Query 011957
Match_columns 474
No_of_seqs 412 out of 3043
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.5E-43 1.2E-47 360.9 33.5 316 43-458 228-555 (571)
2 PHA02713 hypothetical protein; 100.0 1.9E-40 4.1E-45 343.6 30.1 245 94-412 258-523 (557)
3 KOG4441 Proteins containing BT 100.0 4.1E-38 9E-43 324.7 24.3 240 71-380 311-554 (571)
4 PLN02153 epithiospecifier prot 100.0 6.3E-37 1.4E-41 301.4 28.9 284 72-413 8-326 (341)
5 TIGR03548 mutarot_permut cycli 100.0 2.6E-36 5.7E-41 294.8 29.4 253 90-413 10-315 (323)
6 PLN02193 nitrile-specifier pro 100.0 6.2E-36 1.3E-40 305.0 29.2 279 71-413 151-455 (470)
7 PLN02193 nitrile-specifier pro 100.0 2.3E-35 4.9E-40 300.9 32.8 253 93-412 120-388 (470)
8 PLN02153 epithiospecifier prot 100.0 1.4E-35 2.9E-40 291.9 29.5 217 168-411 19-261 (341)
9 PHA02713 hypothetical protein; 100.0 2.1E-36 4.6E-41 313.5 21.1 226 88-380 298-541 (557)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 5.6E-35 1.2E-39 288.5 28.5 253 91-413 15-333 (346)
11 PHA03098 kelch-like protein; P 100.0 1.9E-34 4.1E-39 301.0 28.3 209 173-413 286-499 (534)
12 PRK14131 N-acetylneuraminic ac 100.0 3.3E-34 7.1E-39 285.2 27.8 264 90-420 35-362 (376)
13 PHA02790 Kelch-like protein; P 100.0 6.8E-34 1.5E-38 290.7 26.8 208 177-430 267-474 (480)
14 PHA02790 Kelch-like protein; P 100.0 1.9E-33 4.1E-38 287.5 26.0 206 92-380 270-478 (480)
15 PHA03098 kelch-like protein; P 100.0 5.4E-33 1.2E-37 290.0 26.2 223 89-380 290-519 (534)
16 KOG4693 Uncharacterized conser 100.0 2.3E-33 4.9E-38 247.3 18.9 255 172-472 14-300 (392)
17 KOG4693 Uncharacterized conser 100.0 1.5E-32 3.2E-37 242.2 21.0 268 92-410 22-311 (392)
18 TIGR03548 mutarot_permut cycli 100.0 1E-31 2.2E-36 262.5 26.1 215 171-412 3-234 (323)
19 TIGR03547 muta_rot_YjhT mutatr 100.0 3.4E-31 7.3E-36 261.5 27.9 216 171-411 7-267 (346)
20 PRK14131 N-acetylneuraminic ac 100.0 3E-29 6.6E-34 249.6 25.8 216 172-412 29-290 (376)
21 KOG0379 Kelch repeat-containin 100.0 2.2E-26 4.9E-31 234.2 25.3 221 167-413 56-287 (482)
22 KOG0379 Kelch repeat-containin 99.9 4E-25 8.6E-30 225.0 24.0 255 80-399 55-326 (482)
23 KOG1230 Protein containing rep 99.9 5.6E-25 1.2E-29 205.3 18.7 225 166-412 61-318 (521)
24 KOG1230 Protein containing rep 99.9 1.5E-24 3.3E-29 202.4 17.8 267 43-379 33-347 (521)
25 KOG4152 Host cell transcriptio 99.9 8.3E-24 1.8E-28 201.9 16.8 281 72-413 18-344 (830)
26 KOG4152 Host cell transcriptio 99.9 2.2E-23 4.8E-28 199.0 17.6 266 168-471 29-329 (830)
27 COG3055 Uncharacterized protei 99.8 1.4E-16 2.9E-21 147.7 20.2 258 92-418 45-366 (381)
28 COG3055 Uncharacterized protei 99.5 1.2E-12 2.6E-17 121.8 17.1 212 175-411 40-295 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 2.6E-12 5.6E-17 88.3 6.3 49 171-219 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.2 1.5E-11 3.3E-16 84.4 5.9 50 218-270 1-50 (50)
31 KOG2437 Muskelin [Signal trans 99.2 9.7E-12 2.1E-16 119.8 5.2 190 204-413 236-459 (723)
32 KOG2437 Muskelin [Signal trans 99.1 3.9E-11 8.5E-16 115.7 4.4 182 169-359 258-457 (723)
33 PF01344 Kelch_1: Kelch motif; 99.1 1.5E-10 3.2E-15 78.5 4.4 46 171-216 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.1 2.6E-10 5.5E-15 77.3 5.3 47 218-267 1-47 (47)
35 PF13415 Kelch_3: Galactose ox 99.0 6.9E-10 1.5E-14 75.7 5.6 47 181-227 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 2.8E-09 6.1E-14 72.7 6.2 46 171-216 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 3.9E-09 8.6E-14 71.9 6.2 49 218-267 1-49 (49)
38 PF13418 Kelch_4: Galactose ox 98.9 1.9E-09 4E-14 73.7 4.2 47 171-217 1-49 (49)
39 smart00612 Kelch Kelch domain. 98.8 5.1E-09 1.1E-13 70.7 5.0 47 183-229 1-47 (47)
40 PF13418 Kelch_4: Galactose ox 98.8 7.8E-09 1.7E-13 70.6 5.0 47 218-267 1-48 (49)
41 TIGR01640 F_box_assoc_1 F-box 98.7 4.5E-06 9.8E-11 77.4 22.7 201 179-410 3-216 (230)
42 PF13415 Kelch_3: Galactose ox 98.7 3.6E-08 7.8E-13 67.2 5.7 43 228-272 1-43 (49)
43 PF07250 Glyoxal_oxid_N: Glyox 98.6 9E-07 1.9E-11 81.2 14.3 148 108-333 47-210 (243)
44 smart00612 Kelch Kelch domain. 98.6 4.9E-08 1.1E-12 65.8 4.6 39 230-272 1-39 (47)
45 PF12937 F-box-like: F-box-lik 98.5 6.3E-08 1.4E-12 65.3 2.9 42 43-84 1-42 (47)
46 PLN02772 guanylate kinase 98.5 7.3E-07 1.6E-11 86.8 11.2 83 169-257 22-109 (398)
47 TIGR01640 F_box_assoc_1 F-box 98.5 8E-05 1.7E-09 69.0 23.1 157 196-374 69-230 (230)
48 PF13854 Kelch_5: Kelch motif 98.4 9.1E-07 2E-11 57.9 5.4 39 169-207 2-42 (42)
49 PLN03215 ascorbic acid mannose 98.4 0.00018 3.9E-09 70.1 23.4 38 42-79 3-41 (373)
50 PF13854 Kelch_5: Kelch motif 98.3 1.1E-06 2.3E-11 57.6 5.2 42 215-258 1-42 (42)
51 smart00256 FBOX A Receptor for 98.3 9.5E-07 2.1E-11 57.5 3.4 39 46-84 1-39 (41)
52 PF00646 F-box: F-box domain; 98.2 2.9E-07 6.3E-12 62.4 0.5 44 42-85 2-45 (48)
53 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00023 4.9E-09 65.5 17.7 154 197-385 46-210 (243)
54 PLN02772 guanylate kinase 98.1 1.6E-05 3.4E-10 77.6 10.7 82 338-423 24-108 (398)
55 PF07893 DUF1668: Protein of u 98.0 0.0038 8.2E-08 61.3 23.6 129 180-329 75-216 (342)
56 KOG0281 Beta-TrCP (transducin 97.8 0.00061 1.3E-08 63.8 13.5 42 43-84 75-120 (499)
57 PRK11138 outer membrane biogen 97.4 0.07 1.5E-06 53.7 24.1 177 178-409 157-343 (394)
58 PRK11138 outer membrane biogen 97.2 0.18 4E-06 50.7 23.7 200 176-432 64-282 (394)
59 PF03089 RAG2: Recombination a 97.0 0.064 1.4E-06 49.5 16.8 106 184-304 40-174 (337)
60 PF13360 PQQ_2: PQQ-like domai 97.0 0.28 6E-06 45.2 22.3 155 177-377 72-237 (238)
61 PF07893 DUF1668: Protein of u 96.9 0.024 5.3E-07 55.6 14.7 122 92-269 75-220 (342)
62 KOG2120 SCF ubiquitin ligase, 96.8 0.00081 1.8E-08 62.4 2.9 42 42-83 97-138 (419)
63 cd00094 HX Hemopexin-like repe 96.6 0.19 4.2E-06 45.0 16.5 156 177-375 12-178 (194)
64 TIGR03300 assembly_YfgL outer 96.5 0.78 1.7E-05 45.7 21.8 168 177-409 186-369 (377)
65 TIGR03300 assembly_YfgL outer 96.4 1.2 2.5E-05 44.5 24.6 154 178-378 142-305 (377)
66 PF13360 PQQ_2: PQQ-like domai 96.2 1 2.2E-05 41.4 24.6 187 177-423 32-230 (238)
67 PF12768 Rax2: Cortical protei 95.9 0.12 2.5E-06 49.1 11.8 116 246-381 14-130 (281)
68 PF12768 Rax2: Cortical protei 95.8 0.19 4.1E-06 47.7 12.6 78 184-265 1-81 (281)
69 KOG2997 F-box protein FBX9 [Ge 95.8 0.0064 1.4E-07 56.8 2.6 44 43-86 107-155 (366)
70 PF09910 DUF2139: Uncharacteri 95.8 1.8 3.9E-05 40.7 19.1 165 175-374 40-232 (339)
71 PF08450 SGL: SMP-30/Gluconola 95.7 0.84 1.8E-05 42.4 16.9 160 180-380 50-221 (246)
72 PF03178 CPSF_A: CPSF A subuni 95.2 1.3 2.8E-05 43.1 16.8 154 229-422 42-203 (321)
73 PF03089 RAG2: Recombination a 94.9 3.2 7E-05 38.7 17.8 74 168-241 84-177 (337)
74 TIGR03866 PQQ_ABC_repeats PQQ- 94.8 3.7 8.1E-05 38.7 20.0 63 183-262 2-67 (300)
75 PF05096 Glu_cyclase_2: Glutam 94.8 3.1 6.6E-05 38.9 16.7 190 176-409 49-250 (264)
76 KOG0274 Cdc4 and related F-box 93.6 6.5 0.00014 41.1 18.3 45 40-84 105-149 (537)
77 smart00284 OLF Olfactomedin-li 93.5 6.1 0.00013 36.8 16.0 196 181-408 34-242 (255)
78 TIGR03866 PQQ_ABC_repeats PQQ- 93.1 7.8 0.00017 36.4 23.8 62 181-259 42-106 (300)
79 PRK13684 Ycf48-like protein; P 93.1 9.5 0.00021 37.3 20.1 202 152-409 113-321 (334)
80 TIGR02800 propeller_TolB tol-p 92.8 12 0.00025 37.7 24.7 148 197-380 214-362 (417)
81 KOG0310 Conserved WD40 repeat- 92.8 9.8 0.00021 38.1 16.9 148 179-374 77-227 (487)
82 cd00094 HX Hemopexin-like repe 92.6 7.2 0.00016 34.8 16.0 99 295-410 63-167 (194)
83 KOG2055 WD40 repeat protein [G 92.0 6.7 0.00015 39.0 14.6 149 182-374 225-376 (514)
84 PRK04922 tolB translocation pr 91.8 16 0.00035 37.1 21.9 141 197-374 272-413 (433)
85 PF08268 FBA_3: F-box associat 91.8 1.5 3.3E-05 36.2 9.1 83 346-433 2-87 (129)
86 PRK13684 Ycf48-like protein; P 91.7 14 0.00031 36.1 19.9 199 154-409 72-278 (334)
87 PRK00178 tolB translocation pr 91.6 17 0.00037 36.9 22.0 141 197-374 267-408 (430)
88 PF08450 SGL: SMP-30/Gluconola 91.4 7.3 0.00016 36.0 14.3 114 228-380 11-130 (246)
89 PF02191 OLF: Olfactomedin-lik 91.3 6.8 0.00015 36.6 13.7 198 180-409 29-238 (250)
90 PF02191 OLF: Olfactomedin-lik 91.0 12 0.00026 35.0 14.9 161 171-372 68-247 (250)
91 KOG2055 WD40 repeat protein [G 90.9 7.6 0.00016 38.7 13.7 147 181-373 269-418 (514)
92 PF05096 Glu_cyclase_2: Glutam 90.8 4.1 8.9E-05 38.0 11.5 110 224-375 50-160 (264)
93 PRK00178 tolB translocation pr 90.7 21 0.00045 36.3 26.2 180 196-422 222-405 (430)
94 PF08268 FBA_3: F-box associat 90.5 3.2 7E-05 34.2 9.8 88 291-384 2-92 (129)
95 PRK05137 tolB translocation pr 90.2 23 0.0005 36.0 22.7 147 196-379 269-419 (435)
96 PTZ00421 coronin; Provisional 90.0 26 0.00057 36.3 20.5 108 229-374 138-247 (493)
97 smart00284 OLF Olfactomedin-li 89.9 17 0.00036 33.9 17.7 160 172-372 74-252 (255)
98 PRK04792 tolB translocation pr 89.5 27 0.00059 35.7 22.2 139 248-423 242-382 (448)
99 PRK04792 tolB translocation pr 88.6 31 0.00068 35.3 25.6 148 196-380 241-390 (448)
100 TIGR02800 propeller_TolB tol-p 88.2 31 0.00066 34.7 21.8 118 182-329 246-363 (417)
101 PLN02919 haloacid dehalogenase 88.0 56 0.0012 37.5 24.5 171 181-380 635-841 (1057)
102 cd00216 PQQ_DH Dehydrogenases 87.9 36 0.00079 35.3 19.6 71 177-263 57-137 (488)
103 PF14870 PSII_BNR: Photosynthe 87.5 25 0.00054 33.9 14.6 202 155-411 44-253 (302)
104 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.3 15 0.00032 38.5 14.2 118 177-326 65-197 (527)
105 KOG0316 Conserved WD40 repeat- 87.3 15 0.00032 33.6 11.8 85 197-307 81-167 (307)
106 PRK04043 tolB translocation pr 87.3 36 0.00078 34.5 21.6 182 197-423 213-400 (419)
107 PRK11028 6-phosphogluconolacto 87.3 30 0.00064 33.5 19.2 69 183-265 3-75 (330)
108 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.9 15 0.00033 38.4 14.0 127 223-378 64-197 (527)
109 PF03178 CPSF_A: CPSF A subuni 85.9 16 0.00035 35.3 13.0 101 197-329 62-168 (321)
110 PLN02919 haloacid dehalogenase 85.1 65 0.0014 37.0 18.7 168 181-375 694-891 (1057)
111 PRK04922 tolB translocation pr 84.5 50 0.0011 33.6 25.7 182 196-422 227-410 (433)
112 PF10282 Lactonase: Lactonase, 84.4 43 0.00094 32.8 21.6 164 221-421 146-322 (345)
113 PRK04043 tolB translocation pr 82.9 57 0.0012 33.1 21.4 150 196-379 256-407 (419)
114 PF14870 PSII_BNR: Photosynthe 82.7 47 0.001 32.0 17.9 181 175-410 107-295 (302)
115 PF10282 Lactonase: Lactonase, 82.4 52 0.0011 32.3 21.4 68 180-258 47-119 (345)
116 cd00216 PQQ_DH Dehydrogenases 80.6 75 0.0016 32.9 20.2 81 315-408 369-455 (488)
117 PRK11028 6-phosphogluconolacto 80.5 57 0.0012 31.5 24.2 64 181-258 91-158 (330)
118 PF09910 DUF2139: Uncharacteri 79.9 57 0.0012 31.0 15.6 175 210-408 26-220 (339)
119 KOG1332 Vesicle coat complex C 79.7 51 0.0011 30.4 12.7 69 288-380 226-295 (299)
120 PRK05137 tolB translocation pr 79.7 75 0.0016 32.3 26.2 147 197-380 226-374 (435)
121 PF12217 End_beta_propel: Cata 79.5 53 0.0012 30.5 16.2 212 172-410 75-333 (367)
122 PLN00033 photosystem II stabil 79.4 73 0.0016 32.0 20.7 53 347-409 336-389 (398)
123 KOG0649 WD40 repeat protein [G 79.0 53 0.0012 30.2 14.1 156 208-412 100-266 (325)
124 cd00200 WD40 WD40 domain, foun 79.0 49 0.0011 29.9 19.0 63 181-258 20-83 (289)
125 COG4257 Vgb Streptogramin lyas 78.9 59 0.0013 30.6 16.7 155 181-380 158-313 (353)
126 COG4257 Vgb Streptogramin lyas 78.7 52 0.0011 31.0 12.1 117 178-329 196-314 (353)
127 TIGR03074 PQQ_membr_DH membran 78.7 49 0.0011 36.3 14.2 35 222-266 188-224 (764)
128 PLN00181 protein SPA1-RELATED; 77.5 1.2E+02 0.0027 33.6 19.5 62 182-259 545-609 (793)
129 PF06433 Me-amine-dh_H: Methyl 77.5 5.1 0.00011 38.8 5.6 27 180-210 105-131 (342)
130 PRK03629 tolB translocation pr 77.3 87 0.0019 31.8 22.4 143 197-375 267-409 (429)
131 KOG0289 mRNA splicing factor [ 76.3 74 0.0016 31.8 13.0 121 219-380 348-470 (506)
132 KOG0310 Conserved WD40 repeat- 76.3 92 0.002 31.5 15.0 135 179-359 163-300 (487)
133 PF02897 Peptidase_S9_N: Proly 75.5 81 0.0017 31.7 14.3 149 196-380 251-412 (414)
134 PRK03629 tolB translocation pr 75.5 98 0.0021 31.4 26.3 180 197-421 223-404 (429)
135 PRK02889 tolB translocation pr 73.1 1.1E+02 0.0024 31.0 25.5 180 197-422 220-402 (427)
136 KOG3545 Olfactomedin and relat 72.2 82 0.0018 29.1 11.8 193 181-408 30-236 (249)
137 cd00200 WD40 WD40 domain, foun 71.7 77 0.0017 28.6 22.1 63 181-259 62-126 (289)
138 TIGR03074 PQQ_membr_DH membran 69.3 1.9E+02 0.004 32.0 15.8 71 177-260 312-389 (764)
139 COG1520 FOG: WD40-like repeat 59.9 1.8E+02 0.004 28.6 19.9 154 177-378 64-225 (370)
140 PRK02889 tolB translocation pr 59.6 2E+02 0.0044 29.1 19.9 148 196-380 175-324 (427)
141 KOG0296 Angio-associated migra 58.4 1.9E+02 0.0041 28.3 14.5 131 228-409 75-209 (399)
142 TIGR02658 TTQ_MADH_Hv methylam 58.3 2E+02 0.0042 28.5 22.8 29 179-211 114-142 (352)
143 PF02897 Peptidase_S9_N: Proly 56.9 2.2E+02 0.0047 28.5 16.0 72 176-256 282-357 (414)
144 KOG4341 F-box protein containi 56.6 10 0.00022 37.7 3.0 39 42-80 71-109 (483)
145 PLN00181 protein SPA1-RELATED; 55.2 3.3E+02 0.0072 30.2 21.3 60 181-258 587-650 (793)
146 TIGR02658 TTQ_MADH_Hv methylam 52.3 2.4E+02 0.0053 27.8 11.9 77 182-261 13-90 (352)
147 COG2706 3-carboxymuconate cycl 51.6 2.4E+02 0.0052 27.5 25.2 149 247-421 166-321 (346)
148 PLN00033 photosystem II stabil 51.2 2.7E+02 0.0059 28.0 20.9 71 175-263 140-214 (398)
149 PRK01742 tolB translocation pr 51.0 2.8E+02 0.0061 28.1 19.8 61 197-265 228-289 (429)
150 PLN03215 ascorbic acid mannose 50.4 2.7E+02 0.0059 27.7 17.8 88 174-268 202-306 (373)
151 PF13013 F-box-like_2: F-box-l 50.2 19 0.00042 28.7 3.2 29 43-71 22-50 (109)
152 PF07734 FBA_1: F-box associat 49.7 1.7E+02 0.0036 25.1 11.5 84 291-379 2-90 (164)
153 PF13570 PQQ_3: PQQ-like domai 49.4 32 0.0007 21.4 3.6 24 345-373 17-40 (40)
154 KOG0291 WD40-repeat-containing 49.2 3.8E+02 0.0083 29.1 19.1 140 196-379 329-473 (893)
155 KOG1036 Mitotic spindle checkp 45.2 2.8E+02 0.0062 26.5 18.2 130 197-374 35-165 (323)
156 PTZ00420 coronin; Provisional 45.1 4.1E+02 0.0088 28.2 18.9 25 349-373 225-249 (568)
157 KOG2321 WD40 repeat protein [G 42.7 2.2E+02 0.0048 29.8 9.8 73 170-259 132-208 (703)
158 PF14583 Pectate_lyase22: Olig 42.2 3.7E+02 0.0079 26.9 13.5 242 88-410 42-302 (386)
159 COG1520 FOG: WD40-like repeat 41.8 3.5E+02 0.0076 26.6 20.5 109 180-326 110-225 (370)
160 KOG0266 WD40 repeat-containing 40.6 4.2E+02 0.0091 27.1 17.5 66 181-260 257-322 (456)
161 KOG0649 WD40 repeat protein [G 40.2 3.1E+02 0.0067 25.5 12.4 26 92-121 125-150 (325)
162 PRK01742 tolB translocation pr 38.6 4.3E+02 0.0093 26.7 21.6 36 315-358 356-391 (429)
163 COG4880 Secreted protein conta 37.0 3.9E+02 0.0085 27.0 10.3 44 193-236 402-445 (603)
164 PF12217 End_beta_propel: Cata 36.4 3.7E+02 0.008 25.2 15.7 212 178-409 22-257 (367)
165 KOG0316 Conserved WD40 repeat- 35.6 3.6E+02 0.0078 24.9 12.5 146 181-375 28-176 (307)
166 KOG0282 mRNA splicing factor [ 34.0 4E+02 0.0087 27.2 10.0 27 228-263 269-295 (503)
167 PF03088 Str_synth: Strictosid 33.1 1.9E+02 0.0042 22.1 6.2 34 350-383 10-56 (89)
168 KOG2321 WD40 repeat protein [G 32.6 3.7E+02 0.008 28.2 9.6 36 217-262 132-169 (703)
169 TIGR03032 conserved hypothetic 32.5 4.8E+02 0.01 25.4 15.7 99 288-409 155-259 (335)
170 KOG0266 WD40 repeat-containing 32.0 5.7E+02 0.012 26.1 17.3 95 197-324 225-322 (456)
171 COG3823 Glutamine cyclotransfe 30.2 4.3E+02 0.0092 24.1 13.7 190 174-409 48-248 (262)
172 KOG0281 Beta-TrCP (transducin 29.9 1.9E+02 0.0041 28.2 6.7 90 248-373 340-429 (499)
173 KOG0278 Serine/threonine kinas 28.6 4.9E+02 0.011 24.3 12.1 54 294-359 235-288 (334)
174 KOG2445 Nuclear pore complex c 27.7 5.6E+02 0.012 24.7 9.7 111 254-381 96-218 (361)
175 KOG4378 Nuclear protein COP1 [ 26.4 7.4E+02 0.016 25.6 12.1 29 288-323 214-242 (673)
176 PF00780 CNH: CNH domain; Int 25.9 5.3E+02 0.012 23.8 12.8 58 198-266 115-175 (275)
177 KOG0772 Uncharacterized conser 25.9 7.6E+02 0.017 25.6 13.3 124 216-374 314-447 (641)
178 PF08662 eIF2A: Eukaryotic tra 25.4 4.3E+02 0.0094 23.3 8.2 71 181-266 71-141 (194)
179 KOG0289 mRNA splicing factor [ 25.3 7.2E+02 0.016 25.2 17.0 111 181-329 358-471 (506)
180 KOG3669 Uncharacterized conser 24.4 8.6E+02 0.019 25.7 11.0 58 250-329 210-270 (705)
181 COG4946 Uncharacterized protei 24.3 7.9E+02 0.017 25.3 19.5 99 198-329 342-440 (668)
182 KOG0318 WD40 repeat stress pro 23.8 8.4E+02 0.018 25.4 11.5 65 181-259 454-520 (603)
183 KOG3926 F-box proteins [Amino 23.8 1.2E+02 0.0026 28.4 4.1 32 38-69 197-229 (332)
184 PF06433 Me-amine-dh_H: Methyl 23.7 2.5E+02 0.0054 27.5 6.5 76 228-326 249-326 (342)
185 KOG2502 Tub family proteins [G 23.2 53 0.0011 31.8 1.9 39 41-79 43-89 (355)
186 PF02239 Cytochrom_D1: Cytochr 22.8 7.6E+02 0.016 24.5 12.0 139 196-374 15-160 (369)
187 PF07734 FBA_1: F-box associat 22.7 4.8E+02 0.01 22.2 13.5 41 225-269 2-42 (164)
188 KOG0272 U4/U6 small nuclear ri 22.5 8E+02 0.017 24.7 10.6 64 179-258 312-377 (459)
189 PF14781 BBS2_N: Ciliary BBSom 22.5 2.8E+02 0.0061 23.1 5.7 62 182-262 64-133 (136)
190 KOG0286 G-protein beta subunit 22.3 7E+02 0.015 23.9 17.6 89 158-261 83-179 (343)
191 KOG1520 Predicted alkaloid syn 21.8 8E+02 0.017 24.4 10.0 79 292-380 124-215 (376)
192 KOG0308 Conserved WD40 repeat- 21.0 2.9E+02 0.0062 29.4 6.6 67 179-259 127-204 (735)
193 PF15525 DUF4652: Domain of un 20.4 6.1E+02 0.013 22.5 10.5 73 194-271 85-163 (200)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.5e-43 Score=360.86 Aligned_cols=316 Identities=27% Similarity=0.464 Sum_probs=250.5
Q ss_pred CCCCcHHHHHHhhhccCccc-hhhH-HHh--hHHHHHhhcCch-hhhhhhhcC-CCccEEEEEEeecC-C--ceeEEEeC
Q 011957 43 IPSLPDEISLQILARIPRIY-YLNV-KLV--SRAWKAAITSSE-LFSFRKELG-TTEEWLYILTKVED-D--KLSWHALD 113 (474)
Q Consensus 43 ~~~LPddl~~~il~rlp~~~-~~~~-~~V--ck~W~~li~s~~-~~~~r~~~~-~~~~~l~v~gg~~~-~--~~~~~~yd 113 (474)
+|-||...+.++....+... -..+ ..+ .+.|..+-.... ....|.... ...+.||++||..+ . ...+..||
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd 307 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD 307 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence 47888877777777665110 0011 111 123333322111 222333333 45678999999875 2 23788999
Q ss_pred CCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcC-C
Q 011957 114 PLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFS-R 192 (474)
Q Consensus 114 ~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~-~ 192 (474)
|.+++|..+++||.+ |..+++++++|+||++||.+ +
T Consensus 308 ~~~~~w~~~a~m~~~-------------------------------------------r~~~~~~~~~~~lYv~GG~~~~ 344 (571)
T KOG4441|consen 308 PKTNEWSSLAPMPSP-------------------------------------------RCRVGVAVLNGKLYVVGGYDSG 344 (571)
T ss_pred CCcCcEeecCCCCcc-------------------------------------------cccccEEEECCEEEEEccccCC
Confidence 999999999999975 88899999999999999999 6
Q ss_pred CcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 193 ALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 193 ~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
...++++++|||.+++|..+++|+.+|..+++++++|+||++||.+ +...++++|+|||.+++|+.+++|+.+|++
T Consensus 345 ~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d----g~~~l~svE~YDp~~~~W~~va~m~~~r~~ 420 (571)
T KOG4441|consen 345 SDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD----GEKSLNSVECYDPVTNKWTPVAPMLTRRSG 420 (571)
T ss_pred CcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc----cccccccEEEecCCCCcccccCCCCcceee
Confidence 7889999999999999999999999999999999999999999987 667799999999999999999999999998
Q ss_pred cccchhhccccccceeeEEEeCCEEEEeccCCCCc-ceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCE
Q 011957 273 VLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP-FFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGE 351 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~-~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 351 (474)
+++++++|+||++||.++.. .+..+ ++|||.+++|+.+++ |. .+|.+++ +++++++
T Consensus 421 ---------------~gv~~~~g~iYi~GG~~~~~~~l~sv--e~YDP~t~~W~~~~~-M~----~~R~~~g-~a~~~~~ 477 (571)
T KOG4441|consen 421 ---------------HGVAVLGGKLYIIGGGDGSSNCLNSV--ECYDPETNTWTLIAP-MN----TRRSGFG-VAVLNGK 477 (571)
T ss_pred ---------------eEEEEECCEEEEEcCcCCCccccceE--EEEcCCCCceeecCC-cc----cccccce-EEEECCE
Confidence 99999999999999998877 45444 999999999999998 64 3555555 8999999
Q ss_pred EEEEcCCCCC-CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEeecCCCCCCC
Q 011957 352 LYALDPSGAL-DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADVKNHFASMP 430 (474)
Q Consensus 352 lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~~~~~~~~w 430 (474)
||++||.+.. ....+++|||++++|+.+. .+..+|...++++++++||++||..+ ...+..++.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~------~m~~~rs~~g~~~~~~~ly~vGG~~~-~~~l~~ve~-------- 542 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVA------PMTSPRSAVGVVVLGGKLYAVGGFDG-NNNLNTVEC-------- 542 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcc------cCccccccccEEEECCEEEEEecccC-ccccceeEE--------
Confidence 9999998652 2457999999999999985 56677888999999999999999443 333444444
Q ss_pred CCCCCCCccccCCCCCCcccceeeeeec
Q 011957 431 SASSSSFHDCINEPASGSETDTWKMIAI 458 (474)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 458 (474)
||+++++|+.++.
T Consensus 543 ---------------ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 543 ---------------YDPETDTWTEVTE 555 (571)
T ss_pred ---------------cCCCCCceeeCCC
Confidence 4666677777766
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=343.62 Aligned_cols=245 Identities=13% Similarity=0.201 Sum_probs=200.6
Q ss_pred cEEEEEEeecC-CceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCCc
Q 011957 94 EWLYILTKVED-DKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGF 172 (474)
Q Consensus 94 ~~l~v~gg~~~-~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr 172 (474)
..+++.||... ....+++||+.+++|..++++|.+ |
T Consensus 258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~-------------------------------------------r 294 (557)
T PHA02713 258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH-------------------------------------------I 294 (557)
T ss_pred eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc-------------------------------------------c
Confidence 34555444211 112578999999999999999875 7
Q ss_pred cceeEEEeCCEEEEEcCcC-CCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEE
Q 011957 173 CGCSIGAVDGCLYVLGGFS-RALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 173 ~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
..+++++++++||++||.+ .....+++++|||.+++|..+++||.+|..+++++++++||++||.+ +...+++++
T Consensus 295 ~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~----~~~~~~sve 370 (557)
T PHA02713 295 INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQN----GTNVERTIE 370 (557)
T ss_pred cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcC----CCCCCceEE
Confidence 7888999999999999985 34457899999999999999999999999999999999999999975 334578899
Q ss_pred EEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcce----------------eccceE
Q 011957 252 VFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFF----------------VDVGGE 315 (474)
Q Consensus 252 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~----------------~~~gg~ 315 (474)
+|||.+++|+.+++||.+|.. +++++++|+||++||.++.... .....+
T Consensus 371 ~Ydp~~~~W~~~~~mp~~r~~---------------~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIALSS---------------YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred EEECCCCeEEECCCCCccccc---------------ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 999999999999999999998 8889999999999998643210 012348
Q ss_pred EEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCC--CceEEEEECCC-CceEEeccCCCCCCCCCCC
Q 011957 316 VYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALD--SAKIKVYDYHD-DTWKVVVGDVPLPNFTDSE 392 (474)
Q Consensus 316 ~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~--~~~v~~yd~~~-~~W~~v~~~~p~~~~~~~r 392 (474)
+|||++++|+.+++ |. .++..++ +++++|+|||+||.+... ...+++|||++ ++|+.++ .++.+|
T Consensus 436 ~YDP~td~W~~v~~-m~----~~r~~~~-~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~------~m~~~r 503 (557)
T PHA02713 436 RYDTVNNIWETLPN-FW----TGTIRPG-VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT------TTESRL 503 (557)
T ss_pred EECCCCCeEeecCC-CC----cccccCc-EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc------ccCccc
Confidence 99999999999987 53 3444444 899999999999975322 24689999999 8999985 566778
Q ss_pred CCeEEEeeCCEEEEEecCCC
Q 011957 393 SPYLLAGLLGKLHVITNDAN 412 (474)
Q Consensus 393 ~~~~~~~~~~~l~v~GG~~~ 412 (474)
..+++++++|+||++||..+
T Consensus 504 ~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTILHDNTIMMLHCYES 523 (557)
T ss_pred ccceeEEECCEEEEEeeecc
Confidence 88999999999999999644
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.1e-38 Score=324.73 Aligned_cols=240 Identities=27% Similarity=0.498 Sum_probs=205.3
Q ss_pred HHHHHhhcCchhhhhhhhcCCCccEEEEEEeecC-Cc--eeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeee
Q 011957 71 RAWKAAITSSELFSFRKELGTTEEWLYILTKVED-DK--LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVL 147 (474)
Q Consensus 71 k~W~~li~s~~~~~~r~~~~~~~~~l~v~gg~~~-~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~ 147 (474)
+.|..+..-+ ..+.+......++.||++||.+. .. ..+++|||.+++|..+++|+..
T Consensus 311 ~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~------------------- 370 (571)
T KOG4441|consen 311 NEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK------------------- 370 (571)
T ss_pred CcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-------------------
Confidence 5687765443 22233444456899999999984 32 3899999999999999999986
Q ss_pred ccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE
Q 011957 148 GSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL 227 (474)
Q Consensus 148 ~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 227 (474)
|..+++++++|.||++||+++...++++++|||.+++|..+++|+.+|++|+++++
T Consensus 371 ------------------------R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~ 426 (571)
T KOG4441|consen 371 ------------------------RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL 426 (571)
T ss_pred ------------------------cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE
Confidence 99999999999999999999888899999999999999999999999999999999
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP 307 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~ 307 (474)
+++||++||.+.. ...++++++|||.+++|+.+++|+.+|.+ +++++++++||++||.++..
T Consensus 427 ~g~iYi~GG~~~~---~~~l~sve~YDP~t~~W~~~~~M~~~R~~---------------~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 427 GGKLYIIGGGDGS---SNCLNSVECYDPETNTWTLIAPMNTRRSG---------------FGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred CCEEEEEcCcCCC---ccccceEEEEcCCCCceeecCCccccccc---------------ceEEEECCEEEEECCccCCC
Confidence 9999999998622 22789999999999999999999999999 89999999999999999844
Q ss_pred ceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEec
Q 011957 308 FFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 308 ~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~ 380 (474)
.... .++|||++++|+.+++ |.. ++...+ +++.+++||++||.++. ..+.+..|||++++|+.+.
T Consensus 489 ~~~~--VE~ydp~~~~W~~v~~-m~~--~rs~~g---~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 489 ALSS--VERYDPETNQWTMVAP-MTS--PRSAVG---VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred ccce--EEEEcCCCCceeEccc-Ccc--cccccc---EEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 3333 5999999999999976 643 344433 89999999999997543 4789999999999999985
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.3e-37 Score=301.35 Aligned_cols=284 Identities=17% Similarity=0.257 Sum_probs=207.0
Q ss_pred HHHHhhcCc-hhhhhhhhc--CCCccEEEEEEeecCC----ceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeee
Q 011957 72 AWKAAITSS-ELFSFRKEL--GTTEEWLYILTKVEDD----KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMW 144 (474)
Q Consensus 72 ~W~~li~s~-~~~~~r~~~--~~~~~~l~v~gg~~~~----~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~ 144 (474)
+|..+.... ..+..|..+ ...++.||++||.... ..++++||+.+++|..+++++..
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~---------------- 71 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV---------------- 71 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC----------------
Confidence 366654421 233344433 3457899999997431 13799999999999998876532
Q ss_pred eeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC-----CCCc
Q 011957 145 NVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM-----SVGR 219 (474)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r 219 (474)
+...+.+|++++++++||++||.+.....+++++||+.+++|+.+++| |.+|
T Consensus 72 -----------------------p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 72 -----------------------PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred -----------------------CCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 111245788899999999999987766788999999999999999887 8899
Q ss_pred ceeeEEEECCEEEEEeceecCCC--CCccCceEEEEeCCCCceEEccCCC---ccccccccchhhccccccceeeEEEeC
Q 011957 220 AYSKIGILNNKLYAVGGVTRGPG--GLTPLQSAEVFDPRTGLWSEILSMP---FSKAQVLPTAFLADLLKPIATGMSSYR 294 (474)
Q Consensus 220 ~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~~yd~~t~~W~~~~~~p---~~r~~~~~~~~~~~~~~~~~~~~~~~~ 294 (474)
..|++++++++|||+||...... ....++++++||+++++|+.++++. .+|.. +++++++
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~---------------~~~~~~~ 193 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG---------------AGFAVVQ 193 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc---------------ceEEEEC
Confidence 99999999999999999863221 1124578999999999999998764 56776 7888999
Q ss_pred CEEEEeccCCCC------cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC--------
Q 011957 295 GRLFVPQSLYFW------PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA-------- 360 (474)
Q Consensus 295 ~~iyv~gG~~~~------~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~-------- 360 (474)
++||++||.... ........++||+++++|++++. .. ..|.++..++ +++++++|||+||...
T Consensus 194 ~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~-~g-~~P~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~ 270 (341)
T PLN02153 194 GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET-TG-AKPSARSVFA-HAVVGKYIIIFGGEVWPDLKGHLG 270 (341)
T ss_pred CeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc-cC-CCCCCcceee-eEEECCEEEEECcccCCccccccc
Confidence 999999986521 11111235899999999999875 21 1255666666 7899999999999631
Q ss_pred --CCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEE-ee-CCEEEEEecCCCC
Q 011957 361 --LDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLA-GL-LGKLHVITNDANH 413 (474)
Q Consensus 361 --~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~-~~~l~v~GG~~~~ 413 (474)
...+++++||+++++|+.+.. ...+.+|..+..++++ +. +++|||+||..+.
T Consensus 271 ~~~~~n~v~~~d~~~~~W~~~~~-~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 271 PGTLSNEGYALDTETLVWEKLGE-CGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred cccccccEEEEEcCccEEEeccC-CCCCCCCCccccccccccCCcceEEEEcCcCCC
Confidence 124589999999999999852 1122344444433333 33 4589999997654
No 5
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.6e-36 Score=294.84 Aligned_cols=253 Identities=15% Similarity=0.202 Sum_probs=200.0
Q ss_pred CCCccEEEEEEeecCCc------------eeEEEeC-CCCC-ceeeCCCCCCccchhhhhccceeEeeeeeeccceeeee
Q 011957 90 GTTEEWLYILTKVEDDK------------LSWHALD-PLAG-RWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIAD 155 (474)
Q Consensus 90 ~~~~~~l~v~gg~~~~~------------~~~~~yd-~~~~-~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 155 (474)
+..++.||++||.+... .+++.|+ +..+ +|..+++||.+
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~--------------------------- 62 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE--------------------------- 62 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc---------------------------
Confidence 44678999999975321 1566664 4333 79999988865
Q ss_pred eeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCce----eecCCCCCCcceeeEEEECCEE
Q 011957 156 LIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAW----SEVSSMSVGRAYSKIGILNNKL 231 (474)
Q Consensus 156 ~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~l 231 (474)
|..+++++++++||++||.+.....+++++||+.+++| +.+++||.+|..|++++++++|
T Consensus 63 ----------------r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~i 126 (323)
T TIGR03548 63 ----------------AAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTL 126 (323)
T ss_pred ----------------ccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEE
Confidence 77777888999999999998777789999999999998 7889999999999999999999
Q ss_pred EEEeceecCCCCCccCceEEEEeCCCCceEEccCCCc-cccccccchhhccccccceeeEEEeCCEEEEeccCCCCccee
Q 011957 232 YAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPF-SKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFV 310 (474)
Q Consensus 232 yv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~ 310 (474)
||+||.. ....++++++||+.+++|+.+++||. +|.. +++++++++|||+||.++... .
T Consensus 127 Yv~GG~~----~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~---------------~~~~~~~~~iYv~GG~~~~~~-~ 186 (323)
T TIGR03548 127 YVGGGNR----NGKPSNKSYLFNLETQEWFELPDFPGEPRVQ---------------PVCVKLQNELYVFGGGSNIAY-T 186 (323)
T ss_pred EEEeCcC----CCccCceEEEEcCCCCCeeECCCCCCCCCCc---------------ceEEEECCEEEEEcCCCCccc-c
Confidence 9999974 22347899999999999999999884 6766 777899999999999865432 2
Q ss_pred ccceEEEcCCCCceEEcCCCCCC-CCCccccCcceEEEECCEEEEEcCCCCC----------------------------
Q 011957 311 DVGGEVYDPDVNSWVEMPVGMGE-GWPVRQAGTKLSITVEGELYALDPSGAL---------------------------- 361 (474)
Q Consensus 311 ~~gg~~yd~~t~~W~~~~~~~~~-~~p~~~~~~~~~~~~~~~lyv~GG~~~~---------------------------- 361 (474)
..++||+++++|+.+++ +.. ..|..+.++..+++.+++|||+||.+..
T Consensus 187 --~~~~yd~~~~~W~~~~~-~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
T TIGR03548 187 --DGYKYSPKKNQWQKVAD-PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKP 263 (323)
T ss_pred --ceEEEecCCCeeEECCC-CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCC
Confidence 24899999999999986 422 2355555555456668999999997531
Q ss_pred -----CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCC
Q 011957 362 -----DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANH 413 (474)
Q Consensus 362 -----~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 413 (474)
..+++++||+++++|+.+. .+| ..+|..++++.++++||++||....
T Consensus 264 ~~~~~~~~~v~~yd~~~~~W~~~~-~~p----~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 264 PEWYNWNRKILIYNVRTGKWKSIG-NSP----FFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred ccccCcCceEEEEECCCCeeeEcc-ccc----ccccCchheEEECCEEEEEeccccC
Confidence 1257999999999999985 232 1367788899999999999996554
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.2e-36 Score=305.02 Aligned_cols=279 Identities=15% Similarity=0.219 Sum_probs=210.9
Q ss_pred HHHHHhhcCchhhhhhhhcC--CCccEEEEEEeecCC--c--eeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeee
Q 011957 71 RAWKAAITSSELFSFRKELG--TTEEWLYILTKVEDD--K--LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMW 144 (474)
Q Consensus 71 k~W~~li~s~~~~~~r~~~~--~~~~~l~v~gg~~~~--~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~ 144 (474)
.+|..+....+.+..|..++ ..++.||++||.... . .++++||+.+++|..++++...
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~---------------- 214 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV---------------- 214 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC----------------
Confidence 57887655444444555444 357899999997421 1 3699999999999987654322
Q ss_pred eeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC---CCCcce
Q 011957 145 NVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM---SVGRAY 221 (474)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~ 221 (474)
|+.+|..|++++++++|||+||.+....++++++||+.+++|++++++ |.+|+.
T Consensus 215 -----------------------P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 215 -----------------------PHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred -----------------------CCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 112367888999999999999988766789999999999999999888 899999
Q ss_pred eeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccC---CCccccccccchhhccccccceeeEEEeCCEEE
Q 011957 222 SKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILS---MPFSKAQVLPTAFLADLLKPIATGMSSYRGRLF 298 (474)
Q Consensus 222 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iy 298 (474)
|++++++++|||+||.. ....++++++||+.+++|+.+++ +|.+|.. +++++++++||
T Consensus 272 h~~~~~~~~iYv~GG~~----~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~---------------~~~~~~~gkiy 332 (470)
T PLN02193 272 HSMAADEENVYVFGGVS----ATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG---------------AGLEVVQGKVW 332 (470)
T ss_pred eEEEEECCEEEEECCCC----CCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC---------------cEEEEECCcEE
Confidence 99999999999999985 33457899999999999999875 5667777 88889999999
Q ss_pred EeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC----------CCCceEEE
Q 011957 299 VPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA----------LDSAKIKV 368 (474)
Q Consensus 299 v~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~ 368 (474)
++||.++.. +. ..++||+.+++|++++. +.. .|.+|..++ +++++++|||+||... ...+++++
T Consensus 333 viGG~~g~~-~~--dv~~yD~~t~~W~~~~~-~g~-~P~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 333 VVYGFNGCE-VD--DVHYYDPVQDKWTQVET-FGV-RPSERSVFA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred EEECCCCCc-cC--ceEEEECCCCEEEEecc-CCC-CCCCcceeE-EEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 999976543 23 34999999999999976 321 255666666 7899999999999642 12358999
Q ss_pred EECCCCceEEeccCCCCCCCCCCCCCeEE--EeeC--CEEEEEecCCCC
Q 011957 369 YDYHDDTWKVVVGDVPLPNFTDSESPYLL--AGLL--GKLHVITNDANH 413 (474)
Q Consensus 369 yd~~~~~W~~v~~~~p~~~~~~~r~~~~~--~~~~--~~l~v~GG~~~~ 413 (474)
||+.+++|+.+......+..|.+|..+++ +.+. +.|++|||....
T Consensus 407 ~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 407 LDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred EEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 99999999998532112234566654432 2233 459999997544
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.3e-35 Score=300.88 Aligned_cols=253 Identities=15% Similarity=0.214 Sum_probs=199.0
Q ss_pred ccEEEEEEeecCCce---eEEEeCCCC----CceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeecccccccc
Q 011957 93 EEWLYILTKVEDDKL---SWHALDPLA----GRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKD 165 (474)
Q Consensus 93 ~~~l~v~gg~~~~~~---~~~~yd~~~----~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 165 (474)
++.|+.|+|...... ..+.+++.+ ++|.+++++..
T Consensus 120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~-------------------------------------- 161 (470)
T PLN02193 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGE-------------------------------------- 161 (470)
T ss_pred CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCC--------------------------------------
Confidence 456666666543322 345557655 79999876543
Q ss_pred ccCCCCccceeEEEeCCEEEEEcCcCCC--cccceEEEEeCCCCceeecCC---CCC-CcceeeEEEECCEEEEEeceec
Q 011957 166 ALDRMGFCGCSIGAVDGCLYVLGGFSRA--LAMRNVWRYDPVLNAWSEVSS---MSV-GRAYSKIGILNNKLYAVGGVTR 239 (474)
Q Consensus 166 ~~~p~pr~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~---~p~-~r~~~~~~~~~~~lyv~GG~~~ 239 (474)
.|.||..|+++++++.|||+||.... ...+++|+||+.+++|+.+++ +|. .|..|++++++++|||+||..
T Consensus 162 --~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~- 238 (470)
T PLN02193 162 --GPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRD- 238 (470)
T ss_pred --CCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCC-
Confidence 24569999999999999999997532 235789999999999998864 343 356889999999999999975
Q ss_pred CCCCCccCceEEEEeCCCCceEEccCC---CccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEE
Q 011957 240 GPGGLTPLQSAEVFDPRTGLWSEILSM---PFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEV 316 (474)
Q Consensus 240 ~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~ 316 (474)
....++++++||+.+++|+.++++ |.+|.. |++++++++|||+||.+....+.++ ++
T Consensus 239 ---~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~---------------h~~~~~~~~iYv~GG~~~~~~~~~~--~~ 298 (470)
T PLN02193 239 ---ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF---------------HSMAADEENVYVFGGVSATARLKTL--DS 298 (470)
T ss_pred ---CCCCCccEEEEECCCCEEEEcCcCCCCCCCccc---------------eEEEEECCEEEEECCCCCCCCcceE--EE
Confidence 234578999999999999999888 788888 8888999999999998776555444 89
Q ss_pred EcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeE
Q 011957 317 YDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYL 396 (474)
Q Consensus 317 yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~ 396 (474)
||+.+++|++++.+. ..|..+.++. +++++++||++||.+....+++++||+++++|+++.. .+..|.+|..++
T Consensus 299 yd~~t~~W~~~~~~~--~~~~~R~~~~-~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~---~g~~P~~R~~~~ 372 (470)
T PLN02193 299 YNIVDKKWFHCSTPG--DSFSIRGGAG-LEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET---FGVRPSERSVFA 372 (470)
T ss_pred EECCCCEEEeCCCCC--CCCCCCCCcE-EEEECCcEEEEECCCCCccCceEEEECCCCEEEEecc---CCCCCCCcceeE
Confidence 999999999987522 1245666665 7888999999999765556899999999999999852 223467788899
Q ss_pred EEeeCCEEEEEecCCC
Q 011957 397 LAGLLGKLHVITNDAN 412 (474)
Q Consensus 397 ~~~~~~~l~v~GG~~~ 412 (474)
++.++++|||+||...
T Consensus 373 ~~~~~~~iyv~GG~~~ 388 (470)
T PLN02193 373 SAAVGKHIVIFGGEIA 388 (470)
T ss_pred EEEECCEEEEECCccC
Confidence 9999999999999653
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-35 Score=291.90 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=174.0
Q ss_pred CCCCccceeEEEeCCEEEEEcCcCC--CcccceEEEEeCCCCceeecCCCC-CCc---ceeeEEEECCEEEEEeceecCC
Q 011957 168 DRMGFCGCSIGAVDGCLYVLGGFSR--ALAMRNVWRYDPVLNAWSEVSSMS-VGR---AYSKIGILNNKLYAVGGVTRGP 241 (474)
Q Consensus 168 ~p~pr~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~p-~~r---~~~~~~~~~~~lyv~GG~~~~~ 241 (474)
.|.||..|++++++++|||+||... ....+++++||+.+++|+.+++++ .+| .+|++++++++|||+||..
T Consensus 19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~--- 95 (341)
T PLN02153 19 GPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRD--- 95 (341)
T ss_pred CCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCC---
Confidence 4567999999999999999999853 234579999999999999988764 344 3788999999999999975
Q ss_pred CCCccCceEEEEeCCCCceEEccCC-----CccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc------cee
Q 011957 242 GGLTPLQSAEVFDPRTGLWSEILSM-----PFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP------FFV 310 (474)
Q Consensus 242 ~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~------~~~ 310 (474)
....++++++||+++++|+.+++| |.+|.. |++++++++|||+||.+... .+.
T Consensus 96 -~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 159 (341)
T PLN02153 96 -EKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF---------------HSMASDENHVYVFGGVSKGGLMKTPERFR 159 (341)
T ss_pred -CCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee---------------eEEEEECCEEEEECCccCCCccCCCcccc
Confidence 223468999999999999999887 777877 88899999999999986432 122
Q ss_pred ccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC---------CCCceEEEEECCCCceEEecc
Q 011957 311 DVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA---------LDSAKIKVYDYHDDTWKVVVG 381 (474)
Q Consensus 311 ~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~---------~~~~~v~~yd~~~~~W~~v~~ 381 (474)
..++||+++++|+.++. +.. .|.++.+++ +++++++|||+||... ...+++++||+++++|++++.
T Consensus 160 --~v~~yd~~~~~W~~l~~-~~~-~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 160 --TIEAYNIADGKWVQLPD-PGE-NFEKRGGAG-FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred --eEEEEECCCCeEeeCCC-CCC-CCCCCCcce-EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 24899999999999986 332 134566665 7889999999998531 124689999999999999852
Q ss_pred CCCCCCCCCCCCCeEEEeeCCEEEEEecCC
Q 011957 382 DVPLPNFTDSESPYLLAGLLGKLHVITNDA 411 (474)
Q Consensus 382 ~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~ 411 (474)
.+.+|.+|..+++++++++||||||..
T Consensus 235 ---~g~~P~~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 235 ---TGAKPSARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred ---cCCCCCCcceeeeEEECCEEEEECccc
Confidence 234567788899999999999999964
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=313.48 Aligned_cols=226 Identities=14% Similarity=0.218 Sum_probs=189.7
Q ss_pred hcCCCccEEEEEEeecC-C--ceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccc
Q 011957 88 ELGTTEEWLYILTKVED-D--KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKK 164 (474)
Q Consensus 88 ~~~~~~~~l~v~gg~~~-~--~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 164 (474)
.....++.||++||... . ...+++|||.+++|..+++|+.+
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~------------------------------------ 341 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN------------------------------------ 341 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch------------------------------------
Confidence 34456889999999742 2 24789999999999999999875
Q ss_pred cccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCC--
Q 011957 165 DALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPG-- 242 (474)
Q Consensus 165 ~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-- 242 (474)
|..+++++++|+||++||.++....+++++|||.+++|+.+++||.+|..+++++++++|||+||......
T Consensus 342 -------R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 342 -------RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred -------hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccc
Confidence 88999999999999999997766688999999999999999999999999999999999999999752210
Q ss_pred ------------CCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCccee
Q 011957 243 ------------GLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFV 310 (474)
Q Consensus 243 ------------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~ 310 (474)
....++++++|||++++|+.+++|+.+|.. +++++++|+||++||.++.....
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~---------------~~~~~~~~~IYv~GG~~~~~~~~ 479 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR---------------PGVVSHKDDIYVVCDIKDEKNVK 479 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCccccc---------------CcEEEECCEEEEEeCCCCCCccc
Confidence 011367899999999999999999999988 88999999999999987543221
Q ss_pred ccceEEEcCCC-CceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 311 DVGGEVYDPDV-NSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 311 ~~gg~~yd~~t-~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
...++|||++ ++|+.+++ |+ .++..++ +++++|+||++||.+.. ..+++||+.+++|+.+.
T Consensus 480 -~~ve~Ydp~~~~~W~~~~~-m~----~~r~~~~-~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 480 -TCIFRYNTNTYNGWELITT-TE----SRLSALH-TILHDNTIMMLHCYESY--MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred -eeEEEecCCCCCCeeEccc-cC----cccccce-eEEECCEEEEEeeecce--eehhhcCcccccccchh
Confidence 2348999999 89999987 53 4555555 89999999999997653 47999999999999985
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.6e-35 Score=288.46 Aligned_cols=253 Identities=21% Similarity=0.315 Sum_probs=192.1
Q ss_pred CCccEEEEEEeecCCceeEEEeCC--CCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccC
Q 011957 91 TTEEWLYILTKVEDDKLSWHALDP--LAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALD 168 (474)
Q Consensus 91 ~~~~~l~v~gg~~~~~~~~~~yd~--~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (474)
..++.||++||... ..+++||+ .+++|..+++||..
T Consensus 15 ~~~~~vyv~GG~~~--~~~~~~d~~~~~~~W~~l~~~p~~---------------------------------------- 52 (346)
T TIGR03547 15 IIGDKVYVGLGSAG--TSWYKLDLKKPSKGWQKIADFPGG---------------------------------------- 52 (346)
T ss_pred EECCEEEEEccccC--CeeEEEECCCCCCCceECCCCCCC----------------------------------------
Confidence 45789999999743 36788885 67899999998842
Q ss_pred CCCccceeEEEeCCEEEEEcCcCCC------cccceEEEEeCCCCceeecC-CCCCCcceeeEE-EECCEEEEEeceecC
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGFSRA------LAMRNVWRYDPVLNAWSEVS-SMSVGRAYSKIG-ILNNKLYAVGGVTRG 240 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~ 240 (474)
+|..+++++++++|||+||.... ..++++++|||.+++|+.++ ++|.+|.+++++ +++++|||+||....
T Consensus 53 --~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~ 130 (346)
T TIGR03547 53 --PRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKN 130 (346)
T ss_pred --CcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChH
Confidence 38888999999999999998532 14689999999999999997 567777777776 789999999997521
Q ss_pred CC------------------------------CCccCceEEEEeCCCCceEEccCCCc-cccccccchhhccccccceee
Q 011957 241 PG------------------------------GLTPLQSAEVFDPRTGLWSEILSMPF-SKAQVLPTAFLADLLKPIATG 289 (474)
Q Consensus 241 ~~------------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~ 289 (474)
.. ....++++++||+.+++|+.+++||. ++.. ++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~---------------~~ 195 (346)
T TIGR03547 131 IFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG---------------SA 195 (346)
T ss_pred HHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC---------------ce
Confidence 00 00124789999999999999999986 5776 88
Q ss_pred EEEeCCEEEEeccCCCCcceeccceEEE--cCCCCceEEcCCCCCCCCCc-----cccCcceEEEECCEEEEEcCCCCCC
Q 011957 290 MSSYRGRLFVPQSLYFWPFFVDVGGEVY--DPDVNSWVEMPVGMGEGWPV-----RQAGTKLSITVEGELYALDPSGALD 362 (474)
Q Consensus 290 ~~~~~~~iyv~gG~~~~~~~~~~gg~~y--d~~t~~W~~~~~~~~~~~p~-----~~~~~~~~~~~~~~lyv~GG~~~~~ 362 (474)
+++++++|||+||...... .....+.| |+++++|+++++ |+. |+ .+.++. +++++++|||+||.....
T Consensus 196 ~~~~~~~iyv~GG~~~~~~-~~~~~~~y~~~~~~~~W~~~~~-m~~--~r~~~~~~~~~~~-a~~~~~~Iyv~GG~~~~~ 270 (346)
T TIGR03547 196 IVHKGNKLLLINGEIKPGL-RTAEVKQYLFTGGKLEWNKLPP-LPP--PKSSSQEGLAGAF-AGISNGVLLVAGGANFPG 270 (346)
T ss_pred EEEECCEEEEEeeeeCCCc-cchheEEEEecCCCceeeecCC-CCC--CCCCccccccEEe-eeEECCEEEEeecCCCCC
Confidence 8899999999999754321 11222444 567889999987 543 22 122333 678999999999964211
Q ss_pred ------------------CceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCC
Q 011957 363 ------------------SAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANH 413 (474)
Q Consensus 363 ------------------~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 413 (474)
...+++||+++++|+.+. .++.+|..+++++++|+|||+||....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~------~lp~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 271 AQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG------KLPQGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred chhhhhcCCccccCCCCceeEeeEEEecCCcccccC------CCCCCceeeEEEEcCCEEEEEeccCCC
Confidence 136899999999999985 345567777888899999999997654
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=301.02 Aligned_cols=209 Identities=18% Similarity=0.374 Sum_probs=173.7
Q ss_pred cceeEEEeCCEEEEEcCcCCC-cccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEE
Q 011957 173 CGCSIGAVDGCLYVLGGFSRA-LAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 173 ~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
..++++++++.||++||.+.. ...+++++||+.+++|..+++||.+|..|++++++++||++||.. +....++++
T Consensus 286 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~----~~~~~~~v~ 361 (534)
T PHA03098 286 YCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY----NSISLNTVE 361 (534)
T ss_pred ccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCC----CCEecceEE
Confidence 346788899999999998753 346799999999999999999999999999999999999999975 334578999
Q ss_pred EEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCC
Q 011957 252 VFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGM 331 (474)
Q Consensus 252 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~ 331 (474)
+||+.+++|+.+++||.||.. +++++++++||++||........ ...++||+.+++|+.+++ +
T Consensus 362 ~yd~~~~~W~~~~~lp~~r~~---------------~~~~~~~~~iYv~GG~~~~~~~~-~~v~~yd~~t~~W~~~~~-~ 424 (534)
T PHA03098 362 SWKPGESKWREEPPLIFPRYN---------------PCVVNVNNLIYVIGGISKNDELL-KTVECFSLNTNKWSKGSP-L 424 (534)
T ss_pred EEcCCCCceeeCCCcCcCCcc---------------ceEEEECCEEEEECCcCCCCccc-ceEEEEeCCCCeeeecCC-C
Confidence 999999999999999999988 88899999999999965432211 234999999999999876 4
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCC----CceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEE
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALD----SAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVI 407 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~----~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 407 (474)
|.++.+++ +++.+++||++||.+... .+.+++||+++++|+.++ .++.+|..++++.++++|||+
T Consensus 425 ----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~iyv~ 493 (534)
T PHA03098 425 ----PISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS------SLNFPRINASLCIFNNKIYVV 493 (534)
T ss_pred ----CccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC------CCCcccccceEEEECCEEEEE
Confidence 44566665 788999999999964322 356999999999999985 334567778888999999999
Q ss_pred ecCCCC
Q 011957 408 TNDANH 413 (474)
Q Consensus 408 GG~~~~ 413 (474)
||..+.
T Consensus 494 GG~~~~ 499 (534)
T PHA03098 494 GGDKYE 499 (534)
T ss_pred cCCcCC
Confidence 996543
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.3e-34 Score=285.19 Aligned_cols=264 Identities=19% Similarity=0.276 Sum_probs=193.8
Q ss_pred CCCccEEEEEEeecCCceeEEEeCCC--CCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeecccccccccc
Q 011957 90 GTTEEWLYILTKVEDDKLSWHALDPL--AGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDAL 167 (474)
Q Consensus 90 ~~~~~~l~v~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (474)
...++.||++||.... .+++||+. +++|..++++|..
T Consensus 35 ~~~~~~iyv~gG~~~~--~~~~~d~~~~~~~W~~l~~~p~~--------------------------------------- 73 (376)
T PRK14131 35 AIDNNTVYVGLGSAGT--SWYKLDLNAPSKGWTKIAAFPGG--------------------------------------- 73 (376)
T ss_pred EEECCEEEEEeCCCCC--eEEEEECCCCCCCeEECCcCCCC---------------------------------------
Confidence 3457899999986443 57788875 5789999988743
Q ss_pred CCCCccceeEEEeCCEEEEEcCcCC------CcccceEEEEeCCCCceeecCC-CCCCcceeeEEE-ECCEEEEEeceec
Q 011957 168 DRMGFCGCSIGAVDGCLYVLGGFSR------ALAMRNVWRYDPVLNAWSEVSS-MSVGRAYSKIGI-LNNKLYAVGGVTR 239 (474)
Q Consensus 168 ~p~pr~~~~~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~ 239 (474)
+|..+++++++++|||+||... ...++++++||+.+++|+.+++ +|.++.+|++++ .+++|||+||...
T Consensus 74 ---~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~ 150 (376)
T PRK14131 74 ---PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNK 150 (376)
T ss_pred ---CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCH
Confidence 4888899999999999999864 1236899999999999999985 477777888777 8999999999752
Q ss_pred CCC------------------------------CCccCceEEEEeCCCCceEEccCCCc-cccccccchhhcccccccee
Q 011957 240 GPG------------------------------GLTPLQSAEVFDPRTGLWSEILSMPF-SKAQVLPTAFLADLLKPIAT 288 (474)
Q Consensus 240 ~~~------------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~ 288 (474)
... .....+++++||+.+++|+.++++|. ++.. +
T Consensus 151 ~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~---------------~ 215 (376)
T PRK14131 151 NIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG---------------S 215 (376)
T ss_pred HHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc---------------c
Confidence 100 00124789999999999999999996 5666 7
Q ss_pred eEEEeCCEEEEeccCCCCc-ceeccceEEEcCCCCceEEcCCCCCCCC----CccccCcceEEEECCEEEEEcCCCCCC-
Q 011957 289 GMSSYRGRLFVPQSLYFWP-FFVDVGGEVYDPDVNSWVEMPVGMGEGW----PVRQAGTKLSITVEGELYALDPSGALD- 362 (474)
Q Consensus 289 ~~~~~~~~iyv~gG~~~~~-~~~~~gg~~yd~~t~~W~~~~~~~~~~~----p~~~~~~~~~~~~~~~lyv~GG~~~~~- 362 (474)
+++.++++|||+||..... ....+-...||+++++|+++++ |+... +....++ .+++++++|||+||.+...
T Consensus 216 a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~-~a~~~~~~iyv~GG~~~~~~ 293 (376)
T PRK14131 216 AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD-LPPAPGGSSQEGVAGA-FAGYSNGVLLVAGGANFPGA 293 (376)
T ss_pred eEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-CCCCCcCCcCCccceE-eceeECCEEEEeeccCCCCC
Confidence 8888999999999964321 1111212467889999999986 53310 0111121 1578899999999964211
Q ss_pred -----------------CceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEE
Q 011957 363 -----------------SAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQA 420 (474)
Q Consensus 363 -----------------~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 420 (474)
...+++||+++++|+.+. .++.+|..++++.++++|||+||..+....+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~------~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v 362 (376)
T PRK14131 294 RENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG------ELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDV 362 (376)
T ss_pred hhhhhcCCcccccCCcceeehheEEecCCcccccC------cCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeE
Confidence 124678999999999874 4456677788899999999999976543333333
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.8e-34 Score=290.75 Aligned_cols=208 Identities=18% Similarity=0.215 Sum_probs=172.5
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++..++.||++||.++....+.++.|||.+++|..+++|+.+|..+++++++++||++||.. + .+++++||+.
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~----~---~~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP----N---PTSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC----C---CCceEEEECC
Confidence 44589999999998766677899999999999999999999999999999999999999974 1 2579999999
Q ss_pred CCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 257 TGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 257 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
+++|+.+++||.+|.. +++++++|+||++||.++.. ...++|||.+++|+.+++ |.
T Consensus 340 ~n~W~~~~~l~~~r~~---------------~~~~~~~g~IYviGG~~~~~----~~ve~ydp~~~~W~~~~~-m~---- 395 (480)
T PHA02790 340 DAAWVNMPSLLKPRCN---------------PAVASINNVIYVIGGHSETD----TTTEYLLPNHDQWQFGPS-TY---- 395 (480)
T ss_pred CCeEEECCCCCCCCcc---------------cEEEEECCEEEEecCcCCCC----ccEEEEeCCCCEEEeCCC-CC----
Confidence 9999999999999998 89999999999999976532 235899999999999887 53
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCcee
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIA 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~ 416 (474)
.++.+++ +++++|+||++|| .+++||+++++|+.++ .++.+|..+++++++|+|||+||..+.. .
T Consensus 396 ~~r~~~~-~~~~~~~IYv~GG-------~~e~ydp~~~~W~~~~------~m~~~r~~~~~~v~~~~IYviGG~~~~~-~ 460 (480)
T PHA02790 396 YPHYKSC-ALVFGRRLFLVGR-------NAEFYCESSNTWTLID------DPIYPRDNPELIIVDNKLLLIGGFYRGS-Y 460 (480)
T ss_pred Cccccce-EEEECCEEEEECC-------ceEEecCCCCcEeEcC------CCCCCccccEEEEECCEEEEECCcCCCc-c
Confidence 3444554 7899999999998 3678999999999985 4556788899999999999999965432 2
Q ss_pred EEEEeecCCCCCCC
Q 011957 417 VLQADVKNHFASMP 430 (474)
Q Consensus 417 ~~~~d~~~~~~~~w 430 (474)
+..+++|||.++.|
T Consensus 461 ~~~ve~Yd~~~~~W 474 (480)
T PHA02790 461 IDTIEVYNNRTYSW 474 (480)
T ss_pred cceEEEEECCCCeE
Confidence 33445555444444
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=287.53 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=176.7
Q ss_pred CccEEEEEEeecCCc--eeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCC
Q 011957 92 TEEWLYILTKVEDDK--LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDR 169 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 169 (474)
.++.||++||.+... ..+++|||.+++|..+++|+.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~----------------------------------------- 308 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP----------------------------------------- 308 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----------------------------------------
Confidence 578899999975432 3688999999999999999875
Q ss_pred CCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCce
Q 011957 170 MGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQS 249 (474)
Q Consensus 170 ~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 249 (474)
|..+++++++|+||++||.+. .+++++|||.+++|..+++||.+|..|++++++++|||+||... ..++
T Consensus 309 --r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~------~~~~ 377 (480)
T PHA02790 309 --RLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE------TDTT 377 (480)
T ss_pred --hhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC------CCcc
Confidence 778888999999999999753 26799999999999999999999999999999999999999741 1367
Q ss_pred EEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCC
Q 011957 250 AEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV 329 (474)
Q Consensus 250 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~ 329 (474)
+++|||.+++|+.+++|+.||.. +++++++|+||++||. .++||+++++|+.+++
T Consensus 378 ve~ydp~~~~W~~~~~m~~~r~~---------------~~~~~~~~~IYv~GG~----------~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 378 TEYLLPNHDQWQFGPSTYYPHYK---------------SCALVFGRRLFLVGRN----------AEFYCESSNTWTLIDD 432 (480)
T ss_pred EEEEeCCCCEEEeCCCCCCcccc---------------ceEEEECCEEEEECCc----------eEEecCCCCcEeEcCC
Confidence 99999999999999999999998 8888999999999873 2899999999999986
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEec
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~ 380 (474)
|+ .++.+++ +++++|+||++||.+.. ....+++||+++++|+...
T Consensus 433 -m~----~~r~~~~-~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 433 -PI----YPRDNPE-LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred -CC----CCccccE-EEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 53 3444444 89999999999997532 2468999999999998763
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=290.03 Aligned_cols=223 Identities=19% Similarity=0.366 Sum_probs=188.5
Q ss_pred cCCCccEEEEEEeecCCc---eeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeecccccccc
Q 011957 89 LGTTEEWLYILTKVEDDK---LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKD 165 (474)
Q Consensus 89 ~~~~~~~l~v~gg~~~~~---~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 165 (474)
....++.||++||..... ..+++||+.+++|..+++++.+
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------------------------------------- 332 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP------------------------------------- 332 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-------------------------------------
Confidence 334578999999976432 2789999999999999988865
Q ss_pred ccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCc
Q 011957 166 ALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 166 ~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
|..|++++++++||++||.+.....+++++||+.+++|+.+++||.+|..|++++++++|||+||.... ..
T Consensus 333 ------R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~---~~ 403 (534)
T PHA03098 333 ------RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKN---DE 403 (534)
T ss_pred ------cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCC---Cc
Confidence 888999999999999999986667889999999999999999999999999999999999999997522 22
Q ss_pred cCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcc---eeccceEEEcCCCC
Q 011957 246 PLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPF---FVDVGGEVYDPDVN 322 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~---~~~~gg~~yd~~t~ 322 (474)
.++++++||+.+++|+.++++|.+|.+ ++++.++++||++||...... +. ..++||++++
T Consensus 404 ~~~~v~~yd~~t~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~--~v~~yd~~~~ 466 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGSPLPISHYG---------------GCAIYHDGKIYVIGGISYIDNIKVYN--IVESYNPVTN 466 (534)
T ss_pred ccceEEEEeCCCCeeeecCCCCccccC---------------ceEEEECCEEEEECCccCCCCCcccc--eEEEecCCCC
Confidence 478999999999999999999999988 888999999999999765432 22 2589999999
Q ss_pred ceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCC-CceEEEEECCCCceEEec
Q 011957 323 SWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALD-SAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 323 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~v~~yd~~~~~W~~v~ 380 (474)
+|+.++. ++ .++..++ +++++++|||+||..... .+.+++||+++++|+.++
T Consensus 467 ~W~~~~~-~~----~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 467 KWTELSS-LN----FPRINAS-LCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred ceeeCCC-CC----cccccce-EEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 9999986 43 3444444 778899999999975433 578999999999999985
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=247.28 Aligned_cols=255 Identities=16% Similarity=0.216 Sum_probs=208.5
Q ss_pred ccceeEEEeCCEEEEEcCcCCCc-----ccceEEEEeCCCCceeecCC-------------CCCCcceeeEEEECCEEEE
Q 011957 172 FCGCSIGAVDGCLYVLGGFSRAL-----AMRNVWRYDPVLNAWSEVSS-------------MSVGRAYSKIGILNNKLYA 233 (474)
Q Consensus 172 r~~~~~~~~~~~lyv~GG~~~~~-----~~~~v~~yd~~t~~W~~~~~-------------~p~~r~~~~~~~~~~~lyv 233 (474)
|..|++++++.+||-|||+...+ .--+|.++|..+-+|.++|+ .|..|++|+++.+++++||
T Consensus 14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv 93 (392)
T KOG4693|consen 14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV 93 (392)
T ss_pred cccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence 78999999999999999985432 23589999999999999875 3678999999999999999
Q ss_pred EeceecCCCCCccCceEEEEeCCCCceEEc---cCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCccee
Q 011957 234 VGGVTRGPGGLTPLQSAEVFDPRTGLWSEI---LSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFV 310 (474)
Q Consensus 234 ~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~ 310 (474)
.||.++. ....+.+++|||++++|++. .-+|..|.+ |++++.++.+|||||+.....-+
T Consensus 94 WGGRND~---egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDG---------------HsAcV~gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 94 WGGRNDD---EGACNLLYEFDPETNVWKKPEVEGFVPGARDG---------------HSACVWGNQMYIFGGYEEDAQRF 155 (392)
T ss_pred EcCccCc---ccccceeeeeccccccccccceeeecCCccCC---------------ceeeEECcEEEEecChHHHHHhh
Confidence 9998743 34678899999999999965 357888888 99999999999999977654333
Q ss_pred ccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC----------CCceEEEEECCCCceEEec
Q 011957 311 DVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL----------DSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 311 ~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~----------~~~~v~~yd~~~~~W~~v~ 380 (474)
....+++|..|.+|+.+.. .. ..|+-|-.|+ ++++++.||||||+... ..+.|..+|..|+.|..-.
T Consensus 156 S~d~h~ld~~TmtWr~~~T-kg-~PprwRDFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p 232 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHT-KG-DPPRWRDFHT-ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP 232 (392)
T ss_pred hccceeEeccceeeeehhc-cC-CCchhhhhhh-hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC
Confidence 3455899999999999976 22 2366677776 78999999999996422 2458999999999999853
Q ss_pred cCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEeecCCCCCCCCCCCCCCccccCCCCCCcccceeeeeecc-
Q 011957 381 GDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADVKNHFASMPSASSSSFHDCINEPASGSETDTWKMIAIR- 459 (474)
Q Consensus 381 ~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 459 (474)
+.+..|..|+.|++.+++++||+||| .+..+.+.-.|+| .|||.+..|+.|.++
T Consensus 233 ---~~~~~P~GRRSHS~fvYng~~Y~FGG-Yng~ln~HfndLy---------------------~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 233 ---ENTMKPGGRRSHSTFVYNGKMYMFGG-YNGTLNVHFNDLY---------------------CFDPKTSMWSVISVRG 287 (392)
T ss_pred ---CCCcCCCcccccceEEEcceEEEecc-cchhhhhhhccee---------------------ecccccchheeeeccC
Confidence 23456788999999999999999999 5666777777776 689999999999985
Q ss_pred ccCCcceeeeeEe
Q 011957 460 NAGSAELVSCQTI 472 (474)
Q Consensus 460 ~~~~~~~~~c~v~ 472 (474)
...+++..+|+|+
T Consensus 288 k~P~aRRRqC~~v 300 (392)
T KOG4693|consen 288 KYPSARRRQCSVV 300 (392)
T ss_pred CCCCcccceeEEE
Confidence 6777777788775
No 17
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=242.20 Aligned_cols=268 Identities=15% Similarity=0.196 Sum_probs=208.0
Q ss_pred CccEEEEEEeecCC-------ceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccc
Q 011957 92 TEEWLYILTKVEDD-------KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKK 164 (474)
Q Consensus 92 ~~~~l~v~gg~~~~-------~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 164 (474)
.+..||.|||...+ ..++.++|..+-+|.++|+--.... .+..
T Consensus 22 VG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~------------------------------i~~~ 71 (392)
T KOG4693|consen 22 VGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKAT------------------------------IESP 71 (392)
T ss_pred ecceEEecCCcccccccccCCcceeEEeeccceeEEecCccccccc------------------------------ccCC
Confidence 47799999987432 3589999999999999987322100 0011
Q ss_pred cccCCCCccceeEEEeCCEEEEEcCcCC-CcccceEEEEeCCCCceeec---CCCCCCcceeeEEEECCEEEEEeceecC
Q 011957 165 DALDRMGFCGCSIGAVDGCLYVLGGFSR-ALAMRNVWRYDPVLNAWSEV---SSMSVGRAYSKIGILNNKLYAVGGVTRG 240 (474)
Q Consensus 165 ~~~~p~pr~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 240 (474)
.++-|-.|++|+++.+++++||.||.+. ....|-++.|||++++|.+. .-+|.+|-+|+++++++.+|||||+...
T Consensus 72 yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~ 151 (392)
T KOG4693|consen 72 YPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED 151 (392)
T ss_pred CCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH
Confidence 1233445999999999999999999976 56688999999999999875 4678999999999999999999998744
Q ss_pred CCCCccCceEEEEeCCCCceEEccCCCcc-ccccccchhhccccccceeeEEEeCCEEEEeccCCCCccee-------cc
Q 011957 241 PGGLTPLQSAEVFDPRTGLWSEILSMPFS-KAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFV-------DV 312 (474)
Q Consensus 241 ~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~-------~~ 312 (474)
. ....++++++|..|.+|+.+.....| |..-+ |+++++++.+|||||.......+ ..
T Consensus 152 a--~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDF-------------H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~ 216 (392)
T KOG4693|consen 152 A--QRFSQDTHVLDFATMTWREMHTKGDPPRWRDF-------------HTASVIDGMMYIFGGRSDESGPFHSIHEQYCD 216 (392)
T ss_pred H--HhhhccceeEeccceeeeehhccCCCchhhhh-------------hhhhhccceEEEeccccccCCCccchhhhhcc
Confidence 3 24678999999999999998654332 22211 78889999999999976542111 11
Q ss_pred ceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC---CCceEEEEECCCCceEEeccCCCCCCCC
Q 011957 313 GGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL---DSAKIKVYDYHDDTWKVVVGDVPLPNFT 389 (474)
Q Consensus 313 gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~v~~yd~~~~~W~~v~~~~p~~~~~ 389 (474)
...++|..|+.|...++.. -.|..|..|+ +.+++++||+|||+++. ..++++.|||++..|..|.. .+..|
T Consensus 217 ~i~~ld~~T~aW~r~p~~~--~~P~GRRSHS-~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~---~Gk~P 290 (392)
T KOG4693|consen 217 TIMALDLATGAWTRTPENT--MKPGGRRSHS-TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV---RGKYP 290 (392)
T ss_pred eeEEEeccccccccCCCCC--cCCCcccccc-eEEEcceEEEecccchhhhhhhcceeecccccchheeeec---cCCCC
Confidence 1258999999999976522 2377777777 89999999999998643 35799999999999999863 45667
Q ss_pred CCCCCeEEEeeCCEEEEEecC
Q 011957 390 DSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 390 ~~r~~~~~~~~~~~l~v~GG~ 410 (474)
.+|+.+.+++.++|+|+|||.
T Consensus 291 ~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 291 SARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred CcccceeEEEECCEEEEecCC
Confidence 788888899999999999994
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1e-31 Score=262.49 Aligned_cols=215 Identities=16% Similarity=0.208 Sum_probs=166.4
Q ss_pred CccceeEEEeCCEEEEEcCcCCCc----------ccceEEEEe-CCC-CceeecCCCCCCcceeeEEEECCEEEEEecee
Q 011957 171 GFCGCSIGAVDGCLYVLGGFSRAL----------AMRNVWRYD-PVL-NAWSEVSSMSVGRAYSKIGILNNKLYAVGGVT 238 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~~~~~----------~~~~v~~yd-~~t-~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 238 (474)
.+.++.++++++.|||+||.+..+ ..+++++|+ +.. .+|..+++||.+|..+++++++++||++||..
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 367788889999999999986431 346888885 332 37999999999999889999999999999975
Q ss_pred cCCCCCccCceEEEEeCCCCce----EEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccce
Q 011957 239 RGPGGLTPLQSAEVFDPRTGLW----SEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGG 314 (474)
Q Consensus 239 ~~~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg 314 (474)
+...++++++||+.+++| +.+++||.++.. +++++++++||++||........+ .
T Consensus 83 ----~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~---------------~~~~~~~~~iYv~GG~~~~~~~~~--v 141 (323)
T TIGR03548 83 ----SSERFSSVYRITLDESKEELICETIGNLPFTFEN---------------GSACYKDGTLYVGGGNRNGKPSNK--S 141 (323)
T ss_pred ----CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC---------------ceEEEECCEEEEEeCcCCCccCce--E
Confidence 333578999999999998 788999999987 888999999999999754433333 4
Q ss_pred EEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCC
Q 011957 315 EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESP 394 (474)
Q Consensus 315 ~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~ 394 (474)
++||+.+++|+++++ ++. ..+..+. +++++++|||+||.+.....++++||+++++|+.++ .++.+..+..+..
T Consensus 142 ~~yd~~~~~W~~~~~-~p~---~~r~~~~-~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~p~~~~~ 215 (323)
T TIGR03548 142 YLFNLETQEWFELPD-FPG---EPRVQPV-CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA-DPTTDSEPISLLG 215 (323)
T ss_pred EEEcCCCCCeeECCC-CCC---CCCCcce-EEEECCEEEEEcCCCCccccceEEEecCCCeeEECC-CCCCCCCceeccc
Confidence 999999999999986 421 1344443 788999999999976544567899999999999985 3333333444433
Q ss_pred e-EEEeeCCEEEEEecCCC
Q 011957 395 Y-LLAGLLGKLHVITNDAN 412 (474)
Q Consensus 395 ~-~~~~~~~~l~v~GG~~~ 412 (474)
+ +++..+++|||+||...
T Consensus 216 ~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 216 AASIKINESLLLCIGGFNK 234 (323)
T ss_pred eeEEEECCCEEEEECCcCH
Confidence 3 34456799999999654
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.4e-31 Score=261.55 Aligned_cols=216 Identities=18% Similarity=0.276 Sum_probs=159.3
Q ss_pred CccceeEEEeCCEEEEEcCcCCCcccceEEEEeC--CCCceeecCCCC-CCcceeeEEEECCEEEEEeceecCC--CCCc
Q 011957 171 GFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDP--VLNAWSEVSSMS-VGRAYSKIGILNNKLYAVGGVTRGP--GGLT 245 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~--~~~~ 245 (474)
||..+++++++++|||+||... +++++||+ .+++|+.+++|| .+|..+++++++++|||+||..... ....
T Consensus 7 ~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~ 82 (346)
T TIGR03547 7 GFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQ 82 (346)
T ss_pred cccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcce
Confidence 4777778889999999999743 67899996 678999999999 5899999999999999999975321 1112
Q ss_pred cCceEEEEeCCCCceEEcc-CCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcc---e-----------
Q 011957 246 PLQSAEVFDPRTGLWSEIL-SMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPF---F----------- 309 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~---~----------- 309 (474)
.++++|+||+.+++|+.++ ++|.++.+ ++++ +++++||++||.+.... +
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~~p~~~~~---------------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTRSPVGLLG---------------ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred ecccEEEEECCCCEEecCCCCCCCcccc---------------eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 5789999999999999997 45555554 5555 78999999999764210 0
Q ss_pred ------------------eccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCC--CceEEEE
Q 011957 310 ------------------VDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALD--SAKIKVY 369 (474)
Q Consensus 310 ------------------~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~--~~~v~~y 369 (474)
.....++||+.+++|+.+++ |+. .++.+++ +++++++|||+||..... ...++.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~---~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE-NPF---LGTAGSA-IVHKGNKLLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc-CCC---CcCCCce-EEEECCEEEEEeeeeCCCccchheEEE
Confidence 01235899999999999986 421 2344444 788999999999964322 2355556
Q ss_pred E--CCCCceEEeccCCCCCCC--CCCCCCeEEEeeCCEEEEEecCC
Q 011957 370 D--YHDDTWKVVVGDVPLPNF--TDSESPYLLAGLLGKLHVITNDA 411 (474)
Q Consensus 370 d--~~~~~W~~v~~~~p~~~~--~~~r~~~~~~~~~~~l~v~GG~~ 411 (474)
| +++++|++++ .+|.+.. +..+..+.+++++++|||+||..
T Consensus 223 ~~~~~~~~W~~~~-~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 223 LFTGGKLEWNKLP-PLPPPKSSSQEGLAGAFAGISNGVLLVAGGAN 267 (346)
T ss_pred EecCCCceeeecC-CCCCCCCCccccccEEeeeEECCEEEEeecCC
Confidence 5 5778999985 4554321 22334556788999999999964
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=3e-29 Score=249.58 Aligned_cols=216 Identities=17% Similarity=0.283 Sum_probs=155.3
Q ss_pred ccceeEEEeCCEEEEEcCcCCCcccceEEEEeCC--CCceeecCCCC-CCcceeeEEEECCEEEEEeceecC-CCC-Ccc
Q 011957 172 FCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPV--LNAWSEVSSMS-VGRAYSKIGILNNKLYAVGGVTRG-PGG-LTP 246 (474)
Q Consensus 172 r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~-~~~-~~~ 246 (474)
+..+++++++++|||+||... +.+++||+. +++|..+++|| .+|..+++++++++|||+||.... ..+ ...
T Consensus 29 ~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 29 FKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred ccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeE
Confidence 565678889999999999743 458999986 47899999998 589999999999999999997631 111 134
Q ss_pred CceEEEEeCCCCceEEccC-CCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcc----------------
Q 011957 247 LQSAEVFDPRTGLWSEILS-MPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPF---------------- 308 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~---------------- 308 (474)
++++++||+.+++|+.+++ +|.++.+ +++++ .+++||++||.....+
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~---------------~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~ 169 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAG---------------HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccc---------------eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhh
Confidence 6899999999999999985 3555554 55555 8999999999763200
Q ss_pred ----------------eeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC--CCceE--EE
Q 011957 309 ----------------FVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL--DSAKI--KV 368 (474)
Q Consensus 309 ----------------~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--~~~~v--~~ 368 (474)
......++||+.+++|+.+++ ++ ..++.+++ ++.++++|||+||.... ....+ +.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~-~p---~~~~~~~a-~v~~~~~iYv~GG~~~~~~~~~~~~~~~ 244 (376)
T PRK14131 170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE-SP---FLGTAGSA-VVIKGNKLWLINGEIKPGLRTDAVKQGK 244 (376)
T ss_pred hhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-CC---CCCCCcce-EEEECCEEEEEeeeECCCcCChhheEEE
Confidence 001234899999999999876 42 12344444 78899999999996322 22333 45
Q ss_pred EECCCCceEEeccCCCCCCC---CCCCCCeEEEeeCCEEEEEecCCC
Q 011957 369 YDYHDDTWKVVVGDVPLPNF---TDSESPYLLAGLLGKLHVITNDAN 412 (474)
Q Consensus 369 yd~~~~~W~~v~~~~p~~~~---~~~r~~~~~~~~~~~l~v~GG~~~ 412 (474)
||+++++|+++. .+|.+.. +..+..+.+++++++|||+||...
T Consensus 245 ~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~ 290 (376)
T PRK14131 245 FTGNNLKWQKLP-DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANF 290 (376)
T ss_pred ecCCCcceeecC-CCCCCCcCCcCCccceEeceeECCEEEEeeccCC
Confidence 678999999985 4443321 111122335678999999999643
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=234.17 Aligned_cols=221 Identities=18% Similarity=0.270 Sum_probs=187.4
Q ss_pred cCCCCccceeEEEeCCEEEEEcCcCCCcccc--eEEEEeCCCCceeec---CCCCCCcceeeEEEECCEEEEEeceecCC
Q 011957 167 LDRMGFCGCSIGAVDGCLYVLGGFSRALAMR--NVWRYDPVLNAWSEV---SSMSVGRAYSKIGILNNKLYAVGGVTRGP 241 (474)
Q Consensus 167 ~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~--~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 241 (474)
..|.+|..|+++.+++++||+||........ +++++|..+..|... ...|.+|++|.++.++++||+|||...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-- 133 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-- 133 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC--
Confidence 3577899999999999999999987654444 599999999999876 356789999999999999999999874
Q ss_pred CCCccCceEEEEeCCCCceEEcc---CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc-ceeccceEEE
Q 011957 242 GGLTPLQSAEVFDPRTGLWSEIL---SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP-FFVDVGGEVY 317 (474)
Q Consensus 242 ~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~-~~~~~gg~~y 317 (474)
....+++++.||+.|++|+.+. ..|.+|.+ |++++++++||||||.+... ..+++ ++|
T Consensus 134 -~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~---------------Hs~~~~g~~l~vfGG~~~~~~~~ndl--~i~ 195 (482)
T KOG0379|consen 134 -KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG---------------HSATVVGTKLVVFGGIGGTGDSLNDL--HIY 195 (482)
T ss_pred -CCCChhheEeccCCCCcEEEecCcCCCCCCccc---------------ceEEEECCEEEEECCccCcccceeee--eee
Confidence 2334789999999999999774 45788888 99999999999999988877 55555 999
Q ss_pred cCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCC--CCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCe
Q 011957 318 DPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG--ALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPY 395 (474)
Q Consensus 318 d~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~ 395 (474)
|+++.+|.++..... .|.+|.+|+ +++++++++|+||.. ....++++.+|+.+.+|.++. +.+..+.+|+.|
T Consensus 196 d~~~~~W~~~~~~g~--~P~pR~gH~-~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~---~~g~~p~~R~~h 269 (482)
T KOG0379|consen 196 DLETSTWSELDTQGE--APSPRYGHA-MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP---TGGDLPSPRSGH 269 (482)
T ss_pred ccccccceecccCCC--CCCCCCCce-EEEECCeEEEEeccccCCceecceEeeecccceeeecc---ccCCCCCCccee
Confidence 999999999987333 377888888 899999999999865 224689999999999998653 345778999999
Q ss_pred EEEeeCCEEEEEecCCCC
Q 011957 396 LLAGLLGKLHVITNDANH 413 (474)
Q Consensus 396 ~~~~~~~~l~v~GG~~~~ 413 (474)
.++..+++++|+||....
T Consensus 270 ~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 270 SLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred eeEEECCEEEEEcCCccc
Confidence 999999999999997775
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=4e-25 Score=225.04 Aligned_cols=255 Identities=18% Similarity=0.203 Sum_probs=202.0
Q ss_pred chhhhhhhhcCC--CccEEEEEEeecCCc--e--eEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceee
Q 011957 80 SELFSFRKELGT--TEEWLYILTKVEDDK--L--SWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKI 153 (474)
Q Consensus 80 ~~~~~~r~~~~~--~~~~l~v~gg~~~~~--~--~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 153 (474)
...+..|..+.. .++.+||+||..... . +++.||..+..|........
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~-------------------------- 108 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD-------------------------- 108 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCC--------------------------
Confidence 344445544443 378999999875332 1 59999999999987654332
Q ss_pred eeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCC-CcccceEEEEeCCCCceeecC---CCCCCcceeeEEEECC
Q 011957 154 ADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSR-ALAMRNVWRYDPVLNAWSEVS---SMSVGRAYSKIGILNN 229 (474)
Q Consensus 154 ~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~ 229 (474)
.|.||.+|++++++++||+|||.+. ....++++.||+.|++|+.+. .+|.+|.+|+++++++
T Consensus 109 --------------~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~ 174 (482)
T KOG0379|consen 109 --------------EPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT 174 (482)
T ss_pred --------------CCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC
Confidence 3467999999999999999999984 556889999999999999873 5789999999999999
Q ss_pred EEEEEeceecCCCCCccCceEEEEeCCCCceEEcc---CCCccccccccchhhccccccceeeEEEeCCEEEEeccCC-C
Q 011957 230 KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEIL---SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLY-F 305 (474)
Q Consensus 230 ~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~-~ 305 (474)
+|||+||.....+ .++++++||+++.+|+++. +.|.||.+ |++++++++++++||.+ +
T Consensus 175 ~l~vfGG~~~~~~---~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g---------------H~~~~~~~~~~v~gG~~~~ 236 (482)
T KOG0379|consen 175 KLVVFGGIGGTGD---SLNDLHIYDLETSTWSELDTQGEAPSPRYG---------------HAMVVVGNKLLVFGGGDDG 236 (482)
T ss_pred EEEEECCccCccc---ceeeeeeeccccccceecccCCCCCCCCCC---------------ceEEEECCeEEEEeccccC
Confidence 9999999873332 6899999999999999884 56788998 99999999999999999 5
Q ss_pred CcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC---CCceEEEEECCCCceEEeccC
Q 011957 306 WPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL---DSAKIKVYDYHDDTWKVVVGD 382 (474)
Q Consensus 306 ~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~v~~yd~~~~~W~~v~~~ 382 (474)
..++.|+ +.+|+.+.+|.++.. ...+|.+|++|. .+..+..++++||.... ...+++.||.+++.|.++...
T Consensus 237 ~~~l~D~--~~ldl~~~~W~~~~~--~g~~p~~R~~h~-~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~ 311 (482)
T KOG0379|consen 237 DVYLNDV--HILDLSTWEWKLLPT--GGDLPSPRSGHS-LTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESV 311 (482)
T ss_pred Cceecce--Eeeecccceeeeccc--cCCCCCCcceee-eEEECCEEEEEcCCcccccccccccccccccccceeeeecc
Confidence 5666665 999999999997764 344688899988 56999999999997552 477999999999999998632
Q ss_pred CCCCCCCCCCCCeEEEe
Q 011957 383 VPLPNFTDSESPYLLAG 399 (474)
Q Consensus 383 ~p~~~~~~~r~~~~~~~ 399 (474)
. ...+.+|..+..+.
T Consensus 312 ~--~~~~~~~~~~~~~~ 326 (482)
T KOG0379|consen 312 G--VVRPSPRLGHAAEL 326 (482)
T ss_pred c--ccccccccccccee
Confidence 2 12334444444443
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=5.6e-25 Score=205.30 Aligned_cols=225 Identities=17% Similarity=0.244 Sum_probs=179.8
Q ss_pred ccCCCCccceeEEEe--CCEEEEEcCcC--C--CcccceEEEEeCCCCceeec--CCCCCCcceeeEEEEC-CEEEEEec
Q 011957 166 ALDRMGFCGCSIGAV--DGCLYVLGGFS--R--ALAMRNVWRYDPVLNAWSEV--SSMSVGRAYSKIGILN-NKLYAVGG 236 (474)
Q Consensus 166 ~~~p~pr~~~~~~~~--~~~lyv~GG~~--~--~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~-~~lyv~GG 236 (474)
..+|.||..+++++. .+.|++|||.- + .-..++++.||..+++|+++ |+.|.||+.|.++++- +.+|++||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 357889999888875 56899999953 2 23479999999999999987 6789999999998885 89999999
Q ss_pred eecCCCCCc--cCceEEEEeCCCCceEEcc--CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc----c
Q 011957 237 VTRGPGGLT--PLQSAEVFDPRTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP----F 308 (474)
Q Consensus 237 ~~~~~~~~~--~~~~~~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~----~ 308 (474)
.-...+... -..++|.||..+++|+.+. .-|.||++ |-+++...+|++|||+...+ +
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG---------------HRMvawK~~lilFGGFhd~nr~y~Y 205 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG---------------HRMVAWKRQLILFGGFHDSNRDYIY 205 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCcc---------------ceeEEeeeeEEEEcceecCCCceEE
Confidence 765544332 2578999999999999884 56888999 99999999999999987764 3
Q ss_pred eeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC----------CCceEEEEECCC-----
Q 011957 309 FVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL----------DSAKIKVYDYHD----- 373 (474)
Q Consensus 309 ~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~----------~~~~v~~yd~~~----- 373 (474)
++| .++||+.+=+|+++.+ .. .+|.+|.|+..++.-+|.|||+||+... ..+++|.++++.
T Consensus 206 yND--vy~FdLdtykW~Klep-sg-a~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dK 281 (521)
T KOG1230|consen 206 YND--VYAFDLDTYKWSKLEP-SG-AGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDK 281 (521)
T ss_pred eee--eEEEeccceeeeeccC-CC-CCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcc
Confidence 333 4999999999999987 33 3688999987445559999999997432 135899999988
Q ss_pred CceEEeccCCCCCCCCCCCCCeEEEeeC-CEEEEEecCCC
Q 011957 374 DTWKVVVGDVPLPNFTDSESPYLLAGLL-GKLHVITNDAN 412 (474)
Q Consensus 374 ~~W~~v~~~~p~~~~~~~r~~~~~~~~~-~~l~v~GG~~~ 412 (474)
=+|+.+. |.+.-|.+|.++++++.- ++-+.|||..+
T Consensus 282 w~W~kvk---p~g~kPspRsgfsv~va~n~kal~FGGV~D 318 (521)
T KOG1230|consen 282 WVWTKVK---PSGVKPSPRSGFSVAVAKNHKALFFGGVCD 318 (521)
T ss_pred eeEeecc---CCCCCCCCCCceeEEEecCCceEEecceec
Confidence 3677775 456678899999988665 59999999554
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=202.41 Aligned_cols=267 Identities=14% Similarity=0.172 Sum_probs=196.5
Q ss_pred CCCCcHHHHHHhhhccCccchhhHHHhhHHHHHh-hcCchhhhhhhhcC----CCccEEEEEEeec--CCc----eeEEE
Q 011957 43 IPSLPDEISLQILARIPRIYYLNVKLVSRAWKAA-ITSSELFSFRKELG----TTEEWLYILTKVE--DDK----LSWHA 111 (474)
Q Consensus 43 ~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~l-i~s~~~~~~r~~~~----~~~~~l~v~gg~~--~~~----~~~~~ 111 (474)
.+.|-++.+.+|+..+..+.. ..+ +.+-+-+..|.... ...+-|+++||.- ..+ .+++.
T Consensus 33 ~~e~de~~i~~~iq~~eaK~~----------e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~ 102 (521)
T KOG1230|consen 33 NEELDEADIAEIIQSLEAKQI----------EHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYS 102 (521)
T ss_pred CcccchHHHHHHHHhhhhhcc----------ceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeE
Confidence 345667777778777654432 111 11112223333222 1234788898853 222 27899
Q ss_pred eCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCCccceeEEEeC-CEEEEEcCc
Q 011957 112 LDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVD-GCLYVLGGF 190 (474)
Q Consensus 112 yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~-~~lyv~GG~ 190 (474)
||..++.|..+-... +|.||++|.++++- |.+|+|||.
T Consensus 103 Yn~k~~eWkk~~spn-----------------------------------------~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 103 YNTKKNEWKKVVSPN-----------------------------------------APPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred EeccccceeEeccCC-----------------------------------------CcCCCccceeEEeccCeEEEeccc
Confidence 999999999975322 46679999988874 899999996
Q ss_pred CCC------cccceEEEEeCCCCceeec--CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEE
Q 011957 191 SRA------LAMRNVWRYDPVLNAWSEV--SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSE 262 (474)
Q Consensus 191 ~~~------~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~ 262 (474)
-.. -...++|.||+.+++|+++ +.-|.||++|.+++...+|++|||+.+......+.+++++||+.+-+|++
T Consensus 142 faSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K 221 (521)
T KOG1230|consen 142 FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK 221 (521)
T ss_pred cCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeee
Confidence 421 2368999999999999997 56799999999999999999999998665455689999999999999999
Q ss_pred ccC---CCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCc---------ceeccceEEEcCCC-----Cce
Q 011957 263 ILS---MPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWP---------FFVDVGGEVYDPDV-----NSW 324 (474)
Q Consensus 263 ~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~---------~~~~~gg~~yd~~t-----~~W 324 (474)
+.+ -|.||++ +++.+. +|.|||.||++... .+.|+ +..++++ =.|
T Consensus 222 lepsga~PtpRSG---------------cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDm--f~L~p~~~~~dKw~W 284 (521)
T KOG1230|consen 222 LEPSGAGPTPRSG---------------CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDM--FLLKPEDGREDKWVW 284 (521)
T ss_pred ccCCCCCCCCCCc---------------ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeee--eeecCCcCCCcceeE
Confidence 854 4788988 777776 99999999976532 22222 7788887 468
Q ss_pred EEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC----------CCCceEEEEECCCCceEEe
Q 011957 325 VEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA----------LDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~yd~~~~~W~~v 379 (474)
+++.+.... |.+|.+.+.++.-+++-+.|||.-. ...++++.||++.++|.+.
T Consensus 285 ~kvkp~g~k--PspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 285 TKVKPSGVK--PSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeccCCCCC--CCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 888763333 7788888877777889999999422 2357999999999999875
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=8.3e-24 Score=201.91 Aligned_cols=281 Identities=12% Similarity=0.212 Sum_probs=205.6
Q ss_pred HHHHhhc-CchhhhhhhhcCC--CccEEEEEEeecCCce-eEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeee
Q 011957 72 AWKAAIT-SSELFSFRKELGT--TEEWLYILTKVEDDKL-SWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVL 147 (474)
Q Consensus 72 ~W~~li~-s~~~~~~r~~~~~--~~~~l~v~gg~~~~~~-~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~ 147 (474)
+||++.. ..+.++.|+.+.. ..+.+.+|||-+.+.. ++++||..+++|..-+.-.+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGD-------------------- 77 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGD-------------------- 77 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCC--------------------
Confidence 5877654 3456666665553 3667888887655533 78999999999975322111
Q ss_pred ccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCC-CcccceEEEEeCCCCceeecC-------CCCCCc
Q 011957 148 GSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSR-ALAMRNVWRYDPVLNAWSEVS-------SMSVGR 219 (474)
Q Consensus 148 ~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~-------~~p~~r 219 (474)
-|.+-..|..+..+.+||+|||..+ ..+.|+++.+-.....|+++. ++|-||
T Consensus 78 --------------------iPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPR 137 (830)
T KOG4152|consen 78 --------------------IPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPR 137 (830)
T ss_pred --------------------CCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCc
Confidence 1223556777888999999999765 456788877766677788873 467899
Q ss_pred ceeeEEEECCEEEEEeceecCCCC-----CccCceEEEEeCCCC----ceEEc---cCCCccccccccchhhccccccce
Q 011957 220 AYSKIGILNNKLYAVGGVTRGPGG-----LTPLQSAEVFDPRTG----LWSEI---LSMPFSKAQVLPTAFLADLLKPIA 287 (474)
Q Consensus 220 ~~~~~~~~~~~lyv~GG~~~~~~~-----~~~~~~~~~yd~~t~----~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~ 287 (474)
.+|+..++++|.|+|||..++.+. ..+++++++.++.-+ .|... ..+|.||..
T Consensus 138 lGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES--------------- 202 (830)
T KOG4152|consen 138 LGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES--------------- 202 (830)
T ss_pred cCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc---------------
Confidence 999999999999999998654322 247899999988754 38744 568889998
Q ss_pred eeEEEe------CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC-
Q 011957 288 TGMSSY------RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA- 360 (474)
Q Consensus 288 ~~~~~~------~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~- 360 (474)
|.++++ ..++||+||+++-.. .|. +..|++|-+|.+....... |.+|.-|+ ++.++++||||||.-.
T Consensus 203 HTAViY~eKDs~~skmvvyGGM~G~RL-gDL--W~Ldl~Tl~W~kp~~~G~~--PlPRSLHs-a~~IGnKMyvfGGWVPl 276 (830)
T KOG4152|consen 203 HTAVIYTEKDSKKSKMVVYGGMSGCRL-GDL--WTLDLDTLTWNKPSLSGVA--PLPRSLHS-ATTIGNKMYVFGGWVPL 276 (830)
T ss_pred ceeEEEEeccCCcceEEEEcccccccc-cce--eEEecceeecccccccCCC--CCCccccc-ceeecceeEEecceeee
Confidence 888877 458999999877432 222 8999999999997653333 55566566 8999999999999310
Q ss_pred ----C----------CCceEEEEECCCCceEEeccC-CCCCCCCCCCCCeEEEeeCCEEEEEecCCCC
Q 011957 361 ----L----------DSAKIKVYDYHDDTWKVVVGD-VPLPNFTDSESPYLLAGLLGKLHVITNDANH 413 (474)
Q Consensus 361 ----~----------~~~~v~~yd~~~~~W~~v~~~-~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~ 413 (474)
. ..+.+-.+|+++..|+.+-.. +.....|.+|.+|.++.++.+|||..|.++.
T Consensus 277 ~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 277 VMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred eccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchh
Confidence 0 134788899999999987432 2233467889999999999999999997664
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.2e-23 Score=199.01 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=189.2
Q ss_pred CCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceee---cCCCCCCcceeeEEEECCEEEEEeceecCCCCC
Q 011957 168 DRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSE---VSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGL 244 (474)
Q Consensus 168 ~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 244 (474)
-|.||++|-++++...|.+|||-++ ....++.+||..+|+|.. ..+.|.+-..|+.+..+.+||+|||.....
T Consensus 29 vPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYG--- 104 (830)
T KOG4152|consen 29 VPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYG--- 104 (830)
T ss_pred CCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeec---
Confidence 4667999999999999999999754 457889999999999975 358888889999999999999999987432
Q ss_pred ccCceEEEEeCCCCceEEcc-------CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc---------c
Q 011957 245 TPLQSAEVFDPRTGLWSEIL-------SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP---------F 308 (474)
Q Consensus 245 ~~~~~~~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~---------~ 308 (474)
.+.++++......-.|+++. +.|-||-+ |+...+++|-|+|||..+.. +
T Consensus 105 kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlG---------------HSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 105 KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLG---------------HSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccC---------------ceeEEeccEeEEeccccccccCcccccchh
Confidence 34555544433444556663 34667777 89999999999999976542 2
Q ss_pred eeccceEEEcCCCC----ceEEcCCCCCCCCCccccCcceEEEE------CCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 309 FVDVGGEVYDPDVN----SWVEMPVGMGEGWPVRQAGTKLSITV------EGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 309 ~~~~gg~~yd~~t~----~W~~~~~~~~~~~p~~~~~~~~~~~~------~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
++|+ ++.++.-+ .|..... ....|.+|..|. ++++ ..+|||+||..+...+++|.+|+++..|.+
T Consensus 170 LnDl--Y~leL~~Gsgvv~W~ip~t--~Gv~P~pRESHT-AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 170 LNDL--YILELRPGSGVVAWDIPIT--YGVLPPPRESHT-AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNK 244 (830)
T ss_pred hcce--EEEEeccCCceEEEecccc--cCCCCCCcccce-eEEEEeccCCcceEEEEcccccccccceeEEecceeeccc
Confidence 3333 33343322 4887544 223366777777 5555 357999999988889999999999999999
Q ss_pred eccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEe-ecCCCCCCCCCCCCCCccccCCCCCCcccceeeeee
Q 011957 379 VVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQAD-VKNHFASMPSASSSSFHDCINEPASGSETDTWKMIA 457 (474)
Q Consensus 379 v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~ 457 (474)
..- .+..|.+|+.|+++.+|||+|||||.... +.-| -..+-+.+|.+.++..+- |..+..|+.|-
T Consensus 245 p~~---~G~~PlPRSLHsa~~IGnKMyvfGGWVPl----~~~~~~~~~hekEWkCTssl~cl-------Nldt~~W~tl~ 310 (830)
T KOG4152|consen 245 PSL---SGVAPLPRSLHSATTIGNKMYVFGGWVPL----VMDDVKVATHEKEWKCTSSLACL-------NLDTMAWETLL 310 (830)
T ss_pred ccc---cCCCCCCcccccceeecceeEEecceeee----eccccccccccceeeeccceeee-------eecchheeeee
Confidence 642 24556779999999999999999995432 1112 123455667776655544 45568898885
Q ss_pred c-----cccCCcceeeeeE
Q 011957 458 I-----RNAGSAELVSCQT 471 (474)
Q Consensus 458 ~-----~~~~~~~~~~c~v 471 (474)
. .--.+.+.-||+|
T Consensus 311 ~d~~ed~tiPR~RAGHCAv 329 (830)
T KOG4152|consen 311 MDTLEDNTIPRARAGHCAV 329 (830)
T ss_pred eccccccccccccccceeE
Confidence 5 1133444446655
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=147.75 Aligned_cols=258 Identities=19% Similarity=0.315 Sum_probs=173.0
Q ss_pred CccEEEEEEeecCCceeEEEeCCC--CCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCC
Q 011957 92 TEEWLYILTKVEDDKLSWHALDPL--AGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDR 169 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 169 (474)
.++.+||..|... ..++..|.. ...|++++..|..
T Consensus 45 ig~~~YVGLGs~G--~afy~ldL~~~~k~W~~~a~FpG~----------------------------------------- 81 (381)
T COG3055 45 IGDTVYVGLGSAG--TAFYVLDLKKPGKGWTKIADFPGG----------------------------------------- 81 (381)
T ss_pred ecceEEEEeccCC--ccceehhhhcCCCCceEcccCCCc-----------------------------------------
Confidence 4668888766333 367777764 4589999988875
Q ss_pred CCccceeEEEeCCEEEEEcCcCCC-----cccceEEEEeCCCCceeecC-CCCCCcceeeEEEECC-EEEEEeceecCCC
Q 011957 170 MGFCGCSIGAVDGCLYVLGGFSRA-----LAMRNVWRYDPVLNAWSEVS-SMSVGRAYSKIGILNN-KLYAVGGVTRGPG 242 (474)
Q Consensus 170 ~pr~~~~~~~~~~~lyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~ 242 (474)
+|...+.++++++||||||.... ...+++++|||.+|+|+++. ..|..-.++.++.+++ +||++||.+....
T Consensus 82 -~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if 160 (381)
T COG3055 82 -ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIF 160 (381)
T ss_pred -ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhh
Confidence 58888999999999999998532 34789999999999999985 4566777888899987 9999999864210
Q ss_pred ------------------------------CCccCceEEEEeCCCCceEEccCCCc-cccccccchhhccccccceeeEE
Q 011957 243 ------------------------------GLTPLQSAEVFDPRTGLWSEILSMPF-SKAQVLPTAFLADLLKPIATGMS 291 (474)
Q Consensus 243 ------------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~ 291 (474)
.......+..|||++++|+.+...|. ++++ ++.+
T Consensus 161 ~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG---------------sa~~ 225 (381)
T COG3055 161 NGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG---------------SAVV 225 (381)
T ss_pred hhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC---------------ccee
Confidence 01124678899999999999986663 3444 4444
Q ss_pred EeCCEEEEeccCCCCcceeccceEEEcCC--CCceEEcCCCCCCCCCccccCcc--eEEEECCEEEEEcCCCCC------
Q 011957 292 SYRGRLFVPQSLYFWPFFVDVGGEVYDPD--VNSWVEMPVGMGEGWPVRQAGTK--LSITVEGELYALDPSGAL------ 361 (474)
Q Consensus 292 ~~~~~iyv~gG~~~~~~~~~~gg~~yd~~--t~~W~~~~~~~~~~~p~~~~~~~--~~~~~~~~lyv~GG~~~~------ 361 (474)
.-++++.++.|.-.. .+......++|.. ..+|..++. .+........+.+ ..-..++.+.|.||-+..
T Consensus 226 ~~~n~~~lInGEiKp-GLRt~~~k~~~~~~~~~~w~~l~~-lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y 303 (381)
T COG3055 226 IKGNKLTLINGEIKP-GLRTAEVKQADFGGDNLKWLKLSD-LPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAY 303 (381)
T ss_pred ecCCeEEEEcceecC-CccccceeEEEeccCceeeeeccC-CCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHH
Confidence 556768776553221 1111222444443 557998865 2211111112211 123567888888883210
Q ss_pred --------------CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEE
Q 011957 362 --------------DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVL 418 (474)
Q Consensus 362 --------------~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 418 (474)
-..+|+.+| .+.|+.+ +.+| .+......+..+++||++||+..+...+.
T Consensus 304 ~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~-GeLp-----~~l~YG~s~~~nn~vl~IGGE~~~Gka~~ 366 (381)
T COG3055 304 KNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV-GELP-----QGLAYGVSLSYNNKVLLIGGETSGGKATT 366 (381)
T ss_pred HhcccccccchhhhhhceEEEEc--CCceeee-cccC-----CCccceEEEecCCcEEEEccccCCCeeee
Confidence 124788888 8999998 4455 34444566788999999999877755543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.49 E-value=1.2e-12 Score=121.77 Aligned_cols=212 Identities=19% Similarity=0.323 Sum_probs=141.1
Q ss_pred eeEEEeCCEEEEEcCcCCCcccceEEEEeCCC--CceeecCCCC-CCcceeeEEEECCEEEEEeceecCCCC-CccCceE
Q 011957 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVL--NAWSEVSSMS-VGRAYSKIGILNNKLYAVGGVTRGPGG-LTPLQSA 250 (474)
Q Consensus 175 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~~~~~~ 250 (474)
-+.+.+++.+||-=|..+ ...+..|+.. ..|++++..| .+|.....++++++||||||....... ....+++
T Consensus 40 G~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~ 115 (381)
T COG3055 40 GAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDA 115 (381)
T ss_pred cccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeee
Confidence 356677889999655322 4567777764 5799999887 478889999999999999998754332 3457899
Q ss_pred EEEeCCCCceEEccCC-CccccccccchhhccccccceeeEEEeCC-EEEEeccCCCCc---ceeccce-----------
Q 011957 251 EVFDPRTGLWSEILSM-PFSKAQVLPTAFLADLLKPIATGMSSYRG-RLFVPQSLYFWP---FFVDVGG----------- 314 (474)
Q Consensus 251 ~~yd~~t~~W~~~~~~-p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~---~~~~~gg----------- 314 (474)
++|||.+|+|+++... |....+ +.++.+++ +||++||.+..- ++.|++-
T Consensus 116 Y~y~p~~nsW~kl~t~sP~gl~G---------------~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i 180 (381)
T COG3055 116 YRYDPSTNSWHKLDTRSPTGLVG---------------ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKI 180 (381)
T ss_pred EEecCCCChhheecccccccccc---------------ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHH
Confidence 9999999999988643 333333 67777777 999999976542 2222222
Q ss_pred ------------------EEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC--CCCceEEEEECC--
Q 011957 315 ------------------EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA--LDSAKIKVYDYH-- 372 (474)
Q Consensus 315 ------------------~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~--~~~~~v~~yd~~-- 372 (474)
..|||.++.|+.+..... ..+++.+ .+.-++++.++-|.-. .....+..++..
T Consensus 181 ~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf----~~~aGsa-~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 181 IAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF----YGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred HHHHhCCCHHHhcccccccccccccchhhhcCcCcc----cCccCcc-eeecCCeEEEEcceecCCccccceeEEEeccC
Confidence 579999999999874121 2344432 4555677999988532 234456666665
Q ss_pred CCceEEeccCCCCCCCCCC--CCCeEEEeeCCEEEEEecCC
Q 011957 373 DDTWKVVVGDVPLPNFTDS--ESPYLLAGLLGKLHVITNDA 411 (474)
Q Consensus 373 ~~~W~~v~~~~p~~~~~~~--r~~~~~~~~~~~l~v~GG~~ 411 (474)
.-+|..+. .+|.+..... -.+.-.-..++.++|.||..
T Consensus 256 ~~~w~~l~-~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAn 295 (381)
T COG3055 256 NLKWLKLS-DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGAN 295 (381)
T ss_pred ceeeeecc-CCCCCCCCCccccceeccceeCCeEEEecCCC
Confidence 45899984 4443322222 11222224578888888843
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.34 E-value=2.6e-12 Score=88.32 Aligned_cols=49 Identities=35% Similarity=0.609 Sum_probs=46.0
Q ss_pred CccceeEEEeCCEEEEEcCcCC-CcccceEEEEeCCCCceeecCCCCCCc
Q 011957 171 GFCGCSIGAVDGCLYVLGGFSR-ALAMRNVWRYDPVLNAWSEVSSMSVGR 219 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~p~~r 219 (474)
||.+|++++++++|||+||... ....+++++||+.|++|+++++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5889999999999999999987 677999999999999999999999987
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.24 E-value=1.5e-11 Score=84.43 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=45.1
Q ss_pred CcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccc
Q 011957 218 GRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSK 270 (474)
Q Consensus 218 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 270 (474)
||.+|++++++++|||+||.... ...++++++||+++++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68999999999999999998732 457899999999999999999999886
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.22 E-value=9.7e-12 Score=119.77 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=134.8
Q ss_pred CCCCceeecCCC----------CCCcceeeEEEECC--EEEEEeceecCCCCCccCceEEEEeCCCCceEEcc---CCCc
Q 011957 204 PVLNAWSEVSSM----------SVGRAYSKIGILNN--KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEIL---SMPF 268 (474)
Q Consensus 204 ~~t~~W~~~~~~----------p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~ 268 (474)
+-+-+|.++++. |..|.+|.++...+ .||+.||.+ |.+.+.++|.|+...+.|+.+. ..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd----G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD----GTQDLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc----cchhHHHHHhhcCCcceeEEeecCCCCCc
Confidence 446678887532 56799999998865 999999996 6667899999999999999874 3566
Q ss_pred cccccccchhhccccccceeeEEEeCC--EEEEeccCCCCcceec----cceEEEcCCCCceEEcCCCC-CCCCCccccC
Q 011957 269 SKAQVLPTAFLADLLKPIATGMSSYRG--RLFVPQSLYFWPFFVD----VGGEVYDPDVNSWVEMPVGM-GEGWPVRQAG 341 (474)
Q Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~~~~~~--~iyv~gG~~~~~~~~~----~gg~~yd~~t~~W~~~~~~~-~~~~p~~~~~ 341 (474)
.|.. |-++.... |+|++|-+-+...-.. ...++||..++.|..+.-.- .++-|.....
T Consensus 312 ~RsC---------------HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD 376 (723)
T KOG2437|consen 312 ARSC---------------HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD 376 (723)
T ss_pred chhh---------------hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec
Confidence 6665 77776554 9999987654322111 12289999999999886421 1244666666
Q ss_pred cceEEEECCE--EEEEcCCCC----CCCceEEEEECCCCceEEeccC----CCCCCCCCCCCCeEE--EeeCCEEEEEec
Q 011957 342 TKLSITVEGE--LYALDPSGA----LDSAKIKVYDYHDDTWKVVVGD----VPLPNFTDSESPYLL--AGLLGKLHVITN 409 (474)
Q Consensus 342 ~~~~~~~~~~--lyv~GG~~~----~~~~~v~~yd~~~~~W~~v~~~----~p~~~~~~~r~~~~~--~~~~~~l~v~GG 409 (474)
|. +++.+++ |||+||..- .....+++||.....|..++.. -|.-.....|.++.+ ..-++++|++||
T Consensus 377 Hq-M~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fgg 455 (723)
T KOG2437|consen 377 HQ-MCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGG 455 (723)
T ss_pred ce-eeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccC
Confidence 66 8888887 999999622 2346899999999999987531 122223334555444 345778999999
Q ss_pred CCCC
Q 011957 410 DANH 413 (474)
Q Consensus 410 ~~~~ 413 (474)
....
T Consensus 456 q~s~ 459 (723)
T KOG2437|consen 456 QRSK 459 (723)
T ss_pred cccc
Confidence 6554
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.12 E-value=3.9e-11 Score=115.69 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=128.2
Q ss_pred CCCccceeEEEeCC--EEEEEcCcCCCcccceEEEEeCCCCceeec---CCCCCCcceeeEEEECC--EEEEEeceecCC
Q 011957 169 RMGFCGCSIGAVDG--CLYVLGGFSRALAMRNVWRYDPVLNAWSEV---SSMSVGRAYSKIGILNN--KLYAVGGVTRGP 241 (474)
Q Consensus 169 p~pr~~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~ 241 (474)
|..|.+|.++...+ .||+.||+++.+.+.++|.|+...+.|..+ ...|..|..|.++.... |||+.|-+-...
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 44589999988755 999999999999999999999999999987 45789999999998865 999999875432
Q ss_pred CC--CccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCE--EEEeccCCCCcc-eeccceEE
Q 011957 242 GG--LTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGR--LFVPQSLYFWPF-FVDVGGEV 316 (474)
Q Consensus 242 ~~--~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--iyv~gG~~~~~~-~~~~gg~~ 316 (474)
.. .....++|+||..++.|.-+..-...-.+ |++ .|-|.+++..++ |||+||..-... ...-|.++
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGG--P~~-------vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYa 408 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGG--PKL-------VFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYA 408 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCC--cce-------eecceeeEecCcceEEEecCeeccCCCccccceEE
Confidence 21 12357899999999999977532211111 111 112888888877 999999655433 22134489
Q ss_pred EcCCCCceEEcCCCCCC-----CCCccccCcc-eEEEECCEEEEEcCCC
Q 011957 317 YDPDVNSWVEMPVGMGE-----GWPVRQAGTK-LSITVEGELYALDPSG 359 (474)
Q Consensus 317 yd~~t~~W~~~~~~~~~-----~~p~~~~~~~-~~~~~~~~lyv~GG~~ 359 (474)
||.....|..+...... .....|.++. -++.-+..+|++||+.
T Consensus 409 f~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 409 FNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred EecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 99999999986441110 1122344443 1345567899999964
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.08 E-value=1.5e-10 Score=78.45 Aligned_cols=46 Identities=30% Similarity=0.552 Sum_probs=42.6
Q ss_pred CccceeEEEeCCEEEEEcCcCC-CcccceEEEEeCCCCceeecCCCC
Q 011957 171 GFCGCSIGAVDGCLYVLGGFSR-ALAMRNVWRYDPVLNAWSEVSSMS 216 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~p 216 (474)
||..|++++++++|||+||.+. ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999987 778999999999999999999986
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.07 E-value=2.6e-10 Score=77.26 Aligned_cols=47 Identities=36% Similarity=0.685 Sum_probs=42.0
Q ss_pred CcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCC
Q 011957 218 GRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMP 267 (474)
Q Consensus 218 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 267 (474)
||.+|++++++++|||+||... ....++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999984 2457899999999999999999886
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.01 E-value=6.9e-10 Score=75.72 Aligned_cols=47 Identities=23% Similarity=0.607 Sum_probs=43.1
Q ss_pred CCEEEEEcCcC--CCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE
Q 011957 181 DGCLYVLGGFS--RALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL 227 (474)
Q Consensus 181 ~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 227 (474)
+++|||+||.+ ....++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57899999998 567799999999999999999999999999999864
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.93 E-value=2.8e-09 Score=72.69 Aligned_cols=46 Identities=35% Similarity=0.707 Sum_probs=41.5
Q ss_pred CccceeEEEeCCEEEEEcCc---CCCcccceEEEEeCCCCceeecCCCC
Q 011957 171 GFCGCSIGAVDGCLYVLGGF---SRALAMRNVWRYDPVLNAWSEVSSMS 216 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~p 216 (474)
||..|++++++++|||+||. +.....+++++||+.+++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 44567899999999999999999875
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.91 E-value=3.9e-09 Score=71.94 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=41.4
Q ss_pred CcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCC
Q 011957 218 GRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMP 267 (474)
Q Consensus 218 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 267 (474)
||+.|++++++++|||+||+. ........+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~-~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYG-TDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcc-cCCCCcccceeEEEECCCCEEeecCCCC
Confidence 689999999999999999991 1123456899999999999999998875
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.89 E-value=1.9e-09 Score=73.67 Aligned_cols=47 Identities=28% Similarity=0.601 Sum_probs=31.3
Q ss_pred CccceeEEEe-CCEEEEEcCcCCC-cccceEEEEeCCCCceeecCCCCC
Q 011957 171 GFCGCSIGAV-DGCLYVLGGFSRA-LAMRNVWRYDPVLNAWSEVSSMSV 217 (474)
Q Consensus 171 pr~~~~~~~~-~~~lyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~p~ 217 (474)
||.+|+++.+ ++.|||+||.+.. ...+++|+||+.+++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999988 5899999999875 689999999999999999988873
No 39
>smart00612 Kelch Kelch domain.
Probab=98.84 E-value=5.1e-09 Score=70.69 Aligned_cols=47 Identities=32% Similarity=0.651 Sum_probs=42.5
Q ss_pred EEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECC
Q 011957 183 CLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNN 229 (474)
Q Consensus 183 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 229 (474)
+||++||.......+++++||+.+++|+.+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766678999999999999999999999999999988764
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.81 E-value=7.8e-09 Score=70.56 Aligned_cols=47 Identities=30% Similarity=0.526 Sum_probs=31.1
Q ss_pred CcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCC
Q 011957 218 GRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMP 267 (474)
Q Consensus 218 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 267 (474)
||.+|+++.+ +++|||+||..... ..++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 59999999997432 47899999999999999998887
No 41
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.73 E-value=4.5e-06 Score=77.38 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=115.5
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCccee----eEEEEC-----CEEEEEeceecCCCCCccCce
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYS----KIGILN-----NKLYAVGGVTRGPGGLTPLQS 249 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~----~~~~~~-----~~lyv~GG~~~~~~~~~~~~~ 249 (474)
.++|.|++..+ ..+.++||.|++|+.+|+.+.++... ....++ -||..+.... .......
T Consensus 3 sCnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~----~~~~~~~ 71 (230)
T TIGR01640 3 PCDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS----GNRNQSE 71 (230)
T ss_pred ccceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec----CCCCCcc
Confidence 35677765532 57899999999999998765432111 111111 2555554321 1112357
Q ss_pred EEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cC
Q 011957 250 AEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MP 328 (474)
Q Consensus 250 ~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~ 328 (474)
+++|+..+++|+.+...+...... ...+.++|.||-+......... .....||..+++|++ ++
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~--------------~~~v~~~G~lyw~~~~~~~~~~--~~IvsFDl~~E~f~~~i~ 135 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLK--------------SRGVCINGVLYYLAYTLKTNPD--YFIVSFDVSSERFKEFIP 135 (230)
T ss_pred EEEEEeCCCCccccccCCCCcccc--------------CCeEEECCEEEEEEEECCCCCc--EEEEEEEcccceEeeeee
Confidence 899999999999987433211110 2257789999887642211110 134899999999995 65
Q ss_pred CCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEE-CCCCceEEeccCCCCCCCCCCC--CCeEEEeeCCEEE
Q 011957 329 VGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYD-YHDDTWKVVVGDVPLPNFTDSE--SPYLLAGLLGKLH 405 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd-~~~~~W~~v~~~~p~~~~~~~r--~~~~~~~~~~~l~ 405 (474)
.+... . .......++.++|+|.++........-+||+.+ ...++|+++- .++.+..+..+ .....+..+|+|+
T Consensus 136 ~P~~~--~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~-~i~~~~~~~~~~~~~~~~~~~~g~I~ 211 (230)
T TIGR01640 136 LPCGN--S-DSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLF-TVPIPPLPDLVDDNFLSGFTDKGEIV 211 (230)
T ss_pred cCccc--c-ccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEE-EEcCcchhhhhhheeEeEEeeCCEEE
Confidence 42111 1 011122378889999998754322235788875 4456799852 33321111111 1234456778888
Q ss_pred EEecC
Q 011957 406 VITND 410 (474)
Q Consensus 406 v~GG~ 410 (474)
+....
T Consensus 212 ~~~~~ 216 (230)
T TIGR01640 212 LCCED 216 (230)
T ss_pred EEeCC
Confidence 87764
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.70 E-value=3.6e-08 Score=67.16 Aligned_cols=43 Identities=37% Similarity=0.591 Sum_probs=37.8
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
+++|||+||... .+...++++++||+.+++|++++++|.+|..
T Consensus 1 g~~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~ 43 (49)
T PF13415_consen 1 GNKLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSG 43 (49)
T ss_pred CCEEEEECCcCC--CCCCEecCEEEEECCCCEEEECCCCCCCccc
Confidence 589999999874 2345789999999999999999999999998
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.63 E-value=9e-07 Score=81.21 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=99.6
Q ss_pred eEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEE
Q 011957 108 SWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVL 187 (474)
Q Consensus 108 ~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~ 187 (474)
.-..||+.+++++.+...... .|+-.+..-+|.+.+.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~-------------------------------------------FCSgg~~L~dG~ll~t 83 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDT-------------------------------------------FCSGGAFLPDGRLLQT 83 (243)
T ss_pred EEEEEecCCCcEEeccCCCCC-------------------------------------------cccCcCCCCCCCEEEe
Confidence 456799999999887644333 3333444568999999
Q ss_pred cCcCCCcccceEEEEeCCC----CceeecC-CCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC---
Q 011957 188 GGFSRALAMRNVWRYDPVL----NAWSEVS-SMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG--- 258 (474)
Q Consensus 188 GG~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~--- 258 (474)
||.... .+.+-.|+|.+ ..|.+.+ .|..+|.+.++..+ +|+++|+||.. ..+.|.|.+...
T Consensus 84 GG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~--------~~t~E~~P~~~~~~~ 153 (243)
T PF07250_consen 84 GGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN--------NPTYEFWPPKGPGPG 153 (243)
T ss_pred CCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC--------CCcccccCCccCCCC
Confidence 997543 45677888876 6798876 59999999998887 79999999975 123444444221
Q ss_pred --ceEEccCC----CccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce-EEcCCCC
Q 011957 259 --LWSEILSM----PFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW-VEMPVGM 331 (474)
Q Consensus 259 --~W~~~~~~----p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W-~~~~~~~ 331 (474)
.|..+... +..-+- +....-+|+|++++. .+...||+.++++ ++++. +
T Consensus 154 ~~~~~~l~~~~~~~~~nlYP---------------~~~llPdG~lFi~an---------~~s~i~d~~~n~v~~~lP~-l 208 (243)
T PF07250_consen 154 PVTLPFLSQTSDTLPNNLYP---------------FVHLLPDGNLFIFAN---------RGSIIYDYKTNTVVRTLPD-L 208 (243)
T ss_pred ceeeecchhhhccCccccCc---------------eEEEcCCCCEEEEEc---------CCcEEEeCCCCeEEeeCCC-C
Confidence 12222211 111111 555667999999887 4458999999987 67776 5
Q ss_pred CC
Q 011957 332 GE 333 (474)
Q Consensus 332 ~~ 333 (474)
+.
T Consensus 209 Pg 210 (243)
T PF07250_consen 209 PG 210 (243)
T ss_pred CC
Confidence 43
No 44
>smart00612 Kelch Kelch domain.
Probab=98.63 E-value=4.9e-08 Score=65.78 Aligned_cols=39 Identities=44% Similarity=0.821 Sum_probs=34.2
Q ss_pred EEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 230 KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 230 ~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
+|||+||.. +...++++++||+.+++|+.+++|+.+|..
T Consensus 1 ~iyv~GG~~----~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 39 (47)
T smart00612 1 KIYVVGGFD----GGQRLKSVEVYDPETNKWTPLPSMPTPRSG 39 (47)
T ss_pred CEEEEeCCC----CCceeeeEEEECCCCCeEccCCCCCCcccc
Confidence 589999975 234578999999999999999999999988
No 45
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.53 E-value=6.3e-08 Score=65.31 Aligned_cols=42 Identities=36% Similarity=0.615 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhh
Q 011957 43 IPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFS 84 (474)
Q Consensus 43 ~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~ 84 (474)
|..||+|++.+||.+||..++.+++.|||+|+.++.++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875543
No 46
>PLN02772 guanylate kinase
Probab=98.52 E-value=7.3e-07 Score=86.84 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=68.2
Q ss_pred CCCccceeEEEeCCEEEEEcCcCCCc-ccceEEEEeCCCCceeec---CCCCCCcceeeEEEE-CCEEEEEeceecCCCC
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGFSRAL-AMRNVWRYDPVLNAWSEV---SSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGG 243 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 243 (474)
..|+.+++++++++++||+||.+... ..+.+++||..|++|... ...|.+|.+|+++++ +++|+|+++...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---- 97 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---- 97 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC----
Confidence 44789999999999999999987654 688999999999999874 578999999999999 589999997541
Q ss_pred CccCceEEEEeCCC
Q 011957 244 LTPLQSAEVFDPRT 257 (474)
Q Consensus 244 ~~~~~~~~~yd~~t 257 (474)
.-.++|.....|
T Consensus 98 --~~~~~w~l~~~t 109 (398)
T PLN02772 98 --PDDSIWFLEVDT 109 (398)
T ss_pred --CccceEEEEcCC
Confidence 235666665554
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.47 E-value=8e-05 Score=69.00 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=91.1
Q ss_pred cceEEEEeCCCCceeecCCCCCC-cceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEE-ccCCCcccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVG-RAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSE-ILSMPFSKAQV 273 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~r~~~ 273 (474)
...+++|+..+++|+.+...+.. ......+.++|.||.+.-.... .....+..||..+++|++ ++ +|......
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~----~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~ 143 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT----NPDYFIVSFDVSSERFKEFIP-LPCGNSDS 143 (230)
T ss_pred CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCC----CCcEEEEEEEcccceEeeeee-cCcccccc
Confidence 45789999999999998643321 1122267789999998754311 111379999999999995 53 34332210
Q ss_pred ccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEc-CCCCceEEcCCCCCC-CCCcccc-CcceEEEECC
Q 011957 274 LPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYD-PDVNSWVEMPVGMGE-GWPVRQA-GTKLSITVEG 350 (474)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd-~~t~~W~~~~~~~~~-~~p~~~~-~~~~~~~~~~ 350 (474)
.. ....+.++|+|.++........ +..++.+ -....|+++-. ... .++.... .....+..+|
T Consensus 144 ~~-----------~~~L~~~~G~L~~v~~~~~~~~---~~IWvl~d~~~~~W~k~~~-i~~~~~~~~~~~~~~~~~~~~g 208 (230)
T TIGR01640 144 VD-----------YLSLINYKGKLAVLKQKKDTNN---FDLWVLNDAGKQEWSKLFT-VPIPPLPDLVDDNFLSGFTDKG 208 (230)
T ss_pred cc-----------ceEEEEECCEEEEEEecCCCCc---EEEEEECCCCCCceeEEEE-EcCcchhhhhhheeEeEEeeCC
Confidence 00 0456778899988654322111 3336654 44567997533 110 1111111 1122567788
Q ss_pred EEEEEcCCCCCCCceEEEEECCCC
Q 011957 351 ELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 351 ~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
+|++.... .....+..||++++
T Consensus 209 ~I~~~~~~--~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 209 EIVLCCED--ENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEeCC--CCceEEEEEeccCC
Confidence 88887653 11224899999875
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.37 E-value=9.1e-07 Score=57.90 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCCccceeEEEeCCEEEEEcCcC--CCcccceEEEEeCCCC
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGFS--RALAMRNVWRYDPVLN 207 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~ 207 (474)
|.||..|+++.++++|||+||.+ .....+++|+||+.+.
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 67899999999999999999998 4677899999998763
No 49
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.37 E-value=0.00018 Score=70.09 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=34.3
Q ss_pred CCCCCcHHHHHHhhhccC-ccchhhHHHhhHHHHHhhcC
Q 011957 42 LIPSLPDEISLQILARIP-RIYYLNVKLVSRAWKAAITS 79 (474)
Q Consensus 42 ~~~~LPddl~~~il~rlp-~~~~~~~~~Vck~W~~li~s 79 (474)
.|..||+||++.|..||| ..++.+++.||+.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 588999999999999996 77899999999999997654
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.34 E-value=1.1e-06 Score=57.56 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.4
Q ss_pred CCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 215 MSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 215 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+|.+|.+|++++++++|||+||... ......+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 4889999999999999999999873 23456899999998763
No 51
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.26 E-value=9.5e-07 Score=57.52 Aligned_cols=39 Identities=38% Similarity=0.699 Sum_probs=36.2
Q ss_pred CcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhh
Q 011957 46 LPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFS 84 (474)
Q Consensus 46 LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~ 84 (474)
||+|++.+|+.+++..++.+++.|||+|+.++..+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998887654
No 52
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.23 E-value=2.9e-07 Score=62.37 Aligned_cols=44 Identities=32% Similarity=0.547 Sum_probs=36.8
Q ss_pred CCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhhh
Q 011957 42 LIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFSF 85 (474)
Q Consensus 42 ~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~~ 85 (474)
.|..||+|++.+|+.+++..++.+++.|||+|+.++.+..+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 35679999999999999999999999999999999998877654
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.14 E-value=0.00023 Score=65.51 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=92.9
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCC----CceEEcc-CCCcccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT----GLWSEIL-SMPFSKA 271 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~ 271 (474)
..-..||+.|++++.+.-....-+...+..-+|++.+.||... -...+..|++.+ ..|.+.+ .|..+|-
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~------G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND------GNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc------cccceEEEecCCCCCCCCceECcccccCCCc
Confidence 3456899999999987643222222222334899999999753 235677888865 6798876 4787777
Q ss_pred ccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC-----ceEEcCCCCCCCCCccccCcceEE
Q 011957 272 QVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN-----SWVEMPVGMGEGWPVRQAGTKLSI 346 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-----~W~~~~~~~~~~~p~~~~~~~~~~ 346 (474)
.. .....-||+++|+||....+ .|.+.+... .|..+.. .....+ .........
T Consensus 120 Yp--------------T~~~L~DG~vlIvGG~~~~t------~E~~P~~~~~~~~~~~~~l~~-~~~~~~-~nlYP~~~l 177 (243)
T PF07250_consen 120 YP--------------TATTLPDGRVLIVGGSNNPT------YEFWPPKGPGPGPVTLPFLSQ-TSDTLP-NNLYPFVHL 177 (243)
T ss_pred cc--------------cceECCCCCEEEEeCcCCCc------ccccCCccCCCCceeeecchh-hhccCc-cccCceEEE
Confidence 61 33445689999999977422 133333211 2222221 100011 122223356
Q ss_pred EECCEEEEEcCCCCCCCceEEEEECCCCce-EEeccCCCC
Q 011957 347 TVEGELYALDPSGALDSAKIKVYDYHDDTW-KVVVGDVPL 385 (474)
Q Consensus 347 ~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W-~~v~~~~p~ 385 (474)
.-+|+||+++. ..-..||++++++ +.+ +.+|.
T Consensus 178 lPdG~lFi~an------~~s~i~d~~~n~v~~~l-P~lPg 210 (243)
T PF07250_consen 178 LPDGNLFIFAN------RGSIIYDYKTNTVVRTL-PDLPG 210 (243)
T ss_pred cCCCCEEEEEc------CCcEEEeCCCCeEEeeC-CCCCC
Confidence 77899999986 3457899999987 455 34553
No 54
>PLN02772 guanylate kinase
Probab=98.14 E-value=1.6e-05 Score=77.63 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=62.8
Q ss_pred cccCcceEEEECCEEEEEcCCCCC--CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee-CCEEEEEecCCCCc
Q 011957 338 RQAGTKLSITVEGELYALDPSGAL--DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL-LGKLHVITNDANHN 414 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~--~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~ 414 (474)
++.+++ ++.+++++||+||.+.. ..+.+++||+.+++|..... .+..|.+|.+|+++++ +++|+|++++...+
T Consensus 24 ~~~~~t-av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V---~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 24 PKNRET-SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIV---LGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCcce-eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccc---cCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 344444 89999999999997543 35799999999999998532 2456678889999988 68999999977766
Q ss_pred eeEEEEeec
Q 011957 415 IAVLQADVK 423 (474)
Q Consensus 415 ~~~~~~d~~ 423 (474)
-.++-+++.
T Consensus 100 ~~~w~l~~~ 108 (398)
T PLN02772 100 DSIWFLEVD 108 (398)
T ss_pred cceEEEEcC
Confidence 565555554
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.96 E-value=0.0038 Score=61.32 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=84.8
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCC-ccCceEEEE--e--
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGL-TPLQSAEVF--D-- 254 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~-~~~~~~~~y--d-- 254 (474)
.+.+|+.++.. ....+||+.|..-..+|.|+.+.....++.++++||++.......... .....+|++ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899988653 448899999999998999888888888888899999998864321110 000144544 4
Q ss_pred ------CCCCceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEE-eccCCCCcceeccceEEEcCCCCceEE
Q 011957 255 ------PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFV-PQSLYFWPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 255 ------~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv-~gG~~~~~~~~~~gg~~yd~~t~~W~~ 326 (474)
...-.|+.+++.|......... ..+.+.+++ +..|+| ..+.. .|-+.||+++.+|++
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~--------~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSD--------YRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRK 213 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCccc--------ceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceee
Confidence 2334688887755444331000 002566666 678888 33311 255899999999999
Q ss_pred cCC
Q 011957 327 MPV 329 (474)
Q Consensus 327 ~~~ 329 (474)
+..
T Consensus 214 ~Gd 216 (342)
T PF07893_consen 214 HGD 216 (342)
T ss_pred ccc
Confidence 865
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.78 E-value=0.00061 Score=63.83 Aligned_cols=42 Identities=29% Similarity=0.572 Sum_probs=37.9
Q ss_pred CCCCc----HHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhh
Q 011957 43 IPSLP----DEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFS 84 (474)
Q Consensus 43 ~~~LP----ddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~ 84 (474)
+..|| |+++++||+.|...+|+.+.+|||+|+.++..+-+.+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 55789 9999999999999999999999999999998886643
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.42 E-value=0.07 Score=53.70 Aligned_cols=177 Identities=14% Similarity=0.088 Sum_probs=98.7
Q ss_pred EEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCC--CcceeeEEEECCEEEEEeceecCCCCCccCceEEEE
Q 011957 178 GAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSV--GRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 178 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
+..++.||+..+ ...++.+|+.+.+ |+.-...|. .+...+-++.++.+|+..+. ..+..+
T Consensus 157 ~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~----------g~v~a~ 220 (394)
T PRK11138 157 VVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN----------GRVSAV 220 (394)
T ss_pred EEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC----------CEEEEE
Confidence 345788887543 2468999998876 876433221 12223445567777775431 357788
Q ss_pred eCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc--eEEcCC
Q 011957 254 DPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS--WVEMPV 329 (474)
Q Consensus 254 d~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~ 329 (474)
|+++++ |+.--..+...... ..+ ......-++.++.+|+.+. + -...++|+.+++ |+.-..
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~---~~~----~~~~~sP~v~~~~vy~~~~-~-------g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEI---DRL----VDVDTTPVVVGGVVYALAY-N-------GNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred EccCChhhheeccccCCCccch---hcc----cccCCCcEEECCEEEEEEc-C-------CeEEEEECCCCCEEEeecCC
Confidence 888764 77432111110000 000 0000233567899998542 1 123788988775 876321
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEE
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVI 407 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 407 (474)
. + . . .++.+++||+... .+.++.+|+++. .|+.-. + ..+...+.+..+++||+.
T Consensus 286 ---~--~---~--~-~~~~~~~vy~~~~-----~g~l~ald~~tG~~~W~~~~--~------~~~~~~sp~v~~g~l~v~ 341 (394)
T PRK11138 286 ---S--V---N--D-FAVDGGRIYLVDQ-----NDRVYALDTRGGVELWSQSD--L------LHRLLTAPVLYNGYLVVG 341 (394)
T ss_pred ---C--c---c--C-cEEECCEEEEEcC-----CCeEEEEECCCCcEEEcccc--c------CCCcccCCEEECCEEEEE
Confidence 0 1 0 1 4678999999864 357999999876 486421 1 011122345678999875
Q ss_pred ec
Q 011957 408 TN 409 (474)
Q Consensus 408 GG 409 (474)
..
T Consensus 342 ~~ 343 (394)
T PRK11138 342 DS 343 (394)
T ss_pred eC
Confidence 43
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.16 E-value=0.18 Score=50.67 Aligned_cols=200 Identities=11% Similarity=0.078 Sum_probs=109.1
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeec-CCC----C---CCcceeeEEEECCEEEEEeceecCCCCCc
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEV-SSM----S---VGRAYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~-~~~----p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
+.+..+++||+... ...++.||..+.+ |+.- +.- . .++.....++.+++||+.+.
T Consensus 64 sPvv~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------- 128 (394)
T PRK11138 64 HPAVAYNKVYAADR------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------- 128 (394)
T ss_pred ccEEECCEEEEECC------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---------
Confidence 44567999999764 2478899988765 8753 220 0 11223345677899997543
Q ss_pred cCceEEEEeCCCC--ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 246 PLQSAEVFDPRTG--LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 246 ~~~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
...+.++|.+++ .|+.-.+ .+.. .+.++.++.+|+..+. -....+|+++++
T Consensus 129 -~g~l~ald~~tG~~~W~~~~~--~~~~----------------ssP~v~~~~v~v~~~~--------g~l~ald~~tG~ 181 (394)
T PRK11138 129 -KGQVYALNAEDGEVAWQTKVA--GEAL----------------SRPVVSDGLVLVHTSN--------GMLQALNESDGA 181 (394)
T ss_pred -CCEEEEEECCCCCCcccccCC--Ccee----------------cCCEEECCEEEEECCC--------CEEEEEEccCCC
Confidence 146899998876 4875322 1111 2335568888885431 113789998876
Q ss_pred --eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEEeccCCCCCCCCC---CCCCeE
Q 011957 324 --WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKVVVGDVPLPNFTD---SESPYL 396 (474)
Q Consensus 324 --W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~v~~~~p~~~~~~---~r~~~~ 396 (474)
|+.-.. .. .....+..+-++.++.+|+..+ .+.+..+|+++. .|+.-. ..|.+.... .....+
T Consensus 182 ~~W~~~~~-~~---~~~~~~~~sP~v~~~~v~~~~~-----~g~v~a~d~~~G~~~W~~~~-~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 182 VKWTVNLD-VP---SLTLRGESAPATAFGGAIVGGD-----NGRVSAVLMEQGQLIWQQRI-SQPTGATEIDRLVDVDTT 251 (394)
T ss_pred EeeeecCC-CC---cccccCCCCCEEECCEEEEEcC-----CCEEEEEEccCChhhheecc-ccCCCccchhcccccCCC
Confidence 887432 11 0000111113456777777654 357888998876 586521 111111000 001123
Q ss_pred EEeeCCEEEEEecCCCCceeEEEEeecCCCCCCCCC
Q 011957 397 LAGLLGKLHVITNDANHNIAVLQADVKNHFASMPSA 432 (474)
Q Consensus 397 ~~~~~~~l~v~GG~~~~~~~~~~~d~~~~~~~~w~~ 432 (474)
-+..++.+|+.+.. + .+..+|..+ ....|+.
T Consensus 252 P~v~~~~vy~~~~~--g--~l~ald~~t-G~~~W~~ 282 (394)
T PRK11138 252 PVVVGGVVYALAYN--G--NLVALDLRS-GQIVWKR 282 (394)
T ss_pred cEEECCEEEEEEcC--C--eEEEEECCC-CCEEEee
Confidence 34568888876542 1 355556542 2334654
No 59
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.04 E-value=0.064 Score=49.53 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=67.1
Q ss_pred EEE-EcCcCC-CcccceEEEEeCCCCc--------e---eecCCCCCCcceeeEEEE----CCEEEEEeceecCCCC---
Q 011957 184 LYV-LGGFSR-ALAMRNVWRYDPVLNA--------W---SEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRGPGG--- 243 (474)
Q Consensus 184 lyv-~GG~~~-~~~~~~v~~yd~~t~~--------W---~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~--- 243 (474)
-|+ -||.+. ++....+++....+.. . ..+.++|.+|++|++.++ +....+|||...-..+
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 444 467653 4556677776554432 1 124689999999998777 2346778886532111
Q ss_pred ---Cc----cCceEEEEeCCCCceE--EccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCC
Q 011957 244 ---LT----PLQSAEVFDPRTGLWS--EILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLY 304 (474)
Q Consensus 244 ---~~----~~~~~~~yd~~t~~W~--~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~ 304 (474)
++ ....|+..|++-+..+ .++.+....+. |.+..-++.+|++||..
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF---------------Hvslar~D~VYilGGHs 174 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF---------------HVSLARNDCVYILGGHS 174 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEE---------------EEEEecCceEEEEccEE
Confidence 11 2356778888888776 34555555554 66677899999988854
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.01 E-value=0.28 Score=45.16 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=89.3
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--ee-ecCCCCCC--cceeeEEEECCEEEEEeceecCCCCCccCceEE
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WS-EVSSMSVG--RAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~-~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
....++.||+... .+.++.+|..+.+ |+ .....+.. +......+.++.+|+... ...+.
T Consensus 72 ~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~l~ 135 (238)
T PF13360_consen 72 PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----------SGKLV 135 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----------CSEEE
T ss_pred eeecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----------cCcEE
Confidence 3667889988762 2379999988876 88 44332222 233445555778877664 25789
Q ss_pred EEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc--eEEc
Q 011957 252 VFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS--WVEM 327 (474)
Q Consensus 252 ~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~--W~~~ 327 (474)
.+|+++++ |+.-...+....... .........+..++.+|+..+... ...+|.++++ |+..
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~g~--------~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPIS-------SFSDINGSPVISDGRVYVSSGDGR--------VVAVDLATGEKLWSKP 200 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EE-------EETTEEEEEECCTTEEEEECCTSS--------EEEEETTTTEEEEEEC
T ss_pred EEecCCCcEEEEeecCCCCCCccee-------eecccccceEEECCEEEEEcCCCe--------EEEEECCCCCEEEEec
Confidence 99998775 775443332111000 000000233445689999765221 2455999987 8554
Q ss_pred CCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc--eE
Q 011957 328 PVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT--WK 377 (474)
Q Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~ 377 (474)
.. - .. ......++.||+... .+.+..+|+++++ |+
T Consensus 201 ~~-~--------~~-~~~~~~~~~l~~~~~-----~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 201 IS-G--------IY-SLPSVDGGTLYVTSS-----DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp SS----------EC-ECEECCCTEEEEEET-----TTEEEEEETTTTEEEEE
T ss_pred CC-C--------cc-CCceeeCCEEEEEeC-----CCEEEEEECCCCCEEeE
Confidence 21 1 11 114667788888862 3689999999874 64
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.95 E-value=0.024 Score=55.65 Aligned_cols=122 Identities=12% Similarity=0.090 Sum_probs=76.4
Q ss_pred CccEEEEEEeecCCceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCC
Q 011957 92 TEEWLYILTKVEDDKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMG 171 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~p 171 (474)
.+..|+.+... .....||+.+..-..+|.++.+
T Consensus 75 ~gskIv~~d~~----~~t~vyDt~t~av~~~P~l~~p------------------------------------------- 107 (342)
T PF07893_consen 75 HGSKIVAVDQS----GRTLVYDTDTRAVATGPRLHSP------------------------------------------- 107 (342)
T ss_pred cCCeEEEEcCC----CCeEEEECCCCeEeccCCCCCC-------------------------------------------
Confidence 35566666443 2478999999987777776654
Q ss_pred ccceeEEEeCCEEEEEcCcCCCcc-------cceEEEEeC--------CCCceeecCCCCCCcce-------eeEEEE-C
Q 011957 172 FCGCSIGAVDGCLYVLGGFSRALA-------MRNVWRYDP--------VLNAWSEVSSMSVGRAY-------SKIGIL-N 228 (474)
Q Consensus 172 r~~~~~~~~~~~lyv~GG~~~~~~-------~~~v~~yd~--------~t~~W~~~~~~p~~r~~-------~~~~~~-~ 228 (474)
...-.++.++++||++........ .-++..|++ ....|+.+|+.|..+.. .+-+++ +
T Consensus 108 k~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g 187 (342)
T PF07893_consen 108 KRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDG 187 (342)
T ss_pred CcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecC
Confidence 222355667899999987532211 223444452 23368899887755432 233455 6
Q ss_pred CEEEE-EeceecCCCCCccCceEEEEeCCCCceEEccCCCcc
Q 011957 229 NKLYA-VGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFS 269 (474)
Q Consensus 229 ~~lyv-~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 269 (474)
..|+| +-|.. ...+.||.++.+|+.+.+-.-|
T Consensus 188 ~~I~vS~~~~~---------~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 188 RTIFVSVNGRR---------WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred CeEEEEecCCc---------eEEEEEEcCCcceeeccceecC
Confidence 78888 33321 3589999999999999764433
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00081 Score=62.41 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhh
Q 011957 42 LIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELF 83 (474)
Q Consensus 42 ~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~ 83 (474)
.|-+|||||++.|++.||.+.+.++..|||||+.+.....+.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 478999999999999999999999999999999987766553
No 63
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=96.57 E-value=0.19 Score=45.00 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=77.2
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCce--eec----CCCCCCcceeeEEEEC-CEEEEEeceecCCCCCccCce
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAW--SEV----SSMSVGRAYSKIGILN-NKLYAVGGVTRGPGGLTPLQS 249 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~ 249 (474)
+....+++|+|-| +.+|+++...... +.+ +.+|. ....+..... +++|+|-| +.
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-----------~~ 72 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-----------DK 72 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-----------CE
Confidence 4445699999976 4678887652211 111 22222 1222222223 89999977 35
Q ss_pred EEEEeCCCCceEEccCCCccccc-cccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEc
Q 011957 250 AEVFDPRTGLWSEILSMPFSKAQ-VLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEM 327 (474)
Q Consensus 250 ~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~ 327 (474)
.++||..+..+. -|..... ..+. ....+-++.... ++++|+|.|.. -++||..+++-..-
T Consensus 73 yw~~~~~~~~~~----~Pk~i~~~~~~~-----~~~~iDAA~~~~~~~~~yfFkg~~---------y~ry~~~~~~v~~~ 134 (194)
T cd00094 73 YWVYTGKNLEPG----YPKPISDLGFPP-----TVKQIDAALRWPDNGKTYFFKGDK---------YWRYDEKTQKMDPG 134 (194)
T ss_pred EEEEcCcccccC----CCcchhhcCCCC-----CCCCccEEEEEcCCCEEEEEeCCE---------EEEEeCCCccccCC
Confidence 777776542221 1111100 0000 000000333333 68999987732 27888766544211
Q ss_pred -CCCCCCCCCccccCcceEEEEC-CEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 328 -PVGMGEGWPVRQAGTKLSITVE-GELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 328 -~~~~~~~~p~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
+..+...|+.......++...+ +++|++-| ...++||..+++
T Consensus 135 yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 135 YPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred CCcchhhcCCCcCCCcceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence 1112222222211122234344 89999976 589999998776
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.45 E-value=0.78 Score=45.73 Aligned_cols=168 Identities=20% Similarity=0.167 Sum_probs=92.5
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCc--------ceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGR--------AYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
.+..++.+|+ |.. ...+..+|+.+.+ |+.--..+... .....+..++.+|+....
T Consensus 186 p~~~~~~v~~-~~~-----~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~--------- 250 (377)
T TIGR03300 186 PVIADGGVLV-GFA-----GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ--------- 250 (377)
T ss_pred CEEECCEEEE-ECC-----CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------
Confidence 3445666654 322 2468889988764 76432212111 122344568888886531
Q ss_pred CceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc-
Q 011957 247 LQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS- 323 (474)
Q Consensus 247 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~- 323 (474)
..+.+||+++++ |+.-. + .. ...+..+++||+... + -...++|..+++
T Consensus 251 -g~l~a~d~~tG~~~W~~~~--~---~~---------------~~p~~~~~~vyv~~~-~-------G~l~~~d~~tG~~ 301 (377)
T TIGR03300 251 -GRVAALDLRSGRVLWKRDA--S---SY---------------QGPAVDDNRLYVTDA-D-------GVVVALDRRSGSE 301 (377)
T ss_pred -CEEEEEECCCCcEEEeecc--C---Cc---------------cCceEeCCEEEEECC-C-------CeEEEEECCCCcE
Confidence 468899998764 76431 1 11 233567889998542 1 123678887764
Q ss_pred -eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc--eEEeccCCCCCCCCCCCCCeEEEee
Q 011957 324 -WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT--WKVVVGDVPLPNFTDSESPYLLAGL 400 (474)
Q Consensus 324 -W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~~ 400 (474)
|+.-.. . .... +..+..++.||+... .+.++.+|+++.+ |+. + .+ ........+..
T Consensus 302 ~W~~~~~--~----~~~~--ssp~i~g~~l~~~~~-----~G~l~~~d~~tG~~~~~~-~----~~---~~~~~~sp~~~ 360 (377)
T TIGR03300 302 LWKNDEL--K----YRQL--TAPAVVGGYLVVGDF-----EGYLHWLSREDGSFVARL-K----TD---GSGIASPPVVV 360 (377)
T ss_pred EEccccc--c----CCcc--ccCEEECCEEEEEeC-----CCEEEEEECCCCCEEEEE-E----cC---CCccccCCEEE
Confidence 865321 1 1111 113557888887642 3578999987663 533 1 11 11122345678
Q ss_pred CCEEEEEec
Q 011957 401 LGKLHVITN 409 (474)
Q Consensus 401 ~~~l~v~GG 409 (474)
+++||+.+.
T Consensus 361 ~~~l~v~~~ 369 (377)
T TIGR03300 361 GDGLLVQTR 369 (377)
T ss_pred CCEEEEEeC
Confidence 888887554
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.43 E-value=1.2 Score=44.51 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=83.9
Q ss_pred EEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCC--CcceeeEEEECCEEEEEeceecCCCCCccCceEEEE
Q 011957 178 GAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSV--GRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 178 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
+..++.+|+..+ ...++.+|+.+.+ |+.-...+. .+...+.+..++.+|+ |.. ...+..+
T Consensus 142 ~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~---------~g~v~al 205 (377)
T TIGR03300 142 LVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA---------GGKLVAL 205 (377)
T ss_pred EEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC---------CCEEEEE
Confidence 345778877543 2568999998765 875332221 1223344556776654 332 1368889
Q ss_pred eCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc--eEEcCC
Q 011957 254 DPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS--WVEMPV 329 (474)
Q Consensus 254 d~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~ 329 (474)
|+++++ |+.--..+....... .. ..+....++.++.+|+.+. + -...+||+++++ |+.-..
T Consensus 206 d~~tG~~~W~~~~~~~~g~~~~~---~~----~~~~~~p~~~~~~vy~~~~-~-------g~l~a~d~~tG~~~W~~~~~ 270 (377)
T TIGR03300 206 DLQTGQPLWEQRVALPKGRTELE---RL----VDVDGDPVVDGGQVYAVSY-Q-------GRVAALDLRSGRVLWKRDAS 270 (377)
T ss_pred EccCCCEeeeeccccCCCCCchh---hh----hccCCccEEECCEEEEEEc-C-------CEEEEEECCCCcEEEeeccC
Confidence 987764 764322121110000 00 0000223456888888542 1 123788887764 765311
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEE
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKV 378 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~ 378 (474)
.. ...++.+++||+... .+.++.+|..+. .|+.
T Consensus 271 --------~~---~~p~~~~~~vyv~~~-----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 271 --------SY---QGPAVDDNRLYVTDA-----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred --------Cc---cCceEeCCEEEEECC-----CCeEEEEECCCCcEEEcc
Confidence 11 114567899998853 357999999876 4765
No 66
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.18 E-value=1 Score=41.35 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=104.4
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEe
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
.+..++.+|+..+ ...++.+|..+.+ |+.-. +.+ ........++.||+..+. ..+..+|
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~v~v~~~~----------~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGRVYVGTSD----------GSLYALD 92 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSC-GGSGEEEETTEEEEEETT----------SEEEEEE
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--ccc-ccceeeecccccccccce----------eeeEecc
Confidence 3447889999843 4689999998876 66543 222 122247778999988731 3789999
Q ss_pred CCCCc--eE-EccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc--eEEcCC
Q 011957 255 PRTGL--WS-EILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS--WVEMPV 329 (474)
Q Consensus 255 ~~t~~--W~-~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~ 329 (474)
..+++ |+ .....+...... ....++.++.+|+... . -...++|+++++ |+.-..
T Consensus 93 ~~tG~~~W~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~-------g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPPAGVRS-------------SSSPAVDGDRLYVGTS-S-------GKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp TTTSCEEEEEEE-SSCTCSTB---------------SEEEEETTEEEEEET-C-------SEEEEEETTTTEEEEEEESS
T ss_pred cCCcceeeeecccccccccccc-------------ccCceEecCEEEEEec-c-------CcEEEEecCCCcEEEEeecC
Confidence 87765 88 343322211110 0334455778877542 1 234789998775 776433
Q ss_pred CCCCC-CCccc--cCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc--eEEeccCCCCCCCCCCCCCeEEEeeCCEE
Q 011957 330 GMGEG-WPVRQ--AGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT--WKVVVGDVPLPNFTDSESPYLLAGLLGKL 404 (474)
Q Consensus 330 ~~~~~-~p~~~--~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~~~~~l 404 (474)
.... .+... ...+..+..++.+|+..+.. .+..+|.++++ |+.. . . . ........++.|
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----~~~~~d~~tg~~~w~~~-~---~-~-----~~~~~~~~~~~l 215 (238)
T PF13360_consen 152 -EPRGSSPISSFSDINGSPVISDGRVYVSSGDG-----RVVAVDLATGEKLWSKP-I---S-G-----IYSLPSVDGGTL 215 (238)
T ss_dssp -TT-SS--EEEETTEEEEEECCTTEEEEECCTS-----SEEEEETTTTEEEEEEC-S---S-------ECECEECCCTEE
T ss_pred -CCCCCcceeeecccccceEEECCEEEEEcCCC-----eEEEEECCCCCEEEEec-C---C-C-----ccCCceeeCCEE
Confidence 2110 00000 00122455578899987643 35666999986 8432 1 0 0 111245667777
Q ss_pred EEEecCCCCceeEEEEeec
Q 011957 405 HVITNDANHNIAVLQADVK 423 (474)
Q Consensus 405 ~v~GG~~~~~~~~~~~d~~ 423 (474)
|+.. . .+ .+..+|+.
T Consensus 216 ~~~~-~-~~--~l~~~d~~ 230 (238)
T PF13360_consen 216 YVTS-S-DG--RLYALDLK 230 (238)
T ss_dssp EEEE-T-TT--EEEEEETT
T ss_pred EEEe-C-CC--EEEEEECC
Confidence 7766 2 22 45556644
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.92 E-value=0.12 Score=49.05 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=68.9
Q ss_pred cCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 246 PLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
....+-.||+.+.+|..+..- ..+. +..+... +++||+.|.+.-... .......||..+.+|
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G~-------------V~~l~~~~~~~Llv~G~ft~~~~-~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISGT-------------VTDLQWASNNQLLVGGNFTLNGT-NSSNLATYDFKNQTW 76 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceEE-------------EEEEEEecCCEEEEEEeeEECCC-CceeEEEEecCCCee
Confidence 467888999999999987643 2221 1344434 788888776543321 112237999999999
Q ss_pred EEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEecc
Q 011957 325 VEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVG 381 (474)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 381 (474)
+.++......+|.+.........-.+.+++.|.. ......+..| +..+|+.+..
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEecee-cCCCceEEEE--cCCceEeccc
Confidence 9987633233343322211011123456766664 3344567777 4668999864
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.78 E-value=0.19 Score=47.65 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=52.5
Q ss_pred EEEEcCcCCCc--ccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 184 LYVLGGFSRAL--AMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 184 lyv~GG~~~~~--~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
|||-|-++... ....+..||+.+.+|..+..--.+-. ..+... +++||+.|-..... .....+-.||.++.+|
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~---~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNG---TNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECC---CCceeEEEEecCCCee
Confidence 35545454333 47789999999999999865432222 233333 78888888665332 1346788999999999
Q ss_pred EEccC
Q 011957 261 SEILS 265 (474)
Q Consensus 261 ~~~~~ 265 (474)
+.++.
T Consensus 77 ~~~~~ 81 (281)
T PF12768_consen 77 SSLGG 81 (281)
T ss_pred eecCC
Confidence 98865
No 69
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.77 E-value=0.0064 Score=56.83 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHhhhccC-----ccchhhHHHhhHHHHHhhcCchhhhhh
Q 011957 43 IPSLPDEISLQILARIP-----RIYYLNVKLVSRAWKAAITSSELFSFR 86 (474)
Q Consensus 43 ~~~LPddl~~~il~rlp-----~~~~~~~~~Vck~W~~li~s~~~~~~r 86 (474)
|.-|||||+++||.++= ..++.++++|||.|+-....+++++.-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 45799999999999765 489999999999999999999987554
No 70
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.75 E-value=1.8 Score=40.68 Aligned_cols=165 Identities=20% Similarity=0.198 Sum_probs=90.6
Q ss_pred eeEEEeCCEEEEEcCcCC-----------------CcccceEEEEeCCCCc----eeecCCCCCCcceeeE-EE---ECC
Q 011957 175 CSIGAVDGCLYVLGGFSR-----------------ALAMRNVWRYDPVLNA----WSEVSSMSVGRAYSKI-GI---LNN 229 (474)
Q Consensus 175 ~~~~~~~~~lyv~GG~~~-----------------~~~~~~v~~yd~~t~~----W~~~~~~p~~r~~~~~-~~---~~~ 229 (474)
-++..+++.|| |||+-. .+..+.+..||..+++ |++--.-+..-++-.. .. +++
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D 118 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYED 118 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcC
Confidence 35556788887 577521 0235689999999887 6553322222222111 12 368
Q ss_pred EEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcce
Q 011957 230 KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFF 309 (474)
Q Consensus 230 ~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~ 309 (474)
+|++.-+- + ..---++..|..++.=+.+..-|.+... .+.+..+|-+ .+.+...
T Consensus 119 ~LLlAR~D-----G-h~nLGvy~ldr~~g~~~~L~~~ps~KG~------------------~~~D~a~F~i--~~~~~g~ 172 (339)
T PF09910_consen 119 RLLLARAD-----G-HANLGVYSLDRRTGKAEKLSSNPSLKGT------------------LVHDYACFGI--NNFHKGV 172 (339)
T ss_pred EEEEEecC-----C-cceeeeEEEcccCCceeeccCCCCcCce------------------EeeeeEEEec--cccccCC
Confidence 88887652 2 1234577788888888888776655332 2222222222 1111111
Q ss_pred eccceEEEcCCCCce--EEcCCCCC-CCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 310 VDVGGEVYDPDVNSW--VEMPVGMG-EGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 310 ~~~gg~~yd~~t~~W--~~~~~~~~-~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
-+.++||+.+++| +..+.+.. ++-+..+...++++...+++|.|=+ +.+.+.||..+
T Consensus 173 --~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r------GGi~vgnP~~~ 232 (339)
T PF09910_consen 173 --SGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR------GGIFVGNPYNG 232 (339)
T ss_pred --ceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEe------ccEEEeCCCCC
Confidence 2348999999999 44432111 1112222333447888888887721 25778888743
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.70 E-value=0.84 Score=42.43 Aligned_cols=160 Identities=21% Similarity=0.259 Sum_probs=82.2
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC-----CCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEe
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS-----VGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p-----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
-++.+|+... ....++|+.+++++.+...+ ..+..-.++--+|.||+---...... ......+++++
T Consensus 50 ~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~-~~~~g~v~~~~ 121 (246)
T PF08450_consen 50 PDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS-GIDPGSVYRID 121 (246)
T ss_dssp TTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT-CGGSEEEEEEE
T ss_pred cCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc-cccccceEEEC
Confidence 3788988864 34566799999998876553 22223333333688888543211110 01115799999
Q ss_pred CCCCceEEcc-CCCccccccccchhhccccccceeeEEE-eCC-EEEEeccCCCCcceeccceEEEcCC--CCceEEcCC
Q 011957 255 PRTGLWSEIL-SMPFSKAQVLPTAFLADLLKPIATGMSS-YRG-RLFVPQSLYFWPFFVDVGGEVYDPD--VNSWVEMPV 329 (474)
Q Consensus 255 ~~t~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~gG~~~~~~~~~~gg~~yd~~--t~~W~~~~~ 329 (474)
+. .+.+.+. .+..| .+++. -++ .||+.--.. ...++||+. +..+.....
T Consensus 122 ~~-~~~~~~~~~~~~p------------------NGi~~s~dg~~lyv~ds~~-------~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 122 PD-GKVTVVADGLGFP------------------NGIAFSPDGKTLYVADSFN-------GRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp TT-SEEEEEEEEESSE------------------EEEEEETTSSEEEEEETTT-------TEEEEEEEETTTCCEEEEEE
T ss_pred CC-CeEEEEecCcccc------------------cceEECCcchheeeccccc-------ceeEEEeccccccceeeeee
Confidence 98 6655543 22222 33343 234 577743221 123677765 333332111
Q ss_pred --CCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 330 --GMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 330 --~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
..... ....- +.++-.+|.||+..- ..+.|++||++...-.++.
T Consensus 176 ~~~~~~~-~g~pD--G~~vD~~G~l~va~~----~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 176 FIDFPGG-PGYPD--GLAVDSDGNLWVADW----GGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEE-SSS-SCEEE--EEEEBTTS-EEEEEE----TTTEEEEEETTSCEEEEEE
T ss_pred EEEcCCC-CcCCC--cceEcCCCCEEEEEc----CCCEEEEECCCccEEEEEc
Confidence 01110 10111 224455799999832 1368999999966666664
No 72
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.20 E-value=1.3 Score=43.14 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=87.6
Q ss_pred CEEEEEeceecCCCCCccC-ceEEEEeCCCC-----ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEecc
Q 011957 229 NKLYAVGGVTRGPGGLTPL-QSAEVFDPRTG-----LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQS 302 (474)
Q Consensus 229 ~~lyv~GG~~~~~~~~~~~-~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG 302 (474)
...+++|............ ..+.+|+.... +.+.+.....+-.- .+++.++++|.+.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V---------------~ai~~~~~~lv~~~g 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPV---------------TAICSFNGRLVVAVG 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-E---------------EEEEEETTEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcc---------------eEhhhhCCEEEEeec
Confidence 3566666543222222223 67889999885 55655443322111 667778999766544
Q ss_pred CCCCcceeccceEEEcCCCCc-eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEecc
Q 011957 303 LYFWPFFVDVGGEVYDPDVNS-WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVG 381 (474)
Q Consensus 303 ~~~~~~~~~~gg~~yd~~t~~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~ 381 (474)
....+|+...++ +..... .. .......+.+.++.|++-.-.. .-.+..|+.+.++-..+..
T Consensus 107 ---------~~l~v~~l~~~~~l~~~~~-~~-----~~~~i~sl~~~~~~I~vgD~~~---sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 107 ---------NKLYVYDLDNSKTLLKKAF-YD-----SPFYITSLSVFKNYILVGDAMK---SVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp ---------TEEEEEEEETTSSEEEEEE-E------BSSSEEEEEEETTEEEEEESSS---SEEEEEEETTTE-EEEEEE
T ss_pred ---------CEEEEEEccCcccchhhhe-ec-----ceEEEEEEeccccEEEEEEccc---CEEEEEEEccCCEEEEEEe
Confidence 223678887777 777665 21 1112333677888777654322 2356677887666777752
Q ss_pred CCCCCCCCCCCCCeEEEee-CCEEEEEecCCCCceeEEEEee
Q 011957 382 DVPLPNFTDSESPYLLAGL-LGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 382 ~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
-..++...++..+ ++. .++++...+++.+..++-
T Consensus 169 ------d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 169 ------DYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ------ESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred ------cCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 1223333455556 666 777887888888888763
No 73
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.93 E-value=3.2 Score=38.71 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=55.3
Q ss_pred CCCCccceeEEEe--CCE--EEEEcCcCC--------------CcccceEEEEeCCCCcee--ecCCCCCCcceeeEEEE
Q 011957 168 DRMGFCGCSIGAV--DGC--LYVLGGFSR--------------ALAMRNVWRYDPVLNAWS--EVSSMSVGRAYSKIGIL 227 (474)
Q Consensus 168 ~p~pr~~~~~~~~--~~~--lyv~GG~~~--------------~~~~~~v~~yd~~t~~W~--~~~~~p~~r~~~~~~~~ 227 (474)
.|-+|++|++.++ .|+ ..+|||..- -.....|+..|+.-.-.+ .+|.+..+.+.|.+.+-
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar 163 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLAR 163 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEec
Confidence 4567999998765 333 778899631 022457888888877654 47888889999999999
Q ss_pred CCEEEEEeceecCC
Q 011957 228 NNKLYAVGGVTRGP 241 (474)
Q Consensus 228 ~~~lyv~GG~~~~~ 241 (474)
++.+|++||.....
T Consensus 164 ~D~VYilGGHsl~s 177 (337)
T PF03089_consen 164 NDCVYILGGHSLES 177 (337)
T ss_pred CceEEEEccEEccC
Confidence 99999999986443
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.77 E-value=3.7 Score=38.66 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=35.9
Q ss_pred EEEEEcCcCCCcccceEEEEeCCCCceeec-CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 183 CLYVLGGFSRALAMRNVWRYDPVLNAWSEV-SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 183 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
.+|+.++.+ +.+.+||+.+++-... .....++ .++.. +..+|+.++. ...+.+||..+.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~---------~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD---------SDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC---------CCeEEEEECCCCc
Confidence 466666543 4788889887764322 2111122 22222 3457777653 2578899998876
Q ss_pred eEE
Q 011957 260 WSE 262 (474)
Q Consensus 260 W~~ 262 (474)
...
T Consensus 65 ~~~ 67 (300)
T TIGR03866 65 VIG 67 (300)
T ss_pred EEE
Confidence 643
No 75
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.75 E-value=3.1 Score=38.87 Aligned_cols=190 Identities=22% Similarity=0.238 Sum_probs=104.9
Q ss_pred eEEE-eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEe
Q 011957 176 SIGA-VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 176 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
.+.. .+|.||.--|..+ .+.+.+||+.|++=....++|..-.+=+++.++++||.+-=. ...+.+||
T Consensus 49 GL~~~~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk---------~~~~f~yd 116 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK---------EGTGFVYD 116 (264)
T ss_dssp EEEEEETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS---------SSEEEEEE
T ss_pred cEEecCCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec---------CCeEEEEc
Confidence 4444 6789998877654 478889999999877767777767778899999999998432 36789999
Q ss_pred CCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCC
Q 011957 255 PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGE 333 (474)
Q Consensus 255 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~ 333 (474)
+.+ .+.+...+.+..+ -+++..+..+++.-|.+. .+..||++-+=.. +.. ...
T Consensus 117 ~~t--l~~~~~~~y~~EG---------------WGLt~dg~~Li~SDGS~~--------L~~~dP~~f~~~~~i~V-~~~ 170 (264)
T PF05096_consen 117 PNT--LKKIGTFPYPGEG---------------WGLTSDGKRLIMSDGSSR--------LYFLDPETFKEVRTIQV-TDN 170 (264)
T ss_dssp TTT--TEEEEEEE-SSS-----------------EEEECSSCEEEE-SSSE--------EEEE-TTT-SEEEEEE--EET
T ss_pred ccc--ceEEEEEecCCcc---------------eEEEcCCCEEEEECCccc--------eEEECCcccceEEEEEE-EEC
Confidence 975 5666555555555 677777777888555332 2667776532211 111 000
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc---eEEeccCCCCCCC-----CCCCCCeEEEe--eCCE
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT---WKVVVGDVPLPNF-----TDSESPYLLAG--LLGK 403 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~~~-----~~~r~~~~~~~--~~~~ 403 (474)
+.|.... --+-.++|.||.= -...+.|.+-||++++ |-.+.+..+.... +..-..-+++. -.++
T Consensus 171 g~pv~~L--NELE~i~G~IyAN----VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 171 GRPVSNL--NELEYINGKIYAN----VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp TEE---E--EEEEEETTEEEEE----ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred CEECCCc--EeEEEEcCEEEEE----eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 0011110 0133445555542 2235789999999986 4444332221111 11112234443 4678
Q ss_pred EEEEec
Q 011957 404 LHVITN 409 (474)
Q Consensus 404 l~v~GG 409 (474)
+||.|-
T Consensus 245 l~vTGK 250 (264)
T PF05096_consen 245 LFVTGK 250 (264)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 888876
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.59 E-value=6.5 Score=41.15 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=39.3
Q ss_pred CCCCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhh
Q 011957 40 PRLIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFS 84 (474)
Q Consensus 40 ~~~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~ 84 (474)
.-.+..||-|+...||..|+.+.+..++.||+.|+.++.......
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 346788999999999999999999999999999999987765543
No 77
>smart00284 OLF Olfactomedin-like domains.
Probab=93.50 E-value=6.1 Score=36.80 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=101.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeC----CCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDP----VLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~----~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++++|++.+... ..+.++.|.- ...++.+.=.+|.+-.+.+.++++|.+|.--.. ...+.+||..
T Consensus 34 ~~~~wv~~~~~~--~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~---------s~~iiKydL~ 102 (255)
T smart00284 34 KSLYWYMPLNTR--VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN---------SHDICRFDLT 102 (255)
T ss_pred CceEEEEccccC--CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC---------CccEEEEECC
Confidence 578999876531 1344555532 233343333567777788889999999985432 3679999999
Q ss_pred CCceEEccCCCcccccc-ccchhhccccccceeeEEEeCCEEEEeccCC-CCcceeccceEEEcCCCC----ceEEcCCC
Q 011957 257 TGLWSEILSMPFSKAQV-LPTAFLADLLKPIATGMSSYRGRLFVPQSLY-FWPFFVDVGGEVYDPDVN----SWVEMPVG 330 (474)
Q Consensus 257 t~~W~~~~~~p~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~-~~~~~~~~gg~~yd~~t~----~W~~~~~~ 330 (474)
+++-.....+|.+.... .+-..-+. . -.-.++-.+-|+|+=... .... +-.-..|+.+- +|..--
T Consensus 103 t~~v~~~~~Lp~a~y~~~~~Y~~~~~--s--diDlAvDE~GLWvIYat~~~~g~---ivvSkLnp~tL~ve~tW~T~~-- 173 (255)
T smart00284 103 TETYQKEPLLNGAGYNNRFPYAWGGF--S--DIDLAVDENGLWVIYATEQNAGK---IVISKLNPATLTIENTWITTY-- 173 (255)
T ss_pred CCcEEEEEecCccccccccccccCCC--c--cEEEEEcCCceEEEEeccCCCCC---EEEEeeCcccceEEEEEEcCC--
Confidence 99876555555332110 00000000 0 022344444455441110 0000 11245666543 566521
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee---CCEEEEE
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL---LGKLHVI 407 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~---~~~l~v~ 407 (474)
+...++. +.++=|.||++-........-.++||..+++=.. ..+|.+ .....+++.-+ +.+||+.
T Consensus 174 -----~k~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~--~~i~f~---n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 174 -----NKRSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGH--LDIPFE---NMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred -----Ccccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccce--eeeeec---cccccceeceeCCCCCeEEEE
Confidence 3333332 5666688999964332333457899999875322 223332 22223444443 5778875
Q ss_pred e
Q 011957 408 T 408 (474)
Q Consensus 408 G 408 (474)
-
T Consensus 242 d 242 (255)
T smart00284 242 N 242 (255)
T ss_pred e
Confidence 3
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.10 E-value=7.8 Score=36.42 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=35.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+..+|+.++. .+.+.+||+.+.+... ++....+ ..++.. ++.+|+.++.+ ..+.+||+.+
T Consensus 42 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~---------~~l~~~d~~~ 104 (300)
T TIGR03866 42 GKLLYVCASD-----SDTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDD---------NLVTVIDIET 104 (300)
T ss_pred CCEEEEEECC-----CCeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCC---------CeEEEEECCC
Confidence 3457777653 3568899998877543 2221112 122222 34577665421 4788999987
Q ss_pred Cc
Q 011957 258 GL 259 (474)
Q Consensus 258 ~~ 259 (474)
.+
T Consensus 105 ~~ 106 (300)
T TIGR03866 105 RK 106 (300)
T ss_pred Ce
Confidence 54
No 79
>PRK13684 Ycf48-like protein; Provisional
Probab=93.07 E-value=9.5 Score=37.35 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=96.0
Q ss_pred eeeeeeccccccccccCCCCccceeEEEe-CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCE
Q 011957 152 KIADLIRGWLGKKDALDRMGFCGCSIGAV-DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNK 230 (474)
Q Consensus 152 ~~~~~~~~w~~~~~~~~p~pr~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ 230 (474)
++.|.=+.|...... ...|.....+..+ ++.+|+.|. ...+++=+=.-.+|+.+...... ..+.+....+.
T Consensus 113 ~S~DgG~tW~~~~~~-~~~~~~~~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g 184 (334)
T PRK13684 113 HTTDGGKNWTRIPLS-EKLPGSPYLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDG 184 (334)
T ss_pred EECCCCCCCeEccCC-cCCCCCceEEEEECCCcceeeec------cceEEEECCCCCCceeCcCCCcc-eEEEEEECCCC
Confidence 334444577655321 1122222333333 344666553 23455544456789987643322 33444444444
Q ss_pred EEEEeceecCCCCCccCceEEE-EeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcc
Q 011957 231 LYAVGGVTRGPGGLTPLQSAEV-FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPF 308 (474)
Q Consensus 231 lyv~GG~~~~~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~ 308 (474)
.|++.|.. + .++. .|....+|+.+.. +..+.- .+++. -++.++++|.
T Consensus 185 ~~v~~g~~----G-----~i~~s~~~gg~tW~~~~~-~~~~~l---------------~~i~~~~~g~~~~vg~------ 233 (334)
T PRK13684 185 KYVAVSSR----G-----NFYSTWEPGQTAWTPHQR-NSSRRL---------------QSMGFQPDGNLWMLAR------ 233 (334)
T ss_pred eEEEEeCC----c-----eEEEEcCCCCCeEEEeeC-CCcccc---------------eeeeEcCCCCEEEEec------
Confidence 55554432 1 2222 2445567998754 222221 33333 4678888764
Q ss_pred eeccceEEEc-C-CCCceEEcCCCCCCCCCccccCcceE-EEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCC
Q 011957 309 FVDVGGEVYD-P-DVNSWVEMPVGMGEGWPVRQAGTKLS-ITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPL 385 (474)
Q Consensus 309 ~~~~gg~~yd-~-~t~~W~~~~~~~~~~~p~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~ 385 (474)
.|...+. . .-.+|+.+..+.. ....+...+ ..-++.++++|.. ..++.-.....+|+.+....
T Consensus 234 ---~G~~~~~s~d~G~sW~~~~~~~~----~~~~~l~~v~~~~~~~~~~~G~~-----G~v~~S~d~G~tW~~~~~~~-- 299 (334)
T PRK13684 234 ---GGQIRFNDPDDLESWSKPIIPEI----TNGYGYLDLAYRTPGEIWAGGGN-----GTLLVSKDGGKTWEKDPVGE-- 299 (334)
T ss_pred ---CCEEEEccCCCCCccccccCCcc----ccccceeeEEEcCCCCEEEEcCC-----CeEEEeCCCCCCCeECCcCC--
Confidence 2223442 2 2348997654211 011111112 2336788888753 34444444457899874100
Q ss_pred CCCCCCCCCeEEEee-CCEEEEEec
Q 011957 386 PNFTDSESPYLLAGL-LGKLHVITN 409 (474)
Q Consensus 386 ~~~~~~r~~~~~~~~-~~~l~v~GG 409 (474)
.. +...+.++.. ++++|++|.
T Consensus 300 -~~--~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 300 -EV--PSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred -CC--CcceEEEEEeCCCceEEECC
Confidence 11 1123445544 677777765
No 80
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.82 E-value=12 Score=37.71 Aligned_cols=148 Identities=14% Similarity=0.030 Sum_probs=77.7
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPT 276 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 276 (474)
..++++|..+++-..+...+..........-+.+|++..... ....++.+|..++..+.+.........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-------~~~~i~~~d~~~~~~~~l~~~~~~~~~---- 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD-------GNPDIYVMDLDGKQLTRLTNGPGIDTE---- 282 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC-------CCccEEEEECCCCCEEECCCCCCCCCC----
Confidence 679999999887666654432222211111134566553321 125789999998887776543211111
Q ss_pred hhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE
Q 011957 277 AFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL 355 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 355 (474)
.. ...++ +|++.....+. ...+.+|..++.++.+..... . . ......-+++.+++
T Consensus 283 -----------~~-~s~dg~~l~~~s~~~g~-----~~iy~~d~~~~~~~~l~~~~~-----~-~-~~~~~spdg~~i~~ 338 (417)
T TIGR02800 283 -----------PS-WSPDGKSIAFTSDRGGS-----PQIYMMDADGGEVRRLTFRGG-----Y-N-ASPSWSPDGDLIAF 338 (417)
T ss_pred -----------EE-ECCCCCEEEEEECCCCC-----ceEEEEECCCCCEEEeecCCC-----C-c-cCeEECCCCCEEEE
Confidence 11 12244 44443222211 123678888888877653111 1 1 11133445665555
Q ss_pred cCCCCCCCceEEEEECCCCceEEec
Q 011957 356 DPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 356 GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
..... ....|+.+|+.+..++.+.
T Consensus 339 ~~~~~-~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 339 VHREG-GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEccC-CceEEEEEeCCCCCeEEcc
Confidence 44322 2358999999987776664
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.75 E-value=9.8 Score=38.07 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=77.1
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCc-eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNA-WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
..+|+|+.+|+.. ..+-+||..++. -+.+-.-..|-..--....++.+++.|+-+ ..+..+|..+
T Consensus 77 R~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd---------~v~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD---------KVVKYWDLST 142 (487)
T ss_pred ecCCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC---------ceEEEEEcCC
Confidence 4589999999753 568899955522 111111111111112234588999988732 3455556555
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC-ceEEcCCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN-SWVEMPVGMGEGWP 336 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-~W~~~~~~~~~~~p 336 (474)
.. . ...+......+- ..++...++.|.+.||+++. .-.||+.+. .|..- ...+.|
T Consensus 143 a~-v-~~~l~~htDYVR------------~g~~~~~~~hivvtGsYDg~-------vrl~DtR~~~~~v~e---lnhg~p 198 (487)
T KOG0310|consen 143 AY-V-QAELSGHTDYVR------------CGDISPANDHIVVTGSYDGK-------VRLWDTRSLTSRVVE---LNHGCP 198 (487)
T ss_pred cE-E-EEEecCCcceeE------------eeccccCCCeEEEecCCCce-------EEEEEeccCCceeEE---ecCCCc
Confidence 44 2 222221111100 02334567889999998864 367888777 44431 333223
Q ss_pred ccccCcceEEEECCEEEE-EcCCCCCCCceEEEEECCCC
Q 011957 337 VRQAGTKLSITVEGELYA-LDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv-~GG~~~~~~~~v~~yd~~~~ 374 (474)
-... ++.-+|.+++ .|| +.+.++|+.++
T Consensus 199 Ve~v----l~lpsgs~iasAgG------n~vkVWDl~~G 227 (487)
T KOG0310|consen 199 VESV----LALPSGSLIASAGG------NSVKVWDLTTG 227 (487)
T ss_pred eeeE----EEcCCCCEEEEcCC------CeEEEEEecCC
Confidence 3221 2233334444 455 57888888754
No 82
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.62 E-value=7.2 Score=34.81 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=47.6
Q ss_pred CEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC-CCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEEC
Q 011957 295 GRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE-GWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDY 371 (474)
Q Consensus 295 ~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~-~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~ 371 (474)
+++|+|-|.. -++||..+..+.- +..+.. ++|......-++... ++++|++.| +..++||.
T Consensus 63 ~~~yfFkg~~---------yw~~~~~~~~~~~-Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg------~~y~ry~~ 126 (194)
T cd00094 63 GKIYFFKGDK---------YWVYTGKNLEPGY-PKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG------DKYWRYDE 126 (194)
T ss_pred CEEEEECCCE---------EEEEcCcccccCC-CcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC------CEEEEEeC
Confidence 8999986632 2677765422211 111111 222210111223333 589999977 57889998
Q ss_pred CCCceEEe-ccCCC--CCCCCCCCCCeEEEeeCCEEEEEecC
Q 011957 372 HDDTWKVV-VGDVP--LPNFTDSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 372 ~~~~W~~v-~~~~p--~~~~~~~r~~~~~~~~~~~l~v~GG~ 410 (474)
..++-..- +..+. .+.++. ....+....++++|+|-|.
T Consensus 127 ~~~~v~~~yP~~i~~~w~g~p~-~idaa~~~~~~~~yfF~g~ 167 (194)
T cd00094 127 KTQKMDPGYPKLIETDFPGVPD-KVDAAFRWLDGYYYFFKGD 167 (194)
T ss_pred CCccccCCCCcchhhcCCCcCC-CcceeEEeCCCcEEEEECC
Confidence 66543210 00010 011221 1222333334899999883
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.02 E-value=6.7 Score=39.01 Aligned_cols=149 Identities=9% Similarity=0.067 Sum_probs=81.7
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEE--ECCE-EEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI--LNNK-LYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~-lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
--|.+.+|.++ .-.++..|-.+|. .+.++...++--..+. -+|. ..+++|.. .-++.||.++.
T Consensus 225 ~plllvaG~d~---~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr---------ky~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDG---TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR---------KYLYSYDLETA 290 (514)
T ss_pred CceEEEecCCC---cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc---------eEEEEeecccc
Confidence 35777888765 3456777777776 4544443333222221 1454 66667753 56889999999
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVR 338 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~ 338 (474)
+-+++.++-.-.... +. .--+..++.+.++-|..++ + ......|+.|-.- +.. +..
T Consensus 291 k~~k~~~~~g~e~~~---------~e---~FeVShd~~fia~~G~~G~-----I--~lLhakT~eli~s---~Ki--eG~ 346 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKS---------ME---RFEVSHDSNFIAIAGNNGH-----I--HLLHAKTKELITS---FKI--EGV 346 (514)
T ss_pred ccccccCCCCcccch---------hh---eeEecCCCCeEEEcccCce-----E--Eeehhhhhhhhhe---eee--ccE
Confidence 988886542111110 00 1124456666666664432 1 4455566666431 111 222
Q ss_pred ccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 339 QAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 339 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
..... ....+.+|+++||+ +.||++|+..+
T Consensus 347 v~~~~-fsSdsk~l~~~~~~-----GeV~v~nl~~~ 376 (514)
T KOG2055|consen 347 VSDFT-FSSDSKELLASGGT-----GEVYVWNLRQN 376 (514)
T ss_pred EeeEE-EecCCcEEEEEcCC-----ceEEEEecCCc
Confidence 22211 22344567788874 48999999987
No 84
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.84 E-value=16 Score=37.13 Aligned_cols=141 Identities=8% Similarity=-0.032 Sum_probs=70.9
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECC-EEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNN-KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
.+++++|+.+++-+++..-...-... ...-++ +|++..... + ...++.+|..+++.+.+.... ....
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spDG~~l~f~sd~~----g---~~~iy~~dl~~g~~~~lt~~g--~~~~-- 339 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPDGKSIYFTSDRG----G---RPQIYRVAASGGSAERLTFQG--NYNA-- 339 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCC----C---CceEEEEECCCCCeEEeecCC--CCcc--
Confidence 57999999998877664322111111 112234 454443211 1 246888999888887764211 1110
Q ss_pred chhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE
Q 011957 276 TAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL 355 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 355 (474)
......-+..|++..+..+ . ....++|+.++..+.+..... ... . ...-+++.+++
T Consensus 340 -----------~~~~SpDG~~Ia~~~~~~~-~----~~I~v~d~~~g~~~~Lt~~~~------~~~-p-~~spdG~~i~~ 395 (433)
T PRK04922 340 -----------RASVSPDGKKIAMVHGSGG-Q----YRIAVMDLSTGSVRTLTPGSL------DES-P-SFAPNGSMVLY 395 (433)
T ss_pred -----------CEEECCCCCEEEEEECCCC-c----eeEEEEECCCCCeEECCCCCC------CCC-c-eECCCCCEEEE
Confidence 0111122344554332111 1 123788998888887764211 111 1 34456665555
Q ss_pred cCCCCCCCceEEEEECCCC
Q 011957 356 DPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 356 GG~~~~~~~~v~~yd~~~~ 374 (474)
.... .....++.+|.+..
T Consensus 396 ~s~~-~g~~~L~~~~~~g~ 413 (433)
T PRK04922 396 ATRE-GGRGVLAAVSTDGR 413 (433)
T ss_pred EEec-CCceEEEEEECCCC
Confidence 4322 12357888888654
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.81 E-value=1.5 Score=36.25 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=55.0
Q ss_pred EEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCc---eeEEEEee
Q 011957 346 ITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHN---IAVLQADV 422 (474)
Q Consensus 346 ~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~---~~~~~~d~ 422 (474)
+.+||-||-..-........|..||.++.+|+.+.. | ...........++.++|+|.++.-..... +.+...+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~--P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe- 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL--P-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE- 77 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe--e-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee-
Confidence 457888888866533446799999999999999863 2 11223445578999999999987755443 4444443
Q ss_pred cCCCCCCCCCC
Q 011957 423 KNHFASMPSAS 433 (474)
Q Consensus 423 ~~~~~~~w~~~ 433 (474)
|-...+|+.-
T Consensus 78 -D~~k~~Wsk~ 87 (129)
T PF08268_consen 78 -DYEKQEWSKK 87 (129)
T ss_pred -ccccceEEEE
Confidence 3334566533
No 86
>PRK13684 Ycf48-like protein; Provisional
Probab=91.65 E-value=14 Score=36.11 Aligned_cols=199 Identities=14% Similarity=0.145 Sum_probs=90.5
Q ss_pred eeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC-CCCcceeeEEEEC-CEE
Q 011957 154 ADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM-SVGRAYSKIGILN-NKL 231 (474)
Q Consensus 154 ~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~~~-~~l 231 (474)
.|.=+.|+......+........+...++..|+.|.. ..+++=+=.-.+|+++... ..+........++ +.+
T Consensus 72 ~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~ 145 (334)
T PRK13684 72 NDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTA 145 (334)
T ss_pred cCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcc
Confidence 3333567765443321112222333345566766521 2233322223579987532 1222222333333 456
Q ss_pred EEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceec
Q 011957 232 YAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVD 311 (474)
Q Consensus 232 yv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~ 311 (474)
|+.|.. ..+++=+-.-.+|+.+..-... .- ..+....+..|+..|
T Consensus 146 ~~~g~~----------G~i~~S~DgG~tW~~~~~~~~g-~~---------------~~i~~~~~g~~v~~g--------- 190 (334)
T PRK13684 146 EMATNV----------GAIYRTTDGGKNWEALVEDAAG-VV---------------RNLRRSPDGKYVAVS--------- 190 (334)
T ss_pred eeeecc----------ceEEEECCCCCCceeCcCCCcc-eE---------------EEEEECCCCeEEEEe---------
Confidence 666542 2344434455689987542211 11 334444444444333
Q ss_pred cceEEE---cCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEE--ECCCCceEEeccCCCCC
Q 011957 312 VGGEVY---DPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVY--DYHDDTWKVVVGDVPLP 386 (474)
Q Consensus 312 ~gg~~y---d~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~y--d~~~~~W~~v~~~~p~~ 386 (474)
..|..| |....+|+.+..+. ...-...+..-+++++++|.. ....+ +-.-.+|+.+. .|..
T Consensus 191 ~~G~i~~s~~~gg~tW~~~~~~~------~~~l~~i~~~~~g~~~~vg~~------G~~~~~s~d~G~sW~~~~--~~~~ 256 (334)
T PRK13684 191 SRGNFYSTWEPGQTAWTPHQRNS------SRRLQSMGFQPDGNLWMLARG------GQIRFNDPDDLESWSKPI--IPEI 256 (334)
T ss_pred CCceEEEEcCCCCCeEEEeeCCC------cccceeeeEcCCCCEEEEecC------CEEEEccCCCCCcccccc--CCcc
Confidence 223344 34446799986521 111122133457889988752 22334 22335899763 2211
Q ss_pred CCCCCCCCeEEEee-CCEEEEEec
Q 011957 387 NFTDSESPYLLAGL-LGKLHVITN 409 (474)
Q Consensus 387 ~~~~~r~~~~~~~~-~~~l~v~GG 409 (474)
......++++.. ++.++++|.
T Consensus 257 --~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 257 --TNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred --ccccceeeEEEcCCCCEEEEcC
Confidence 111112333333 567888776
No 87
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.60 E-value=17 Score=36.86 Aligned_cols=141 Identities=9% Similarity=-0.030 Sum_probs=71.7
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPT 276 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 276 (474)
.+++++|..+.+.+++..-+..-..+....-+.+|++..... ....++.+|..++.++.+.... ....
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~-------g~~~iy~~d~~~g~~~~lt~~~--~~~~--- 334 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG-------GKPQIYKVNVNGGRAERVTFVG--NYNA--- 334 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC-------CCceEEEEECCCCCEEEeecCC--CCcc---
Confidence 689999999998887754322111111111234555543211 1247889999988887764211 1110
Q ss_pred hhhccccccceeeEEEeC-CEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE
Q 011957 277 AFLADLLKPIATGMSSYR-GRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL 355 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 355 (474)
.....-+ +.|++.....+ . .....+|+.++..+.+...... .. . ...-+|+.+++
T Consensus 335 -----------~~~~Spdg~~i~~~~~~~~-~----~~l~~~dl~tg~~~~lt~~~~~------~~-p-~~spdg~~i~~ 390 (430)
T PRK00178 335 -----------RPRLSADGKTLVMVHRQDG-N----FHVAAQDLQRGSVRILTDTSLD------ES-P-SVAPNGTMLIY 390 (430)
T ss_pred -----------ceEECCCCCEEEEEEccCC-c----eEEEEEECCCCCEEEccCCCCC------CC-c-eECCCCCEEEE
Confidence 1112223 34444332111 1 2237899999988887652111 11 1 34456666666
Q ss_pred cCCCCCCCceEEEEECCCC
Q 011957 356 DPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 356 GG~~~~~~~~v~~yd~~~~ 374 (474)
..... ....++..+...+
T Consensus 391 ~~~~~-g~~~l~~~~~~g~ 408 (430)
T PRK00178 391 ATRQQ-GRGVLMLVSINGR 408 (430)
T ss_pred EEecC-CceEEEEEECCCC
Confidence 43211 1245777777543
No 88
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.36 E-value=7.3 Score=36.05 Aligned_cols=114 Identities=28% Similarity=0.326 Sum_probs=67.5
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYF 305 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~ 305 (474)
++.||+.--. -..++.+|+.+++-+.+.. +.+ .+++.. ++++|+...
T Consensus 11 ~g~l~~~D~~---------~~~i~~~~~~~~~~~~~~~-~~~------------------~G~~~~~~~g~l~v~~~--- 59 (246)
T PF08450_consen 11 DGRLYWVDIP---------GGRIYRVDPDTGEVEVIDL-PGP------------------NGMAFDRPDGRLYVADS--- 59 (246)
T ss_dssp TTEEEEEETT---------TTEEEEEETTTTEEEEEES-SSE------------------EEEEEECTTSEEEEEET---
T ss_pred CCEEEEEEcC---------CCEEEEEECCCCeEEEEec-CCC------------------ceEEEEccCCEEEEEEc---
Confidence 5788887432 3689999999987665432 222 344443 789998654
Q ss_pred CcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCC--CCCC--ceEEEEECCCCceEEec
Q 011957 306 WPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG--ALDS--AKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 306 ~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~--~~v~~yd~~~~~W~~v~ 380 (474)
.+..++|+.+++++.+........+..+. .-.++.-+|.||+-.-.. .... ..+++++++ .+.+.+.
T Consensus 60 ------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~-ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 60 ------GGIAVVDPDTGKVTVLADLPDGGVPFNRP-NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp ------TCEEEEETTTTEEEEEEEEETTCSCTEEE-EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred ------CceEEEecCCCcEEEEeeccCCCcccCCC-ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 34478899999999876521110011111 112556678888864321 1112 679999999 6666654
No 89
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.34 E-value=6.8 Score=36.58 Aligned_cols=198 Identities=19% Similarity=0.151 Sum_probs=106.1
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeC-----CCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEe
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDP-----VLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~-----~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
.++++|++.+..+. .++.|.- ..++..+.-.+|.+-.+.+.++++|.+|.--. ....+.+||
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~---------~s~~Ivkyd 95 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY---------NSRNIVKYD 95 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec---------CCceEEEEE
Confidence 46789999887543 4555532 23334444456667777888889999987544 247899999
Q ss_pred CCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCC----CceEEcCCC
Q 011957 255 PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDV----NSWVEMPVG 330 (474)
Q Consensus 255 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t----~~W~~~~~~ 330 (474)
+.++.-..-..||......... ....... -.-.++-+.-|+|+-........ +-.-..|+.+ .+|..--
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~-y~~~~~t--~iD~AvDE~GLWvIYat~~~~g~--ivvskld~~tL~v~~tw~T~~-- 168 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFP-YYWSGYT--DIDFAVDENGLWVIYATEDNNGN--IVVSKLDPETLSVEQTWNTSY-- 168 (250)
T ss_pred CcCCcEEEEEECCccccccccc-eecCCCc--eEEEEEcCCCEEEEEecCCCCCc--EEEEeeCcccCceEEEEEecc--
Confidence 9998766333333322210000 0000000 02234444555554221111100 1124566654 3565421
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee---CCEEEEE
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL---LGKLHVI 407 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~---~~~l~v~ 407 (474)
+....+. +.++=|.||++.........-.++||+.+++=..+ .+|.+ .+-...++..+ +.+||+.
T Consensus 169 -----~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~--~i~f~---~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 169 -----PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV--SIPFP---NPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred -----Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceece--eeeec---cccCceEeeeECCCCCeEEEE
Confidence 2333333 56777899999776544455678999998865543 23332 22223455544 5788886
Q ss_pred ec
Q 011957 408 TN 409 (474)
Q Consensus 408 GG 409 (474)
--
T Consensus 237 d~ 238 (250)
T PF02191_consen 237 DN 238 (250)
T ss_pred EC
Confidence 53
No 90
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.02 E-value=12 Score=34.97 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=89.9
Q ss_pred CccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCcee---ecCCCC---------CCcceeeEEEECCEEEEEecee
Q 011957 171 GFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWS---EVSSMS---------VGRAYSKIGILNNKLYAVGGVT 238 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~---~~~~~p---------~~r~~~~~~~~~~~lyv~GG~~ 238 (474)
+..+...++.+|.+|.--. ..+.+.+||+.+++=. .+|..- .+-...-.++-++-|+|+-...
T Consensus 68 ~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~ 142 (250)
T PF02191_consen 68 PWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE 142 (250)
T ss_pred eeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC
Confidence 3456666778888887532 3689999999998744 454321 1122344566678888886654
Q ss_pred cCCCCCccCceEEEEeCCC----CceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccce
Q 011957 239 RGPGGLTPLQSAEVFDPRT----GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGG 314 (474)
Q Consensus 239 ~~~~~~~~~~~~~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg 314 (474)
... + .-.+-..|+.+ .+|.. ..+.+..+ .+.++=|.||++...+...... .
T Consensus 143 ~~~-g---~ivvskld~~tL~v~~tw~T--~~~k~~~~----------------naFmvCGvLY~~~s~~~~~~~I---~ 197 (250)
T PF02191_consen 143 DNN-G---NIVVSKLDPETLSVEQTWNT--SYPKRSAG----------------NAFMVCGVLYATDSYDTRDTEI---F 197 (250)
T ss_pred CCC-C---cEEEEeeCcccCceEEEEEe--ccCchhhc----------------ceeeEeeEEEEEEECCCCCcEE---E
Confidence 221 1 12344556654 34653 23333332 2334458999977655432211 2
Q ss_pred EEEcCCCCceEEcCCCCCCCCCccccCcceEEEE---CCEEEEEcCCCCCCCceEEEEECC
Q 011957 315 EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV---EGELYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 315 ~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~ 372 (474)
.+||+.+++=..+..+. +.+...+. +..+ +.+||+.. .+.+..|+..
T Consensus 198 yafDt~t~~~~~~~i~f----~~~~~~~~-~l~YNP~dk~LY~wd------~G~~v~Y~v~ 247 (250)
T PF02191_consen 198 YAFDTYTGKEEDVSIPF----PNPYGNIS-MLSYNPRDKKLYAWD------NGYQVTYDVR 247 (250)
T ss_pred EEEECCCCceeceeeee----ccccCceE-eeeECCCCCeEEEEE------CCeEEEEEEE
Confidence 79999988765544322 22222222 4444 46788884 3456667654
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.89 E-value=7.6 Score=38.66 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCC--Ccceee-EEEECCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSV--GRAYSK-IGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
|....+++|. ..-++.||..+.+-.++.++-. .+.... -+...+++.++-|.. .-+......|
T Consensus 269 G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---------G~I~lLhakT 334 (514)
T KOG2055|consen 269 GHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAKT 334 (514)
T ss_pred CceEEEeccc-----ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---------ceEEeehhhh
Confidence 3326666664 3568899999999888865531 122211 233455566666643 3566777788
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+.|..--.++..... .+.......||+.||.. -++++|..++.-...- +- -.
T Consensus 335 ~eli~s~KieG~v~~---------------~~fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf--~D---~G 386 (514)
T KOG2055|consen 335 KELITSFKIEGVVSD---------------FTFSSDSKELLASGGTG--------EVYVWNLRQNSCLHRF--VD---DG 386 (514)
T ss_pred hhhhheeeeccEEee---------------EEEecCCcEEEEEcCCc--------eEEEEecCCcceEEEE--ee---cC
Confidence 887643333322222 33333344566665522 1277888877322111 11 12
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCC
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
...+.+.+...++.++.+|- ..+-|-+||.++
T Consensus 387 ~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s 418 (514)
T KOG2055|consen 387 SVHGTSLCISLNGSYLATGS----DSGIVNIYDGNS 418 (514)
T ss_pred ccceeeeeecCCCceEEecc----CcceEEEeccch
Confidence 33444545567787666654 234566787554
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.77 E-value=4.1 Score=38.03 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=70.6
Q ss_pred EEE-ECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEecc
Q 011957 224 IGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQS 302 (474)
Q Consensus 224 ~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG 302 (474)
... .++.||.--|.. + .+.+..||+++++-....++|..-.+ -+++.++++||.+.=
T Consensus 50 L~~~~~g~LyESTG~y----G---~S~l~~~d~~tg~~~~~~~l~~~~Fg---------------EGit~~~d~l~qLTW 107 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLY----G---QSSLRKVDLETGKVLQSVPLPPRYFG---------------EGITILGDKLYQLTW 107 (264)
T ss_dssp EEEEETTEEEEEECST----T---EEEEEEEETTTSSEEEEEE-TTT--E---------------EEEEEETTEEEEEES
T ss_pred EEecCCCEEEEeCCCC----C---cEEEEEEECCCCcEEEEEECCccccc---------------eeEEEECCEEEEEEe
Confidence 444 578999877753 1 36899999999987777777765444 788999999999643
Q ss_pred CCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 303 LYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 303 ~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.. --+.+||+.+ .+++.. . +....|.+ ++..+..|++-.| +..++.+||++-+
T Consensus 108 k~-------~~~f~yd~~t--l~~~~~-~----~y~~EGWG-Lt~dg~~Li~SDG-----S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 108 KE-------GTGFVYDPNT--LKKIGT-F----PYPGEGWG-LTSDGKRLIMSDG-----SSRLYFLDPETFK 160 (264)
T ss_dssp SS-------SEEEEEETTT--TEEEEE-E----E-SSS--E-EEECSSCEEEE-S-----SSEEEEE-TTT-S
T ss_pred cC-------CeEEEEcccc--ceEEEE-E----ecCCcceE-EEcCCCEEEEECC-----ccceEEECCcccc
Confidence 22 2247899975 454433 1 11234444 6777888888888 3589999998643
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.73 E-value=21 Score=36.25 Aligned_cols=180 Identities=8% Similarity=0.006 Sum_probs=93.1
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEE-EC-CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI-LN-NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 273 (474)
...++++|+.+++-+.+...+..- ..... -+ .+|++..... + ...++++|..+...+.+...+.....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~--~~~~~SpDG~~la~~~~~~----g---~~~Iy~~d~~~~~~~~lt~~~~~~~~- 291 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN--GAPAWSPDGSKLAFVLSKD----G---NPEIYVMDLASRQLSRVTNHPAIDTE- 291 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc--CCeEECCCCCEEEEEEccC----C---CceEEEEECCCCCeEEcccCCCCcCC-
Confidence 357999999998877776443211 11122 13 4555433211 1 25799999999988877542211111
Q ss_pred ccchhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEEC-CE
Q 011957 274 LPTAFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVE-GE 351 (474)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~-~~ 351 (474)
.. ..-+| +|++.....+. ...+.+|..+++++++.... ...... ...-+ +.
T Consensus 292 --------------~~-~spDg~~i~f~s~~~g~-----~~iy~~d~~~g~~~~lt~~~------~~~~~~-~~Spdg~~ 344 (430)
T PRK00178 292 --------------PF-WGKDGRTLYFTSDRGGK-----PQIYKVNVNGGRAERVTFVG------NYNARP-RLSADGKT 344 (430)
T ss_pred --------------eE-ECCCCCEEEEEECCCCC-----ceEEEEECCCCCEEEeecCC------CCccce-EECCCCCE
Confidence 11 22233 45554322211 22367888888888775311 111111 22333 44
Q ss_pred EEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEee
Q 011957 352 LYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 352 lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
|++...... ...++.+|+++++.+.+.. .... ......-+|+.+++....++...+...+.
T Consensus 345 i~~~~~~~~--~~~l~~~dl~tg~~~~lt~-~~~~-------~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 345 LVMVHRQDG--NFHVAAQDLQRGSVRILTD-TSLD-------ESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEccCC--ceEEEEEECCCCCEEEccC-CCCC-------CCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 555443221 3479999999998887742 1110 01134456777776664444444444544
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.51 E-value=3.2 Score=34.23 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=52.8
Q ss_pred EEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC--CCceEEE
Q 011957 291 SSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL--DSAKIKV 368 (474)
Q Consensus 291 ~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--~~~~v~~ 368 (474)
+.+||-+|-..-...... ....+||.++.+|+.+..|.. +.........+.++|+|-++.-.... ..-++|+
T Consensus 2 icinGvly~~a~~~~~~~---~~IvsFDv~~E~f~~i~~P~~---~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDN---NVIVSFDVRSEKFRFIKLPED---PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred EEECcEEEeEEEECCCCC---cEEEEEEcCCceEEEEEeeee---eccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 345777776543311000 223799999999999876311 12222233388999999998654322 2347888
Q ss_pred E-ECCCCceEEeccCCC
Q 011957 369 Y-DYHDDTWKVVVGDVP 384 (474)
Q Consensus 369 y-d~~~~~W~~v~~~~p 384 (474)
. |.++++|.+....+|
T Consensus 76 LeD~~k~~Wsk~~~~lp 92 (129)
T PF08268_consen 76 LEDYEKQEWSKKHIVLP 92 (129)
T ss_pred eeccccceEEEEEEECC
Confidence 7 466789998643344
No 95
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.21 E-value=23 Score=36.02 Aligned_cols=147 Identities=11% Similarity=-0.020 Sum_probs=71.6
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECC-EEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNN-KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVL 274 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 274 (474)
..+++++|..+..-+++..-+..-.. ....-++ +|++.... .+ ...++++|..+...+.+..... ...
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~spDG~~i~f~s~~----~g---~~~Iy~~d~~g~~~~~lt~~~~-~~~-- 337 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYSPDGSQIVFESDR----SG---SPQLYVMNADGSNPRRISFGGG-RYS-- 337 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCc-eeEcCCCCEEEEEECC----CC---CCeEEEEECCCCCeEEeecCCC-ccc--
Confidence 36799999999887777543321111 1112234 44433211 11 2578999988877776643211 111
Q ss_pred cchhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEE
Q 011957 275 PTAFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELY 353 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ly 353 (474)
.....-+| .|++.. ..... .....+|+.++..+.+.... ..... ...-+|+.+
T Consensus 338 -------------~~~~SpdG~~ia~~~-~~~~~----~~i~~~d~~~~~~~~lt~~~-------~~~~p-~~spDG~~i 391 (435)
T PRK05137 338 -------------TPVWSPRGDLIAFTK-QGGGQ----FSIGVMKPDGSGERILTSGF-------LVEGP-TWAPNGRVI 391 (435)
T ss_pred -------------CeEECCCCCEEEEEE-cCCCc----eEEEEEECCCCceEeccCCC-------CCCCC-eECCCCCEE
Confidence 11122344 343322 11111 22367888777666654311 11111 334455554
Q ss_pred EEcCC-CCCC-CceEEEEECCCCceEEe
Q 011957 354 ALDPS-GALD-SAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 354 v~GG~-~~~~-~~~v~~yd~~~~~W~~v 379 (474)
++... .... ...++.+|.+...-+.+
T Consensus 392 ~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 392 MFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EEEEccCCCCCcceEEEEECCCCceEEc
Confidence 44322 2111 24789999887665554
No 96
>PTZ00421 coronin; Provisional
Probab=90.03 E-value=26 Score=36.35 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=52.5
Q ss_pred CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCc
Q 011957 229 NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWP 307 (474)
Q Consensus 229 ~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~ 307 (474)
+.+++.||.+ ..+.+||..+++-.. .+....... .+++ ..++.+.+.|+.++
T Consensus 138 ~~iLaSgs~D---------gtVrIWDl~tg~~~~--~l~~h~~~V--------------~sla~spdG~lLatgs~Dg-- 190 (493)
T PTZ00421 138 MNVLASAGAD---------MVVNVWDVERGKAVE--VIKCHSDQI--------------TSLEWNLDGSLLCTTSKDK-- 190 (493)
T ss_pred CCEEEEEeCC---------CEEEEEECCCCeEEE--EEcCCCCce--------------EEEEEECCCCEEEEecCCC--
Confidence 4577777753 578899998764221 111111110 2222 34677777776553
Q ss_pred ceeccceEEEcCCCCceE-EcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 308 FFVDVGGEVYDPDVNSWV-EMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 308 ~~~~~gg~~yd~~t~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
...+||+.+++=. .+.. . . .... .......++..++..|.+....+.|..||+.+.
T Consensus 191 -----~IrIwD~rsg~~v~tl~~-H-~---~~~~-~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 191 -----KLNIIDPRDGTIVSSVEA-H-A---SAKS-QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred -----EEEEEECCCCcEEEEEec-C-C---CCcc-eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 2368898876521 2211 0 0 0000 011122233344444433333468999998754
No 97
>smart00284 OLF Olfactomedin-like domains.
Probab=89.90 E-value=17 Score=33.93 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=84.7
Q ss_pred ccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC------------cceeeEEEECCEEEEEeceec
Q 011957 172 FCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG------------RAYSKIGILNNKLYAVGGVTR 239 (474)
Q Consensus 172 r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~------------r~~~~~~~~~~~lyv~GG~~~ 239 (474)
-.+...++.+|.||.--. ..+.+.+||+.+++=.....+|.+ -...-.++-++-|+|+=....
T Consensus 74 ~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~ 148 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ 148 (255)
T ss_pred cccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence 456677888999998532 247899999999885433333322 122345666677887754321
Q ss_pred CCCCCccCceEEEEeCCCC----ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceE
Q 011957 240 GPGGLTPLQSAEVFDPRTG----LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGE 315 (474)
Q Consensus 240 ~~~~~~~~~~~~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~ 315 (474)
.. + .-.+-..||.+- +|.. +.+.+..+ .+.++=|.||++-......... ..
T Consensus 149 ~~-g---~ivvSkLnp~tL~ve~tW~T--~~~k~sa~----------------naFmvCGvLY~~~s~~~~~~~I---~y 203 (255)
T smart00284 149 NA-G---KIVISKLNPATLTIENTWIT--TYNKRSAS----------------NAFMICGILYVTRSLGSKGEKV---FY 203 (255)
T ss_pred CC-C---CEEEEeeCcccceEEEEEEc--CCCccccc----------------ccEEEeeEEEEEccCCCCCcEE---EE
Confidence 11 1 123345666553 4664 23322222 2233448999975422211111 16
Q ss_pred EEcCCCCceEEcCCCCCCCCCccccCcceEEEE---CCEEEEEcCCCCCCCceEEEEECC
Q 011957 316 VYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV---EGELYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 316 ~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~ 372 (474)
+||+.+++=..+..+. +.. .++.++..+ +.+||+.. .+.+..||++
T Consensus 204 ayDt~t~~~~~~~i~f----~n~-y~~~s~l~YNP~d~~LY~wd------ng~~l~Y~v~ 252 (255)
T smart00284 204 AYDTNTGKEGHLDIPF----ENM-YEYISMLDYNPNDRKLYAWN------NGHLVHYDIA 252 (255)
T ss_pred EEECCCCccceeeeee----ccc-cccceeceeCCCCCeEEEEe------CCeEEEEEEE
Confidence 8999987633332211 222 222223433 46788873 3466667654
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=89.48 E-value=27 Score=35.74 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=70.5
Q ss_pred ceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEE
Q 011957 248 QSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~ 326 (474)
..++++|+.+++-+.+...+..... .. ..-+| +|++....++. ...+.+|.++++.++
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~---------------~~-wSPDG~~La~~~~~~g~-----~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA---------------PR-FSPDGKKLALVLSKDGQ-----PEIYVVDIATKALTR 300 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC---------------ee-ECCCCCEEEEEEeCCCC-----eEEEEEECCCCCeEE
Confidence 5789999988877766554321111 11 22233 35443222211 223778999998888
Q ss_pred cCCCCCCCCCccccCcceEEEECCE-EEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEE
Q 011957 327 MPVGMGEGWPVRQAGTKLSITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLH 405 (474)
Q Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~ 405 (474)
+..... ..... ...-+++ |++..... ....++.+|.++++++.+... +. ........-+|+.+
T Consensus 301 lt~~~~------~~~~p-~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~~~~Lt~~---g~----~~~~~~~SpDG~~l 364 (448)
T PRK04792 301 ITRHRA------IDTEP-SWHPDGKSLIFTSERG--GKPQIYRVNLASGKVSRLTFE---GE----QNLGGSITPDGRSM 364 (448)
T ss_pred CccCCC------Cccce-EECCCCCEEEEEECCC--CCceEEEEECCCCCEEEEecC---CC----CCcCeeECCCCCEE
Confidence 765211 11111 2233444 54443222 235899999999998887411 10 01112234455544
Q ss_pred EEecCCCCceeEEEEeec
Q 011957 406 VITNDANHNIAVLQADVK 423 (474)
Q Consensus 406 v~GG~~~~~~~~~~~d~~ 423 (474)
++.+..++...+..+|+.
T Consensus 365 ~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLE 382 (448)
T ss_pred EEEEecCCceEEEEEECC
Confidence 444444444455556654
No 99
>PRK04792 tolB translocation protein TolB; Provisional
Probab=88.55 E-value=31 Score=35.28 Aligned_cols=148 Identities=14% Similarity=0.036 Sum_probs=78.9
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
...++++|+.+++-+.+...+..-......--+.+|++....+ + ...++.+|..+++.+.+........
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----g---~~~Iy~~dl~tg~~~~lt~~~~~~~---- 309 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----G---QPEIYVVDIATKALTRITRHRAIDT---- 309 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----C---CeEEEEEECCCCCeEECccCCCCcc----
Confidence 3679999999887776655442212111112244566553321 1 2579999999998887754221111
Q ss_pred chhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECC-EEE
Q 011957 276 TAFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEG-ELY 353 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~-~ly 353 (474)
.....-++ .|++.....+. ...+.+|..+++++.+..... .... . ...-+| .|+
T Consensus 310 ------------~p~wSpDG~~I~f~s~~~g~-----~~Iy~~dl~~g~~~~Lt~~g~-----~~~~-~-~~SpDG~~l~ 365 (448)
T PRK04792 310 ------------EPSWHPDGKSLIFTSERGGK-----PQIYRVNLASGKVSRLTFEGE-----QNLG-G-SITPDGRSMI 365 (448)
T ss_pred ------------ceEECCCCCEEEEEECCCCC-----ceEEEEECCCCCEEEEecCCC-----CCcC-e-eECCCCCEEE
Confidence 11122344 44443322211 223778999999988753111 1111 1 333454 444
Q ss_pred EEcCCCCCCCceEEEEECCCCceEEec
Q 011957 354 ALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 354 v~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
+.+... ....|+.+|+++++.+.+.
T Consensus 366 ~~~~~~--g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 366 MVNRTN--GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred EEEecC--CceEEEEEECCCCCeEEcc
Confidence 443222 2347999999999887764
No 100
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=88.16 E-value=31 Score=34.67 Aligned_cols=118 Identities=10% Similarity=-0.148 Sum_probs=60.1
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceE
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWS 261 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 261 (474)
..|++....++ ..+++.+|+.++..+.+..............-+.+|++..... ....++.+|..+..++
T Consensus 246 ~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~-------g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 246 SKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG-------GSPQIYMMDADGGEVR 315 (417)
T ss_pred CEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC-------CCceEEEEECCCCCEE
Confidence 34655433221 3579999999988777654322111111111233454443211 1247899999988887
Q ss_pred EccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCC
Q 011957 262 EILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV 329 (474)
Q Consensus 262 ~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~ 329 (474)
.+..-..... .....-+++.+++....... .....+|+.++.++.+..
T Consensus 316 ~l~~~~~~~~----------------~~~~spdg~~i~~~~~~~~~----~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 316 RLTFRGGYNA----------------SPSWSPDGDLIAFVHREGGG----FNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EeecCCCCcc----------------CeEECCCCCEEEEEEccCCc----eEEEEEeCCCCCeEEccC
Confidence 6643211111 11123355555544332211 123788998887777654
No 101
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.01 E-value=56 Score=37.53 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=85.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC-------CC--------CcceeeEEEE--CCEEEEEeceecCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM-------SV--------GRAYSKIGIL--NNKLYAVGGVTRGPGG 243 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-------p~--------~r~~~~~~~~--~~~lyv~GG~~~~~~~ 243 (474)
++.|||.-.. .+.+.++|+.++.=+.+..- .. -..-..+++. ++.|||....
T Consensus 635 gn~LYVaDt~-----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------ 703 (1057)
T PLN02919 635 KNLLYVADTE-----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------ 703 (1057)
T ss_pred CCEEEEEeCC-----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------
Confidence 5678887542 24677888877665444210 00 0011233333 6789998653
Q ss_pred CccCceEEEEeCCCCceEEccCCCc--cccccccchhhccccccceeeEEEe-C-CEEEEeccCCCCcceeccceEEEcC
Q 011957 244 LTPLQSAEVFDPRTGLWSEILSMPF--SKAQVLPTAFLADLLKPIATGMSSY-R-GRLFVPQSLYFWPFFVDVGGEVYDP 319 (474)
Q Consensus 244 ~~~~~~~~~yd~~t~~W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~gG~~~~~~~~~~gg~~yd~ 319 (474)
.+.+.+||+.++....+..-.. ...+..+. ......+ .++++. + +.|||....+ -...+||+
T Consensus 704 ---~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~--~~~~~~P--~GIavspdG~~LYVADs~n-------~~Irv~D~ 769 (1057)
T PLN02919 704 ---QHQIWEYNISDGVTRVFSGDGYERNLNGSSGT--STSFAQP--SGISLSPDLKELYIADSES-------SSIRALDL 769 (1057)
T ss_pred ---CCeEEEEECCCCeEEEEecCCccccCCCCccc--cccccCc--cEEEEeCCCCEEEEEECCC-------CeEEEEEC
Confidence 2578899988776654421100 00000000 0000000 333332 3 4599865443 23478888
Q ss_pred CCCceEEcCCC-------CC-----CCC-C--ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 320 DVNSWVEMPVG-------MG-----EGW-P--VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 320 ~t~~W~~~~~~-------~~-----~~~-p--~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.++.-+.+... .. .+. . ....-.+.++.-+|.|||.... .+.|.+||++++....+.
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEe
Confidence 87654322110 00 000 0 0000012234456789998753 368999999998877664
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.91 E-value=36 Score=35.26 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=43.5
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCC----CCc-ceeeEEEEC-CEEEEEeceecCCCCCccCc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMS----VGR-AYSKIGILN-NKLYAVGGVTRGPGGLTPLQ 248 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p----~~r-~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~ 248 (474)
-++.++.||+... ...++.+|..|.+ |+.-...+ .+. .....+..+ ++||+... ..
T Consensus 57 Pvv~~g~vy~~~~------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~----------~g 120 (488)
T cd00216 57 PLVVDGDMYFTTS------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF----------DG 120 (488)
T ss_pred CEEECCEEEEeCC------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC----------CC
Confidence 4567999998653 2568889988765 87633222 111 111234456 88887543 24
Q ss_pred eEEEEeCCCCc--eEEc
Q 011957 249 SAEVFDPRTGL--WSEI 263 (474)
Q Consensus 249 ~~~~yd~~t~~--W~~~ 263 (474)
.+..+|.++.+ |+.-
T Consensus 121 ~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 121 RLVALDAETGKQVWKFG 137 (488)
T ss_pred eEEEEECCCCCEeeeec
Confidence 78899988764 8754
No 103
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.49 E-value=25 Score=33.86 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=80.6
Q ss_pred eeeccccccccccCCC-CccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecC-CCCCCcceeeEEEE-CCEE
Q 011957 155 DLIRGWLGKKDALDRM-GFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVS-SMSVGRAYSKIGIL-NNKL 231 (474)
Q Consensus 155 ~~~~~w~~~~~~~~p~-pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~~~l 231 (474)
|-=+.|+......... .....++...++..|++|-. .-++.-.=.-.+|++++ +.+.+-..+....+ ++.+
T Consensus 44 DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~ 117 (302)
T PF14870_consen 44 DGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSA 117 (302)
T ss_dssp STTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEE
T ss_pred CCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcE
Confidence 3335676655433221 12233444567889988731 23444333457899986 23344444444444 5677
Q ss_pred EEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCccee
Q 011957 232 YAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFV 310 (474)
Q Consensus 232 yv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~ 310 (474)
+++|.. ..+++=.-.-.+|+.+..-...-. ..+. .-+|++.+++. .+.-
T Consensus 118 ~l~~~~----------G~iy~T~DgG~tW~~~~~~~~gs~----------------~~~~r~~dG~~vavs~-~G~~--- 167 (302)
T PF14870_consen 118 ELAGDR----------GAIYRTTDGGKTWQAVVSETSGSI----------------NDITRSSDGRYVAVSS-RGNF--- 167 (302)
T ss_dssp EEEETT------------EEEESSTTSSEEEEE-S----E----------------EEEEE-TTS-EEEEET-TSSE---
T ss_pred EEEcCC----------CcEEEeCCCCCCeeEcccCCccee----------------EeEEECCCCcEEEEEC-cccE---
Confidence 776542 234444445568998754221111 2222 34556554432 1100
Q ss_pred ccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEE--CCCCceEEeccCCCCCCC
Q 011957 311 DVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYD--YHDDTWKVVVGDVPLPNF 388 (474)
Q Consensus 311 ~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd--~~~~~W~~v~~~~p~~~~ 388 (474)
-...|+....|+.....- .+.-......-++.|+++. . ...+..=| ....+|.+-. .|.
T Consensus 168 ---~~s~~~G~~~w~~~~r~~------~~riq~~gf~~~~~lw~~~-~----Gg~~~~s~~~~~~~~w~~~~--~~~--- 228 (302)
T PF14870_consen 168 ---YSSWDPGQTTWQPHNRNS------SRRIQSMGFSPDGNLWMLA-R----GGQIQFSDDPDDGETWSEPI--IPI--- 228 (302)
T ss_dssp ---EEEE-TT-SS-EEEE--S------SS-EEEEEE-TTS-EEEEE-T----TTEEEEEE-TTEEEEE---B---TT---
T ss_pred ---EEEecCCCccceEEccCc------cceehhceecCCCCEEEEe-C----CcEEEEccCCCCcccccccc--CCc---
Confidence 034577778899876521 1111121344567787774 1 12444444 3455787732 221
Q ss_pred CCCCCC-eEEE-eeCCEEEEEecCC
Q 011957 389 TDSESP-YLLA-GLLGKLHVITNDA 411 (474)
Q Consensus 389 ~~~r~~-~~~~-~~~~~l~v~GG~~ 411 (474)
...... ..++ .-++.+++.||.+
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccCceeeEEEEecCCCCEEEEeCCc
Confidence 111121 2223 2357899988843
No 104
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.32 E-value=15 Score=38.50 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=66.0
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCC--------cceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVG--------RAYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
-++.++.||+... ...++.+|..|.+ |+.-...+.. ......++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------- 128 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC----------
Confidence 3457899999654 2468888988865 8764332211 112234667888887432
Q ss_pred CceEEEEeCCCCc--eEEcc-CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 247 LQSAEVFDPRTGL--WSEIL-SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 247 ~~~~~~yd~~t~~--W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
...+.++|.++++ |+.-. .+... ... ..+-++.+++||+-....... .+-....||.++++
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~-------------tssP~v~~g~Vivg~~~~~~~--~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAG-YTI-------------TAAPLVVKGKVITGISGGEFG--VRGYVTAYDAKTGK 192 (527)
T ss_pred CCEEEEEECCCCCEEeeccccccccc-ccc-------------cCCcEEECCEEEEeecccccC--CCcEEEEEECCCCc
Confidence 1468899998875 76432 11110 110 023456788888842211100 00123688998875
Q ss_pred --eEE
Q 011957 324 --WVE 326 (474)
Q Consensus 324 --W~~ 326 (474)
|+.
T Consensus 193 ~lW~~ 197 (527)
T TIGR03075 193 LVWRR 197 (527)
T ss_pred eeEec
Confidence 774
No 105
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.32 E-value=15 Score=33.59 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=52.1
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEEC--CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILN--NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVL 274 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 274 (474)
+.+.++|..|.+--+- .-.--.....+.++ ..+.+-|+++ .++.+||-.+++-+++.-+...+.+
T Consensus 81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD---------~s~r~wDCRS~s~ePiQildea~D~-- 147 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD---------SSVRLWDCRSRSFEPIQILDEAKDG-- 147 (307)
T ss_pred ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc---------ceeEEEEcccCCCCccchhhhhcCc--
Confidence 6788999999763210 00000011223333 3556666654 6899999999998888777777776
Q ss_pred cchhhccccccceeeEEEeCCEEEEeccCCCCc
Q 011957 275 PTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP 307 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~ 307 (474)
...+.+.+...+.|..++.-
T Consensus 148 -------------V~Si~v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 148 -------------VSSIDVAEHEIVAGSVDGTV 167 (307)
T ss_pred -------------eeEEEecccEEEeeccCCcE
Confidence 44456667767767665543
No 106
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.30 E-value=36 Score=34.53 Aligned_cols=182 Identities=8% Similarity=0.013 Sum_probs=95.5
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEEC-CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILN-NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
.++|++|+.+++=+.+...+.. .......-+ .+|.+.-... ...+++.+|..++.++.+...+..-..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~-------g~~~Iy~~dl~~g~~~~LT~~~~~d~~--- 281 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPK-------GQPDIYLYDTNTKTLTQITNYPGIDVN--- 281 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccC-------CCcEEEEEECCCCcEEEcccCCCccCc---
Confidence 4899999999877776543221 111122224 4565544321 136899999999999988654421111
Q ss_pred chhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCE-EEE
Q 011957 276 TAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGE-LYA 354 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-lyv 354 (474)
.....-+.+||+.....+. ...+++|..+++.+++... .. .. . ...-+|+ |..
T Consensus 282 ------------p~~SPDG~~I~F~Sdr~g~-----~~Iy~~dl~~g~~~rlt~~-g~----~~---~-~~SPDG~~Ia~ 335 (419)
T PRK04043 282 ------------GNFVEDDKRIVFVSDRLGY-----PNIFMKKLNSGSVEQVVFH-GK----NN---S-SVSTYKNYIVY 335 (419)
T ss_pred ------------cEECCCCCEEEEEECCCCC-----ceEEEEECCCCCeEeCccC-CC----cC---c-eECCCCCEEEE
Confidence 1111223456665433221 2337889998888777541 10 11 1 2334444 433
Q ss_pred EcCCCCC----CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEeec
Q 011957 355 LDPSGAL----DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADVK 423 (474)
Q Consensus 355 ~GG~~~~----~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~~ 423 (474)
....... ....++.+|++++.++.+... . ....-...-+|+.+++-....+...+..+++.
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C-------CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 3322111 225899999999999887521 1 11112334566544444433444445555543
No 107
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.27 E-value=30 Score=33.55 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=37.4
Q ss_pred EEEEEcCcCCCcccceEEEEeCCC-CceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC-CC
Q 011957 183 CLYVLGGFSRALAMRNVWRYDPVL-NAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR-TG 258 (474)
Q Consensus 183 ~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~-t~ 258 (474)
++|+..+. .+.+.+||..+ .+++.+...+.....+.++.- +..||+.+.. ...+..|+.. ++
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~---------~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP---------EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC---------CCcEEEEEECCCC
Confidence 57777543 35677788754 466666544433222223222 4467775431 2456677775 45
Q ss_pred ceEEccC
Q 011957 259 LWSEILS 265 (474)
Q Consensus 259 ~W~~~~~ 265 (474)
+++.+..
T Consensus 69 ~l~~~~~ 75 (330)
T PRK11028 69 ALTFAAE 75 (330)
T ss_pred ceEEeee
Confidence 6765543
No 108
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.94 E-value=15 Score=38.45 Aligned_cols=127 Identities=16% Similarity=0.251 Sum_probs=69.2
Q ss_pred eEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEe
Q 011957 223 KIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVP 300 (474)
Q Consensus 223 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 300 (474)
+-++.++.||+.... ..++.+|.++++ |+.-...+......... . ....+.++.+++||+.
T Consensus 64 tPvv~~g~vyv~s~~----------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~----~---~~~rg~av~~~~v~v~ 126 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY----------SRVYALDAKTGKELWKYDPKLPDDVIPVMCC----D---VVNRGVALYDGKVFFG 126 (527)
T ss_pred CCEEECCEEEEECCC----------CcEEEEECCCCceeeEecCCCCccccccccc----c---cccccceEECCEEEEE
Confidence 346679999996542 358889988764 88654332111000000 0 0003446778899874
Q ss_pred ccCCCCcceeccceEEEcCCCCc--eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCC-CCCCCceEEEEECCCC--c
Q 011957 301 QSLYFWPFFVDVGGEVYDPDVNS--WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPS-GALDSAKIKVYDYHDD--T 375 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~-~~~~~~~v~~yd~~~~--~ 375 (474)
.. + -...++|.++++ |+.-..... ......++-++.+++||+-... .......|..||.++. .
T Consensus 127 t~-d-------g~l~ALDa~TGk~~W~~~~~~~~----~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 127 TL-D-------ARLVALDAKTGKVVWSKKNGDYK----AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred cC-C-------CEEEEEECCCCCEEeeccccccc----ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 31 1 123788998876 875332111 1111112246778888775321 1112468999999887 4
Q ss_pred eEE
Q 011957 376 WKV 378 (474)
Q Consensus 376 W~~ 378 (474)
|+.
T Consensus 195 W~~ 197 (527)
T TIGR03075 195 WRR 197 (527)
T ss_pred Eec
Confidence 765
No 109
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.85 E-value=16 Score=35.35 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred ceEEEEeCCCC-----ceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc-eEEccCCCccc
Q 011957 197 RNVWRYDPVLN-----AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL-WSEILSMPFSK 270 (474)
Q Consensus 197 ~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~r 270 (474)
..+.+|+.... +.+.+.....+-.-.+++.++++|.+..| +.+.+|+...++ +...+.+..+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-----------~~l~v~~l~~~~~l~~~~~~~~~~ 130 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-----------NKLYVYDLDNSKTLLKKAFYDSPF 130 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-----------TEEEEEEEETTSSEEEEEEE-BSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-----------CEEEEEEccCcccchhhheecceE
Confidence 67889998885 56666544444445677778999777666 468889888888 88887665544
Q ss_pred cccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCC
Q 011957 271 AQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV 329 (474)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~ 329 (474)
.- .++.++++.|++-.-..+ +....||.+..+-..++.
T Consensus 131 ~i---------------~sl~~~~~~I~vgD~~~s------v~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 131 YI---------------TSLSVFKNYILVGDAMKS------VSLLRYDEENNKLILVAR 168 (321)
T ss_dssp SE---------------EEEEEETTEEEEEESSSS------EEEEEEETTTE-EEEEEE
T ss_pred EE---------------EEEeccccEEEEEEcccC------EEEEEEEccCCEEEEEEe
Confidence 33 677788898887322221 323577887666777665
No 110
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.06 E-value=65 Score=37.00 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC----------CC---CcceeeEEEE--CCEEEEEeceecCCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM----------SV---GRAYSKIGIL--NNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~----------p~---~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 245 (474)
++.|||.... .+.+++||+.++....+..- .. -..-..+++. ++.|||.-..+
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------- 761 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------- 761 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------
Confidence 6789987532 35789999887765433210 00 0111123332 35699986532
Q ss_pred cCceEEEEeCCCCceEEccC----CCccc--cccc-cchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEE
Q 011957 246 PLQSAEVFDPRTGLWSEILS----MPFSK--AQVL-PTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVY 317 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~----~p~~r--~~~~-~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~y 317 (474)
+.+.+||+.++.-..+.. .+... .+.. ..+.......+ .+++ .-+|.|||....+ ....+|
T Consensus 762 --~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P--~Gvavd~dG~LYVADs~N-------~rIrvi 830 (1057)
T PLN02919 762 --SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP--LGVLCAKDGQIYVADSYN-------HKIKKL 830 (1057)
T ss_pred --CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC--ceeeEeCCCcEEEEECCC-------CEEEEE
Confidence 689999998776433211 00000 0000 00000000011 2323 3467899965433 234889
Q ss_pred cCCCCceEEcCCCCCCCCC-----ccc--cCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 318 DPDVNSWVEMPVGMGEGWP-----VRQ--AGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 318 d~~t~~W~~~~~~~~~~~p-----~~~--~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
|+.++....+......+.. ... .-.+.++.-+|+|||.... .+.|.++|+++++
T Consensus 831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~----Nn~Irvid~~~~~ 891 (1057)
T PLN02919 831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN----NSLIRYLDLNKGE 891 (1057)
T ss_pred ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC----CCEEEEEECCCCc
Confidence 9998887765431100000 000 1112234456889998653 3589999998875
No 111
>PRK04922 tolB translocation protein TolB; Provisional
Probab=84.53 E-value=50 Score=33.59 Aligned_cols=182 Identities=9% Similarity=-0.013 Sum_probs=90.2
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
...++++|..+++-+.+...+..-......--+.+|++..... + ..+++++|+.++.-+.+.........
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~----g---~~~Iy~~d~~~g~~~~lt~~~~~~~~--- 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD----G---NPEIYVMDLGSRQLTRLTNHFGIDTE--- 296 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC----C---CceEEEEECCCCCeEECccCCCCccc---
Confidence 4679999999988777765542211111111134565543221 1 25799999998887666432211111
Q ss_pred chhhccccccceeeEEEeCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECC-EEE
Q 011957 276 TAFLADLLKPIATGMSSYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEG-ELY 353 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~-~ly 353 (474)
.. ..-+|+ |++.....+. ...+.+|..+++.+.+.... ...... ...-+| .|+
T Consensus 297 ------------~~-~spDG~~l~f~sd~~g~-----~~iy~~dl~~g~~~~lt~~g------~~~~~~-~~SpDG~~Ia 351 (433)
T PRK04922 297 ------------PT-WAPDGKSIYFTSDRGGR-----PQIYRVAASGGSAERLTFQG------NYNARA-SVSPDGKKIA 351 (433)
T ss_pred ------------eE-ECCCCCEEEEEECCCCC-----ceEEEEECCCCCeEEeecCC------CCccCE-EECCCCCEEE
Confidence 11 222443 4443222211 12366788888887765311 111111 233344 455
Q ss_pred EEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEee
Q 011957 354 ALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 354 v~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
+..+.+ ....++.+|+.+++.+.+.. -+ .. . .-...-+++.+++.....+...+..++.
T Consensus 352 ~~~~~~--~~~~I~v~d~~~g~~~~Lt~-~~-----~~-~-~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 352 MVHGSG--GQYRIAVMDLSTGSVRTLTP-GS-----LD-E-SPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EEECCC--CceeEEEEECCCCCeEECCC-CC-----CC-C-CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 544322 22479999999988877642 11 00 1 1133456666565554433334444444
No 112
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.41 E-value=43 Score=32.82 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=76.2
Q ss_pred eeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEe-C-
Q 011957 221 YSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-R- 294 (474)
Q Consensus 221 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (474)
-|.+... +..+||..= -.+.+.+|+...+. .+....+..+.... | ..++.. +
T Consensus 146 ~H~v~~~pdg~~v~v~dl---------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-P------------Rh~~f~pdg 203 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDL---------GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-P------------RHLAFSPDG 203 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---------TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-E------------EEEEE-TTS
T ss_pred ceeEEECCCCCEEEEEec---------CCCEEEEEEEeCCCceEEEeeccccccCCC-C------------cEEEEcCCc
Confidence 3444444 356777531 13678888887665 55433221111110 0 122332 3
Q ss_pred CEEEEeccCCCCcceeccceEEEcCCCCceEEcCC--CCCCCCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEE
Q 011957 295 GRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV--GMGEGWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYD 370 (474)
Q Consensus 295 ~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~--~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd 370 (474)
..+||.....+. +....|+..+++++.+.. ..+..+.... ..+.++.. +..||+.-. ..+.|.+|+
T Consensus 204 ~~~Yv~~e~s~~-----v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr----~~~sI~vf~ 273 (345)
T PF10282_consen 204 KYAYVVNELSNT-----VSVFDYDPSDGSLTEIQTISTLPEGFTGEN-APAEIAISPDGRFLYVSNR----GSNSISVFD 273 (345)
T ss_dssp SEEEEEETTTTE-----EEEEEEETTTTEEEEEEEEESCETTSCSSS-SEEEEEE-TTSSEEEEEEC----TTTEEEEEE
T ss_pred CEEEEecCCCCc-----EEEEeecccCCceeEEEEeeeccccccccC-CceeEEEecCCCEEEEEec----cCCEEEEEE
Confidence 468997765432 323456655777766433 1211111111 11213333 345777643 245777777
Q ss_pred C--CCCceEEeccCCCC-CCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEe
Q 011957 371 Y--HDDTWKVVVGDVPL-PNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQAD 421 (474)
Q Consensus 371 ~--~~~~W~~v~~~~p~-~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d 421 (474)
. ++++-+.+. .++. +..| |. +.+ .-+|+.++++....+.+.+...|
T Consensus 274 ~d~~~g~l~~~~-~~~~~G~~P--r~-~~~-s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 274 LDPATGTLTLVQ-TVPTGGKFP--RH-FAF-SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ECTTTTTEEEEE-EEEESSSSE--EE-EEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCceEEEE-EEeCCCCCc--cE-EEE-eCCCCEEEEEecCCCeEEEEEEe
Confidence 6 455666653 2332 2222 21 222 33556555566566666666554
No 113
>PRK04043 tolB translocation protein TolB; Provisional
Probab=82.94 E-value=57 Score=33.08 Aligned_cols=150 Identities=7% Similarity=-0.037 Sum_probs=78.0
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
..++|++|..+..++++...+..-....-.--+.+||+..... ....++++|..++..+++..-. ...
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-------g~~~Iy~~dl~~g~~~rlt~~g--~~~--- 323 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL-------GYPNIFMKKLNSGSVEQVVFHG--KNN--- 323 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC-------CCceEEEEECCCCCeEeCccCC--CcC---
Confidence 4689999999999998865443111111112245677765321 1357999999998887664321 111
Q ss_pred chhhccccccceeeEEEeCCEEEEeccCCCCc-ce-eccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEE
Q 011957 276 TAFLADLLKPIATGMSSYRGRLFVPQSLYFWP-FF-VDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELY 353 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~-~~-~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ly 353 (474)
. ...-+|+..++....... +. ......++|++++.++.+..... .... ...-||+..
T Consensus 324 ------------~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~-------~~~p-~~SPDG~~I 382 (419)
T PRK04043 324 ------------S-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV-------NQFP-RFSSDGGSI 382 (419)
T ss_pred ------------c-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC-------cCCe-EECCCCCEE
Confidence 1 122344332222211110 00 00223788999999998876211 1112 344556544
Q ss_pred EEcCCCCCCCceEEEEECCCCceEEe
Q 011957 354 ALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 354 v~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
++-... .....++.++.+.+.=..+
T Consensus 383 ~f~~~~-~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 383 MFIKYL-GNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred EEEEcc-CCcEEEEEEecCCCeeEEe
Confidence 442221 1234688888877543333
No 114
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.71 E-value=47 Score=31.96 Aligned_cols=181 Identities=21% Similarity=0.261 Sum_probs=76.1
Q ss_pred eeEEE-eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEE
Q 011957 175 CSIGA-VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 175 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
+.+.. -++.++++|.. ..+++=.=.-.+|+.+..-... .-..+... ++++++++.. + +-...
T Consensus 107 ~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~-----G----~~~~s 170 (302)
T PF14870_consen 107 FGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSR-----G----NFYSS 170 (302)
T ss_dssp EEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-----S----SEEEE
T ss_pred eEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECc-----c----cEEEE
Confidence 33333 35567776532 3455544455689987542221 12222333 4565555532 1 23346
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEE-Ec---CCCCceEEcC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEV-YD---PDVNSWVEMP 328 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~-yd---~~t~~W~~~~ 328 (474)
.|+....|+........|-. .-...-++.|+++. -||+. +. -...+|.+..
T Consensus 171 ~~~G~~~w~~~~r~~~~riq---------------~~gf~~~~~lw~~~----------~Gg~~~~s~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 171 WDPGQTTWQPHNRNSSRRIQ---------------SMGFSPDGNLWMLA----------RGGQIQFSDDPDDGETWSEPI 225 (302)
T ss_dssp E-TT-SS-EEEE--SSS-EE---------------EEEE-TTS-EEEEE----------TTTEEEEEE-TTEEEEE---B
T ss_pred ecCCCccceEEccCccceeh---------------hceecCCCCEEEEe----------CCcEEEEccCCCCcccccccc
Confidence 78888889977644333322 22223467777754 23332 22 2345688733
Q ss_pred CCCCCCCCccccCcceEE-EECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEE
Q 011957 329 VGMGEGWPVRQAGTKLSI-TVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHV 406 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v 406 (474)
.+. +....+...++ .-++++++.||.. .+++=.-.-++|++....-+. +...+.++. -.++-+|
T Consensus 226 ~~~----~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~S~DgGktW~~~~~~~~~-----~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 226 IPI----KTNGYGILDLAYRPPNEIWAVGGSG-----TLLVSTDGGKTWQKDRVGENV-----PSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp -TT----SS--S-EEEEEESSSS-EEEEESTT------EEEESSTTSS-EE-GGGTTS-----SS---EEEEEETTEEEE
T ss_pred CCc----ccCceeeEEEEecCCCCEEEEeCCc-----cEEEeCCCCccceECccccCC-----CCceEEEEEcCCCceEE
Confidence 211 12222222223 3358899999843 455444456789997531111 112244554 4569999
Q ss_pred EecC
Q 011957 407 ITND 410 (474)
Q Consensus 407 ~GG~ 410 (474)
+|..
T Consensus 292 lG~~ 295 (302)
T PF14870_consen 292 LGQD 295 (302)
T ss_dssp E-ST
T ss_pred ECCC
Confidence 9863
No 115
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.44 E-value=52 Score=32.26 Aligned_cols=68 Identities=22% Similarity=0.125 Sum_probs=38.0
Q ss_pred eCCEEEEEcCcCCCcccceEEEE--eCCCCceeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEe
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRY--DPVLNAWSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~y--d~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
-++.||+..... .....+..| +..+.+.+.+...+......+...+ +..||+.--. ..++.+|+
T Consensus 47 ~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~---------~g~v~v~~ 115 (345)
T PF10282_consen 47 DGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG---------GGSVSVFP 115 (345)
T ss_dssp TSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT---------TTEEEEEE
T ss_pred CCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc---------CCeEEEEE
Confidence 467889886432 123444444 5555678887766633333333343 4567775311 24677787
Q ss_pred CCCC
Q 011957 255 PRTG 258 (474)
Q Consensus 255 ~~t~ 258 (474)
+..+
T Consensus 116 l~~~ 119 (345)
T PF10282_consen 116 LDDD 119 (345)
T ss_dssp ECTT
T ss_pred ccCC
Confidence 7764
No 116
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.64 E-value=75 Score=32.93 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=42.3
Q ss_pred EEEcCCCCc--eEEcCCCCCCCCC--ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEEeccCCCCCCC
Q 011957 315 EVYDPDVNS--WVEMPVGMGEGWP--VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKVVVGDVPLPNF 388 (474)
Q Consensus 315 ~~yd~~t~~--W~~~~~~~~~~~p--~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~v~~~~p~~~~ 388 (474)
.++|..+++ |+.-.......++ .+..+ +..++.++.||+... ...++.+|.++. .|+. + ++.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~-~~~~~~g~~v~~g~~-----dG~l~ald~~tG~~lW~~-~--~~~~-- 437 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWG-GSLATAGNLVFAGAA-----DGYFRAFDATTGKELWKF-R--TPSG-- 437 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccC-cceEecCCeEEEECC-----CCeEEEEECCCCceeeEE-E--CCCC--
Confidence 577877664 8764321100000 01111 114566676666542 358999999887 4774 2 1211
Q ss_pred CCCCCCeEEEeeCCEEEEEe
Q 011957 389 TDSESPYLLAGLLGKLHVIT 408 (474)
Q Consensus 389 ~~~r~~~~~~~~~~~l~v~G 408 (474)
......+...++++||.-
T Consensus 438 --~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 438 --IQATPMTYEVNGKQYVGV 455 (488)
T ss_pred --ceEcCEEEEeCCEEEEEE
Confidence 111123335699999865
No 117
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.54 E-value=57 Score=31.51 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=32.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
+..||+..-. .+.+.+||..++. ...+...+....-|.++.. +..+||..-. .+.+.+||..
T Consensus 91 g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~---------~~~v~v~d~~ 156 (330)
T PRK11028 91 GRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK---------EDRIRLFTLS 156 (330)
T ss_pred CCEEEEEEcC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC---------CCEEEEEEEC
Confidence 4457766421 3567778775431 1122222222223444333 3467665432 3678999987
Q ss_pred CC
Q 011957 257 TG 258 (474)
Q Consensus 257 t~ 258 (474)
++
T Consensus 157 ~~ 158 (330)
T PRK11028 157 DD 158 (330)
T ss_pred CC
Confidence 63
No 118
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.87 E-value=57 Score=31.05 Aligned_cols=175 Identities=12% Similarity=0.160 Sum_probs=88.4
Q ss_pred eecCCCCCC--cceeeEEEECCEEEEEeceecCCC-------C------CccCceEEEEeCCCCceEEc--cCCCccccc
Q 011957 210 SEVSSMSVG--RAYSKIGILNNKLYAVGGVTRGPG-------G------LTPLQSAEVFDPRTGLWSEI--LSMPFSKAQ 272 (474)
Q Consensus 210 ~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~-------~------~~~~~~~~~yd~~t~~W~~~--~~~p~~r~~ 272 (474)
+.+.+.|.. -.+-++..+++.|| |||...... + .+..+.++.||.++++-+.+ ..+..+...
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~W 104 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKW 104 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCcccc
Confidence 445544432 22334455566666 566543211 0 12346799999998874433 122222222
Q ss_pred cccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEE
Q 011957 273 VLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGEL 352 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~l 352 (474)
.+.+.- .-.--++++||+.-+ ++. ...|.+..|..++.=+.+... | ...+ +.+.|...
T Consensus 105 ------aGEVSd---IlYdP~~D~LLlAR~-DGh---~nLGvy~ldr~~g~~~~L~~~-----p-s~KG---~~~~D~a~ 162 (339)
T PF09910_consen 105 ------AGEVSD---ILYDPYEDRLLLARA-DGH---ANLGVYSLDRRTGKAEKLSSN-----P-SLKG---TLVHDYAC 162 (339)
T ss_pred ------ccchhh---eeeCCCcCEEEEEec-CCc---ceeeeEEEcccCCceeeccCC-----C-CcCc---eEeeeeEE
Confidence 000000 011135788888533 221 226778899999988887651 1 1122 44555555
Q ss_pred EEEcCCCCCCCceEEEEECCCCce--EEeccCC-CCCCCCCCCCCeEEEeeCCEEEEEe
Q 011957 353 YALDPSGALDSAKIKVYDYHDDTW--KVVVGDV-PLPNFTDSESPYLLAGLLGKLHVIT 408 (474)
Q Consensus 353 yv~GG~~~~~~~~v~~yd~~~~~W--~~v~~~~-p~~~~~~~r~~~~~~~~~~~l~v~G 408 (474)
|-+ -.-......|.+||+.+++| +...... +.+.....+....++...+++|.|=
T Consensus 163 F~i-~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~ 220 (339)
T PF09910_consen 163 FGI-NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV 220 (339)
T ss_pred Eec-cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE
Confidence 533 11112256899999999999 4332111 1111122334455666777776653
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=51 Score=30.40 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=37.4
Q ss_pred eeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEE
Q 011957 288 TGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIK 367 (474)
Q Consensus 288 ~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~ 367 (474)
.+.+..++++++ +.-+.+.+.|+.-.- ...|..-. +.+--..++.|-|-||. +.+.
T Consensus 226 iAS~SqDg~viI---------------wt~~~e~e~wk~tll---~~f~~~~w-~vSWS~sGn~LaVs~Gd-----Nkvt 281 (299)
T KOG1332|consen 226 IASCSQDGTVII---------------WTKDEEYEPWKKTLL---EEFPDVVW-RVSWSLSGNILAVSGGD-----NKVT 281 (299)
T ss_pred eEEecCCCcEEE---------------EEecCccCccccccc---ccCCcceE-EEEEeccccEEEEecCC-----cEEE
Confidence 444566788777 455667788976321 11121111 11133445555555653 4666
Q ss_pred EEECCCC-ceEEec
Q 011957 368 VYDYHDD-TWKVVV 380 (474)
Q Consensus 368 ~yd~~~~-~W~~v~ 380 (474)
.|-...+ +|.++.
T Consensus 282 lwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 282 LWKENVDGKWEEVG 295 (299)
T ss_pred EEEeCCCCcEEEcc
Confidence 6666554 899874
No 120
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.65 E-value=75 Score=32.29 Aligned_cols=147 Identities=12% Similarity=0.008 Sum_probs=74.8
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPT 276 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 276 (474)
..++++|+.+++.+.+...+..-......--+.+|++....+ ...+++++|..+..-+.+...+....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-------g~~~Iy~~d~~~~~~~~Lt~~~~~~~----- 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-------GNTDIYTMDLRSGTTTRLTDSPAIDT----- 293 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-------CCceEEEEECCCCceEEccCCCCccC-----
Confidence 689999999998887765543222222222234555443221 13578899999888776654321111
Q ss_pred hhhccccccceeeEEEeCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECC-EEEE
Q 011957 277 AFLADLLKPIATGMSSYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEG-ELYA 354 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~-~lyv 354 (474)
.....-+|+ |++.....+. ...+.+|..++..+.+.... ...... ...-+| .|++
T Consensus 294 -----------~~~~spDG~~i~f~s~~~g~-----~~Iy~~d~~g~~~~~lt~~~------~~~~~~-~~SpdG~~ia~ 350 (435)
T PRK05137 294 -----------SPSYSPDGSQIVFESDRSGS-----PQLYVMNADGSNPRRISFGG------GRYSTP-VWSPRGDLIAF 350 (435)
T ss_pred -----------ceeEcCCCCEEEEEECCCCC-----CeEEEEECCCCCeEEeecCC------CcccCe-EECCCCCEEEE
Confidence 111223443 4432211111 12367788777777765311 111111 233344 4444
Q ss_pred EcCCCCCCCceEEEEECCCCceEEec
Q 011957 355 LDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 355 ~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
..... ....++.+|++++..+.+.
T Consensus 351 ~~~~~--~~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 351 TKQGG--GQFSIGVMKPDGSGERILT 374 (435)
T ss_pred EEcCC--CceEEEEEECCCCceEecc
Confidence 43211 1357899999877666553
No 121
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=79.52 E-value=53 Score=30.51 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=92.3
Q ss_pred ccceeEEEeCCEEEEEcCcC--CCcccceEEEEe---CCCCceee--cCCCCC-------CcceeeEEEECCEEEEEece
Q 011957 172 FCGCSIGAVDGCLYVLGGFS--RALAMRNVWRYD---PVLNAWSE--VSSMSV-------GRAYSKIGILNNKLYAVGGV 237 (474)
Q Consensus 172 r~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd---~~t~~W~~--~~~~p~-------~r~~~~~~~~~~~lyv~GG~ 237 (474)
..++++.+++++||.+=-.. ........+.|| ...+.|+. ++..|. .-.-|+.+.+++.-|.+|=.
T Consensus 75 yHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH 154 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYH 154 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEE
T ss_pred eeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEec
Confidence 45667888999998874211 122233445555 35677875 444443 34467788888888877754
Q ss_pred ecCCCCCccCceE-EEEeCCCCceE--------EccC-CCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc
Q 011957 238 TRGPGGLTPLQSA-EVFDPRTGLWS--------EILS-MPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP 307 (474)
Q Consensus 238 ~~~~~~~~~~~~~-~~yd~~t~~W~--------~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~ 307 (474)
+ +...-.++ ..|-+ +.|. .++. +....+. .++-.++|+||+..-....+
T Consensus 155 n----GD~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~~AsE---------------PCvkyY~g~LyLtTRgt~~~ 213 (367)
T PF12217_consen 155 N----GDVSPRELGFLYFS--DAFASPGVFVRRIIPSEYERNASE---------------PCVKYYDGVLYLTTRGTLPT 213 (367)
T ss_dssp E-----SSSS-EEEEEEET--TTTT-TT--EEEE--GGG-TTEEE---------------EEEEEETTEEEEEEEES-TT
T ss_pred c----CCCCcceeeEEEec--ccccCCcceeeeechhhhcccccc---------------chhhhhCCEEEEEEcCcCCC
Confidence 4 22112222 22222 1221 2221 1111111 45557899999964322211
Q ss_pred ceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC--------C------CceE-------
Q 011957 308 FFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL--------D------SAKI------- 366 (474)
Q Consensus 308 ~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~--------~------~~~v------- 366 (474)
..- ....+-+.....|+.+.-+-. . ..... ..+.+++.||+||-.-.. + ....
T Consensus 214 ~~G-S~L~rs~d~G~~w~slrfp~n--v--Hhtnl-PFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv 287 (367)
T PF12217_consen 214 NPG-SSLHRSDDNGQNWSSLRFPNN--V--HHTNL-PFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNV 287 (367)
T ss_dssp S----EEEEESSTTSS-EEEE-TT-------SS----EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEET
T ss_pred CCc-ceeeeecccCCchhhcccccc--c--cccCC-CceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeec
Confidence 100 011566666778998754211 0 11111 268899999999852110 0 0111
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCCCeEE-EeeCCEEE-EEecC
Q 011957 367 KVYDYHDDTWKVVVGDVPLPNFTDSESPYLL-AGLLGKLH-VITND 410 (474)
Q Consensus 367 ~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~-~~~~~~l~-v~GG~ 410 (474)
-.+.++.-+|..|...+-.+..-....+.+. +.-+|-|| +|||+
T Consensus 288 ~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgE 333 (367)
T PF12217_consen 288 SDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGE 333 (367)
T ss_dssp TT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB
T ss_pred ccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCc
Confidence 1235667789888765555544444444444 45566654 57763
No 122
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.44 E-value=73 Score=32.05 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=31.6
Q ss_pred EECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEec
Q 011957 347 TVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVITN 409 (474)
Q Consensus 347 ~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG 409 (474)
.-++.++++|.. +.+..-...-++|+.+...- ..+ -..+.+.. -+++.|++|-
T Consensus 336 ~~d~~~~a~G~~-----G~v~~s~D~G~tW~~~~~~~---~~~--~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 336 RSKKEAWAAGGS-----GILLRSTDGGKSWKRDKGAD---NIA--ANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred cCCCcEEEEECC-----CcEEEeCCCCcceeEccccC---CCC--cceeEEEEcCCCceEEEeC
Confidence 346789998863 35666666777999975211 111 11234553 4478998885
No 123
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=79.03 E-value=53 Score=30.24 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=80.8
Q ss_pred ceeecCCCCC-----CcceeeEE-EECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhcc
Q 011957 208 AWSEVSSMSV-----GRAYSKIG-ILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLAD 281 (474)
Q Consensus 208 ~W~~~~~~p~-----~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ 281 (474)
-|+..+||.. |-.+.-.. --.+.|+.+||- ..++..|.++++-++.-. ..
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD----------~~~y~~dlE~G~i~r~~r-----GH--------- 155 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD----------GVIYQVDLEDGRIQREYR-----GH--------- 155 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC----------eEEEEEEecCCEEEEEEc-----CC---------
Confidence 4877776644 22221111 135889999883 478899999998876521 11
Q ss_pred ccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC-CCCccccCc--ceEEEECCEEEEEc
Q 011957 282 LLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE-GWPVRQAGT--KLSITVEGELYALD 356 (474)
Q Consensus 282 ~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~-~~p~~~~~~--~~~~~~~~~lyv~G 356 (474)
..|.|+++. -++.|+ .|+.++. ..++|.+|.+=.++-.+... ..-++..+. . +...+....|+|
T Consensus 156 --tDYvH~vv~R~~~~qil-sG~EDGt-------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig-ala~~edWlvCG 224 (325)
T KOG0649|consen 156 --TDYVHSVVGRNANGQIL-SGAEDGT-------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG-ALAVNEDWLVCG 224 (325)
T ss_pred --cceeeeeeecccCccee-ecCCCcc-------EEEEeccccceeEEeccccChhhcCcccCceeE-EEeccCceEEec
Confidence 112255554 234443 3555542 25788888776554321221 112222332 3 445555566666
Q ss_pred CCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCC
Q 011957 357 PSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDAN 412 (474)
Q Consensus 357 G~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~ 412 (474)
|- ..+-.|++...+=+.+- ++|. . ...+.+.++.+++||.++
T Consensus 225 gG-----p~lslwhLrsse~t~vf-pipa-------~-v~~v~F~~d~vl~~G~g~ 266 (325)
T KOG0649|consen 225 GG-----PKLSLWHLRSSESTCVF-PIPA-------R-VHLVDFVDDCVLIGGEGN 266 (325)
T ss_pred CC-----CceeEEeccCCCceEEE-eccc-------c-eeEeeeecceEEEecccc
Confidence 52 34556666665555541 2221 1 334555666666666443
No 124
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.01 E-value=49 Score=29.86 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=31.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.++++|+. ...+.+||..+++-...-....... ..+... +++.+++++.+ ..+.+||..++
T Consensus 20 ~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~---------~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSG-----DGTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSSD---------KTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeec-----CcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcCC---------CeEEEEEcCcc
Confidence 3455566653 2467788877664211111111111 122222 34456666642 57889998875
No 125
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=78.89 E-value=59 Score=30.65 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=81.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceee-EEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSK-IGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
.|.|+..|-..- . =++||.++.-+..+.. ..-.-.. ++.-++.+|+..=.. +-+-..|+.+..
T Consensus 158 ~G~lWFt~q~G~---y---GrLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslag---------naiaridp~~~~ 221 (353)
T COG4257 158 WGNLWFTGQIGA---Y---GRLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAG---------NAIARIDPFAGH 221 (353)
T ss_pred CccEEEeecccc---c---eecCcccCceeeeccC-CCCCCcceEECCCCcEEEEeccc---------cceEEcccccCC
Confidence 467888763211 1 1677777765554432 2222223 334478888863221 345566777664
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQ 339 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~ 339 (474)
=+.++. |.+..... + ...+.-.+++++..-.. -..++|||.+..|.+-+-+-.. + +
T Consensus 222 aev~p~-P~~~~~gs---------R---riwsdpig~~wittwg~-------g~l~rfdPs~~sW~eypLPgs~--a--r 277 (353)
T COG4257 222 AEVVPQ-PNALKAGS---------R---RIWSDPIGRAWITTWGT-------GSLHRFDPSVTSWIEYPLPGSK--A--R 277 (353)
T ss_pred cceecC-CCcccccc---------c---ccccCccCcEEEeccCC-------ceeeEeCcccccceeeeCCCCC--C--C
Confidence 444332 32211100 0 11123356666631110 1227999999999987642221 2 2
Q ss_pred cCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 340 AGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 340 ~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.. +.-+--.|++++-.- ..+.|.+||+++.+.+.+.
T Consensus 278 py-s~rVD~~grVW~sea----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 278 PY-SMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cc-eeeeccCCcEEeecc----ccCceeecCcccceEEEec
Confidence 22 113444466776432 3568999999999999985
No 126
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=78.70 E-value=52 Score=30.99 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=63.0
Q ss_pred EEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 178 GAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 178 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
+.-+|.+|+..= .-+-+-+.||.+..=+.++.......+..-+.. -+++++.- .....++.|||
T Consensus 196 atpdGsvwyasl-----agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt---------wg~g~l~rfdP 261 (353)
T COG4257 196 ATPDGSVWYASL-----AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT---------WGTGSLHRFDP 261 (353)
T ss_pred ECCCCcEEEEec-----cccceEEcccccCCcceecCCCcccccccccccCccCcEEEec---------cCCceeeEeCc
Confidence 345788887621 124566778887754444432211111111111 24555541 11357899999
Q ss_pred CCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCC
Q 011957 256 RTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV 329 (474)
Q Consensus 256 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~ 329 (474)
.+.+|.+-+ ||....... .--+--.|++++..-.. -...+||+++.+.+.++.
T Consensus 262 s~~sW~eyp-LPgs~arpy-------------s~rVD~~grVW~sea~a-------gai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 SVTSWIEYP-LPGSKARPY-------------SMRVDRHGRVWLSEADA-------GAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccccceeee-CCCCCCCcc-------------eeeeccCCcEEeecccc-------CceeecCcccceEEEecC
Confidence 999999764 332222200 22233456777621100 122799999999999876
No 127
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.67 E-value=49 Score=36.33 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=24.4
Q ss_pred eeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCC
Q 011957 222 SKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSM 266 (474)
Q Consensus 222 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 266 (474)
.+-++++++||+.... ..+..+|.+|++ |+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~~----------~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH----------NKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECCC----------CeEEEEECCCCcEEEEEcCCC
Confidence 4457789999997542 468888887654 8765443
No 128
>PLN00181 protein SPA1-RELATED; Provisional
Probab=77.51 E-value=1.2e+02 Score=33.58 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=33.5
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCC-CcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSV-GRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+.+.+.|+.+ ..+.+||..+++-.. .+.. ...-.+++.. ++.+++.||.+ ..+.+||..+.
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCC
Confidence 3445555543 467888887764322 1111 1111223332 46777777753 57889998765
Q ss_pred c
Q 011957 259 L 259 (474)
Q Consensus 259 ~ 259 (474)
.
T Consensus 609 ~ 609 (793)
T PLN00181 609 V 609 (793)
T ss_pred c
Confidence 3
No 129
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.48 E-value=5.1 Score=38.82 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=19.6
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCcee
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWS 210 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 210 (474)
-+..+||. +..+..+|-+-|...++--
T Consensus 105 dgk~~~V~----N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 105 DGKFLYVQ----NFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp TSSEEEEE----EESSSEEEEEEETTTTEEE
T ss_pred CCcEEEEE----ccCCCCeEEEEECCCCcee
Confidence 35567776 3456788999999998754
No 130
>PRK03629 tolB translocation protein TolB; Provisional
Probab=77.32 E-value=87 Score=31.79 Aligned_cols=143 Identities=11% Similarity=-0.023 Sum_probs=70.1
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPT 276 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 276 (474)
.+++++|..+.+.+++..-...-... ...-+++.+++.... . ....++.+|+.+..-+.+........
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~---~---g~~~Iy~~d~~~g~~~~lt~~~~~~~----- 334 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQ---A---GRPQVYKVNINGGAPQRITWEGSQNQ----- 334 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCC---C---CCceEEEEECCCCCeEEeecCCCCcc-----
Confidence 46999999998887775432211111 111244433333211 0 12478888988877665532111100
Q ss_pred hhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEc
Q 011957 277 AFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALD 356 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G 356 (474)
.....-+|+..++.+..... .....+|++++.++.+...... . .. ...-||+..++.
T Consensus 335 -----------~~~~SpDG~~Ia~~~~~~g~----~~I~~~dl~~g~~~~Lt~~~~~------~-~p-~~SpDG~~i~~~ 391 (429)
T PRK03629 335 -----------DADVSSDGKFMVMVSSNGGQ----QHIAKQDLATGGVQVLTDTFLD------E-TP-SIAPNGTMVIYS 391 (429)
T ss_pred -----------CEEECCCCCEEEEEEccCCC----ceEEEEECCCCCeEEeCCCCCC------C-Cc-eECCCCCEEEEE
Confidence 11122344433332222111 1236789999998887642111 1 11 345677766665
Q ss_pred CCCCCCCceEEEEECCCCc
Q 011957 357 PSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 357 G~~~~~~~~v~~yd~~~~~ 375 (474)
..... ...++..+.+...
T Consensus 392 s~~~~-~~~l~~~~~~G~~ 409 (429)
T PRK03629 392 SSQGM-GSVLNLVSTDGRF 409 (429)
T ss_pred EcCCC-ceEEEEEECCCCC
Confidence 43221 2356666765443
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=76.28 E-value=74 Score=31.78 Aligned_cols=121 Identities=10% Similarity=0.213 Sum_probs=63.1
Q ss_pred cceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEE
Q 011957 219 RAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRL 297 (474)
Q Consensus 219 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (474)
...++++++ +|-||..|-.+ ..+-+||..+.. .++..|..-... -+...-++-.
T Consensus 348 v~~ts~~fHpDgLifgtgt~d---------~~vkiwdlks~~--~~a~Fpght~~v--------------k~i~FsENGY 402 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPD---------GVVKIWDLKSQT--NVAKFPGHTGPV--------------KAISFSENGY 402 (506)
T ss_pred ceeEEeeEcCCceEEeccCCC---------ceEEEEEcCCcc--ccccCCCCCCce--------------eEEEeccCce
Confidence 334555555 56677666542 568899998876 566655422220 2233333444
Q ss_pred EEeccCCCCcceeccceEEEcCCCCc-eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 298 FVPQSLYFWPFFVDVGGEVYDPDVNS-WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 298 yv~gG~~~~~~~~~~gg~~yd~~t~~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
|+.-+.+. -.+..+|+...+ ...++. +-...-.+...-.-|...+++|. .-.|+.|+..+..|
T Consensus 403 ~Lat~add------~~V~lwDLRKl~n~kt~~l------~~~~~v~s~~fD~SGt~L~~~g~----~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 403 WLATAADD------GSVKLWDLRKLKNFKTIQL------DEKKEVNSLSFDQSGTYLGIAGS----DLQVYICKKKTKSW 466 (506)
T ss_pred EEEEEecC------CeEEEEEehhhcccceeec------cccccceeEEEcCCCCeEEeecc----eeEEEEEecccccc
Confidence 44333221 224677776554 222211 11110111122233667777763 34778888899999
Q ss_pred EEec
Q 011957 377 KVVV 380 (474)
Q Consensus 377 ~~v~ 380 (474)
+++.
T Consensus 467 ~~~~ 470 (506)
T KOG0289|consen 467 TEIK 470 (506)
T ss_pred eeee
Confidence 9986
No 132
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.26 E-value=92 Score=31.50 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=68.4
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-C-CEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-N-NKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
..++.|++.||+++ .+-.||..+.. ..+-.+....---.+..+ + ..|.-+|| +.+-++|..
T Consensus 163 ~~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-----------n~vkVWDl~ 225 (487)
T KOG0310|consen 163 PANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-----------NSVKVWDLT 225 (487)
T ss_pred cCCCeEEEecCCCc-----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-----------CeEEEEEec
Confidence 45678999999875 46677877763 222222211111112223 3 44445555 568888887
Q ss_pred CCceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCC
Q 011957 257 TGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGW 335 (474)
Q Consensus 257 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~ 335 (474)
++.=. +..|-...-.+ .++... ++.-.+.||.++. .-+|| +..|+.+.. +.-
T Consensus 226 ~G~ql-l~~~~~H~KtV--------------TcL~l~s~~~rLlS~sLD~~-------VKVfd--~t~~Kvv~s-~~~-- 278 (487)
T KOG0310|consen 226 TGGQL-LTSMFNHNKTV--------------TCLRLASDSTRLLSGSLDRH-------VKVFD--TTNYKVVHS-WKY-- 278 (487)
T ss_pred CCcee-hhhhhcccceE--------------EEEEeecCCceEeecccccc-------eEEEE--ccceEEEEe-eec--
Confidence 55322 22221110000 222222 3444555665542 26788 456776654 332
Q ss_pred CccccCcceEEEECCEEEEEcCCC
Q 011957 336 PVRQAGTKLSITVEGELYALDPSG 359 (474)
Q Consensus 336 p~~~~~~~~~~~~~~~lyv~GG~~ 359 (474)
|.+... .++.-+++-.++|..+
T Consensus 279 ~~pvLs--iavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 279 PGPVLS--IAVSPDDQTVVIGMSN 300 (487)
T ss_pred ccceee--EEecCCCceEEEeccc
Confidence 333322 2456678888888754
No 133
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=75.55 E-value=81 Score=31.68 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=77.3
Q ss_pred cceEEEEeCCCC-----ceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc---eE-EccCC
Q 011957 196 MRNVWRYDPVLN-----AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL---WS-EILSM 266 (474)
Q Consensus 196 ~~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~---W~-~~~~~ 266 (474)
.++++..|.... .|+.+.+--.. ....+...++.+|+.-..+ .....+..+++.+.. |. .+.+-
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~~------a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTNDD------APNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCCC------CCCcEEEEecccccccccceeEEcCC
Confidence 488999999875 78877542222 2233444589999976521 234577888887765 66 44332
Q ss_pred CccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEE
Q 011957 267 PFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI 346 (474)
Q Consensus 267 p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~ 346 (474)
.....- ..+...++.|++..-.++. .-..+||+. ..|.....+. | ..+.....
T Consensus 324 ~~~~~l---------------~~~~~~~~~Lvl~~~~~~~-----~~l~v~~~~-~~~~~~~~~~----p--~~g~v~~~ 376 (414)
T PF02897_consen 324 DEDVSL---------------EDVSLFKDYLVLSYRENGS-----SRLRVYDLD-DGKESREIPL----P--EAGSVSGV 376 (414)
T ss_dssp SSSEEE---------------EEEEEETTEEEEEEEETTE-----EEEEEEETT--TEEEEEEES----S--SSSEEEEE
T ss_pred CCceeE---------------EEEEEECCEEEEEEEECCc-----cEEEEEECC-CCcEEeeecC----C--cceEEecc
Confidence 211111 4555678888774322211 112678887 2344332211 1 11210011
Q ss_pred E---ECCEEEEE-cCCCCCCCceEEEEECCCCceEEec
Q 011957 347 T---VEGELYAL-DPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 347 ~---~~~~lyv~-GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
. ..+.+++. .+. .....++.||+.+++-+.++
T Consensus 377 ~~~~~~~~~~~~~ss~--~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 377 SGDFDSDELRFSYSSF--TTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ES-TT-SEEEEEEEET--TEEEEEEEEETTTTCEEEEE
T ss_pred CCCCCCCEEEEEEeCC--CCCCEEEEEECCCCCEEEEE
Confidence 1 12344433 332 12458999999999887764
No 134
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.45 E-value=98 Score=31.43 Aligned_cols=180 Identities=11% Similarity=0.007 Sum_probs=89.5
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPT 276 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 276 (474)
..++++|..+++-+.+...+..-......--+.+|++..... + ...++++|.+++..+.+..-+....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~----g---~~~I~~~d~~tg~~~~lt~~~~~~~----- 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----G---SLNLYVMDLASGQIRQVTDGRSNNT----- 290 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC----C---CcEEEEEECCCCCEEEccCCCCCcC-----
Confidence 578999998887666654433211111111234566543321 1 2468999999988777654321111
Q ss_pred hhhccccccceeeEEEeCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE
Q 011957 277 AFLADLLKPIATGMSSYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL 355 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 355 (474)
.....-+|+ |+......+. ...+.+|+.++.-+++.... ...... ...-+|+.+++
T Consensus 291 -----------~~~wSPDG~~I~f~s~~~g~-----~~Iy~~d~~~g~~~~lt~~~------~~~~~~-~~SpDG~~Ia~ 347 (429)
T PRK03629 291 -----------EPTWFPDSQNLAYTSDQAGR-----PQVYKVNINGGAPQRITWEG------SQNQDA-DVSSDGKFMVM 347 (429)
T ss_pred -----------ceEECCCCCEEEEEeCCCCC-----ceEEEEECCCCCeEEeecCC------CCccCE-EECCCCCEEEE
Confidence 111223444 4332221111 12356688777666664311 111111 23345544444
Q ss_pred -cCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEe
Q 011957 356 -DPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQAD 421 (474)
Q Consensus 356 -GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d 421 (474)
+..+ ....++.+|+++++++.+... ... ......-+|+.+++.+..+....+...+
T Consensus 348 ~~~~~--g~~~I~~~dl~~g~~~~Lt~~-----~~~---~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 348 VSSNG--GQQHIAKQDLATGGVQVLTDT-----FLD---ETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred EEccC--CCceEEEEECCCCCeEEeCCC-----CCC---CCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3322 134799999999998887521 000 1123346777777776544433333333
No 135
>PRK02889 tolB translocation protein TolB; Provisional
Probab=73.07 E-value=1.1e+02 Score=30.98 Aligned_cols=180 Identities=9% Similarity=-0.026 Sum_probs=86.1
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEEC-CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILN-NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
..++++|..+.+=+.+...+..-. .....-+ .+|++....+ + ...++.+|..+...+.+..-.. ...
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~----g---~~~Iy~~d~~~~~~~~lt~~~~-~~~--- 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRD----G---NSQIYTVNADGSGLRRLTQSSG-IDT--- 287 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccC----C---CceEEEEECCCCCcEECCCCCC-CCc---
Confidence 579999998887555544332111 1111223 4555543321 1 3578888988777666543211 111
Q ss_pred chhhccccccceeeEEEeCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCE-EE
Q 011957 276 TAFLADLLKPIATGMSSYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGE-LY 353 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-ly 353 (474)
.....-+|+ |++.....+. ...+.+|..++..+.+.... ...... ...-+|+ |+
T Consensus 288 ------------~~~wSpDG~~l~f~s~~~g~-----~~Iy~~~~~~g~~~~lt~~g------~~~~~~-~~SpDG~~Ia 343 (427)
T PRK02889 288 ------------EPFFSPDGRSIYFTSDRGGA-----PQIYRMPASGGAAQRVTFTG------SYNTSP-RISPDGKLLA 343 (427)
T ss_pred ------------CeEEcCCCCEEEEEecCCCC-----cEEEEEECCCCceEEEecCC------CCcCce-EECCCCCEEE
Confidence 111233444 4443221111 12256677777776664311 111111 2333454 44
Q ss_pred EEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEee
Q 011957 354 ALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 354 v~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
.....+. ...|+.+|+.+++.+.+... . .. ..-...-+++.+++.....+...+..+++
T Consensus 344 ~~s~~~g--~~~I~v~d~~~g~~~~lt~~-~-----~~--~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 344 YISRVGG--AFKLYVQDLATGQVTALTDT-T-----RD--ESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEccCC--cEEEEEEECCCCCeEEccCC-C-----Cc--cCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 4333221 23799999998887776421 0 00 11233456766666664444433444443
No 136
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=72.22 E-value=82 Score=29.11 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=96.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeC----CCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDP----VLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~----~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++++|++.+.. ...+.-|.. ....|...=.+|.+-.+.+-++++|.+|.-.+. ...+-+||..
T Consensus 30 ~~r~~~~~~~~----~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~---------t~~ivky~l~ 96 (249)
T KOG3545|consen 30 DDRIYVMNYFD----GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG---------TRNIIKYDLE 96 (249)
T ss_pred cCceEEecccc----CceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC---------CcceEEEEee
Confidence 67899984443 244555544 233455555677777888888999998886642 3678899998
Q ss_pred CCc---eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCC----CCceEEcCC
Q 011957 257 TGL---WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPD----VNSWVEMPV 329 (474)
Q Consensus 257 t~~---W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~----t~~W~~~~~ 329 (474)
+.. |..++.+...-.... ..-+..- .-.++-..-++++--....... +-....|+. ..+|..--
T Consensus 97 ~~~~~~~~~lp~a~y~~~~~y--~~~g~sd----iD~avDE~GLWviYat~~~~g~--iv~skLdp~tl~~e~tW~T~~- 167 (249)
T KOG3545|consen 97 TRTVAGSAALPYAGYHNPSPY--YWGGHSD----IDLAVDENGLWVIYATPENAGT--IVLSKLDPETLEVERTWNTTL- 167 (249)
T ss_pred cceeeeeeeccccccCCCccc--ccCCCcc----ccceecccceeEEecccccCCc--EEeeccCHHHhheeeeecccc-
Confidence 743 555543321111000 0000000 1223333334443111111100 101355653 34564322
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEE---eeCCEEEE
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLA---GLLGKLHV 406 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~---~~~~~l~v 406 (474)
+....+- +.++=|.||++-........--+.||..+++=..+ .+|.+ .+-...++. ..+.+||+
T Consensus 168 ------~k~~~~~--aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~--~ipf~---N~y~~~~~idYNP~D~~LY~ 234 (249)
T KOG3545|consen 168 ------PKRSAGN--AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERI--DLPFP---NPYSYATMIDYNPRDRRLYA 234 (249)
T ss_pred ------CCCCcCc--eEEEeeeeEEEeccccCCceEEEEEEcCCCceecc--ccccc---chhhhhhccCCCcccceeeE
Confidence 1222222 55666789998765443333337999998875443 34433 222223333 23678888
Q ss_pred Ee
Q 011957 407 IT 408 (474)
Q Consensus 407 ~G 408 (474)
.-
T Consensus 235 wd 236 (249)
T KOG3545|consen 235 WD 236 (249)
T ss_pred ec
Confidence 64
No 137
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=71.73 E-value=77 Score=28.55 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCc-ceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGR-AYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++..+++++. ...+.+||..+.+-... +.... .-.++... ++++++.++.+ ..+.+||..+.
T Consensus 62 ~~~~l~~~~~-----~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSS-----DKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD---------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcC-----CCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC---------CeEEEEECCCc
Confidence 3334555553 35688888877532211 11111 11122222 34666666532 57889998754
Q ss_pred c
Q 011957 259 L 259 (474)
Q Consensus 259 ~ 259 (474)
+
T Consensus 126 ~ 126 (289)
T cd00200 126 K 126 (289)
T ss_pred E
Confidence 4
No 138
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.31 E-value=1.9e+02 Score=32.00 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=39.5
Q ss_pred EEEeCCEEEEEcCcC-C----CcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCce
Q 011957 177 IGAVDGCLYVLGGFS-R----ALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQS 249 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~-~----~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 249 (474)
-++.++.||+ |+.. + ......+..||..|.+ |+.-..-|... .....+..|..||-+ .-.
T Consensus 312 P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~----~~~~~g~~~~~gg~n--------~W~ 378 (764)
T TIGR03074 312 PLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPT----APPAPGETYTRNTPN--------SWS 378 (764)
T ss_pred CEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcc----cCCCCCCEeccCCCC--------ccC
Confidence 3556787776 4321 1 1235678999999986 76532111110 011256677766532 234
Q ss_pred EEEEeCCCCce
Q 011957 250 AEVFDPRTGLW 260 (474)
Q Consensus 250 ~~~yd~~t~~W 260 (474)
...||++++.-
T Consensus 379 ~~s~D~~~glv 389 (764)
T TIGR03074 379 VASYDEKLGLV 389 (764)
T ss_pred ceEEcCCCCeE
Confidence 56788888763
No 139
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.86 E-value=1.8e+02 Score=28.64 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=83.4
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEe
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
.+..++++|+... ...++.+|+.+.+ |+....--..........-+|+||+-... ..+++||
T Consensus 64 ~~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~----------g~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD----------GKLYALD 127 (370)
T ss_pred cEeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc----------ceEEEEE
Confidence 3667899998611 1278999999987 86543210001111112227887764431 2788999
Q ss_pred CCC--CceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC--ceEEcCCC
Q 011957 255 PRT--GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN--SWVEMPVG 330 (474)
Q Consensus 255 ~~t--~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~--~W~~~~~~ 330 (474)
..+ ..|+.-.+.. ++.. ...+..++.+|+... + -...++|..++ .|+.-...
T Consensus 128 ~~~G~~~W~~~~~~~-~~~~---------------~~~v~~~~~v~~~s~-~-------g~~~al~~~tG~~~W~~~~~~ 183 (370)
T COG1520 128 ASTGTLVWSRNVGGS-PYYA---------------SPPVVGDGTVYVGTD-D-------GHLYALNADTGTLKWTYETPA 183 (370)
T ss_pred CCCCcEEEEEecCCC-eEEe---------------cCcEEcCcEEEEecC-C-------CeEEEEEccCCcEEEEEecCC
Confidence 854 4587554331 2222 345666788887420 0 11255666644 58853321
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEE
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKV 378 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~ 378 (474)
. .+....+. .+..++.+|+-... . ...++.+|++++ .|+.
T Consensus 184 ~---~~~~~~~~--~~~~~~~vy~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 184 P---LSLSIYGS--PAIASGTVYVGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred c---cccccccC--ceeecceEEEecCC--C-cceEEEEEccCCcEeeee
Confidence 0 12222222 23667777776332 2 347999999766 5875
No 140
>PRK02889 tolB translocation protein TolB; Provisional
Probab=59.62 E-value=2e+02 Score=29.07 Aligned_cols=148 Identities=13% Similarity=-0.055 Sum_probs=69.6
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
...+++.|.....-+.+..-...-.... ..-+++.+++.... + ....++++|..+++=+.+...+....
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~-wSPDG~~la~~s~~---~---~~~~I~~~dl~~g~~~~l~~~~g~~~---- 243 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPA-WSPDGTKLAYVSFE---S---KKPVVYVHDLATGRRRVVANFKGSNS---- 243 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccce-EcCCCCEEEEEEcc---C---CCcEEEEEECCCCCEEEeecCCCCcc----
Confidence 4678888876554444432222111111 11244433333321 1 12568999998876555543321111
Q ss_pred chhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCE-EE
Q 011957 276 TAFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGE-LY 353 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-ly 353 (474)
.....-+| +|++....++. ...+.+|..++..+++.... ...... ...-+|+ |+
T Consensus 244 ------------~~~~SPDG~~la~~~~~~g~-----~~Iy~~d~~~~~~~~lt~~~------~~~~~~-~wSpDG~~l~ 299 (427)
T PRK02889 244 ------------APAWSPDGRTLAVALSRDGN-----SQIYTVNADGSGLRRLTQSS------GIDTEP-FFSPDGRSIY 299 (427)
T ss_pred ------------ceEECCCCCEEEEEEccCCC-----ceEEEEECCCCCcEECCCCC------CCCcCe-EEcCCCCEEE
Confidence 11122344 45443322221 22367777777766664311 111111 2334554 54
Q ss_pred EEcCCCCCCCceEEEEECCCCceEEec
Q 011957 354 ALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 354 v~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
+..... ....++.+|..+...+.+.
T Consensus 300 f~s~~~--g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 300 FTSDRG--GAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEecCC--CCcEEEEEECCCCceEEEe
Confidence 443221 2347888998888777764
No 141
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=58.43 E-value=1.9e+02 Score=28.34 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=71.2
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP 307 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~ 307 (474)
+..+.+.||.+ +..++++..++.|- ..++.....+ ......++|.+.+.|++++.-
T Consensus 75 ~~~l~aTGGgD---------D~AflW~~~~ge~~--~eltgHKDSV-------------t~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 75 NNNLVATGGGD---------DLAFLWDISTGEFA--GELTGHKDSV-------------TCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred CCceEEecCCC---------ceEEEEEccCCcce--eEecCCCCce-------------EEEEEccCceEEEecCCCccE
Confidence 67788888864 56888999888854 2233333331 134456788999988877642
Q ss_pred ceeccceEEEcC--CCCceEEcCCCCCC-CCCccccCcceEEE-ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCC
Q 011957 308 FFVDVGGEVYDP--DVNSWVEMPVGMGE-GWPVRQAGTKLSIT-VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDV 383 (474)
Q Consensus 308 ~~~~~gg~~yd~--~t~~W~~~~~~~~~-~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~ 383 (474)
.+++. ...+|..... +.. .| +.- -...|+++|- ....+|+|....+.=.++-
T Consensus 131 -------~v~~~stg~~~~~~~~e-~~dieW---------l~WHp~a~illAG~----~DGsvWmw~ip~~~~~kv~--- 186 (399)
T KOG0296|consen 131 -------LVFKVSTGGEQWKLDQE-VEDIEW---------LKWHPRAHILLAGS----TDGSVWMWQIPSQALCKVM--- 186 (399)
T ss_pred -------EEEEcccCceEEEeecc-cCceEE---------EEecccccEEEeec----CCCcEEEEECCCcceeeEe---
Confidence 34443 3445766432 211 01 011 1244666664 3468999998876433432
Q ss_pred CCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 384 PLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 384 p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
+ -+..+..++-..-+||..+.|-
T Consensus 187 ~---Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 187 S---GHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred c---CCCCCcccccccCCCceEEEEe
Confidence 1 1222333444445566555554
No 142
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=58.26 E-value=2e+02 Score=28.46 Aligned_cols=29 Identities=14% Similarity=-0.049 Sum_probs=19.8
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCceee
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSE 211 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 211 (474)
.-+..|||. +....+.+-+.|..+++-..
T Consensus 114 ~dgk~l~V~----n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 114 PDNKTLLFY----QFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCEEEEe----cCCCCCEEEEEECCCCcEEE
Confidence 334568876 23346889999999987544
No 143
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=56.86 E-value=2.2e+02 Score=28.54 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=44.5
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc---ee-ecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEE
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA---WS-EVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~-~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
.+...++.+|+.-. .+.....+..+++.... |. .+.+-.....--.+...++.|++.-=.+ ....+.
T Consensus 282 ~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-------~~~~l~ 352 (414)
T PF02897_consen 282 YVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-------GSSRLR 352 (414)
T ss_dssp EEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-------TEEEEE
T ss_pred EEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-------CccEEE
Confidence 34445888998765 23335688889888765 66 4444333334455666788888765432 357899
Q ss_pred EEeCC
Q 011957 252 VFDPR 256 (474)
Q Consensus 252 ~yd~~ 256 (474)
+||+.
T Consensus 353 v~~~~ 357 (414)
T PF02897_consen 353 VYDLD 357 (414)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99998
No 144
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=56.61 E-value=10 Score=37.68 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCc
Q 011957 42 LIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSS 80 (474)
Q Consensus 42 ~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~ 80 (474)
+.-+||.|+..++++.|...++.+.+.+|+-|+.+..+.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 444799999999999999999999999999999987554
No 145
>PLN00181 protein SPA1-RELATED; Provisional
Probab=55.17 E-value=3.3e+02 Score=30.17 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCce-eecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAW-SEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.||.+ ..+.+||..+..- ..+. . .....++.. ++++++.|+.+ ..+.+||..
T Consensus 587 ~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~---~-~~~v~~v~~~~~~g~~latgs~d---------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDD-----GSVKLWSINQGVSIGTIK---T-KANICCVQFPSESGRSLAFGSAD---------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCcEEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCC---------CeEEEEECC
Confidence 56677777754 4578888876542 1111 1 111112222 46777777753 578999987
Q ss_pred CC
Q 011957 257 TG 258 (474)
Q Consensus 257 t~ 258 (474)
+.
T Consensus 649 ~~ 650 (793)
T PLN00181 649 NP 650 (793)
T ss_pred CC
Confidence 54
No 146
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=52.33 E-value=2.4e+02 Score=27.79 Aligned_cols=77 Identities=18% Similarity=0.047 Sum_probs=45.3
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceee-EEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSK-IGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
..+||.-...... .+.+.++|..+.+ .+...+.+...+. +..-+..|||.-.+-...........+.+||+++.+=
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~--v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGR--VLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCE--EEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4578875432222 3889999988855 3333333333333 2333578999877422111223457899999999875
Q ss_pred E
Q 011957 261 S 261 (474)
Q Consensus 261 ~ 261 (474)
.
T Consensus 90 ~ 90 (352)
T TIGR02658 90 I 90 (352)
T ss_pred E
Confidence 5
No 147
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.56 E-value=2.4e+02 Score=27.49 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=75.1
Q ss_pred CceEEEEeCCCCceEEccCCC-ccccccccchhhccccccceeeEEEeCCE-EEEeccCCCCcceeccceEEEcCCCCce
Q 011957 247 LQSAEVFDPRTGLWSEILSMP-FSKAQVLPTAFLADLLKPIATGMSSYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
.+.+..|+...+.-+...+.. .|-++.- |-+.--+++ .|++...++. +..+.||+..++.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-------------Hi~FHpn~k~aY~v~EL~st-----V~v~~y~~~~g~~ 227 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPR-------------HIVFHPNGKYAYLVNELNST-----VDVLEYNPAVGKF 227 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcc-------------eEEEcCCCcEEEEEeccCCE-----EEEEEEcCCCceE
Confidence 467888888876655443221 1111110 222222444 4887766543 4448899988998
Q ss_pred EEcCCC--CCCCCCccccCcceEEEECCE-EEEEcCCCCCCCceEEEE--ECCCCceEEeccCCCCCCCCCCCCCeEEEe
Q 011957 325 VEMPVG--MGEGWPVRQAGTKLSITVEGE-LYALDPSGALDSAKIKVY--DYHDDTWKVVVGDVPLPNFTDSESPYLLAG 399 (474)
Q Consensus 325 ~~~~~~--~~~~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~y--d~~~~~W~~v~~~~p~~~~~~~r~~~~~~~ 399 (474)
+++... ++........+....+..+|+ ||+.-- ..+.|.+| |+.+++-..+....-.+.. +|. + ...
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR----g~dsI~~f~V~~~~g~L~~~~~~~teg~~--PR~-F-~i~ 299 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR----GHDSIAVFSVDPDGGKLELVGITPTEGQF--PRD-F-NIN 299 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecC----CCCeEEEEEEcCCCCEEEEEEEeccCCcC--Ccc-c-eeC
Confidence 887652 333333333332212333444 555532 12355555 5555554433211111222 333 3 344
Q ss_pred eCCEEEEEecCCCCceeEEEEe
Q 011957 400 LLGKLHVITNDANHNIAVLQAD 421 (474)
Q Consensus 400 ~~~~l~v~GG~~~~~~~~~~~d 421 (474)
.+++++|.-+...+++.+...|
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEc
Confidence 5667777777677777766655
No 148
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=51.22 E-value=2.7e+02 Score=28.00 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=37.4
Q ss_pred eeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC---CCCcceeeEEEE-CCEEEEEeceecCCCCCccCceE
Q 011957 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM---SVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSA 250 (474)
Q Consensus 175 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~ 250 (474)
..+...++.+|++|-. ..++.=+=.-.+|+.++.. |.. ......+ ++.++++|.. ..+
T Consensus 140 ~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----------G~v 201 (398)
T PLN00033 140 NSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----------GAI 201 (398)
T ss_pred eeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc----------ceE
Confidence 3444457788888631 1233322234679987532 322 2233334 3567777743 234
Q ss_pred EEEeCCCCceEEc
Q 011957 251 EVFDPRTGLWSEI 263 (474)
Q Consensus 251 ~~yd~~t~~W~~~ 263 (474)
++=+-.-.+|+.+
T Consensus 202 ~~S~D~G~tW~~~ 214 (398)
T PLN00033 202 YVTSNAGRNWKAA 214 (398)
T ss_pred EEECCCCCCceEc
Confidence 4444445689976
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.98 E-value=2.8e+02 Score=28.06 Aligned_cols=61 Identities=16% Similarity=0.007 Sum_probs=33.6
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCE-EEEEeceecCCCCCccCceEEEEeCCCCceEEccC
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNK-LYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILS 265 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 265 (474)
..++++|..+.+-+.+...+.. .......-+++ |++....+ + ...++.+|..++..+.+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~----g---~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKD----G---VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecC----C---cEEEEEEECCCCCeEeecc
Confidence 5789999988776666544321 11111122444 44433221 1 1358888998887766543
No 150
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=50.37 E-value=2.7e+02 Score=27.71 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=48.2
Q ss_pred ceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCC-----CCCC--cceeeEEEECCEEEEEeceecCCCC---
Q 011957 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSS-----MSVG--RAYSKIGILNNKLYAVGGVTRGPGG--- 243 (474)
Q Consensus 174 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-----~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~--- 243 (474)
.--++.++|++|++.- ...++.+|..- +=.++.+ +... +.....+...|+|+++..+......
T Consensus 202 ~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~ 274 (373)
T PLN03215 202 FSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRK 274 (373)
T ss_pred eeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccc
Confidence 3456788999999832 24566666321 1112221 1111 1223456677899999885321100
Q ss_pred -----CccCceE--EEEeCCCCceEEccCCCc
Q 011957 244 -----LTPLQSA--EVFDPRTGLWSEILSMPF 268 (474)
Q Consensus 244 -----~~~~~~~--~~yd~~t~~W~~~~~~p~ 268 (474)
......+ +..|.+..+|.++..+..
T Consensus 275 ~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 275 ADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred cccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 0112334 445888899999988753
No 151
>PF13013 F-box-like_2: F-box-like domain
Probab=50.22 E-value=19 Score=28.75 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHhhhccCccchhhHHHhhH
Q 011957 43 IPSLPDEISLQILARIPRIYYLNVKLVSR 71 (474)
Q Consensus 43 ~~~LPddl~~~il~rlp~~~~~~~~~Vck 71 (474)
+..||+||+..|+..-....+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999988888877776666
No 152
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=49.73 E-value=1.7e+02 Score=25.08 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=45.5
Q ss_pred EEeCCEEEEeccCCCCcceeccceEEEcCCCCce-EEcCCCCCCCCCccccCcceE-EEECCEEEEEcCCCCCCCceEEE
Q 011957 291 SSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW-VEMPVGMGEGWPVRQAGTKLS-ITVEGELYALDPSGALDSAKIKV 368 (474)
Q Consensus 291 ~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W-~~~~~~~~~~~p~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~v~~ 368 (474)
+.++|.+|-+.......... -...||..+.+. ..++.|... . ........ ++.+++|-++--......-+||+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~--~IlsFDl~~E~F~~~~~lP~~~--~-~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKD--FILSFDLSTEKFGRSLPLPFCN--D-DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCCce--EEEEEeccccccCCEECCCCcc--C-ccCCEEEEEEecCCEEEEEEeccCCccEEEEE
Confidence 45677777655433322110 137999999999 666652221 1 01111113 34477888774322222357777
Q ss_pred EEC---CCCceEEe
Q 011957 369 YDY---HDDTWKVV 379 (474)
Q Consensus 369 yd~---~~~~W~~v 379 (474)
-+- ....|+++
T Consensus 77 m~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 77 MKKYGYGKESWTKL 90 (164)
T ss_pred EeeeccCcceEEEE
Confidence 662 36789997
No 153
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.36 E-value=32 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=17.2
Q ss_pred EEEECCEEEEEcCCCCCCCceEEEEECCC
Q 011957 345 SITVEGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 345 ~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
.++.++.+|+.+. .+.++++|+++
T Consensus 17 ~~v~~g~vyv~~~-----dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG-----DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T-----TSEEEEEETT-
T ss_pred CEEECCEEEEEcC-----CCEEEEEeCCC
Confidence 5778899998875 46899999874
No 154
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.16 E-value=3.8e+02 Score=29.10 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=74.8
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
+.++.+|+-.+++.-...+-...|.......-+|.+.+.|+.+ ..+-+||..+.--...- ..+-.+
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD---------gKVKvWn~~SgfC~vTF--teHts~--- 394 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED---------GKVKVWNTQSGFCFVTF--TEHTSG--- 394 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC---------CcEEEEeccCceEEEEe--ccCCCc---
Confidence 4566666655555433333333444333334478899999864 57888888775433211 111222
Q ss_pred chhhccccccceeeE--EEeCCEEEEeccCCCCcceeccceEEEcCCCC-ceEEcCCCCCCCCCccccCcceEEEEC--C
Q 011957 276 TAFLADLLKPIATGM--SSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN-SWVEMPVGMGEGWPVRQAGTKLSITVE--G 350 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~--~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-~W~~~~~~~~~~~p~~~~~~~~~~~~~--~ 350 (474)
+++ ....++..+....++.. -++|...- ..+.... |.+.... ++.+| |
T Consensus 395 ------------Vt~v~f~~~g~~llssSLDGtV-------RAwDlkRYrNfRTft~------P~p~Qfs--cvavD~sG 447 (893)
T KOG0291|consen 395 ------------VTAVQFTARGNVLLSSSLDGTV-------RAWDLKRYRNFRTFTS------PEPIQFS--CVAVDPSG 447 (893)
T ss_pred ------------eEEEEEEecCCEEEEeecCCeE-------EeeeecccceeeeecC------CCceeee--EEEEcCCC
Confidence 111 22355555544444322 34554432 2444433 3333322 45555 8
Q ss_pred EEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 351 ELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 351 ~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.|.+.|+.+. -.|++++.+|++=-.+
T Consensus 448 elV~AG~~d~---F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 448 ELVCAGAQDS---FEIFVWSVQTGQLLDI 473 (893)
T ss_pred CEEEeeccce---EEEEEEEeecCeeeeh
Confidence 9999988643 4789999999876554
No 155
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=45.20 E-value=2.8e+02 Score=26.50 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=67.7
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPT 276 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~ 276 (474)
..+-.||..++.-+. .+.....--.++..+..=.+.||.+ ..+-.||..+..=..+..--.+..
T Consensus 35 gslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d---------g~vr~~Dln~~~~~~igth~~~i~----- 98 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD---------GQVRRYDLNTGNEDQIGTHDEGIR----- 98 (323)
T ss_pred CcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC---------ceEEEEEecCCcceeeccCCCceE-----
Confidence 457788888873222 1111111234555566666677764 578899999887666654322221
Q ss_pred hhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE
Q 011957 277 AFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL 355 (474)
Q Consensus 277 ~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~ 355 (474)
++.. ......|.||.+. .....|+... ......+ -+. ..+ +..+.+..+|+
T Consensus 99 ------------ci~~~~~~~~vIsgsWD~-------~ik~wD~R~~----~~~~~~d-~~k-kVy---~~~v~g~~LvV 150 (323)
T KOG1036|consen 99 ------------CIEYSYEVGCVISGSWDK-------TIKFWDPRNK----VVVGTFD-QGK-KVY---CMDVSGNRLVV 150 (323)
T ss_pred ------------EEEeeccCCeEEEcccCc-------cEEEEecccc----ccccccc-cCc-eEE---EEeccCCEEEE
Confidence 1111 2233345566553 2356666541 1110000 011 222 45556666677
Q ss_pred cCCCCCCCceEEEEECCCC
Q 011957 356 DPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 356 GG~~~~~~~~v~~yd~~~~ 374 (474)
|+. ...+.+||+.+.
T Consensus 151 g~~----~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 151 GTS----DRKVLIYDLRNL 165 (323)
T ss_pred eec----CceEEEEEcccc
Confidence 663 368999998765
No 156
>PTZ00420 coronin; Provisional
Probab=45.06 E-value=4.1e+02 Score=28.24 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=15.9
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCC
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
++..++.+|.+....+.|..||+.+
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCC
Confidence 4455666565443445799999874
No 157
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=42.68 E-value=2.2e+02 Score=29.76 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=46.2
Q ss_pred CCccceeEEEe--CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEEC--CEEEEEeceecCCCCCc
Q 011957 170 MGFCGCSIGAV--DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILN--NKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 170 ~pr~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~ 245 (474)
+|+.+.-++.. .-.||+.|- ..+|+++|+..++|-. |+...-....++.++ ..|+++||..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~------- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED------- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccc--ccccccccceeeeecCccceEEecccC-------
Confidence 45555554433 456888763 3689999999998843 332222223334443 6788888854
Q ss_pred cCceEEEEeCCCCc
Q 011957 246 PLQSAEVFDPRTGL 259 (474)
Q Consensus 246 ~~~~~~~yd~~t~~ 259 (474)
..|+.+|+.+.+
T Consensus 197 --g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 --GVVEFWDPRDKS 208 (703)
T ss_pred --ceEEEecchhhh
Confidence 578999997654
No 158
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=42.19 E-value=3.7e+02 Score=26.89 Aligned_cols=242 Identities=16% Similarity=0.047 Sum_probs=99.6
Q ss_pred hcCCCccEEEEEEeecCCceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeecccccccccc
Q 011957 88 ELGTTEEWLYILTKVEDDKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDAL 167 (474)
Q Consensus 88 ~~~~~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (474)
.....+..|++ .+...+...++..|..+++=.+|...+..
T Consensus 42 ~ft~dG~kllF-~s~~dg~~nly~lDL~t~~i~QLTdg~g~--------------------------------------- 81 (386)
T PF14583_consen 42 CFTDDGRKLLF-ASDFDGNRNLYLLDLATGEITQLTDGPGD--------------------------------------- 81 (386)
T ss_dssp -B-TTS-EEEE-EE-TTSS-EEEEEETTT-EEEE---SS-B---------------------------------------
T ss_pred CcCCCCCEEEE-EeccCCCcceEEEEcccCEEEECccCCCC---------------------------------------
Confidence 33333444444 44444556789999999988888765532
Q ss_pred CCCCccceeEEEeCCEE-EEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEEC--CEEEEEeceecCCCC-
Q 011957 168 DRMGFCGCSIGAVDGCL-YVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILN--NKLYAVGGVTRGPGG- 243 (474)
Q Consensus 168 ~p~pr~~~~~~~~~~~l-yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~- 243 (474)
...+-.++.-+..| |+-.+ ..++..|+.|.+=+.+-..|..-.+....+.+ +.. ++|=.......
T Consensus 82 ---~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~ 150 (386)
T PF14583_consen 82 ---NTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWK 150 (386)
T ss_dssp ----TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG--
T ss_pred ---CccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhcc
Confidence 01222233335565 44433 57889999998866666666554443333332 333 22221111000
Q ss_pred -------------CccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeE-EEeCCEEEEeccCCCCcce
Q 011957 244 -------------LTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGM-SSYRGRLFVPQSLYFWPFF 309 (474)
Q Consensus 244 -------------~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~gG~~~~~~~ 309 (474)
..+...+..-|+.+++.+.+-.-..=. + |-- ...+..+.+|+-...+...
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl-g---------------H~~fsP~dp~li~fCHEGpw~~V 214 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL-G---------------HVQFSPTDPTLIMFCHEGPWDLV 214 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E-E---------------EEEEETTEEEEEEEEE-S-TTTS
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc-c---------------CcccCCCCCCEEEEeccCCccee
Confidence 123456777888888877653211000 0 111 1123333333221112111
Q ss_pred eccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCE-EEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCC
Q 011957 310 VDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNF 388 (474)
Q Consensus 310 ~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~ 388 (474)
. ...+.-|........+...+ +.-..+|- .-..+|. |+..+........-|..||+++..=+.+. .+|
T Consensus 215 d-~RiW~i~~dg~~~~~v~~~~----~~e~~gHE-fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-~~p---- 283 (386)
T PF14583_consen 215 D-QRIWTINTDGSNVKKVHRRM----EGESVGHE-FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM-EMP---- 283 (386)
T ss_dssp S--SEEEEETTS---EESS-------TTEEEEEE-EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE-EE-----
T ss_pred c-eEEEEEEcCCCcceeeecCC----CCcccccc-cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE-eCC----
Confidence 1 12255666555555554322 33444554 2333444 43333322233457889999987533332 222
Q ss_pred CCCCCCeEEEeeCCEEEEEecC
Q 011957 389 TDSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 389 ~~~r~~~~~~~~~~~l~v~GG~ 410 (474)
...|-....+++|+|--|.
T Consensus 284 ---~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 284 ---WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ---SEEEEEE-TTSSEEEEEE-
T ss_pred ---ceeeeEEcCCCCEEEecCC
Confidence 2347777888888886554
No 159
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=41.82 E-value=3.5e+02 Score=26.60 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=59.7
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCC--ceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLN--AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
.+|+||+-.. ++ .+++||..+. .|+.--+.. ++..-..+..++.+|+.-. ...+.++|..+
T Consensus 110 ~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~----------~g~~~al~~~t 172 (370)
T COG1520 110 SDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD----------DGHLYALNADT 172 (370)
T ss_pred eCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEecC----------CCeEEEEEccC
Confidence 3788876543 22 7899999654 487643332 3444445555677776531 24677788775
Q ss_pred C--ceEEccCCC-ccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc--eEE
Q 011957 258 G--LWSEILSMP-FSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS--WVE 326 (474)
Q Consensus 258 ~--~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~--W~~ 326 (474)
. .|+.-.+.+ ..+.. ...+..++.+|+-... . +-....+|+++++ |+.
T Consensus 173 G~~~W~~~~~~~~~~~~~---------------~~~~~~~~~vy~~~~~-~-----~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 173 GTLKWTYETPAPLSLSIY---------------GSPAIASGTVYVGSDG-Y-----DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEEEEecCCccccccc---------------cCceeecceEEEecCC-C-----cceEEEEEccCCcEeeee
Confidence 4 487443321 11111 2223567788874321 0 0123678887664 875
No 160
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.64 E-value=4.2e+02 Score=27.12 Aligned_cols=66 Identities=18% Similarity=0.079 Sum_probs=39.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
.+.+++.|+.+ ..+.++|..+.+-...=..........+..-++.+++.+.++ ..+.+||..++.=
T Consensus 257 ~g~~i~Sgs~D-----~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d---------~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 257 DGNLLVSGSDD-----GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD---------GTIRVWDLETGSK 322 (456)
T ss_pred CCCEEEEecCC-----CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC---------ccEEEEECCCCce
Confidence 45788888765 468888988854332211111222222222357777777643 5788999988773
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=40.20 E-value=3.1e+02 Score=25.48 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=18.3
Q ss_pred CccEEEEEEeecCCceeEEEeCCCCCceee
Q 011957 92 TEEWLYILTKVEDDKLSWHALDPLAGRWQR 121 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~ 121 (474)
.++.|++.||. ...++.|.++++-++
T Consensus 125 ~enSi~~AgGD----~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 125 SENSILFAGGD----GVIYQVDLEDGRIQR 150 (325)
T ss_pred CCCcEEEecCC----eEEEEEEecCCEEEE
Confidence 46677777753 467788888887765
No 162
>PRK01742 tolB translocation protein TolB; Provisional
Probab=38.61 E-value=4.3e+02 Score=26.68 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=21.3
Q ss_pred EEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCC
Q 011957 315 EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPS 358 (474)
Q Consensus 315 ~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~ 358 (474)
..+|+.+++++.+..... . ... ...-++++++++..
T Consensus 356 ~~~Dl~~g~~~~lt~~~~------~-~~~-~~sPdG~~i~~~s~ 391 (429)
T PRK01742 356 VKQDLTSGSTEVLSSTFL------D-ESP-SISPNGIMIIYSST 391 (429)
T ss_pred EEEECCCCCeEEecCCCC------C-CCc-eECCCCCEEEEEEc
Confidence 678999998887653111 1 111 34557777777653
No 163
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=36.95 E-value=3.9e+02 Score=26.99 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=33.6
Q ss_pred CcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEec
Q 011957 193 ALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGG 236 (474)
Q Consensus 193 ~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG 236 (474)
++..++++++|-..+-=-++..+-..-.-.++-..++.+|++-=
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTf 445 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTF 445 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEE
Confidence 56689999999988877777766555555677778899888754
No 164
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=36.39 E-value=3.7e+02 Score=25.23 Aligned_cols=212 Identities=13% Similarity=0.131 Sum_probs=96.2
Q ss_pred EEeCCEEEE--EcCc-CCCcccceEEEEeCCC-Cceee---c----CCCCCCc-ceeeEEEECCEEEEEeceecCCCCCc
Q 011957 178 GAVDGCLYV--LGGF-SRALAMRNVWRYDPVL-NAWSE---V----SSMSVGR-AYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 178 ~~~~~~lyv--~GG~-~~~~~~~~v~~yd~~t-~~W~~---~----~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
.+.++.||. .+|. .+-..+.-.|+=.... ++|+. + ++-|.-- ...++.+++++||.+=-...-. ..
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a--~~ 99 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA--SN 99 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT--T-
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh--hh
Confidence 457777775 3333 2333455556655443 45764 2 2233322 2345788999999886644322 12
Q ss_pred cCceEEEEeC---CCCceEE--ccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcC-
Q 011957 246 PLQSAEVFDP---RTGLWSE--ILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDP- 319 (474)
Q Consensus 246 ~~~~~~~yd~---~t~~W~~--~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~- 319 (474)
.+...+.||- ..+.|+. ++..|.......+. .-.|+.+.+++.=|.+|=.++...-..+|...|..
T Consensus 100 km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~v--------Te~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~ 171 (367)
T PF12217_consen 100 KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAV--------TELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDA 171 (367)
T ss_dssp -EEEEEEEEEE-STTS--EEEEEES-TT----------------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTT
T ss_pred hhhhhhhhcccccccCCceeeeccccccccccccee--------eeeeeeeEecCCceeEEeccCCCCcceeeEEEeccc
Confidence 4556666763 5677873 34444322211110 00177788888888877555543333233333321
Q ss_pred ---CCCc-eEEcCCCCCCCCCccccCcceEEEECCEEEEEc-CCCC-CCCceEEEEECCCCceEEeccCCCCCCCCCCCC
Q 011957 320 ---DVNS-WVEMPVGMGEGWPVRQAGTKLSITVEGELYALD-PSGA-LDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSES 393 (474)
Q Consensus 320 ---~t~~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G-G~~~-~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~ 393 (474)
.... =+.++... . ..+.-.++-.++|.||+.- |... .....+.+-+.....|..+. .|. . ....
T Consensus 172 ~~sp~~~vrr~i~sey----~-~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr--fp~-n--vHht 241 (367)
T PF12217_consen 172 FASPGVFVRRIIPSEY----E-RNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR--FPN-N--VHHT 241 (367)
T ss_dssp TT-TT--EEEE--GGG------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE---TT------SS
T ss_pred ccCCcceeeeechhhh----c-cccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc--ccc-c--cccc
Confidence 1111 12232211 1 1122233678999999984 2222 22346667777778899985 221 1 1222
Q ss_pred CeEEEeeCCEEEEEec
Q 011957 394 PYLLAGLLGKLHVITN 409 (474)
Q Consensus 394 ~~~~~~~~~~l~v~GG 409 (474)
..-.+..++.||+||-
T Consensus 242 nlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 242 NLPFAKVGDVLYMFGS 257 (367)
T ss_dssp ---EEEETTEEEEEEE
T ss_pred CCCceeeCCEEEEEec
Confidence 3456778999999996
No 165
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.65 E-value=3.6e+02 Score=24.94 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=72.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeec-CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEV-SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+|+-.+..|.+ +.+-.+||....-.+- ..--......+ ...++.-+..||-+ ..+.+||..|++
T Consensus 28 dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~-~s~Dnskf~s~GgD---------k~v~vwDV~TGk 92 (307)
T KOG0316|consen 28 DGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAA-LSSDNSKFASCGGD---------KAVQVWDVNTGK 92 (307)
T ss_pred CCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeecc-ccccccccccCCCC---------ceEEEEEcccCe
Confidence 55566666643 4556667766553221 11111111122 22344334444422 678899999886
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEeC--CEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYR--GRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
-.+--.-. -.. .-++.+| ..+.+.|+++ ....++|-.++.-+.+.. +. .
T Consensus 93 v~Rr~rgH--~aq---------------VNtV~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQi-ld----e 143 (307)
T KOG0316|consen 93 VDRRFRGH--LAQ---------------VNTVRFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQI-LD----E 143 (307)
T ss_pred eeeecccc--cce---------------eeEEEecCcceEEEecccc-------ceeEEEEcccCCCCccch-hh----h
Confidence 43211000 011 1123343 3456666655 334677777777666654 22 2
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
..-+.. .+.+.+...|.|.. .+.+..||+..++
T Consensus 144 a~D~V~-Si~v~~heIvaGS~----DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 144 AKDGVS-SIDVAEHEIVAGSV----DGTVRTYDIRKGT 176 (307)
T ss_pred hcCcee-EEEecccEEEeecc----CCcEEEEEeecce
Confidence 333333 56666776666643 2466777776654
No 166
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=34.04 E-value=4e+02 Score=27.17 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=17.6
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEc
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEI 263 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~ 263 (474)
.+.-|+-+|++ ..+..+|.+|++-..-
T Consensus 269 ~g~~fLS~sfD---------~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 269 CGTSFLSASFD---------RFLKLWDTETGQVLSR 295 (503)
T ss_pred cCCeeeeeecc---------eeeeeeccccceEEEE
Confidence 34555566654 5677889999876643
No 167
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=33.14 E-value=1.9e+02 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCC-------------CCceEEEEECCCCceEEeccCC
Q 011957 350 GELYALDPSGAL-------------DSAKIKVYDYHDDTWKVVVGDV 383 (474)
Q Consensus 350 ~~lyv~GG~~~~-------------~~~~v~~yd~~~~~W~~v~~~~ 383 (474)
|.||+...+... ..+.++.|||.+++.+.+...+
T Consensus 10 g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L 56 (89)
T PF03088_consen 10 GTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGL 56 (89)
T ss_dssp --EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCC
Confidence 788888764322 2468999999999998876433
No 168
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=32.55 E-value=3.7e+02 Score=28.23 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=23.5
Q ss_pred CCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEE
Q 011957 217 VGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSE 262 (474)
Q Consensus 217 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~ 262 (474)
.|+.+..++.. .-.||+.|-. .+++++|++.++|-.
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg----------~evYRlNLEqGrfL~ 169 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSG----------SEVYRLNLEQGRFLN 169 (703)
T ss_pred cCcCCccccccCCCccEEEeecC----------cceEEEEcccccccc
Confidence 34444444433 4567776642 689999999999863
No 169
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=32.47 E-value=4.8e+02 Score=25.36 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=58.4
Q ss_pred eeEEEeCCEE-EEe--cc---CCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC
Q 011957 288 TGMSSYRGRL-FVP--QS---LYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL 361 (474)
Q Consensus 288 ~~~~~~~~~i-yv~--gG---~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~ 361 (474)
.+++..+|+. ||. |- ..+|......||.+.|..+++ .+..++.. | |+ --.++|+||+..-
T Consensus 155 NGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~e--vl~~GLsm--P-----hS-PRWhdgrLwvlds---- 220 (335)
T TIGR03032 155 NGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGE--VVASGLSM--P-----HS-PRWYQGKLWLLNS---- 220 (335)
T ss_pred cceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCC--EEEcCccC--C-----cC-CcEeCCeEEEEEC----
Confidence 4677788875 542 22 123433344667788888883 33332221 1 11 3467899999953
Q ss_pred CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 362 DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 362 ~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
....+..+|+++++.+.+. .+| .++ .++.-+ |.++++|-
T Consensus 221 gtGev~~vD~~~G~~e~Va-~vp--G~~-----rGL~f~-G~llvVgm 259 (335)
T TIGR03032 221 GRGELGYVDPQAGKFQPVA-FLP--GFT-----RGLAFA-GDFAFVGL 259 (335)
T ss_pred CCCEEEEEcCCCCcEEEEE-ECC--CCC-----ccccee-CCEEEEEe
Confidence 3468999999999999884 333 222 234444 66666665
No 170
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=32.00 E-value=5.7e+02 Score=26.13 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=52.3
Q ss_pred ceEEEEeCCCC-c-eeecCCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccc
Q 011957 197 RNVWRYDPVLN-A-WSEVSSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQV 273 (474)
Q Consensus 197 ~~v~~yd~~t~-~-W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 273 (474)
..+.+||...+ . -+.+....... ++++. -.+.+++.|+.+ .++.++|..+.+=...-... ....
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D---------~tvriWd~~~~~~~~~l~~h--s~~i 291 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD---------GTVRIWDVRTGECVRKLKGH--SDGI 291 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC---------CcEEEEeccCCeEEEeeecc--CCce
Confidence 56788888443 2 34444444444 22322 245888888864 68999999985443322111 1110
Q ss_pred ccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 274 LPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
......-++.+++.+..++ -..+||..++.-
T Consensus 292 -------------s~~~f~~d~~~l~s~s~d~-------~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 292 -------------SGLAFSPDGNLLVSASYDG-------TIRVWDLETGSK 322 (456)
T ss_pred -------------EEEEECCCCCEEEEcCCCc-------cEEEEECCCCce
Confidence 0222334666666665442 236888888764
No 171
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.15 E-value=4.3e+02 Score=24.08 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=97.5
Q ss_pred ceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCc-ceeeEEEECCEEEEEeceecCCCCCccCceEEE
Q 011957 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGR-AYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 174 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
...+...+|+||..-|..+ .+.+.++|..+.+=..-.+++.++ .+-+.+.+++.+|+.-=.. ...++
T Consensus 48 TQGL~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e---------gvaf~ 115 (262)
T COG3823 48 TQGLEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE---------GVAFK 115 (262)
T ss_pred hcceeeeCCEEEEeccccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc---------ceeEE
Confidence 3456667888888777544 468899999977632222233233 4567788899999874321 34667
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce---EEcCC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW---VEMPV 329 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W---~~~~~ 329 (474)
||+.+ -+.+...+.+-.+ -+.+.-+..|..-.|... ...-||++=.= .++..
T Consensus 116 ~d~~t--~~~lg~~~y~GeG---------------WgLt~d~~~LimsdGsat--------L~frdP~tfa~~~~v~VT~ 170 (262)
T COG3823 116 YDADT--LEELGRFSYEGEG---------------WGLTSDDKNLIMSDGSAT--------LQFRDPKTFAELDTVQVTD 170 (262)
T ss_pred EChHH--hhhhcccccCCcc---------------eeeecCCcceEeeCCceE--------EEecCHHHhhhcceEEEEE
Confidence 87754 3444444444444 455555555555333211 02334432110 00110
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC---ceEEeccCCCCCCCCCCC--CCeEEE--eeCC
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD---TWKVVVGDVPLPNFTDSE--SPYLLA--GLLG 402 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~---~W~~v~~~~p~~~~~~~r--~~~~~~--~~~~ 402 (474)
++.|....- -.-.++|.+|.= -.....|.+.||+++ .|..+.+..+.......+ ..-+++ .-.|
T Consensus 171 ---~g~pv~~LN--ELE~VdG~lyAN----Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~ 241 (262)
T COG3823 171 ---DGVPVSKLN--ELEWVDGELYAN----VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQD 241 (262)
T ss_pred ---CCeeccccc--ceeeeccEEEEe----eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCC
Confidence 011111100 033445555542 113568899999997 488876543322211111 112233 3457
Q ss_pred EEEEEec
Q 011957 403 KLHVITN 409 (474)
Q Consensus 403 ~l~v~GG 409 (474)
++||.|-
T Consensus 242 r~~iTGK 248 (262)
T COG3823 242 RFLITGK 248 (262)
T ss_pred eEEEecC
Confidence 8888776
No 172
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=29.93 E-value=1.9e+02 Score=28.19 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=55.3
Q ss_pred ceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEc
Q 011957 248 QSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEM 327 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~ 327 (474)
.++.++|..|...... +...+.+ .++.-++|++.|.|..+ ...-.+|.+.+.--.+
T Consensus 340 RTikvW~~st~efvRt--l~gHkRG---------------IAClQYr~rlvVSGSSD-------ntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRT--LNGHKRG---------------IACLQYRDRLVVSGSSD-------NTIRLWDIECGACLRV 395 (499)
T ss_pred ceEEEEeccceeeehh--hhccccc---------------ceehhccCeEEEecCCC-------ceEEEEeccccHHHHH
Confidence 5677888877665443 3333444 67778999999977655 3336777777654433
Q ss_pred CCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCC
Q 011957 328 PVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
-. ..+. ..+ ++-++++=.|-||++ ++|.++|+.+
T Consensus 396 Le-GHEe--LvR-----ciRFd~krIVSGaYD----GkikvWdl~a 429 (499)
T KOG0281|consen 396 LE-GHEE--LVR-----CIRFDNKRIVSGAYD----GKIKVWDLQA 429 (499)
T ss_pred Hh-chHH--hhh-----heeecCceeeecccc----ceEEEEeccc
Confidence 22 1111 111 578899999999854 4566666543
No 173
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=28.63 E-value=4.9e+02 Score=24.32 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCC
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG 359 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~ 359 (474)
+..+||.||.++ -.++||..|+.=...-. -.. +.+. |+.-..-+|.+|..|..+
T Consensus 235 ~k~~fVaGged~-------~~~kfDy~TgeEi~~~n-kgh--~gpV--hcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 235 KKEFFVAGGEDF-------KVYKFDYNTGEEIGSYN-KGH--FGPV--HCVRFSPDGELYASGSED 288 (334)
T ss_pred CCceEEecCcce-------EEEEEeccCCceeeecc-cCC--CCce--EEEEECCCCceeeccCCC
Confidence 457899998774 33678877764333211 111 1121 222345689999998754
No 174
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=5.6e+02 Score=24.70 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=54.8
Q ss_pred eCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCC-CceEEcCCC--
Q 011957 254 DPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDV-NSWVEMPVG-- 330 (474)
Q Consensus 254 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t-~~W~~~~~~-- 330 (474)
+....+|.+...|...|..+...-|.+..... -.+++..+|.|-| . +.-||.. ..|+.....
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRI------------Y--EA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRI------------Y--EAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEE------------E--ecCCccccccchhhhhhhh
Confidence 34456899888887777664332221111110 1233444555544 2 4455543 458754331
Q ss_pred CCCCCCccccCc-ceEEEE-----CCEEEEEcCCCC---CCCceEEEEECCCCceEEecc
Q 011957 331 MGEGWPVRQAGT-KLSITV-----EGELYALDPSGA---LDSAKIKVYDYHDDTWKVVVG 381 (474)
Q Consensus 331 ~~~~~p~~~~~~-~~~~~~-----~~~lyv~GG~~~---~~~~~v~~yd~~~~~W~~v~~ 381 (474)
+.. |..+... ..++.. ...++.+|-.+. .....|+.|+-..++|.++..
T Consensus 161 ~~~--pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 161 VID--PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred ccC--CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 111 2121111 112322 244677776431 123478888888889999853
No 175
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=26.39 E-value=7.4e+02 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=18.3
Q ss_pred eeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 288 TGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 288 ~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
.+....+..|++.=|++ .....||.....
T Consensus 214 icfspsne~l~vsVG~D-------kki~~yD~~s~~ 242 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYD-------KKINIYDIRSQA 242 (673)
T ss_pred ceecCCccceEEEeccc-------ceEEEeeccccc
Confidence 34455677788766665 444678887543
No 176
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=25.91 E-value=5.3e+02 Score=23.81 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=34.2
Q ss_pred eEEEEeCCC--Cce-eecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCC
Q 011957 198 NVWRYDPVL--NAW-SEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSM 266 (474)
Q Consensus 198 ~v~~yd~~t--~~W-~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 266 (474)
.+.+|.... +.+ ..+..+..+..-..++..+++|+|... +..+.+|..+..=+.+.++
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~-----------~~f~~idl~~~~~~~l~~~ 175 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTS-----------KGFYLIDLNTGSPSELLDP 175 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeC-----------CceEEEecCCCCceEEeCc
Confidence 455554443 455 555555555555566667777777532 4567788887666655543
No 177
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=25.90 E-value=7.6e+02 Score=25.64 Aligned_cols=124 Identities=20% Similarity=0.230 Sum_probs=65.5
Q ss_pred CCCcceeeEEEEC--CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceee-EEE
Q 011957 216 SVGRAYSKIGILN--NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATG-MSS 292 (474)
Q Consensus 216 p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~-~~~ 292 (474)
...|...+.|.++ +++ +++|+. -.++.++|. ..|..-+.+....+. .+.. . +.+ ...
T Consensus 314 ~g~Rv~~tsC~~nrdg~~-iAagc~--------DGSIQ~W~~--~~~~v~p~~~vk~AH-~~g~-------~-Itsi~FS 373 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL-IAAGCL--------DGSIQIWDK--GSRTVRPVMKVKDAH-LPGQ-------D-ITSISFS 373 (641)
T ss_pred CCcccCceeeecCCCcch-hhhccc--------CCceeeeec--CCcccccceEeeecc-CCCC-------c-eeEEEec
Confidence 3556666777763 566 667764 146777775 455544443221111 0000 0 022 235
Q ss_pred eCCEEEEeccCCCCcceeccceEEEcCC-----CCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCC--CCCCce
Q 011957 293 YRGRLFVPQSLYFWPFFVDVGGEVYDPD-----VNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG--ALDSAK 365 (474)
Q Consensus 293 ~~~~iyv~gG~~~~~~~~~~gg~~yd~~-----t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~--~~~~~~ 365 (474)
++|++.+.-|+++.- -++|+. -+.|+-++. +..+.-++..-+++|.+.|-+. ......
T Consensus 374 ~dg~~LlSRg~D~tL-------KvWDLrq~kkpL~~~tgL~t--------~~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTL-------KVWDLRQFKKPLNVRTGLPT--------PFPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred cccchhhhccCCCce-------eeeeccccccchhhhcCCCc--------cCCCCccccCCCceEEEecccccCCCCCce
Confidence 688887766655432 334433 334555554 1112222566788888887642 233457
Q ss_pred EEEEECCCC
Q 011957 366 IKVYDYHDD 374 (474)
Q Consensus 366 v~~yd~~~~ 374 (474)
++.||..+-
T Consensus 439 L~f~d~~t~ 447 (641)
T KOG0772|consen 439 LFFFDRMTL 447 (641)
T ss_pred EEEEeccce
Confidence 899998764
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=25.43 E-value=4.3e+02 Score=23.29 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=38.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
+.++.++-|.. -..+..||.... .+-.++........-.-+|++.++||... ....++.||.. ..
T Consensus 71 g~~favi~g~~----~~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n------~~G~l~~wd~~--~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM----PAKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGN------LNGDLEFWDVR--KK 135 (194)
T ss_pred CCEEEEEEccC----CcccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccC------CCcEEEEEECC--CC
Confidence 45666664422 237888998633 33333322222222223688888888641 12568999998 44
Q ss_pred EEccCC
Q 011957 261 SEILSM 266 (474)
Q Consensus 261 ~~~~~~ 266 (474)
+.+...
T Consensus 136 ~~i~~~ 141 (194)
T PF08662_consen 136 KKISTF 141 (194)
T ss_pred EEeecc
Confidence 555443
No 179
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.29 E-value=7.2e+02 Score=25.16 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+|.||..|-.+ ..+-+||..... .++..|.--.-.....+ ++--|++-+.+ -.++.+||+....
T Consensus 358 DgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad--------d~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 358 DGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD--------DGSVKLWDLRKLK 422 (506)
T ss_pred CceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec--------CCeEEEEEehhhc
Confidence 77888776433 467788988876 55555542222222333 33334443332 1348889987654
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCC
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV 329 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~ 329 (474)
..+.++.+-... .....+ -|+..+++|.+ +-++.|+-.+..|+++..
T Consensus 423 --n~kt~~l~~~~~--------------v~s~~fD~SGt~L~~~g~~-------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 423 --NFKTIQLDEKKE--------------VNSLSFDQSGTYLGIAGSD-------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred --ccceeecccccc--------------ceeEEEcCCCCeEEeecce-------eEEEEEecccccceeeeh
Confidence 222222111100 111222 34555555433 444788889999999876
No 180
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=24.38 E-value=8.6e+02 Score=25.69 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=36.1
Q ss_pred EEEEeCCCCceEEccCCCccccc--cccchhhccccccceee-EEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEE
Q 011957 250 AEVFDPRTGLWSEILSMPFSKAQ--VLPTAFLADLLKPIATG-MSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 250 ~~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~~~~~~~~~-~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~ 326 (474)
+..-.|....|+.+++.+ +... .-|++ .. ++..||+++.- .|+-++++..+.|..
T Consensus 210 vs~~~P~GraW~~i~~~t-~L~qISagPtg----------~VwAvt~nG~vf~R-----------~GVsRqNp~GdsWkd 267 (705)
T KOG3669|consen 210 VSVDRPCGRAWKVICPYT-DLSQISAGPTG----------VVWAVTENGAVFYR-----------EGVSRQNPEGDSWKD 267 (705)
T ss_pred ccCCCCCCceeeecCCCC-ccceEeecCcc----------eEEEEeeCCcEEEE-----------ecccccCCCCchhhh
Confidence 334567888999887654 1111 00100 12 23457777663 555789999999999
Q ss_pred cCC
Q 011957 327 MPV 329 (474)
Q Consensus 327 ~~~ 329 (474)
++.
T Consensus 268 I~t 270 (705)
T KOG3669|consen 268 IVT 270 (705)
T ss_pred ccC
Confidence 887
No 181
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=24.26 E-value=7.9e+02 Score=25.27 Aligned_cols=99 Identities=13% Similarity=-0.037 Sum_probs=50.6
Q ss_pred eEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccch
Q 011957 198 NVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTA 277 (474)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 277 (474)
.+++.++..+-=-+++.-..-|+. -...+++-.|+|-.+ -..+.+||..+..-+.+.+- ..+-.
T Consensus 342 kaFi~~~~~~~~iqv~~~~~VrY~--r~~~~~e~~vigt~d--------gD~l~iyd~~~~e~kr~e~~-lg~I~----- 405 (668)
T COG4946 342 KAFIMRPWDGYSIQVGKKGGVRYR--RIQVDPEGDVIGTND--------GDKLGIYDKDGGEVKRIEKD-LGNIE----- 405 (668)
T ss_pred cEEEECCCCCeeEEcCCCCceEEE--EEccCCcceEEeccC--------CceEEEEecCCceEEEeeCC-ccceE-----
Confidence 455555544433334333223333 233344566776643 25789999998887766431 11111
Q ss_pred hhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCC
Q 011957 278 FLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPV 329 (474)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~ 329 (474)
+..+.-+|+..+++.-. ...+++|.++++=+.+..
T Consensus 406 ----------av~vs~dGK~~vvaNdr-------~el~vididngnv~~idk 440 (668)
T COG4946 406 ----------AVKVSPDGKKVVVANDR-------FELWVIDIDNGNVRLIDK 440 (668)
T ss_pred ----------EEEEcCCCcEEEEEcCc-------eEEEEEEecCCCeeEecc
Confidence 22233455644443322 223788888887766654
No 182
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=23.80 E-value=8.4e+02 Score=25.39 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++...++||.++ .+.+|.+.-..-.....+...|...+.+.+ +++.++.|-. ...+..||.+++
T Consensus 454 ~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da---------~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA---------SRKVVLYDVASR 519 (603)
T ss_pred CCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc---------CCcEEEEEcccC
Confidence 555666666543 478887776554333333344555555555 3454444432 356778887765
Q ss_pred c
Q 011957 259 L 259 (474)
Q Consensus 259 ~ 259 (474)
.
T Consensus 520 ~ 520 (603)
T KOG0318|consen 520 E 520 (603)
T ss_pred c
Confidence 4
No 183
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.79 E-value=1.2e+02 Score=28.45 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCCCCCCCCcHHHHHHhhhccC-ccchhhHHHh
Q 011957 38 ESPRLIPSLPDEISLQILARIP-RIYYLNVKLV 69 (474)
Q Consensus 38 ~~~~~~~~LPddl~~~il~rlp-~~~~~~~~~V 69 (474)
.+...+..||.+++.+||.|+| -.++..+..|
T Consensus 197 ~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa 229 (332)
T KOG3926|consen 197 PAGLTLHDLPLECVLNILLRLSDHRDLESLAQA 229 (332)
T ss_pred cCCCCcccchHHHHHHHHHHccCcchHHHHHHh
Confidence 3466788999999999999998 4555555544
No 184
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=23.70 E-value=2.5e+02 Score=27.51 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=38.3
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCC--EEEEeccCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRG--RLFVPQSLYF 305 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~iyv~gG~~~ 305 (474)
.++|||.--.........+-..+|+||+++.+=...-++..+... -.+..++ .||...+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~S----------------i~Vsqd~~P~L~~~~~~~- 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDS----------------IAVSQDDKPLLYALSAGD- 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESE----------------EEEESSSS-EEEEEETTT-
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccce----------------EEEccCCCcEEEEEcCCC-
Confidence 579998753221111223567899999999864433333322211 1123333 466543221
Q ss_pred CcceeccceEEEcCCCCceEE
Q 011957 306 WPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 306 ~~~~~~~gg~~yd~~t~~W~~ 326 (474)
....+||..+++=..
T Consensus 312 ------~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 312 ------GTLDVYDAATGKLVR 326 (342)
T ss_dssp ------TEEEEEETTT--EEE
T ss_pred ------CeEEEEeCcCCcEEe
Confidence 224789999986544
No 185
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=23.17 E-value=53 Score=31.84 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=32.7
Q ss_pred CCCCCCcHHHHHHhhhccC--------ccchhhHHHhhHHHHHhhcC
Q 011957 41 RLIPSLPDEISLQILARIP--------RIYYLNVKLVSRAWKAAITS 79 (474)
Q Consensus 41 ~~~~~LPddl~~~il~rlp--------~~~~~~~~~Vck~W~~li~s 79 (474)
..|..||.+++.+|+-++- ++....+..||+.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6788999999999999875 55677889999999996543
No 186
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=22.75 E-value=7.6e+02 Score=24.47 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=63.8
Q ss_pred cceEEEEeCCCCc-eeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccc
Q 011957 196 MRNVWRYDPVLNA-WSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKA 271 (474)
Q Consensus 196 ~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~ 271 (474)
.+.+.+.|..+++ -.+++. ...-|..... +.++||.+. + ..+-++|+.+.+ .+...+....
T Consensus 15 ~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~r-d---------g~vsviD~~~~~--~v~~i~~G~~ 79 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANR-D---------GTVSVIDLATGK--VVATIKVGGN 79 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEET-T---------SEEEEEETTSSS--EEEEEE-SSE
T ss_pred CCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcC-C---------CeEEEEECCccc--EEEEEecCCC
Confidence 4688899988875 233332 2222444333 467999853 1 468899999887 3333332222
Q ss_pred ccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCC-CCCCCCccccCcceEEEE
Q 011957 272 QVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVG-MGEGWPVRQAGTKLSITV 348 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~-~~~~~p~~~~~~~~~~~~ 348 (474)
. .+++ ..+|+..+.+.+.. -...++|.++.+=. .++.. +....+..|.. +..+..
T Consensus 80 ~---------------~~i~~s~DG~~~~v~n~~~------~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~-aIv~s~ 137 (369)
T PF02239_consen 80 P---------------RGIAVSPDGKYVYVANYEP------GTVSVIDAETLEPVKTIPTGGMPVDGPESRVA-AIVASP 137 (369)
T ss_dssp E---------------EEEEE--TTTEEEEEEEET------TEEEEEETTT--EEEEEE--EE-TTTS---EE-EEEE-S
T ss_pred c---------------ceEEEcCCCCEEEEEecCC------CceeEeccccccceeecccccccccccCCCce-eEEecC
Confidence 2 3333 34565433332211 22367888775422 33321 11100222221 112334
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
.+..|++--. +...++..|....
T Consensus 138 ~~~~fVv~lk---d~~~I~vVdy~d~ 160 (369)
T PF02239_consen 138 GRPEFVVNLK---DTGEIWVVDYSDP 160 (369)
T ss_dssp SSSEEEEEET---TTTEEEEEETTTS
T ss_pred CCCEEEEEEc---cCCeEEEEEeccc
Confidence 5555666322 2468888886553
No 187
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=22.73 E-value=4.8e+02 Score=22.16 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=27.3
Q ss_pred EEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcc
Q 011957 225 GILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFS 269 (474)
Q Consensus 225 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~ 269 (474)
+.++|.+|-++-..... ....+..||..+++.....++|..
T Consensus 2 V~vnG~~hW~~~~~~~~----~~~~IlsFDl~~E~F~~~~~lP~~ 42 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND----EKDFILSFDLSTEKFGRSLPLPFC 42 (164)
T ss_pred EEECCEEEeeEEecCCC----CceEEEEEeccccccCCEECCCCc
Confidence 56789999988754221 112689999999999433344533
No 188
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.53 E-value=8e+02 Score=24.70 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=36.1
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCceeec-CCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEV-SSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
-.+|.|...||.+.. . -++|..|.+-... .. .-+.-+++.. -+|+....||.+ +++-++|+.
T Consensus 312 ~~DGSL~~tGGlD~~---~--RvWDlRtgr~im~L~g--H~k~I~~V~fsPNGy~lATgs~D---------nt~kVWDLR 375 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSL---G--RVWDLRTGRCIMFLAG--HIKEILSVAFSPNGYHLATGSSD---------NTCKVWDLR 375 (459)
T ss_pred cCCCceeeccCccch---h--heeecccCcEEEEecc--cccceeeEeECCCceEEeecCCC---------CcEEEeeec
Confidence 358889999997642 2 3457766653322 11 1111122222 267777777754 567778876
Q ss_pred CC
Q 011957 257 TG 258 (474)
Q Consensus 257 t~ 258 (474)
..
T Consensus 376 ~r 377 (459)
T KOG0272|consen 376 MR 377 (459)
T ss_pred cc
Confidence 43
No 189
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=22.47 E-value=2.8e+02 Score=23.14 Aligned_cols=62 Identities=29% Similarity=0.365 Sum_probs=37.4
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCc---eeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNA---WSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
..+.++|- .+.+..||...|+ ++.++ -+-.......+ ...+.++||. .++.-||-
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGn----------csi~Gfd~ 124 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGN----------CSIQGFDY 124 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCc---cceeEEEEEecCCCCCcEEEECce----------EEEEEeCC
Confidence 45667764 4789999999987 44444 22222222222 4678889995 46677776
Q ss_pred CCCc--eEE
Q 011957 256 RTGL--WSE 262 (474)
Q Consensus 256 ~t~~--W~~ 262 (474)
+-+. |+.
T Consensus 125 ~G~e~fWtV 133 (136)
T PF14781_consen 125 EGNEIFWTV 133 (136)
T ss_pred CCcEEEEEe
Confidence 5443 553
No 190
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=22.26 E-value=7e+02 Score=23.90 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=45.8
Q ss_pred ccccccccccCCCCccce-e-EEEeCCEEEEEcCcCCCcccceEEEEeCCCCceee---cC-CCCCCcceeeEEEE-C-C
Q 011957 158 RGWLGKKDALDRMGFCGC-S-IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSE---VS-SMSVGRAYSKIGIL-N-N 229 (474)
Q Consensus 158 ~~w~~~~~~~~p~pr~~~-~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~-~~p~~r~~~~~~~~-~-~ 229 (474)
+.|+..+....|+|-.-. + +.+-.+.....||.+ |..-+|+..+..=+- +. .++.-..+.+++.+ + +
T Consensus 83 Ds~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~ 157 (343)
T KOG0286|consen 83 DSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN 157 (343)
T ss_pred EcccccceeEEecCceeEEEEEECCCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC
Confidence 455555555556653222 2 223367777888875 456788887653332 22 22333333344433 4 3
Q ss_pred EEEEEeceecCCCCCccCceEEEEeCCCCceE
Q 011957 230 KLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWS 261 (474)
Q Consensus 230 ~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 261 (474)
.|.--.| -.+.-.+|+++.+=.
T Consensus 158 ~ilT~SG----------D~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 158 HILTGSG----------DMTCALWDIETGQQT 179 (343)
T ss_pred ceEecCC----------CceEEEEEcccceEE
Confidence 4443333 145667788776543
No 191
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=21.79 E-value=8e+02 Score=24.40 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=47.2
Q ss_pred EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC-----------
Q 011957 292 SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA----------- 360 (474)
Q Consensus 292 ~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------- 360 (474)
..+|.+||.-.+ .|...-+++.+.=+.+.. ..++.|....... -+.-+|.+|+-..++.
T Consensus 124 ~~ggdL~VaDAY--------lGL~~V~p~g~~a~~l~~-~~~G~~~kf~N~l-dI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 124 KKGGDLYVADAY--------LGLLKVGPEGGLAELLAD-EAEGKPFKFLNDL-DIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred cCCCeEEEEecc--------eeeEEECCCCCcceeccc-cccCeeeeecCce-eEcCCCeEEEeccccccchhheEEeee
Confidence 445699996554 455788888887555544 2233333322222 2333677888766432
Q ss_pred --CCCceEEEEECCCCceEEec
Q 011957 361 --LDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 361 --~~~~~v~~yd~~~~~W~~v~ 380 (474)
...+.+..||+.++.=+.+.
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLl 215 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLL 215 (376)
T ss_pred cCCCccceEEecCcccchhhhh
Confidence 13458999999998765553
No 192
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.03 E-value=2.9e+02 Score=29.39 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=41.0
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCce------eec--CCCC-CCcceeeEEEEC--CEEEEEeceecCCCCCccC
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAW------SEV--SSMS-VGRAYSKIGILN--NKLYAVGGVTRGPGGLTPL 247 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W------~~~--~~~p-~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~ 247 (474)
+-++.+++.||.+. .+++||..+..= ..+ .+++ .++..--+-..+ +.++|.||..
T Consensus 127 ak~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte--------- 192 (735)
T KOG0308|consen 127 AKNNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE--------- 192 (735)
T ss_pred ccCceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc---------
Confidence 45788999999864 567777765522 112 2333 334332233333 4688888864
Q ss_pred ceEEEEeCCCCc
Q 011957 248 QSAEVFDPRTGL 259 (474)
Q Consensus 248 ~~~~~yd~~t~~ 259 (474)
+.+..||+.+.+
T Consensus 193 k~lr~wDprt~~ 204 (735)
T KOG0308|consen 193 KDLRLWDPRTCK 204 (735)
T ss_pred cceEEecccccc
Confidence 678899998764
No 193
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=20.38 E-value=6.1e+02 Score=22.53 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=44.2
Q ss_pred cccceEEEEeCCCCceeecC--CCC---CCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCC
Q 011957 194 LAMRNVWRYDPVLNAWSEVS--SMS---VGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMP 267 (474)
Q Consensus 194 ~~~~~v~~yd~~t~~W~~~~--~~p---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 267 (474)
+...++|++|..++.|..+. +-+ .|. -+..+ +..|.|+=|...+. -..-..+++|++.++.=+.+-+..
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GT--vS~GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGT--VSKGGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccce--EccCCeEEEEEccCCceeEeeecc
Confidence 45789999999999987652 221 233 22333 45555554432110 011257999999999988887765
Q ss_pred cccc
Q 011957 268 FSKA 271 (474)
Q Consensus 268 ~~r~ 271 (474)
.-..
T Consensus 160 dkkq 163 (200)
T PF15525_consen 160 DKKQ 163 (200)
T ss_pred ccce
Confidence 4433
Done!