Query 011956
Match_columns 474
No_of_seqs 469 out of 1405
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 18:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-46 3.8E-51 367.0 37.6 428 33-473 6-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.2E-41 1.8E-45 323.4 17.4 390 34-452 23-431 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.3E-38 4.4E-43 305.5 26.1 359 42-447 29-424 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1E-34 3.4E-39 282.6 30.3 392 67-461 47-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3E-36 1E-40 282.9 11.6 358 43-446 4-367 (375)
6 2xut_A Proton/peptide symporte 100.0 3.7E-30 1.3E-34 252.4 19.4 145 64-208 38-197 (524)
7 2cfq_A Lactose permease; trans 100.0 3.6E-32 1.2E-36 258.2 3.4 366 59-462 27-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.1E-13 3.7E-18 132.7 15.4 150 60-209 273-433 (451)
9 2cfq_A Lactose permease; trans 99.4 1.1E-12 3.9E-17 124.0 9.5 142 72-213 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 2.6E-12 9E-17 122.5 11.6 142 65-209 286-432 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.3 6.7E-12 2.3E-16 121.6 10.9 148 65-212 310-475 (491)
12 2gfp_A EMRD, multidrug resista 99.3 7.9E-12 2.7E-16 116.5 10.3 157 292-460 20-180 (375)
13 2xut_A Proton/peptide symporte 99.3 3E-11 1E-15 118.0 12.6 170 269-449 13-193 (524)
14 4gc0_A D-xylose-proton symport 99.2 1.7E-10 5.8E-15 111.7 15.5 152 61-213 299-467 (491)
15 2g9p_A Antimicrobial peptide l 63.9 2.7 9.3E-05 19.7 0.9 14 93-106 2-15 (26)
16 3mkt_A Multi antimicrobial ext 55.3 1.3E+02 0.0043 27.6 19.9 36 142-177 139-174 (460)
17 4dve_A Biotin transporter BIOY 25.5 1.8E+02 0.0061 23.3 6.3 25 80-104 99-123 (198)
18 3l1l_A Arginine/agmatine antip 25.0 2.5E+02 0.0087 25.5 8.5 14 88-101 54-67 (445)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.1e-46 Score=367.01 Aligned_cols=428 Identities=29% Similarity=0.537 Sum_probs=336.7
Q ss_pred chhHHHHHHHHHHHHHHhhccccccccccccccccccCC--------ChhhHHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 011956 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGL--------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR 104 (474)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr 104 (474)
..++.+.+.++.+++.+.+++|.++++..+|.+.++++. +.++.|++.+++.+|..++++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677777788899999999999999999988887743 345689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHH
Q 011956 105 GTMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTT 166 (474)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 166 (474)
+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999999 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc------------hhhHHHHHhHHHHHHHHHHhhccCCChhHHHhcCChhHHHHHHHHHhC
Q 011956 167 VHQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG 234 (474)
Q Consensus 167 ~~~~~~~~g~~~~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 234 (474)
+.+.+..+|.++++.++... +||+.+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999988877543 688888888888888888889999999999999999999988877654
Q ss_pred CCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcch---hHHH
Q 011956 235 ADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMI 311 (474)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 311 (474)
++...++..+..+... +..+.......+ ..+..........+........+..|.+.+.+..+.... ....
T Consensus 246 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLD---HGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---hhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHH
Confidence 3222111111111111 111111111111 223344445555556666777788888888877766544 4556
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhh
Q 011956 312 AMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPW 391 (474)
Q Consensus 312 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (474)
..++..+++.++++++.||+|||+.+..+...+.++++.+....... ......+....++..++..+..++.+
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67788889999999999999999999888888877777666543321 23344445555566666777788889
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhccchhHHHHHHHHHHHHhhheeCcCCCCCCHH
Q 011956 392 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLE 464 (474)
Q Consensus 392 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (474)
.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+ .+....++++++++++..++.++++||+|+|+.|
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 999999999999999999999999999999998877654 2334457788888888888888999999999999
Q ss_pred HHHhhcCCC
Q 011956 465 EIQASMNPF 473 (474)
Q Consensus 465 ~~~~~~~~~ 473 (474)
|+|+.+|++
T Consensus 473 ei~~~f~~~ 481 (491)
T 4gc0_A 473 ELEALWEPE 481 (491)
T ss_dssp HHGGGTC--
T ss_pred HHHHHhCCC
Confidence 999887664
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.2e-41 Score=323.45 Aligned_cols=390 Identities=15% Similarity=0.111 Sum_probs=283.0
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 011956 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (474)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 113 (474)
++..+......+++.+....+.....+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344566666777777777778778888899999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---
Q 011956 114 CIIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--- 186 (474)
Q Consensus 114 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l--- 186 (474)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999998775
Q ss_pred -h-hhHHHHHhHHHHHHHH-HHhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 011956 187 -N-WRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (474)
Q Consensus 187 -~-wr~~f~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (474)
+ ||+.|++.+++.++.. +.++++||+|+....+++.+.. . +.+.+ .++..++....++...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------N-DYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------C-C----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------c-ccccc---chhhhhcccccccchHHH
Confidence 7 9999999888877644 4456788887643221111100 0 00000 000000011111112456
Q ss_pred HhhHhhHHHHHHHHHHHHHHhhccchhhHhcHHHHHHH-cCCcc---hhHHHHHHHHHHHHHHHHHHHHhhc--CCccee
Q 011956 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLL 337 (474)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~ 337 (474)
.++++.++...+..++....... ...+.+.++++ .+.+. +.......++.+++.++.+++.||+ +||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYG----ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 67777777666666555554333 34445554444 34443 3677778889999999999999999 898877
Q ss_pred eehhhhHH-HHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHH
Q 011956 338 LVSAAGTC-LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL 416 (474)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 416 (474)
..+..+.. ++.+.+.... ..+........+..+.......+....+..|..|+++|+++.|+.+...++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMNP----------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHHHHHHHHTTSCC----------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 66655544 3333332210 113333333444444444455566678999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHhhh
Q 011956 417 -GSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVA 452 (474)
Q Consensus 417 -g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 452 (474)
|..++|.+.|.+.+. ++...+.+.+++.++..++..
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999994 444444555554444444433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.3e-38 Score=305.51 Aligned_cols=359 Identities=12% Similarity=0.078 Sum_probs=267.0
Q ss_pred HHHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q 011956 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 121 (474)
.++++..+..+++.....+.+|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444555566666677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---HHhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccch-----------
Q 011956 122 ---VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN----------- 187 (474)
Q Consensus 122 ---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~----------- 187 (474)
++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+.
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 889999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -------------------hhHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHH
Q 011956 188 -------------------WRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEI 246 (474)
Q Consensus 188 -------------------wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
||+.|++.+...++..+..++ .||+++.. ++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~----------------------- 242 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDA----------------------- 242 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCS-----------------------
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cccc-----------------------
Confidence 999998877766654443333 45554310 0000
Q ss_pred HHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccchhhHhc-HHHHHHHcCCcchhHHHHHHHHHHHHHHHHH
Q 011956 247 REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY-ASSIFISAGFSGSIGMIAMVVIQIPMTLLGV 325 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 325 (474)
+++..+.+++++++++..+...+..++..........+.+.| ....++......+.......++.+++.++.+
T Consensus 243 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 243 ------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp ------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 011122345677777877777776666655544444444444 3322221112234677777889999999999
Q ss_pred HHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhh
Q 011956 326 LLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGS 405 (474)
Q Consensus 326 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 405 (474)
++.||++||+.+..+..+..++.+.+... ......... .+.+.+.....+..+++..|.+|++ ++.
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAFA------------GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 99999999998888777776666655542 222233333 3344445556777888888999865 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHH
Q 011956 406 AGSLVTLVSWLGSWIISFTFNFLMKWSS-TGTFFAFSAICSLT 447 (474)
Q Consensus 406 ~~g~~~~~~~~g~~i~~~i~g~~~~~~~-~~~~~~~~~~~~~~ 447 (474)
+.++.. ...+|+.++|.+.|.+.|..+ +...+.+..++.+.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888877 677999999999999999433 33333333333333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1e-34 Score=282.59 Aligned_cols=392 Identities=16% Similarity=0.077 Sum_probs=252.6
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 011956 67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (474)
Q Consensus 67 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (474)
+|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3499999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCc--chhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhcc-CCCh----h
Q 011956 146 YVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI-PESP----R 214 (474)
Q Consensus 146 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~-~~~p----~ 214 (474)
+...+++.|++|+++ |++++++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. ++.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999998 67788889999999999999999886 89999999877766655444322 2211 0
Q ss_pred HHHhcCChhHHHHHHHH----------------H-hCCCcchHHHHHHHHH------HHHHHhhccchhHHHHhhHhhHH
Q 011956 215 WLAKTGKGIESEAALQR----------------L-RGADADISEEAAEIRE------YTETLERLSEGGILELFQRKYAH 271 (474)
Q Consensus 215 ~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 271 (474)
....+.+.++.++..+. . ...+.+.......... ......+.+.....+..+.....
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 00011112222221111 1 1111111000000000 00000000000001111111122
Q ss_pred HHHHHHHHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceee-----ehhhhHHH
Q 011956 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL-----VSAAGTCL 346 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~ 346 (474)
.......+...........++.|.....+......+.......++.+++.++.+++.||++||+... .+..+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 3333333334443334444444544433333344567777888888889999999999999987765 45555555
Q ss_pred HHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011956 347 GCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFN 426 (474)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g 426 (474)
+.+.+......... ....+........++.+.......+..+.++.|.+|++.|+++.|+.+...++|..++|.+.+
T Consensus 367 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 367 SFLLMAIPGALYGT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT 443 (491)
T ss_dssp HHTTTHHHHHHCCC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444332211100 001233334444444555555667778899999999999999999999999999999999999
Q ss_pred HHHhhhccchhHHHHHHHHHHHHhhheeCcCCCCC
Q 011956 427 FLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGR 461 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (474)
.+.+.++...+...+.++.+..++.++..++.+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 444 LYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp GGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886666667777777666666666555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3e-36 Score=282.87 Aligned_cols=358 Identities=15% Similarity=0.062 Sum_probs=273.6
Q ss_pred HHHHHHHhhccccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 011956 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 122 (474)
++++..+...++.+...+.+|.+.+++|.++++.+++.+.+.++..++++++|+++||+|||+++..+..+.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34455566666677778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHhHHH
Q 011956 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (474)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~ 198 (474)
+++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 899999998888
Q ss_pred HHHHHH-HhhccCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHH
Q 011956 199 CLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (474)
Q Consensus 199 ~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (474)
.++..+ ..+++||+++...+ +++.+.++++.+++|..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDAP-----------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTCC-----------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCcc-----------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 777665 45667887542100 011233456777888888877777
Q ss_pred HHHHHHhhccchhhHhcHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhh-HHHHHHHHHHHhh
Q 011956 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG-TCLGCLLAALSFL 356 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 356 (474)
++............+.|....++......+.......++.+++.++.+++.||.+++ ...+... ...+...+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 777776666667778887776665555556777788888899999999999988762 1222221 1111111111100
Q ss_pred hcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 011956 357 FQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGT 436 (474)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~~~~~~ 436 (474)
. ..+.+......++.+.......+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+.+.+..
T Consensus 287 ~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 287 G--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred c--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 0 1122333333333444444567777899999998 899999999999999999999999999988555555
Q ss_pred hHHHHHHHHH
Q 011956 437 FFAFSAICSL 446 (474)
Q Consensus 437 ~~~~~~~~~~ 446 (474)
.+....+..+
T Consensus 358 ~~~~~~~~~~ 367 (375)
T 2gfp_A 358 GLLMTLMGLL 367 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544443333
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.7e-30 Score=252.42 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=132.5
Q ss_pred ccccccC------CChhhHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHH
Q 011956 64 GITNDLG------LSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRL 135 (474)
Q Consensus 64 ~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 135 (474)
.+.+++| .+..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ |++.++++|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4677888 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcCCCCcchhHHHH---HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
++|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+ +||+.|++.++..++..+..++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 8899999999999998876 8999999988877765555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=3.6e-32 Score=258.25 Aligned_cols=366 Identities=12% Similarity=0.068 Sum_probs=224.7
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH---HHHHhhhH-HHHHHH
Q 011956 59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV---IIVFSKAA-WWLDLG 133 (474)
Q Consensus 59 ~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~l~~~ 133 (474)
.+.+|. +++++|.++.+.|++.+.+.++..++++++|+++||+|||+++.++..+++++.. .+.+++.. ..++..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 5677999999999999999999999999999999999999999998887765322 12233222 123456
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCC--CcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
+.+.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555555555543 3456667777777788888888888776 7999999877776555555555
Q ss_pred cCCChhHHHhcCChhHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHHhhHhhHHHHHHHHHHHHHHhhccc
Q 011956 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (474)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (474)
.+|+++. +.+.++.. .... ++.+..+++++++++..+...+..+..........
T Consensus 187 ~~~~~~~---~~~~~~~~------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 187 AKTDAPS---SATVANAV------GANH-----------------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp SCCCCSC---SSCSSSSS------SSCC-----------------CCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccc---cccccccc------cccc-----------------ccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 4443311 00000000 0000 00111234556666666555444333332222222
Q ss_pred hhhHhcHHHHHHHc---CCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccc
Q 011956 289 NGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIK 365 (474)
Q Consensus 289 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (474)
...+.|.+..++.. ....+.......++.+++.++.++++||++||+.+..+..+.+++.+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------------ 308 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------------ 308 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33444444332211 111134555666778888999999999999999877666665555444332
Q ss_pred cchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHH
Q 011956 366 ATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAI 443 (474)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~ 443 (474)
..+...+.....+.+.......+..+.+..|.+|++.|+++.++. +....+|+.++|.+.|.+.+. ++...+.+.+++
T Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 309 ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 112222222222222222223344568999999999999999994 888899999999999999883 444445555555
Q ss_pred HHHHHHhhheeCcCCCCCC
Q 011956 444 CSLTVLFVAKLVPETKGRT 462 (474)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (474)
.++..++.++..+|+++.+
T Consensus 389 ~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHhhhcCCCchH
Confidence 5555555555556554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=1.1e-13 Score=132.66 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=127.8
Q ss_pred cccccccc-ccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc--CchhHHHHHHHHHH-HHHHHHHHh--hhHHHHHHH
Q 011956 60 PAQSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGFSDIVCI-IGWVIIVFS--KAAWWLDLG 133 (474)
Q Consensus 60 ~~~~~i~~-~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~ 133 (474)
...|.+.+ .+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 34444444 4899999999999999999999999999999999 99999988877776 666666665 367778888
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHH-HHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHhhc
Q 011956 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (474)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 208 (474)
.++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+ ||+..|++.++..++..+..++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988898899999999999999999999999999 999999998876 8999999988887776665554
Q ss_pred c
Q 011956 209 I 209 (474)
Q Consensus 209 ~ 209 (474)
+
T Consensus 433 ~ 433 (451)
T 1pw4_A 433 V 433 (451)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=1.1e-12 Score=124.04 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=119.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011956 72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY 151 (474)
Q Consensus 72 s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 151 (474)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999999998888887777778888888888888888877777778899
Q ss_pred hhhcCCCCcchhHHHH-HHHHHHHHHHHHHHHhccc----hhhHHHHHhHHHHHHHHHHh-hccCCCh
Q 011956 152 IAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESP 213 (474)
Q Consensus 152 i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~-~~~~~~p 213 (474)
+.|.+|++.|+++.++ ++....+|..++|.+++.+ |++..|.+.+++.++..+.. ...||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 4778889999999998876 78888888888777765543 4456554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=2.6e-12 Score=122.47 Aligned_cols=142 Identities=12% Similarity=0.012 Sum_probs=118.7
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (474)
+.+.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 445569999999999999999999999999999999999999999999999999998888887765544 8889999999
Q ss_pred hhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----h-hhHHHHHhHHHHHHHHHHhhcc
Q 011956 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGLCFI 209 (474)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----~-wr~~f~~~~~~~~~~~~~~~~~ 209 (474)
.+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ | ++..|++.++..++..+..+..
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999866 888888777 5568999999988877 6 8888887665555444443333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.31 E-value=6.7e-12 Score=121.58 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=118.2
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHH-----HHHHHHHHHHHHHHHhh---------hHHHH
Q 011956 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-----FSDIVCIIGWVIIVFSK---------AAWWL 130 (474)
Q Consensus 65 i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l 130 (474)
..+.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++.++.. +.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 34456666677888889999999999999999999999987665 77777777777666643 67778
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHhHHHHHHHHHHhh
Q 011956 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLC 207 (474)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~ 207 (474)
.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|++.+...++..+..+
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999887 667788887777776554443
Q ss_pred -ccCCC
Q 011956 208 -FIPES 212 (474)
Q Consensus 208 -~~~~~ 212 (474)
+.++.
T Consensus 470 ~~~~~~ 475 (491)
T 4aps_A 470 FLSKRI 475 (491)
T ss_dssp HC----
T ss_pred HHHHHH
Confidence 33433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=7.9e-12 Score=116.51 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=116.2
Q ss_pred HhcHHHHHHHcCCcch---hHHHHHHHHHHHHHHHHHHHHhhcCCcceeeehhhhHHHHHHHHHHHhhhcccccccccch
Q 011956 292 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (474)
....+.+.++.+.+.. .......++..++.+..|+++||+|||+.+..+..+..++.+..... ++
T Consensus 20 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------~~ 87 (375)
T 2gfp_A 20 IPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------------SS 87 (375)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------------cc
Confidence 3344555555555443 67777888899999999999999999999999888888887777663 33
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHH
Q 011956 369 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLT 447 (474)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~~~~~-~~~~~~~~~~~~~~~~ 447 (474)
...+....++.+.......+....++.|..|+++|+++.++.+....+|..++|.+.+.+.+. ++...+.+.+....+.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 444444555555555566777789999999999999999999999999999999999998884 4444555555555555
Q ss_pred HHhhheeCcCCCC
Q 011956 448 VLFVAKLVPETKG 460 (474)
Q Consensus 448 ~~~~~~~~~~~~~ 460 (474)
.+...+..||+++
T Consensus 168 ~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 168 TFSMARWMPETRP 180 (375)
T ss_dssp HCCCCCSSCCCST
T ss_pred HHHHHHHCcccCC
Confidence 5545555666543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.26 E-value=3e-11 Score=118.04 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHhhccchhhHhcHHHHHH------HcCCcchhHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeehh
Q 011956 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI------SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSA 341 (474)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~ 341 (474)
.++......++.....+.....++.|+...++ ......+.......++..++.++.|+++||+ |||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444444444444443334444444443333 2333445778888889999999999999999 9999998888
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHhccccchhhhhhcccCCCCchhhHHHH---HHHHHHHHH
Q 011956 342 AGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL---VTLVSWLGS 418 (474)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~ 418 (474)
++..++.++..+. ..+...+....++.+.......+...+++.|.+|+++|+.+.+. .+...++|.
T Consensus 93 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 93 LIYCVGHAFLAIF-----------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHHHHT-----------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 8877777776652 21344444445555555566678888999999999999876666 889999999
Q ss_pred HHHHHHHHHHHh-hhccchhHHHHHHHHHHHH
Q 011956 419 WIISFTFNFLMK-WSSTGTFFAFSAICSLTVL 449 (474)
Q Consensus 419 ~i~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~ 449 (474)
.++|.+.+.+.+ .++...+.+.+.+.++..+
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999988 4444445544444443333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.22 E-value=1.7e-10 Score=111.66 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=112.1
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhh-----hHHHHHH-HH
Q 011956 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-----AAWWLDL-GR 134 (474)
Q Consensus 61 ~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~r 134 (474)
..|.+.++.+.+..+.........+...++.++++++.||+|||+.++.+....+++.+..+... +...+.. .-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34557778888888888888888899999999999999999999999999888888777665431 1222221 12
Q ss_pred HHHHhhhhhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccc----------hhhHHHHHhHHHHHHHHH
Q 011956 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI 204 (474)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l----------~wr~~f~~~~~~~~~~~~ 204 (474)
+..+.+. ...+....+.+|.+|.+.|++++++......+|..+++.+...+ ++.+.|++.++++++..+
T Consensus 379 ~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 379 YVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 2222222 24467788999999999999999999998888888876654332 455678888887777554
Q ss_pred -HhhccCCCh
Q 011956 205 -GLCFIPESP 213 (474)
Q Consensus 205 -~~~~~~~~p 213 (474)
.++++||+.
T Consensus 458 ~~~~~~PETk 467 (491)
T 4gc0_A 458 FMWKFVPETK 467 (491)
T ss_dssp HHHHHCCCCT
T ss_pred HHHheecCCC
Confidence 457799984
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.95 E-value=2.7 Score=19.73 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.4
Q ss_pred HHHHhhhccCchhH
Q 011956 93 MSGKIADYIGRRGT 106 (474)
Q Consensus 93 ~~G~l~dr~Grr~~ 106 (474)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=55.26 E-value=1.3e+02 Score=27.63 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhhhcCCCCcchhHHHHHHHHHHHHHH
Q 011956 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS 177 (474)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 177 (474)
+.............+..++|.+...+.+....+-.+
T Consensus 139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 174 (460)
T 3mkt_A 139 AVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNI 174 (460)
T ss_dssp HHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 333334444556666666666655555554444433
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.53 E-value=1.8e+02 Score=23.31 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCch
Q 011956 80 GSILTIGAMIGAIMSGKIADYIGRR 104 (474)
Q Consensus 80 ~s~~~l~~~~~~~~~G~l~dr~Grr 104 (474)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457788888888999999987543
No 18
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=25.03 E-value=2.5e+02 Score=25.50 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhcc
Q 011956 88 MIGAIMSGKIADYI 101 (474)
Q Consensus 88 ~~~~~~~G~l~dr~ 101 (474)
.........++.++
T Consensus 54 ~~~a~~~~el~~~~ 67 (445)
T 3l1l_A 54 LGLSMVYAKMSFLD 67 (445)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccC
Confidence 34444445555544
Done!