Query 011955
Match_columns 474
No_of_seqs 297 out of 580
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 4.7E-14 1E-18 122.3 6.3 57 401-458 34-90 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.8 1.8E-05 3.9E-10 50.2 3.2 21 116-136 1-21 (21)
3 smart00015 IQ Short calmodulin 97.3 0.00021 4.5E-09 47.5 2.7 22 115-136 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.2 0.0004 8.7E-09 79.3 6.1 64 115-182 672-736 (862)
5 KOG0520 Uncharacterized conser 96.4 0.0019 4E-08 74.5 2.7 72 114-185 808-887 (975)
6 PTZ00014 myosin-A; Provisional 95.4 0.011 2.4E-07 68.0 3.3 41 117-157 778-819 (821)
7 KOG0160 Myosin class V heavy c 94.6 0.051 1.1E-06 62.7 5.7 66 114-182 694-759 (862)
8 COG5022 Myosin heavy chain [Cy 90.9 0.45 9.7E-06 57.5 6.6 65 115-180 744-809 (1463)
9 KOG0520 Uncharacterized conser 89.6 0.91 2E-05 53.2 7.6 63 118-180 835-930 (975)
10 KOG2128 Ras GTPase-activating 88.4 0.62 1.3E-05 56.1 5.2 67 115-181 564-639 (1401)
11 PF00612 IQ: IQ calmodulin-bin 88.3 0.12 2.7E-06 32.6 -0.3 19 139-157 2-20 (21)
12 KOG0164 Myosin class I heavy c 87.4 0.71 1.5E-05 52.6 4.6 55 117-182 697-752 (1001)
13 PTZ00014 myosin-A; Provisional 79.5 2 4.3E-05 50.0 4.3 41 139-182 778-818 (821)
14 smart00015 IQ Short calmodulin 79.3 0.62 1.4E-05 30.8 0.1 19 139-157 4-22 (26)
15 KOG4427 E3 ubiquitin protein l 76.5 8.7 0.00019 44.5 7.9 40 113-154 27-67 (1096)
16 KOG0942 E3 ubiquitin protein l 71.8 2.9 6.3E-05 48.8 2.9 28 113-140 26-54 (1001)
17 KOG0377 Protein serine/threoni 59.6 11 0.00023 41.5 4.1 44 113-156 14-58 (631)
18 KOG2128 Ras GTPase-activating 48.7 22 0.00047 43.6 4.6 61 120-183 539-611 (1401)
19 KOG0162 Myosin class I heavy c 48.1 15 0.00032 42.7 3.0 38 117-157 697-735 (1106)
20 KOG0161 Myosin class II heavy 47.4 51 0.0011 42.3 7.6 41 117-157 774-818 (1930)
21 KOG0161 Myosin class II heavy 40.3 31 0.00068 44.0 4.4 46 135-180 769-815 (1930)
22 KOG0163 Myosin class VI heavy 40.2 28 0.00062 40.6 3.7 33 115-147 812-845 (1259)
23 KOG1767 40S ribosomal protein 40.2 20 0.00043 32.2 2.0 19 126-144 72-92 (110)
24 PF08763 Ca_chan_IQ: Voltage g 39.4 31 0.00067 25.3 2.5 21 115-135 8-28 (35)
25 COG5022 Myosin heavy chain [Cy 35.0 30 0.00066 42.7 3.0 50 129-178 735-785 (1463)
26 PRK10984 DNA-binding transcrip 20.7 28 0.00061 32.1 -0.4 7 264-271 53-59 (127)
27 PRK09334 30S ribosomal protein 20.5 31 0.00067 29.8 -0.2 20 125-144 52-73 (86)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.48 E-value=4.7e-14 Score=122.29 Aligned_cols=57 Identities=47% Similarity=0.611 Sum_probs=47.4
Q ss_pred CCCCCccCccccccccccCCCCCCCCCCCCccccccccccccCCCCCCCCCcCCCCCC
Q 011955 401 APRYMVPTESAKAKSRLQSPLGVDKNGTPEKATLASAKKRLAYPPSPARPRRHSGPPK 458 (474)
Q Consensus 401 ~PsYMa~TeSAKAK~R~qs~pr~~~~~~pek~~~~~~kkRlS~p~s~~~~rr~s~~pk 458 (474)
+|||||+|||||||+|+||+|++ +++++|......++||||||.+.+.....+..|+
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrq-R~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~ 90 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQ-RPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPR 90 (102)
T ss_pred CCCccchhhhhhhhhhccCCccc-CCCccccccccccccccccCCCCCCCcCCCCCCc
Confidence 89999999999999999999997 7777766544567999999987766666666665
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.83 E-value=1.8e-05 Score=50.24 Aligned_cols=21 Identities=52% Similarity=0.809 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 011955 116 EAAAIRIQTAFRGYLARRALR 136 (474)
Q Consensus 116 e~AAi~IQsafRGylARral~ 136 (474)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.29 E-value=0.00021 Score=47.48 Aligned_cols=22 Identities=55% Similarity=0.776 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 011955 115 EEAAAIRIQTAFRGYLARRALR 136 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral~ 136 (474)
.+.+|+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999884
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.25 E-value=0.0004 Score=79.35 Aligned_cols=64 Identities=28% Similarity=0.358 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 115 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
...+++.||..||||+.|+.|..+ ++++.+|+++||.++|+. ++ ...+++.+|..+|+...|+.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHHH
Confidence 455788899999999999999999 889999999999999981 12 55566666666666655543
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.39 E-value=0.0019 Score=74.52 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhhhHHH-------HHHhHHHHHHHHHHHHHhhhhhhh
Q 011955 114 KEEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTL-------RCMQTLSRLQSQIRSRRVRMSEEN 185 (474)
Q Consensus 114 ~ee~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa~~tl-------r~~qA~vriQs~iR~rr~R~~~~~ 185 (474)
....||..||.-||||+.|+.|..+ .=+|+||+-|||+.+|+++.... +-+.++-++|+.+|+++.|...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 4567999999999999999999999 77999999999999999997332 245566778999999988876554
No 6
>PTZ00014 myosin-A; Provisional
Probab=95.36 E-value=0.011 Score=67.98 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhh
Q 011955 117 AAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa 157 (474)
..++.||+++|||++|+.|..+ .++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999999999999998 8999999999999988764
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=94.57 E-value=0.051 Score=62.70 Aligned_cols=66 Identities=23% Similarity=0.207 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 114 KEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 114 ~ee~AAi~IQsafRGylARral~aLkgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
..-.+++.||..+||+++|+........+.+|..+|++..|+++ .....+++.+|+.+|+..+|..
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 45678999999999999998333337788999999999999999 5567789999999999999983
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=90.87 E-value=0.45 Score=57.48 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhh
Q 011955 115 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVR 180 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R 180 (474)
-...+++||++||||+.|+.|... +.+..+|.+.+|..+++.+...+. .....++|..++...-|
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHhhH
Confidence 355899999999999999888777 888888999999998876643332 44556667666655444
No 9
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=89.64 E-value=0.91 Score=53.23 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHh-hhH--H--------HHhhhccCcccchhhh----------------------HHHHHH
Q 011955 118 AAIRIQTAFRGYLARRALRAL-RGL--V--------RLKLLMEGPVVKRQAA----------------------NTLRCM 164 (474)
Q Consensus 118 AAi~IQsafRGylARral~aL-kgi--V--------rLQalvRG~~vRrqa~----------------------~tlr~~ 164 (474)
=+|+||+++|||-.|+.|+.| -++ . ++|.-+||+..|+.+. ...+--
T Consensus 835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~ 914 (975)
T KOG0520|consen 835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT 914 (975)
T ss_pred ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999987 222 1 2377788887765432 223456
Q ss_pred hHHHHHHHHHHHHHhh
Q 011955 165 QTLSRLQSQIRSRRVR 180 (474)
Q Consensus 165 qA~vriQs~iR~rr~R 180 (474)
+|+++||+.+|....+
T Consensus 915 ~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 915 RAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHhcCHHHH
Confidence 7999999999988777
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=88.36 E-value=0.62 Score=56.08 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhhHH----HHHHHHh-hhHHHHhhhccCcccchhhhH----HHHHHhHHHHHHHHHHHHHhhh
Q 011955 115 EEAAAIRIQTAFRGYLA----RRALRAL-RGLVRLKLLMEGPVVKRQAAN----TLRCMQTLSRLQSQIRSRRVRM 181 (474)
Q Consensus 115 ee~AAi~IQsafRGylA----Rral~aL-kgiVrLQalvRG~~vRrqa~~----tlr~~qA~vriQs~iR~rr~R~ 181 (474)
..-..+.||.++|||+. ...+... +.+|.+|++.||+++|+.+.. ...||...+.||+.+|.+..|.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 34468899999999993 2233333 889999999999999999873 3569999999999999998875
No 11
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=88.29 E-value=0.12 Score=32.59 Aligned_cols=19 Identities=5% Similarity=0.254 Sum_probs=13.1
Q ss_pred hhHHHHhhhccCcccchhh
Q 011955 139 RGLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa 157 (474)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3566777777777777765
No 12
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=87.36 E-value=0.71 Score=52.61 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhh-HHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 117 AAAIRIQTAFRGYLARRALRALRG-LVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aLkg-iVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
.-++.||.+|||+++|..|+.++. ++.++ ..|.+.++ ..+..||.++|+.+.++.
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhccc
Confidence 468999999999999999999944 44445 44522222 234567888888776654
No 13
>PTZ00014 myosin-A; Provisional
Probab=79.54 E-value=2 Score=49.99 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=34.4
Q ss_pred hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
.-++.||+.+||++.|+++ ++..++++.||+.+|++..++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999999 4558899999999999887643
No 14
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=79.32 E-value=0.62 Score=30.75 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=15.6
Q ss_pred hhHHHHhhhccCcccchhh
Q 011955 139 RGLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa 157 (474)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5678888888888888876
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=8.7 Score=44.52 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhhhHH-HHhhhccCcccc
Q 011955 113 SKEEAAAIRIQTAFRGYLARRALRALRGLV-RLKLLMEGPVVK 154 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral~aLkgiV-rLQalvRG~~vR 154 (474)
.+.|.||+.||..+|||++|+.+.. -|. .+-.++-.+.+-
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~--~I~~e~d~~f~~d~~d 67 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQI--EIQEEFDNLFSCDSVD 67 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhcCCcc
Confidence 3678999999999999999997762 222 234555555444
No 16
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.83 E-value=2.9 Score=48.82 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHh-hh
Q 011955 113 SKEEAAAIRIQTAFRGYLARRALRAL-RG 140 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral~aL-kg 140 (474)
.++|.+||+||+.+|||++|+..+.+ |.
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998877 53
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=59.62 E-value=11 Score=41.50 Aligned_cols=44 Identities=27% Similarity=0.228 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHhhhHHHHhhhc-cCcccchh
Q 011955 113 SKEEAAAIRIQTAFRGYLARRALRALRGLVRLKLLM-EGPVVKRQ 156 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral~aLkgiVrLQalv-RG~~vRrq 156 (474)
.+--.|||.||.-||+|.||...+.--....+|++- -|++=.-+
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQdQ~k 58 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQDQAK 58 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCccchHH
Confidence 355789999999999999999887655566668874 45444333
No 18
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=48.68 E-value=22 Score=43.64 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHHHhhhhHHHHHHHHhh--------hHHHHhhhccCcccchhhh----HHHHHHhHHHHHHHHHHHHHhhhhh
Q 011955 120 IRIQTAFRGYLARRALRALR--------GLVRLKLLMEGPVVKRQAA----NTLRCMQTLSRLQSQIRSRRVRMSE 183 (474)
Q Consensus 120 i~IQsafRGylARral~aLk--------giVrLQalvRG~~vRrqa~----~tlr~~qA~vriQs~iR~rr~R~~~ 183 (474)
.+||+..|||..|-.+++.- .++.+|+++||.++ ++ .......-+|.+|+..|+...|...
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 45599999999999888762 56778999999986 22 2233455689999999999998764
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=48.10 E-value=15 Score=42.71 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhh-HHHHhhhccCcccchhh
Q 011955 117 AAAIRIQTAFRGYLARRALRALRG-LVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aLkg-iVrLQalvRG~~vRrqa 157 (474)
-=|.+||.|||.|++||.|..+|. .. -|+-|..-||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t---~ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEAT---KLLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchHHHHHH
Confidence 368899999999999999988832 22 234555555555
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.44 E-value=51 Score=42.25 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHh----hhHHHHhhhccCcccchhh
Q 011955 117 AAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aL----kgiVrLQalvRG~~vRrqa 157 (474)
.-.+.+|+++||||+|+.|... -+|..||.-+|-++.-|..
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3567889999999999888755 5777778777766544443
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.27 E-value=31 Score=43.99 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=39.7
Q ss_pred HHHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhh
Q 011955 135 LRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVR 180 (474)
Q Consensus 135 l~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R 180 (474)
...| .-|+.+||.+||+++|+.+..-+..+.++..||.-+|.+...
T Consensus 769 d~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~l 815 (1930)
T KOG0161|consen 769 DEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKL 815 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344 677888999999999999999999999999999999998544
No 22
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=40.21 E-value=28 Score=40.64 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhh
Q 011955 115 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLL 147 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral~aL-kgiVrLQal 147 (474)
...+.+++|...||||+|+.++-- .|++++-+|
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 566889999999999999988754 566555443
No 23
>KOG1767 consensus 40S ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=40.21 E-value=20 Score=32.17 Aligned_cols=19 Identities=47% Similarity=0.823 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHh--hhHHHH
Q 011955 126 FRGYLARRALRAL--RGLVRL 144 (474)
Q Consensus 126 fRGylARral~aL--kgiVrL 144 (474)
++|-|||.+|+.| +|||+.
T Consensus 72 IngsLAr~alr~L~~kG~Ik~ 92 (110)
T KOG1767|consen 72 INGSLARAALRELSNKGVIKQ 92 (110)
T ss_pred hchHHHHHHHHHHHhcchHHH
Confidence 6899999999999 999976
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=39.44 E-value=31 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 011955 115 EEAAAIRIQTAFRGYLARRAL 135 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral 135 (474)
+--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999998853
No 25
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=34.99 E-value=30 Score=42.70 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=36.3
Q ss_pred hHHHHHHHHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHH
Q 011955 129 YLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRR 178 (474)
Q Consensus 129 ylARral~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr 178 (474)
+|.-+....+ .-+++||+.|||..+||++..+++.++++..+|.-++.++
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~ 785 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRR 785 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 3333334444 6788999999999999999777777777766666665553
No 26
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=20.72 E-value=28 Score=32.10 Aligned_cols=7 Identities=71% Similarity=2.537 Sum_probs=5.2
Q ss_pred CCCCchhh
Q 011955 264 TWGWSWLE 271 (474)
Q Consensus 264 ~wgWsWLE 271 (474)
=||| |||
T Consensus 53 FWGW-Wme 59 (127)
T PRK10984 53 FWGW-WME 59 (127)
T ss_pred hhhh-hee
Confidence 3999 665
No 27
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=20.55 E-value=31 Score=29.82 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.0
Q ss_pred HhhhhHHHHHHHHh--hhHHHH
Q 011955 125 AFRGYLARRALRAL--RGLVRL 144 (474)
Q Consensus 125 afRGylARral~aL--kgiVrL 144 (474)
-.+|-|||+.|+.| +|+|++
T Consensus 52 kI~~SlAr~~Lr~L~~kG~Ik~ 73 (86)
T PRK09334 52 GIKISVAKKVLRELEKRGVLVL 73 (86)
T ss_pred cchHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999 888754
Done!