
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4565555433222335789999999999999999997553
No 345
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=47.59 E-value=29 Score=30.94 Aligned_cols=61 Identities=10% Similarity=-0.070 Sum_probs=40.4
Q ss_pred CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCcceee---ee--CCceeeecCCC
Q 011954 348 LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIV---VN--GTTGLLHPTGK 410 (474)
Q Consensus 348 ~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~v---~~--~~~G~l~~~~d 410 (474)
+++.+++..+|++|-.|. .+..--.+..++..|+|+|...+|...+-. .. .+.++++.++-
T Consensus 80 ~dl~~ll~~aDVvIDFT~--p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~~~~~~a~N~ 145 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKYTTIVKSGNM 145 (288)
T ss_dssp SCHHHHTTSCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTTSEEEECSCC
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCcCCEEEECCC
Confidence 578888899999997665 444333456789999999987766433221 11 24666666653
No 346
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=47.23 E-value=25 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+++||++.... .....+...|.+.|++|..+.
T Consensus 7 ~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 38 (154)
T 3gt7_A 7 AGEILIVEDSP------TQAEHLKHILEETGYQTEHVR 38 (154)
T ss_dssp CCEEEEECSCH------HHHHHHHHHHHTTTCEEEEES
T ss_pred CCcEEEEeCCH------HHHHHHHHHHHHCCCEEEEeC
Confidence 57899998643 456777888888999886553
No 347
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=47.22 E-value=14 Score=27.88 Aligned_cols=41 Identities=10% Similarity=-0.057 Sum_probs=29.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~ 114 (474)
.+|++++.....+.....+...+|....++| ++|.++....
T Consensus 7 ~~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~ 49 (117)
T 2fb6_A 7 NDKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGA 49 (117)
T ss_dssp TSEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSH
T ss_pred CCeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECC
Confidence 3788888876443322245788898999999 7999998553
No 348
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=47.13 E-value=51 Score=27.87 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=23.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+++|+++.... .....+...|.+.|++|..+.
T Consensus 5 ~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~~ 36 (238)
T 2gwr_A 5 RQRILVVDDDA------SLAEMLTIVLRGEGFDTAVIG 36 (238)
T ss_dssp CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEEC
T ss_pred cCeEEEEeCCH------HHHHHHHHHHHHCCCEEEEEC
Confidence 46899998743 456667777888899976543
No 349
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=47.07 E-value=27 Score=28.82 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=27.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||+.+...-+--|-.....+|+..|++.|..|.++-..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456655543222233477999999999999999999754
No 350
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=47.03 E-value=36 Score=28.03 Aligned_cols=33 Identities=36% Similarity=0.443 Sum_probs=23.6
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
++++|+++..+. .....+...|.+.|++|...+
T Consensus 12 m~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 44 (205)
T 1s8n_A 12 VPRRVLIAEDEA------LIRMDLAEMLREEGYEIVGEA 44 (205)
T ss_dssp CCCEEEEECSSH------HHHHHHHHHHHHTTCEEEEEE
T ss_pred CCccEEEEECCH------HHHHHHHHHHHHCCCEEEEEe
Confidence 346899998743 456667777888899987444
No 351
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=46.83 E-value=1.3e+02 Score=25.41 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=62.6
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEE
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLG 387 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~ 387 (474)
+..+.++-.. ...++++++++. .+.+....-+ .+.+..+|+++..+- .+..-..+.++...|+||-.
T Consensus 54 GA~VtVvap~------~~~~l~~l~~~~----~i~~i~~~~~-~~dL~~adLVIaAT~--d~~~N~~I~~~ak~gi~VNv 120 (223)
T 3dfz_A 54 GAAITVVAPT------VSAEINEWEAKG----QLRVKRKKVG-EEDLLNVFFIVVATN--DQAVNKFVKQHIKNDQLVNM 120 (223)
T ss_dssp CCCEEEECSS------CCHHHHHHHHTT----SCEEECSCCC-GGGSSSCSEEEECCC--CTHHHHHHHHHSCTTCEEEC
T ss_pred CCEEEEECCC------CCHHHHHHHHcC----CcEEEECCCC-HhHhCCCCEEEECCC--CHHHHHHHHHHHhCCCEEEE
Confidence 4566666543 345577777653 3444432111 344677898887654 33334444554458999988
Q ss_pred cCCCCc-----ceeeeeCCceeeecCCCCChHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHhcCH
Q 011954 388 TAAGGT-----MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT-----HVERRLTMGKKGYERVKDRFLE 447 (474)
Q Consensus 388 s~~~g~-----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-----~~~~~~~~~~~~~~~~~~~fs~ 447 (474)
.|.+.. +.++..+.--+-+..+-. .-.++..|.+-++ +-..+.+.....|+.+++.+.-
T Consensus 121 vD~p~~~~f~~Paiv~rg~l~iaIST~G~-sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~~~~~ 189 (223)
T 3dfz_A 121 ASSFSDGNIQIPAQFSRGRLSLAISTDGA-SPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHRLNVS 189 (223)
T ss_dssp -----CCSEECCEEEEETTEEEEEECTTS-CHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHCCSC
T ss_pred eCCcccCeEEEeeEEEeCCEEEEEECCCC-CcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 877654 444555544344433211 3455555544443 2233334444556666665543
No 352
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=46.79 E-value=74 Score=23.40 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHc-CCCCeEE-EecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh----
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEK-KIQDHVH-FVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA---- 380 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~-~l~~~v~-~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma---- 380 (474)
.+++|+.+.+ .....++...... +. .+. .....++...++. ..|++++-..- .+.-|..+++.+.
T Consensus 3 ~~ilivdd~~----~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~ 75 (130)
T 1dz3_A 3 IKVCIADDNR----ELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLEEKRPDILLLDIIM-PHLDGLAVLERIRAGFE 75 (130)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred eEEEEEcCCH----HHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 3566666543 2455555555544 21 222 2222233333332 35887764331 3334566666654
Q ss_pred cCCCEEE-cCCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 381 FQLPVLG-TAAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 381 ~G~PvI~-s~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
...|+|. |..+.. .+.+..|..+++..|-+ .+++.++|..++.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 76 HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD--MENLAHHIRQVYG 122 (130)
T ss_dssp SCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSC--CTTHHHHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 2455654 333322 23344577899999988 8999999988875
No 353
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=46.78 E-value=98 Score=27.51 Aligned_cols=111 Identities=7% Similarity=0.085 Sum_probs=64.3
Q ss_pred EEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC----
Q 011954 271 LLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK---- 346 (474)
Q Consensus 271 ~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~---- 346 (474)
.+++ +|.-...++-..+++.|-++.. .++.++.++.........+.+.+++..+++|.. .|..+.-
T Consensus 28 ~l~i-iGGgedk~~~~~i~~~~v~lag--------g~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~ 97 (291)
T 3en0_A 28 AILI-IGGAEDKVHGREILQTFWSRSG--------GNDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRDRA 97 (291)
T ss_dssp CEEE-ECSSCCSSSCCHHHHHHHHHTT--------GGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCSGG
T ss_pred eEEE-EECCCCccChHHHHHHHHHHcC--------CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecCcc
Confidence 3443 4443333333445555544321 145677777653322234667788888888873 5555531
Q ss_pred ---CCChHHHHhcCCEEEEcCCC--------CCCCCchHHHHHHhcC-CCEEEcCCC
Q 011954 347 ---TLTVSPYLASIDVLVQNSQA--------RGECFGRITIEAMAFQ-LPVLGTAAG 391 (474)
Q Consensus 347 ---~~~~~~~~~~adv~v~ps~~--------~~E~~~~~~~EAma~G-~PvI~s~~~ 391 (474)
.+++.+.+..||++.++.=. ..-+.--.+-|+...| +|++.+..|
T Consensus 98 ~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 98 QGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp GGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHH
T ss_pred ccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHH
Confidence 23467789999999987521 0112223466888899 899888655
No 354
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=46.76 E-value=68 Score=27.49 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc--CCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--QLP 384 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--G~P 384 (474)
.+++|+.+.+ .....++...+..+. .|.......+....+. ..|++++--.- .+.-|+.+++.+.. .+|
T Consensus 38 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~DlvllD~~l-p~~~G~~l~~~lr~~~~~~ 110 (249)
T 3q9s_A 38 QRILVIEDDH----DIANVLRMDLTDAGY--VVDHADSAMNGLIKAREDHPDLILLDLGL-PDFDGGDVVQRLRKNSALP 110 (249)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEEECCS-CHHHHHHHHHHHHTTCCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHcCCCCC
Confidence 4555555543 244455555554432 3333332222222222 25776664321 33345666665543 467
Q ss_pred EEEcC-CCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGTA-AGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s~-~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
||.-. .... .+.+..|..|++..|-+ .++|..+|..++.
T Consensus 111 iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~--~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 111 IIVLTARDTVEEKVRLLGLGADDYLIKPFH--PDELLARVKVQLR 153 (249)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHHHh
Confidence 76543 2221 23344577899999988 9999999998875
No 355
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=46.57 E-value=1.4e+02 Score=25.72 Aligned_cols=41 Identities=5% Similarity=-0.038 Sum_probs=28.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+..+|.++.+.....-....+..+.+++.+.|+++.++...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 44 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG 44 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 35689999886532222355677778888899999998754
No 356
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=46.55 E-value=30 Score=29.92 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=30.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
++|+|.++|+..-.--|=..+...|+++|+++|+.|..+=
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 4567888888755545555778899999999999999874
No 357
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=46.44 E-value=29 Score=27.81 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=36.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHH-hcCc--EEEEEeCCCCC--CchhhhhhcccchhccceeeeehhcHHHHh
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGA--EVVWITNQKPN--EPDEVIYSLEHKMLDRGVQVLSAKGEKAIN 146 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~-~~G~--~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (474)
|+|+|||||+..- . .-......+.+.+. +.|. ++.+.+..... ............+...|+.+ .. ..+.+.
T Consensus 2 ~~m~~vLFVC~gN-~-cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~-~ar~l~ 77 (161)
T 3jvi_A 2 PGSMKLLFVCLGN-I-CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQV-DS-ISRPVV 77 (161)
T ss_dssp --CEEEEEEESSS-S-SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCC-CC-BCCBCC
T ss_pred CCCcEEEEECCCc-h-hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCC-CC-eeeECC
Confidence 4578999999721 1 11234455555554 3443 46665522111 00111111223344556655 21 111111
Q ss_pred --hhcCCCEEEEcc
Q 011954 147 --TALNADLVVLNT 158 (474)
Q Consensus 147 --~~~~~DiV~~~~ 158 (474)
....+|+|++-+
T Consensus 78 ~~~~~~~DlIl~Md 91 (161)
T 3jvi_A 78 SSDFKNFDYIFAMD 91 (161)
T ss_dssp HHHHHHCSEEEESS
T ss_pred HHHhcCCCEEEEeC
Confidence 124689888865
No 358
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=46.34 E-value=30 Score=29.41 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=27.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+|++.+...-+--|-.....+|+.+|+++|+.|.++-...
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3555555422222334789999999999999999997543
No 359
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=46.15 E-value=43 Score=25.39 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=23.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|++++|+++.... .....+...|.+.|+++.+.+
T Consensus 3 ~~~~~ILivdd~~------~~~~~l~~~L~~~~~~~~v~~ 36 (144)
T 3kht_A 3 LRSKRVLVVEDNP------DDIALIRRVLDRKDIHCQLEF 36 (144)
T ss_dssp --CEEEEEECCCH------HHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEeCCH------HHHHHHHHHHHhcCCCeeEEE
Confidence 3467899998643 456677888888999855444
No 360
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=46.02 E-value=41 Score=25.82 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=41.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh--cHHHHh--hhc
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK--GEKAIN--TAL 149 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~ 149 (474)
+++|+++.. .+.-..+++.|.+.|++|.++...... .+.+...++.++... ....+. ...
T Consensus 7 ~~~viIiG~-------G~~G~~la~~L~~~g~~v~vid~~~~~---------~~~~~~~g~~~i~gd~~~~~~l~~a~i~ 70 (140)
T 3fwz_A 7 CNHALLVGY-------GRVGSLLGEKLLASDIPLVVIETSRTR---------VDELRERGVRAVLGNAANEEIMQLAHLE 70 (140)
T ss_dssp CSCEEEECC-------SHHHHHHHHHHHHTTCCEEEEESCHHH---------HHHHHHTTCEEEESCTTSHHHHHHTTGG
T ss_pred CCCEEEECc-------CHHHHHHHHHHHHCCCCEEEEECCHHH---------HHHHHHcCCCEEECCCCCHHHHHhcCcc
Confidence 356777652 367788999999999999999864221 112223455443321 111121 235
Q ss_pred CCCEEEEcccc
Q 011954 150 NADLVVLNTAV 160 (474)
Q Consensus 150 ~~DiV~~~~~~ 160 (474)
+.|+|++..+.
T Consensus 71 ~ad~vi~~~~~ 81 (140)
T 3fwz_A 71 CAKWLILTIPN 81 (140)
T ss_dssp GCSEEEECCSC
T ss_pred cCCEEEEECCC
Confidence 78999876654
No 361
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=46.01 E-value=65 Score=29.55 Aligned_cols=70 Identities=10% Similarity=0.149 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhc--CCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLAS--IDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~--adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.++++++... ...++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 47 ~~~~lvav~d~------~~~~~~~~a~~~g~~~~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 113 (357)
T 3ec7_A 47 SGVEVVAVCDI------VAGRAQAALDKYAIEAK-----DYNDYHDLINDKDVEVVIITAS--NEAHADVAVAALNANKY 113 (357)
T ss_dssp TTEEEEEEECS------STTHHHHHHHHHTCCCE-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhCCCCe-----eeCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 67888755543 23455667777764211 12577788874 899998775 33344467789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 114 Vl~EK 118 (357)
T 3ec7_A 114 VFCEK 118 (357)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 98754
No 362
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=45.85 E-value=23 Score=31.52 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=27.2
Q ss_pred ccCEEEEEecCCCCCChhH---HHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPL---LLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~---~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|||+++....+.. -+. ....+++++.+.||+|.++...
T Consensus 1 m~~~i~il~gg~s~e-~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 1 MTDKIAVLLGGTSAE-REVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCCEEEEECCCSSTT-HHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEEeCCCCcc-ceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 357899997422110 011 3468999999999999998754
No 363
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=45.79 E-value=38 Score=26.93 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=30.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+||+++... ..|..+..+..+++.|.+.|++|.++...
T Consensus 4 ~~kv~IvY~S-~~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 4 ETSIGVFYVS-EYGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCEEEEEECT-TSTTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEEEC-CChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 3578887643 34666889999999999999999988754
No 364
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=45.47 E-value=27 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=23.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
.+++||++.... .....+...|.+.|++|...+
T Consensus 8 ~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~~ 40 (140)
T 3cg0_A 8 DLPGVLIVEDGR------LAAATLRIQLESLGYDVLGVF 40 (140)
T ss_dssp CCCEEEEECCBH------HHHHHHHHHHHHHTCEEEEEE
T ss_pred CCceEEEEECCH------HHHHHHHHHHHHCCCeeEEEE
Confidence 367899998743 456677778888899987433
No 365
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=45.37 E-value=23 Score=29.49 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.3
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.+||++... ||. .....++++.|.+.|++|+++...
T Consensus 7 ~~k~IllgvT----Gs~aa~k~~~l~~~L~~~g~~V~vv~T~ 44 (194)
T 1p3y_1 7 KDKKLLIGIC----GSISSVGISSYLLYFKSFFKEIRVVMTK 44 (194)
T ss_dssp GGCEEEEEEC----SCGGGGGTHHHHHHHTTTSSEEEEEECH
T ss_pred CCCEEEEEEE----CHHHHHHHHHHHHHHHHCCCEEEEEEch
Confidence 3567877765 222 245788999999999999998854
No 366
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=45.35 E-value=28 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=26.3
Q ss_pred ccCEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+.|||+++|. +|+. ..+..+-++..++|.+|.+..
T Consensus 5 ~~mkIlL~C~----aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 5 KELKVLVLCA----GSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp CCEEEEEEES----SSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cCceEEEECC----CCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 3678999997 3332 556677777788999999976
No 367
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=45.35 E-value=19 Score=31.52 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=25.1
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|..+|+++|+ ||..-.=..+++.|.+.|++|.+....
T Consensus 23 m~~~k~vlIT-----Gas~gIG~a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 23 MSDTPVVLVT-----GGSRGIGAAVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp -CCSCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCCCEEEEE-----CCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4445677776 233345668888999999999887544
No 368
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=45.25 E-value=1.5e+02 Score=25.74 Aligned_cols=39 Identities=10% Similarity=-0.145 Sum_probs=25.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+.+|.++.+.....-.......+.+++.+.|+++.++..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 40 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 40 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence 357888887643222234566666777888999987765
No 369
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=44.88 E-value=24 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=21.2
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~ 110 (474)
..|++|+++.... .....+...|.+.| +.|..+
T Consensus 18 ~~m~~iLivdd~~------~~~~~l~~~L~~~~~~~~v~~~ 52 (150)
T 4e7p_A 18 GSHMKVLVAEDQS------MLRDAMCQLLTLQPDVESVLQA 52 (150)
T ss_dssp --CEEEEEECSCH------HHHHHHHHHHHTSTTEEEEEEE
T ss_pred CCccEEEEEcCCH------HHHHHHHHHHHhCCCcEEEEEE
Confidence 3478999998743 45666777788777 444443
No 370
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=44.88 E-value=24 Score=26.82 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=24.5
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|++++|+++.... .....+...|.+.|++|....
T Consensus 1 M~~~~ilivdd~~------~~~~~l~~~l~~~g~~v~~~~ 34 (143)
T 3jte_A 1 MSLAKILVIDDES------TILQNIKFLLEIDGNEVLTAS 34 (143)
T ss_dssp --CCEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEEcCCH------HHHHHHHHHHHhCCceEEEeC
Confidence 5678999998643 456677788888999887554
No 371
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=44.87 E-value=16 Score=33.06 Aligned_cols=32 Identities=6% Similarity=0.005 Sum_probs=26.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|||+++... ....+++++.+.|++|.++...
T Consensus 2 ~m~Ililg~g--------~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--------SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--------THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--------hHHHHHHHHHhCCCEEEEEECC
Confidence 5799999853 4668899999999999998754
No 372
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=44.82 E-value=20 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=23.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.|+.+|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 3 ~~k~~lVT-----Gas~gIG~~ia~~l~~~G~~V~~~~~~ 37 (246)
T 3osu_A 3 MTKSALVT-----GASRGIGRSIALQLAEEGYNVAVNYAG 37 (246)
T ss_dssp CSCEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 44556665 233335567888999999999887653
No 373
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=44.75 E-value=20 Score=31.17 Aligned_cols=36 Identities=17% Similarity=0.047 Sum_probs=23.5
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+..|+++|+- |..-.=..+++.|.+.|++|.+....
T Consensus 2 ~~~k~vlVTG-----as~gIG~aia~~l~~~G~~vv~~~~r 37 (258)
T 3oid_A 2 EQNKCALVTG-----SSRGVGKAAAIRLAENGYNIVINYAR 37 (258)
T ss_dssp -CCCEEEESS-----CSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEec-----CCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3445666662 32334567888999999999987543
No 374
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=44.67 E-value=33 Score=32.54 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=40.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
+|||+++.. | .....+++++++.|++|.++......... . +..... .........+..+.+..++|+
T Consensus 19 ~~~ili~g~-----g--~~g~~~~~a~~~~G~~v~~v~~~~~~~~~---~-~ad~~~--~~~~~d~~~l~~~~~~~~~d~ 85 (433)
T 2dwc_A 19 AQKILLLGS-----G--ELGKEIAIEAQRLGVEVVAVDRYANAPAM---Q-VAHRSY--VGNMMDKDFLWSVVEREKPDA 85 (433)
T ss_dssp CCEEEEESC-----S--HHHHHHHHHHHHTTCEEEEEESSTTCHHH---H-HSSEEE--ESCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-----C--HHHHHHHHHHHHCCCEEEEEECCCCChhh---h-hcceEE--ECCCCCHHHHHHHHHHcCCCE
Confidence 578999853 2 35667889999999999988755332110 0 000000 000111123344455578999
Q ss_pred EEEccc
Q 011954 154 VVLNTA 159 (474)
Q Consensus 154 V~~~~~ 159 (474)
|+....
T Consensus 86 V~~~~e 91 (433)
T 2dwc_A 86 IIPEIE 91 (433)
T ss_dssp EEECSS
T ss_pred EEECcc
Confidence 988653
No 375
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=44.56 E-value=26 Score=26.87 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=20.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
++.++|+++.... .....+...|.+.|++|..+
T Consensus 12 ~~~~~iLivdd~~------~~~~~l~~~L~~~g~~v~~~ 44 (143)
T 3m6m_D 12 VRSMRMLVADDHE------ANRMVLQRLLEKAGHKVLCV 44 (143)
T ss_dssp ---CEEEEECSSH------HHHHHHHHHHHC--CEEEEE
T ss_pred cccceEEEEeCCH------HHHHHHHHHHHHcCCeEEEe
Confidence 3468899998642 45666777788889988764
No 376
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=44.51 E-value=50 Score=27.90 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=41.5
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHh-cCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----------
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------- 140 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (474)
++|||+++.+ |.+..+..|..++.+ .+++|..+..+.+. . ..+.-...|++++...
T Consensus 11 ~~~ri~vl~S-----G~gsnl~all~~~~~~~~~eI~~Vis~~~a-~------~~~~A~~~gIp~~~~~~~~~~~r~~~d 78 (215)
T 3da8_A 11 APARLVVLAS-----GTGSLLRSLLDAAVGDYPARVVAVGVDREC-R------AAEIAAEASVPVFTVRLADHPSRDAWD 78 (215)
T ss_dssp SSEEEEEEES-----SCCHHHHHHHHHSSTTCSEEEEEEEESSCC-H------HHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred CCcEEEEEEe-----CChHHHHHHHHHHhccCCCeEEEEEeCCch-H------HHHHHHHcCCCEEEeCcccccchhhhh
Confidence 3678988875 223567777777654 34577655544331 1 1122344566554332
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
......+..++|+|++-.
T Consensus 79 ~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 79 VAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp HHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcC
Confidence 123455668999998864
No 377
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=44.39 E-value=60 Score=29.52 Aligned_cols=78 Identities=6% Similarity=-0.022 Sum_probs=45.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
.+||+++... ..+++..++.++...|.+|.++++..-.................|..+......... -.+.|+
T Consensus 155 gl~ia~vGD~-----~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~ea--v~~aDv 227 (333)
T 1duv_G 155 EMTLVYAGDA-----RNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKG--VEGADF 227 (333)
T ss_dssp GCEEEEESCT-----TSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHH--HTTCSE
T ss_pred CcEEEEECCC-----ccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHH--hCCCCE
Confidence 5789998762 138999999999999999999997654332222211111112334333222222221 246788
Q ss_pred EEEcc
Q 011954 154 VVLNT 158 (474)
Q Consensus 154 V~~~~ 158 (474)
|+...
T Consensus 228 vytd~ 232 (333)
T 1duv_G 228 IYTDV 232 (333)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88753
No 378
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=44.38 E-value=1.4e+02 Score=25.03 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=41.7
Q ss_pred chHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 011954 372 GRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVERRLTMGKKGYERV 441 (474)
Q Consensus 372 ~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 441 (474)
-.-+-|+||.-.-.+.- ....-..++.+ .-+.+.. -.+|.+.+.++-++...|.+|-+-.....
T Consensus 267 t~rvwe~~as~av~~~d~~fd~~~~i~~~--a~fyv~n----r~elid~in~~k~~~~~r~e~l~~qh~il 331 (351)
T 1jg7_A 267 TLRVWETMASDAVMLIDEEFDTKHRIIND--ARFYVNN----RAELIDRVNELKHSDVLRKEMLSIQHDIL 331 (351)
T ss_dssp CHHHHHHHTSSSEEEEEGGGCTTCCSCSC--GGGEECS----HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhhHhhhhcccCcccccccC--ceeEecC----HHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 35678999987554432 22222344422 3356654 68999999999999999988866444433
No 379
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=44.25 E-value=24 Score=26.73 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=23.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHh-cCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~ 111 (474)
++++|+++.... .....+...|.+ .|++|..+.
T Consensus 3 ~~~~ilivdd~~------~~~~~l~~~L~~~~~~~v~~~~ 36 (140)
T 3lua_A 3 LDGTVLLIDYFE------YEREKTKIIFDNIGEYDFIEVE 36 (140)
T ss_dssp CCCEEEEECSCH------HHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCeEEEEeCCH------HHHHHHHHHHHhccCccEEEEC
Confidence 467899998643 456667777888 899988543
No 380
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=44.09 E-value=1.5e+02 Score=25.25 Aligned_cols=54 Identities=7% Similarity=0.131 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC
Q 011954 284 GQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT 349 (474)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (474)
..+...+++.++.+ ++++...+++.++. ....+.+.+++.|+++.+.+.|+...
T Consensus 170 ~~~~~~~~~~~~l~-------~~~~~~ai~~~~d~-----~a~g~~~al~~~g~p~di~vig~d~~ 223 (276)
T 3ksm_A 170 DRGAARSEMLRLLK-------ETPTIDGLFTPNES-----TTIGALVAIRQSGMSKQFGFIGFDQT 223 (276)
T ss_dssp SHHHHHHHHHHHHH-------HCSCCCEEECCSHH-----HHHHHHHHHHHTTCTTSSEEEEESCC
T ss_pred cHHHHHHHHHHHHH-------hCCCceEEEECCch-----hhhHHHHHHHHcCCCCCeEEEEeCCC
Confidence 44555556665554 34677777777642 44556777888998888999997643
No 381
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=44.07 E-value=82 Score=29.01 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=31.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+.+||.++....+.....+++..++.++...|.+|.++++.
T Consensus 189 ~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~ 229 (359)
T 3kzn_A 189 RGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT 229 (359)
T ss_dssp TTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecc
Confidence 35788877654332223588999999999999999999975
No 382
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=43.95 E-value=46 Score=30.89 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=40.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
+|||+++.. | .....+++++++.|++|.++.......... +.... ..........+..+.+..++|+
T Consensus 11 ~~~ili~g~-----g--~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~----~~d~~--~~~~~~d~~~l~~~~~~~~~d~ 77 (391)
T 1kjq_A 11 ATRVMLLGS-----G--ELGKEVAIECQRLGVEVIAVDRYADAPAMH----VAHRS--HVINMLDGDALRRVVELEKPHY 77 (391)
T ss_dssp CCEEEEESC-----S--HHHHHHHHHHHTTTCEEEEEESSTTCGGGG----GSSEE--EECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-----C--HHHHHHHHHHHHcCCEEEEEECCCCCchhh----hccce--EECCCCCHHHHHHHHHHcCCCE
Confidence 578999863 2 356788999999999998887543321110 00000 0000111123344445578999
Q ss_pred EEEcc
Q 011954 154 VVLNT 158 (474)
Q Consensus 154 V~~~~ 158 (474)
|+...
T Consensus 78 v~~~~ 82 (391)
T 1kjq_A 78 IVPEI 82 (391)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99865
No 383
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=43.94 E-value=31 Score=25.21 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=61.8
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHH---hcCCC
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAM---AFQLP 384 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAm---a~G~P 384 (474)
+++|+.+.+ .....+.......+. .+......++....+. ..|++++-... .+.-|..+++.+ ..++|
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1dc7_A 5 IVWVVDDDS----SIRWVLERALAGAGL--TCTTFENGNEVLAALASKTPDVLLSDIRM-PGMDGLALLKQIKQRHPMLP 77 (124)
T ss_dssp CCEEECSSS----SHHHHHHHHHTTTTC--CCEECCCTTHHHHHSSSCCCSCEEECSCS-SHHHHCSTHHHHHHHCTTSC
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEeeec-CCCCHHHHHHHHHhhCCCCC
Confidence 456777654 356677777766554 3444444444444443 35777764331 111233344443 34677
Q ss_pred EEEc-CCC---CcceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 385 VLGT-AAG---GTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 385 vI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
+|.. ... ...+.+..|..+++..|-+ .+++..++..++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFD--IDEAVALVERAIS 120 (124)
T ss_dssp CCCBCCSTTSTTTTSSCTTCCCCCBCSSCC--HHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCcceEeeCCCC--HHHHHHHHHHHHH
Confidence 7653 222 2344455677889999988 9999999987753
No 384
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=43.78 E-value=11 Score=34.94 Aligned_cols=42 Identities=14% Similarity=-0.059 Sum_probs=26.9
Q ss_pred cccCEEEEEecCCCCC-Chh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLS-GGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~g-G~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|++|||+++....+.- ... .....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYIT 44 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEc
Confidence 5578999998422110 000 23577899999999999988743
No 385
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=43.39 E-value=25 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=24.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
|++++|+++.... .....+...|.+.|++|..+.
T Consensus 1 m~~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~~ 34 (140)
T 2qr3_A 1 MSLGTIIIVDDNK------GVLTAVQLLLKNHFSKVITLS 34 (140)
T ss_dssp -CCCEEEEECSCH------HHHHHHHHHHTTTSSEEEEEC
T ss_pred CCCceEEEEeCCH------HHHHHHHHHHHhCCcEEEEeC
Confidence 5678999998743 456677788888899887543
No 386
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=43.30 E-value=28 Score=31.05 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.3
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|+|+++. |....=..+++.|.+.|++|.+++..
T Consensus 1 M~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTG------GTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp -CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEEC------CCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 357777664 22345667888899999999999865
No 387
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=43.19 E-value=43 Score=31.45 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=62.7
Q ss_pred CCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 268 DDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 268 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
.+++.|+.+|-=.- | ..-++++.++.....+ ..++++++-+-+. ..+..++.+++++... + .
T Consensus 24 s~klrvgiIG~G~i--g-~~h~~~~~~~~~~~~~---~~~~~elvav~d~------~~~~a~~~a~~~~~~~-~-----y 85 (412)
T 4gqa_A 24 SARLNIGLIGSGFM--G-QAHADAYRRAAMFYPD---LPKRPHLYALADQ------DQAMAERHAAKLGAEK-A-----Y 85 (412)
T ss_dssp -CEEEEEEECCSHH--H-HHHHHHHHHHHHHCTT---SSSEEEEEEEECS------SHHHHHHHHHHHTCSE-E-----E
T ss_pred cccceEEEEcCcHH--H-HHHHHHHHhccccccc---cCCCeEEEEEEcC------CHHHHHHHHHHcCCCe-E-----E
Confidence 45688888874211 1 1345555554321111 1136777766554 4677788888887642 1 2
Q ss_pred CChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcC
Q 011954 348 LTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLPVLGTA 389 (474)
Q Consensus 348 ~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~ 389 (474)
.++.++++ ..|+++..+. ...-.-.+++|+.+|++|++-.
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 127 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSP--NHLHYTMAMAAIAAGKHVYCEK 127 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHcCCCeEeec
Confidence 57778886 4688888775 3334457889999999998864
No 388
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=43.11 E-value=1.4e+02 Score=29.18 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCCc--CchHHHHHHHHHHHcCCCCeEEEecCC--CChHHHHhcCCEEEEcCCCCCCCCchHHHHHH--hc
Q 011954 308 SMHAVVVGSDMNA--QTKFETELRNFVAEKKIQDHVHFVNKT--LTVSPYLASIDVLVQNSQARGECFGRITIEAM--AF 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~--~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm--a~ 381 (474)
+-.+.|+|.-+.. .+....+++++.+++|+.-++.+.|.. +++.. +..|++-+..+. ..+..+.+.| -+
T Consensus 153 ~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pgg~t~~ei~~-~~~A~~niv~~~----~~g~~~A~~Le~r~ 227 (525)
T 3aek_B 153 EVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRK-LGQAHFNVLMYP----ETGESAARHLERAC 227 (525)
T ss_dssp SCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEETTCCHHHHHT-GGGSSEEEECCH----HHHHHHHHHHHHHS
T ss_pred CCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-hccCCEEEEECh----hhHHHHHHHHHHHc
Confidence 4578888864321 123457899999999997777777643 44433 334455444332 2456777887 46
Q ss_pred CCCEEEc
Q 011954 382 QLPVLGT 388 (474)
Q Consensus 382 G~PvI~s 388 (474)
|+|.+..
T Consensus 228 GiP~i~~ 234 (525)
T 3aek_B 228 KQPFTKI 234 (525)
T ss_dssp CCCBCCC
T ss_pred CCCceec
Confidence 8898874
No 389
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=42.86 E-value=61 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=23.1
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.|+.+|+. |..-.=..+++.|.+.|++|.+....
T Consensus 5 ~k~vlVTG-----as~GIG~aia~~L~~~G~~V~~~~r~ 38 (324)
T 3u9l_A 5 KKIILITG-----ASSGFGRLTAEALAGAGHRVYASMRD 38 (324)
T ss_dssp CCEEEESS-----CSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC-----CCcHHHHHHHHHHHHCCCEEEEecCc
Confidence 35666662 22234567888999999999887643
No 390
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=42.74 E-value=29 Score=31.56 Aligned_cols=38 Identities=24% Similarity=0.146 Sum_probs=24.9
Q ss_pred cccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 70 NFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 70 ~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
..+++|+||++. |....=..+++.|.+.|++|.++...
T Consensus 23 ~~~~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 23 MEKDRKRILITG------GAGFVGSHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp ----CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccCCCEEEEEc------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 334567887663 22345667788888899999998854
No 391
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=42.56 E-value=1.6e+02 Score=25.21 Aligned_cols=42 Identities=12% Similarity=-0.048 Sum_probs=29.6
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+..+|.++.+.....-....+..+.+++.+.|+++.++...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGK 47 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEEST
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345679999876433333456677778888999999887654
No 392
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=42.55 E-value=50 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.094 Sum_probs=29.3
Q ss_pred cCEEEEEecCCCC------CChh-HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSL------SGGP-LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~------gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
++||+++...... .|.+ .-+......|++.|++|.+++....
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~ 53 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG 53 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 4689998864221 3333 4466677788889999999997654
No 393
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=42.13 E-value=97 Score=27.97 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=42.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNA 151 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
|+++||.+|.. |.+. ...++..|...|+++..++.............+ . +... +.....+....++
T Consensus 2 M~~~rvgiiG~----G~~~--~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~----~--~~~~--~~~~~~ll~~~~~ 67 (336)
T 2p2s_A 2 MKKIRFAAIGL----AHNH--IYDMCQQLIDAGAELAGVFESDSDNRAKFTSLF----P--SVPF--AASAEQLITDASI 67 (336)
T ss_dssp --CCEEEEECC----SSTH--HHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHS----T--TCCB--CSCHHHHHTCTTC
T ss_pred CCccEEEEECC----ChHH--HHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhc----C--CCcc--cCCHHHHhhCCCC
Confidence 66789999975 2221 223455566678998877755443222111111 0 1221 2335566666789
Q ss_pred CEEEEcccchh
Q 011954 152 DLVVLNTAVAG 162 (474)
Q Consensus 152 DiV~~~~~~~~ 162 (474)
|+|++.++...
T Consensus 68 D~V~i~tp~~~ 78 (336)
T 2p2s_A 68 DLIACAVIPCD 78 (336)
T ss_dssp CEEEECSCGGG
T ss_pred CEEEEeCChhh
Confidence 99999886543
No 394
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=41.99 E-value=31 Score=28.85 Aligned_cols=32 Identities=22% Similarity=-0.038 Sum_probs=22.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
|+|+|+++.... .....+...|.+.|++|...
T Consensus 1 M~~~ilivdd~~------~~~~~l~~~L~~~g~~v~~~ 32 (225)
T 1kgs_A 1 MNVRVLVVEDER------DLADLITEALKKEMFTVDVC 32 (225)
T ss_dssp -CCEEEEECSSH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEeCCH------HHHHHHHHHHHHCCCEEEEE
Confidence 357899998743 45566777788889998744
No 395
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=41.95 E-value=58 Score=29.38 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=22.4
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|+||+.. |....=..+++.|.+.|++|.++..
T Consensus 2 ~~vlVTG------atG~iG~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 2 AKLLITG------GCGFLGSNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cEEEEeC------CCchhHHHHHHHHHhCCCEEEEEeC
Confidence 5666553 2234556778888889999999874
No 396
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=41.93 E-value=96 Score=28.27 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.++++++ . ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 37 ~~~~lvav~d~------~~~~~~~~~~~~~~----~---~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 101 (354)
T 3q2i_A 37 DRAELIDVCDI------DPAALKAAVERTGA----R---GHASLTDMLAQTDADIVILTTP--SGLHPTQSIECSEAGFH 101 (354)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHHCC----E---EESCHHHHHHHCCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEcC------CHHHHHHHHHHcCC----c---eeCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCC
Confidence 57887755443 35666777777763 1 1357778887 7899988775 33333456789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 102 v~~EK 106 (354)
T 3q2i_A 102 VMTEK 106 (354)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98754
No 397
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=41.92 E-value=2.3e+02 Score=27.30 Aligned_cols=145 Identities=9% Similarity=0.041 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccc---cCcchHHHHHHHHH-HHHHHHH-hcc
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVS---RGKGQDLFLHSFYE-SLQLIRE-KKL 304 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~---~~Kg~~~ll~a~~~-l~~~~~~-~~~ 304 (474)
+++.+|.+..-.+..-.+-... -.+++++++++ ++.+....+. ...|.+..++++.+ +.+.... ...
T Consensus 145 P~~I~V~tTC~~e~IGdDl~~v-----~~~~~~~~~~p---Vi~v~tpgf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~ 216 (492)
T 3u7q_A 145 NKGISVQSECPIGLIGDDIESV-----SKVKGAELSKT---IVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTF 216 (492)
T ss_dssp CCCEEEEECTHHHHTTCCHHHH-----HHHHHHHHTCC---EEEECCCTTSSSSHHHHHHHHHHHHHHHTTTTTTTCCCC
T ss_pred CCEEEEECCcHHHHHhcCHHHH-----HHHHHHhhCCc---EEEecCCCCCCCchhHHHHHHHHHHHHHHhhhccccccc
Confidence 4555555555455443333222 23445555542 2322222232 23467777777765 3321000 000
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH--h
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAM--A 380 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm--a 380 (474)
...+-.+.|+|+-.. +....+++++.+++|+.-++.+.|. .+++..+- .|++-+..+. .++..+.+.| -
T Consensus 217 ~~~~~~VNIiG~~~~--~gD~~eik~lL~~~Gi~v~~~~~g~~t~~ei~~~~-~A~~niv~~~----~~~~~~A~~Le~~ 289 (492)
T 3u7q_A 217 ASTPYDVAIIGDYNI--GGDAWSSRILLEEMGLRCVAQWSGDGSISEIELTP-KVKLNLVHCY----RSMNYISRHMEEK 289 (492)
T ss_dssp CCCTTEEEEEEECCB--TTTTHHHHHHHHHTTCEEEEEEETTCCHHHHHHGG-GCSEEEESCH----HHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCC--hhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhh-cCcEEEEECh----HHHHHHHHHHHHH
Confidence 112346778885321 1245789999999999877777764 35554444 5566554432 1455667776 4
Q ss_pred cCCCEEEcC
Q 011954 381 FQLPVLGTA 389 (474)
Q Consensus 381 ~G~PvI~s~ 389 (474)
+|+|.+..+
T Consensus 290 ~GiP~i~~~ 298 (492)
T 3u7q_A 290 YGIPWMEYN 298 (492)
T ss_dssp HCCCEEECC
T ss_pred hCCceEecC
Confidence 799999764
No 398
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=41.91 E-value=63 Score=29.41 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=31.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
.+||+++... -.+++..++.++...|.+|.++++..-.
T Consensus 155 gl~va~vGD~-----~~~va~Sl~~~~~~~G~~v~~~~P~~~~ 192 (335)
T 1dxh_A 155 DISYAYLGDA-----RNNMGNSLLLIGAKLGMDVRIAAPKALW 192 (335)
T ss_dssp GCEEEEESCC-----SSHHHHHHHHHHHHTTCEEEEECCGGGS
T ss_pred CeEEEEecCC-----ccchHHHHHHHHHHcCCEEEEECCcccC
Confidence 5789998762 1389999999999999999999976543
No 399
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=41.86 E-value=34 Score=29.64 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=27.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++|+.+...-+--|-.....+|+.+|++.|+.|.++-.+.
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3454444322222335789999999999999999997543
No 400
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=41.82 E-value=91 Score=25.96 Aligned_cols=109 Identities=10% Similarity=0.107 Sum_probs=64.8
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHh--cCCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMA--FQLP 384 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma--~G~P 384 (474)
.+++|+.+.+ .....+....+..+. .|......++....+. ..|++++-..- .+.-|+.+++.+. ..+|
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEE----SLADPLAFLLRKEGF--EATVVTDGPAALAEFDRAGADIVLLDLML-PGMSGTDVCKQLRARSSVP 77 (230)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHHCSCS
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhccCCCEEEEECCC-CCCCHHHHHHHHHcCCCCC
Confidence 4567776653 355666777766554 3444333333333332 46887764331 3344666666553 4678
Q ss_pred EEEcCCC-C---cceeeeeCCceeeecCCCCChHHHHHHHHHHhhC
Q 011954 385 VLGTAAG-G---TMEIVVNGTTGLLHPTGKEGVTPLANNIVKLATH 426 (474)
Q Consensus 385 vI~s~~~-g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (474)
+|.-... . ..+.+..|..|++..|-+ .+++..+|..++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYS--ARELIARIRAVLRR 121 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCC--HHHHHHHHHHHHTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHhh
Confidence 7754322 1 123344577899999988 99999999988763
No 401
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=41.49 E-value=1.4e+02 Score=24.05 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=66.1
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC-CChHHHHhcCCEEEEcCCCCCCCC-chHHHHHHh---c
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT-LTVSPYLASIDVLVQNSQARGECF-GRITIEAMA---F 381 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~~~~~~~~adv~v~ps~~~~E~~-~~~~~EAma---~ 381 (474)
...+++|+.+.+ .....+.......|. .+...... +.+ -...|++++-.. ..+. |. +.+.+. .
T Consensus 11 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al---~~~~dlvl~D~~--mp~~~g~-l~~~~~~~~~ 78 (196)
T 1qo0_D 11 RELQVLVLNPPG----EVSDALVLQLIRIGC--SVRQCWPPPEAF---DVPVDVVFTSIF--QNRHHDE-IAALLAAGTP 78 (196)
T ss_dssp GGCEEEEESCTT----HHHHHHHHHHHHHTC--EEEEECSCCSSC---SSCCSEEEEECC--SSTHHHH-HHHHHHHSCT
T ss_pred cCCeEEEEcCCh----hHHHHHHHHHHHcCC--eEEEecCchhhC---CCCCCEEEEeCC--CCccchH-HHHHHhccCC
Confidence 356788888865 456677777777665 34433322 222 135688776433 2222 44 555554 4
Q ss_pred CCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 011954 382 QLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHVE 428 (474)
Q Consensus 382 G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (474)
.+|+|.- ..+.. .+.+..|..+++..|-+ .++|..+|..++....
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~--~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 79 RTTLVALVEYESPAVLSQIIELECHGVITQPLD--AHRVLPVLVSARRISE 127 (196)
T ss_dssp TCEEEEEECCCSHHHHHHHHHHTCSEEEESSCC--GGGHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCChHHHHHHHHcCCCeeEecCcC--HHHHHHHHHHHHHHHH
Confidence 6777653 33322 23345578899999988 9999999998876433
No 402
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=41.43 E-value=38 Score=31.33 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=50.1
Q ss_pred CChHHHHhcCCEEEEc--CCCCCCCC-chHHHHHHhcCCCEEEcCCCCcceeeeeCCceeee--cCCCCChHHHHHHHHH
Q 011954 348 LTVSPYLASIDVLVQN--SQARGECF-GRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLH--PTGKEGVTPLANNIVK 422 (474)
Q Consensus 348 ~~~~~~~~~adv~v~p--s~~~~E~~-~~~~~EAma~G~PvI~s~~~g~~e~v~~~~~G~l~--~~~d~~~~~la~~i~~ 422 (474)
.+..++++.....+.- |. .+.+ -=++.+|+.+|+-.|.-..+.+.+++.. ..++. +-.+ +++||+.|..
T Consensus 223 ~~~~~~l~~YKFyLafENs~--c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp--~SfI~~~dF~s--~~~La~yL~~ 296 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQ--GYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP--KSFVNVHDFKN--FDEAIDYIKY 296 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSC--CTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG--GGSEEGGGSSS--HHHHHHHHHH
T ss_pred ccHHHHHhcCcEEEEEeccC--CCCcccHHHHHHHhCCeEEEEECCCchhhhCCC--CceEEcccCCC--HHHHHHHHHH
Confidence 3455666666655542 22 2222 2367799999965555444455555532 34432 3344 9999999999
Q ss_pred HhhCHHHHHHHH
Q 011954 423 LATHVERRLTMG 434 (474)
Q Consensus 423 ll~~~~~~~~~~ 434 (474)
|.+|++++.++-
T Consensus 297 L~~n~~~Y~~y~ 308 (371)
T 2nzw_A 297 LHTHKNAYLDML 308 (371)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 999998877654
No 403
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=41.37 E-value=95 Score=22.21 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=58.3
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHh--cCCCE
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMA--FQLPV 385 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma--~G~Pv 385 (474)
+++|+.+.+ .....+.......|. .+.......+....+ ...|++++-..- .+.-|..+++.+. ...|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (121)
T 1zh2_A 3 NVLIVEDEQ----AIRRFLRTALEGDGM--RVFEAETLQRGLLEAATRKPDLIILDLGL-PDGDGIEFIRDLRQWSAVPV 75 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESEE-TTEEHHHHHHHHHTTCCCCE
T ss_pred EEEEEeCCH----HHHHHHHHHHhcCCC--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhCCCCcE
Confidence 455666543 345556666665543 343333222222222 246777653220 2234566666664 35676
Q ss_pred EEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 386 LGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 386 I~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
|.. ..... .+.+..|..+++..|-+ .+++..++..++.
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 76 IVLSARSEESDKIAALDAGADDYLSKPFG--IGELQARLRVALR 117 (121)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhcCCCeEEeCCcC--HHHHHHHHHHHHH
Confidence 643 33322 23344577899999988 9999999887653
No 404
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=41.34 E-value=34 Score=27.29 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=37.6
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHH-hcCc--EEEEEeCCCCCC--chhhhhhcccchhccceeeeehhcHHHH-
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGA--EVVWITNQKPNE--PDEVIYSLEHKMLDRGVQVLSAKGEKAI- 145 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~-~~G~--~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (474)
|+++|||||+... . .-......+.+.+. +.|. ++.+.+...... ...........+...|+.+ ... .+.+
T Consensus 3 ~~~~~vLFVC~gN-~-cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~-~~~-ar~l~ 78 (157)
T 3n8i_A 3 QATKSVLFVCLGN-I-CRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPM-SHV-ARQIT 78 (157)
T ss_dssp -CCEEEEEEESSS-S-SHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCC-CCC-CCBCC
T ss_pred CCCCEEEEECCCc-h-hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCC-CCc-eeECC
Confidence 5578999999721 1 11233445555543 3554 355555221110 0011111223345556665 221 1111
Q ss_pred -hhhcCCCEEEEccc
Q 011954 146 -NTALNADLVVLNTA 159 (474)
Q Consensus 146 -~~~~~~DiV~~~~~ 159 (474)
.....+|+|++-+.
T Consensus 79 ~~~~~~~DlIi~M~~ 93 (157)
T 3n8i_A 79 KEDFATFDYILCMDE 93 (157)
T ss_dssp HHHHHHCSEEEESSH
T ss_pred HHHcCCCCEEEEeCc
Confidence 12246899888653
No 405
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=40.98 E-value=36 Score=25.27 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=25.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+++||+++|. .+.|-.......+-+.+.+.|+++.+-+
T Consensus 20 ~~kkIlvvC~-sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 20 SKRKIIVACG-GAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp SSEEEEEESC-SCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccEEEEECC-CCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3678999997 2222112346788888999999876655
No 406
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=40.94 E-value=14 Score=33.89 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=27.1
Q ss_pred cccCEEEEEecCCCCCChhH-----HHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPL-----LLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~-----~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|++|||+++.... +.|+ ....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gG~---s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (343)
T 1e4e_A 1 MNRIKVAILFGGC---SEEHDVSVKSAIEIAANINKEKYEPLYIGIT 44 (343)
T ss_dssp -CCEEEEEEEECS---STTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEeCCC---CCCcchhHHHHHHHHHHhhhcCCEEEEEEEc
Confidence 4578999997421 1122 4567899999999999988643
No 407
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=40.74 E-value=1.8e+02 Score=25.18 Aligned_cols=212 Identities=14% Similarity=0.030 Sum_probs=97.4
Q ss_pred ccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhh
Q 011954 69 LNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTA 148 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (474)
++..+..+|.++. .....-....+..+.+++.+.|+++.+.....+.. . ...... ...
T Consensus 7 L~~~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~-------------------~~~~~~-l~~ 64 (289)
T 3k9c_A 7 LRQASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRA-E-------------------KVAVQA-LMR 64 (289)
T ss_dssp ------CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBC-H-------------------HHHHHH-HTT
T ss_pred hhcCCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-H-------------------HHHHHH-HHh
Confidence 3333456788887 43222223556677778888999999887543321 0 000111 234
Q ss_pred cCCCEEEEcccch-hhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcC
Q 011954 149 LNADLVVLNTAVA-GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGI 227 (474)
Q Consensus 149 ~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (474)
.++|-|++..... ...+..+ . . ..|++..-..... .....+..+.........+.+.+ .
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~~-~----~-~iPvV~i~~~~~~-----------~~~~~V~~D~~~~~~~a~~~L~~-~-- 124 (289)
T 3k9c_A 65 ERCEAAILLGTRFDTDELGAL-A----D-RVPALVVARASGL-----------PGVGAVRGDDVAGITLAVDHLTE-L-- 124 (289)
T ss_dssp TTEEEEEEETCCCCHHHHHHH-H----T-TSCEEEESSCCSS-----------TTSEEEEECHHHHHHHHHHHHHH-T--
T ss_pred CCCCEEEEECCCCCHHHHHHH-H----c-CCCEEEEcCCCCC-----------CCCCEEEeChHHHHHHHHHHHHH-C--
Confidence 5788777654322 2222221 1 1 2355543222110 11122222222223333333332 2
Q ss_pred CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC
Q 011954 228 RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307 (474)
Q Consensus 228 ~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (474)
...++-++....+. . ... +...-.+..++.|++.+. .+ ..+.... +...+++.++.+ .++
T Consensus 125 G~~~I~~i~~~~~~--~--~~~---R~~Gf~~al~~~g~~~~~-~~-~~~~~~~----~~~~~~~~~~l~-------~~~ 184 (289)
T 3k9c_A 125 GHRNIAHIDGADAP--G--GAD---RRAGFLAAMDRHGLSASA-TV-VTGGTTE----TEGAEGMHTLLE-------MPT 184 (289)
T ss_dssp TCCSEEEECCTTST--T--HHH---HHHHHHHHHHHTTCGGGE-EE-ECCCSSH----HHHHHHHHHHHT-------SSS
T ss_pred CCCcEEEEeCCCCc--c--HHH---HHHHHHHHHHHCCCCCCc-cE-EECCCCH----HHHHHHHHHHHc-------CCC
Confidence 34567666543322 1 000 100012223345654333 22 3344433 334444555443 346
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKT 347 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~ 347 (474)
+...+++.++. ....+.+.+++.|+. +.|.+.|+.
T Consensus 185 ~~~ai~~~~d~-----~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 185 PPTAVVAFNDR-----CATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp CCSEEEESSHH-----HHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCEEEECChH-----HHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 67778887752 444566777777764 788888864
No 408
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=40.70 E-value=44 Score=28.85 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=29.2
Q ss_pred ccCEEEEEecCC-CCCChh-HHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHEL-SLSGGP-LLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~-~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
|++||+++.... .+.|.+ .-+..-...|++.|++|.++++..+
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g 66 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKN 66 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSB
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 457899987531 224554 3455667888999999999997654
No 409
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=40.58 E-value=47 Score=28.85 Aligned_cols=24 Identities=8% Similarity=-0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
-.=..+++.|.+.|++|.++....
T Consensus 14 ~IG~~la~~L~~~G~~V~~~~r~~ 37 (267)
T 3rft_A 14 QLGRVMRERLAPMAEILRLADLSP 37 (267)
T ss_dssp HHHHHHHHHTGGGEEEEEEEESSC
T ss_pred HHHHHHHHHHHhcCCEEEEEecCC
Confidence 345567888999999999888543
No 410
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=40.49 E-value=30 Score=26.39 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=25.0
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcC-cEEEEEeC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-AEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~ 112 (474)
...+|+++.... .....+...|.+.| ++|.....
T Consensus 19 ~~~~ilivdd~~------~~~~~l~~~L~~~g~~~v~~~~~ 53 (146)
T 4dad_A 19 GMINILVASEDA------SRLAHLARLVGDAGRYRVTRTVG 53 (146)
T ss_dssp GGCEEEEECSCH------HHHHHHHHHHHHHCSCEEEEECC
T ss_pred CCCeEEEEeCCH------HHHHHHHHHHhhCCCeEEEEeCC
Confidence 367899998643 45667778888888 98887553
No 411
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=40.49 E-value=71 Score=29.12 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=25.1
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHh--cCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG--VGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~--~G~~V~v~~~~~ 114 (474)
++|+||+.. |..-.=..+++.|.+ .|++|.++....
T Consensus 9 ~~~~vlVTG------atG~IG~~l~~~L~~~~~g~~V~~~~r~~ 46 (362)
T 3sxp_A 9 ENQTILITG------GAGFVGSNLAFHFQENHPKAKVVVLDKFR 46 (362)
T ss_dssp TTCEEEEET------TTSHHHHHHHHHHHHHCTTSEEEEEECCC
T ss_pred CCCEEEEEC------CCCHHHHHHHHHHHhhCCCCeEEEEECCC
Confidence 356777653 333456677888888 899999998543
No 412
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.48 E-value=1.3e+02 Score=26.25 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=29.6
Q ss_pred CEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHc
Q 011954 270 DLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEK 335 (474)
Q Consensus 270 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~ 335 (474)
..+|++++.-.. -.-..++++++++.+ .++.+.++|-|.... ..+.++.+++..
T Consensus 108 ~rIIlf~ds~~~-~~~~~l~~lak~lkk---------~gI~v~vIgFG~~~~--n~~kLe~l~~~~ 161 (268)
T 4b4t_W 108 QRIVAFVCSPIS-DSRDELIRLAKTLKK---------NNVAVDIINFGEIEQ--NTELLDEFIAAV 161 (268)
T ss_dssp EEEEEEECSCCS-SCHHHHHHHHHHHHH---------HTEEEEEEEESSCCS--SCCHHHHHHHHH
T ss_pred eEEEEEECCCCC-CCHHHHHHHHHHHHH---------cCCEEEEEEeCCCcc--chHHHHHHHHHh
Confidence 345666654322 244566676766655 467777777653221 234566666654
No 413
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=40.43 E-value=2.1e+02 Score=27.18 Aligned_cols=145 Identities=8% Similarity=0.088 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEe-cccc--cCcchHHHHHHHHHHHHHHHHhccC
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAII-NSVS--RGKGQDLFLHSFYESLQLIREKKLQ 305 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v-grl~--~~Kg~~~ll~a~~~l~~~~~~~~~~ 305 (474)
.+++.+|.+..-.+..-.+-... -.++++++..+.+..++.+- ..+. ...|.+..++++.+ .+.+.. .
T Consensus 96 ~P~~I~V~tTC~~e~IGdDi~~v-----~~~~~~~~~~~~~~pvi~v~tpgf~gs~~~G~~~a~~al~~---~l~~~~-~ 166 (458)
T 1mio_B 96 NPDIIAVHTTCLSETLGDDLPTY-----ISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIVN---YLSENT-G 166 (458)
T ss_dssp CCSEEEEEECHHHHHHTCCHHHH-----HHHHHHTTCSCTTCEEEEECCCTTSSCHHHHHHHHHHHHHH---HHCCCC-S
T ss_pred CCCEEEEECCcHHHHHhcCHHHH-----HHHHHHhcCCCCCCeEEEEECCCCcccHHHHHHHHHHHHHH---HHcccc-C
Confidence 45566666554444433222221 24455655444344444322 2222 24566666666543 222100 1
Q ss_pred CCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE-----------------EEe-cCCCChHHHHh--cCCEEEEcCC
Q 011954 306 VPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV-----------------HFV-NKTLTVSPYLA--SIDVLVQNSQ 365 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v-----------------~~~-g~~~~~~~~~~--~adv~v~ps~ 365 (474)
..+-.+-|+|+.. .+....+++++.+++|+.-++ .+. |. ..+.++-+ .|++-+..+.
T Consensus 167 ~~~~~VNilg~~~--~~~d~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~ei~~~~~A~~niv~~~ 243 (458)
T 1mio_B 167 AKNGKINVIPGFV--GPADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIEDLKDTGNSDLTLSLGS 243 (458)
T ss_dssp CCCSCEEEECCSC--CHHHHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHHHHHTTSSCSEEEEESH
T ss_pred CCCCcEEEECCCC--CHHHHHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHHHHHhhccCCEEEEEch
Confidence 1233566777542 134568999999999995433 122 21 24555543 3444443332
Q ss_pred CCCCCCchHHHHHHh--cCCCEEEcC
Q 011954 366 ARGECFGRITIEAMA--FQLPVLGTA 389 (474)
Q Consensus 366 ~~~E~~~~~~~EAma--~G~PvI~s~ 389 (474)
..+..+.+.|. +|+|.+..+
T Consensus 244 ----~~~~~~A~~Le~~~GiP~~~~~ 265 (458)
T 1mio_B 244 ----YASDLGAKTLEKKCKVPFKTLR 265 (458)
T ss_dssp ----HHHHHHHHHHHHHSCCCEEEEC
T ss_pred ----hhHHHHHHHHHHHhCCCEEecC
Confidence 23577888887 799999875
No 414
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=40.41 E-value=78 Score=29.00 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=42.9
Q ss_pred CcccccccCEEEEEecCCCCCChhHHHHHHHHHHH-h-cCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHH
Q 011954 67 NPLNFMKSKLVLLVSHELSLSGGPLLLMELAFLLR-G-VGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKA 144 (474)
Q Consensus 67 ~~~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~-~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (474)
+....|+++||++|.. |. .-...+..|. + .|+++..++......... .....++....+.....
T Consensus 16 ~~~~~m~~~rvgiIG~----G~---~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~-------~a~~~g~~~~~~~~~~~ 81 (357)
T 3ec7_A 16 NLYFQGMTLKAGIVGI----GM---IGSDHLRRLANTVSGVEVVAVCDIVAGRAQA-------ALDKYAIEAKDYNDYHD 81 (357)
T ss_dssp ------CCEEEEEECC----SH---HHHHHHHHHHHTCTTEEEEEEECSSTTHHHH-------HHHHHTCCCEEESSHHH
T ss_pred ccccCCCeeeEEEECC----cH---HHHHHHHHHHhhCCCcEEEEEEeCCHHHHHH-------HHHHhCCCCeeeCCHHH
Confidence 4455577889999985 32 2234556665 3 478887776554321111 11112321222344566
Q ss_pred HhhhcCCCEEEEcccchh
Q 011954 145 INTALNADLVVLNTAVAG 162 (474)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~ 162 (474)
+....++|+|++.++...
T Consensus 82 ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 82 LINDKDVEVVIITASNEA 99 (357)
T ss_dssp HHHCTTCCEEEECSCGGG
T ss_pred HhcCCCCCEEEEcCCcHH
Confidence 666678999999886543
No 415
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=40.35 E-value=43 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=23.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 5 ~k~vlVT-----Gas~gIG~~~a~~l~~~G~~V~~~~r~ 38 (281)
T 3m1a_A 5 AKVWLVT-----GASSGFGRAIAEAAVAAGDTVIGTARR 38 (281)
T ss_dssp CCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555565 233345567888899999999888754
No 416
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=40.27 E-value=30 Score=31.65 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=23.2
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|++|||+++.. | ..=..++..|.+.|++|+++..
T Consensus 2 m~~mki~iiG~----G---~~G~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 2 IESKTYAVLGL----G---NGGHAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp --CCEEEEECC----S---HHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcCeEEEECC----C---HHHHHHHHHHHhCCCEEEEEeC
Confidence 56689999863 2 2344567778889999988753
No 417
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=40.14 E-value=1.8e+02 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCC
Q 011954 306 VPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKT 347 (474)
Q Consensus 306 ~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (474)
+++...+++.++. ....+.+.+++.|+.+.|.+.|+.
T Consensus 188 ~~~~~ai~~~~d~-----~a~g~~~al~~~G~~~di~vvg~d 224 (289)
T 3brs_A 188 YPDISVMVGLNQY-----SATGAARAIKDMSLEAKVKLVCID 224 (289)
T ss_dssp CTTEEEEEESSHH-----HHHHHHHHHHHTTCTTTSEEEEEE
T ss_pred CCCceEEEECCCc-----chHHHHHHHHhcCCCCCEEEEEEC
Confidence 3678888887652 445566777888887668888864
No 418
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.10 E-value=1.8e+02 Score=25.12 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=27.4
Q ss_pred ccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 69 LNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++..+..+|.++.+.....-....+..+.+++.+.|+++.+....
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 59 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE 59 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 443456789999875432111245556667778899999887643
No 419
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=40.04 E-value=34 Score=26.37 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=20.7
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVW 109 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v 109 (474)
|.+++|+++.... .....+...|.+. |+.+..
T Consensus 1 M~~~~iLivdd~~------~~~~~l~~~L~~~~g~~~v~ 33 (154)
T 2qsj_A 1 MSLTVVLIVDDHH------LIRAGAKNLLEGAFSGMRVE 33 (154)
T ss_dssp --CEEEEEECSCH------HHHHHHHHHHHHHCTTEEEE
T ss_pred CCccEEEEEcCCH------HHHHHHHHHHHhCCCceEEE
Confidence 4567899998642 4566677778777 874433
No 420
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=39.95 E-value=1.3e+02 Score=25.65 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 91 LLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
..=..+++++.++|++|++++...
T Consensus 30 ~mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 30 HLGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 355678999999999999998643
No 421
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=39.76 E-value=93 Score=27.88 Aligned_cols=77 Identities=14% Similarity=0.031 Sum_probs=40.1
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhh-hhhcccchhccceeeeehh-----cHHHHhhh
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEV-IYSLEHKMLDRGVQVLSAK-----GEKAINTA 148 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 148 (474)
|||+|+.. +.+...-.++|.+.||+|..+..+.+...... ...........+++++... ......+.
T Consensus 1 mrivf~gt-------~~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~ 73 (305)
T 2bln_A 1 MKTVVFAY-------HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (305)
T ss_dssp CEEEEEEC-------HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH
T ss_pred CEEEEEEc-------CHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHh
Confidence 57877764 23444455667677999876554433211100 0112223344566654332 23345567
Q ss_pred cCCCEEEEcc
Q 011954 149 LNADLVVLNT 158 (474)
Q Consensus 149 ~~~DiV~~~~ 158 (474)
.++|++++-.
T Consensus 74 ~~~Dliv~~~ 83 (305)
T 2bln_A 74 LSPDVIFSFY 83 (305)
T ss_dssp TCCSEEEEES
T ss_pred cCCCEEEEec
Confidence 8999998864
No 422
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=39.75 E-value=57 Score=29.85 Aligned_cols=33 Identities=27% Similarity=0.076 Sum_probs=22.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+|++.. |....=..+++.|.+.|++|.++...
T Consensus 2 ~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~ 34 (372)
T 1db3_A 2 KVALITG------VTGQDGSYLAEFLLEKGYEVHGIKRR 34 (372)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred CEEEEEC------CCChHHHHHHHHHHHCCCEEEEEECC
Confidence 5565543 33345567788888899999988754
No 423
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=39.70 E-value=2.1e+02 Score=25.62 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=76.4
Q ss_pred EEEecccccCcchHHHHHHHHHHHHHHHHhccCCC-cEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecCCCCh
Q 011954 273 FAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP-SMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKTLTV 350 (474)
Q Consensus 273 i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~ 350 (474)
++.+..-.+.|.++.|++.++ ++| .+.+-..|.|. ...-..+.+.+..|+. ..|.|.|..+-+
T Consensus 118 ~lvv~~ds~~~tl~dL~~~ak-----------~~p~~~~~g~~g~Gs----~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~ 182 (314)
T 2dvz_A 118 VVAVNPKFPAKDFKGFLEELK-----------KNPGKYSYGSSGTCG----VLHLMGESFKMATGTDIVHVPYKGSGPAV 182 (314)
T ss_dssp EEEECTTSSCSSHHHHHHHHH-----------TSTTTCEEEESCTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-----------hCCCcEEEeCCCCCc----HHHHHHHHHHHHhCCCeEEcccCCHHHHH
Confidence 445555567888888887664 224 35555544342 1222233444566664 234555544556
Q ss_pred HHHHh-cCCEEEEcCCCCCCCCchHHHHHHhcCCC-EEEc----------CCC-----CcceeeeeCCceeeecCCCC--
Q 011954 351 SPYLA-SIDVLVQNSQARGECFGRITIEAMAFQLP-VLGT----------AAG-----GTMEIVVNGTTGLLHPTGKE-- 411 (474)
Q Consensus 351 ~~~~~-~adv~v~ps~~~~E~~~~~~~EAma~G~P-vI~s----------~~~-----g~~e~v~~~~~G~l~~~~d~-- 411 (474)
.+++. ..|+.+.... .+.+....|.- +|+. +++ |.+++....-.|++++.+.+
T Consensus 183 ~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~ 254 (314)
T 2dvz_A 183 ADAVGGQIELIFDNLP--------SSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMD 254 (314)
T ss_dssp HHHHHTSSSEEEEEHH--------HHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHH
T ss_pred HHHHcCCceEEEEcHH--------HHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHH
Confidence 66664 5788775431 34555666643 2321 222 12111112236888888751
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGY 438 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~ 438 (474)
-++.|.+++.+++.+++..+.+.+.+.
T Consensus 255 vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 255 VVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 023556666666779988887766543
No 424
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=39.61 E-value=1.1e+02 Score=25.03 Aligned_cols=110 Identities=9% Similarity=0.058 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE-EEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc---
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV-HFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF--- 381 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~--- 381 (474)
..+++|+.+.+ .....+....+..+- -.+ ......++....+. ..|++++-..- .+.-|+.+++.+..
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~ 78 (215)
T 1a04_A 5 PATILLIDDHP----MLRTGVKQLISMAPD-ITVVGEASNGEQGIELAESLDPDLILLDLNM-PGMNGLETLDKLREKSL 78 (215)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHHHHCCSEEEEETTS-TTSCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCH----HHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 45677777653 244455555544321 122 22222223333332 35887764331 33456667766543
Q ss_pred CCCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhh
Q 011954 382 QLPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLAT 425 (474)
Q Consensus 382 G~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (474)
..|+|.- ..... .+.+..|..|++..|-+ +++|..+|..++.
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (215)
T 1a04_A 79 SGRIVVFSVSNHEEDVVTALKRGADGYLLKDME--PEDLLKALHQAAA 124 (215)
T ss_dssp CSEEEEEECCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHc
Confidence 4666543 33222 22344577899999988 9999999998876
No 425
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=39.23 E-value=34 Score=30.89 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=28.6
Q ss_pred CEEEEEecCCCCCChh--HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
-||.-|+ +.||+. +...+|+.+|++.|+.|.++-.+
T Consensus 48 aKVIAIa---GKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 48 AKVFAVY---GKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp CEEEEEE---CSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred ceEEEEE---CCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3555554 478886 77899999999999999999754
No 426
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=39.19 E-value=36 Score=32.48 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=25.3
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|++|||++.. | .....+++++++.|++|.++..
T Consensus 1 m~k~ilI~g~-----g--~~~~~~~~a~~~~G~~vv~v~~ 33 (449)
T 2w70_A 1 MLDKIVIANR-----G--EIALRILRACKELGIKTVAVHS 33 (449)
T ss_dssp CCSEEEECCC-----H--HHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCceEEEeCC-----c--HHHHHHHHHHHHcCCeEEEEec
Confidence 3568888762 2 3566899999999999998864
No 427
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.11 E-value=2e+02 Score=25.15 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=103.3
Q ss_pred ccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhh
Q 011954 69 LNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTA 148 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (474)
++..+...|.++.+.....-....+..+.+++.+.|+++.++....+.... .........
T Consensus 10 L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--------------------~~~~~~l~~ 69 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGT--------------------QQLSRLVSE 69 (303)
T ss_dssp -------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHH--------------------HHHHHHHHS
T ss_pred HhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHH--------------------HHHHHHHHh
Confidence 333345679999887543333466777888888999999988755432100 001122334
Q ss_pred cCCCEEEEcccchhh--HHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhc
Q 011954 149 LNADLVVLNTAVAGK--WLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLG 226 (474)
Q Consensus 149 ~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (474)
.++|-|++....... .+..+.. ..|+|..-..... ....+..+.........+.+.+ .
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~~------~iPvV~i~~~~~~------------~~~~V~~D~~~~g~~a~~~L~~-~- 129 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVLE------GVPAVTINSRVPG------------RVGSVILDDQKGGGIATEHLIT-L- 129 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHHT------TSCEEEESCCCTT------------CCCEEEECHHHHHHHHHHHHHH-T-
T ss_pred CCCcEEEEecCCCCcHHHHHHHhC------CCCEEEECCcCCC------------CCCEEEECcHHHHHHHHHHHHH-C-
Confidence 688988876432221 2222222 2355543322210 1122222222223333333332 2
Q ss_pred CCCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHH-----HHHHHH
Q 011954 227 IRMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYES-----LQLIRE 301 (474)
Q Consensus 227 ~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l-----~~~~~~ 301 (474)
...++-++....+...... +...-.+.-++.|++.+...+ ..+......+ .+++.++ .+
T Consensus 130 -G~~~I~~i~~~~~~~~~~~------R~~Gf~~al~~~g~~~~~~~~-~~~~~~~~~~----~~~~~~l~~~~~l~---- 193 (303)
T 3kke_A 130 -GHSRIAFISGTAIHDTAQR------RKEGYLETLASAGLRSEAAWV-VDAGWEADAG----SAALNTLYRGANLG---- 193 (303)
T ss_dssp -TCCSEEEEESCSSCHHHHH------HHHHHHHHHHHTTCCCCGGGE-EECCSSHHHH----HHHHHHHHHHHCTT----
T ss_pred -CCCeEEEEeCCCcCccHHH------HHHHHHHHHHHcCCCCCcceE-EecCCChHHH----HHHHHHhcchhhhc----
Confidence 3457777754332111100 000011223445665443222 3344443333 3444444 32
Q ss_pred hccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCCCC
Q 011954 302 KKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKTLT 349 (474)
Q Consensus 302 ~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~~ 349 (474)
++++...+++.++. ....+.+.+++.|+. +.|.+.|+...
T Consensus 194 ---~~~~~~ai~~~nd~-----~A~g~~~al~~~G~~vP~di~vig~D~~ 235 (303)
T 3kke_A 194 ---KPDGPTAVVVASVN-----AAVGALSTALRLGLRVPEDLSIVGINTT 235 (303)
T ss_dssp ---STTSCSEEEESSHH-----HHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred ---CCCCCcEEEECCHH-----HHHHHHHHHHHcCCCCCCceEEEEEcCh
Confidence 34667778887752 444566777888764 78999997533
No 428
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=39.01 E-value=1.8e+02 Score=24.82 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
..+|.++.+.....-....+..+.+++.+.|+++.++....
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56799998865332223566677788888999999987553
No 429
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=38.91 E-value=40 Score=30.93 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=42.9
Q ss_pred ccccCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhc
Q 011954 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTAL 149 (474)
Q Consensus 71 ~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (474)
.|+++||++|.. |+... ..++..|.+. |+++..++...... . .......++..+ .....+....
T Consensus 24 ~m~~~rigiIG~----G~~g~--~~~~~~l~~~~~~~l~av~d~~~~~----~---~~~a~~~g~~~~--~~~~~ll~~~ 88 (350)
T 3rc1_A 24 NANPIRVGVIGC----ADIAW--RRALPALEAEPLTEVTAIASRRWDR----A---KRFTERFGGEPV--EGYPALLERD 88 (350)
T ss_dssp --CCEEEEEESC----CHHHH--HTHHHHHHHCTTEEEEEEEESSHHH----H---HHHHHHHCSEEE--ESHHHHHTCT
T ss_pred CCCceEEEEEcC----cHHHH--HHHHHHHHhCCCeEEEEEEcCCHHH----H---HHHHHHcCCCCc--CCHHHHhcCC
Confidence 356789999975 32222 1355666665 78887666432211 1 111122244443 4456666667
Q ss_pred CCCEEEEcccchhh
Q 011954 150 NADLVVLNTAVAGK 163 (474)
Q Consensus 150 ~~DiV~~~~~~~~~ 163 (474)
++|+|++.++....
T Consensus 89 ~~D~V~i~tp~~~h 102 (350)
T 3rc1_A 89 DVDAVYVPLPAVLH 102 (350)
T ss_dssp TCSEEEECCCGGGH
T ss_pred CCCEEEECCCcHHH
Confidence 89999998765433
No 430
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=38.90 E-value=1e+02 Score=27.93 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+. ..+..++.+++++.. . ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 25 ~~~~l~av~d~------~~~~~~~~~~~~~~~-~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 90 (344)
T 3ezy_A 25 DDAILYAISDV------REDRLREMKEKLGVE-K-----AYKDPHELIEDPNVDAVLVCSS--TNTHSELVIACAKAKKH 90 (344)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCS-E-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC-c-----eeCCHHHHhcCCCCCEEEEcCC--CcchHHHHHHHHhcCCe
Confidence 77888755443 345667777777652 1 1357788888 7899998876 33334456789999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 91 v~~EK 95 (344)
T 3ezy_A 91 VFCEK 95 (344)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 98764
No 431
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=38.80 E-value=33 Score=30.85 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=28.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|+||+++..... +.+...+.++.+.|.++|++|.+...
T Consensus 4 m~ki~iI~n~~~-~~~~~~~~~l~~~L~~~g~~v~~~~~ 41 (307)
T 1u0t_A 4 HRSVLLVVHTGR-DEATETARRVEKVLGDNKIALRVLSA 41 (307)
T ss_dssp -CEEEEEESSSG-GGGSHHHHHHHHHHHTTTCEEEEEC-
T ss_pred CCEEEEEEeCCC-HHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 568999887544 33456789999999999999887653
No 432
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=38.73 E-value=2e+02 Score=25.19 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCCh--HHHHhc--CCEEE
Q 011954 286 DLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTV--SPYLAS--IDVLV 361 (474)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~--~~~~~~--adv~v 361 (474)
+...+++.++.+ +++++..+++.++. ....+.+.+++.|+++.|.+.|+.... .+++.. ....|
T Consensus 167 ~~~~~~~~~~l~-------~~~~~~ai~~~~d~-----~a~g~~~al~~~G~p~dv~vvg~d~~~~~~~~~~~g~~lttv 234 (313)
T 2h3h_A 167 ARAVSLAEAALN-------AHPDLDAFFGVYAY-----NGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATM 234 (313)
T ss_dssp HHHHHHHHHHHH-------HCTTCCEEEECSTT-----HHHHHHHHHHHTTCTTTSEEEEECCCHHHHHHHHHTSCSEEE
T ss_pred HHHHHHHHHHHH-------HCcCceEEEEcCCC-----ccHHHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHcCCeEEEE
Confidence 334445555444 23667778887653 555666777888888889999976333 345542 23344
Q ss_pred EcCCCCCCCCchHHHHH
Q 011954 362 QNSQARGECFGRITIEA 378 (474)
Q Consensus 362 ~ps~~~~E~~~~~~~EA 378 (474)
... .+..|...++.
T Consensus 235 ~~~---~~~~g~~av~~ 248 (313)
T 2h3h_A 235 GQR---PYMMGYLSVTV 248 (313)
T ss_dssp ECC---HHHHHHHHHHH
T ss_pred ecC---HHHHHHHHHHH
Confidence 332 33455444443
No 433
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=38.66 E-value=36 Score=29.21 Aligned_cols=33 Identities=27% Similarity=0.185 Sum_probs=24.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEE
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWI 110 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 110 (474)
+.+++|+++..+. .....+...|.+.|++|...
T Consensus 21 ~~~~~ILivdd~~------~~~~~l~~~L~~~g~~v~~~ 53 (250)
T 3r0j_A 21 TPEARVLVVDDEA------NIVELLSVSLKFQGFEVYTA 53 (250)
T ss_dssp CSSCEEEEECSCH------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEEECCH------HHHHHHHHHHHHCCCEEEEE
Confidence 3468999998743 45666777888899998744
No 434
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=38.57 E-value=69 Score=24.38 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=24.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+++|+++.. | ..-..+++.|.+.|++|.++...
T Consensus 6 ~~~v~I~G~-----G--~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGS-----E--AAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECC-----S--HHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECC-----C--HHHHHHHHHHHHCCCeEEEEECC
Confidence 456777652 2 46678899999999999998753
No 435
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=38.55 E-value=56 Score=29.51 Aligned_cols=42 Identities=14% Similarity=-0.072 Sum_probs=28.4
Q ss_pred ChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCC
Q 011954 349 TVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGG 392 (474)
Q Consensus 349 ~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g 392 (474)
++.+++..+|+++..+. ...---.+..++..|++||++...+
T Consensus 51 d~~~ll~~~DvViiatp--~~~h~~~~~~al~aG~~Vv~ekp~~ 92 (320)
T 1f06_A 51 DVDKHADDVDVLFLCMG--SATDIPEQAPKFAQFACTVDTYDNH 92 (320)
T ss_dssp GGGGTTTTCSEEEECSC--TTTHHHHHHHHHTTTSEEECCCCCG
T ss_pred CHHHHhcCCCEEEEcCC--cHHHHHHHHHHHHCCCEEEECCCCc
Confidence 34445578999998775 2222234568899999999986544
No 436
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=38.53 E-value=41 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=23.7
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 114 (474)
+|+|++.. |....=..+++.|.+. |++|.++....
T Consensus 2 ~~~vlVtG------atG~iG~~l~~~L~~~~~g~~V~~~~r~~ 38 (312)
T 2yy7_A 2 NPKILIIG------ACGQIGTELTQKLRKLYGTENVIASDIRK 38 (312)
T ss_dssp CCCEEEET------TTSHHHHHHHHHHHHHHCGGGEEEEESCC
T ss_pred CceEEEEC------CccHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 46777653 2234556677788887 89999998543
No 437
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=38.44 E-value=70 Score=29.46 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=30.2
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
.++|+++..- -.+++..++.++...|.+|.++++..-
T Consensus 181 gl~ia~vGD~-----~~~va~S~~~~~~~~g~~v~~~~P~~~ 217 (358)
T 4h31_A 181 DIQFAYLGDA-----RNNVGNSLMVGAAKMGMDIRLVGPQAY 217 (358)
T ss_dssp GCEEEEESCT-----TSHHHHHHHHHHHHHTCEEEEESCGGG
T ss_pred ceEEEecCCC-----CcccchHHHHHHHhcCceEEEeCCccc
Confidence 5789988862 137999999999999999999997643
No 438
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=38.32 E-value=36 Score=26.22 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=23.1
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHh-cCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRG-VGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~ 111 (474)
.+++|+++.... .....+...|.+ .|++|...+
T Consensus 4 ~~~~ILivdd~~------~~~~~l~~~L~~~~~~~v~~~~ 37 (153)
T 3cz5_A 4 STARIMLVDDHP------IVREGYRRLIERRPGYAVVAEA 37 (153)
T ss_dssp CCEEEEEECSCH------HHHHHHHHHHTTSTTEEEEEEE
T ss_pred cccEEEEECCcH------HHHHHHHHHHhhCCCcEEEEEe
Confidence 467899998743 456667777877 788877443
No 439
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=38.30 E-value=53 Score=27.32 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=26.7
Q ss_pred CEEEEEecCCC----CCChh-HHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELS----LSGGP-LLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~----~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
-|||+|..... .++.. ..+..+++.+.+.|++|.++...
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~ 56 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRAD 56 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47999887655 33443 45556677777789999999865
No 440
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=38.17 E-value=2.9e+02 Score=26.91 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=79.1
Q ss_pred CCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEeccccc---CcchHHHHHHHHHHHHHHHHhc-c
Q 011954 229 MPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSR---GKGQDLFLHSFYESLQLIREKK-L 304 (474)
Q Consensus 229 ~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~---~Kg~~~ll~a~~~l~~~~~~~~-~ 304 (474)
.+++.+|....-.+..-.+-... -.+++++++++ ++.+....+.. ..|.+..++++.+.. .+.. .
T Consensus 134 ~P~~I~V~tTC~~eiIGdDi~~v-----~~~~~~~~~~p---Vi~v~tpGf~g~s~~~G~~~a~~al~~~~---~~~~~~ 202 (533)
T 1mio_A 134 HPAAIGVYATCPVGLIGDDILAV-----AATASKEIGIP---VHAFSCEGYKGVSQSAGHHIANNTVMTDI---IGKGNK 202 (533)
T ss_dssp CCSEEEECCCHHHHHHTCCHHHH-----HHHHHHHHSSC---EEECCCCTTSSSSTHHHHHHHHHHHHHHT---TBCCCC
T ss_pred CCCEEEEEcCCHHHHhcCCHHHH-----HHHHHHhhCCc---EEEEeCCCCcCcchhHHHHHHHHHHHHHh---cccccC
Confidence 34677777665555443333222 23344445432 22222222322 257888777765432 1100 0
Q ss_pred CCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHH--hcCCEEEEcCCCCCCCCchHHHHHHh--
Q 011954 305 QVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYL--ASIDVLVQNSQARGECFGRITIEAMA-- 380 (474)
Q Consensus 305 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~--~~adv~v~ps~~~~E~~~~~~~EAma-- 380 (474)
...+-.+.|+|.... +....+++++.+++|+.-+..+.|.. .+.++- ..|++-+..+. ..+..+.+.|.
T Consensus 203 ~~~~~~VNIlG~~~~--~gD~~eikrlL~~~Gi~v~~~~~gg~-t~~ei~~~~~A~~niv~~~----~~~~~~A~~Leer 275 (533)
T 1mio_A 203 EQKKYSINVLGEYNI--GGDAWEMDRVLEKIGYHVNATLTGDA-TYEKVQNADKADLNLVQCH----RSINYIAEMMETK 275 (533)
T ss_dssp CCCTTEEEEEEECCB--TSHHHHHHHHHHHHTCEEEEEEETTC-CHHHHHBTTSCSEEEESCH----HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCC--hhhHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHhhhcCCEEEEECH----HHHHHHHHHHHHH
Confidence 011346778886321 23568999999999998777787653 344443 44555555442 14567788885
Q ss_pred cCCCEEEcC
Q 011954 381 FQLPVLGTA 389 (474)
Q Consensus 381 ~G~PvI~s~ 389 (474)
+|+|.+..+
T Consensus 276 ~GiP~i~~~ 284 (533)
T 1mio_A 276 YGIPWIKCN 284 (533)
T ss_dssp HCCCEEECC
T ss_pred hCCCeEEec
Confidence 799999864
No 441
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=38.07 E-value=19 Score=28.97 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=24.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
||||+++.. ...|..+.++..+++.|.+.|++|.++.
T Consensus 9 ~~ki~I~Y~-S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 45 (167)
T 1ykg_A 9 MPGITIISA-SQTGNARRVAEALRDDLLAAKLNVKLVN 45 (167)
T ss_dssp ---CEEEEE-CSSSHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEEEEE-CCchHHHHHHHHHHHHHHHCCCceEEee
Confidence 446666542 1225557889999999999999888765
No 442
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=38.04 E-value=2.1e+02 Score=25.40 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=72.1
Q ss_pred EEEecccccCcchHHHHHHHHHHHHHHHHhccCCC-cEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecCCCCh
Q 011954 273 FAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP-SMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKTLTV 350 (474)
Q Consensus 273 i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~~ 350 (474)
++.+..-.+.|.++.|+++++ ++| .+.+-..|.|. ...-..+.+.+..|+. ..|.|.|..+-+
T Consensus 105 ~lvv~~~s~~~sl~dL~~~ak-----------~~p~~~~~g~~g~Gs----~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~ 169 (301)
T 2qpq_A 105 VFVVPAGSKYKTLGELMAAAK-----------QTNTQVTYGSCGNGT----PQHLAGELLNVSAKTHMVHVPYKGCGPAL 169 (301)
T ss_dssp EEEEETTCSCCSHHHHHHHTC-----------SSSCCCEEEESSTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-----------hCCCceEEecCCCCc----HHHHHHHHHHHHhCCCeEEeccCChHHHH
Confidence 344555567788887777653 223 24444444332 1122223344455653 234455544445
Q ss_pred HHHHh-cCCEEEEcCCCCCCCCchHHHHHHhcCCC-EEEc----------CCCC-----cceeeeeCCceeeecCCCC--
Q 011954 351 SPYLA-SIDVLVQNSQARGECFGRITIEAMAFQLP-VLGT----------AAGG-----TMEIVVNGTTGLLHPTGKE-- 411 (474)
Q Consensus 351 ~~~~~-~adv~v~ps~~~~E~~~~~~~EAma~G~P-vI~s----------~~~g-----~~e~v~~~~~G~l~~~~d~-- 411 (474)
.+++. ..|+.+.... .+.+.+..|.- +|+. +++- .+.+....-.|++++.+-+
T Consensus 170 ~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~ 241 (301)
T 2qpq_A 170 NDVLGSQIGLAVVTAS--------SAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMA 241 (301)
T ss_dssp HHHHTTSSSCEEEEHH--------HHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHH
T ss_pred HHHHCCCccEEEEcHH--------HHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHH
Confidence 55553 4677765421 34455555642 2221 1111 1111112236888887751
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 011954 412 GVTPLANNIVKLATHVERRLTMGKKGY 438 (474)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~~~ 438 (474)
-++.|.+++.+++.+++..+.+.+.+.
T Consensus 242 vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 242 VRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 034566667777778988887766543
No 443
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=38.03 E-value=26 Score=28.98 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=28.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
+|+|+++.. ...|..+.++..+++.|.+.|++|.++..
T Consensus 21 ~~kv~IvY~-S~tGnTe~~A~~ia~~l~~~g~~v~v~~l 58 (191)
T 1bvy_F 21 NTPLLVLYG-SNMGTAEGTARDLADIAMSKGFAPQVATL 58 (191)
T ss_dssp CCCEEEEEE-CSSSHHHHHHHHHHHHHHTTTCCCEEEEG
T ss_pred CCeEEEEEE-CCChHHHHHHHHHHHHHHhCCCceEEeeH
Confidence 466776653 23355578999999999999999888653
No 444
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=37.95 E-value=35 Score=28.64 Aligned_cols=38 Identities=26% Similarity=0.181 Sum_probs=26.0
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHh-cCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRG-VGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~-~G~~V~v~~~~~ 114 (474)
+++||++... ||. .....++++.|.+ .|++|+++....
T Consensus 18 ~~k~IllgvT----Gsiaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 18 RKFHVLVGVT----GSVAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp SSEEEEEEEC----SSGGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred CCCEEEEEEe----ChHHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 3567877765 333 2456899999998 899999998654
No 445
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=37.90 E-value=84 Score=26.34 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=40.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh------------
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK------------ 140 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (474)
|||+++.+. ....+..|+.++++. +++|..+..+.+.... .......+++++...
T Consensus 1 ~riaVl~SG-----~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~------~~~A~~~gIp~~~~~~~~~~~r~~~~~ 69 (209)
T 1meo_A 1 ARVAVLISG-----TGSNLQALIDSTREPNSSAQIDIVISNKAAVAG------LDKAERAGIPTRVINHKLYKNRVEFDS 69 (209)
T ss_dssp CEEEEEESS-----SCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHH------HHHHHHTTCCEEECCGGGSSSHHHHHH
T ss_pred CeEEEEEEC-----CchHHHHHHHHHhcCCCCcEEEEEEeCCCChHH------HHHHHHcCCCEEEECccccCchhhhhH
Confidence 467777652 224566677766553 6888765544332211 122345566654211
Q ss_pred cHHHHhhhcCCCEEEEcc
Q 011954 141 GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~ 158 (474)
......+..++|+|++-.
T Consensus 70 ~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 70 AIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 123445568999998864
No 446
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=37.81 E-value=36 Score=32.68 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=28.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc--CcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~ 114 (474)
+++|+++. ++..|--.=+.+|++.|.++ ||+|++++...
T Consensus 9 ~~~vv~~p--~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 9 NSELIFIP--APGIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp CEEEEEEC--CSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCEEEEEc--CcccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 45787775 33334346689999999998 99999998554
No 447
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=37.45 E-value=74 Score=29.25 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=31.1
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
..++|+++... ..+++..++.++...|.+|.++++..-.
T Consensus 175 ~gl~va~vGD~-----~~rva~Sl~~~~~~lG~~v~~~~P~~l~ 213 (359)
T 2w37_A 175 QGLTLTFMGDG-----RNNVANSLLVTGAILGVNIHIVAPKALF 213 (359)
T ss_dssp TTCEEEEESCT-----TSHHHHHHHHHHHHHTCEEEEECCGGGS
T ss_pred CCeEEEEECCC-----ccchHHHHHHHHHHcCCEEEEECCcccc
Confidence 35789998762 1389999999999999999999976543
No 448
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=37.42 E-value=43 Score=29.08 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=27.3
Q ss_pred cCEEEEEecCCCCCCh--hHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGG--PLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~--~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+++|+.+.. ..||. .....+|+.+|++.|+.|.++-..
T Consensus 17 ~~~vI~v~s--~kGGvGKTT~a~nLA~~la~~G~~VlliD~D 56 (262)
T 2ph1_A 17 IKSRIAVMS--GKGGVGKSTVTALLAVHYARQGKKVGILDAD 56 (262)
T ss_dssp CSCEEEEEC--SSSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEEc--CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345555553 23444 478999999999999999998754
No 449
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=37.41 E-value=1.8e+02 Score=25.11 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=62.0
Q ss_pred EEEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCC-cCchHHHHHHHHHHHcCCCCeEEEecCC---
Q 011954 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMN-AQTKFETELRNFVAEKKIQDHVHFVNKT--- 347 (474)
Q Consensus 272 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~-~~~~~~~~l~~~~~~~~l~~~v~~~g~~--- 347 (474)
.|+|+|-+.-+-|...+...+.++++ ++ | ++|+-.+.. ....+.....+...++|. .+.-+|+.
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~-------~~-d--~vi~ngen~~~G~g~~~~~~~~l~~~G~--D~~T~GNHefD 69 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRD-------RY-D--LVIANGENAARGKGLDRRSYRLLREAGV--DLVSLGNHAWD 69 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGG-------GC-S--EEEEECTTTTTTSSCCHHHHHHHHHHTC--CEEECCTTTTS
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHh-------hC-C--EEEEeCCCccCCCCcCHHHHHHHHhCCC--CEEEeccEeeE
Confidence 47889988887888877777776654 33 4 454443322 112244555666777886 46666842
Q ss_pred -CChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCc
Q 011954 348 -LTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGT 393 (474)
Q Consensus 348 -~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~ 393 (474)
.++.+++...+ .+.|... .++.| |.|...-..+|.
T Consensus 70 ~~~l~~~l~~~~-~vrpaN~-~~~~p---------g~~~~i~~~~G~ 105 (252)
T 2z06_A 70 HKEVYALLESEP-VVRPLNY-PPGTP---------GKGFWRLEVGGE 105 (252)
T ss_dssp CTTHHHHHHHSS-EECCTTS-CSSCS---------SCSEEEEEETTE
T ss_pred CchHHHHhccCC-ceEeecC-CCCCC---------CCCeEEEEECCE
Confidence 67889999999 7777762 23222 567655555665
No 450
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=37.36 E-value=5.2 Score=21.42 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEec
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVN 345 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (474)
+++-+.+|+.| +....+++.+++.++ +|.|.|
T Consensus 4 qvrtiwvggtp----eelkklkeeakkani--rvtfwg 35 (36)
T 2ki0_A 4 QVRTIWVGGTP----EELKKLKEEAKKANI--RVTFWG 35 (36)
T ss_dssp SCCCCCBCCCH----HHHHHHHHHHHHHCC--CCCBCC
T ss_pred eeEEEEecCCH----HHHHHHHHHHHhccE--EEEeec
Confidence 45556777765 456777778887765 566655
No 451
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=37.28 E-value=77 Score=28.66 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=30.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
..+||+++... .++++.++.++...|.+|.++++..-.
T Consensus 154 ~gl~va~vGD~------~~va~Sl~~~~~~~G~~v~~~~P~~~~ 191 (321)
T 1oth_A 154 KGLTLSWIGDG------NNILHSIMMSAAKFGMHLQAATPKGYE 191 (321)
T ss_dssp TTCEEEEESCS------SHHHHHHHTTTGGGTCEEEEECCTTCC
T ss_pred CCcEEEEECCc------hhhHHHHHHHHHHcCCeEEEECCcccc
Confidence 36789998762 268999999999999999999986543
No 452
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=37.02 E-value=1.1e+02 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=29.9
Q ss_pred cCEEEEEecCCC-----C-----CChh-HHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 74 SKLVLLVSHELS-----L-----SGGP-LLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 74 ~~kIl~v~~~~~-----~-----gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
.+|||++..... . .|.+ .-+......|++.|++|.+++..+..
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~~ 101 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLM 101 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCC
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 468999987632 1 1443 44556667888999999999976543
No 453
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=36.91 E-value=43 Score=28.01 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=17.5
Q ss_pred HHHHHHHHHHH-hcCcEEEEEeCC
Q 011954 91 LLLMELAFLLR-GVGAEVVWITNQ 113 (474)
Q Consensus 91 ~~~~~l~~~L~-~~G~~V~v~~~~ 113 (474)
..=..+++.|. +.|++|.++...
T Consensus 16 ~iG~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 16 QIAQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEESS
T ss_pred HHHHHHHHHHHhcCCceEEEEecC
Confidence 34567777888 799999998754
No 454
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=36.83 E-value=27 Score=32.55 Aligned_cols=39 Identities=15% Similarity=-0.005 Sum_probs=27.3
Q ss_pred cccCEEEEEecCCCCCChh-----HHHHHHHHHH-HhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGP-----LLLMELAFLL-RGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~-----~~~~~l~~~L-~~~G~~V~v~~~~ 113 (474)
|++|||+++....+ .| ....+++++| .+.||+|..+-..
T Consensus 1 m~k~~v~vl~gG~s---~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 1 MTKKRVALIFGGNS---SEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp --CEEEEEEEECSS---TTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CCCcEEEEEeCCCC---CCcceeHHHHHHHHHHhCcccCcEEEEEEEc
Confidence 45789999985321 12 2367888999 9999999988643
No 455
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=36.65 E-value=65 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=24.9
Q ss_pred cCEEEEEecCCCCCChh-HH--HHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGP-LL--LMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~-~~--~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|||+.++. -|.|.. .+ ...|-++-.++||++.|=+..
T Consensus 2 ~mkivaVta--CptGiAhTymAAeaLekaA~~~G~~ikVEtqg 42 (106)
T 2m1z_A 2 KRKIIAVTA--CATGVAHTYMAAQALKKGAKKMGNLIKVETQG 42 (106)
T ss_dssp CCEEEEEEE--CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred CccEEEEEE--CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 578888863 345553 22 335556667789999998843
No 456
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=36.49 E-value=77 Score=28.65 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=52.4
Q ss_pred HHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCCEEEcCCCCccee-eeeC-C-----ceeeecCCCCChHHHHHHHHHHh
Q 011954 352 PYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEI-VVNG-T-----TGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s~~~g~~e~-v~~~-~-----~G~l~~~~d~~~~~la~~i~~ll 424 (474)
.-++.||++|..... .|+|--.++++.. +.++|.... |+.-+ ..++ . -=+..++.. ...+++.|...|
T Consensus 90 ~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~L 164 (321)
T 1xvl_A 90 VKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTE-GIEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQAF 164 (321)
T ss_dssp HHHHTCSEEEECCTT-SSTTHHHHHHTSS-SCCEEETTT-TCCCCBCCSSSSTTSBCCCGGGSHHH--HHHHHHHHHHHH
T ss_pred HHHhcCCEEEECCCC-hHHHHHHHHHhcC-CCcEEEccC-CcccccccccCCCCCCCCCcCCCHHH--HHHHHHHHHHHH
Confidence 447889999987763 7888778888776 666665433 22111 0000 0 112333333 666777776666
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 011954 425 T--HVERRLTMGKKGYERVKD 443 (474)
Q Consensus 425 ~--~~~~~~~~~~~~~~~~~~ 443 (474)
. ||+......+|+.++..+
T Consensus 165 ~~~DP~~a~~Y~~Na~~~~~~ 185 (321)
T 1xvl_A 165 VELDPDNAKYYNANAAVYSEQ 185 (321)
T ss_dssp HHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHCcccHHHHHHHHHHHHHH
Confidence 5 888777777777766654
No 457
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=36.44 E-value=1e+02 Score=27.84 Aligned_cols=69 Identities=7% Similarity=-0.026 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
++++++-+-+.. .+..++.+++++.. ....++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 27 ~~~~lvav~d~~------~~~~~~~a~~~~~~------~~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 92 (336)
T 2p2s_A 27 AGAELAGVFESD------SDNRAKFTSLFPSV------PFAASAEQLITDASIDLIACAVI--PCDRAELALRTLDAGKD 92 (336)
T ss_dssp TTCEEEEEECSC------TTSCHHHHHHSTTC------CBCSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEeCCC------HHHHHHHHHhcCCC------cccCCHHHHhhCCCCCEEEEeCC--hhhHHHHHHHHHHCCCc
Confidence 677876444432 22334455665321 12367888887 5899888775 33334456689999999
Q ss_pred EEEcC
Q 011954 385 VLGTA 389 (474)
Q Consensus 385 vI~s~ 389 (474)
|++-.
T Consensus 93 Vl~EK 97 (336)
T 2p2s_A 93 FFTAK 97 (336)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99854
No 458
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=36.38 E-value=53 Score=28.52 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=30.1
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+.|+.++|+..-.-.|=..+...|+++|+++|+.|..+=
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 356778887655545556778899999999999998874
No 459
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=36.15 E-value=45 Score=27.64 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=23.5
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||+++. |....=..+++.|.+.|++|.+++..
T Consensus 1 MkvlVtG------atG~iG~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIG------ATGRAGSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEc------CCchhHHHHHHHHHhCCCEEEEEEcC
Confidence 5676653 22345567788888999999999864
No 460
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=36.09 E-value=39 Score=30.16 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=23.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
++|||+++.. | ..=..++..|.+.||+|+++..
T Consensus 2 ~~m~i~iiG~----G---~~G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 2 NAMKIAIAGA----G---AMGSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp --CEEEEECC----S---HHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCeEEEECc----C---HHHHHHHHHHHhCCCcEEEEEC
Confidence 4689998863 2 3445667888889999998864
No 461
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=35.70 E-value=46 Score=28.30 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=28.1
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (474)
++||+.+...-+--|-.....+|+.+|++. |+.|.++-..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 455555554332223357889999999998 9999999754
No 462
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=35.67 E-value=48 Score=29.12 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=29.9
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+||+.|+..-+--|-.....+||..|++.|..|.++-.+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4567777653333344578999999999999999999754
No 463
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=35.63 E-value=74 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=29.9
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
..+||+++.... ..++..++.++...|.+|.++++..
T Consensus 179 ~glkva~vGD~~-----nnva~Sl~~~~~~lG~~v~~~~P~~ 215 (365)
T 4amu_A 179 KNKKIVFIGDYK-----NNVGVSTMIGAAFNGMHVVMCGPDN 215 (365)
T ss_dssp TTCEEEEESSTT-----SHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred CCCEEEEECCCC-----cchHHHHHHHHHHcCCEEEEECCcc
Confidence 368999987631 2578999999999999999999764
No 464
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.47 E-value=2.1e+02 Score=24.55 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=27.0
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
.+..+|.++.+.....-....+..+.+++.+.|+++.+....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 47 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTE 47 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 345689999876432111245566667778899999887643
No 465
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=35.44 E-value=90 Score=28.31 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=30.7
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
..+||+++.... .+++..++.++...|.+|.++++..-
T Consensus 160 ~gl~va~vGD~~-----~~va~Sl~~~~~~~G~~v~~~~P~~~ 197 (328)
T 3grf_A 160 KGIKFAYCGDSM-----NNVTYDLMRGCALLGMECHVCCPDHK 197 (328)
T ss_dssp GGCCEEEESCCS-----SHHHHHHHHHHHHHTCEEEEECCSSG
T ss_pred CCcEEEEeCCCC-----cchHHHHHHHHHHcCCEEEEECChHh
Confidence 367899988621 26899999999999999999997643
No 466
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=35.41 E-value=74 Score=25.40 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHhcCCEEEEcC---CCCCCCCchHHHH---HHhcCCCEEEcC
Q 011954 351 SPYLASIDVLVQNS---QARGECFGRITIE---AMAFQLPVLGTA 389 (474)
Q Consensus 351 ~~~~~~adv~v~ps---~~~~E~~~~~~~E---Ama~G~PvI~s~ 389 (474)
...+..||++|.-- +. .+.=+.+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g-~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRG-HEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSS-SSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCC-CCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 46788999987642 11 2333446666 789999999853
No 467
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=35.36 E-value=2.4e+02 Score=25.14 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=77.2
Q ss_pred EEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC-cEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecCCCC
Q 011954 272 LFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP-SMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNKTLT 349 (474)
Q Consensus 272 ~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~-~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~~~ 349 (474)
.++.+..-.+.|.++.|+++++.- | .+.+-..|.|. ...-..+.+.+..|+. ..|.|.|..+-
T Consensus 113 ~~lvv~~ds~~~sl~dL~~~ak~~-----------p~~~~~g~~g~Gs----~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a 177 (312)
T 2f5x_A 113 MTIIARGDFPPNNIKELAEYVKKN-----------ADKISLANAGIGA----ASHLCGTMLVEALGVNLLTIPYKGTAPA 177 (312)
T ss_dssp EEEEECTTCSCCSHHHHHHHHHHH-----------GGGCEEEESSTTS----HHHHHHHHHHHHHTCCCEEEECSSHHHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhC-----------CCceEEeCCCCCc----HHHHHHHHHHHHHCCCeEEeccCChHHH
Confidence 344565556788998888876531 3 34554444443 1222233445556664 23445554445
Q ss_pred hHHHHh-cCCEEEEcCCCCCCCCchHHHHHHhcCCC-EEEc----------CCCC-----cceeeeeCCceeeecCCCC-
Q 011954 350 VSPYLA-SIDVLVQNSQARGECFGRITIEAMAFQLP-VLGT----------AAGG-----TMEIVVNGTTGLLHPTGKE- 411 (474)
Q Consensus 350 ~~~~~~-~adv~v~ps~~~~E~~~~~~~EAma~G~P-vI~s----------~~~g-----~~e~v~~~~~G~l~~~~d~- 411 (474)
+.+++. ..|+.+.... .+.+.+..|.- +|+. +++- .+++....-.|++++.+.+
T Consensus 178 ~~aL~~G~VD~~~~~~~--------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~ 249 (312)
T 2f5x_A 178 MNDLLGKQVDLMCDQTT--------NTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPK 249 (312)
T ss_dssp HHHHHTTSSCEEEEEHH--------HHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCH
T ss_pred HHHHHcCCccEEEechH--------HHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCH
Confidence 556653 5788775431 34555566643 3322 2221 1112112236888887751
Q ss_pred -ChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 011954 412 -GVTPLANNIVKLATHVERRLTMGKKGY 438 (474)
Q Consensus 412 -~~~~la~~i~~ll~~~~~~~~~~~~~~ 438 (474)
-++.|.+++.+++.+++..+.+.+.+.
T Consensus 250 ~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 250 PVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 034566666777779988887765543
No 468
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.27 E-value=71 Score=26.62 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=61.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCC-CeEEEecC--CCChHHHHhcCC
Q 011954 282 GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQ-DHVHFVNK--TLTVSPYLASID 358 (474)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~--~~~~~~~~~~ad 358 (474)
.|-...|.+|+.-+.. - ..-.+.++|... .....+.+.++..|-. -+-+|+|- .+...+-|..=|
T Consensus 46 ~kT~~~L~~A~~~i~~-------~-~~~~ilfV~tk~----~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pd 113 (202)
T 3j20_B 46 RKTDERLKVAGKFLAK-------F-EPQSILAVSVRL----YGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPD 113 (202)
T ss_dssp HHHHHHHHHHHHHHHH-------S-CSSCEEEECCCT----TTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCS
T ss_pred HHHHHHHHHHHHHHHh-------h-CCCeEEEEecCh----HHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCC
Confidence 4555566666655433 1 234667888765 2345666677665532 12245552 222223345678
Q ss_pred EEEEcCCCCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCC
Q 011954 359 VLVQNSQARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGK 410 (474)
Q Consensus 359 v~v~ps~~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d 410 (474)
++++... ..--..+.||...|+|+|+- |....++.| -+.+|.+|
T Consensus 114 llvv~Dp---~~d~~ai~EA~~l~IP~Ial~DTn~~p~~V-----d~~IP~Nd 158 (202)
T 3j20_B 114 VLIVTDP---RADHQAMREAVEIGIPIVALVDTENLLSYV-----DLAIPTNN 158 (202)
T ss_dssp EEEESCT---TTSHHHHHHHHHHTCCEEEEECTTCCCTTC-----CEEEECCC
T ss_pred eEEEeCC---ccchHHHHHHHHcCCCEEEEEcCCCCcccc-----CEEEeCCC
Confidence 8777653 22346788999999999974 333334433 24555554
No 469
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=35.26 E-value=51 Score=28.33 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE---EEecC--CCChHHHHhc
Q 011954 282 GKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV---HFVNK--TLTVSPYLAS 356 (474)
Q Consensus 282 ~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v---~~~g~--~~~~~~~~~~ 356 (474)
.|-...|.+|+.-+.. .. .+-+++++|..+ .....+++.+...|-. .| +|+|- .+-....+..
T Consensus 47 ~kT~~~L~~A~~~i~~-i~------~~~~iLfVgtk~----~~~~~V~~~A~~~g~~-yv~~~RWlgG~LTN~~t~~~~~ 114 (241)
T 2xzm_B 47 EETWQKIKLAARVIAA-VQ------HPEDVMVVCSRI----YGQRAAIKFAGYTHCK-STSSSRWTPGTLTNYQTLKYEE 114 (241)
T ss_dssp HHHHHHHHHHHHHHHH-CS------SGGGEEEECCSH----HHHHHHHHHHHHHTCB-CCCCSSCCTTTTTCTTCTTCCC
T ss_pred HHHHHHHHHHHHHHHH-Hh------CCCeEEEEECCH----HHHHHHHHHHHHhCCE-EeccccccCCcccCccccccCC
Confidence 3444555555544432 21 123567888753 2334456666666542 22 46652 1222234556
Q ss_pred CCEEEEcCCCCCCCCchHHHHHHhcCCCEEEc-CCCCcceeeeeCCceeeecCCC
Q 011954 357 IDVLVQNSQARGECFGRITIEAMAFQLPVLGT-AAGGTMEIVVNGTTGLLHPTGK 410 (474)
Q Consensus 357 adv~v~ps~~~~E~~~~~~~EAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d 410 (474)
-|++++... ..-...+.||...|+|+|+- |....++.| -+.+|.+|
T Consensus 115 PdlliV~Dp---~~e~~ai~EA~~l~IPvIalvDTn~~p~~V-----Dy~IP~Nd 161 (241)
T 2xzm_B 115 PRVLIVTDP---RSDFQAIKEASYVNIPVIALCDSDSPLAYV-----DVVIPCNN 161 (241)
T ss_dssp CSEEEESCT---TTTHHHHHHHTTTTCCEEECCCSSSCCTTC-----CEECCSCC
T ss_pred CCEEEEECC---CcchHHHHHHHHhCCCEEEEecCCCCcccc-----cEEEeCCC
Confidence 788877653 23357899999999999985 332333333 24555555
No 470
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=35.23 E-value=37 Score=30.57 Aligned_cols=40 Identities=13% Similarity=-0.133 Sum_probs=28.1
Q ss_pred ccCEEEEEecCCCC-CChh-HHHHHHHHHHHhcCcEEEEEeC
Q 011954 73 KSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 73 ~~~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|++||+++....+. -... .....++++|.+.||+|..+..
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~ 53 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDP 53 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECT
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999853222 0011 2467889999999999999873
No 471
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=35.21 E-value=39 Score=32.25 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|||++. ++ .....+++++++.|++|.++...
T Consensus 2 ~k~ilI~g------~g-~~~~~~~~a~~~~G~~vv~v~~~ 34 (451)
T 1ulz_A 2 VNKVLVAN------RG-EIAVRIIRACKELGIPTVAIYNE 34 (451)
T ss_dssp CSSEEECC------CH-HHHHHHHHHHHHHTCCEEEEECG
T ss_pred CceEEEEC------Cc-HHHHHHHHHHHHcCCeEEEEech
Confidence 56788775 22 35678999999999999988753
No 472
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=35.10 E-value=56 Score=29.41 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=25.0
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
+|+|++.. |....=..+++.|.+.|++|.+++...
T Consensus 13 ~M~ilVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 47 (342)
T 2x4g_A 13 HVKYAVLG------ATGLLGHHAARAIRAAGHDLVLIHRPS 47 (342)
T ss_dssp CCEEEEES------TTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEEC------CCcHHHHHHHHHHHHCCCEEEEEecCh
Confidence 46787664 223456677888888999999998543
No 473
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=35.06 E-value=45 Score=29.69 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=25.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
++|+||++. |....=..+++.|.+.||+|.+++...
T Consensus 6 ~~~~vlVtG------atG~iG~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 6 LKHRILITG------GAGFIGGHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp -CCEEEEET------TTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCCeEEEEC------CCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 367777664 223455678888889999999998543
No 474
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=35.02 E-value=29 Score=31.05 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=23.9
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|++|+|+++. |....=..+++.|.+.|++|.++..
T Consensus 1 M~~~~ilVtG------atG~iG~~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 1 MAKQRVFIAG------HRGMVGSAIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp -CCEEEEEET------TTSHHHHHHHHHHTTCTTEEEECCC
T ss_pred CCCCEEEEEC------CCcHHHHHHHHHHHhCCCeEEEEec
Confidence 4567777653 3334566788889999999887653
No 475
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=34.99 E-value=35 Score=30.44 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=27.3
Q ss_pred CEEEEEecCCCCCC-hhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|||++++.....-- .......+++++++.||+|.++...
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 68999986532100 0134567999999999999998753
No 476
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=34.80 E-value=76 Score=25.24 Aligned_cols=85 Identities=9% Similarity=-0.096 Sum_probs=39.2
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHH-hcCcE---EEEEeCCCCC--Cchhhhhhcccchhccceeee-ehhcHHH
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLR-GVGAE---VVWITNQKPN--EPDEVIYSLEHKMLDRGVQVL-SAKGEKA 144 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~-~~G~~---V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 144 (474)
|+++|||||+... . .-......+.+.+. +.|.+ +.+.+..... ............+...|+.+. ..+.+..
T Consensus 5 ~~~~~VLFVCtgN-~-cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~~~Gid~s~~ar~l~~ 82 (161)
T 1d1q_A 5 KPKISVAFIALGN-F-CRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKT 82 (161)
T ss_dssp SCCEEEEEEESSS-S-SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCCCCBCBCCG
T ss_pred CCCCEEEEEcCCc-H-HHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCCcCCCCCCHHHHHHHHHcCcCCCceEeECCH
Confidence 4567999999721 1 11234555555553 35543 6666522111 000111112234455566553 1111111
Q ss_pred HhhhcCCCEEEEccc
Q 011954 145 INTALNADLVVLNTA 159 (474)
Q Consensus 145 ~~~~~~~DiV~~~~~ 159 (474)
.....+|+|++-+.
T Consensus 83 -~~~~~~DlIl~M~~ 96 (161)
T 1d1q_A 83 -KHFDEYDYIIGMDE 96 (161)
T ss_dssp -GGGGTCSEEEESSH
T ss_pred -HHHhhCCEEEEeCH
Confidence 12357999998753
No 477
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=34.70 E-value=88 Score=28.15 Aligned_cols=35 Identities=6% Similarity=0.095 Sum_probs=21.4
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITN 112 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~ 112 (474)
+++|+||++. |....=..+++.|.+.| ++|..+..
T Consensus 22 ~~~~~vlVtG------atG~iG~~l~~~L~~~g~~~~v~~~~~ 58 (346)
T 4egb_A 22 SNAMNILVTG------GAGFIGSNFVHYMLQSYETYKIINFDA 58 (346)
T ss_dssp --CEEEEEET------TTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred cCCCeEEEEC------CccHHHHHHHHHHHhhCCCcEEEEEec
Confidence 3456777653 33345667888898999 55555553
No 478
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=34.64 E-value=2.3e+02 Score=24.72 Aligned_cols=215 Identities=10% Similarity=0.005 Sum_probs=102.4
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcCCCE
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALNADL 153 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (474)
+++|.++.+.....-.......+.+++.+.|+++.+.....+.... . . ........++|.
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--~-----------------~-~i~~l~~~~vdg 61 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQ--M-----------------S-QIENMINRGVDV 61 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHH--H-----------------H-HHHHHHHTTCSE
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH--H-----------------H-HHHHHHHcCCCE
Confidence 4679898886543333466777888888999999988764321000 0 0 111223468998
Q ss_pred EEEcccchh---hHHhHHhhhcccccccceeeeeeccccccchhhhhhccccc-ccccccccccHHHHHHhHHHHhcCCC
Q 011954 154 VVLNTAVAG---KWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFV-AGAMIDSYTTAEYWKNRTRERLGIRM 229 (474)
Q Consensus 154 V~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (474)
|++...... ..+..+... ..|++..-..... ... ..+..+.........+.+.+..| .
T Consensus 62 iIi~~~~~~~~~~~~~~~~~~-----~iPvV~~~~~~~~-----------~~~~~~V~~D~~~~g~~a~~~L~~~~G--~ 123 (313)
T 3m9w_A 62 LVIIPYNGQVLSNVVKEAKQE-----GIKVLAYDRMIND-----------ADIDFYISFDNEKVGELQAKALVDIVP--Q 123 (313)
T ss_dssp EEEECSSTTSCHHHHHHHHTT-----TCEEEEESSCCTT-----------SCCSEEEEECHHHHHHHHHHHHHHHCS--S
T ss_pred EEEeCCChhhhHHHHHHHHHC-----CCeEEEECCcCCC-----------CCceEEEecCHHHHHHHHHHHHHHhCC--C
Confidence 887653322 222332222 2355543222111 111 12222333333333444443334 2
Q ss_pred CCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEE---EecccccCcchHHHHHHHHHHHHHHHHhccCC
Q 011954 230 PETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFA---IINSVSRGKGQDLFLHSFYESLQLIREKKLQV 306 (474)
Q Consensus 230 ~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~---~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~ 306 (474)
.++-++....+..... .. ...-++.+++. +.. ..+.+. +.+.. ..+...+++.++.+ ++
T Consensus 124 ~~i~~i~g~~~~~~~~-~R----~~Gf~~~l~~~-~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-------~~ 185 (313)
T 3m9w_A 124 GNYFLMGGSPVDNNAK-LF----RAGQMKVLKPY-VDS-GKIKVVGDQWVDGW----LPENALKIMENALT-------AN 185 (313)
T ss_dssp EEEEEEESCTTCHHHH-HH----HHHHHHHHHHH-HHT-TSEEEEEEEECGGG----CHHHHHHHHHHHHH-------HT
T ss_pred CcEEEEECCCCCccHH-HH----HHHHHHHHHhh-ccC-CCEEEEeeccCCCc----CHHHHHHHHHHHHH-------hC
Confidence 3566664322211100 00 00012223332 111 122222 12333 33444455555544 23
Q ss_pred -CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCC
Q 011954 307 -PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLT 349 (474)
Q Consensus 307 -~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~ 349 (474)
+++..+++.++. ....+.+.+++.|+.+.|.+.|+...
T Consensus 186 ~~~~~ai~~~~d~-----~a~g~~~al~~~G~~~di~vig~d~~ 224 (313)
T 3m9w_A 186 NNKIDAVVASNDA-----TAGGAIQALSAQGLSGKVAISGQDAD 224 (313)
T ss_dssp TTCCCEEEESSHH-----HHHHHHHHHHTTTCTTTSEECCCSCC
T ss_pred CCCeeEEEECCCc-----hHHHHHHHHHHcCCCCCcEEEecCCC
Confidence 567778877652 45567778888998877999998643
No 479
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=34.61 E-value=45 Score=33.90 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=27.1
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQK 114 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (474)
||.+|||++. ++ .....+++++++.|+++.++....
T Consensus 26 ~m~~kILI~g------~G-eia~~iiraar~lGi~~vav~s~~ 61 (675)
T 3u9t_A 26 RSIQRLLVAN------RG-EIACRVMRSARALGIGSVAVHSDI 61 (675)
T ss_dssp CCCSEEEECC------CH-HHHHHHHHHHHHHTCEEEEEECSG
T ss_pred cCCCEEEEEC------CC-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 3467888865 33 357888999999999999887543
No 480
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=34.59 E-value=61 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=25.7
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 113 (474)
|||++-.... .| .....++++.|.+. |++|+++...
T Consensus 1 ~~IllgvTGs--ia-a~k~~~ll~~L~~~~g~~V~vv~T~ 37 (197)
T 1sbz_A 1 MKLIVGMTGA--TG-APLGVALLQALREMPNVETHLVMSK 37 (197)
T ss_dssp CEEEEEECSS--SC-HHHHHHHHHHHHTCTTCEEEEEECH
T ss_pred CEEEEEEeCh--HH-HHHHHHHHHHHHhccCCEEEEEECc
Confidence 4666655411 12 35689999999998 9999998854
No 481
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=34.58 E-value=61 Score=27.22 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred ccCEEEEEecCCCCCCh-hHHHHHHHHHHHhcCcEEEEEeCCCC
Q 011954 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGAEVVWITNQKP 115 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (474)
+++||++... ||. .....++++.|.+.| +|+++.....
T Consensus 18 ~~k~IllgvT----Gsiaa~k~~~ll~~L~~~g-~V~vv~T~~A 56 (209)
T 1mvl_A 18 RKPRVLLAAS----GSVAAIKFGNLCHCFTEWA-EVRAVVTKSS 56 (209)
T ss_dssp -CCEEEEEEC----SSGGGGGHHHHHHHHHTTS-EEEEEECTGG
T ss_pred CCCEEEEEEe----CcHHHHHHHHHHHHHhcCC-CEEEEEcchH
Confidence 3678887775 332 245889999999999 9999886543
No 482
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=34.55 E-value=1.7e+02 Score=27.62 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhcC--
Q 011954 307 PSMHAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAFQ-- 382 (474)
Q Consensus 307 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~G-- 382 (474)
++++++-+-+. ..+..++.+++++.+. +.. ..++.+++. ..|+++..+. ...-.-.+.+|+..|
T Consensus 48 ~~~~lvav~d~------~~~~~~~~a~~~g~~~-~~~---~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aG~~ 115 (438)
T 3btv_A 48 SQFQITALYSP------KIETSIATIQRLKLSN-ATA---FPTLESFASSSTIDMIVIAIQ--VASHYEVVMPLLEFSKN 115 (438)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCTT-CEE---ESSHHHHHHCSSCSEEEECSC--HHHHHHHHHHHHHHGGG
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCCc-cee---eCCHHHHhcCCCCCEEEEeCC--cHHHHHHHHHHHHCCCC
Confidence 57888755553 3556777788887642 111 246778886 5899998775 333334566899999
Q ss_pred ----CCEEEcC
Q 011954 383 ----LPVLGTA 389 (474)
Q Consensus 383 ----~PvI~s~ 389 (474)
++|++-.
T Consensus 116 ~~~~khVl~EK 126 (438)
T 3btv_A 116 NPNLKYLFVEW 126 (438)
T ss_dssp CTTCCEEEEES
T ss_pred cccceeEEecC
Confidence 9998864
No 483
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.23 E-value=2.3e+02 Score=24.53 Aligned_cols=212 Identities=11% Similarity=0.003 Sum_probs=100.8
Q ss_pred ccCEEEEEecC----CCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhh
Q 011954 73 KSKLVLLVSHE----LSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTA 148 (474)
Q Consensus 73 ~~~kIl~v~~~----~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (474)
+...|.++.+. ....-....+..+.+++.+.|+++.++....... . .........
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~--------------------~~~~~~l~~ 63 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEK-Y--------------------QSLIHLVET 63 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCC-C--------------------HHHHHHHHH
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhh-H--------------------HHHHHHHHc
Confidence 35679888873 2111112456667777888999999987542110 0 012223345
Q ss_pred cCCCEEEEcccch-hhHHhHHhhhcccccccceeeeeeccccccchhhhhhcccccccccccccccHHHHHHhHHHHhcC
Q 011954 149 LNADLVVLNTAVA-GKWLDGVLKDKVSQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSYTTAEYWKNRTRERLGI 227 (474)
Q Consensus 149 ~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (474)
.++|-|++..... ...+..+... ..|+|..-..... .....+..+.........+.+.+ .
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~-----~iPvV~~~~~~~~-----------~~~~~V~~D~~~~~~~a~~~L~~-~-- 124 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQ-----NFPFLALGRSHLP-----------KPYAWFDFDNHAGASLAVKRLLE-L-- 124 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHT-----TCCEEEESCCCCS-----------SCCEEEEECHHHHHHHHHHHHHH-T--
T ss_pred CCCCEEEEeCCCCChHHHHHHHhC-----CCCEEEECCCCCC-----------CCCCEEEcChHHHHHHHHHHHHH-C--
Confidence 6889887764322 2222222222 2355543222111 11122222333333333333332 2
Q ss_pred CCCCeEEEeCCCCccccchhhhhHHHHHhHHHHHHhcCCCCCCEEEEEecccccCcchHHHHHHHHHHHHHHHHhccCCC
Q 011954 228 RMPETYVVHLGNSKDLMDIAEDSVARRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVP 307 (474)
Q Consensus 228 ~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~ 307 (474)
...++-++....+..... .+...-.+..++.|++.+...+ ..+.... +...+++.++.+ +++
T Consensus 125 G~~~I~~i~~~~~~~~~~------~R~~Gf~~al~~~g~~~~~~~~-~~~~~~~----~~~~~~~~~~l~-------~~~ 186 (294)
T 3qk7_A 125 GHQRIAFVSTDARISYVD------QRLQGYVQTMSEAGLMPLAGYL-QKADPTR----PGGYLAASRLLA-------LEV 186 (294)
T ss_dssp TCCCEEEEEESSCCHHHH------HHHHHHHHHHHTTTCCCCTTCE-EEECSSH----HHHHHHHHHHHH-------SSS
T ss_pred CCceEEEEeCCcccchHH------HHHHHHHHHHHHCCCCCChhHe-ecCCCCH----HHHHHHHHHHHc-------CCC
Confidence 345676665432211110 0000012223345665433222 2344333 334445555544 346
Q ss_pred cEEEEEEcCCCCcCchHHHHHHHHHHHcCCC--CeEEEecCC
Q 011954 308 SMHAVVVGSDMNAQTKFETELRNFVAEKKIQ--DHVHFVNKT 347 (474)
Q Consensus 308 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~ 347 (474)
+...+++.++. ....+.+.+++.|+. +.|.+.|+.
T Consensus 187 ~~~ai~~~nd~-----~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 187 PPTAIITDCNM-----LGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp CCSEEEESSHH-----HHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred CCcEEEECCHH-----HHHHHHHHHHHcCCCCCCceEEEeec
Confidence 67778887752 445566777787764 788888864
No 484
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=34.17 E-value=3e+02 Score=25.83 Aligned_cols=109 Identities=15% Similarity=0.070 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcCchHHHHHHHHHHHcCCCCeEEEecCCCChHHHHh--cCCEEEEcCCCCCCCCchHHHHHHhc-----C
Q 011954 310 HAVVVGSDMNAQTKFETELRNFVAEKKIQDHVHFVNKTLTVSPYLA--SIDVLVQNSQARGECFGRITIEAMAF-----Q 382 (474)
Q Consensus 310 ~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~--~adv~v~ps~~~~E~~~~~~~EAma~-----G 382 (474)
+++|+-+.+ .....+.......+. .|.....-++....+. ..|++++=-.- .+.-|+.+++.+.. .
T Consensus 3 ~iLivdD~~----~~~~~l~~~L~~~~~--~v~~a~~~~~al~~~~~~~~dlvllD~~m-p~~~G~~~~~~l~~~~~~~~ 75 (459)
T 1w25_A 3 RILVVDDIE----ANVRLLEAKLTAEYY--EVSTAMDGPTALAMAARDLPDIILLDVMM-PGMDGFTVCRKLKDDPTTRH 75 (459)
T ss_dssp EEEEECSST----THHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHhcCcccCC
Confidence 455665543 255666666665543 3444443333333332 35777763321 33346677776642 5
Q ss_pred CCEEEc-CCCCc---ceeeeeCCceeeecCCCCChHHHHHHHHHHhhCH
Q 011954 383 LPVLGT-AAGGT---MEIVVNGTTGLLHPTGKEGVTPLANNIVKLATHV 427 (474)
Q Consensus 383 ~PvI~s-~~~g~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (474)
+|||.- ..+.. .+.+..|..+++..|-+ .++|..+|..++...
T Consensus 76 ~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 76 IPVVLITALDGRGDRIQGLESGASDFLTKPID--DVMLFARVRSLTRFK 122 (459)
T ss_dssp SCEEEEECSSCHHHHHHHHHHTCCEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 788653 33322 23344578899999998 999999999887533
No 485
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=34.15 E-value=57 Score=27.77 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=47.8
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhc-CcEEEEEeCCCCCCchhhhhhcccchhccceeeeehhcHHHHhhhcC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAKGEKAINTALN 150 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (474)
||..||.|+-. +.=|....+.-+..+.+.+ +.+|.+++....-...+.... . .....+.+.++
T Consensus 1 mmvvKiGiiKl--GNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~-~-------------~~~~~~~~~~~ 64 (283)
T 1qv9_A 1 MTVAKAIFIKC--GNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAA-V-------------EMALDIAEDFE 64 (283)
T ss_dssp -CCEEEEEEEC--SCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHH-H-------------HHHHHHHHHHC
T ss_pred CeeEEEEEEEe--cccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHH-H-------------HHhhhhhhhcC
Confidence 56778988874 2223334444444444444 788999886543322211110 0 00111225689
Q ss_pred CCEEEEcccchhhHHhHHhhhcccccccceee
Q 011954 151 ADLVVLNTAVAGKWLDGVLKDKVSQVLPKVLW 182 (474)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 182 (474)
||+++.-+|.++.-.....+..+.....|.+.
T Consensus 65 pDfvI~isPN~a~PGP~~ARE~l~~~~iP~Iv 96 (283)
T 1qv9_A 65 PDFIVYGGPNPAAPGPSKAREMLADSEYPAVI 96 (283)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEE
T ss_pred CCEEEEECCCCCCCCchHHHHHHHhCCCCEEE
Confidence 99999888766554444334333333344443
No 486
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=34.06 E-value=36 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.044 Sum_probs=24.2
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
+|+++|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 7 ~k~vlVT-----Gas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 7 VRHALIT-----AGTKGLGKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCEEEEe-----CCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence 4566666 333345668889999999999988654
No 487
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.02 E-value=2.5e+02 Score=24.93 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=28.5
Q ss_pred ccccccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 69 LNFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++..+..+|.++.+.....-....+..+.+++.+.|+++.++...
T Consensus 59 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 103 (333)
T 3jvd_A 59 LREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEAN 103 (333)
T ss_dssp -----CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred hhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 333456789999886432222355666777888899999998754
No 488
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=33.95 E-value=52 Score=27.59 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=53.7
Q ss_pred EEEEEEcCCCCcCchHHHHHHHHHHHcCCCCeE--EEecC--CCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHhcCCC
Q 011954 309 MHAVVVGSDMNAQTKFETELRNFVAEKKIQDHV--HFVNK--TLTVSPYLASIDVLVQNSQARGECFGRITIEAMAFQLP 384 (474)
Q Consensus 309 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~l~~~v--~~~g~--~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma~G~P 384 (474)
-+++++|... .....+++.++..|-. .| +|+|- .+....-+..=|++++... ..--..+.||...|+|
T Consensus 69 ~~iLfVgTk~----~~~~~V~~~A~~~g~~-~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp---~~e~~ai~EA~~l~IP 140 (208)
T 1vi6_A 69 SKILLVAARQ----YAHKPVQMFSKVVGSD-YIVGRFIPGTLTNPMLSEYREPEVVFVNDP---AIDKQAVSEATAVGIP 140 (208)
T ss_dssp GGEEEEECSG----GGHHHHHHHHHHHCCE-EEESSCCTTTTTCTTSTTCCCCSEEEESCT---TTTHHHHHHHHHTTCC
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHhCCe-eecCEECCCcccChhhHhhCCCCEEEEECC---CcchhHHHHHHHhCCC
Confidence 4566777653 2344556666665531 11 23442 1111122455788777653 2234789999999999
Q ss_pred EEEc-CCCCcceeeeeCCceeeecCCCCChHHHHHHHHHHh
Q 011954 385 VLGT-AAGGTMEIVVNGTTGLLHPTGKEGVTPLANNIVKLA 424 (474)
Q Consensus 385 vI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (474)
+|+- |....++.| -+.+|.+|+ .-.-...+..++
T Consensus 141 vIalvDTn~~p~~V-----d~~IP~Ndd-s~~SI~Li~~~l 175 (208)
T 1vi6_A 141 VVALCDSNNSSADV-----DLVIPTNNK-GRRALAIVYWLL 175 (208)
T ss_dssp EEEEECTTCCCTTC-----SEEEESCCS-CHHHHHHHHHHH
T ss_pred EEEEeCCCCCcccc-----CEEEeCCCC-chhHHHHHHHHH
Confidence 9985 333334433 245555553 333333344443
No 489
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=33.85 E-value=59 Score=27.66 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=28.8
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEe
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWIT 111 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 111 (474)
+||.++|+..-.-.|=..+...|+++|+++|+.|..+=
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 45677777654444545778899999999999998864
No 490
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=33.67 E-value=47 Score=28.18 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=24.0
Q ss_pred cccCEEEEEecCCCCCChhHHHHHHHHHHHhcC-cEEEEEeCC
Q 011954 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-AEVVWITNQ 113 (474)
Q Consensus 72 ~~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~ 113 (474)
|+||+|++.. |....=..+++.|.+.| ++|.++...
T Consensus 21 ~~mk~vlVtG------atG~iG~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 21 GHMKNVLILG------AGGQIARHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp -CCEEEEEET------TTSHHHHHHHHHHTTCTTEEEEEEESS
T ss_pred CcccEEEEEe------CCcHHHHHHHHHHHhCCCceEEEEEcC
Confidence 4455565543 22345567888999999 999998854
No 491
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=33.64 E-value=2.4e+02 Score=24.51 Aligned_cols=104 Identities=12% Similarity=0.031 Sum_probs=59.9
Q ss_pred EEEecccccCcchHHHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCcC---------chHHHHHHHHHHHcCCCCeEEE
Q 011954 273 FAIINSVSRGKGQDLFLHSFYESLQLIREKKLQVPSMHAVVVGSDMNAQ---------TKFETELRNFVAEKKIQDHVHF 343 (474)
Q Consensus 273 i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i~G~g~~~~---------~~~~~~l~~~~~~~~l~~~v~~ 343 (474)
++.+|- ......+..++.+..+.+ -...++-.+...++. .+....+++.+++.|++--..+
T Consensus 25 ~vIAgp-c~~~~~e~a~~~a~~l~~---------~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~ 94 (262)
T 1zco_A 25 TIIAGP-CSIESREQIMKVAEFLAE---------VGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEV 94 (262)
T ss_dssp EEEEEC-SBCCCHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEeC-CCCCCHHHHHHHHHHHHH---------cCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEee
Confidence 334454 455567777777766654 234455544321111 2356678888888887422222
Q ss_pred ecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHHh-cCCCEEEcCC
Q 011954 344 VNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAMA-FQLPVLGTAA 390 (474)
Q Consensus 344 ~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAma-~G~PvI~s~~ 390 (474)
+. ...+..+-..+|++=.+|. +.....++++++ .|+||+.++-
T Consensus 95 ~d-~~~~~~l~~~vd~~kIga~---~~~n~~ll~~~a~~~kPV~lk~G 138 (262)
T 1zco_A 95 MD-TRHVELVAKYSDILQIGAR---NSQNFELLKEVGKVENPVLLKRG 138 (262)
T ss_dssp CC-GGGHHHHHHHCSEEEECGG---GTTCHHHHHHHTTSSSCEEEECC
T ss_pred CC-HHhHHHHHhhCCEEEECcc---cccCHHHHHHHHhcCCcEEEecC
Confidence 22 2334444344899999996 444455555554 7999998763
No 492
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=33.56 E-value=2.1e+02 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=31.0
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPN 116 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (474)
..+||+++... ..++..++.++...|.+|.++++..-.
T Consensus 187 ~glkva~vGD~------~nva~Sl~~~l~~lG~~v~~~~P~~~~ 224 (353)
T 3sds_A 187 EGLKIAWVGDA------NNVLFDLAIAATKMGVNVAVATPRGYE 224 (353)
T ss_dssp TTCEEEEESCC------CHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred CCCEEEEECCC------chHHHHHHHHHHHcCCEEEEECCcccC
Confidence 37789998763 258999999999999999999976543
No 493
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=33.55 E-value=96 Score=27.86 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=49.0
Q ss_pred HHHhcCCEEEEcCCCCCCCCchHHHHHHhc-CCCEEEcCCCCccee--eee-------C--------CceeeecCCCCCh
Q 011954 352 PYLASIDVLVQNSQARGECFGRITIEAMAF-QLPVLGTAAGGTMEI--VVN-------G--------TTGLLHPTGKEGV 413 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~~~~~~EAma~-G~PvI~s~~~g~~e~--v~~-------~--------~~G~l~~~~d~~~ 413 (474)
.-++.||++|..... .|+|--.+++++.. ++++|.... |+.-+ -.+ + +-=+..++.. .
T Consensus 66 ~~l~~ADlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n--~ 141 (312)
T 2o1e_A 66 ANIQDADLFVYNSEY-METWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL--A 141 (312)
T ss_dssp HHHHHSSEEEESCTT-TSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHH--H
T ss_pred HHHhcCCEEEEcCCC-hHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHH--H
Confidence 346788999887653 67777777777653 344443322 22110 000 0 0012333333 5
Q ss_pred HHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 011954 414 TPLANNIVKLAT--HVERRLTMGKKGYERVKD 443 (474)
Q Consensus 414 ~~la~~i~~ll~--~~~~~~~~~~~~~~~~~~ 443 (474)
..+++.|...|. ||+-.....+|+.++..+
T Consensus 142 ~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~ 173 (312)
T 2o1e_A 142 QKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (312)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 567777766665 787777777777766654
No 494
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=33.30 E-value=1.1e+02 Score=28.70 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=42.3
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCCCCCCchhhhhhcccchhccceeeeehh--cHHHHhh--hc
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK--GEKAINT--AL 149 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~ 149 (474)
.++|+++.. .++-..+++.|.+.|++|+++...... ...+...++.++... ....+.. ..
T Consensus 4 ~~~viIiG~-------Gr~G~~va~~L~~~g~~vvvId~d~~~---------v~~~~~~g~~vi~GDat~~~~L~~agi~ 67 (413)
T 3l9w_A 4 GMRVIIAGF-------GRFGQITGRLLLSSGVKMVVLDHDPDH---------IETLRKFGMKVFYGDATRMDLLESAGAA 67 (413)
T ss_dssp CCSEEEECC-------SHHHHHHHHHHHHTTCCEEEEECCHHH---------HHHHHHTTCCCEESCTTCHHHHHHTTTT
T ss_pred CCeEEEECC-------CHHHHHHHHHHHHCCCCEEEEECCHHH---------HHHHHhCCCeEEEcCCCCHHHHHhcCCC
Confidence 356776652 378888999999999999999754221 122233455444322 1122222 35
Q ss_pred CCCEEEEcccc
Q 011954 150 NADLVVLNTAV 160 (474)
Q Consensus 150 ~~DiV~~~~~~ 160 (474)
+.|+|++....
T Consensus 68 ~A~~viv~~~~ 78 (413)
T 3l9w_A 68 KAEVLINAIDD 78 (413)
T ss_dssp TCSEEEECCSS
T ss_pred ccCEEEECCCC
Confidence 78998887643
No 495
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=33.25 E-value=61 Score=29.45 Aligned_cols=38 Identities=26% Similarity=0.181 Sum_probs=27.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
++|++++.+....+| ....++...|.+.|+++.+....
T Consensus 29 ~~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 29 FPASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp -CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECC
T ss_pred cceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEec
Confidence 467888776444333 56778899999999999887644
No 496
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=33.10 E-value=2.5e+02 Score=24.61 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHcCCCCeEEEecCCCChHHHHhcCCEEEEcCCCCCCCCchHHHHHH-hcCCCEEEcCCC
Q 011954 323 KFETELRNFVAEKKIQDHVHFVNKTLTVSPYLASIDVLVQNSQARGECFGRITIEAM-AFQLPVLGTAAG 391 (474)
Q Consensus 323 ~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~~~E~~~~~~~EAm-a~G~PvI~s~~~ 391 (474)
+....+++.++++|++--..++. .+.+..+-..+|++=.+|. +..-..+++++ ..|+||+.++-.
T Consensus 89 ~gl~~l~~~~~~~Gl~~~te~~d-~~~~~~l~~~vd~~kIgs~---~~~n~~ll~~~a~~~kPV~lk~G~ 154 (276)
T 1vs1_A 89 EGLKLLRRAGDEAGLPVVTEVLD-PRHVETVSRYADMLQIGAR---NMQNFPLLREVGRSGKPVLLKRGF 154 (276)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCC-GGGHHHHHHHCSEEEECGG---GTTCHHHHHHHHHHTCCEEEECCT
T ss_pred HHHHHHHHHHHHcCCcEEEecCC-HHHHHHHHHhCCeEEECcc---cccCHHHHHHHHccCCeEEEcCCC
Confidence 45677888889999853222222 2344444344899999996 44455556554 479999988633
No 497
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=32.65 E-value=1.6e+02 Score=24.61 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=40.5
Q ss_pred cCEEEEEecCCCCCChhHHHHHHHHHHHhcC--cEEEEEeCCCCCCchhhhhhcccchhccceeeeehh-----------
Q 011954 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--AEVVWITNQKPNEPDEVIYSLEHKMLDRGVQVLSAK----------- 140 (474)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 140 (474)
||||+++.+. ...-+..|..+.++.. .+|..+..+.+... ....-...|+++....
T Consensus 2 m~riavl~Sg-----~Gsnl~ali~~~~~~~l~~eI~~Visn~~~a~------v~~~A~~~gIp~~~~~~~~~~~r~~~d 70 (211)
T 3p9x_A 2 MKRVAIFASG-----SGTNAEAIIQSQKAGQLPCEVALLITDKPGAK------VVERVKVHEIPVCALDPKTYPSKEAYE 70 (211)
T ss_dssp -CEEEEECCT-----TCHHHHHHHHHHHTTCCSSEEEEEEESCSSSH------HHHHHHTTTCCEEECCGGGSSSHHHHH
T ss_pred CCEEEEEEeC-----CchHHHHHHHHHHcCCCCcEEEEEEECCCCcH------HHHHHHHcCCCEEEeChhhcCchhhhH
Confidence 5788887752 2255777777765432 46665554333211 1223345566654221
Q ss_pred -cHHHHhhhcCCCEEEEcc
Q 011954 141 -GEKAINTALNADLVVLNT 158 (474)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~ 158 (474)
.....++..++|+|++-.
T Consensus 71 ~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 71 IEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 123445678999999864
No 498
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=32.60 E-value=59 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=24.0
Q ss_pred CEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeC
Q 011954 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITN 112 (474)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 112 (474)
|||.+-+... |. ..-..+.+.|.+.||+|.=+..
T Consensus 2 MkIaigsDha---G~-~lK~~i~~~L~~~G~eV~D~G~ 35 (149)
T 2vvr_A 2 KKIAFGCDHV---GF-ILKHEIVAHLVERGVEVIDKGT 35 (149)
T ss_dssp CEEEEEECTT---GG-GGHHHHHHHHHHTTCEEEECCC
T ss_pred cEEEEEeCch---hH-HHHHHHHHHHHHCCCEEEEeCC
Confidence 7888777533 32 3345588899999999987743
No 499
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=32.59 E-value=2.4e+02 Score=24.23 Aligned_cols=41 Identities=15% Similarity=-0.011 Sum_probs=26.2
Q ss_pred ccCEEEEEecCCCCCChhHHHHHHHHHHHhcCcEEEEEeCC
Q 011954 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQ 113 (474)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (474)
|+.+|.++.+.....-.......+.+++.+.|+++.++...
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 41 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ 41 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 35678888876432112345666677788899999887653
No 500
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=32.59 E-value=80 Score=27.98 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=45.1
Q ss_pred HHHhcCCEEEEcCCCCCCCCchHHHHHHhcC-CCEEEcCCCCcceeee-----e-----------C-CceeeecCCCCCh
Q 011954 352 PYLASIDVLVQNSQARGECFGRITIEAMAFQ-LPVLGTAAGGTMEIVV-----N-----------G-TTGLLHPTGKEGV 413 (474)
Q Consensus 352 ~~~~~adv~v~ps~~~~E~~~~~~~EAma~G-~PvI~s~~~g~~e~v~-----~-----------~-~~G~l~~~~d~~~ 413 (474)
.-++.||++|..... .|+|=-.++++.... +.+|.. ..|+. +.. + + +-=+..++.. .
T Consensus 56 ~~l~~Adlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~~--~ 130 (286)
T 3gi1_A 56 AAIYDADLFVYHSHT-LEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWTDPVL--A 130 (286)
T ss_dssp HHHHTSSEEEESCTT-TSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGGSHHH--H
T ss_pred HHHHhCCEEEEcCCC-chHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceecCHHH--H
Confidence 446778888877653 666655565554332 333332 22222 100 0 0 0012223333 5
Q ss_pred HHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 011954 414 TPLANNIVKLAT--HVERRLTMGKKGYERVKD 443 (474)
Q Consensus 414 ~~la~~i~~ll~--~~~~~~~~~~~~~~~~~~ 443 (474)
..+++.|...|. ||+-.....+|+.++..+
T Consensus 131 ~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 162 (286)
T 3gi1_A 131 GEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE 162 (286)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 567777766665 787777777777666544
Done!