Query 011955
Match_columns 474
No_of_seqs 297 out of 580
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 18:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 98.9 4.9E-10 1.7E-14 85.9 4.2 53 114-167 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 2.3E-08 7.9E-13 73.7 3.0 41 117-157 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.5 1.2E-07 4.1E-12 108.8 6.1 70 113-183 813-883 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.4 1.6E-07 5.5E-12 107.7 6.9 67 116-183 768-835 (1080)
5 2l53_B CAM, voltage-gated sodi 98.0 3.8E-06 1.3E-10 57.8 2.8 24 113-136 3-26 (31)
6 2kxw_B Sodium channel protein 97.8 5E-06 1.7E-10 55.6 1.6 23 113-135 3-25 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.4 9.3E-05 3.2E-09 54.2 3.2 43 139-182 4-46 (48)
8 1wdc_A Scallop myosin; calcium 96.7 0.001 3.5E-08 51.7 3.5 40 116-155 6-49 (64)
9 2bl0_A Major plasmodial myosin 96.6 0.00081 2.8E-08 52.2 2.4 22 117-138 5-26 (63)
10 2ix7_C Myosin-5A; contractIle 96.3 0.0021 7E-08 48.8 2.9 42 139-183 6-47 (58)
11 1kk8_A Myosin heavy chain, str 95.9 0.0034 1.2E-07 70.6 3.5 42 116-157 779-824 (837)
12 1wdc_A Scallop myosin; calcium 95.6 0.0088 3E-07 46.3 3.8 44 139-182 7-50 (64)
13 2bl0_A Major plasmodial myosin 95.6 0.0078 2.7E-07 46.6 3.2 44 139-182 5-48 (63)
14 3gn4_A Myosin-VI; unconvention 94.8 0.027 9.3E-07 51.3 4.7 34 115-148 44-78 (148)
15 1i84_S Smooth muscle myosin he 94.8 0.04 1.4E-06 63.9 7.3 41 117-157 793-837 (1184)
16 4dck_A Sodium channel protein 92.0 0.1 3.4E-06 48.4 3.6 25 113-137 127-151 (168)
17 1kk8_A Myosin heavy chain, str 90.7 0.19 6.4E-06 56.7 4.9 44 139-182 780-823 (837)
18 1i84_S Smooth muscle myosin he 85.6 0.58 2E-05 54.2 4.7 46 136-181 789-835 (1184)
19 1w7j_A Myosin VA; motor protei 85.2 0.5 1.7E-05 53.0 3.8 24 116-139 768-791 (795)
20 4anj_A Unconventional myosin-V 76.9 1.2 4E-05 51.5 3.0 36 115-151 774-810 (1052)
21 3gn4_A Myosin-VI; unconvention 41.2 17 0.00059 32.9 3.2 20 139-158 46-65 (148)
22 3dvk_B Voltage-dependent R-typ 26.9 23 0.00078 22.8 1.1 18 115-132 5-22 (23)
23 2f3y_B Voltage-dependent L-typ 26.4 36 0.0012 22.4 1.9 19 118-136 4-22 (26)
24 3iz6_V 40S ribosomal protein S 24.7 16 0.00056 31.5 0.1 20 125-144 71-92 (108)
25 2be6_D Voltage-dependent L-typ 24.6 49 0.0017 23.4 2.5 21 116-136 11-31 (37)
26 3bxl_B CAM, voltage-dependent 23.1 48 0.0016 21.8 2.1 18 117-134 3-20 (26)
27 3u5c_Z RP45, S31, YS23, 40S ri 21.5 15 0.0005 31.8 -0.8 19 126-144 71-91 (108)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.94 E-value=4.9e-10 Score=85.92 Aligned_cols=53 Identities=30% Similarity=0.421 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhhhHHHHHHhHH
Q 011955 114 KEEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTL 167 (474)
Q Consensus 114 ~ee~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~ 167 (474)
+.+.|||.||+.||||++|+.|..+ .++|.||+.+||+++|+.+. .++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence 5688999999999999999999999 79999999999999999994 45554544
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.3e-08 Score=73.66 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHh-h--hHHHHhhhccCcccchhh
Q 011955 117 AAAIRIQTAFRGYLARRALRAL-R--GLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aL-k--giVrLQalvRG~~vRrqa 157 (474)
.|||.||+.+|||++|+.|..+ + ..|.||+.+||+++|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 5899999999999999999988 3 788888888888888765
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.45 E-value=1.2e-07 Score=108.79 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhhh
Q 011955 113 SKEEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSE 183 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~~ 183 (474)
.+++.||++||+.||||++|+.|..+ .++|.||+.+||+++|+++. .++...+++.||+.+|++..|+..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARVHY 883 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHHHT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888 78888888888888888874 455566778888888777776543
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.44 E-value=1.6e-07 Score=107.73 Aligned_cols=67 Identities=28% Similarity=0.353 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhhh
Q 011955 116 EAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSE 183 (474)
Q Consensus 116 e~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~~ 183 (474)
..||+.||++||||++|+.|+.+ .+++.||+.+||+++|+.+ ..++...|++.||+.+|++.+|+.-
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHH
Confidence 56999999999999999999999 8999999999999999998 5578899999999999999998753
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=3.8e-06 Score=57.84 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHH
Q 011955 113 SKEEAAAIRIQTAFRGYLARRALR 136 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral~ 136 (474)
.+||.||+.||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999998764
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.84 E-value=5e-06 Score=55.61 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHH
Q 011955 113 SKEEAAAIRIQTAFRGYLARRAL 135 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral 135 (474)
.+||.||+.||.|||+||.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 47999999999999999998753
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.39 E-value=9.3e-05 Score=54.16 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=37.9
Q ss_pred hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
+.+|.||+.+||.++|+++ ..++...+++.||+.+|++.+|..
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHh
Confidence 6789999999999999999 556777899999999999988753
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.71 E-value=0.001 Score=51.66 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHh----hhHHHHhhhccCcccch
Q 011955 116 EAAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKR 155 (474)
Q Consensus 116 e~AAi~IQsafRGylARral~aL----kgiVrLQalvRG~~vRr 155 (474)
...++.||+..||||+|+.|..+ .++..||.-+|+++.++
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888888888887765 23334444444444433
No 9
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.63 E-value=0.00081 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHh
Q 011955 117 AAAIRIQTAFRGYLARRALRAL 138 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aL 138 (474)
..++.||+..||||+|+.|..+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~ 26 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQA 26 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777754
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.31 E-value=0.0021 Score=48.80 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=36.5
Q ss_pred hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMSE 183 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~~ 183 (474)
..+|.||+.+||+++|+.+ ++...+++.||+.+|++.+|+.-
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~ 47 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYA 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999 34457999999999999988763
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.93 E-value=0.0034 Score=70.65 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHh----hhHHHHhhhccCcccchhh
Q 011955 116 EAAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 116 e~AAi~IQsafRGylARral~aL----kgiVrLQalvRG~~vRrqa 157 (474)
..+|+.||+++||||+|+.|+.+ .+++.||..+||+++||..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34789999999999999999887 4567777777777776665
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=95.63 E-value=0.0088 Score=46.34 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=39.3
Q ss_pred hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
.-++.||+.+||+++|+.+...+...+|+..||..+|++..++.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56888999999999999999888889999999999999877654
No 13
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=95.56 E-value=0.0078 Score=46.56 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=39.3
Q ss_pred hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
.-++.||+.+||+++|+.+...+...+|+..||..+|++..++.
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45788999999999999999888889999999999999887764
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.75 E-value=0.027 Score=51.30 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhc
Q 011955 115 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLM 148 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral~aL-kgiVrLQalv 148 (474)
...|+|+||+..||||+|+.++-= .|++++.+|.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 677999999999999999988765 8888887764
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.75 E-value=0.04 Score=63.85 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHh----hhHHHHhhhccCcccchhh
Q 011955 117 AAAIRIQTAFRGYLARRALRAL----RGLVRLKLLMEGPVVKRQA 157 (474)
Q Consensus 117 ~AAi~IQsafRGylARral~aL----kgiVrLQalvRG~~vRrqa 157 (474)
.+|+.||+.+|||++|+.|..+ .+++.||..+||++.++.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999987 4899999999999998864
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.98 E-value=0.1 Score=48.43 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHH
Q 011955 113 SKEEAAAIRIQTAFRGYLARRALRA 137 (474)
Q Consensus 113 ~~ee~AAi~IQsafRGylARral~a 137 (474)
..|+.||+.||.+||.|+.|+.+..
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 5789999999999999999988775
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=90.73 E-value=0.19 Score=56.68 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=38.8
Q ss_pred hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRMS 182 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~~ 182 (474)
+-++.||+.+||++.|+++...+....|++.||..+|++..|+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56788999999999999997766777899999999999988764
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.58 E-value=0.58 Score=54.24 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHh-hhHHHHhhhccCcccchhhhHHHHHHhHHHHHHHHHHHHHhhh
Q 011955 136 RAL-RGLVRLKLLMEGPVVKRQAANTLRCMQTLSRLQSQIRSRRVRM 181 (474)
Q Consensus 136 ~aL-kgiVrLQalvRG~~vRrqa~~tlr~~qA~vriQs~iR~rr~R~ 181 (474)
..| .-++.||+.+||++.|+.+...+....+++.||..+|++..++
T Consensus 789 ~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k 835 (1184)
T 1i84_S 789 LKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX 835 (1184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345 5678899999999999999877777899999999999998775
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=85.22 E-value=0.5 Score=52.98 Aligned_cols=24 Identities=46% Similarity=0.746 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhh
Q 011955 116 EAAAIRIQTAFRGYLARRALRALR 139 (474)
Q Consensus 116 e~AAi~IQsafRGylARral~aLk 139 (474)
..+|+.||+++||||+|+.|+.++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999884
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=76.87 E-value=1.2 Score=51.53 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-hhHHHHhhhccCc
Q 011955 115 EEAAAIRIQTAFRGYLARRALRAL-RGLVRLKLLMEGP 151 (474)
Q Consensus 115 ee~AAi~IQsafRGylARral~aL-kgiVrLQalvRG~ 151 (474)
-+.+|+.||. +||||+|+.|+.+ ++.+.+|.+-|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~ 810 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKI 810 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777775 7999999999887 5566666544443
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=41.16 E-value=17 Score=32.93 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=15.6
Q ss_pred hhHHHHhhhccCcccchhhh
Q 011955 139 RGLVRLKLLMEGPVVKRQAA 158 (474)
Q Consensus 139 kgiVrLQalvRG~~vRrqa~ 158 (474)
..+|++|..|||+++|++..
T Consensus 46 ~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46777788888888888884
No 22
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=26.88 E-value=23 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 011955 115 EEAAAIRIQTAFRGYLAR 132 (474)
Q Consensus 115 ee~AAi~IQsafRGylAR 132 (474)
+--|+..||-.||-+..|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 456899999999988765
No 23
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=26.43 E-value=36 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 011955 118 AAIRIQTAFRGYLARRALR 136 (474)
Q Consensus 118 AAi~IQsafRGylARral~ 136 (474)
|...||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999988654
No 24
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.68 E-value=16 Score=31.51 Aligned_cols=20 Identities=45% Similarity=0.821 Sum_probs=17.4
Q ss_pred HhhhhHHHHHHHHh--hhHHHH
Q 011955 125 AFRGYLARRALRAL--RGLVRL 144 (474)
Q Consensus 125 afRGylARral~aL--kgiVrL 144 (474)
-.+|-|||++|+.| +|+|++
T Consensus 71 kI~gSLAR~aLreL~~kGlIk~ 92 (108)
T 3iz6_V 71 RINGSLARQAIKDLESRGAIRV 92 (108)
T ss_dssp HTCCHHHHHHHHHHHHHHTSCE
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 36899999999999 899865
No 25
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=24.58 E-value=49 Score=23.44 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 011955 116 EAAAIRIQTAFRGYLARRALR 136 (474)
Q Consensus 116 e~AAi~IQsafRGylARral~ 136 (474)
=-|-..||-.||-|..|+.-.
T Consensus 11 fYatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 11 FYATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999998653
No 26
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=23.13 E-value=48 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhHHHHH
Q 011955 117 AAAIRIQTAFRGYLARRA 134 (474)
Q Consensus 117 ~AAi~IQsafRGylARra 134 (474)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999998875
No 27
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=21.50 E-value=15 Score=31.80 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHh--hhHHHH
Q 011955 126 FRGYLARRALRAL--RGLVRL 144 (474)
Q Consensus 126 fRGylARral~aL--kgiVrL 144 (474)
.+|-|||++|+.| +|+|++
T Consensus 71 I~gSLAR~aLreL~~kGlIk~ 91 (108)
T 3u5c_Z 71 IGGSLARIALRHLEKEGIIKP 91 (108)
T ss_dssp CCTTHHHHHHHHHSSSSSCEE
T ss_pred hhHHHHHHHHHHHHHCCCEEE
Confidence 5789999999999 898865
Done!