BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011955
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
Length = 454
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 232/478 (48%), Positives = 293/478 (61%), Gaps = 46/478 (9%)
Query: 1 MGKKGKWFASVKNAFSPESKEKKDKKSKKKWFGKQKEEGSNSAPLETVKTTLPPPAPPLQ 60
M KK KW +VK AFSP+SK+ K + + ++ S P+ + P ++
Sbjct: 1 MVKKAKWLKNVKKAFSPDSKKLKHE-------SVECQDSVISYPVLIATSRSSSPQFEVR 53
Query: 61 PEEVEITVAENELSNHVANEEVITAVPAMAAV----SADQSVTEVRIVTNTRFAGKSKEE 116
+EV E + + + + + +TA A V S+ +SV + IV N RFAGKSKEE
Sbjct: 54 VDEVNY---EQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQA-IVVN-RFAGKSKEE 108
Query: 117 AAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRS 176
AAAI IQ+ FRG+LARR + +RG RLKLLMEG VV+RQAA TL+CMQTLSR+QSQIRS
Sbjct: 109 AAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRS 168
Query: 177 RRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEANLLSKYEATMRRERA 235
RR+RMSEENQA +QLLQKHAKEL ++ G W+ S QSKEQVEA +L KYEATMRRERA
Sbjct: 169 RRIRMSEENQARHKQLLQKHAKELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRERA 228
Query: 236 MAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERWMAARPWESRSATEKEPNNDQSS 295
+AY+FTHQQ K+ SK++NPMFMDP NPTWGWSWLERWMA RPWES + NND SS
Sbjct: 229 LAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWESSEKEQNTTNNDNSS 288
Query: 296 VK-SANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQSPSTPTKSASSTVAKKT 354
VK S NR+ GE +KS R +LNS P+TP SASST +
Sbjct: 289 VKNSTNRNSQGGETAKSSNRNKLNSS----------------TKPNTP--SASSTATRNP 330
Query: 355 KPASPRGSVSGLDDDSRSMVSVQSYRRHSIAGSSVRDDESLPTSPSAPR--YMVPTESA- 411
+ P S S + RR SIA SV DDE+L +S +A R ++PT +
Sbjct: 331 RKKRPIPSSIKSKSSDDEAKSSERNRRPSIARPSVSDDETL-SSSTARRSSNLIPTTKSA 389
Query: 412 --KAKSRLQSPLGVDKNGTPEKATL---ASAKKRLAYPPSPA-RPRRHSGPPKLESSI 463
K KS+ S + V + T E + L A AKKRL+ SPA +PRR S PPK+E +
Sbjct: 390 RGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPRRSSAPPKVEKGV 447
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
Length = 668
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 183/334 (54%), Gaps = 51/334 (15%)
Query: 115 EEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQI 174
+ A+A +IQ AFRGY+AR++ RAL+GLVRL+ ++ G VKRQ N ++ MQ + R+QSQI
Sbjct: 321 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 380
Query: 175 RSRRVRMSEENQALQRQLLQKHAKELAMQMG-EEWDDSIQSKEQVEANLLSKYEATMRRE 233
+SRR++M ENQA Q+ + AK A + G + WDDS+ +KE+ ++ K +A ++RE
Sbjct: 381 QSRRIKM-LENQA---QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAIIKRE 436
Query: 234 RAMAYSFTHQQTWKNSSKSSNPMFMDPRN-PTWGWSWLERWMAARPWESRSATEKEPNND 292
R+MAY+++ ++ WKNS KS+ D R+ P W W+W++R P S + + +P D
Sbjct: 437 RSMAYAYS-RKLWKNSPKSTQ----DNRSFPQW-WNWVDR---QNPLASPAPSYSQPQRD 487
Query: 293 QSSVKSANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQSPSTPTKSASSTVAK 352
S + +S+S ++ + D T+ + S++ H +PS P + +S +
Sbjct: 488 FRLTPS---RLCPSPLSQSSKQHHIRLDNHFDTSTPRSSRSTFH-TPSRPIHTGTSRYS- 542
Query: 353 KTKPASPRGSVSGLDDDSRSMVSVQSYRRHSIAGSSVRDDESLPTSPSAPRYMVPTESAK 412
RG + G D S +DD+SL + P P YM PT SAK
Sbjct: 543 -------RGRLRGQD-------------------SPFKDDDSLTSCPPFPSYMAPTVSAK 576
Query: 413 AKSRLQSPLGVDKNGTPEKATLASAKKRLAYPPS 446
AK R S GTP S K+R++YPP+
Sbjct: 577 AKVRPNSNPKERVMGTP-----VSEKRRMSYPPT 605
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 1 MGKKGKWFASVKNAFSPESKEK 22
M KKG WF+++K F+P SKEK
Sbjct: 1 MVKKGSWFSAIKRVFTPHSKEK 22
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
Length = 587
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 110 AGKSKEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSR 169
A + + E AA +Q AFRGYLARRA AL+G++RL+ L+ G +V+RQA TL + + R
Sbjct: 107 AERIQREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVR 166
Query: 170 LQSQIRSRRVRMSEENQALQR----QLLQKHAKELAMQMGEEWDDSIQSKEQVEANLLSK 225
LQ+ R R +R S+ + R QLLQ + L +
Sbjct: 167 LQAFARGREIRKSDIGVQVYRKCRLQLLQGN------------------------KLANP 202
Query: 226 YEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPTWGWSWLERWMAARPW 279
+A + ++ A +F Q+ +S K D NP WLE W A+ W
Sbjct: 203 TDAYLGIKKLTANAFA-QKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 17/61 (27%)
Query: 397 TSPSAPRYMVPTESAKAKSRLQ-SPLGVDKNGTPEKATLASAKKRLAYPPSPARPRRHSG 455
TSPS P YM T+SAKAK RLQ SP +++GT EKAT+ PRRHS
Sbjct: 494 TSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGT-EKATV---------------PRRHSL 537
Query: 456 P 456
P
Sbjct: 538 P 538
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
Length = 794
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 62/213 (29%)
Query: 80 EEVITAVPAMAAVSADQSVTEVRIVTNTRFAGKSKE---EAAAIRIQTAFRGYLARRALR 136
E+V + V + V ++S ++ I+ K E E+ + IQ A RG+LARR L
Sbjct: 176 EDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELL 235
Query: 137 ALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSR-------RVRM----SEEN 185
+ +++L+ + G +V+ QA +LRC+Q + ++Q+ +R+R RV SE N
Sbjct: 236 RSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRARHSTKDGSRVSATSDKSEPN 295
Query: 186 QALQRQLLQKHAKELAMQMGEEWDDSIQSKEQVEANLLSKYEATMRRERAMAYSFTHQQT 245
A Q+ L K AK L
Sbjct: 296 AAAQKLLENKFAKHLM-------------------------------------------- 311
Query: 246 WKNSSKSSNPMFM--DPRNPTWGWSWLERWMAA 276
S+ + P+ + DP P+ W+WLERWM+
Sbjct: 312 --ESTPKTKPINIKCDPTKPSSAWNWLERWMSV 342
>sp|P36425|SP17_RABIT Sperm surface protein Sp17 OS=Oryctolagus cuniculus GN=SPA17 PE=1
SV=2
Length = 146
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 96 QSVTEVR--IVTNTRFAGKSKEEAAAIRIQTAFRGYLARRALRALR 139
QSVTE ++T K KEE AA++IQ AFRG+LAR ++ +R
Sbjct: 89 QSVTEEETPVLTIDSEDDKDKEEMAALKIQAAFRGHLAREDVKKIR 134
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 37.4 bits (85), Expect = 0.23, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 278 PWESRSATEKEPNNDQSSVKSANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQ 337
P S ++ + P + + S S S + + S + +Y S K SPT+ + +P Q
Sbjct: 2295 PKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQ 2354
Query: 338 SPSTPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQ 377
+ ++P S S + K P SP S+S D +V+
Sbjct: 2355 NIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVVNAH 2394
Score = 37.0 bits (84), Expect = 0.33, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 278 PWESRSATEKEPNNDQSSVKSANRSIVAGEISKSFARYQLNSDKLSPTTNQKISKTPKHQ 337
P ++ ++ N Q +V S S+ + + S + +Y S K SPT+ + +PK+
Sbjct: 2267 PTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY- 2325
Query: 338 SPSTPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQSYRRHSIAGSSVRDDESLPT 397
SP++P S +S K P SP+ S + ++ +Y +SI PT
Sbjct: 2326 SPTSPKYSPTS---PKYSPTSPKYSPT---SPVAQNIASPNYSPYSITSPKFS-----PT 2374
Query: 398 SP----SAPRY-----MVPTESAKAKSRLQSPLGVDKN-------GTPEKATLASAKKRL 441
SP S+P Y + + LQSP+ + +N ++A + AK
Sbjct: 2375 SPAYSISSPVYDKSGVVNAHQPMSPAYILQSPVQIKQNVQDVNMFSPIQQAHVDEAKNDD 2434
Query: 442 AYPPSP 447
+ P P
Sbjct: 2435 PFSPMP 2440
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2
Length = 1818
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 21/117 (17%)
Query: 114 KEEAAAIRIQTAFRGYLARRALRALR-------GLVRLKLLMEGPVV--KRQAANTLRCM 164
+E AAI IQ AFR AR+ L+AL+ L RL + ME VV +R+ + +
Sbjct: 883 RERDAAIVIQCAFRRLKARQELKALKIEARSAEHLKRLNVGMENKVVQLQRKIDDQNKEF 942
Query: 165 QTLSRLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEA 220
+TLS S + S + A++ ++K KELA Q +E D S+Q +E+V++
Sbjct: 943 KTLSEQLSAVTS--------SHAVE---VEKLKKELAHYQQNQEADTSLQLQEEVQS 988
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1
Length = 1846
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 21/113 (18%)
Query: 118 AAIRIQTAFRGYLARRALRALR-------GLVRLKLLMEGPVV--KRQAANTLRCMQTLS 168
AAI IQ AFR AR+AL+AL+ L RL + ME VV +R+ + + +TLS
Sbjct: 888 AAIVIQCAFRRLKARQALKALKIEARSAEHLKRLNVGMENKVVQLQRKIDDQNKEFKTLS 947
Query: 169 RLQSQIRSRRVRMSEENQALQRQLLQKHAKELA-MQMGEEWDDSIQSKEQVEA 220
S + S A++ ++K KELA Q +E D S+Q +E+V++
Sbjct: 948 EQLSAVTS--------THAME---VEKLKKELARYQQNQEADPSLQLQEEVQS 989
>sp|Q9LVA0|BAG7_ARATH BAG family molecular chaperone regulator 7 OS=Arabidopsis thaliana
GN=BAG7 PE=1 SV=1
Length = 446
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 5/36 (13%)
Query: 111 GKSKE---EAAAIRIQTAFRGYLARR--ALRALRGL 141
GK+KE E AA+ IQ AF+ YL RR +LRALR L
Sbjct: 296 GKNKEMPPEYAAVMIQRAFKAYLIRRSKSLRALRDL 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.121 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,861,422
Number of Sequences: 539616
Number of extensions: 6397922
Number of successful extensions: 32004
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 451
Number of HSP's that attempted gapping in prelim test: 30563
Number of HSP's gapped (non-prelim): 1586
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)