BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011957
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYA 233
G + G +Y LGG+ + +V +YDP W+ V+ M+ R+ + + +LN+ +Y
Sbjct: 152 GAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYV 211
Query: 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY 293
VGG G L S E ++ RT W+ + SM + V G +
Sbjct: 212 VGGFD----GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV---------------GATVL 252
Query: 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMG 332
RGRL+ + E YDP ++SW E+ MG
Sbjct: 253 RGRLYAIAGYDGNSLLSSI--ECYDPIIDSW-EVVTSMG 288
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGG 243
+YV GGF + ++ RYDP ++ WS + M R + + + + +Y +GG G
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD----G 170
Query: 244 LTPLQSAEVFDPRTGLWSEILSMPFSKA 271
L L S E +DP TG W+ + M ++
Sbjct: 171 LNILNSVEKYDPHTGHWTNVTPMATKRS 198
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 45/245 (18%)
Query: 184 LYVLGGF-SRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPG 242
L V+GGF S+ + V +YDP WS + S++ R Y L++++Y +GG
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD---- 72
Query: 243 GLTPLQSAEVFD---PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFV 299
G + L S E D G+W + M + T L D++ ++ G R +
Sbjct: 73 GRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIY-VSGGFDGSRRHTSM 130
Query: 300 PQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG 359
E YDP+++ W +G+ R+ G L + G +Y L
Sbjct: 131 ---------------ERYDPNIDQWSM----LGDMQTARE-GAGL-VVASGVIYCLGGYD 169
Query: 360 ALDS-AKIKVYDYHDDTWKVVV--------GDVPLPNFTDSESPYLLAGLLGKLHVITND 410
L+ ++ YD H W V V L N + Y++ G G H+ + +
Sbjct: 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLN----DHIYVVGGFDGTAHLSSVE 225
Query: 411 ANHNI 415
A +NI
Sbjct: 226 A-YNI 229
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 96 LYILTKVEDDKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWN----VLGSTI 151
L IL VE DP G W + PM + +R A + + N V+G
Sbjct: 171 LNILNSVE-------KYDPHTGHWTNVTPMAT-------KRSGAGVALLNDHIYVVGGFD 216
Query: 152 KIADL--IRGWLGKKDA---LDRMGFCGCSIGA--VDGCLYVLGGFSRALAMRNVWRYDP 204
A L + + + D+ + M C +GA + G LY + G+ + ++ YDP
Sbjct: 217 GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276
Query: 205 VLNAWSEVSSMSVGRAYSKIGIL 227
++++W V+SM R + + +L
Sbjct: 277 IIDSWEVVTSMGTQRCDAGVCVL 299
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 84/208 (40%), Gaps = 34/208 (16%)
Query: 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGG 236
+G +DG +Y +GG + +V RY+P + W V+ M R + +LN LYAVGG
Sbjct: 110 VGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 169
Query: 237 VTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGR 296
G L SAE + P W I M + + +L Y G+
Sbjct: 170 FD----GTNRLNSAECYYPERNEWRMITPM-----NTIRSGAGVCVLHNCIYAAGGYDGQ 220
Query: 297 LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV-EGELYAL 355
+ E YD + +W + P+R + L ITV +G++Y L
Sbjct: 221 DQLNSV------------ERYDVETETWTFVA-------PMRHHRSALGITVHQGKIYVL 261
Query: 356 ---DPSGALDSAKIKVYDYHDDTWKVVV 380
D LDS ++ YD DTW V
Sbjct: 262 GGYDGHTFLDS--VECYDPDSDTWSEVT 287
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYA 233
G + ++ LY +GGF + + Y P N W ++ M+ R+ + + +L+N +YA
Sbjct: 154 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYA 213
Query: 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY 293
GG G L S E +D T W+ + M ++ A G++ +
Sbjct: 214 AGGYD----GQDQLNSVERYDVETETWTFVAPMRHHRS---------------ALGITVH 254
Query: 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVE 349
+G+++V F V E YDPD ++W E+ M G ++G +++T+E
Sbjct: 255 QGKIYVLGGYDGHTFLDSV--ECYDPDSDTWSEV-TRMTSG----RSGVGVAVTME 303
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAV 234
C V +Y GG+ R ++ + Y+P +W ++ + V R+ ++ LYAV
Sbjct: 11 CRAPKVGRLIYTAGGYFRQ-SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAV 69
Query: 235 GGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273
GG P G T + + ++P T WS SM + ++
Sbjct: 70 GGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRI 108
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 84/208 (40%), Gaps = 34/208 (16%)
Query: 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGG 236
+G +DG +Y +GG + +V RY+P + W V+ M R + +LN LYAVGG
Sbjct: 111 VGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 170
Query: 237 VTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGR 296
G L SAE + P W I M + + +L Y G+
Sbjct: 171 FD----GTNRLNSAECYYPERNEWRMITPM-----NTIRSGAGVCVLHNCIYAAGGYDGQ 221
Query: 297 LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV-EGELYAL 355
+ E YD + +W + P+R + L ITV +G++Y L
Sbjct: 222 DQLNSV------------ERYDVETETWTFVA-------PMRHHRSALGITVHQGKIYVL 262
Query: 356 ---DPSGALDSAKIKVYDYHDDTWKVVV 380
D LDS ++ YD DTW V
Sbjct: 263 GGYDGHTFLDS--VECYDPDSDTWSEVT 288
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYA 233
G + ++ LY +GGF + + Y P N W ++ M+ R+ + + +L+N +YA
Sbjct: 155 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYA 214
Query: 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY 293
GG G L S E +D T W+ + M ++ A G++ +
Sbjct: 215 AGGYD----GQDQLNSVERYDVETETWTFVAPMRHHRS---------------ALGITVH 255
Query: 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVE 349
+G+++V F V E YDPD ++W E+ M G ++G +++T+E
Sbjct: 256 QGKIYVLGGYDGHTFLDSV--ECYDPDSDTWSEV-TRMTSG----RSGVGVAVTME 304
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAV 234
C V +Y GG+ R ++ + Y+P +W ++ + V R+ ++ LYAV
Sbjct: 12 CRAPKVGRLIYTAGGYFRQ-SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAV 70
Query: 235 GGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273
GG P G T + + ++P T WS SM + ++
Sbjct: 71 GGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRI 109
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 38/183 (20%)
Query: 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGG 236
+G +DG +Y +GG + +V RY+P + W V+ M R + +LN LYAVGG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 237 VTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ----VLPTAFLA-------DLLKP 285
G L SAE + P W I +M ++ VL A D L
Sbjct: 177 FD----GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS 232
Query: 286 I---------------------ATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324
+ A G++ ++GR++V F V E YDPD ++W
Sbjct: 233 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSV--ECYDPDTDTW 290
Query: 325 VEM 327
E+
Sbjct: 291 SEV 293
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYA 233
G + + C+Y GG+ + +V RYD W+ V+ M R+ I + ++Y
Sbjct: 208 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 267
Query: 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273
+GG G T L S E +DP T WSE+ M ++ V
Sbjct: 268 LGGYD----GHTFLDSVECYDPDTDTWSEVTRMTSGRSGV 303
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 107/278 (38%), Gaps = 77/278 (27%)
Query: 148 GSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRA----LAMRNVWRYD 203
G+ +++ADL + R G GC +G G LY +GG + + + Y+
Sbjct: 49 GTWLRLADL---------QVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 204 PVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEI 263
P+ N WS + MSV R +G+++ +YAVGG G S E ++P W +
Sbjct: 97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSH----GCIHHNSVERYEPERDEWHLV 152
Query: 264 LSMPFSKAQVLPTAFLADLLKPIA------------------------TGMSSYR---GR 296
M ++ + A L LL + T M++ R G
Sbjct: 153 APM-LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV 211
Query: 297 LFVPQSLYFWPFFVDVGG----------EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI 346
+ +Y GG E YD + +W + P++ + L I
Sbjct: 212 CVLHNCIYA------AGGYDGQDQLNSVERYDVETETWTFVA-------PMKHRRSALGI 258
Query: 347 TV-EGELYAL---DPSGALDSAKIKVYDYHDDTWKVVV 380
TV +G +Y L D LDS ++ YD DTW V
Sbjct: 259 TVHQGRIYVLGGYDGHTFLDS--VECYDPDTDTWSEVT 294
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGG 243
+Y GG+ R ++ + Y+P W ++ + V R+ ++ LYAVGG P G
Sbjct: 27 IYTAGGYFRQ-SLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 244 LTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273
T + + ++P T WS M + ++
Sbjct: 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRI 115
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 38/183 (20%)
Query: 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGG 236
+G +DG +Y +GG + +V RY+P + W V+ M R + +LN LYAVGG
Sbjct: 118 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 177
Query: 237 VTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ----VLPTAFLA-------DLLKP 285
G L SAE + P W I +M ++ VL A D L
Sbjct: 178 FD----GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS 233
Query: 286 I---------------------ATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324
+ A G++ ++GR++V F V E YDPD ++W
Sbjct: 234 VERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSV--ECYDPDTDTW 291
Query: 325 VEM 327
E+
Sbjct: 292 SEV 294
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYA 233
G + + C+Y GG+ + +V RYD W+ V+ M R+ I + ++Y
Sbjct: 209 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 268
Query: 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273
+GG G T L S E +DP T WSE+ M ++ V
Sbjct: 269 LGGYD----GHTFLDSVECYDPDTDTWSEVTRMTSGRSGV 304
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 107/278 (38%), Gaps = 77/278 (27%)
Query: 148 GSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRA----LAMRNVWRYD 203
G+ +++ADL + R G GC +G G LY +GG + + + Y+
Sbjct: 50 GTWLRLADL---------QVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDCYN 97
Query: 204 PVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEI 263
P+ N WS + MSV R +G+++ +YAVGG G S E ++P W +
Sbjct: 98 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSH----GCIHHNSVERYEPERDEWHLV 153
Query: 264 LSMPFSKAQVLPTAFLADLLKPIA------------------------TGMSSYR---GR 296
M ++ + A L LL + T M++ R G
Sbjct: 154 APM-LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV 212
Query: 297 LFVPQSLYFWPFFVDVGG----------EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI 346
+ +Y GG E YD + +W + P++ + L I
Sbjct: 213 CVLHNCIYA------AGGYDGQDQLNSVERYDVETETWTFVA-------PMKHRRSALGI 259
Query: 347 TV-EGELYAL---DPSGALDSAKIKVYDYHDDTWKVVV 380
TV +G +Y L D LDS ++ YD DTW V
Sbjct: 260 TVHQGRIYVLGGYDGHTFLDS--VECYDPDTDTWSEVT 295
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGG 243
+Y GG+ R ++ + Y+P W ++ + V R+ ++ LYAVGG P G
Sbjct: 28 IYTAGGYFRQ-SLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 86
Query: 244 LTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273
T + + ++P T WS M + ++
Sbjct: 87 NTDSSALDCYNPMTNQWSPCAPMSVPRNRI 116
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 95/241 (39%), Gaps = 47/241 (19%)
Query: 175 CSIGAV--DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLY 232
C G V G ++ +GGF+ +L +R V YDPV + W+ V++M R+ +LN LY
Sbjct: 53 CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLY 112
Query: 233 AVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKA--------------------- 271
AVGG G T L S E ++ ++ W + M ++
Sbjct: 113 AVGGFD----GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS 168
Query: 272 -QVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGG----------EVYDPD 320
Q L T + T ++ R VGG EVYDP
Sbjct: 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT 228
Query: 321 VNSWVEMP-VGMGEGWPVRQAGTKLSITVEGELYAL-DPSGALDSAKIKVYDYHDDTWKV 378
N+W ++ + M R AG V G LY + G+ + A ++ Y+ D W V
Sbjct: 229 TNAWRQVADMNMCR----RNAGV---CAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281
Query: 379 V 379
V
Sbjct: 282 V 282
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYA 233
G +G ++ LY +GG L ++V YDP NAW +V+ M++ R + + +N LY
Sbjct: 197 GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYV 256
Query: 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILS 265
VG G G L S E ++P T W+ + S
Sbjct: 257 VG----GDDGSCNLASVEYYNPTTDKWTVVSS 284
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGG 243
L V+ G A+R+V YD W +V+ + R + + + ++AVGG G
Sbjct: 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFN----G 72
Query: 244 LTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPI-----ATGMSS 292
+++ + +DP W+ + +M + L A L LL + +TG+SS
Sbjct: 73 SLRVRTVDSYDPVKDQWTSVANMR-DRRSTLGAAVLNGLLYAVGGFDGSTGLSS 125
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGG 236
+G +DG +Y +GG + +V RY+P + W V+ R + +LN LYAVGG
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGG 176
Query: 237 VTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ----VLPTAFLA-------DLLKP 285
G L SAE + P W I + ++ VL A D L
Sbjct: 177 FD----GTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS 232
Query: 286 I---------------------ATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324
+ A G++ ++GR++V F V E YDPD ++W
Sbjct: 233 VERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSV--ECYDPDTDTW 290
Query: 325 VEM 327
E+
Sbjct: 291 SEV 293
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 101/274 (36%), Gaps = 69/274 (25%)
Query: 148 GSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRA----LAMRNVWRYD 203
G+ +++ADL + R G GC +G G LY +GG + + + Y+
Sbjct: 49 GTWLRLADL---------QVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 204 PVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEI 263
P N WS + SV R +G+++ +YAVGG G S E ++P W +
Sbjct: 97 PXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSH----GCIHHNSVERYEPERDEW-HL 151
Query: 264 LSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLY------------------- 304
++ ++ + A L LL A G RL + Y
Sbjct: 152 VAPXLTRRIGVGVAVLNRLL--YAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGA 209
Query: 305 ----FWPFFVDVGG----------EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV-E 349
GG E YD + +W + P + + L ITV +
Sbjct: 210 GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA-------PXKHRRSALGITVHQ 262
Query: 350 GELYAL---DPSGALDSAKIKVYDYHDDTWKVVV 380
G +Y L D LDS ++ YD DTW V
Sbjct: 263 GRIYVLGGYDGHTFLDS--VECYDPDTDTWSEVT 294
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGG 243
+Y GG+ R ++ + Y+P W ++ + V R+ ++ LYAVGG P G
Sbjct: 27 IYTAGGYFRQ-SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 244 LTPLQSAEVFDPRTGLWS 261
T + + ++P T WS
Sbjct: 86 NTDSSALDCYNPXTNQWS 103
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI 226
G +YVLGG+ + +V YDP + WSEV+ + GR S +G+
Sbjct: 263 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTSGR--SGVGV 305
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 21/221 (9%)
Query: 96 LYILTKVEDDKLS--WHALDPLAGRWQRLPPMPS--IIFEDELRRGSAAIRMWNVLGSTI 151
LY+ + +D L + LD ++ W LPP+PS +F G +++ V G +
Sbjct: 65 LYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF----GLGEVDDKIYVVAGKDL 120
Query: 152 KIADLIRGWLGKKDALDR--------MGFCGCSIGAVDGCLYVLGGFSRALAMRN-VWRY 202
+ + L + + G ++ + +G +Y LGG + N V+ Y
Sbjct: 121 QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIY 180
Query: 203 DPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSE 262
+P W +++ M R+ + I K+ GGVT GL+ S E FD +T W
Sbjct: 181 NPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE--DGLSA--SVEAFDLKTNKWEV 236
Query: 263 ILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSL 303
+ P ++ + + L M + F P +
Sbjct: 237 MTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV 277
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 173 CGCSIGAVDGCLYVLGG--FSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNK 230
C +G VD +YV+ G ++ +V YDPV WSEV ++ + + N
Sbjct: 101 CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGM 160
Query: 231 LYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGM 290
+Y +GG T +++P+ G W ++ M ++ G+
Sbjct: 161 IYCLGGKTDDK---KCTNRVFIYNPKKGDWKDLAPMKTPRSMF---------------GV 202
Query: 291 SSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEG 350
+ ++G++ + + V E +D N W M +P ++ L +++ G
Sbjct: 203 AIHKGKIVIAGGVTEDGLSASV--EAFDLKTNKWEVM-----TEFPQERSSISL-VSLAG 254
Query: 351 ELYAL 355
LYA+
Sbjct: 255 SLYAI 259
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 175 CSIGAVD--GCLYVLGGF------SRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI 226
CS G V+ G +YV GG R L V YDP W+E+ M R +
Sbjct: 141 CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEV--YDPATETWTELCPMIEARKNHGLVF 198
Query: 227 LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTA 277
+ +K++AVG G GL L + E +D + W + MP+ V A
Sbjct: 199 VKDKIFAVG----GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 103 EDDKLSWHAL--DPLAGRWQRLPPMPS--IIFEDELRRGSAAIRMWNVLGSTIK------ 152
++D +S + L D L W +PP+PS +F G A ++ V G IK
Sbjct: 61 KEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF----GLGEALNSIYVVGGREIKDGERCL 116
Query: 153 ----IADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGF-SRALAMRNVWRYDPVLN 207
D + G+ D L + + + +D +YV+GG S + + YDP
Sbjct: 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMD-LVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 208 AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMP 267
W E++ M R+ + + ++ GVT GLT SAEV+ W+ + P
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTD--TGLT--SSAEVYSITDNKWAPFEAFP 231
Query: 268 FSKAQV 273
++ +
Sbjct: 232 QERSSL 237
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 180 VDGCLYVLGGFSR-----ALAMRNVWRYDPVLNAWSEVSSMS-VGRAYSKIGILNNKLYA 233
+DG LYV GG + +V +Y+P N+W ++ S + G A + N K Y
Sbjct: 64 IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAPXGXAGHVTFVHNGKAYV 123
Query: 234 VGGVTR 239
GGV +
Sbjct: 124 TGGVNQ 129
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 169 RMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGR-AYSKIGIL 227
RM +I + L + G + + + W +D WS + S+S R +S +
Sbjct: 440 RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP 499
Query: 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257
+ + +GGVT GP L + E+F T
Sbjct: 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 351 ELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITND 410
E+ + DP+ AL S V D +DD +VV D P+ + LLA LG L
Sbjct: 107 EMESDDPANALPSTDKAVSD-NDDMMILVVDDHPI-------NRRLLADQLGSLGYQCKT 158
Query: 411 ANHNIAVLQADVKNHF 426
AN + L KNH
Sbjct: 159 ANDGVDALNVLSKNHI 174
>pdb|3K8P|D Chain D, Structural Basis For Vesicle Tethering By The Dsl1 Complex
Length = 709
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 6 SRNTSRVGATKPSEALQYETCKRQRLLSSFFDESPRLIPSLPDEISL 52
S N +R A KPS L+Y C ++S+ + +PRL LP SL
Sbjct: 504 SHNGARDTAFKPSNILEYRDCPLD-IISNLLELNPRLYKDLPTTKSL 549
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,401,464
Number of Sequences: 62578
Number of extensions: 614063
Number of successful extensions: 1348
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 53
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)