Query 011957
Match_columns 474
No_of_seqs 412 out of 3043
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 3E-42 1E-46 333.9 33.3 275 90-464 21-301 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 3E-42 1E-46 332.8 33.2 268 92-457 14-283 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 2.8E-42 9.7E-47 333.6 31.7 266 93-459 11-281 (306)
4 2vpj_A Kelch-like protein 12; 100.0 1.5E-41 5.3E-46 327.6 33.7 268 92-459 13-287 (301)
5 4asc_A Kelch repeat and BTB do 100.0 1.3E-40 4.4E-45 323.5 31.6 268 93-458 4-285 (315)
6 2woz_A Kelch repeat and BTB do 100.0 2.9E-39 1E-43 314.3 27.5 273 92-458 14-295 (318)
7 2xn4_A Kelch-like protein 2; s 100.0 1.3E-38 4.4E-43 307.4 24.1 263 66-404 35-302 (302)
8 2uvk_A YJHT; unknown function, 100.0 2.3E-38 8E-43 312.9 25.6 255 92-415 18-330 (357)
9 4asc_A Kelch repeat and BTB do 100.0 7.1E-39 2.4E-43 311.2 19.7 244 89-409 41-305 (315)
10 2woz_A Kelch repeat and BTB do 100.0 1.5E-38 5.1E-43 309.3 21.4 266 67-409 30-315 (318)
11 1zgk_A Kelch-like ECH-associat 100.0 3.8E-38 1.3E-42 305.0 23.5 261 61-400 39-308 (308)
12 3ii7_A Kelch-like protein 7; p 100.0 5.5E-38 1.9E-42 303.5 21.6 266 64-402 27-295 (306)
13 2vpj_A Kelch-like protein 12; 100.0 1.7E-37 6E-42 299.2 21.2 261 64-401 34-300 (301)
14 2uvk_A YJHT; unknown function, 100.0 1.3E-33 4.5E-38 278.8 28.0 213 170-411 8-262 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 3.1E-33 1.1E-37 298.7 22.7 250 92-410 396-674 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 2.4E-31 8.1E-36 284.2 21.8 211 169-412 386-618 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.9E-30 6.4E-35 276.6 19.7 294 69-426 174-548 (656)
18 1k3i_A Galactose oxidase precu 100.0 2.9E-29 1E-33 267.4 18.8 210 172-411 186-476 (656)
19 2ovr_B FBW7, F-BOX/WD repeat p 98.8 1.3E-06 4.4E-11 87.6 23.3 45 40-84 16-60 (445)
20 1p22_A F-BOX/WD-repeat protein 98.7 8.8E-07 3E-11 88.7 21.6 42 42-83 10-55 (435)
21 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 9E-09 3.1E-13 70.5 4.1 46 39-84 5-50 (53)
22 2e31_A FBS1, F-box only protei 98.6 1.5E-08 5E-13 94.7 3.9 52 37-88 45-97 (297)
23 3v7d_B Cell division control p 98.6 1.2E-05 4.1E-10 80.8 25.0 41 42-82 14-55 (464)
24 3mbr_X Glutamine cyclotransfer 98.1 0.00083 2.8E-08 61.0 22.5 193 173-409 22-223 (243)
25 3dsm_A Uncharacterized protein 98.0 0.0049 1.7E-07 58.8 27.1 194 175-423 47-252 (328)
26 3nol_A Glutamine cyclotransfer 97.9 0.0027 9.2E-08 58.1 22.2 191 175-409 46-244 (262)
27 3nok_A Glutaminyl cyclase; bet 97.7 0.0018 6.3E-08 59.3 16.5 189 174-409 57-254 (268)
28 2iwa_A Glutamine cyclotransfer 97.6 0.039 1.3E-06 50.8 24.7 202 175-421 24-236 (266)
29 3dsm_A Uncharacterized protein 97.6 0.026 8.8E-07 53.7 24.6 143 196-378 16-166 (328)
30 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.06 2.1E-06 51.9 24.6 168 177-409 184-367 (376)
31 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.081 2.8E-06 50.9 23.9 153 176-379 48-215 (376)
32 1rwi_B Serine/threonine-protei 97.1 0.093 3.2E-06 47.6 21.5 172 181-409 77-252 (270)
33 1l0q_A Surface layer protein; 97.0 0.014 4.7E-07 56.5 15.6 147 181-378 43-194 (391)
34 3l2o_B F-box only protein 4; s 97.0 0.00015 5.2E-09 66.9 1.1 46 42-87 4-49 (312)
35 3mbr_X Glutamine cyclotransfer 96.9 0.02 7E-07 51.8 14.5 119 215-376 15-136 (243)
36 3nok_A Glutaminyl cyclase; bet 96.6 0.072 2.5E-06 48.7 15.4 114 173-324 97-213 (268)
37 3nol_A Glutamine cyclotransfer 96.5 0.033 1.1E-06 50.9 12.8 123 211-376 33-158 (262)
38 2ast_B S-phase kinase-associat 96.5 0.00082 2.8E-08 64.3 2.3 43 39-81 5-47 (336)
39 2hqs_A Protein TOLB; TOLB, PAL 96.4 0.34 1.2E-05 47.5 20.9 194 181-423 189-386 (415)
40 3vgz_A Uncharacterized protein 96.4 0.64 2.2E-05 43.6 24.9 154 181-378 100-267 (353)
41 3bws_A Protein LP49; two-domai 96.4 0.13 4.4E-06 50.3 17.4 154 181-378 133-297 (433)
42 3hfq_A Uncharacterized protein 96.3 0.087 3E-06 49.9 15.1 72 180-263 49-124 (347)
43 1l0q_A Surface layer protein; 96.3 0.072 2.5E-06 51.3 14.7 147 182-379 2-153 (391)
44 3v9f_A Two-component system se 96.3 0.15 5E-06 54.7 18.3 151 181-380 460-618 (781)
45 2z2n_A Virginiamycin B lyase; 96.1 0.77 2.6E-05 41.8 22.6 173 180-408 66-242 (299)
46 1pex_A Collagenase-3, MMP-13; 96.1 0.19 6.6E-06 44.2 15.0 158 176-377 28-196 (207)
47 1q7f_A NHL, brain tumor CG1071 96.1 0.82 2.8E-05 41.6 24.1 189 180-420 87-278 (286)
48 3scy_A Hypothetical bacterial 96.0 0.57 2E-05 44.4 19.3 112 294-422 221-337 (361)
49 3bws_A Protein LP49; two-domai 96.0 0.35 1.2E-05 47.1 18.1 192 181-419 223-429 (433)
50 1rwi_B Serine/threonine-protei 95.9 0.5 1.7E-05 42.5 18.0 174 180-409 33-210 (270)
51 3v7d_B Cell division control p 95.9 0.31 1E-05 48.1 17.7 183 181-421 279-462 (464)
52 1gxr_A ESG1, transducin-like e 95.9 0.64 2.2E-05 43.0 19.0 146 181-377 152-300 (337)
53 2z2n_A Virginiamycin B lyase; 95.9 1 3.4E-05 41.0 24.8 174 181-409 109-284 (299)
54 1nir_A Nitrite reductase; hemo 95.7 0.64 2.2E-05 47.4 19.5 69 346-421 331-401 (543)
55 2ovr_B FBW7, F-BOX/WD repeat p 95.7 1.2 3.9E-05 43.7 20.9 150 179-378 246-396 (445)
56 2iwa_A Glutamine cyclotransfer 95.7 0.3 1E-05 44.8 15.1 153 222-422 24-179 (266)
57 3no2_A Uncharacterized protein 95.7 1.2 4.3E-05 40.7 22.0 179 177-408 43-230 (276)
58 3scy_A Hypothetical bacterial 95.7 0.43 1.5E-05 45.3 17.1 69 181-258 61-130 (361)
59 1q7f_A NHL, brain tumor CG1071 95.6 1.3 4.3E-05 40.3 22.3 180 181-411 40-227 (286)
60 3jrp_A Fusion protein of prote 95.6 0.35 1.2E-05 45.7 16.1 73 181-267 22-98 (379)
61 3vgz_A Uncharacterized protein 95.6 1.3 4.5E-05 41.3 20.0 150 181-378 152-308 (353)
62 2qc5_A Streptogramin B lactona 95.5 1.4 4.7E-05 40.0 22.5 175 180-409 71-248 (300)
63 3oyo_A Hemopexin fold protein 95.5 0.15 5.3E-06 45.5 12.0 157 180-372 12-197 (225)
64 2p1m_B Transport inhibitor res 95.5 0.0047 1.6E-07 64.0 2.3 36 41-76 4-40 (594)
65 3jrp_A Fusion protein of prote 95.5 0.58 2E-05 44.2 17.0 63 182-258 69-135 (379)
66 4a2l_A BT_4663, two-component 95.5 0.41 1.4E-05 51.3 17.5 152 181-380 462-621 (795)
67 2qc5_A Streptogramin B lactona 95.4 1.5 5.1E-05 39.8 20.4 150 180-379 29-181 (300)
68 3u4y_A Uncharacterized protein 95.4 0.54 1.9E-05 43.7 16.4 137 198-379 109-258 (331)
69 1ri6_A Putative isomerase YBHE 95.3 1.5 5.3E-05 40.5 19.1 62 351-421 244-307 (343)
70 2hqs_A Protein TOLB; TOLB, PAL 95.3 0.92 3.1E-05 44.3 18.1 158 181-380 233-394 (415)
71 4ery_A WD repeat-containing pr 95.2 1.9 6.6E-05 39.6 21.6 148 181-376 76-226 (312)
72 1itv_A MMP9; adaptive molecula 95.1 0.35 1.2E-05 42.1 12.9 153 176-375 11-176 (195)
73 3u4y_A Uncharacterized protein 95.1 0.47 1.6E-05 44.2 14.9 68 181-262 51-122 (331)
74 1p22_A F-BOX/WD-repeat protein 95.0 0.75 2.6E-05 45.0 16.7 177 177-410 138-314 (435)
75 3ow8_A WD repeat-containing pr 95.0 2.3 7.9E-05 39.6 20.3 146 181-376 133-282 (321)
76 3v9f_A Two-component system se 94.8 1.1 3.6E-05 47.9 18.4 179 181-408 417-600 (781)
77 4ery_A WD repeat-containing pr 94.8 2.4 8.3E-05 38.9 21.7 150 181-375 118-270 (312)
78 1gxr_A ESG1, transducin-like e 94.8 0.64 2.2E-05 43.0 14.8 150 181-378 108-260 (337)
79 2aq5_A Coronin-1A; WD40 repeat 94.7 2.8 9.7E-05 40.2 19.9 154 181-375 93-256 (402)
80 2ojh_A Uncharacterized protein 94.7 0.92 3.2E-05 40.8 15.4 160 181-380 95-265 (297)
81 4a2l_A BT_4663, two-component 94.7 3.8 0.00013 43.6 22.3 153 180-380 140-298 (795)
82 1k8k_C P40, ARP2/3 complex 41 94.6 0.62 2.1E-05 44.0 14.5 70 181-264 19-90 (372)
83 1k8k_C P40, ARP2/3 complex 41 94.6 2.3 8E-05 39.8 18.6 65 181-259 63-129 (372)
84 2xbg_A YCF48-like protein; pho 94.5 2.4 8.2E-05 39.8 18.3 180 175-409 83-268 (327)
85 2dg1_A DRP35, lactonase; beta 94.3 2.7 9.1E-05 39.0 18.1 79 181-263 97-177 (333)
86 3c7x_A Matrix metalloproteinas 94.3 0.57 2E-05 40.7 12.1 156 176-375 10-177 (196)
87 3ow8_A WD repeat-containing pr 94.2 3.5 0.00012 38.4 20.4 149 181-378 91-242 (321)
88 2ojh_A Uncharacterized protein 94.2 2.7 9.4E-05 37.5 17.5 157 181-380 52-213 (297)
89 1su3_A Interstitial collagenas 94.2 0.26 8.9E-06 48.9 10.8 159 176-378 267-437 (450)
90 1ri6_A Putative isomerase YBHE 94.2 3.4 0.00012 38.1 19.0 62 181-256 49-114 (343)
91 1qks_A Cytochrome CD1 nitrite 94.2 4.6 0.00016 41.3 20.5 64 181-259 208-277 (567)
92 3hfq_A Uncharacterized protein 94.1 1.4 4.7E-05 41.4 15.6 151 197-379 18-178 (347)
93 3g4e_A Regucalcin; six bladed 93.9 2 6.9E-05 39.5 16.1 180 181-410 64-262 (297)
94 3azo_A Aminopeptidase; POP fam 93.9 6.5 0.00022 40.5 21.6 195 196-422 160-367 (662)
95 3jro_A Fusion protein of prote 93.7 0.74 2.5E-05 49.0 14.0 107 181-322 20-133 (753)
96 1qhu_A Protein (hemopexin); be 93.6 2.1 7.3E-05 42.4 16.1 196 181-423 158-384 (460)
97 3ogk_B Coronatine-insensitive 93.5 0.021 7.3E-07 59.0 1.6 33 44-76 14-47 (592)
98 3fm0_A Protein CIAO1; WDR39,SG 93.4 0.83 2.9E-05 43.2 12.7 155 181-379 27-187 (345)
99 1gen_A Gelatinase A; hydrolase 93.4 2.1 7.1E-05 37.8 14.2 156 176-375 35-204 (218)
100 2fp8_A Strictosidine synthase; 93.4 1.9 6.4E-05 40.2 14.9 141 196-374 164-314 (322)
101 3jro_A Fusion protein of prote 93.3 1.5 5.3E-05 46.5 15.8 63 182-258 67-133 (753)
102 3m0c_C LDL receptor, low-densi 93.3 9.9 0.00034 40.5 24.3 172 181-409 435-620 (791)
103 1r5m_A SIR4-interacting protei 93.3 3.5 0.00012 39.3 17.2 145 181-375 217-363 (425)
104 4e54_B DNA damage-binding prot 93.3 2.3 8E-05 41.4 16.1 64 181-258 176-241 (435)
105 3fvz_A Peptidyl-glycine alpha- 93.2 5.3 0.00018 37.2 17.9 159 181-373 154-322 (329)
106 3dwl_C Actin-related protein 2 93.1 0.54 1.8E-05 44.7 10.8 151 181-374 22-178 (377)
107 1kv9_A Type II quinohemoprotei 93.0 9.8 0.00034 39.7 21.1 121 176-327 61-195 (668)
108 3ba0_A Macrophage metalloelast 93.0 2 6.8E-05 41.3 14.4 155 176-378 185-355 (365)
109 1got_B GT-beta; complex (GTP-b 92.9 2.8 9.5E-05 39.3 15.4 148 181-376 66-218 (340)
110 3lp9_A LS-24; SEED albumin, pl 92.8 0.25 8.6E-06 44.2 7.4 66 294-374 129-202 (227)
111 3mkq_A Coatomer beta'-subunit; 92.7 4.8 0.00016 42.6 18.6 146 181-375 66-219 (814)
112 1yiq_A Quinohemoprotein alcoho 92.6 12 0.00039 39.3 21.7 120 177-327 66-200 (689)
113 3azo_A Aminopeptidase; POP fam 92.5 2.8 9.7E-05 43.3 16.1 154 196-380 216-376 (662)
114 2z3z_A Dipeptidyl aminopeptida 92.4 8 0.00027 40.2 19.7 162 181-375 268-437 (706)
115 1got_B GT-beta; complex (GTP-b 92.3 7.2 0.00025 36.3 18.8 136 197-375 164-303 (340)
116 1vyh_C Platelet-activating fac 92.3 8.5 0.00029 37.1 19.0 64 181-260 161-226 (410)
117 4aez_A CDC20, WD repeat-contai 92.2 4.7 0.00016 38.6 16.5 135 197-376 113-251 (401)
118 1pjx_A Dfpase, DIISOPROPYLFLUO 92.1 3 0.0001 38.1 14.3 74 182-263 83-167 (314)
119 3i2n_A WD repeat-containing pr 92.0 3.5 0.00012 38.2 14.9 63 293-374 178-244 (357)
120 1r5m_A SIR4-interacting protei 92.0 8.5 0.00029 36.5 20.3 147 181-376 160-322 (425)
121 4aez_A CDC20, WD repeat-contai 91.9 9 0.00031 36.6 20.2 149 181-378 145-298 (401)
122 2pm7_B Protein transport prote 91.8 4.7 0.00016 36.8 15.2 71 180-264 19-93 (297)
123 3ott_A Two-component system se 91.8 3.4 0.00012 43.8 15.9 139 181-373 482-626 (758)
124 3e5z_A Putative gluconolactona 91.6 4.4 0.00015 36.9 14.8 147 179-376 123-289 (296)
125 1hxn_A Hemopexin, HPX; heme, b 91.6 2.3 7.9E-05 37.6 12.0 58 180-257 27-90 (219)
126 2dg1_A DRP35, lactonase; beta 91.5 2.4 8.2E-05 39.4 13.1 156 180-373 54-213 (333)
127 4g56_B MGC81050 protein; prote 91.1 4.2 0.00014 38.5 14.5 180 181-418 150-339 (357)
128 2hz6_A Endoplasmic reticulum t 91.1 0.49 1.7E-05 45.6 7.8 66 178-262 6-75 (369)
129 1ijq_A LDL receptor, low-densi 91.1 9.6 0.00033 35.4 24.6 172 181-409 41-226 (316)
130 3ei3_B DNA damage-binding prot 91.1 10 0.00035 35.7 18.1 144 183-373 87-236 (383)
131 3bg1_A Protein SEC13 homolog; 91.1 6.9 0.00023 36.1 15.7 68 182-263 71-143 (316)
132 1jmx_B Amine dehydrogenase; ox 91.0 1.2 4E-05 41.5 10.4 68 180-261 9-78 (349)
133 1kb0_A Quinohemoprotein alcoho 91.0 17 0.00057 38.0 24.1 78 176-263 123-207 (677)
134 3zwl_B Eukaryotic translation 90.9 9.8 0.00033 35.1 18.3 104 294-420 229-344 (369)
135 2pm9_A Protein WEB1, protein t 90.9 11 0.00038 35.7 17.7 154 182-376 126-297 (416)
136 2hes_X YDR267CP; beta-propelle 90.8 3.4 0.00012 38.5 13.3 72 181-266 118-193 (330)
137 1itv_A MMP9; adaptive molecula 90.7 2.8 9.6E-05 36.3 11.6 137 223-409 11-164 (195)
138 3v65_B Low-density lipoprotein 90.6 12 0.00042 35.8 23.8 170 181-409 127-306 (386)
139 3dwl_C Actin-related protein 2 90.6 1.1 3.7E-05 42.5 9.8 65 181-259 66-133 (377)
140 3e5z_A Putative gluconolactona 90.5 5.5 0.00019 36.2 14.3 114 229-379 40-167 (296)
141 2pbi_B Guanine nucleotide-bind 90.5 8.4 0.00029 36.2 16.0 136 197-375 176-317 (354)
142 3ei3_B DNA damage-binding prot 90.4 9.2 0.00031 36.0 16.3 67 181-261 130-198 (383)
143 4gqb_B Methylosome protein 50; 90.4 3.9 0.00013 38.6 13.4 149 181-378 138-294 (344)
144 3no2_A Uncharacterized protein 90.3 10 0.00035 34.4 19.1 174 181-410 4-184 (276)
145 3bg1_A Protein SEC13 homolog; 90.2 3.4 0.00012 38.3 12.7 70 181-264 24-97 (316)
146 3vl1_A 26S proteasome regulato 90.1 13 0.00044 35.4 17.3 65 180-259 107-172 (420)
147 1vyh_C Platelet-activating fac 90.0 8.8 0.0003 36.9 16.0 148 181-377 119-269 (410)
148 4gga_A P55CDC, cell division c 90.0 3.5 0.00012 39.9 13.0 55 197-260 125-181 (420)
149 1qhu_A Protein (hemopexin); be 89.8 16 0.00056 36.0 19.1 94 181-322 107-216 (460)
150 1n7d_A LDL receptor, low-densi 89.6 13 0.00044 39.0 17.8 172 181-409 417-602 (699)
151 2z3z_A Dipeptidyl aminopeptida 89.4 22 0.00075 36.8 20.7 158 196-379 234-397 (706)
152 1sq9_A Antiviral protein SKI8; 89.4 14 0.00049 34.7 18.9 24 349-376 302-325 (397)
153 2ad6_A Methanol dehydrogenase 89.3 21 0.00071 36.4 23.4 77 177-263 111-193 (571)
154 1w6s_A Methanol dehydrogenase 89.1 22 0.00075 36.5 25.4 123 176-328 57-200 (599)
155 3vl1_A 26S proteasome regulato 89.0 16 0.00054 34.7 23.5 100 294-417 258-360 (420)
156 1jmx_B Amine dehydrogenase; ox 89.0 14 0.00047 33.9 17.3 24 182-210 55-78 (349)
157 1pgu_A Actin interacting prote 88.7 17 0.00059 36.5 17.7 147 184-374 175-329 (615)
158 3ott_A Two-component system se 88.6 15 0.00052 38.7 17.7 107 180-328 72-181 (758)
159 3fvz_A Peptidyl-glycine alpha- 88.5 15 0.00053 33.9 27.2 195 181-419 101-319 (329)
160 3c5m_A Oligogalacturonate lyas 88.4 16 0.00056 34.1 16.7 157 197-380 216-391 (396)
161 2xbg_A YCF48-like protein; pho 88.4 16 0.00055 34.0 17.6 173 155-380 106-286 (327)
162 4gqb_B Methylosome protein 50; 88.3 9.3 0.00032 35.9 14.3 137 197-375 103-248 (344)
163 2pm9_A Protein WEB1, protein t 88.3 12 0.0004 35.5 15.4 157 184-378 27-202 (416)
164 2xdw_A Prolyl endopeptidase; a 88.2 12 0.00042 39.0 16.6 148 196-380 258-423 (710)
165 2aq5_A Coronin-1A; WD40 repeat 88.1 18 0.00062 34.3 17.8 152 228-423 93-253 (402)
166 3p5b_L Low density lipoprotein 88.1 19 0.00066 34.6 25.9 172 181-409 123-308 (400)
167 4g56_B MGC81050 protein; prote 87.9 6.4 0.00022 37.2 13.0 148 181-375 105-260 (357)
168 2ad6_A Methanol dehydrogenase 87.7 26 0.00089 35.6 27.7 121 177-327 58-193 (571)
169 3mkq_A Coatomer beta'-subunit; 87.7 11 0.00039 39.6 16.1 146 181-375 24-174 (814)
170 4a0p_A LRP6, LRP-6, low-densit 87.6 28 0.00096 35.9 25.9 169 181-409 48-225 (628)
171 2fp8_A Strictosidine synthase; 87.4 17 0.0006 33.4 16.6 195 181-419 91-310 (322)
172 1yiq_A Quinohemoprotein alcoho 87.3 9.4 0.00032 40.0 14.9 128 223-379 65-200 (689)
173 4gga_A P55CDC, cell division c 87.2 21 0.00073 34.1 17.5 50 181-237 158-207 (420)
174 1npe_A Nidogen, entactin; glyc 87.2 16 0.00054 32.6 22.9 172 181-409 47-226 (267)
175 1pex_A Collagenase-3, MMP-13; 87.0 14 0.0005 32.0 16.0 50 349-409 127-182 (207)
176 1erj_A Transcriptional repress 87.0 21 0.00072 33.9 16.6 106 228-377 134-242 (393)
177 4a11_B DNA excision repair pro 86.9 20 0.00068 33.6 16.0 61 182-258 156-219 (408)
178 2p4o_A Hypothetical protein; p 86.9 18 0.00063 33.0 20.1 156 181-379 82-247 (306)
179 1kv9_A Type II quinohemoprotei 86.9 9.6 0.00033 39.7 14.6 128 223-379 61-195 (668)
180 1w6s_A Methanol dehydrogenase 86.8 30 0.001 35.4 21.3 75 180-264 116-200 (599)
181 1sq9_A Antiviral protein SKI8; 86.8 21 0.00071 33.5 17.7 72 181-266 25-115 (397)
182 1yr2_A Prolyl oligopeptidase; 86.7 8.9 0.0003 40.4 14.5 150 196-380 293-448 (741)
183 3lrv_A PRE-mRNA-splicing facto 86.4 20 0.0007 33.1 17.4 192 177-420 90-290 (343)
184 2ynn_A Coatomer subunit beta'; 86.4 19 0.00065 32.7 15.3 65 181-259 24-88 (304)
185 1yfq_A Cell cycle arrest prote 86.4 12 0.0004 34.4 13.7 69 181-265 22-97 (342)
186 4a11_B DNA excision repair pro 86.4 13 0.00045 34.9 14.4 147 181-374 55-219 (408)
187 3g4e_A Regucalcin; six bladed 86.4 7.2 0.00024 35.6 12.0 108 228-373 24-139 (297)
188 1erj_A Transcriptional repress 86.3 6.8 0.00023 37.5 12.3 150 181-374 134-288 (393)
189 3hrp_A Uncharacterized protein 86.2 25 0.00085 33.9 22.4 197 181-416 182-404 (409)
190 3c5m_A Oligogalacturonate lyas 86.1 17 0.00059 34.0 15.1 152 196-380 167-336 (396)
191 1ck7_A Protein (gelatinase A); 86.1 5.8 0.0002 40.9 11.9 156 176-375 448-617 (631)
192 3k26_A Polycomb protein EED; W 86.1 21 0.0007 32.9 16.5 64 182-261 85-151 (366)
193 2hes_X YDR267CP; beta-propelle 86.1 9.4 0.00032 35.4 12.9 152 181-373 164-328 (330)
194 3i2n_A WD repeat-containing pr 85.7 21 0.00073 32.6 18.1 152 182-376 31-202 (357)
195 2ynn_A Coatomer subunit beta'; 85.6 21 0.00071 32.4 18.4 62 181-258 66-129 (304)
196 1npe_A Nidogen, entactin; glyc 85.5 19 0.00065 32.0 21.1 150 181-378 90-243 (267)
197 4e54_B DNA damage-binding prot 85.4 5 0.00017 39.0 10.9 148 181-375 131-284 (435)
198 2pm7_B Protein transport prote 85.1 22 0.00074 32.2 19.0 63 182-258 67-133 (297)
199 3zwl_B Eukaryotic translation 84.8 24 0.00081 32.4 15.5 67 181-263 43-111 (369)
200 2bkl_A Prolyl endopeptidase; m 84.8 40 0.0014 35.0 22.1 208 181-421 131-348 (695)
201 1pgu_A Actin interacting prote 84.8 34 0.0012 34.2 20.0 142 229-420 456-612 (615)
202 1kb0_A Quinohemoprotein alcoho 84.7 40 0.0014 35.0 27.4 121 177-328 73-208 (677)
203 3sfz_A APAF-1, apoptotic pepti 84.6 37 0.0013 37.8 19.0 65 181-261 668-736 (1249)
204 1pby_B Quinohemoprotein amine 84.3 9.5 0.00032 34.8 11.9 56 197-261 11-69 (337)
205 3dr2_A Exported gluconolactona 84.2 16 0.00053 33.4 13.3 119 179-329 139-275 (305)
206 2ecf_A Dipeptidyl peptidase IV 84.0 43 0.0015 34.7 18.4 58 197-265 129-189 (741)
207 3b7f_A Glycosyl hydrolase, BNR 83.8 31 0.001 32.9 19.4 177 181-384 67-273 (394)
208 1gen_A Gelatinase A; hydrolase 83.5 12 0.00041 32.8 11.4 22 348-375 134-155 (218)
209 2ghs_A AGR_C_1268P; regucalcin 83.5 28 0.00095 32.1 15.6 112 228-379 60-174 (326)
210 3oyo_A Hemopexin fold protein 83.4 2.8 9.5E-05 37.2 7.2 55 349-409 127-188 (225)
211 2pbi_B Guanine nucleotide-bind 83.1 30 0.001 32.3 20.9 64 294-375 209-273 (354)
212 3v64_C Agrin; beta propeller, 83.1 31 0.0011 32.4 24.8 171 180-409 83-263 (349)
213 3sfz_A APAF-1, apoptotic pepti 83.0 6.2 0.00021 44.2 11.7 182 181-419 972-1155(1249)
214 1nir_A Nitrite reductase; hemo 82.5 19 0.00066 36.3 14.2 157 181-376 291-461 (543)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 82.5 27 0.00094 31.4 15.4 105 248-379 46-167 (314)
216 3iz6_a 40S ribosomal protein R 82.3 33 0.0011 32.2 20.7 191 183-418 171-371 (380)
217 3f3f_A Nucleoporin SEH1; struc 82.0 29 0.00098 31.3 21.8 64 182-259 71-145 (351)
218 3odt_A Protein DOA1; ubiquitin 82.0 21 0.00073 31.9 13.3 148 181-379 154-302 (313)
219 1flg_A Protein (quinoprotein e 81.5 49 0.0017 33.7 26.7 71 177-263 64-144 (582)
220 3lrv_A PRE-mRNA-splicing facto 81.4 33 0.0011 31.6 17.4 65 181-259 138-203 (343)
221 3gre_A Serine/threonine-protei 81.2 39 0.0013 32.2 16.2 66 181-261 181-249 (437)
222 3fm0_A Protein CIAO1; WDR39,SG 80.9 15 0.00053 34.1 12.1 147 181-371 72-223 (345)
223 3mmy_A MRNA export factor; mRN 80.7 34 0.0012 31.3 16.6 142 182-374 54-200 (368)
224 3pe7_A Oligogalacturonate lyas 80.5 23 0.00077 33.2 13.3 67 196-267 215-283 (388)
225 4ggc_A P55CDC, cell division c 80.2 33 0.0011 30.7 15.3 63 181-259 78-140 (318)
226 2ymu_A WD-40 repeat protein; u 80.2 40 0.0014 33.5 15.7 172 181-410 396-569 (577)
227 4aow_A Guanine nucleotide-bind 79.9 35 0.0012 30.9 21.0 94 248-376 195-289 (340)
228 2bkl_A Prolyl endopeptidase; m 79.3 15 0.00052 38.2 12.4 151 196-380 251-404 (695)
229 2ghs_A AGR_C_1268P; regucalcin 78.9 40 0.0014 31.0 20.3 73 179-263 98-174 (326)
230 3sov_A LRP-6, low-density lipo 78.8 41 0.0014 31.1 19.4 168 181-408 46-225 (318)
231 2vdu_B TRNA (guanine-N(7)-)-me 78.7 49 0.0017 31.9 18.2 108 181-324 160-274 (450)
232 3b7f_A Glycosyl hydrolase, BNR 78.2 48 0.0016 31.5 24.4 173 181-385 128-334 (394)
233 2ecf_A Dipeptidyl peptidase IV 78.1 67 0.0023 33.2 20.8 61 314-379 314-374 (741)
234 2xdw_A Prolyl endopeptidase; a 77.6 70 0.0024 33.1 21.6 174 181-380 135-330 (710)
235 3c7x_A Matrix metalloproteinas 77.2 15 0.00052 31.6 9.7 62 180-259 60-129 (196)
236 3iuj_A Prolyl endopeptidase; h 76.6 62 0.0021 33.6 16.2 149 196-380 258-412 (693)
237 3frx_A Guanine nucleotide-bind 76.4 46 0.0016 30.3 14.5 23 228-259 76-98 (319)
238 3iz6_a 40S ribosomal protein R 76.3 51 0.0018 30.9 14.8 153 181-374 217-376 (380)
239 1yfq_A Cell cycle arrest prote 76.1 45 0.0016 30.2 19.4 53 349-412 262-314 (342)
240 3lp9_A LS-24; SEED albumin, pl 76.1 13 0.00046 32.7 9.2 63 179-259 70-149 (227)
241 3pe7_A Oligogalacturonate lyas 76.0 50 0.0017 30.7 17.6 161 197-379 102-279 (388)
242 1flg_A Protein (quinoprotein e 76.0 24 0.00081 36.0 12.4 124 223-378 63-200 (582)
243 3hxj_A Pyrrolo-quinoline quino 75.9 46 0.0016 30.1 17.1 137 181-378 147-290 (330)
244 1su3_A Interstitial collagenas 75.7 14 0.00048 36.4 10.1 53 349-409 367-422 (450)
245 3m0c_C LDL receptor, low-densi 75.1 82 0.0028 33.4 16.6 160 197-409 404-577 (791)
246 1pby_B Quinohemoprotein amine 74.6 37 0.0013 30.6 12.6 75 182-261 46-128 (337)
247 3frx_A Guanine nucleotide-bind 74.6 34 0.0012 31.2 12.3 63 181-260 76-141 (319)
248 3dm0_A Maltose-binding peripla 73.6 86 0.0029 32.2 17.0 148 181-375 441-594 (694)
249 3odt_A Protein DOA1; ubiquitin 73.1 50 0.0017 29.3 19.5 25 349-378 236-260 (313)
250 3k26_A Polycomb protein EED; W 71.3 61 0.0021 29.5 14.0 106 229-374 85-193 (366)
251 4ggc_A P55CDC, cell division c 71.0 33 0.0011 30.7 11.2 56 197-261 45-102 (318)
252 2vdu_B TRNA (guanine-N(7)-)-me 70.7 77 0.0026 30.4 19.1 65 182-261 210-275 (450)
253 3v65_B Low-density lipoprotein 70.2 75 0.0026 30.1 18.3 160 197-409 96-265 (386)
254 4aow_A Guanine nucleotide-bind 70.2 62 0.0021 29.1 17.1 149 181-375 97-248 (340)
255 3hrp_A Uncharacterized protein 70.1 79 0.0027 30.3 19.9 152 180-374 140-299 (409)
256 1ijq_A LDL receptor, low-densi 69.3 69 0.0024 29.3 19.2 146 180-375 87-240 (316)
257 3ba0_A Macrophage metalloelast 68.5 79 0.0027 30.0 13.3 111 181-326 236-355 (365)
258 3dr2_A Exported gluconolactona 68.5 68 0.0023 28.9 13.0 78 293-380 95-185 (305)
259 3ju4_A Endo-N-acetylneuraminid 67.7 90 0.0031 30.0 14.9 191 169-410 281-481 (670)
260 3tc9_A Hypothetical hydrolase; 67.7 69 0.0024 31.0 13.2 144 181-372 149-300 (430)
261 3o4h_A Acylamino-acid-releasin 66.7 1.1E+02 0.0037 30.6 17.5 176 199-421 134-312 (582)
262 3hxj_A Pyrrolo-quinoline quino 66.3 75 0.0026 28.6 18.2 138 180-378 106-250 (330)
263 3f3f_A Nucleoporin SEH1; struc 65.9 74 0.0025 28.4 19.7 64 181-258 22-91 (351)
264 1k32_A Tricorn protease; prote 65.8 1.6E+02 0.0054 32.1 19.2 79 181-264 389-468 (1045)
265 3s94_A LRP-6, low-density lipo 65.8 1.2E+02 0.0042 30.9 20.1 172 181-409 360-539 (619)
266 1yr2_A Prolyl oligopeptidase; 65.1 1.3E+02 0.0046 31.1 19.7 80 315-409 297-381 (741)
267 2xyi_A Probable histone-bindin 64.8 98 0.0034 29.5 15.7 22 228-258 243-264 (430)
268 2xyi_A Probable histone-bindin 64.2 44 0.0015 32.1 11.0 19 351-373 291-309 (430)
269 3dm0_A Maltose-binding peripla 63.8 1.4E+02 0.0046 30.7 16.6 65 182-260 395-464 (694)
270 2p9w_A MAL S 1 allergenic prot 63.3 70 0.0024 29.9 11.4 63 181-257 147-215 (334)
271 1k32_A Tricorn protease; prote 63.0 61 0.0021 35.5 13.0 143 197-379 317-467 (1045)
272 1nr0_A Actin interacting prote 62.8 1.3E+02 0.0045 30.3 19.7 153 181-378 201-360 (611)
273 1n7d_A LDL receptor, low-densi 61.5 39 0.0013 35.3 10.5 148 180-377 463-618 (699)
274 2qe8_A Uncharacterized protein 61.3 1E+02 0.0034 28.4 13.5 174 181-408 77-308 (343)
275 1xfd_A DIP, dipeptidyl aminope 60.0 1.6E+02 0.0053 30.2 16.4 65 314-379 230-295 (723)
276 3o4h_A Acylamino-acid-releasin 59.9 1.4E+02 0.0049 29.7 15.7 141 196-378 89-232 (582)
277 1ck7_A Protein (gelatinase A); 57.5 35 0.0012 35.1 8.9 21 348-374 547-567 (631)
278 2gop_A Trilobed protease; beta 56.5 1.2E+02 0.0039 27.5 16.9 20 196-215 84-103 (347)
279 2ymu_A WD-40 repeat protein; u 55.0 1.6E+02 0.0056 28.9 17.2 143 181-375 355-500 (577)
280 3v64_C Agrin; beta propeller, 54.0 1.4E+02 0.0047 27.7 20.1 160 197-409 53-222 (349)
281 3p5b_L Low density lipoprotein 51.9 1.6E+02 0.0056 27.9 18.5 160 197-409 92-265 (400)
282 3sjl_D Methylamine dehydrogena 51.5 88 0.003 29.9 10.3 76 228-326 291-368 (386)
283 2xzm_R RACK1; ribosome, transl 50.4 1.5E+02 0.0051 27.0 12.6 61 181-258 87-150 (343)
284 4h5i_A Guanine nucleotide-exch 47.5 1.7E+02 0.006 27.0 15.9 177 197-417 157-338 (365)
285 3gre_A Serine/threonine-protei 47.0 1.8E+02 0.0062 27.3 12.2 108 228-375 181-294 (437)
286 4hw6_A Hypothetical protein, I 46.7 2.1E+02 0.007 27.6 13.3 143 182-372 153-303 (433)
287 1xfd_A DIP, dipeptidyl aminope 45.6 2.6E+02 0.0089 28.4 16.1 18 107-124 91-108 (723)
288 1qks_A Cytochrome CD1 nitrite 45.4 2.5E+02 0.0086 28.2 16.7 56 196-260 319-376 (567)
289 2hz6_A Endoplasmic reticulum t 44.4 9 0.00031 36.5 2.0 66 225-326 6-75 (369)
290 2xe4_A Oligopeptidase B; hydro 44.0 3E+02 0.01 28.7 14.5 61 196-262 294-360 (751)
291 1hxn_A Hemopexin, HPX; heme, b 43.8 44 0.0015 29.2 6.2 64 293-373 27-90 (219)
292 2xzm_R RACK1; ribosome, transl 43.4 1.9E+02 0.0065 26.2 17.0 24 228-260 87-110 (343)
293 2mad_H Methylamine dehydrogena 42.1 2.2E+02 0.0076 26.6 12.7 33 228-260 278-310 (373)
294 3s94_A LRP-6, low-density lipo 41.3 3E+02 0.01 28.0 20.9 172 181-409 51-231 (619)
295 2oit_A Nucleoporin 214KDA; NH2 41.1 2.5E+02 0.0084 26.9 15.9 157 229-420 162-331 (434)
296 3mmy_A MRNA export factor; mRN 41.0 2E+02 0.0068 25.8 18.4 63 181-259 97-162 (368)
297 2kwv_A RAD30 homolog B, DNA po 40.4 15 0.00051 23.1 1.8 25 37-61 15-39 (48)
298 2p4o_A Hypothetical protein; p 39.9 2.1E+02 0.007 25.6 17.8 125 209-374 22-148 (306)
299 3iuj_A Prolyl endopeptidase; h 39.1 3.3E+02 0.011 27.8 22.1 102 248-379 259-365 (693)
300 3c75_H MADH, methylamine dehyd 37.6 1.1E+02 0.0037 29.7 8.6 78 180-261 83-162 (426)
301 1nr0_A Actin interacting prote 35.6 3.5E+02 0.012 27.0 20.8 147 184-375 162-315 (611)
302 3k6s_A Integrin alpha-X; cell 34.4 3.4E+02 0.011 30.0 12.8 83 315-400 415-509 (1095)
303 2oiz_A Aromatic amine dehydrog 33.9 1.3E+02 0.0046 27.9 8.6 75 182-259 16-92 (361)
304 3ju4_A Endo-N-acetylneuraminid 33.3 3.4E+02 0.012 26.2 14.7 112 288-409 287-405 (670)
305 2oiz_A Aromatic amine dehydrog 33.1 1.1E+02 0.0038 28.5 7.8 71 180-264 264-341 (361)
306 1fwx_A Nitrous oxide reductase 30.7 1.2E+02 0.004 30.9 7.7 74 181-259 101-186 (595)
307 4hw6_A Hypothetical protein, I 29.0 3.9E+02 0.013 25.6 19.3 57 348-409 353-421 (433)
308 3sjl_D Methylamine dehydrogena 28.7 84 0.0029 30.0 6.0 71 180-261 290-367 (386)
309 4hvt_A Ritya.17583.B, post-pro 28.6 2.7E+02 0.0093 29.0 10.4 153 196-380 268-436 (711)
310 3sov_A LRP-6, low-density lipo 27.4 3.5E+02 0.012 24.5 22.3 144 180-375 89-240 (318)
311 2cn3_A Xyloglucanase, beta-1,4 27.1 4.3E+02 0.015 27.4 11.8 63 206-268 231-294 (737)
312 4h5i_A Guanine nucleotide-exch 26.4 3.8E+02 0.013 24.6 18.7 151 181-373 187-343 (365)
313 3dw8_B Serine/threonine-protei 26.1 4E+02 0.014 24.7 13.3 22 351-376 240-261 (447)
314 3tc9_A Hypothetical hydrolase; 24.7 4.6E+02 0.016 25.0 20.1 69 181-263 190-263 (430)
315 2p9w_A MAL S 1 allergenic prot 24.5 4.3E+02 0.015 24.5 14.5 174 196-409 99-303 (334)
316 4a0p_A LRP6, LRP-6, low-densit 24.3 5.7E+02 0.019 25.9 21.7 140 197-379 15-161 (628)
317 2gop_A Trilobed protease; beta 23.4 3.9E+02 0.013 23.7 16.2 62 195-266 41-103 (347)
318 3amr_A 3-phytase; beta-propell 22.4 4E+02 0.014 24.9 9.3 41 196-236 98-149 (355)
319 2cn3_A Xyloglucanase, beta-1,4 22.3 4E+02 0.014 27.7 10.4 56 181-236 254-321 (737)
320 3ei3_A DNA damage-binding prot 21.8 8.4E+02 0.029 27.0 18.7 185 197-422 807-999 (1158)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3e-42 Score=333.93 Aligned_cols=275 Identities=22% Similarity=0.369 Sum_probs=228.0
Q ss_pred CCCccEEEEEEeecCC-ceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccC
Q 011957 90 GTTEEWLYILTKVEDD-KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALD 168 (474)
Q Consensus 90 ~~~~~~l~v~gg~~~~-~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (474)
...++.||++||.... ...+++||+.+++|..++++|.+
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------------------------------- 60 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP---------------------------------------- 60 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC----------------------------------------
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc----------------------------------------
Confidence 3457899999997322 23799999999999999887765
Q ss_pred CCCccceeEEEeCCEEEEEcCc----CCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCC
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGF----SRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGL 244 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~----~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 244 (474)
|..|+++.++++||++||. +.....+++++||+.+++|+.+++||.+|..|++++++++|||+||.. +.
T Consensus 61 ---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~----~~ 133 (308)
T 1zgk_A 61 ---RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSH----GC 133 (308)
T ss_dssp ---CBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEE----TT
T ss_pred ---cccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCC----CC
Confidence 8899999999999999998 455668899999999999999999999999999999999999999986 33
Q ss_pred ccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 245 TPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 245 ~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
..++++++||+.+++|+.++++|.+|.. +++++++++||++||.++.....++ ++||+.+++|
T Consensus 134 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~yd~~~~~W 196 (308)
T 1zgk_A 134 IHHNSVERYEPERDEWHLVAPMLTRRIG---------------VGVAVLNRLLYAVGGFDGTNRLNSA--ECYYPERNEW 196 (308)
T ss_dssp EECCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEEECCBCSSCBCCCE--EEEETTTTEE
T ss_pred cccccEEEECCCCCeEeECCCCCccccc---------------eEEEEECCEEEEEeCCCCCCcCceE--EEEeCCCCeE
Confidence 4678999999999999999999999998 8889999999999998876554444 9999999999
Q ss_pred EEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCE
Q 011957 325 VEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGK 403 (474)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~ 403 (474)
+.+++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+++. .++.+|..++++.++++
T Consensus 197 ~~~~~-~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~ 264 (308)
T 1zgk_A 197 RMITA-M----NTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA------PMKHRRSALGITVHQGR 264 (308)
T ss_dssp EECCC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC------CCSSCCBSCEEEEETTE
T ss_pred eeCCC-C----CCccccce-EEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC------CCCCCccceEEEEECCE
Confidence 99976 4 44666666 78889999999997543 3679999999999999985 34567888999999999
Q ss_pred EEEEecCCCCceeEEEEeecCCCCCCCCCCCCCCccccCCCCCCcccceeeeeeccccCCc
Q 011957 404 LHVITNDANHNIAVLQADVKNHFASMPSASSSSFHDCINEPASGSETDTWKMIAIRNAGSA 464 (474)
Q Consensus 404 l~v~GG~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 464 (474)
|||+||..... ....+ + .||+++++|+.++....++.
T Consensus 265 i~v~GG~~~~~-~~~~v--~---------------------~yd~~~~~W~~~~~~p~~r~ 301 (308)
T 1zgk_A 265 IYVLGGYDGHT-FLDSV--E---------------------CYDPDTDTWSEVTRMTSGRS 301 (308)
T ss_dssp EEEECCBCSSC-BCCEE--E---------------------EEETTTTEEEEEEECSSCCB
T ss_pred EEEEcCcCCCc-ccceE--E---------------------EEcCCCCEEeecCCCCCCcc
Confidence 99999965432 11111 1 46778899999977544433
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=332.80 Aligned_cols=268 Identities=23% Similarity=0.413 Sum_probs=223.3
Q ss_pred CccEEEEEEeecCCc-eeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCC
Q 011957 92 TEEWLYILTKVEDDK-LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRM 170 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~-~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~ 170 (474)
.++.||++||..... .++++||+.+++|..++++|.+
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~------------------------------------------ 51 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR------------------------------------------ 51 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC------------------------------------------
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc------------------------------------------
Confidence 457899999976433 3789999999999999887765
Q ss_pred CccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceE
Q 011957 171 GFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSA 250 (474)
Q Consensus 171 pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 250 (474)
|..|+++.++++||++||.+.....+++++||+.+++|+.+++||.+|..|++++++++|||+||.. +...++++
T Consensus 52 -r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~~ 126 (302)
T 2xn4_A 52 -RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD----GSTGLSSV 126 (302)
T ss_dssp -CBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEC----SSCEEEEE
T ss_pred -cccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCC----CCccCceE
Confidence 8889999999999999999877778999999999999999999999999999999999999999986 33457899
Q ss_pred EEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCC
Q 011957 251 EVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVG 330 (474)
Q Consensus 251 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~ 330 (474)
++||+.+++|+.++++|.+|.. +++++++++||++||.+..........++||+.+++|+++++
T Consensus 127 ~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~- 190 (302)
T 2xn4_A 127 EAYNIKSNEWFHVAPMNTRRSS---------------VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE- 190 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC-
T ss_pred EEEeCCCCeEeecCCCCCcccC---------------ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC-
Confidence 9999999999999999999998 888999999999999876542222335999999999999975
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
+ |.++.+++ +++++++||++||.+.. ..+++++||+++++|+.+. .++.+|..++++.++++|||+||
T Consensus 191 ~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~i~v~GG 259 (302)
T 2xn4_A 191 M----STRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA------DMNMCRRNAGVCAVNGLLYVVGG 259 (302)
T ss_dssp C----SSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC------CCSSCCBSCEEEEETTEEEEECC
T ss_pred C----cccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC------CCCCccccCeEEEECCEEEEECC
Confidence 4 44666666 78899999999997543 3579999999999999985 34456778899999999999999
Q ss_pred CCCCceeEEEEeecCCCCCCCCCCCCCCccccCCCCCCcccceeeeee
Q 011957 410 DANHNIAVLQADVKNHFASMPSASSSSFHDCINEPASGSETDTWKMIA 457 (474)
Q Consensus 410 ~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~ 457 (474)
..... ....++ .||+++++|+.++
T Consensus 260 ~~~~~-~~~~v~-----------------------~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 260 DDGSC-NLASVE-----------------------YYNPTTDKWTVVS 283 (302)
T ss_dssp BCSSS-BCCCEE-----------------------EEETTTTEEEECS
T ss_pred cCCCc-ccccEE-----------------------EEcCCCCeEEECC
Confidence 64431 111111 4677888999987
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.8e-42 Score=333.62 Aligned_cols=266 Identities=20% Similarity=0.268 Sum_probs=224.2
Q ss_pred ccEEEEEEeecCCceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCCc
Q 011957 93 EEWLYILTKVEDDKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGF 172 (474)
Q Consensus 93 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr 172 (474)
.+.||++||... ..++++||+.+++|..++++|.+ |
T Consensus 11 ~~~l~~~GG~~~-~~~~~~~d~~~~~W~~~~~~p~~-------------------------------------------r 46 (306)
T 3ii7_A 11 HDYRIALFGGSQ-PQSCRYFNPKDYSWTDIRCPFEK-------------------------------------------R 46 (306)
T ss_dssp CCEEEEEECCSS-TTSEEEEETTTTEEEECCCCSCC-------------------------------------------C
T ss_pred cceEEEEeCCCC-CceEEEecCCCCCEecCCCCCcc-------------------------------------------c
Confidence 468999999765 45799999999999999988765 8
Q ss_pred cceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEE
Q 011957 173 CGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 173 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
..|++++++++|||+||.+ ....+++++||+.+++|+.+++||.+|..|++++++++|||+||.+. +...++++++
T Consensus 47 ~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~ 122 (306)
T 3ii7_A 47 RDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV---GNSALYLFEC 122 (306)
T ss_dssp BSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBT---TBSCCCCEEE
T ss_pred ceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCC---CCcEeeeEEE
Confidence 9999999999999999987 66789999999999999999999999999999999999999999852 3346789999
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcc----eeccceEEEcCCCCceEEcC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPF----FVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~----~~~~gg~~yd~~t~~W~~~~ 328 (474)
||+.+++|+.++++|.+|.. ++++.++++||++||...... ..+ .++||+++++|++++
T Consensus 123 ~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~~yd~~~~~W~~~~ 185 (306)
T 3ii7_A 123 YDTRTESWHTKPSMLTQRCS---------------HGMVEANGLIYVCGGSLGNNVSGRVLNS--CEVYDPATETWTELC 185 (306)
T ss_dssp EETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEECCEESCTTTCEECCC--EEEEETTTTEEEEEC
T ss_pred EeCCCCceEeCCCCcCCcce---------------eEEEEECCEEEEECCCCCCCCcccccce--EEEeCCCCCeEEECC
Confidence 99999999999999999998 888999999999999876543 333 499999999999998
Q ss_pred CCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEE
Q 011957 329 VGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVI 407 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 407 (474)
+ + |.++.+++ +++++++||++||.+.. ..+++++||+++++|+.+. .++.+|..++++.++++|||+
T Consensus 186 ~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 186 P-M----IEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS------PMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp C-C----SSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC------CCSCCBSCCEEEEETTEEEEE
T ss_pred C-c----cchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC------CCCCCccceeEEEECCEEEEE
Confidence 5 4 44666666 78889999999996433 3568999999999999985 355678889999999999999
Q ss_pred ecCCCCceeEEEEeecCCCCCCCCCCCCCCccccCCCCCCcccceeeeeecc
Q 011957 408 TNDANHNIAVLQADVKNHFASMPSASSSSFHDCINEPASGSETDTWKMIAIR 459 (474)
Q Consensus 408 GG~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 459 (474)
||..+.. ... +++ .||+++++|+.++..
T Consensus 254 GG~~~~~-~~~--~~~---------------------~yd~~~~~W~~~~~~ 281 (306)
T 3ii7_A 254 AGFQGVG-RLG--HIL---------------------EYNTETDKWVANSKV 281 (306)
T ss_dssp ECBCSSS-BCC--EEE---------------------EEETTTTEEEEEEEE
T ss_pred eCcCCCe-eee--eEE---------------------EEcCCCCeEEeCCCc
Confidence 9965432 111 111 467888999999774
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=327.59 Aligned_cols=268 Identities=19% Similarity=0.361 Sum_probs=225.7
Q ss_pred CccEEEEEEe-ecCCc--eeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccC
Q 011957 92 TEEWLYILTK-VEDDK--LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALD 168 (474)
Q Consensus 92 ~~~~l~v~gg-~~~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (474)
.++.||++|| ..... .++++||+.+++|..++++|.+
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------------------------------- 52 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK---------------------------------------- 52 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC----------------------------------------
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh----------------------------------------
Confidence 4678999999 44332 3799999999999999987764
Q ss_pred CCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc---eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCc
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA---WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
|..|+++..+++||++||.++....+++++||+.+++ |+.++++|.+|..|++++++++|||+||.. +..
T Consensus 53 ---r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~----~~~ 125 (301)
T 2vpj_A 53 ---RRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD----GSR 125 (301)
T ss_dssp ---CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBC----SSC
T ss_pred ---hccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccC----CCc
Confidence 8899999999999999999877778999999999999 999999999999999999999999999986 334
Q ss_pred cCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceE
Q 011957 246 PLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV 325 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~ 325 (474)
.++++++||+.+++|+.++++|.+|.. +++++++++||++||.++.....++ ++||+.+++|+
T Consensus 126 ~~~~~~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~~d~~~~~W~ 188 (301)
T 2vpj_A 126 RHTSMERYDPNIDQWSMLGDMQTAREG---------------AGLVVASGVIYCLGGYDGLNILNSV--EKYDPHTGHWT 188 (301)
T ss_dssp BCCEEEEEETTTTEEEEEEECSSCCBS---------------CEEEEETTEEEEECCBCSSCBCCCE--EEEETTTTEEE
T ss_pred ccceEEEEcCCCCeEEECCCCCCCccc---------------ceEEEECCEEEEECCCCCCcccceE--EEEeCCCCcEE
Confidence 578999999999999999999999988 8889999999999998876544444 99999999999
Q ss_pred EcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCC-CceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEE
Q 011957 326 EMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALD-SAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKL 404 (474)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l 404 (474)
++++ + |.++.+++ +++++++||++||.+... .+++++||+++++|+++. .++.+|..++++.++++|
T Consensus 189 ~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i 256 (301)
T 2vpj_A 189 NVTP-M----ATKRSGAG-VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT------SMTTPRCYVGATVLRGRL 256 (301)
T ss_dssp EECC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC------CCSSCCBSCEEEEETTEE
T ss_pred eCCC-C----Ccccccce-EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC------CCCCcccceeEEEECCEE
Confidence 9975 4 44566666 788999999999975443 679999999999999985 345667889999999999
Q ss_pred EEEecCCCCceeEEEEeecCCCCCCCCCCCCCCccccCCCCCCcccceeeeeecc
Q 011957 405 HVITNDANHNIAVLQADVKNHFASMPSASSSSFHDCINEPASGSETDTWKMIAIR 459 (474)
Q Consensus 405 ~v~GG~~~~~~~~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 459 (474)
||+||..... ....++ .||+++++|+.++..
T Consensus 257 ~v~GG~~~~~-~~~~v~-----------------------~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 257 YAIAGYDGNS-LLSSIE-----------------------CYDPIIDSWEVVTSM 287 (301)
T ss_dssp EEECCBCSSS-BEEEEE-----------------------EEETTTTEEEEEEEE
T ss_pred EEEcCcCCCc-ccccEE-----------------------EEcCCCCeEEEcCCC
Confidence 9999965443 222222 457777899999773
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=323.46 Aligned_cols=268 Identities=19% Similarity=0.271 Sum_probs=217.2
Q ss_pred ccEEEEEEeecCCceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCCc
Q 011957 93 EEWLYILTKVEDDKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGF 172 (474)
Q Consensus 93 ~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr 172 (474)
++.||++|| .++++|||.+++|.. +++|. |.+|
T Consensus 4 ~~~l~~~GG-----~~~~~yd~~~~~W~~-~~~~~-----------------------------------------p~~r 36 (315)
T 4asc_A 4 QDLIFMISE-----EGAVAYDPAANECYC-ASLSS-----------------------------------------QVPK 36 (315)
T ss_dssp EEEEEEEET-----TEEEEEETTTTEEEE-EECCC-----------------------------------------CSCS
T ss_pred ceEEEEEcC-----CceEEECCCCCeEec-CCCCC-----------------------------------------CCCc
Confidence 467899998 378999999999986 55543 3469
Q ss_pred cceeEEEeCCEEEEEcCcC------CCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 173 CGCSIGAVDGCLYVLGGFS------RALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 173 ~~~~~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
..|++++.+++|||+||.. .....+++++||+.+++|+.+++||.+|.+|++++++++|||+||.... .+...
T Consensus 37 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~ 115 (315)
T 4asc_A 37 NHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIK-DGERC 115 (315)
T ss_dssp SEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESS-TTCCB
T ss_pred cceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCC-CCCcc
Confidence 9999999999999999962 1233567999999999999999999999999999999999999997632 12356
Q ss_pred CceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccC-CCCcceeccceEEEcCCCCceE
Q 011957 247 LQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSL-YFWPFFVDVGGEVYDPDVNSWV 325 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~-~~~~~~~~~gg~~yd~~t~~W~ 325 (474)
++++++||+.+++|+.++++|.+|.. +++++++++||++||. .......+ .++||+.+++|+
T Consensus 116 ~~~~~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~~yd~~~~~W~ 178 (315)
T 4asc_A 116 LDSVMCYDRLSFKWGESDPLPYVVYG---------------HTVLSHMDLVYVIGGKGSDRKCLNK--MCVYDPKKFEWK 178 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEEECCBCTTSCBCCC--EEEEETTTTEEE
T ss_pred cceEEEECCCCCcEeECCCCCCcccc---------------eeEEEECCEEEEEeCCCCCCcccce--EEEEeCCCCeEE
Confidence 88999999999999999999999998 8899999999999998 33333333 499999999999
Q ss_pred EcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEE
Q 011957 326 EMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKL 404 (474)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l 404 (474)
++++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.+. .++.+|..++++.++++|
T Consensus 179 ~~~~-~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~l 246 (315)
T 4asc_A 179 ELAP-M----QTARSLFG-ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE------AFPQERSSLSLVSLVGTL 246 (315)
T ss_dssp ECCC-C----SSCCBSCE-EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC------CCSSCCBSCEEEEETTEE
T ss_pred ECCC-C----CCchhceE-EEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC------CCCCcccceeEEEECCEE
Confidence 9986 4 45666666 78899999999997543 3568999999999999985 355678889999999999
Q ss_pred EEEecCCC-----Ccee-EEEEeecCCCCCCCCCCCCCCccccCCCCCCcccceeeeeec
Q 011957 405 HVITNDAN-----HNIA-VLQADVKNHFASMPSASSSSFHDCINEPASGSETDTWKMIAI 458 (474)
Q Consensus 405 ~v~GG~~~-----~~~~-~~~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 458 (474)
||+||... +... ....|++ .||+++++|+.+.+
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~---------------------~yd~~~~~W~~~~~ 285 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIW---------------------RYNEEEKKWEGVLR 285 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE---------------------EEETTTTEEEEEES
T ss_pred EEECCccccCcCCccccccccCcEE---------------------EecCCCChhhhhcc
Confidence 99999532 1111 1222333 57888899999966
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2.9e-39 Score=314.31 Aligned_cols=273 Identities=17% Similarity=0.286 Sum_probs=213.7
Q ss_pred CccEEEEEEeecCCceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCCCC
Q 011957 92 TEEWLYILTKVEDDKLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMG 171 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~p 171 (474)
..+.||++||. .+++|||.+++|.. ++++. |.|
T Consensus 14 ~~~~i~~~GG~-----~~~~yd~~~~~W~~-~~~~~-----------------------------------------~~~ 46 (318)
T 2woz_A 14 VKDLILLVNDT-----AAVAYDPMENECYL-TALAE-----------------------------------------QIP 46 (318)
T ss_dssp EEEEEEEECSS-----EEEEEETTTTEEEE-EEECT-----------------------------------------TSC
T ss_pred ecchhhhcccc-----ceEEECCCCCceec-ccCCc-----------------------------------------cCC
Confidence 35689999984 47999999999988 33432 246
Q ss_pred ccceeEEEeCCEEEEEcCcCC------CcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCc
Q 011957 172 FCGCSIGAVDGCLYVLGGFSR------ALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 172 r~~~~~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
|..|+++..+++||++||... ....+++++||+.+++|+.+++||.+|..|++++++++|||+||.... +..
T Consensus 47 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~ 124 (318)
T 2woz_A 47 RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ--TEA 124 (318)
T ss_dssp SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTT--TCC
T ss_pred ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCC--CCc
Confidence 899999999999999999531 122456999999999999999999999999999999999999998631 234
Q ss_pred cCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCc-ceeccceEEEcCCCCce
Q 011957 246 PLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWP-FFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~-~~~~~gg~~yd~~t~~W 324 (474)
.++++++||+.+++|+.++++|.+|.. +++++++++||++||..... ... ..++||+.+++|
T Consensus 125 ~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~--~~~~yd~~~~~W 187 (318)
T 2woz_A 125 SLDSVLCYDPVAAKWSEVKNLPIKVYG---------------HNVISHNGMIYCLGGKTDDKKCTN--RVFIYNPKKGDW 187 (318)
T ss_dssp EEEEEEEEETTTTEEEEECCCSSCEES---------------CEEEEETTEEEEECCEESSSCBCC--CEEEEETTTTEE
T ss_pred ccceEEEEeCCCCCEeECCCCCCcccc---------------cEEEEECCEEEEEcCCCCCCCccc--eEEEEcCCCCEE
Confidence 678999999999999999999999998 88899999999999975432 233 349999999999
Q ss_pred EEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCE
Q 011957 325 VEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGK 403 (474)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~ 403 (474)
+++++ + |.++..++ +++++++|||+||.... ..+++++||+++++|+++. .++.+|..++++.++++
T Consensus 188 ~~~~~-~----p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~ 255 (318)
T 2woz_A 188 KDLAP-M----KTPRSMFG-VAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT------EFPQERSSISLVSLAGS 255 (318)
T ss_dssp EEECC-C----SSCCBSCE-EEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC------CCSSCCBSCEEEEETTE
T ss_pred EECCC-C----CCCcccce-EEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC------CCCCcccceEEEEECCE
Confidence 99986 4 44566666 78899999999996443 2468999999999999985 34567888999999999
Q ss_pred EEEEecCCCCceeEEEEeec-CCCCCCCCCCCCCCccccCCCCCCcccceeeeeec
Q 011957 404 LHVITNDANHNIAVLQADVK-NHFASMPSASSSSFHDCINEPASGSETDTWKMIAI 458 (474)
Q Consensus 404 l~v~GG~~~~~~~~~~~d~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 458 (474)
|||+||.......- .++. .... ....||+++++|+.+.+
T Consensus 256 i~v~GG~~~~~~~~--~~~~~~~~~--------------~v~~yd~~~~~W~~~~~ 295 (318)
T 2woz_A 256 LYAIGGFAMIQLES--KEFAPTEVN--------------DIWKYEDDKKEWAGMLK 295 (318)
T ss_dssp EEEECCBCCBC------CCBCCBCC--------------CEEEEETTTTEEEEEES
T ss_pred EEEECCeeccCCCC--ceeccceee--------------eEEEEeCCCCEehhhcc
Confidence 99999965421100 0000 0000 11158899999999944
No 7
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=307.36 Aligned_cols=263 Identities=21% Similarity=0.357 Sum_probs=214.5
Q ss_pred HHHhhHHHHHhhcCchhhhhhhh--cCCCccEEEEEEeecCCc--eeEEEeCCCCCceeeCCCCCCccchhhhhccceeE
Q 011957 66 VKLVSRAWKAAITSSELFSFRKE--LGTTEEWLYILTKVEDDK--LSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAI 141 (474)
Q Consensus 66 ~~~Vck~W~~li~s~~~~~~r~~--~~~~~~~l~v~gg~~~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~ 141 (474)
+....++|..+.. ++..|.. ....++.||++||..... .++++||+.+++|..++++|.+
T Consensus 35 ~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------------- 98 (302)
T 2xn4_A 35 YDFKEERWHQVAE---LPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR------------- 98 (302)
T ss_dssp EETTTTEEEEECC---CSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC-------------
T ss_pred EcCcCCcEeEccc---CCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc-------------
Confidence 3344467877532 2223332 233578999999976432 3789999999999999988865
Q ss_pred eeeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcce
Q 011957 142 RMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAY 221 (474)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 221 (474)
|..|++++++++||++||.+.....+++++||+.+++|+.+++||.+|..
T Consensus 99 ------------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 148 (302)
T 2xn4_A 99 ------------------------------RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS 148 (302)
T ss_dssp ------------------------------CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS
T ss_pred ------------------------------ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC
Confidence 88999999999999999998777789999999999999999999999999
Q ss_pred eeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEec
Q 011957 222 SKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQ 301 (474)
Q Consensus 222 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~g 301 (474)
|++++++++|||+||..... ...++++++||+.+++|+.++++|.+|.. +++++++++||++|
T Consensus 149 ~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~G 211 (302)
T 2xn4_A 149 VGVGVVGGLLYAVGGYDVAS--RQCLSTVECYNATTNEWTYIAEMSTRRSG---------------AGVGVLNNLLYAVG 211 (302)
T ss_dssp CEEEEETTEEEEECCEETTT--TEECCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEEC
T ss_pred ceEEEECCEEEEEeCCCCCC--CccccEEEEEeCCCCcEEECCCCcccccc---------------ccEEEECCEEEEEC
Confidence 99999999999999986321 13578999999999999999999999998 88899999999999
Q ss_pred cCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEec
Q 011957 302 SLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 302 G~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~ 380 (474)
|.++.....+ .++||+++++|+.++. + |..+.+++ +++++++||++||.+.. ..+++++||+++++|+.++
T Consensus 212 G~~~~~~~~~--~~~yd~~~~~W~~~~~-~----~~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 212 GHDGPLVRKS--VEVYDPTTNAWRQVAD-M----NMCRRNAG-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp CBSSSSBCCC--EEEEETTTTEEEEECC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred CCCCCcccce--EEEEeCCCCCEeeCCC-C----CCccccCe-EEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 9876554443 4999999999999986 4 34555665 78899999999997543 3678999999999999985
Q ss_pred cCCCCCCCCCCCCCeEEEeeCCEE
Q 011957 381 GDVPLPNFTDSESPYLLAGLLGKL 404 (474)
Q Consensus 381 ~~~p~~~~~~~r~~~~~~~~~~~l 404 (474)
. .++.+|..+++++++++|
T Consensus 284 ~-----~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 284 S-----CMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp S-----CCSSCCBSCEEEEEEC--
T ss_pred c-----ccCcccccceEEEecccC
Confidence 3 345678889999998876
No 8
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.3e-38 Score=312.90 Aligned_cols=255 Identities=19% Similarity=0.244 Sum_probs=198.9
Q ss_pred CccEEEEEEeecCCceeEEEeCCC--CCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCC
Q 011957 92 TEEWLYILTKVEDDKLSWHALDPL--AGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDR 169 (474)
Q Consensus 92 ~~~~l~v~gg~~~~~~~~~~yd~~--~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 169 (474)
.++.||++||.... ++++||+. +++|..++++|..
T Consensus 18 ~~~~iyv~GG~~~~--~~~~~d~~~~~~~W~~~~~~p~~----------------------------------------- 54 (357)
T 2uvk_A 18 DNDTVYIGLGSAGT--AWYKLDTQAKDKKWTALAAFPGG----------------------------------------- 54 (357)
T ss_dssp ETTEEEEECGGGTT--CEEEEETTSSSCCEEECCCCTTC-----------------------------------------
T ss_pred ECCEEEEEeCcCCC--eEEEEccccCCCCeeECCCCCCC-----------------------------------------
Confidence 47899999997654 68999997 5999999988832
Q ss_pred CCccceeEEEeCCEEEEEcCc-C----CCcccceEEEEeCCCCceeecCCCC-CCcceeeEEEECCEEEEEeceecCCC-
Q 011957 170 MGFCGCSIGAVDGCLYVLGGF-S----RALAMRNVWRYDPVLNAWSEVSSMS-VGRAYSKIGILNNKLYAVGGVTRGPG- 242 (474)
Q Consensus 170 ~pr~~~~~~~~~~~lyv~GG~-~----~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~- 242 (474)
+|..|++++++++|||+||. + .....+++++||+.+++|+++++|+ .+|.+|++++++++|||+||......
T Consensus 55 -~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 133 (357)
T 2uvk_A 55 -PRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFN 133 (357)
T ss_dssp -CCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHH
T ss_pred -cCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCc
Confidence 38999999999999999998 3 2345789999999999999999998 99999999999999999999752110
Q ss_pred -----------------------------CCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe
Q 011957 243 -----------------------------GLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY 293 (474)
Q Consensus 243 -----------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 293 (474)
....++++++||+.+++|+.++++|.++... ++++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~--------------~~~~~~ 199 (357)
T 2uvk_A 134 GYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG--------------AAVVNK 199 (357)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBS--------------CEEEEE
T ss_pred ccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCccc--------------ccEEEE
Confidence 0024689999999999999999999765431 788889
Q ss_pred CCEEEEeccCCCCcceeccceEEEcC--CCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC----------
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDP--DVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL---------- 361 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~--~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~---------- 361 (474)
+++||++||.+.... .....++||+ ++++|++++. +.. |+.+.+++ +++++++|||+||....
T Consensus 200 ~~~iyv~GG~~~~~~-~~~~v~~~d~d~~~~~W~~~~~-~~~--~~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~g~ 274 (357)
T 2uvk_A 200 GDKTWLINGEAKPGL-RTDAVFELDFTGNNLKWNKLAP-VSS--PDGVAGGF-AGISNDSLIFAGGAGFKGSRENYQNGK 274 (357)
T ss_dssp TTEEEEECCEEETTE-ECCCEEEEECC---CEEEECCC-SST--TTCCBSCE-EEEETTEEEEECCEECTTHHHHHHTTC
T ss_pred CCEEEEEeeecCCCc-ccCceEEEEecCCCCcEEecCC-CCC--Ccccccce-EEEECCEEEEEcCccccCCcccccccc
Confidence 999999999765431 1133477876 9999999986 432 55566665 78999999999995321
Q ss_pred --------CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCce
Q 011957 362 --------DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNI 415 (474)
Q Consensus 362 --------~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~ 415 (474)
...++++||+++++|+++. .++.+|..++++.++++|||+||......
T Consensus 275 ~~~~~~~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 275 NYAHEGLKKSYSTDIHLWHNGKWDKSG------ELSQGRAYGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp SSTTTTCCCEECCEEEECC---CEEEE------ECSSCCBSSEEEEETTEEEEEEEECGGGC
T ss_pred eeccccccceeeEEEEecCCCceeeCC------CCCCCcccceeEEeCCEEEEEeeeCCCCC
Confidence 1247899999999999985 34566888899999999999999765543
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=7.1e-39 Score=311.17 Aligned_cols=244 Identities=22% Similarity=0.362 Sum_probs=206.9
Q ss_pred cCCCccEEEEEEeec----C--C--ceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEeeeeeeccceeeeeeeccc
Q 011957 89 LGTTEEWLYILTKVE----D--D--KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGW 160 (474)
Q Consensus 89 ~~~~~~~l~v~gg~~----~--~--~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w 160 (474)
....++.||++||.. . . ...+++||+.+++|+.++++|.+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------------------------------- 88 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-------------------------------- 88 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC--------------------------------
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc--------------------------------
Confidence 334688999999962 1 1 12589999999999999988865
Q ss_pred cccccccCCCCccceeEEEeCCEEEEEcCcC---CCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEece
Q 011957 161 LGKKDALDRMGFCGCSIGAVDGCLYVLGGFS---RALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGV 237 (474)
Q Consensus 161 ~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 237 (474)
|..|++++++++|||+||.+ +....+++++||+.+++|+.++++|.+|..|++++++++|||+||.
T Consensus 89 -----------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 89 -----------RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -----------EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -----------hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 88999999999999999975 3566899999999999999999999999999999999999999998
Q ss_pred ecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEE
Q 011957 238 TRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVY 317 (474)
Q Consensus 238 ~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~y 317 (474)
.. ....++++++||+.+++|+.+++||.+|.. +++++++++||++||.+......++ ++|
T Consensus 158 ~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~--~~y 217 (315)
T 4asc_A 158 GS---DRKCLNKMCVYDPKKFEWKELAPMQTARSL---------------FGATVHDGRIIVAAGVTDTGLTSSA--EVY 217 (315)
T ss_dssp CT---TSCBCCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEEETTEEEEEEEECSSSEEEEE--EEE
T ss_pred CC---CCcccceEEEEeCCCCeEEECCCCCCchhc---------------eEEEEECCEEEEEeccCCCCccceE--EEE
Confidence 42 334688999999999999999999999998 8999999999999998876555444 999
Q ss_pred cCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC----------CCCceEEEEECCCCceEEeccCCCCCC
Q 011957 318 DPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA----------LDSAKIKVYDYHDDTWKVVVGDVPLPN 387 (474)
Q Consensus 318 d~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v~~yd~~~~~W~~v~~~~p~~~ 387 (474)
|+++++|+.+++ + |.++.+++ +++++++|||+||.+. ...+++++||+++++|+++.
T Consensus 218 d~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~------- 284 (315)
T 4asc_A 218 SITDNKWAPFEA-F----PQERSSLS-LVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL------- 284 (315)
T ss_dssp ETTTTEEEEECC-C----SSCCBSCE-EEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE-------
T ss_pred ECCCCeEEECCC-C----CCccccee-EEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc-------
Confidence 999999999986 4 45666666 7889999999999642 12468999999999999982
Q ss_pred CCCCCCCeEEEeeCCEEEEEec
Q 011957 388 FTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 388 ~~~~r~~~~~~~~~~~l~v~GG 409 (474)
+.+|..+++++++++|||+..
T Consensus 285 -~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 285 -REIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp -SCSSCCSSCEEEEEEECGGGS
T ss_pred -cCCcCccceEEeCCEEEEEEe
Confidence 234667889999999999875
No 10
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-38 Score=309.32 Aligned_cols=266 Identities=20% Similarity=0.394 Sum_probs=213.6
Q ss_pred HHhhHHHHHhhcCchhhhhhhhcCCCccEEEEEEeec--C-C-----ceeEEEeCCCCCceeeCCCCCCccchhhhhccc
Q 011957 67 KLVSRAWKAAITSSELFSFRKELGTTEEWLYILTKVE--D-D-----KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGS 138 (474)
Q Consensus 67 ~~Vck~W~~li~s~~~~~~r~~~~~~~~~l~v~gg~~--~-~-----~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~ 138 (474)
....++|..........+..+.....++.||++||.. . . ...+++||+.+++|..++++|.+
T Consensus 30 d~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---------- 99 (318)
T 2woz_A 30 DPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA---------- 99 (318)
T ss_dssp ETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC----------
T ss_pred CCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc----------
Confidence 3444678652111112222233345688999999942 1 1 12489999999999999988765
Q ss_pred eeEeeeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcC--CCcccceEEEEeCCCCceeecCCCC
Q 011957 139 AAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFS--RALAMRNVWRYDPVLNAWSEVSSMS 216 (474)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~p 216 (474)
|..|++++++++|||+||.+ .....+++++||+.+++|+.++++|
T Consensus 100 ---------------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 146 (318)
T 2woz_A 100 ---------------------------------RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP 146 (318)
T ss_dssp ---------------------------------BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS
T ss_pred ---------------------------------ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC
Confidence 88999999999999999986 4556889999999999999999999
Q ss_pred CCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCE
Q 011957 217 VGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGR 296 (474)
Q Consensus 217 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (474)
.+|.+|++++++++|||+||... ....++++++||+.+++|+.++++|.+|.. +++++++++
T Consensus 147 ~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~ 208 (318)
T 2woz_A 147 IKVYGHNVISHNGMIYCLGGKTD---DKKCTNRVFIYNPKKGDWKDLAPMKTPRSM---------------FGVAIHKGK 208 (318)
T ss_dssp SCEESCEEEEETTEEEEECCEES---SSCBCCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTE
T ss_pred CcccccEEEEECCEEEEEcCCCC---CCCccceEEEEcCCCCEEEECCCCCCCccc---------------ceEEEECCE
Confidence 99999999999999999999863 234678999999999999999999999998 888999999
Q ss_pred EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC----------CCCceE
Q 011957 297 LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA----------LDSAKI 366 (474)
Q Consensus 297 iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~----------~~~~~v 366 (474)
||++||.+......++ ++||+++++|+++++ + |.++.+++ +++++++||++||... ...+++
T Consensus 209 iyv~GG~~~~~~~~~~--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 209 IVIAGGVTEDGLSASV--EAFDLKTNKWEVMTE-F----PQERSSIS-LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp EEEEEEEETTEEEEEE--EEEETTTCCEEECCC-C----SSCCBSCE-EEEETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred EEEEcCcCCCCccceE--EEEECCCCeEEECCC-C----CCcccceE-EEEECCEEEEECCeeccCCCCceeccceeeeE
Confidence 9999998765544433 899999999999976 4 44666666 7899999999999653 235799
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 367 KVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 367 ~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
++||+++++|+++ + +.+|..++++.++++|||+..
T Consensus 281 ~~yd~~~~~W~~~---~-----~~~r~~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 281 WKYEDDKKEWAGM---L-----KEIRYASGASCLATRLNLFKL 315 (318)
T ss_dssp EEEETTTTEEEEE---E-----SCCGGGTTCEEEEEEEEGGGC
T ss_pred EEEeCCCCEehhh---c-----ccccccccceeeCCEEEEEEe
Confidence 9999999999998 2 245667889999999998753
No 11
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.8e-38 Score=305.02 Aligned_cols=261 Identities=23% Similarity=0.378 Sum_probs=214.3
Q ss_pred cchhhHHHhhHHHHHhhcCchhhhhhhh--cCCCccEEEEEEeec----CCc--eeEEEeCCCCCceeeCCCCCCccchh
Q 011957 61 IYYLNVKLVSRAWKAAITSSELFSFRKE--LGTTEEWLYILTKVE----DDK--LSWHALDPLAGRWQRLPPMPSIIFED 132 (474)
Q Consensus 61 ~~~~~~~~Vck~W~~li~s~~~~~~r~~--~~~~~~~l~v~gg~~----~~~--~~~~~yd~~~~~W~~l~~~~~~~~~~ 132 (474)
..+..+....++|..+.. ++..|.. ....++.||++||.. ... .++++||+.+++|+.++++|.+
T Consensus 39 ~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---- 111 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLAD---LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP---- 111 (308)
T ss_dssp CCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC----
T ss_pred ceEEEEcCCCCeEeECCC---CCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC----
Confidence 344555566688987632 3333333 334578999999973 221 3789999999999999988765
Q ss_pred hhhccceeEeeeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeec
Q 011957 133 ELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEV 212 (474)
Q Consensus 133 ~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~ 212 (474)
|..|++++++++||++||.+.....+++++||+.+++|+.+
T Consensus 112 ---------------------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 112 ---------------------------------------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp ---------------------------------------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC
T ss_pred ---------------------------------------ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeEC
Confidence 88999999999999999988777789999999999999999
Q ss_pred CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE
Q 011957 213 SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS 292 (474)
Q Consensus 213 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~ 292 (474)
+++|.+|..|++++++++|||+||.. +...++++++||+.+++|+.++++|.+|.. +++++
T Consensus 153 ~~~p~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~ 213 (308)
T 1zgk_A 153 APMLTRRIGVGVAVLNRLLYAVGGFD----GTNRLNSAECYYPERNEWRMITAMNTIRSG---------------AGVCV 213 (308)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBC----SSCBCCCEEEEETTTTEEEECCCCSSCCBS---------------CEEEE
T ss_pred CCCCccccceEEEEECCEEEEEeCCC----CCCcCceEEEEeCCCCeEeeCCCCCCcccc---------------ceEEE
Confidence 99999999999999999999999986 233478999999999999999999999998 88899
Q ss_pred eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEEC
Q 011957 293 YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDY 371 (474)
Q Consensus 293 ~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~ 371 (474)
++++||++||.++.....++ ++||+++++|+++++ + |.++.+++ +++++++|||+||.+.. ..+++++||+
T Consensus 214 ~~~~iyv~GG~~~~~~~~~v--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 214 LHNCIYAAGGYDGQDQLNSV--ERYDVETETWTFVAP-M----KHRRSALG-ITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp ETTEEEEECCBCSSSBCCCE--EEEETTTTEEEECCC-C----SSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred ECCEEEEEeCCCCCCccceE--EEEeCCCCcEEECCC-C----CCCccceE-EEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 99999999998866554444 999999999999985 4 44566666 78899999999997543 3679999999
Q ss_pred CCCceEEeccCCCCCCCCCCCCCeEEEee
Q 011957 372 HDDTWKVVVGDVPLPNFTDSESPYLLAGL 400 (474)
Q Consensus 372 ~~~~W~~v~~~~p~~~~~~~r~~~~~~~~ 400 (474)
++++|+++. .++.+|..++++++
T Consensus 286 ~~~~W~~~~------~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 286 DTDTWSEVT------RMTSGRSGVGVAVT 308 (308)
T ss_dssp TTTEEEEEE------ECSSCCBSCEEEEC
T ss_pred CCCEEeecC------CCCCCcccceeEeC
Confidence 999999985 45567777877753
No 12
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=303.52 Aligned_cols=266 Identities=19% Similarity=0.222 Sum_probs=212.4
Q ss_pred hhHHHhhHHHHHhhcCchhhhhhhhcCCCccEEEEEEeecCC-ceeEEEeCCCCCceeeCCCCCCccchhhhhccceeEe
Q 011957 64 LNVKLVSRAWKAAITSSELFSFRKELGTTEEWLYILTKVEDD-KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGSAAIR 142 (474)
Q Consensus 64 ~~~~~Vck~W~~li~s~~~~~~r~~~~~~~~~l~v~gg~~~~-~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~~~~~ 142 (474)
..+....++|..+...|. .+........++.||++||.... ..++++||+.+++|..++++|.+
T Consensus 27 ~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------------- 91 (306)
T 3ii7_A 27 RYFNPKDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP-------------- 91 (306)
T ss_dssp EEEETTTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--------------
T ss_pred EEecCCCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--------------
Confidence 334445577877643222 22222233457899999998622 23799999999999999888765
Q ss_pred eeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcC-CCcccceEEEEeCCCCceeecCCCCCCcce
Q 011957 143 MWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFS-RALAMRNVWRYDPVLNAWSEVSSMSVGRAY 221 (474)
Q Consensus 143 ~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 221 (474)
|..|++++++++|||+||.+ .....+++++||+.+++|+.+++||.+|..
T Consensus 92 -----------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 142 (306)
T 3ii7_A 92 -----------------------------RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS 142 (306)
T ss_dssp -----------------------------CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred -----------------------------ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce
Confidence 89999999999999999987 556689999999999999999999999999
Q ss_pred eeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEec
Q 011957 222 SKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQ 301 (474)
Q Consensus 222 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~g 301 (474)
|++++++++|||+||..........++++++||+++++|+.++++|.+|.. +++++++++||++|
T Consensus 143 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN---------------HGLVFVKDKIFAVG 207 (306)
T ss_dssp CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEEEEC
T ss_pred eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc---------------ceEEEECCEEEEEe
Confidence 999999999999999873322112378999999999999999999999998 89999999999999
Q ss_pred cCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC-CCceEEEEECCCCceEEec
Q 011957 302 SLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL-DSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 302 G~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~v~~yd~~~~~W~~v~ 380 (474)
|.+......+ .++||+++++|+.+++ + |.++.+++ +++++++|||+||.+.. ..+++++||+++++|+.+.
T Consensus 208 G~~~~~~~~~--~~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 279 (306)
T 3ii7_A 208 GQNGLGGLDN--VEYYDIKLNEWKMVSP-M----PWKGVTVK-CAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279 (306)
T ss_dssp CEETTEEBCC--EEEEETTTTEEEECCC-C----SCCBSCCE-EEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCce--EEEeeCCCCcEEECCC-C----CCCcccee-EEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence 9876544433 4999999999999975 4 45666666 78889999999997543 4679999999999999985
Q ss_pred cCCCCCCCCCCCCCeEEEeeCC
Q 011957 381 GDVPLPNFTDSESPYLLAGLLG 402 (474)
Q Consensus 381 ~~~p~~~~~~~r~~~~~~~~~~ 402 (474)
.++.+|..++++.+.+
T Consensus 280 ------~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 280 ------KVRAFPVTSCLICVVD 295 (306)
T ss_dssp ------EEECCSCTTCEEEEEE
T ss_pred ------CcccccceeEEEEECC
Confidence 3345666677766544
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=299.18 Aligned_cols=261 Identities=21% Similarity=0.375 Sum_probs=212.4
Q ss_pred hhHHHhhHHHHHhhcCchhhhhhhhcCCCccEEEEEEeecCCc--eeEEEeCCCCCc---eeeCCCCCCccchhhhhccc
Q 011957 64 LNVKLVSRAWKAAITSSELFSFRKELGTTEEWLYILTKVEDDK--LSWHALDPLAGR---WQRLPPMPSIIFEDELRRGS 138 (474)
Q Consensus 64 ~~~~~Vck~W~~li~s~~~~~~r~~~~~~~~~l~v~gg~~~~~--~~~~~yd~~~~~---W~~l~~~~~~~~~~~~r~~~ 138 (474)
..+....++|..+...|. .+........++.||++||..... .++++||+.+++ |+.++++|.+
T Consensus 34 ~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~---------- 102 (301)
T 2vpj_A 34 EKYDPKTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR---------- 102 (301)
T ss_dssp EEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC----------
T ss_pred EEEcCCCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC----------
Confidence 344445577877543322 122222333578999999976432 379999999999 9999888765
Q ss_pred eeEeeeeeeccceeeeeeeccccccccccCCCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC
Q 011957 139 AAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG 218 (474)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 218 (474)
|..|+++.++++||++||.+.....+++++||+.+++|+.++++|.+
T Consensus 103 ---------------------------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 149 (301)
T 2vpj_A 103 ---------------------------------RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA 149 (301)
T ss_dssp ---------------------------------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC
T ss_pred ---------------------------------ccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC
Confidence 88999999999999999998777789999999999999999999999
Q ss_pred cceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEE
Q 011957 219 RAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLF 298 (474)
Q Consensus 219 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iy 298 (474)
|..|++++++++||++||.. +...++++++||+.+++|+.++++|.+|.. ++++.++++||
T Consensus 150 r~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---------------~~~~~~~~~i~ 210 (301)
T 2vpj_A 150 REGAGLVVASGVIYCLGGYD----GLNILNSVEKYDPHTGHWTNVTPMATKRSG---------------AGVALLNDHIY 210 (301)
T ss_dssp CBSCEEEEETTEEEEECCBC----SSCBCCCEEEEETTTTEEEEECCCSSCCBS---------------CEEEEETTEEE
T ss_pred cccceEEEECCEEEEECCCC----CCcccceEEEEeCCCCcEEeCCCCCccccc---------------ceEEEECCEEE
Confidence 99999999999999999975 334678999999999999999999999988 88899999999
Q ss_pred EeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCC-CceEEEEECCCCceE
Q 011957 299 VPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALD-SAKIKVYDYHDDTWK 377 (474)
Q Consensus 299 v~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~v~~yd~~~~~W~ 377 (474)
++||.+......++ ++||+++++|++++. + |.++.+++ +++++++||++||.+... .+++++||+++++|+
T Consensus 211 v~GG~~~~~~~~~v--~~yd~~~~~W~~~~~-~----p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 211 VVGGFDGTAHLSSV--EAYNIRTDSWTTVTS-M----TTPRCYVG-ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EECCBCSSSBCCCE--EEEETTTTEEEEECC-C----SSCCBSCE-EEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEeCCCCCcccceE--EEEeCCCCcEEECCC-C----CCccccee-EEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 99998876544434 999999999999975 4 44566666 788899999999975433 468999999999999
Q ss_pred EeccCCCCCCCCCCCCCeEEEeeC
Q 011957 378 VVVGDVPLPNFTDSESPYLLAGLL 401 (474)
Q Consensus 378 ~v~~~~p~~~~~~~r~~~~~~~~~ 401 (474)
.+. .++.+|..++++.+.
T Consensus 283 ~~~------~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 283 VVT------SMGTQRCDAGVCVLR 300 (301)
T ss_dssp EEE------EEEEEEESCEEEEEE
T ss_pred EcC------CCCcccccceEEEeC
Confidence 985 344567777777654
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.3e-33 Score=278.77 Aligned_cols=213 Identities=15% Similarity=0.257 Sum_probs=168.7
Q ss_pred CCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCC--CCceeecCCCC-CCcceeeEEEECCEEEEEeceec-CCCCCc
Q 011957 170 MGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPV--LNAWSEVSSMS-VGRAYSKIGILNNKLYAVGGVTR-GPGGLT 245 (474)
Q Consensus 170 ~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~ 245 (474)
.+|..+++++++++|||+||.+. +++++||+. +++|+.+++|| .+|.+|++++++++|||+||... ......
T Consensus 8 ~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~ 83 (357)
T 2uvk_A 8 VPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQ 83 (357)
T ss_dssp SCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEE
T ss_pred ccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccce
Confidence 34888888889999999999764 589999998 49999999999 89999999999999999999832 112235
Q ss_pred cCceEEEEeCCCCceEEccCCC-ccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcc----------------
Q 011957 246 PLQSAEVFDPRTGLWSEILSMP-FSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPF---------------- 308 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~---------------- 308 (474)
.++++++||+.+++|+.+++|+ .+|.. +++++++++||++||.+...+
T Consensus 84 ~~~~v~~yd~~~~~W~~~~~~~p~~r~~---------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 148 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLMSHAPMGMAG---------------HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTA 148 (357)
T ss_dssp ECCCEEEEETTTTEEEECSCCCSSCCSS---------------EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHH
T ss_pred eeccEEEEeCCCCcEEECCCCCCccccc---------------ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccc
Confidence 6889999999999999999998 78887 888889999999999865320
Q ss_pred ----------------eeccceEEEcCCCCceEEcCCCCCCCCCcc-ccCcceEEEECCEEEEEcCCCCC--CCceEEEE
Q 011957 309 ----------------FVDVGGEVYDPDVNSWVEMPVGMGEGWPVR-QAGTKLSITVEGELYALDPSGAL--DSAKIKVY 369 (474)
Q Consensus 309 ----------------~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~-~~~~~~~~~~~~~lyv~GG~~~~--~~~~v~~y 369 (474)
......++||+.+++|+.+++ + |.. +.+++ +++++++|||+||.... ...+++.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~----p~~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 149 IDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE-S----PWYGTAGAA-VVNKGDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp HHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE-C----SSCCCBSCE-EEEETTEEEEECCEEETTEECCCEEEE
T ss_pred hhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC-C----CCCCccccc-EEEECCEEEEEeeecCCCcccCceEEE
Confidence 001234999999999999975 4 323 33344 88899999999996432 35689999
Q ss_pred EC--CCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCC
Q 011957 370 DY--HDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDA 411 (474)
Q Consensus 370 d~--~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~ 411 (474)
|+ ++++|+++. .+|. +..|..++++.++++|||+||..
T Consensus 223 d~d~~~~~W~~~~-~~~~---~~~~~~~~~~~~~~~iyv~GG~~ 262 (357)
T 2uvk_A 223 DFTGNNLKWNKLA-PVSS---PDGVAGGFAGISNDSLIFAGGAG 262 (357)
T ss_dssp ECC---CEEEECC-CSST---TTCCBSCEEEEETTEEEEECCEE
T ss_pred EecCCCCcEEecC-CCCC---CcccccceEEEECCEEEEEcCcc
Confidence 86 999999985 3332 34456778999999999999953
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=3.1e-33 Score=298.71 Aligned_cols=250 Identities=11% Similarity=0.128 Sum_probs=198.3
Q ss_pred CccEEEEEEeecCC-ceeEEEeCCCCCceeeCC-CCCCccchhhhhccceeEeeeeeeccceeeeeeeccccccccccCC
Q 011957 92 TEEWLYILTKVEDD-KLSWHALDPLAGRWQRLP-PMPSIIFEDELRRGSAAIRMWNVLGSTIKIADLIRGWLGKKDALDR 169 (474)
Q Consensus 92 ~~~~l~v~gg~~~~-~~~~~~yd~~~~~W~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p 169 (474)
.++.||++||.... ..++++||+.+++|..++ ++|.. ..|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--------------------------------------~~p 437 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS--------------------------------------EVP 437 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS--------------------------------------CCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC--------------------------------------CCC
Confidence 57889999997642 237999999999999998 65422 134
Q ss_pred CCccceeEEEe--CCEEEEEcCcCCCc-ccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCc
Q 011957 170 MGFCGCSIGAV--DGCLYVLGGFSRAL-AMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 170 ~pr~~~~~~~~--~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~ 245 (474)
.+|.+|+++++ +++|||+||.+... ..+++|+||+.+++|+.+++||.+|.+|+++++ +++|||+||.... .
T Consensus 438 ~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~----~ 513 (695)
T 2zwa_A 438 VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----P 513 (695)
T ss_dssp CCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS----C
T ss_pred ccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC----C
Confidence 46999999999 99999999987644 689999999999999999999999999999997 9999999998521 1
Q ss_pred cCceEEEEeCCCCceEEccC---CCccccccccchhhccccccceeeEEEeC---CEEEEeccCCCC--cceeccceEEE
Q 011957 246 PLQSAEVFDPRTGLWSEILS---MPFSKAQVLPTAFLADLLKPIATGMSSYR---GRLFVPQSLYFW--PFFVDVGGEVY 317 (474)
Q Consensus 246 ~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~iyv~gG~~~~--~~~~~~gg~~y 317 (474)
++++||+.+++|+.+++ +|.+|.. +++++++ ++||++||.... .... ..++|
T Consensus 514 ---~v~~yd~~t~~W~~~~~~g~~p~~r~~---------------~~a~v~~~~~~~iyv~GG~~~~~~~~~~--~v~~y 573 (695)
T 2zwa_A 514 ---AMLLYNVTEEIFKDVTPKDEFFQNSLV---------------SAGLEFDPVSKQGIILGGGFMDQTTVSD--KAIIF 573 (695)
T ss_dssp ---SEEEEETTTTEEEECCCSSGGGGSCCB---------------SCEEEEETTTTEEEEECCBCTTSSCBCC--EEEEE
T ss_pred ---CEEEEECCCCceEEccCCCCCCCcccc---------------eeEEEEeCCCCEEEEECCcCCCCCeeeC--cEEEE
Confidence 89999999999999986 8888888 7767766 899999998543 2232 34999
Q ss_pred cCCCCc------eEEcCCCCCCCCCccccCcceEEEEC-CEEEEEcCCCCC----CCceEEEEECCCCceEEeccCCCCC
Q 011957 318 DPDVNS------WVEMPVGMGEGWPVRQAGTKLSITVE-GELYALDPSGAL----DSAKIKVYDYHDDTWKVVVGDVPLP 386 (474)
Q Consensus 318 d~~t~~------W~~~~~~~~~~~p~~~~~~~~~~~~~-~~lyv~GG~~~~----~~~~v~~yd~~~~~W~~v~~~~p~~ 386 (474)
|+.+++ |+.+.. ++ +.++.+++ +++++ ++|||+||.+.. ..+++++||+++++|+.+. +|..
T Consensus 574 d~~~~~w~~~~~W~~~~~-~p---~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~--~p~~ 646 (695)
T 2zwa_A 574 KYDAENATEPITVIKKLQ-HP---LFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP--ISRR 646 (695)
T ss_dssp EECTTCSSCCEEEEEEEE-CG---GGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC--CCHH
T ss_pred EccCCccccceEEEEcCC-CC---CCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee--cccc
Confidence 999999 888875 31 35666776 67777 999999996433 3679999999999999653 3321
Q ss_pred C---CCCCCCCeEEEeeCC-EEEEEecC
Q 011957 387 N---FTDSESPYLLAGLLG-KLHVITND 410 (474)
Q Consensus 387 ~---~~~~r~~~~~~~~~~-~l~v~GG~ 410 (474)
. ....+.+|+++.+++ +|||+||.
T Consensus 647 ~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 647 IWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp HHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred ccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 1 112456688887776 99999994
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.97 E-value=2.4e-31 Score=284.20 Aligned_cols=211 Identities=14% Similarity=0.158 Sum_probs=174.7
Q ss_pred CCCccceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecC-C-----CCCCcceeeEEEE--CCEEEEEeceecC
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVS-S-----MSVGRAYSKIGIL--NNKLYAVGGVTRG 240 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~-----~p~~r~~~~~~~~--~~~lyv~GG~~~~ 240 (474)
|.+|+++++ ++++.|||+||.+. ...+++++||+.+++|+.++ + ||.+|.+|+++++ +++|||+||....
T Consensus 386 p~rr~g~~~-~~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~ 463 (695)
T 2zwa_A 386 INRKFGDVD-VAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP 463 (695)
T ss_dssp TCCBSCEEE-ECSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST
T ss_pred CCCceeEEE-EECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC
Confidence 444665544 48999999999877 77899999999999999988 5 8999999999999 9999999998632
Q ss_pred CCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcC
Q 011957 241 PGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDP 319 (474)
Q Consensus 241 ~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~ 319 (474)
...++++++||+.+++|+.+++||.+|.. |+++++ +++|||+||.+... ..++||+
T Consensus 464 ---~~~~~dv~~yd~~t~~W~~~~~~p~~R~~---------------h~~~~~~~~~iyv~GG~~~~~-----~v~~yd~ 520 (695)
T 2zwa_A 464 ---HQGLSDNWIFDMKTREWSMIKSLSHTRFR---------------HSACSLPDGNVLILGGVTEGP-----AMLLYNV 520 (695)
T ss_dssp ---TCBCCCCEEEETTTTEEEECCCCSBCCBS---------------CEEEECTTSCEEEECCBCSSC-----SEEEEET
T ss_pred ---CCccccEEEEeCCCCcEEECCCCCCCccc---------------ceEEEEcCCEEEEECCCCCCC-----CEEEEEC
Confidence 22678999999999999999999999998 888885 99999999987654 3499999
Q ss_pred CCCceEEcCCCCCCCCCccccCcceEEEEC---CEEEEEcCCCC---CCCceEEEEECCCCc------eEEeccCCCCCC
Q 011957 320 DVNSWVEMPVGMGEGWPVRQAGTKLSITVE---GELYALDPSGA---LDSAKIKVYDYHDDT------WKVVVGDVPLPN 387 (474)
Q Consensus 320 ~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~---~~lyv~GG~~~---~~~~~v~~yd~~~~~------W~~v~~~~p~~~ 387 (474)
.+++|+.++.. . ..|.++.+++ +++++ ++|||+||... ...+++++||+++++ |+.+.. +|
T Consensus 521 ~t~~W~~~~~~-g-~~p~~r~~~~-a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~-~p--- 593 (695)
T 2zwa_A 521 TEEIFKDVTPK-D-EFFQNSLVSA-GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ-HP--- 593 (695)
T ss_dssp TTTEEEECCCS-S-GGGGSCCBSC-EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE-CG---
T ss_pred CCCceEEccCC-C-CCCCccccee-EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC-CC---
Confidence 99999999862 1 1366777776 56656 89999999743 336799999999999 888853 22
Q ss_pred CCCCCCCeEEEeeC-CEEEEEecCCC
Q 011957 388 FTDSESPYLLAGLL-GKLHVITNDAN 412 (474)
Q Consensus 388 ~~~~r~~~~~~~~~-~~l~v~GG~~~ 412 (474)
+.+|..++++.++ ++|||+||...
T Consensus 594 -~~~R~~~~~~~~~~~~iyv~GG~~~ 618 (695)
T 2zwa_A 594 -LFQRYGSQIKYITPRKLLIVGGTSP 618 (695)
T ss_dssp -GGCCBSCEEEEEETTEEEEECCBCS
T ss_pred -CCCcccceEEEeCCCEEEEECCccC
Confidence 3568889999999 99999999644
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=1.9e-30 Score=276.63 Aligned_cols=294 Identities=13% Similarity=0.127 Sum_probs=202.5
Q ss_pred hhHHHHHhhcCchhhhhhhhcCCC--ccEEEEEEeecCC--------ceeEEEeCCCCCceeeCCCCCCccchhhhhccc
Q 011957 69 VSRAWKAAITSSELFSFRKELGTT--EEWLYILTKVEDD--------KLSWHALDPLAGRWQRLPPMPSIIFEDELRRGS 138 (474)
Q Consensus 69 Vck~W~~li~s~~~~~~r~~~~~~--~~~l~v~gg~~~~--------~~~~~~yd~~~~~W~~l~~~~~~~~~~~~r~~~ 138 (474)
...+|..+...|.. ....... ++.||++||.... ...+++||+.+++|..++.+|.+.
T Consensus 174 ~~~~W~~~~~~P~~---~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--------- 241 (656)
T 1k3i_A 174 GLGRWGPTIDLPIV---PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--------- 241 (656)
T ss_dssp TSCEEEEEEECSSC---CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC---------
T ss_pred CCCeeeeeccCCCC---ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC---------
Confidence 33567766554441 1122222 7899999987542 236899999999999988776541
Q ss_pred eeEeeeeeeccceeeeeeeccccccccccCCCCcccee-EEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCC
Q 011957 139 AAIRMWNVLGSTIKIADLIRGWLGKKDALDRMGFCGCS-IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSV 217 (474)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~pr~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 217 (474)
.+.+++ ++..+++||++||.+. .++++||+.+++|+++++|+.
T Consensus 242 --------------------------------~~~~~~~~~~~~g~lyv~GG~~~----~~v~~yd~~t~~W~~~~~~~~ 285 (656)
T 1k3i_A 242 --------------------------------DMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQV 285 (656)
T ss_dssp --------------------------------CCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCCSS
T ss_pred --------------------------------CCccccccCCCCCCEEEeCCCCC----CceEEecCcCCceeECCCCCc
Confidence 122223 3346899999999764 379999999999999999999
Q ss_pred CcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEc-----cCCCccccccccchhhcccc--------
Q 011957 218 GRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEI-----LSMPFSKAQVLPTAFLADLL-------- 283 (474)
Q Consensus 218 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~-----~~~p~~r~~~~~~~~~~~~~-------- 283 (474)
+|.+|+++++ +++|||+||... +...++++|+||+.+++|+.+ .+|+..+... .....+.+
T Consensus 286 ~R~~~s~~~~~dg~iyv~GG~~~---~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~--~~~~~~~iyv~Gg~~g 360 (656)
T 1k3i_A 286 ARGYQSSATMSDGRVFTIGGSWS---GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG--LYRSDNHAWLFGWKKG 360 (656)
T ss_dssp CCSSCEEEECTTSCEEEECCCCC---SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG--GGTTTCSCCEEECGGG
T ss_pred cccccceEEecCCeEEEEeCccc---CCcccccceEeCCCCCcceeCCCccccccccccccc--eeecCCceEEEECCCC
Confidence 9999999999 999999999532 233678999999999999997 4454443210 00000000
Q ss_pred ------------------------------------ccceeeEEE---eCCEEEEeccCCCC---cceec-cceEEEcCC
Q 011957 284 ------------------------------------KPIATGMSS---YRGRLFVPQSLYFW---PFFVD-VGGEVYDPD 320 (474)
Q Consensus 284 ------------------------------------~~~~~~~~~---~~~~iyv~gG~~~~---~~~~~-~gg~~yd~~ 320 (474)
....++++. .+++||++||.... ....+ ...++||+.
T Consensus 361 ~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~ 440 (656)
T 1k3i_A 361 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG 440 (656)
T ss_dssp CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred cEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC
Confidence 011123332 58999999996532 11111 124899999
Q ss_pred CCceEEcC-CCCCCCCCccccCcceEEEE-CCEEEEEcCCCC-------CCCceEEEEECCCCceEEeccCCCCCCCCCC
Q 011957 321 VNSWVEMP-VGMGEGWPVRQAGTKLSITV-EGELYALDPSGA-------LDSAKIKVYDYHDDTWKVVVGDVPLPNFTDS 391 (474)
Q Consensus 321 t~~W~~~~-~~~~~~~p~~~~~~~~~~~~-~~~lyv~GG~~~-------~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~ 391 (474)
+++|+++. ..| |..|..+. ++++ +++|||+||.+. ....++++||+++++|+.+. .++.+
T Consensus 441 ~~~W~~~~~~~m----p~~R~~~~-~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~------~~~~~ 509 (656)
T 1k3i_A 441 TSPNTVFASNGL----YFARTFHT-SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN------PNSIV 509 (656)
T ss_dssp SCCEEEECTTCC----SSCCBSCE-EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC------CCSSC
T ss_pred CCCeeEEccCCC----CCCcccCC-eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC------CCCCc
Confidence 99999986 224 55676666 4555 999999999642 22468999999999999975 44567
Q ss_pred CCCeEEEee--CCEEEEEecCCCCc--eeEEEEeecCCC
Q 011957 392 ESPYLLAGL--LGKLHVITNDANHN--IAVLQADVKNHF 426 (474)
Q Consensus 392 r~~~~~~~~--~~~l~v~GG~~~~~--~~~~~~d~~~~~ 426 (474)
|..|+++.+ +++|||+||..+.. ......+++.|.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred cccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 888888877 99999999964432 223344555554
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=2.9e-29 Score=267.41 Aligned_cols=210 Identities=14% Similarity=0.190 Sum_probs=155.8
Q ss_pred ccceeEEEe--CCEEEEEcCcCCCc------ccceEEEEeCCCCceeecCCCCCCcceee--EEE-ECCEEEEEeceecC
Q 011957 172 FCGCSIGAV--DGCLYVLGGFSRAL------AMRNVWRYDPVLNAWSEVSSMSVGRAYSK--IGI-LNNKLYAVGGVTRG 240 (474)
Q Consensus 172 r~~~~~~~~--~~~lyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~-~~~~lyv~GG~~~~ 240 (474)
+..++++++ +++||++||.+... ..+++++||+.+++|+.++.||.+|..++ +++ .+++|||+||..
T Consensus 186 ~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~-- 263 (656)
T 1k3i_A 186 IVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND-- 263 (656)
T ss_dssp SCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--
T ss_pred CCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC--
Confidence 444455555 99999999976421 34589999999999999999999887765 333 589999999975
Q ss_pred CCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccC-CCCcceeccceEEEc
Q 011957 241 PGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSL-YFWPFFVDVGGEVYD 318 (474)
Q Consensus 241 ~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~-~~~~~~~~~gg~~yd 318 (474)
..++++||+.+++|+++++|+.+|.. ++++++ +|+||++||. ++..... ..++||
T Consensus 264 ------~~~v~~yd~~t~~W~~~~~~~~~R~~---------------~s~~~~~dg~iyv~GG~~~~~~~~~--~~e~yd 320 (656)
T 1k3i_A 264 ------AKKTSLYDSSSDSWIPGPDMQVARGY---------------QSSATMSDGRVFTIGGSWSGGVFEK--NGEVYS 320 (656)
T ss_dssp ------TTCEEEEEGGGTEEEECCCCSSCCSS---------------CEEEECTTSCEEEECCCCCSSSCCC--CEEEEE
T ss_pred ------CCceEEecCcCCceeECCCCCccccc---------------cceEEecCCeEEEEeCcccCCcccc--cceEeC
Confidence 13799999999999999999999998 888888 9999999994 4433333 349999
Q ss_pred CCCCceEEcCC----CCCCCC-----------------------------------------------------CccccC
Q 011957 319 PDVNSWVEMPV----GMGEGW-----------------------------------------------------PVRQAG 341 (474)
Q Consensus 319 ~~t~~W~~~~~----~~~~~~-----------------------------------------------------p~~~~~ 341 (474)
+.+++|+.++. ++.... +..+..
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred CCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 99999999742 111100 000111
Q ss_pred cceEE---EECCEEEEEcCCCCC----CCc---eEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee-CCEEEEEecC
Q 011957 342 TKLSI---TVEGELYALDPSGAL----DSA---KIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL-LGKLHVITND 410 (474)
Q Consensus 342 ~~~~~---~~~~~lyv~GG~~~~----~~~---~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~ 410 (474)
+. ++ ..+++||++||.... ..+ .+++||+++++|.++. .+.++.+|..++++.+ +++|||+||.
T Consensus 401 ~~-av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~----~~~mp~~R~~~~~~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 401 GN-AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA----SNGLYFARTFHTSVVLPDGSTFITGGQ 475 (656)
T ss_dssp CE-EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC----TTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred Cc-eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc----cCCCCCCcccCCeEECCCCCEEEECCc
Confidence 22 33 258999999995321 123 7899999999999985 1245567888887777 9999999995
Q ss_pred C
Q 011957 411 A 411 (474)
Q Consensus 411 ~ 411 (474)
.
T Consensus 476 ~ 476 (656)
T 1k3i_A 476 R 476 (656)
T ss_dssp S
T ss_pred c
Confidence 4
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.76 E-value=1.3e-06 Score=87.60 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=40.4
Q ss_pred CCCCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhh
Q 011957 40 PRLIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFS 84 (474)
Q Consensus 40 ~~~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~ 84 (474)
...+..||+|++..||++|+..++.++..|||+|+.++.++.+.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~ 60 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhh
Confidence 346789999999999999999999999999999999998876654
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.74 E-value=8.8e-07 Score=88.68 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=37.5
Q ss_pred CCCCCcHH----HHHHhhhccCccchhhHHHhhHHHHHhhcCchhh
Q 011957 42 LIPSLPDE----ISLQILARIPRIYYLNVKLVSRAWKAAITSSELF 83 (474)
Q Consensus 42 ~~~~LPdd----l~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~ 83 (474)
.+..||+| |++.||++|+..+|.++.+|||+|+.++.++.+.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w 55 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLW 55 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHH
Confidence 45679999 9999999999999999999999999998776553
No 21
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.72 E-value=9e-09 Score=70.51 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=38.9
Q ss_pred CCCCCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhh
Q 011957 39 SPRLIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFS 84 (474)
Q Consensus 39 ~~~~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~ 84 (474)
.+..|..||+|++.+||++||..++.+++.|||+|+.++.++.+.+
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 3456889999999999999999999999999999999999887643
No 22
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.63 E-value=1.5e-08 Score=94.74 Aligned_cols=52 Identities=23% Similarity=0.520 Sum_probs=45.2
Q ss_pred CCCCCCCCCCcHHHHHHhhhccCccchh-hHHHhhHHHHHhhcCchhhhhhhh
Q 011957 37 DESPRLIPSLPDEISLQILARIPRIYYL-NVKLVSRAWKAAITSSELFSFRKE 88 (474)
Q Consensus 37 ~~~~~~~~~LPddl~~~il~rlp~~~~~-~~~~Vck~W~~li~s~~~~~~r~~ 88 (474)
++....+..||+||+++||++||.++|. ++++|||+|+.|+.++.|...+..
T Consensus 45 ~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~ 97 (297)
T 2e31_A 45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ 97 (297)
T ss_dssp --CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred cccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence 3445678999999999999999999999 999999999999999998766544
No 23
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.60 E-value=1.2e-05 Score=80.82 Aligned_cols=41 Identities=39% Similarity=0.481 Sum_probs=37.4
Q ss_pred CCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcC-chh
Q 011957 42 LIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITS-SEL 82 (474)
Q Consensus 42 ~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s-~~~ 82 (474)
.|..||+||+++||+.||..+|.++..|||+|+.++.+ +.+
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~ 55 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 55 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 46689999999999999999999999999999999987 544
No 24
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.12 E-value=0.00083 Score=60.97 Aligned_cols=193 Identities=16% Similarity=0.046 Sum_probs=119.9
Q ss_pred cceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEE
Q 011957 173 CGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 173 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
+-+.+...++.||+..|..+ .+.+.++|+.+++=..--+++..-.+.+++..+++||+.... .+.+.+
T Consensus 22 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~---------~~~v~v 89 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR---------NHEGFV 89 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS---------SSEEEE
T ss_pred ccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee---------CCEEEE
Confidence 34466677899999988654 368899999999866655666655677888899999998653 378999
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGM 331 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~ 331 (474)
||+++.+-. ..++.+..+ .+++.-+++||+.-| . -....+|+++.+=. .+....
T Consensus 90 ~D~~tl~~~--~ti~~~~~G---------------wglt~dg~~L~vSdg-s-------~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 90 YDLATLTPR--ARFRYPGEG---------------WALTSDDSHLYMSDG-T-------AVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EETTTTEEE--EEEECSSCC---------------CEEEECSSCEEEECS-S-------SEEEEECTTTCCEEEEEECEE
T ss_pred EECCcCcEE--EEEeCCCCc---------------eEEeeCCCEEEEECC-C-------CeEEEEeCCCCeEEEEEEEcc
Confidence 999876543 233333333 455666778999655 2 12378999987643 232211
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc---eEEeccCCCCCC---CCCCCCCeEEEee--CCE
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT---WKVVVGDVPLPN---FTDSESPYLLAGL--LGK 403 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~~---~~~~r~~~~~~~~--~~~ 403 (474)
. +.+....--+...+|+||+--- ..+.|.+.|+++++ |-.+.+..|... .+.....-+++.. +++
T Consensus 145 -~--g~~~~~lNeLe~~~G~lyanvw----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 145 -G--GRPLDNLNELEWVNGELLANVW----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp -T--TEECCCEEEEEEETTEEEEEET----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred -C--CcccccceeeEEeCCEEEEEEC----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 1 1111111114556899996542 35699999999985 334333222211 1111222445543 578
Q ss_pred EEEEec
Q 011957 404 LHVITN 409 (474)
Q Consensus 404 l~v~GG 409 (474)
|||.|-
T Consensus 218 lfVTGK 223 (243)
T 3mbr_X 218 LFVTGK 223 (243)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 998887
No 25
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.01 E-value=0.0049 Score=58.82 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=111.4
Q ss_pred eeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCce-eecCCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEE
Q 011957 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAW-SEVSSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 175 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
..++..++++|+.... .+.+.++|+.+.+- ..++....| ..++. -++++||.... ...+.+
T Consensus 47 ~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~~p---~~i~~~~~g~lyv~~~~---------~~~v~~ 109 (328)
T 3dsm_A 47 QSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFTSP---RYIHFLSDEKAYVTQIW---------DYRIFI 109 (328)
T ss_dssp EEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCSSE---EEEEEEETTEEEEEEBS---------CSEEEE
T ss_pred eEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCCCC---cEEEEeCCCeEEEEECC---------CCeEEE
Confidence 4556679999998642 46899999999875 335433333 33444 67899998753 267999
Q ss_pred EeCCCCceEEccCCCccccc-cccchhhccccccceeeEEEeCCEEEEecc-CCCCcceeccceEEEcCCCCceEEcCCC
Q 011957 253 FDPRTGLWSEILSMPFSKAQ-VLPTAFLADLLKPIATGMSSYRGRLFVPQS-LYFWPFFVDVGGEVYDPDVNSWVEMPVG 330 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG-~~~~~~~~~~gg~~yd~~t~~W~~~~~~ 330 (474)
+|+++++-...-+....... ..+ ..++..++++|+..- .. -...++|+++++....-.
T Consensus 110 iD~~t~~~~~~i~~g~~~~~~~~p------------~~i~~~~~~lyv~~~~~~-------~~v~viD~~t~~~~~~i~- 169 (328)
T 3dsm_A 110 INPKTYEITGYIECPDMDMESGST------------EQMVQYGKYVYVNCWSYQ-------NRILKIDTETDKVVDELT- 169 (328)
T ss_dssp EETTTTEEEEEEECTTCCTTTCBC------------CCEEEETTEEEEEECTTC-------CEEEEEETTTTEEEEEEE-
T ss_pred EECCCCeEEEEEEcCCccccCCCc------------ceEEEECCEEEEEcCCCC-------CEEEEEECCCCeEEEEEE-
Confidence 99998875422112210000 000 344557899999642 11 234799999987654221
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCC------CCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee--CC
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGAL------DSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL--LG 402 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~------~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~--~~ 402 (474)
.. ..+. ..++.-+|++|+....... ..+.|+++|+++.+....- .+|.+ .....++.. ++
T Consensus 170 ~g---~~p~---~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~~~~g-----~~p~~la~~~d~~ 237 (328)
T 3dsm_A 170 IG---IQPT---SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-KFKLG-----DWPSEVQLNGTRD 237 (328)
T ss_dssp CS---SCBC---CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-ECCTT-----CCCEEEEECTTSC
T ss_pred cC---CCcc---ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-ecCCC-----CCceeEEEecCCC
Confidence 11 1111 1144557899888542110 1368999999998765421 12221 123455544 56
Q ss_pred EEEEEecCCCCceeEEEEeec
Q 011957 403 KLHVITNDANHNIAVLQADVK 423 (474)
Q Consensus 403 ~l~v~GG~~~~~~~~~~~d~~ 423 (474)
.||+..+ .+..+|..
T Consensus 238 ~lyv~~~------~v~~~d~~ 252 (328)
T 3dsm_A 238 TLYWINN------DIWRMPVE 252 (328)
T ss_dssp EEEEESS------SEEEEETT
T ss_pred EEEEEcc------EEEEEECC
Confidence 7887654 45556643
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.93 E-value=0.0027 Score=58.15 Aligned_cols=191 Identities=14% Similarity=0.011 Sum_probs=114.3
Q ss_pred eeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEe
Q 011957 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 175 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
..+...++.||+..|..+ .+.+.++|+.|.+=..--+++..-.+.+++..+++||+.... .+.+.+||
T Consensus 46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~---------~~~v~v~D 113 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK---------NGLGFVWN 113 (262)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS---------SSEEEEEE
T ss_pred ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee---------CCEEEEEE
Confidence 445556899999988643 367899999999865444455444556678889999999653 26899999
Q ss_pred CCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCCCC
Q 011957 255 PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGMGE 333 (474)
Q Consensus 255 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~~~ 333 (474)
+++.+-.. .++.+..+ .+++.-++.+|+.-|.+ ....+|+++.+=. .++.. ..
T Consensus 114 ~~t~~~~~--ti~~~~eG---------------~glt~dg~~L~~SdGs~--------~i~~iDp~T~~v~~~I~V~-~~ 167 (262)
T 3nol_A 114 IRNLRQVR--SFNYDGEG---------------WGLTHNDQYLIMSDGTP--------VLRFLDPESLTPVRTITVT-AH 167 (262)
T ss_dssp TTTCCEEE--EEECSSCC---------------CCEEECSSCEEECCSSS--------EEEEECTTTCSEEEEEECE-ET
T ss_pred CccCcEEE--EEECCCCc---------------eEEecCCCEEEEECCCC--------eEEEEcCCCCeEEEEEEec-cC
Confidence 98876442 22222333 45566667888865421 2378999987643 33321 01
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceE---EeccCCCCC--CCCCCCCCeEEEee--CCEEEE
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWK---VVVGDVPLP--NFTDSESPYLLAGL--LGKLHV 406 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~---~v~~~~p~~--~~~~~r~~~~~~~~--~~~l~v 406 (474)
.++....--+...+|+||+--- ..+.|.+.|+++.+=. .+.+..|.. ..+.....-+++.. ++++||
T Consensus 168 --g~~~~~lNELe~~~G~lyan~w----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 168 --GEELPELNELEWVDGEIFANVW----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp --TEECCCEEEEEEETTEEEEEET----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred --CccccccceeEEECCEEEEEEc----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 1111110013456899997532 3569999999998643 332222211 11111223455543 578888
Q ss_pred Eec
Q 011957 407 ITN 409 (474)
Q Consensus 407 ~GG 409 (474)
.|-
T Consensus 242 TGK 244 (262)
T 3nol_A 242 TGK 244 (262)
T ss_dssp EET
T ss_pred ECC
Confidence 886
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.67 E-value=0.0018 Score=59.32 Aligned_cols=189 Identities=11% Similarity=-0.036 Sum_probs=111.8
Q ss_pred ceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEE
Q 011957 174 GCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 174 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
...+...++.||+..|..+ .+.++|+.|++=..-- ++..-.+.+++..+++||++... .+.+.+|
T Consensus 57 tqGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~---------~~~v~V~ 121 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT---------EGLLFTW 121 (268)
T ss_dssp EEEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS---------SCEEEEE
T ss_pred cceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc---------CCEEEEE
Confidence 3556667899999988643 3889999998744322 44433456678889999998653 2689999
Q ss_pred eCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCC
Q 011957 254 DPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMG 332 (474)
Q Consensus 254 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~ 332 (474)
|+++.+-. ..++.+..+ .+++.-+++||+.-|.+ ....+|+++.+=.. +....
T Consensus 122 D~~Tl~~~--~ti~~~~eG---------------wGLt~Dg~~L~vSdGs~--------~l~~iDp~T~~v~~~I~V~~- 175 (268)
T 3nok_A 122 SGMPPQRE--RTTRYSGEG---------------WGLCYWNGKLVRSDGGT--------MLTFHEPDGFALVGAVQVKL- 175 (268)
T ss_dssp ETTTTEEE--EEEECSSCC---------------CCEEEETTEEEEECSSS--------EEEEECTTTCCEEEEEECEE-
T ss_pred ECCcCcEE--EEEeCCCce---------------eEEecCCCEEEEECCCC--------EEEEEcCCCCeEEEEEEeCC-
Confidence 99886544 222222333 56666678899976522 23789999876443 32211
Q ss_pred CCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCce---EEeccCCCC-C--CCCCCCCCeEEEee--CCEE
Q 011957 333 EGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTW---KVVVGDVPL-P--NFTDSESPYLLAGL--LGKL 404 (474)
Q Consensus 333 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W---~~v~~~~p~-~--~~~~~r~~~~~~~~--~~~l 404 (474)
. +......--+...+|+||+--- ..+.|.+.|+++++= -.+.+..|. + ........-+++.. +++|
T Consensus 176 ~--g~~v~~lNeLe~~dG~lyanvw----~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 176 R--GQPVELINELECANGVIYANIW----HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp T--TEECCCEEEEEEETTEEEEEET----TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred C--CcccccccccEEeCCEEEEEEC----CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 1 1111111114456899996432 356999999999853 333221111 0 01111222345533 5788
Q ss_pred EEEec
Q 011957 405 HVITN 409 (474)
Q Consensus 405 ~v~GG 409 (474)
||.|-
T Consensus 250 fVTGK 254 (268)
T 3nok_A 250 FMTGK 254 (268)
T ss_dssp EEEET
T ss_pred EEeCC
Confidence 88776
No 28
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.60 E-value=0.039 Score=50.80 Aligned_cols=202 Identities=15% Similarity=0.061 Sum_probs=113.6
Q ss_pred eeEEEeC-CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEE
Q 011957 175 CSIGAVD-GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 175 ~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
+.++..+ +.||+..|..+ .+.+.++|+.|++=..--+++......+.+..+++||+..-. .+.+.+|
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~---------~~~v~vi 91 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL---------KNIGFIY 91 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT---------CSEEEEE
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec---------CCEEEEE
Confidence 4555554 89999876422 368999999999855433344333455677789999998653 3689999
Q ss_pred eCCCCceEEccCCCcc-ccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCC
Q 011957 254 DPRTGLWSEILSMPFS-KAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGM 331 (474)
Q Consensus 254 d~~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~ 331 (474)
|+++.+= +..++.+ ..+ .+++.-++++|+..| . -...++|+++.+=. .++...
T Consensus 92 D~~t~~v--~~~i~~g~~~g---------------~glt~Dg~~l~vs~g-s-------~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 92 DRRTLSN--IKNFTHQMKDG---------------WGLATDGKILYGSDG-T-------SILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp ETTTTEE--EEEEECCSSSC---------------CEEEECSSSEEEECS-S-------SEEEEECTTTCCEEEEEECEE
T ss_pred ECCCCcE--EEEEECCCCCe---------------EEEEECCCEEEEECC-C-------CeEEEEECCCCcEEEEEEECC
Confidence 9987643 3333322 222 344444677898654 2 12378999886633 333211
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceE---EeccCCCC---CCCCCCCCCeEEEee--CCE
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWK---VVVGDVPL---PNFTDSESPYLLAGL--LGK 403 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~---~v~~~~p~---~~~~~~r~~~~~~~~--~~~ 403 (474)
. +.+....-.+...+++||+--. ..+.|.+.|+++++=. .+.+..+. ...+..-...+++.. +++
T Consensus 147 -~--~~p~~~~nele~~dg~lyvn~~----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~ 219 (266)
T 2iwa_A 147 -N--GHRVIRLNELEYINGEVWANIW----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR 219 (266)
T ss_dssp -T--TEECCCEEEEEEETTEEEEEET----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred -C--CcccccceeEEEECCEEEEecC----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence 0 1111000113445889997643 3468999999987532 22211000 000111122455544 457
Q ss_pred EEEEecCCCCceeEEEEe
Q 011957 404 LHVITNDANHNIAVLQAD 421 (474)
Q Consensus 404 l~v~GG~~~~~~~~~~~d 421 (474)
+||.|+ ..+.+.+..+.
T Consensus 220 lfVTgk-~~~~v~~i~l~ 236 (266)
T 2iwa_A 220 IFVTGK-LWPKLFEIKLH 236 (266)
T ss_dssp EEEEET-TCSEEEEEEEE
T ss_pred EEEECC-CCCeEEEEEEe
Confidence 888877 44555554443
No 29
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.60 E-value=0.026 Score=53.67 Aligned_cols=143 Identities=12% Similarity=-0.028 Sum_probs=89.4
Q ss_pred cceEEEEeCCCCceeec-----CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce-EEccCCCcc
Q 011957 196 MRNVWRYDPVLNAWSEV-----SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW-SEILSMPFS 269 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~-----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~ 269 (474)
...+.+||+.|++...- ...+.+.....++..++++|+.... ...+.++|+++.+- ..++....|
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~---------~~~v~viD~~t~~~~~~i~~~~~p 86 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN---------SHVIFAIDINTFKEVGRITGFTSP 86 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG---------GTEEEEEETTTCCEEEEEECCSSE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC---------CCEEEEEECcccEEEEEcCCCCCC
Confidence 57899999999987642 1223334445667789999998763 26799999998876 344433322
Q ss_pred ccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCCCCCccccCcceEEE
Q 011957 270 KAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGEGWPVRQAGTKLSIT 347 (474)
Q Consensus 270 r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~~~p~~~~~~~~~~~ 347 (474)
..++. .++++|+..... -...++|+++++-.. ++.+...+-.....+ ++.
T Consensus 87 ------------------~~i~~~~~g~lyv~~~~~-------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~---i~~ 138 (328)
T 3dsm_A 87 ------------------RYIHFLSDEKAYVTQIWD-------YRIFIINPKTYEITGYIECPDMDMESGSTEQ---MVQ 138 (328)
T ss_dssp ------------------EEEEEEETTEEEEEEBSC-------SEEEEEETTTTEEEEEEECTTCCTTTCBCCC---EEE
T ss_pred ------------------cEEEEeCCCeEEEEECCC-------CeEEEEECCCCeEEEEEEcCCccccCCCcce---EEE
Confidence 33344 688999965322 234789999887542 332110000001112 455
Q ss_pred ECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 348 VEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 348 ~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
.+++||+..-. ..+.|.++|+++++...
T Consensus 139 ~~~~lyv~~~~---~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 139 YGKYVYVNCWS---YQNRILKIDTETDKVVD 166 (328)
T ss_dssp ETTEEEEEECT---TCCEEEEEETTTTEEEE
T ss_pred ECCEEEEEcCC---CCCEEEEEECCCCeEEE
Confidence 89999998521 13589999999987554
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.39 E-value=0.06 Score=51.90 Aligned_cols=168 Identities=16% Similarity=0.117 Sum_probs=97.5
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCc--------ceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGR--------AYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
.+..++.||+. .. ...+..||+.+.+ |+.-...+... .....+..++.||+.+.
T Consensus 184 ~~~~~~~v~~g-~~-----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~---------- 247 (376)
T 3q7m_A 184 PTTAFGAAVVG-GD-----NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY---------- 247 (376)
T ss_dssp CEEETTEEEEC-CT-----TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----------
T ss_pred cEEECCEEEEE-cC-----CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----------
Confidence 34457887773 21 2468999998765 76543322111 22344566889888652
Q ss_pred CceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc-
Q 011957 247 LQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS- 323 (474)
Q Consensus 247 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~- 323 (474)
...+.++|+.+++ |+.-. +. . ...+..++.||+.... -+..+||+.+++
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~--~~---~---------------~~~~~~~~~l~~~~~~--------g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKREL--GS---V---------------NDFIVDGNRIYLVDQN--------DRVMALTIDGGVT 299 (376)
T ss_dssp TSCEEEEETTTCCEEEEECC--CC---E---------------EEEEEETTEEEEEETT--------CCEEEEETTTCCE
T ss_pred CcEEEEEECCCCcEEeeccC--CC---C---------------CCceEECCEEEEEcCC--------CeEEEEECCCCcE
Confidence 1368899998764 76432 11 1 3446678999996431 134789998876
Q ss_pred -eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc--eEEeccCCCCCCCCCCCCCeEEEee
Q 011957 324 -WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT--WKVVVGDVPLPNFTDSESPYLLAGL 400 (474)
Q Consensus 324 -W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~~~~p~~~~~~~r~~~~~~~~ 400 (474)
|+.-.. . ..... . .+..++.||+... ...+++||+++.+ |+.-. + ........+..
T Consensus 300 ~w~~~~~--~----~~~~~-~-~~~~~~~l~v~~~-----~g~l~~~d~~tG~~~~~~~~---~-----~~~~~~~~~~~ 358 (376)
T 3q7m_A 300 LWTQSDL--L----HRLLT-S-PVLYNGNLVVGDS-----EGYLHWINVEDGRFVAQQKV---D-----SSGFQTEPVAA 358 (376)
T ss_dssp EEEECTT--T----TSCCC-C-CEEETTEEEEECT-----TSEEEEEETTTCCEEEEEEC---C-----TTCBCSCCEEE
T ss_pred EEeeccc--C----CCccc-C-CEEECCEEEEEeC-----CCeEEEEECCCCcEEEEEec---C-----CCcceeCCEEE
Confidence 876421 1 11111 1 4567899998753 3579999998875 65421 0 01111234456
Q ss_pred CCEEEEEec
Q 011957 401 LGKLHVITN 409 (474)
Q Consensus 401 ~~~l~v~GG 409 (474)
+++||+...
T Consensus 359 ~~~l~v~~~ 367 (376)
T 3q7m_A 359 DGKLLIQAK 367 (376)
T ss_dssp TTEEEEEBT
T ss_pred CCEEEEEeC
Confidence 888888543
No 31
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.27 E-value=0.081 Score=50.95 Aligned_cols=153 Identities=10% Similarity=0.091 Sum_probs=90.9
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCC-------CCcceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMS-------VGRAYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p-------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
+.++.++.||+... ...++.||+.+.+ |+.-.... ........+..+++||+...
T Consensus 48 ~p~v~~~~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------- 111 (376)
T 3q7m_A 48 HPALADNVVYAADR------AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---------- 111 (376)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET----------
T ss_pred ccEEECCEEEEEcC------CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC----------
Confidence 44567999999753 2478999998765 76543211 12233445667899998643
Q ss_pred CceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc-
Q 011957 247 LQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS- 323 (474)
Q Consensus 247 ~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~- 323 (474)
...+.+||.++++ |+.-.. .... ...+..++.+|+... + -...+||+++++
T Consensus 112 ~g~l~a~d~~tG~~~W~~~~~--~~~~----------------~~p~~~~~~v~v~~~-~-------g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 112 KAQVYALNTSDGTVAWQTKVA--GEAL----------------SRPVVSDGLVLIHTS-N-------GQLQALNEADGAV 165 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECS--SCCC----------------SCCEEETTEEEEECT-T-------SEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCEEEEEeCC--CceE----------------cCCEEECCEEEEEcC-C-------CeEEEEECCCCcE
Confidence 1478999998775 765322 1111 233556888888442 1 224789998876
Q ss_pred -eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEEe
Q 011957 324 -WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKVV 379 (474)
Q Consensus 324 -W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~v 379 (474)
|+.-..... ....+....++.++.+|+... ...+..||+++. .|+.-
T Consensus 166 ~W~~~~~~~~----~~~~~~~~~~~~~~~v~~g~~-----~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 166 KWTVNLDMPS----LSLRGESAPTTAFGAAVVGGD-----NGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp EEEEECCC---------CCCCCCEEETTEEEECCT-----TTEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCCc----eeecCCCCcEEECCEEEEEcC-----CCEEEEEECCCCcEEEEEe
Confidence 886543111 001111224556888777422 357999999866 57653
No 32
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.12 E-value=0.093 Score=47.56 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=90.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++.||+... ...+.+||+.++....+..... ..-..++.. +++||+.... ...+.+||..+..
T Consensus 77 ~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 77 AGTVYVTDF------NNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRG---------NNRVVKLAAGSKT 140 (270)
T ss_dssp TCCEEEEET------TTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGG---------GTEEEEECTTCCS
T ss_pred CCCEEEEcC------CCEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEEEEECC---------CCEEEEEECCCce
Confidence 567888754 2478999998876544432111 112233333 5789987543 2468888877665
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVR 338 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~ 338 (474)
......... .. + .+++.. +|++|+..... -...+||+.+..-..... .. ...+
T Consensus 141 ~~~~~~~~~--~~--p------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~~~~~~~~~~-~~--~~~p 194 (270)
T 1rwi_B 141 QTVLPFTGL--ND--P------------DGVAVDNSGNVYVTDTDN-------NRVVKLEAESNNQVVLPF-TD--ITAP 194 (270)
T ss_dssp CEECCCCSC--CS--C------------CCEEECTTCCEEEEEGGG-------TEEEEECTTTCCEEECCC-SS--CCSE
T ss_pred eEeeccccC--CC--c------------eeEEEeCCCCEEEEECCC-------CEEEEEecCCCceEeecc-cC--CCCc
Confidence 543321110 01 0 233333 67899864322 234789988776444322 10 0011
Q ss_pred ccCcceEEE-ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEec
Q 011957 339 QAGTKLSIT-VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVITN 409 (474)
Q Consensus 339 ~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG 409 (474)
.. ++. -+|.||+.... .+.|.+||+.+..-..+. .. ......+++. -+++|||...
T Consensus 195 ---~~-i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~----~~---~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 195 ---WG-IAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLP----FT---GLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp ---EE-EEECTTCCEEEEETT----TSCEEEECTTCSCCEECC----CC---SCSCEEEEEECTTCCEEEEEG
T ss_pred ---eE-EEECCCCCEEEEECC----CCcEEEEcCCCCcceeec----cC---CCCCceeEEECCCCCEEEEEC
Confidence 11 333 35689988642 357999999876433321 11 1112234443 3567888765
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.02 E-value=0.014 Score=56.49 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=79.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+..||+.++.+ ..+.+||+.+++-...-.... .-..++.. +..||+.+.. ...+.+||+.++
T Consensus 43 g~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~---------~~~v~v~d~~~~ 106 (391)
T 1l0q_A 43 GTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMA---------SSTLSVIDTTSN 106 (391)
T ss_dssp SSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETT---------TTEEEEEETTTT
T ss_pred CCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECC---------CCEEEEEECCCC
Confidence 34677776543 578999998887544322222 12222222 4457776543 257999999988
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEEe-CC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
+-...-..... - .+++.. ++ .+|+.++.++ ...+||+.+++....-. ...
T Consensus 107 ~~~~~~~~~~~--~---------------~~~~~s~dg~~l~~~~~~~~-------~v~~~d~~~~~~~~~~~-~~~--- 158 (391)
T 1l0q_A 107 TVAGTVKTGKS--P---------------LGLALSPDGKKLYVTNNGDK-------TVSVINTVTKAVINTVS-VGR--- 158 (391)
T ss_dssp EEEEEEECSSS--E---------------EEEEECTTSSEEEEEETTTT-------EEEEEETTTTEEEEEEE-CCS---
T ss_pred eEEEEEeCCCC--c---------------ceEEECCCCCEEEEEeCCCC-------EEEEEECCCCcEEEEEe-cCC---
Confidence 65433222111 1 233332 34 5777665442 34788988877654322 110
Q ss_pred ccccCcceEEEECC-EEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 337 VRQAGTKLSITVEG-ELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 337 ~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
.. ...+..-++ .||+.++. .+.+..||+.+++-..
T Consensus 159 ~~---~~~~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 159 SP---KGIAVTPDGTKVYVANFD----SMSISVIDTVTNSVID 194 (391)
T ss_dssp SE---EEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEE
T ss_pred Cc---ceEEECCCCCEEEEEeCC----CCEEEEEECCCCeEEE
Confidence 01 111222234 56676653 3579999998876544
No 34
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.00015 Score=66.91 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=41.1
Q ss_pred CCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCchhhhhhh
Q 011957 42 LIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSELFSFRK 87 (474)
Q Consensus 42 ~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~~~~~r~ 87 (474)
.|..||+||++.||+.|+.++++++..|||+||.+..++.+.+...
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l 49 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFL 49 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3567999999999999999999999999999999999988765543
No 35
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.93 E-value=0.02 Score=51.77 Aligned_cols=119 Identities=23% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCCcce--eeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE
Q 011957 215 MSVGRAY--SKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS 292 (474)
Q Consensus 215 ~p~~r~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~ 292 (474)
.|..... .++...++.||+..|.. + .+.+.++|+++++=..--+++....+ .+++.
T Consensus 15 ~phd~~~ftqGL~~~~~~LyestG~~----g---~S~v~~vD~~tgkv~~~~~l~~~~fg---------------eGi~~ 72 (243)
T 3mbr_X 15 YPHDTTAFTEGLFYLRGHLYESTGET----G---RSSVRKVDLETGRILQRAEVPPPYFG---------------AGIVA 72 (243)
T ss_dssp EECCTTCCEEEEEEETTEEEEEECCT----T---SCEEEEEETTTCCEEEEEECCTTCCE---------------EEEEE
T ss_pred cCCCCccccccEEEECCEEEEECCCC----C---CceEEEEECCCCCEEEEEeCCCCcce---------------eEEEE
Confidence 3444433 46777899999998853 1 36899999999987765555544443 67788
Q ss_pred eCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEEC
Q 011957 293 YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDY 371 (474)
Q Consensus 293 ~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~ 371 (474)
.+++||+..... --+.+||+++.+=. +++. + ..+.+ ++..+++||+..| .+.|..+|+
T Consensus 73 ~~~~ly~ltw~~-------~~v~v~D~~tl~~~~ti~~------~--~~Gwg-lt~dg~~L~vSdg-----s~~l~~iDp 131 (243)
T 3mbr_X 73 WRDRLIQLTWRN-------HEGFVYDLATLTPRARFRY------P--GEGWA-LTSDDSHLYMSDG-----TAVIRKLDP 131 (243)
T ss_dssp ETTEEEEEESSS-------SEEEEEETTTTEEEEEEEC------S--SCCCE-EEECSSCEEEECS-----SSEEEEECT
T ss_pred eCCEEEEEEeeC-------CEEEEEECCcCcEEEEEeC------C--CCceE-EeeCCCEEEEECC-----CCeEEEEeC
Confidence 899999976433 23489999886543 2332 1 13333 5666778999876 358999999
Q ss_pred CCCce
Q 011957 372 HDDTW 376 (474)
Q Consensus 372 ~~~~W 376 (474)
++.+-
T Consensus 132 ~t~~~ 136 (243)
T 3mbr_X 132 DTLQQ 136 (243)
T ss_dssp TTCCE
T ss_pred CCCeE
Confidence 99754
No 36
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.59 E-value=0.072 Score=48.74 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=71.6
Q ss_pred cceeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEE
Q 011957 173 CGCSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 173 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++..++..+++||+.... .+.+++||+.+.+-.. ..+.+-.+.+++.-+++||+.-| .+.+..
T Consensus 97 FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdG----------s~~l~~ 159 (268)
T 3nok_A 97 FAEGLASDGERLYQLTWT-----EGLLFTWSGMPPQRER--TTRYSGEGWGLCYWNGKLVRSDG----------GTMLTF 159 (268)
T ss_dssp CEEEEEECSSCEEEEESS-----SCEEEEEETTTTEEEE--EEECSSCCCCEEEETTEEEEECS----------SSEEEE
T ss_pred ceeEEEEeCCEEEEEEcc-----CCEEEEEECCcCcEEE--EEeCCCceeEEecCCCEEEEECC----------CCEEEE
Confidence 345577788999998542 4689999999876432 22223345677777899999865 268999
Q ss_pred EeCCCCceEE-cc--CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 253 FDPRTGLWSE-IL--SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 253 yd~~t~~W~~-~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
+|+++.+-.. +. .-+.+... ...+...+|+||+---.. -...+.|+++++=
T Consensus 160 iDp~T~~v~~~I~V~~~g~~v~~--------------lNeLe~~dG~lyanvw~s-------~~I~vIDp~TG~V 213 (268)
T 3nok_A 160 HEPDGFALVGAVQVKLRGQPVEL--------------INELECANGVIYANIWHS-------SDVLEIDPATGTV 213 (268)
T ss_dssp ECTTTCCEEEEEECEETTEECCC--------------EEEEEEETTEEEEEETTC-------SEEEEECTTTCBE
T ss_pred EcCCCCeEEEEEEeCCCCccccc--------------ccccEEeCCEEEEEECCC-------CeEEEEeCCCCcE
Confidence 9999976442 21 11222111 023445589999732111 2237899998863
No 37
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.53 E-value=0.033 Score=50.94 Aligned_cols=123 Identities=15% Similarity=0.056 Sum_probs=79.8
Q ss_pred ecCCCCCCcce--eeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhcccccccee
Q 011957 211 EVSSMSVGRAY--SKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIAT 288 (474)
Q Consensus 211 ~~~~~p~~r~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 288 (474)
.+...|..+.. .++...++.||+..|.. + .+.+.++|+++++=..--+++....+ .
T Consensus 33 vv~~~phd~~~ftqGL~~~~~~LyestG~~----g---~S~v~~vD~~Tgkv~~~~~l~~~~Fg---------------e 90 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYRNGYFYESTGLN----G---RSSIRKVDIESGKTLQQIELGKRYFG---------------E 90 (262)
T ss_dssp EEEEEECCTTCEEEEEEEETTEEEEEEEET----T---EEEEEEECTTTCCEEEEEECCTTCCE---------------E
T ss_pred EEEEecCCCCcccceEEEECCEEEEECCCC----C---CceEEEEECCCCcEEEEEecCCccce---------------e
Confidence 33333443333 45556689999999853 1 25789999999986654445433222 5
Q ss_pred eEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEE
Q 011957 289 GMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIK 367 (474)
Q Consensus 289 ~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~ 367 (474)
+++..+++||+..... --+.+||+++.+=. +++. + ..+.+ ++.-+++||+..| .+.++
T Consensus 91 Git~~g~~ly~ltw~~-------~~v~v~D~~t~~~~~ti~~------~--~eG~g-lt~dg~~L~~SdG-----s~~i~ 149 (262)
T 3nol_A 91 GISDWKDKIVGLTWKN-------GLGFVWNIRNLRQVRSFNY------D--GEGWG-LTHNDQYLIMSDG-----TPVLR 149 (262)
T ss_dssp EEEEETTEEEEEESSS-------SEEEEEETTTCCEEEEEEC------S--SCCCC-EEECSSCEEECCS-----SSEEE
T ss_pred EEEEeCCEEEEEEeeC-------CEEEEEECccCcEEEEEEC------C--CCceE-EecCCCEEEEECC-----CCeEE
Confidence 6788899999975433 23489999887644 3332 1 12333 5666777888765 35899
Q ss_pred EEECCCCce
Q 011957 368 VYDYHDDTW 376 (474)
Q Consensus 368 ~yd~~~~~W 376 (474)
.+|+++.+-
T Consensus 150 ~iDp~T~~v 158 (262)
T 3nol_A 150 FLDPESLTP 158 (262)
T ss_dssp EECTTTCSE
T ss_pred EEcCCCCeE
Confidence 999998753
No 38
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.53 E-value=0.00082 Score=64.35 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=37.7
Q ss_pred CCCCCCCCcHHHHHHhhhccCccchhhHHHhhHHHHHhhcCch
Q 011957 39 SPRLIPSLPDEISLQILARIPRIYYLNVKLVSRAWKAAITSSE 81 (474)
Q Consensus 39 ~~~~~~~LPddl~~~il~rlp~~~~~~~~~Vck~W~~li~s~~ 81 (474)
.+..|..||||++.+||.+|+..++.+++.|||+|+.+..++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 3457889999999999999999999999999999999986654
No 39
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.44 E-value=0.34 Score=47.45 Aligned_cols=194 Identities=11% Similarity=-0.022 Sum_probs=100.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CC-EEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NN-KLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+|+.+++++.+.. ...++++|+.+.+...+...+. ...+.+.. ++ +|++.+..+ ....+++||+.+.
T Consensus 189 dg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~-------g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 189 DGSKLAYVTFESG--RSALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKT-------GSLNLYVMDLASG 257 (415)
T ss_dssp TSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTC
T ss_pred CCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecC-------CCceEEEEECCCC
Confidence 4544444443321 3689999999988776654332 11122222 44 455454321 1357999999998
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccC-CCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSL-YFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~-~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
+...+....... ...+ .-+|+..++++. .+. ...+.+|..+++-..+....
T Consensus 258 ~~~~l~~~~~~~-----------------~~~~~spdg~~l~~~s~~~g~-----~~i~~~d~~~~~~~~l~~~~----- 310 (415)
T 2hqs_A 258 QIRQVTDGRSNN-----------------TEPTWFPDSQNLAFTSDQAGR-----PQVYKVNINGGAPQRITWEG----- 310 (415)
T ss_dssp CEEECCCCSSCE-----------------EEEEECTTSSEEEEEECTTSS-----CEEEEEETTSSCCEECCCSS-----
T ss_pred CEEeCcCCCCcc-----------------cceEECCCCCEEEEEECCCCC-----cEEEEEECCCCCEEEEecCC-----
Confidence 876664432111 1222 235553333322 211 22367788887755544311
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCcee
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIA 416 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~ 416 (474)
... ...+..-+++.+++++... ....|+.+|+++.+...+... .........-+++.+++++..++...
T Consensus 311 -~~~-~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~~~~l~~~--------~~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 311 -SQN-QDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLSST--------FLDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp -SEE-EEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEECCCS--------SSCEEEEECTTSSEEEEEEEETTEEE
T ss_pred -Ccc-cCeEECCCCCEEEEEECcC-CceEEEEEECCCCCEEEecCC--------CCcCCeEEcCCCCEEEEEEcCCCccE
Confidence 111 1112334566555544221 135899999999888765421 11112233456777777775555445
Q ss_pred EEEEeec
Q 011957 417 VLQADVK 423 (474)
Q Consensus 417 ~~~~d~~ 423 (474)
+..+|+.
T Consensus 380 l~~~d~~ 386 (415)
T 2hqs_A 380 LNLVSTD 386 (415)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6566543
No 40
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.40 E-value=0.64 Score=43.56 Aligned_cols=154 Identities=12% Similarity=-0.021 Sum_probs=76.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC--------cceeeEEEE--CCEEEEEeceecCCCCCccCceE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG--------RAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSA 250 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--------r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 250 (474)
++.+|+.+.. .+.+++||+.+.+-...-+.+.. ..-..++.. ++.+|+.+... ...+
T Consensus 100 g~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~i 166 (353)
T 3vgz_A 100 TQTLWFGNTV-----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--------ESVI 166 (353)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--------SCEE
T ss_pred CCEEEEEecC-----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--------CceE
Confidence 4568887653 24799999998874322111111 111223332 45688776321 2579
Q ss_pred EEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eC-CEEEEeccCCCCcceeccceEEEcCCCCceEEcC
Q 011957 251 EVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YR-GRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 251 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~ 328 (474)
.+||+.+.+-...-+...... .+++. -+ +.+|+... + -...+||+.+++-....
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~-~-------~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMS----------------TGLALDSEGKRLYTTNA-D-------GELITIDTADNKILSRK 222 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTC----------------CCCEEETTTTEEEEECT-T-------SEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCceEEEecCCCCcc----------------ceEEECCCCCEEEEEcC-C-------CeEEEEECCCCeEEEEE
Confidence 999998775433222111100 22222 23 45676543 2 12368898877533221
Q ss_pred CCCCCCCCccccCcceEEE-E-CCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 329 VGMGEGWPVRQAGTKLSIT-V-EGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~-~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
. ... .........++. - ++.+|+... ..+.+.+||+++.+-..
T Consensus 223 ~-~~~--~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 223 K-LLD--DGKEHFFINISLDTARQRAFITDS----KAAEVLVVDTRNGNILA 267 (353)
T ss_dssp E-CCC--SSSCCCEEEEEEETTTTEEEEEES----SSSEEEEEETTTCCEEE
T ss_pred E-cCC--CCCCcccceEEECCCCCEEEEEeC----CCCEEEEEECCCCcEEE
Confidence 1 100 001111111222 2 455777653 23689999998876544
No 41
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.38 E-value=0.13 Score=50.29 Aligned_cols=154 Identities=10% Similarity=0.020 Sum_probs=82.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC---CCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS---VGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
++.+++.++.+ ..+.+||+.+.+.....+.. ........+.+ ++++|+.++.+ ..+.+||+
T Consensus 133 ~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d---------~~v~~~d~ 198 (433)
T 3bws_A 133 NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA---------NAVHVFDL 198 (433)
T ss_dssp SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG---------TEEEEEET
T ss_pred CCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC---------CEEEEEEC
Confidence 77888887643 45899999988766543321 11112222333 68888888743 57899999
Q ss_pred CCCceEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 256 RTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 256 ~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
.+.+-...-... .... .+++.. +..+|+.++.++ ...+||+.+++....-. ..
T Consensus 199 ~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~l~~~~~~~~-------~i~~~d~~~~~~~~~~~-~~- 253 (433)
T 3bws_A 199 KTLAYKATVDLT--GKWS--------------KILLYDPIRDLVYCSNWISE-------DISVIDRKTKLEIRKTD-KI- 253 (433)
T ss_dssp TTCCEEEEEECS--SSSE--------------EEEEEETTTTEEEEEETTTT-------EEEEEETTTTEEEEECC-CC-
T ss_pred CCceEEEEEcCC--CCCe--------------eEEEEcCCCCEEEEEecCCC-------cEEEEECCCCcEEEEec-CC-
Confidence 876543221111 1110 222322 345777654332 23789998876654332 11
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCC----CCceEEEEECCCCceEE
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGAL----DSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~----~~~~v~~yd~~~~~W~~ 378 (474)
... ...+..-+++.+++++.... ..+.|..||+.+.+-..
T Consensus 254 ---~~~--~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 254 ---GLP--RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp ---SEE--EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred ---CCc--eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 111 11122234544444432111 24589999998875443
No 42
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.29 E-value=0.087 Score=49.90 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=39.5
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcce-eeEEEE-C-CEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAY-SKIGIL-N-NKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
-+|+||+.+... ....+++||+.+.+++.+......... ..++.. + ..||+.+.. ...+.+||..
T Consensus 49 pdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~---------~~~v~v~~~~ 116 (347)
T 3hfq_A 49 AKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH---------KGTAEVMKIA 116 (347)
T ss_dssp TTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT---------TTEEEEEEEC
T ss_pred cCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC---------CCEEEEEEeC
Confidence 367788775321 136789999988887766542221111 223333 3 457776532 2467788874
Q ss_pred -CCceEEc
Q 011957 257 -TGLWSEI 263 (474)
Q Consensus 257 -t~~W~~~ 263 (474)
+...+.+
T Consensus 117 ~~g~~~~~ 124 (347)
T 3hfq_A 117 ADGALTLT 124 (347)
T ss_dssp TTSCEEEE
T ss_pred CCCCeeec
Confidence 3344433
No 43
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.28 E-value=0.072 Score=51.31 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=79.5
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+.+|+.|+.+ +.+.+||..+++-...-.... .-.+++.. +..||+.++.+ ..+.+||..+++
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d---------~~i~v~d~~~~~ 65 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHS---------NDVSIIDTATNN 65 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGG---------TEEEEEETTTTE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEECCCC---------CeEEEEECCCCe
Confidence 4577777643 578999998876443221111 11223322 34677877643 579999998887
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEe-CC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
-...-..+... .+++.. ++ .||+.+..+ -...+||+.+++-...-. .. .
T Consensus 66 ~~~~~~~~~~v-----------------~~~~~spdg~~l~~~~~~~-------~~v~v~d~~~~~~~~~~~-~~----~ 116 (391)
T 1l0q_A 66 VIATVPAGSSP-----------------QGVAVSPDGKQVYVTNMAS-------STLSVIDTTSNTVAGTVK-TG----K 116 (391)
T ss_dssp EEEEEECSSSE-----------------EEEEECTTSSEEEEEETTT-------TEEEEEETTTTEEEEEEE-CS----S
T ss_pred EEEEEECCCCc-----------------cceEECCCCCEEEEEECCC-------CEEEEEECCCCeEEEEEe-CC----C
Confidence 55432222211 233332 33 466655432 234789998886544322 11 0
Q ss_pred cccCcceEEEECC-EEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 338 RQAGTKLSITVEG-ELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 338 ~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.. ...+..-++ .||+.++. .+.|..||+.+.+....
T Consensus 117 ~~--~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 117 SP--LGLALSPDGKKLYVTNNG----DKTVSVINTVTKAVINT 153 (391)
T ss_dssp SE--EEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEE
T ss_pred Cc--ceEEECCCCCEEEEEeCC----CCEEEEEECCCCcEEEE
Confidence 11 111222244 46677653 35899999988865543
No 44
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=0.15 Score=54.69 Aligned_cols=151 Identities=11% Similarity=0.118 Sum_probs=88.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC---CCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS---VGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
++.||+... .-+++||+.+++|+.....+ ........... ++.|++..- . .-+.+||+
T Consensus 460 ~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~---------~Gl~~~~~ 522 (781)
T 3v9f_A 460 NKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-G---------GGVGIYTP 522 (781)
T ss_dssp TSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-S---------SCEEEECT
T ss_pred CCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-C---------CCEEEEeC
Confidence 678887531 45899999999987764322 11111112222 567776432 1 24788999
Q ss_pred CCCceEEccCCC-ccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccce-EEEcCCCCceEEcCCCCC
Q 011957 256 RTGLWSEILSMP-FSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGG-EVYDPDVNSWVEMPVGMG 332 (474)
Q Consensus 256 ~t~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg-~~yd~~t~~W~~~~~~~~ 332 (474)
.+++++...... .+... ..++.. -+|.|++... .|. .+||+.+++++.... .
T Consensus 523 ~~~~~~~~~~~~~l~~~~--------------i~~i~~d~~g~lWi~T~---------~Glv~~~d~~~~~~~~~~~--~ 577 (781)
T 3v9f_A 523 DMQLVRKFNQYEGFCSNT--------------INQIYRSSKGQMWLATG---------EGLVCFPSARNFDYQVFQR--K 577 (781)
T ss_dssp TCCEEEEECTTTTCSCSC--------------EEEEEECTTSCEEEEET---------TEEEEESCTTTCCCEEECG--G
T ss_pred CCCeEEEccCCCCCCCCe--------------eEEEEECCCCCEEEEEC---------CCceEEECCCCCcEEEccc--c
Confidence 999888765311 00111 023232 3678888432 355 789999999887653 2
Q ss_pred CCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 333 EGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 333 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.++|..... +.+..-+|.|++.+. +.+.+||+++.+++...
T Consensus 578 ~gl~~~~i~-~i~~d~~g~lW~~t~------~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 578 EGLPNTHIR-AISEDKNGNIWASTN------TGISCYITSKKCFYTYD 618 (781)
T ss_dssp GTCSCCCCC-EEEECSSSCEEEECS------SCEEEEETTTTEEEEEC
T ss_pred CCCCCceEE-EEEECCCCCEEEEcC------CceEEEECCCCceEEec
Confidence 233333222 212233678888753 46899999999988874
No 45
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.12 E-value=0.77 Score=41.77 Aligned_cols=173 Identities=10% Similarity=0.018 Sum_probs=90.4
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC-CCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS-VGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
-++.||+.... ...+++||+. .+.+... ++ ....-..++.. +++||+.... ...+.+||+ +
T Consensus 66 ~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~d~-~ 128 (299)
T 2z2n_A 66 SDGEVWFTENA-----ANKIGRITKK-GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMN---------GNRIGRITD-D 128 (299)
T ss_dssp TTSCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-T
T ss_pred CCCCEEEeCCC-----CCeEEEECCC-CcEEEEe-CCCcCCCceeeEECCCCCEEEEecC---------CceEEEECC-C
Confidence 36788887532 2468899986 4554443 22 11222333333 5789887542 246889998 6
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
++...... +..... ..+++.. ++++|+..... -+..+||+ +++...+...... .
T Consensus 129 g~~~~~~~-~~~~~~--------------~~~i~~~~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~--~ 183 (299)
T 2z2n_A 129 GKIREYEL-PNKGSY--------------PSFITLGSDNALWFTENQN-------NAIGRITE-SGDITEFKIPTPA--S 183 (299)
T ss_dssp CCEEEEEC-SSTTCC--------------EEEEEECTTSCEEEEETTT-------TEEEEECT-TCCEEEEECSSTT--C
T ss_pred CCEEEecC-CCCCCC--------------CceEEEcCCCCEEEEeCCC-------CEEEEEcC-CCcEEEeeCCCCC--C
Confidence 66654421 111111 0333333 67899854211 23478999 7777765321110 1
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEe
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVIT 408 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~G 408 (474)
.+ ...+..-+++||+.... .+.+.+||+ +++...+. .+. ......+++. -+++||+..
T Consensus 184 ~~---~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~--~~~----~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 184 GP---VGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK--IPT----PNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp CE---EEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE--CSS----TTCCEEEEEECSTTCEEEEE
T ss_pred cc---eeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE--CCC----CCCCceeEEECCCCCEEEec
Confidence 11 11122335789887532 357999999 77776653 111 1112234443 356787764
No 46
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=96.08 E-value=0.19 Score=44.19 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=79.7
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceee--c----CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccC
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSE--V----SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPL 247 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 247 (474)
+++..+|++|+|=| ..+|+++.....+.. + +.+|. ... ++... ++++|+|-|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG----------- 87 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG----------- 87 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-----------
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-----------
Confidence 34457999999976 467888765433321 1 23442 122 22223 589999987
Q ss_pred ceEEEEeCCCCceEEccCCCccccc-cccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceE
Q 011957 248 QSAEVFDPRTGLWSEILSMPFSKAQ-VLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV 325 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~ 325 (474)
+.+++|+..+ ..+..|.+... .+|. ....+-++.... ++++|+|-|. .-++||..+++=.
T Consensus 88 ~~~w~~~~~~----~~~gyPk~I~~~GlP~-----~~~~IDAA~~~~~~gk~yfFkG~---------~ywr~d~~~~~~d 149 (207)
T 1pex_A 88 RKFWALNGYD----ILEGYPKKISELGLPK-----EVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMD 149 (207)
T ss_dssp TEEEEESTTC----CCTTCSEESTTTTCCT-----TCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEEC
T ss_pred CEEEEEeCCe----eccCCceeccccCCCC-----CCccccEEEEeCCCCEEEEEeCC---------EEEEEeCcCcccc
Confidence 3567776432 12212221111 0110 000000222222 5899998762 2378988765311
Q ss_pred E-cCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceE
Q 011957 326 E-MPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWK 377 (474)
Q Consensus 326 ~-~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 377 (474)
. -+..+...|+......-++...++++|++-| +..++||..+++=.
T Consensus 150 ~gyPr~i~~~~~Gip~~iDaAf~~~g~~YfFkg------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 150 KDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNG------PIQFEYSIWSNRIV 196 (207)
T ss_dssp SSCCCBHHHHSTTSCSCCSEEEEETTEEEEEET------TEEEEEETTTTEEE
T ss_pred CCCCccHHHcCCCCCCCccEEEEcCCcEEEEEC------CEEEEEeCCccEEe
Confidence 0 0000111121111122235667999999976 57899999876533
No 47
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.08 E-value=0.82 Score=41.64 Aligned_cols=189 Identities=10% Similarity=0.120 Sum_probs=96.1
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
.++.||+.+... ...+.+||+....-..+..... ..-..+++. +++|||.... ...+.+||+...
T Consensus 87 ~~g~l~v~~~~~----~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~g~ 152 (286)
T 1q7f_A 87 NSGDIIVTERSP----THQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNGN 152 (286)
T ss_dssp TTTEEEEEECGG----GCEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETT---------TTEEEEECTTSC
T ss_pred CCCeEEEEcCCC----CCEEEEECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEECC---------CCEEEEEcCCCC
Confidence 378899986321 2568899965544333322111 111223332 5789987642 257889998765
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
....+.... .... + .+++. -++++|+....+ -...+||+....-..+........|
T Consensus 153 ~~~~~~~~~-~~~~--p------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~g~~~~~~~~~g~~~~p- 209 (286)
T 1q7f_A 153 VLHKFGCSK-HLEF--P------------NGVVVNDKQEIFISDNRA-------HCVKVFNYEGQYLRQIGGEGITNYP- 209 (286)
T ss_dssp EEEEEECTT-TCSS--E------------EEEEECSSSEEEEEEGGG-------TEEEEEETTCCEEEEESCTTTSCSE-
T ss_pred EEEEeCCCC-ccCC--c------------EEEEECCCCCEEEEECCC-------CEEEEEcCCCCEEEEEccCCccCCC-
Confidence 444442110 0001 0 23333 368899865322 2347899866554444321100011
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEE-eeCCEEEEEecCCCCcee
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLA-GLLGKLHVITNDANHNIA 416 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~v~GG~~~~~~~ 416 (474)
...++.-+|+||+.+..+ ...|.+||++...-..+....+ . ....+++ .-+++|||.. .++.+.
T Consensus 210 ----~~i~~d~~G~l~v~~~~~---~~~i~~~~~~g~~~~~~~~~~~-----~-~~~~~i~~~~~g~l~vs~--~~~~v~ 274 (286)
T 1q7f_A 210 ----IGVGINSNGEILIADNHN---NFNLTIFTQDGQLISALESKVK-----H-AQCFDVALMDDGSVVLAS--KDYRLY 274 (286)
T ss_dssp ----EEEEECTTCCEEEEECSS---SCEEEEECTTSCEEEEEEESSC-----C-SCEEEEEEETTTEEEEEE--TTTEEE
T ss_pred ----cEEEECCCCCEEEEeCCC---CEEEEEECCCCCEEEEEcccCC-----C-CcceeEEECCCCcEEEEC--CCCeEE
Confidence 111233468899987522 1279999987654444432111 1 1123343 3478888884 245555
Q ss_pred EEEE
Q 011957 417 VLQA 420 (474)
Q Consensus 417 ~~~~ 420 (474)
+..+
T Consensus 275 v~~~ 278 (286)
T 1q7f_A 275 IYRY 278 (286)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5443
No 48
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.97 E-value=0.57 Score=44.40 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=51.6
Q ss_pred CC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCc-ceEEEECCE-EEEEcCCCCCCCceEEEEE
Q 011957 294 RG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGT-KLSITVEGE-LYALDPSGALDSAKIKVYD 370 (474)
Q Consensus 294 ~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~-~~~~~~~~~-lyv~GG~~~~~~~~v~~yd 370 (474)
++ .+|+.+..+ -...+||..+++.+.+.. ... .+....+. ..+..-+++ ||+.... ..+.+.+|+
T Consensus 221 dg~~l~v~~~~~-------~~v~v~~~~~g~~~~~~~-~~~-~~~~~~~~~~i~~spdg~~l~v~~~~---~~~~i~v~~ 288 (361)
T 3scy_A 221 DGKFAYLINEIG-------GTVIAFRYADGMLDEIQT-VAA-DTVNAQGSGDIHLSPDGKYLYASNRL---KADGVAIFK 288 (361)
T ss_dssp TSSEEEEEETTT-------CEEEEEEEETTEEEEEEE-EES-CSSCCCCEEEEEECTTSSEEEEEECS---SSCEEEEEE
T ss_pred CCCEEEEEcCCC-------CeEEEEEecCCceEEeEE-Eec-CCCCCCCcccEEECCCCCEEEEECCC---CCCEEEEEE
Confidence 45 477754322 123678877777655432 100 01111111 112333555 6665431 024566666
Q ss_pred C--CCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEee
Q 011957 371 Y--HDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 371 ~--~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
. .+++++.+. .++.+..+ + .....-+++.+++++..++.+.+..+|.
T Consensus 289 ~~~~~g~~~~~~-~~~~g~~~--~--~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 289 VDETNGTLTKVG-YQLTGIHP--R--NFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ECTTTCCEEEEE-EEECSSCC--C--EEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EcCCCCcEEEee-EecCCCCC--c--eEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 5 567777663 22221111 1 2223445665555555556666665653
No 49
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.96 E-value=0.35 Score=47.05 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=90.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+..+|+.++.+ ..+.+||+.+.+....-+. ...-..++.. +++.+++++...... ...-..+.+||+.+.+
T Consensus 223 ~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 223 RDLVYCSNWIS-----EDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQ-ESGGGRLGIYSMDKEK 294 (433)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTT-CSCCEEEEEEETTTTE
T ss_pred CCEEEEEecCC-----CcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCcc-ccCCCeEEEEECCCCc
Confidence 45677776532 4789999988765433222 1112222222 454444444331100 0013578999998875
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEE-eCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
-...-..+. .. ..++. -++ .+|+.++.++ ...+||+.+++-...-. .. .
T Consensus 295 ~~~~~~~~~--~~---------------~~~~~~~~g~~l~~~~~~~~-------~v~v~d~~~~~~~~~~~-~~----~ 345 (433)
T 3bws_A 295 LIDTIGPPG--NK---------------RHIVSGNTENKIYVSDMCCS-------KIEVYDLKEKKVQKSIP-VF----D 345 (433)
T ss_dssp EEEEEEEEE--CE---------------EEEEECSSTTEEEEEETTTT-------EEEEEETTTTEEEEEEE-CS----S
T ss_pred EEeeccCCC--Cc---------------ceEEECCCCCEEEEEecCCC-------EEEEEECCCCcEEEEec-CC----C
Confidence 433321111 10 22222 234 6888655442 33788988765433211 11 0
Q ss_pred cccCcceEEEECCE-EEEEcCCCC----------CCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEE-eeCCEEE
Q 011957 338 RQAGTKLSITVEGE-LYALDPSGA----------LDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLA-GLLGKLH 405 (474)
Q Consensus 338 ~~~~~~~~~~~~~~-lyv~GG~~~----------~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~~~~~l~ 405 (474)
.. ...+..-+++ ||+.+.... ...+.++.||+++.+-...- +.+ .....++ ..+++.+
T Consensus 346 ~~--~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~---~~~-----~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 346 KP--NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW---EAG-----NQPTGLDVSPDNRYL 415 (433)
T ss_dssp SE--EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE---ECS-----SSEEEEEECTTSCEE
T ss_pred CC--CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe---cCC-----CCCceEEEcCCCCEE
Confidence 11 1112233454 555443211 11348999999887654431 111 1112232 3456666
Q ss_pred EEecCCCCceeEEE
Q 011957 406 VITNDANHNIAVLQ 419 (474)
Q Consensus 406 v~GG~~~~~~~~~~ 419 (474)
++++..++.+.+..
T Consensus 416 ~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 416 VISDFLDHQIRVYR 429 (433)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 66664455555543
No 50
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.94 E-value=0.5 Score=42.52 Aligned_cols=174 Identities=11% Similarity=0.136 Sum_probs=87.8
Q ss_pred eCCEEEE-EcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYV-LGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv-~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
-++.||+ .... ...+.+||+.+........... ..-.+++.. +++|||... . ..+.+||+.+
T Consensus 33 ~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~---------~~i~~~d~~~ 96 (270)
T 1rwi_B 33 SAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N---------NRVVTLAAGS 96 (270)
T ss_dssp TTCCEEEEECSS-----SCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T---------TEEEEECTTC
T ss_pred CCCCEEEEccCC-----CCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C---------CEEEEEeCCC
Confidence 3678998 5332 3578899988776554432111 112233333 567888764 2 4688999988
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
.....+..... ... .+++.. +|++|+..... -...+||..+........ ... .
T Consensus 97 ~~~~~~~~~~~--~~p--------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~~~~~~~~~~-~~~--~ 150 (270)
T 1rwi_B 97 NNQTVLPFDGL--NYP--------------EGLAVDTQGAVYVADRGN-------NRVVKLAAGSKTQTVLPF-TGL--N 150 (270)
T ss_dssp SCCEECCCCSC--SSE--------------EEEEECTTCCEEEEEGGG-------TEEEEECTTCCSCEECCC-CSC--C
T ss_pred ceEeeeecCCc--CCC--------------cceEECCCCCEEEEECCC-------CEEEEEECCCceeEeecc-ccC--C
Confidence 76554432110 110 333433 67899864322 234678877665544322 110 1
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee-CCEEEEEec
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL-LGKLHVITN 409 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG 409 (474)
.+ ...+..-+++||+.... .+.|.+||++...-.... .... ....+++.- ++.||+...
T Consensus 151 ~p---~~i~~~~~g~l~v~~~~----~~~i~~~~~~~~~~~~~~----~~~~---~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 151 DP---DGVAVDNSGNVYVTDTD----NNRVVKLEAESNNQVVLP----FTDI---TAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp SC---CCEEECTTCCEEEEEGG----GTEEEEECTTTCCEEECC----CSSC---CSEEEEEECTTCCEEEEET
T ss_pred Cc---eeEEEeCCCCEEEEECC----CCEEEEEecCCCceEeec----ccCC---CCceEEEECCCCCEEEEEC
Confidence 11 11123336889988542 357999999877543321 1111 122344443 457888664
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.92 E-value=0.31 Score=48.12 Aligned_cols=183 Identities=11% Similarity=0.073 Sum_probs=92.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++.+++.|+.+ ..+.+||..+.+-...-...... -.+++.. +++.++.|+.+ ..+.+||..+.+
T Consensus 279 ~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~ 343 (464)
T 3v7d_B 279 HGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHERKRCISASMD---------TTIRIWDLENGE 343 (464)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSC-EEEEEEETTTTEEEEEETT---------SCEEEEETTTTE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCCCC-EEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCc
Confidence 44455556543 46889998876533221111111 1122222 45666666643 568999998765
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQ 339 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~ 339 (474)
-.. .+...... ......++...+.|+.++ ...+||+.+..-..... . ..
T Consensus 344 ~~~--~~~~h~~~---------------v~~~~~~~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~-~------~~ 392 (464)
T 3v7d_B 344 LMY--TLQGHTAL---------------VGLLRLSDKFLVSAAADG-------SIRGWDANDYSRKFSYH-H------TN 392 (464)
T ss_dssp EEE--EECCCSSC---------------EEEEEECSSEEEEEETTS-------EEEEEETTTCCEEEEEE-C------TT
T ss_pred EEE--EEeCCCCc---------------EEEEEEcCCEEEEEeCCC-------cEEEEECCCCceeeeec-C------CC
Confidence 322 22111111 223344566666666553 23688887765322111 0 01
Q ss_pred cCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEE
Q 011957 340 AGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQ 419 (474)
Q Consensus 340 ~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~ 419 (474)
.....+...++.+++.|+ .+.+..||.++++-.... ..+ . ......+.++++.+++++..++...+..
T Consensus 393 ~~~~~~~~~~~~~l~~~~-----dg~i~iwd~~~g~~~~~~-~~~-----~-~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 393 LSAITTFYVSDNILVSGS-----ENQFNIYNLRSGKLVHAN-ILK-----D-ADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCCEEEEEECSSEEEEEE-----TTEEEEEETTTCCEEESC-TTT-----T-CSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CccEEEEEeCCCEEEEec-----CCeEEEEECCCCcEEehh-hcc-----C-CCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 111224566778777776 258999999988654321 111 1 1223333444555555554555555555
Q ss_pred Ee
Q 011957 420 AD 421 (474)
Q Consensus 420 ~d 421 (474)
+|
T Consensus 461 ld 462 (464)
T 3v7d_B 461 LD 462 (464)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.89 E-value=0.64 Score=43.01 Aligned_cols=146 Identities=9% Similarity=-0.014 Sum_probs=76.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+....-.... .......+ +++.++.|+.+ ..+.+||..+.
T Consensus 152 ~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~ 215 (337)
T 1gxr_A 152 DSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLD---------NTVRSWDLREG 215 (337)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT---------SEEEEEETTTT
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecC---------CcEEEEECCCC
Confidence 45555666543 468889988875433211111 11222222 56666666642 57899999876
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+-...-..+.+. .+++. -+++++++|+.++ ....||..+..=..+.. .. .
T Consensus 216 ~~~~~~~~~~~v-----------------~~~~~s~~~~~l~~~~~~~-------~i~~~~~~~~~~~~~~~-~~----~ 266 (337)
T 1gxr_A 216 RQLQQHDFTSQI-----------------FSLGYCPTGEWLAVGMESS-------NVEVLHVNKPDKYQLHL-HE----S 266 (337)
T ss_dssp EEEEEEECSSCE-----------------EEEEECTTSSEEEEEETTS-------CEEEEETTSSCEEEECC-CS----S
T ss_pred ceEeeecCCCce-----------------EEEEECCCCCEEEEEcCCC-------cEEEEECCCCCeEEEcC-Cc----c
Confidence 543322211111 22222 3566666665442 23788887765443332 11 1
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceE
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWK 377 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 377 (474)
.. ......-++++++.++. .+.+..||.++.+-.
T Consensus 267 ~v--~~~~~~~~~~~l~~~~~----dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 267 CV--LSLKFAYCGKWFVSTGK----DNLLNAWRTPYGASI 300 (337)
T ss_dssp CE--EEEEECTTSSEEEEEET----TSEEEEEETTTCCEE
T ss_pred ce--eEEEECCCCCEEEEecC----CCcEEEEECCCCeEE
Confidence 11 11122335677777663 357999999887644
No 53
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.87 E-value=1 Score=40.96 Aligned_cols=174 Identities=11% Similarity=0.036 Sum_probs=91.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++.||+.... ...+.+||+ +.+............-..++.. ++++|+.... ...+.+||+ +++
T Consensus 109 ~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~-~g~ 172 (299)
T 2z2n_A 109 NGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ---------NNAIGRITE-SGD 172 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECT-TCC
T ss_pred CCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC---------CCEEEEEcC-CCc
Confidence 6788887532 256889998 6665543211111222233333 5788886531 257889999 777
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVR 338 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~ 338 (474)
...+. ++...... .+++. -+++||+..... -+..+||+ +++...+..+... ..+
T Consensus 173 ~~~~~-~~~~~~~~--------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~--~~~ 227 (299)
T 2z2n_A 173 ITEFK-IPTPASGP--------------VGITKGNDDALWFVEIIG-------NKIGRITT-SGEITEFKIPTPN--ARP 227 (299)
T ss_dssp EEEEE-CSSTTCCE--------------EEEEECTTSSEEEEETTT-------TEEEEECT-TCCEEEEECSSTT--CCE
T ss_pred EEEee-CCCCCCcc--------------eeEEECCCCCEEEEccCC-------ceEEEECC-CCcEEEEECCCCC--CCc
Confidence 76542 11111110 33333 357898854321 23478999 7777765321110 111
Q ss_pred ccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 339 QAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 339 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
...+..-+|+||+... ..+.|.+||+ +.+...+. ++.+ .....+++.-+++||+...
T Consensus 228 ---~~i~~~~~g~l~v~~~----~~~~i~~~d~-~g~~~~~~--~~~~----~~~~~~i~~~~g~l~v~~~ 284 (299)
T 2z2n_A 228 ---HAITAGAGIDLWFTEW----GANKIGRLTS-NNIIEEYP--IQIK----SAEPHGICFDGETIWFAME 284 (299)
T ss_dssp ---EEEEECSTTCEEEEET----TTTEEEEEET-TTEEEEEE--CSSS----SCCEEEEEECSSCEEEEET
T ss_pred ---eeEEECCCCCEEEecc----CCceEEEECC-CCceEEEe--CCCC----CCccceEEecCCCEEEEec
Confidence 1112233678988753 1357999999 45554442 1211 1122344446677887653
No 54
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.74 E-value=0.64 Score=47.41 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred EEECCE-EEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEee-CCEEEEEecCCCCceeEEEEe
Q 011957 346 ITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGL-LGKLHVITNDANHNIAVLQAD 421 (474)
Q Consensus 346 ~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~d 421 (474)
..-+++ +|+.+. ..+.|.++|.++++-... ++.+..+++........- ++.+|+.+...++.+.+...|
T Consensus 331 ~spdg~~l~va~~----~~~~v~v~D~~tg~l~~~---i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 331 WDSSHRYFMTAAN----NSNKVAVIDSKDRRLSAL---VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp ECTTSCEEEEEEG----GGTEEEEEETTTTEEEEE---EECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ECCCCCEEEEEec----CCCeEEEEECCCCeEEEe---eccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC
Confidence 344566 444432 245789999998864332 223333333233333222 477888776555555555544
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.73 E-value=1.2 Score=43.71 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=80.4
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
..++..++.|+.+ ..+.+||+.+.+-.. .+........+...++..++.|+.+ ..+.+||..+.
T Consensus 246 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d---------~~i~i~d~~~~ 309 (445)
T 2ovr_B 246 QYDGRRVVSGAYD-----FMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLD---------TSIRVWDVETG 309 (445)
T ss_dssp EECSSCEEEEETT-----SCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETT---------SCEEEEETTTC
T ss_pred EECCCEEEEEcCC-----CEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCC---------CeEEEEECCCC
Confidence 3466666777653 467888887764322 1111111223333477777777643 56889999876
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~~~p~ 337 (474)
+-... +...... ......++.+++.|+.++ ...+||..+++-.. +.. . .
T Consensus 310 ~~~~~--~~~~~~~---------------v~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~-~-----~ 359 (445)
T 2ovr_B 310 NCIHT--LTGHQSL---------------TSGMELKDNILVSGNADS-------TVKIWDIKTGQCLQTLQG-P-----N 359 (445)
T ss_dssp CEEEE--ECCCCSC---------------EEEEEEETTEEEEEETTS-------CEEEEETTTCCEEEEECS-T-----T
T ss_pred CEEEE--EcCCccc---------------EEEEEEeCCEEEEEeCCC-------eEEEEECCCCcEEEEEcc-C-----C
Confidence 53321 1111111 222334555666666443 23788887765332 221 0 0
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
........+..++.+++.|+. .+.|..||..+.+...
T Consensus 360 ~~~~~v~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 360 KHQSAVTCLQFNKNFVITSSD----DGTVKLWDLKTGEFIR 396 (445)
T ss_dssp SCSSCEEEEEECSSEEEEEET----TSEEEEEETTTCCEEE
T ss_pred CCCCCEEEEEECCCEEEEEeC----CCeEEEEECCCCceee
Confidence 111111245557777777763 3689999999886544
No 56
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.70 E-value=0.3 Score=44.79 Aligned_cols=153 Identities=16% Similarity=0.074 Sum_probs=87.5
Q ss_pred eeEEEEC-CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEe
Q 011957 222 SKIGILN-NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVP 300 (474)
Q Consensus 222 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 300 (474)
++++..+ +.||+..|.. ..+.+.++|+++++=...-+++..... .+++..+++||+.
T Consensus 24 ~Gl~~~~dg~Lyvstg~~-------~~s~v~~iD~~tg~v~~~i~l~~~~fg---------------eGi~~~g~~lyv~ 81 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLY-------GRSSVRQVALQTGKVENIHKMDDSYFG---------------EGLTLLNEKLYQV 81 (266)
T ss_dssp EEEEECSTTEEEEEECST-------TTCEEEEEETTTCCEEEEEECCTTCCE---------------EEEEEETTEEEEE
T ss_pred ccEEEeCCCeEEEECCCC-------CCCEEEEEECCCCCEEEEEecCCCcce---------------EEEEEeCCEEEEE
Confidence 4565555 8999987732 136899999999986544333322222 5667778999997
Q ss_pred ccCCCCcceeccceEEEcCCCCce-EEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 301 QSLYFWPFFVDVGGEVYDPDVNSW-VEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t~~W-~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.-.. -.+.+||+++.+= .+++.++ ..+.+ ++.-++++|+..| .+.+.++|+++.+=..
T Consensus 82 t~~~-------~~v~viD~~t~~v~~~i~~g~-------~~g~g-lt~Dg~~l~vs~g-----s~~l~viD~~t~~v~~- 140 (266)
T 2iwa_A 82 VWLK-------NIGFIYDRRTLSNIKNFTHQM-------KDGWG-LATDGKILYGSDG-----TSILYEIDPHTFKLIK- 140 (266)
T ss_dssp ETTC-------SEEEEEETTTTEEEEEEECCS-------SSCCE-EEECSSSEEEECS-----SSEEEEECTTTCCEEE-
T ss_pred EecC-------CEEEEEECCCCcEEEEEECCC-------CCeEE-EEECCCEEEEECC-----CCeEEEEECCCCcEEE-
Confidence 5433 2348999987642 2233210 12222 4455677998765 4689999999875332
Q ss_pred ccCCCCCCCCCC-CCCeEEEeeCCEEEEEecCCCCceeEEEEee
Q 011957 380 VGDVPLPNFTDS-ESPYLLAGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 380 ~~~~p~~~~~~~-r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
.++.+..+.+ +..-.+...+++||+--.. .+ .+..+|.
T Consensus 141 --~I~Vg~~~~p~~~~nele~~dg~lyvn~~~-~~--~V~vID~ 179 (266)
T 2iwa_A 141 --KHNVKYNGHRVIRLNELEYINGEVWANIWQ-TD--CIARISA 179 (266)
T ss_dssp --EEECEETTEECCCEEEEEEETTEEEEEETT-SS--EEEEEET
T ss_pred --EEEECCCCcccccceeEEEECCEEEEecCC-CC--eEEEEEC
Confidence 1222211111 1112344448888875542 22 3444554
No 57
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.69 E-value=1.2 Score=40.73 Aligned_cols=179 Identities=10% Similarity=0.005 Sum_probs=88.7
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEE
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
.+.-+|.|++.+ .+.+..||+ +.+ |+.-.+ .....+++... +++++|..... ...+..+
T Consensus 43 ~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~v 104 (276)
T 3no2_A 43 AATKAGEILFSY-------SKGAKMITR-DGRELWNIAAP--AGCEMQTARILPDGNALVAWCGH--------PSTILEV 104 (276)
T ss_dssp EECTTSCEEEEC-------BSEEEEECT-TSCEEEEEECC--TTCEEEEEEECTTSCEEEEEEST--------TEEEEEE
T ss_pred EECCCCCEEEeC-------CCCEEEECC-CCCEEEEEcCC--CCccccccEECCCCCEEEEecCC--------CCEEEEE
Confidence 334477888843 246889999 554 665432 11122233333 67777664420 2467788
Q ss_pred eCCCCc-eEEcc--CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC-ceEEcCC
Q 011957 254 DPRTGL-WSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN-SWVEMPV 329 (474)
Q Consensus 254 d~~t~~-W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-~W~~~~~ 329 (474)
|+.-.. |+.-. ..+.+.... .......+|.+++....+ -...+||++-+ .|+.-..
T Consensus 105 d~~Gk~l~~~~~~~~~~~~~~~~-------------~~v~~~~~G~~lv~~~~~-------~~v~~~d~~G~~~w~~~~~ 164 (276)
T 3no2_A 105 NMKGEVLSKTEFETGIERPHAQF-------------RQINKNKKGNYLVPLFAT-------SEVREIAPNGQLLNSVKLS 164 (276)
T ss_dssp CTTSCEEEEEEECCSCSSGGGSC-------------SCCEECTTSCEEEEETTT-------TEEEEECTTSCEEEEEECS
T ss_pred eCCCCEEEEEeccCCCCcccccc-------------cCceECCCCCEEEEecCC-------CEEEEECCCCCEEEEEECC
Confidence 885432 44221 111111100 012234466666643322 22478998722 2665332
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC--ceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEE
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD--TWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVI 407 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~--~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 407 (474)
. .| +++....+|.+++.+.. ...|..+|+++. .|+.-...++...+. .........+|.+||.
T Consensus 165 -~---~~-----~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~l~--~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 165 -G---TP-----FSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQLF--FVAQLFPLQNGGLYIC 229 (276)
T ss_dssp -S---CC-----CEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCCCS--EEEEEEECTTSCEEEE
T ss_pred -C---Cc-----cceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcccc--ccccceEcCCCCEEEE
Confidence 1 11 12245557888888653 247999999965 466532222211111 0112233458889988
Q ss_pred e
Q 011957 408 T 408 (474)
Q Consensus 408 G 408 (474)
.
T Consensus 230 ~ 230 (276)
T 3no2_A 230 N 230 (276)
T ss_dssp E
T ss_pred e
Confidence 7
No 58
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.69 E-value=0.43 Score=45.30 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=34.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCc-ceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGR-AYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+..||+.+........-.+|.+|..+.+.+.+...+..- .-..++.-+..||+.... ...+.+||..++
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~---------~~~v~~~~~~~~ 130 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYS---------GGSITVFPIGQD 130 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETT---------TTEEEEEEBCTT
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECC---------CCEEEEEEeCCC
Confidence 345777654321111233456666667777665444222 222233333456665431 256888888643
No 59
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.63 E-value=1.3 Score=40.32 Aligned_cols=180 Identities=10% Similarity=0.157 Sum_probs=92.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC---CC-cceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEe
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS---VG-RAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
++.||+.+.. ...+.+||+....-..++... .. ..-..+++. +++|||.+... ...+.+||
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~--------~~~i~~~d 106 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP--------THQIQIYN 106 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG--------GCEEEEEC
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC--------CCEEEEEC
Confidence 6789987543 356889998855444433211 11 122334442 68999987421 25688999
Q ss_pred CCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 255 PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 255 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
+....-..+..... .. + .++++ -+|++|+..... -...+||+.......+.....
T Consensus 107 ~~g~~~~~~~~~~~--~~--~------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~g~~~~~~~~~~~- 162 (286)
T 1q7f_A 107 QYGQFVRKFGATIL--QH--P------------RGVTVDNKGRIIVVECKV-------MRVIIFDQNGNVLHKFGCSKH- 162 (286)
T ss_dssp TTSCEEEEECTTTC--SC--E------------EEEEECTTSCEEEEETTT-------TEEEEECTTSCEEEEEECTTT-
T ss_pred CCCcEEEEecCccC--CC--c------------eEEEEeCCCCEEEEECCC-------CEEEEEcCCCCEEEEeCCCCc-
Confidence 65444333322110 01 0 33333 367899864322 234788876655444432110
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEecCC
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVITNDA 411 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG~~ 411 (474)
...+ ...++.-+++||+.+.. .+.|.+||++...-..+... +.+ ....+++. -+|+|||.....
T Consensus 163 -~~~p---~~i~~~~~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~---g~~---~~p~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 163 -LEFP---NGVVVNDKQEIFISDNR----AHCVKVFNYEGQYLRQIGGE---GIT---NYPIGVGINSNGEILIADNHN 227 (286)
T ss_dssp -CSSE---EEEEECSSSEEEEEEGG----GTEEEEEETTCCEEEEESCT---TTS---CSEEEEEECTTCCEEEEECSS
T ss_pred -cCCc---EEEEECCCCCEEEEECC----CCEEEEEcCCCCEEEEEccC---Ccc---CCCcEEEECCCCCEEEEeCCC
Confidence 0111 11133345889988542 35899999976654444311 101 11233443 357888876543
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.35 Score=45.73 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=43.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.|+.+ ..+.+||....+++.+..+........+..+ + +.+++.|+.+ ..+.+||..
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~v~iwd~~ 87 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD---------GKVLIWKEE 87 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---------SCEEEEEEE
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC---------CEEEEEEcC
Confidence 45666666543 3577888776666655433322222223333 2 5666677643 568899999
Q ss_pred CCceEEccCCC
Q 011957 257 TGLWSEILSMP 267 (474)
Q Consensus 257 t~~W~~~~~~p 267 (474)
+++|..+..+.
T Consensus 88 ~~~~~~~~~~~ 98 (379)
T 3jrp_A 88 NGRWSQIAVHA 98 (379)
T ss_dssp TTEEEEEEEEC
T ss_pred CCceeEeeeec
Confidence 99887665443
No 61
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.61 E-value=1.3 Score=41.32 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=77.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+|+.+... ...++++|+.+.+-...-+. ....-..++.. ++.+|+... ...+.+||+.+.
T Consensus 152 g~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~----------~~~i~~~d~~~~ 216 (353)
T 3vgz_A 152 TNTVYISGIGK----ESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSEGKRLYTTNA----------DGELITIDTADN 216 (353)
T ss_dssp TTEEEEEEESS----SCEEEEEETTTTEEEEEECC-CCTTCCCCEEETTTTEEEEECT----------TSEEEEEETTTT
T ss_pred CCEEEEEecCC----CceEEEEcCCCCceEEEecC-CCCccceEEECCCCCEEEEEcC----------CCeEEEEECCCC
Confidence 56688876221 35699999988764332111 11112223332 456777643 147889999887
Q ss_pred ceEEccCCCc--cccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCC
Q 011957 259 LWSEILSMPF--SKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEG 334 (474)
Q Consensus 259 ~W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~ 334 (474)
+-...-..+. +... ..+++.. ++.+|+..... -...+||+.+++-...-. ...
T Consensus 217 ~~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~~~~~~~~~~~-~~~- 273 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHF--------------FINISLDTARQRAFITDSKA-------AEVLVVDTRNGNILAKVA-APE- 273 (353)
T ss_dssp EEEEEEECCCSSSCCC--------------EEEEEEETTTTEEEEEESSS-------SEEEEEETTTCCEEEEEE-CSS-
T ss_pred eEEEEEEcCCCCCCcc--------------cceEEECCCCCEEEEEeCCC-------CEEEEEECCCCcEEEEEE-cCC-
Confidence 6433222211 1111 0223332 44577754322 223789998877544322 111
Q ss_pred CCccccCcceEEEECC-EEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 335 WPVRQAGTKLSITVEG-ELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 335 ~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
+ . ..+..-++ .+|+.+.. .+.|.+||+.+.+-..
T Consensus 274 -~---~--~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 274 -S---L--AVLFNPARNEAYVTHRQ----AGKVSVIDAKSYKVVK 308 (353)
T ss_dssp -C---C--CEEEETTTTEEEEEETT----TTEEEEEETTTTEEEE
T ss_pred -C---c--eEEECCCCCEEEEEECC----CCeEEEEECCCCeEEE
Confidence 1 1 11233344 57887642 3589999998876544
No 62
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.52 E-value=1.4 Score=40.04 Aligned_cols=175 Identities=9% Similarity=0.026 Sum_probs=91.3
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
-++.||+.... ...+.+||+. .+............-+.++.. ++++|+.... ...+.+||+. +
T Consensus 71 ~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---------~~~i~~~~~~-g 134 (300)
T 2qc5_A 71 SLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN---------GDRIGKLTAD-G 134 (300)
T ss_dssp TTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT---------TTEEEEECTT-S
T ss_pred CCCCEEEEecC-----CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC---------CCeEEEECCC-C
Confidence 35778887532 2568999988 666544321111222333333 5789887542 2468899987 6
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+..... ++...... .+++. -++++|+..... -...+||+ +++...+..+... ..
T Consensus 135 ~~~~~~-~~~~~~~~--------------~~i~~d~~g~l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~--~~ 189 (300)
T 2qc5_A 135 TIYEYD-LPNKGSYP--------------AFITLGSDNALWFTENQN-------NSIGRITN-TGKLEEYPLPTNA--AA 189 (300)
T ss_dssp CEEEEE-CSSTTCCE--------------EEEEECTTSSEEEEETTT-------TEEEEECT-TCCEEEEECSSTT--CC
T ss_pred CEEEcc-CCCCCCCc--------------eeEEECCCCCEEEEecCC-------CeEEEECC-CCcEEEeeCCCCC--CC
Confidence 665442 22111110 33333 367888854221 23478998 6777665321110 11
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEec
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVITN 409 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~GG 409 (474)
+ ...+..-++.||+.... .+.+.+||+ +++...+. ++. ......+++. -+++|||...
T Consensus 190 ~---~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~--~~~----~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 190 P---VGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD--IPT----PNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp E---EEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE--CSS----TTCCEEEEEECSTTCEEEEET
T ss_pred c---ceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE--CCC----CCCCceEEEECCCCCEEEecc
Confidence 1 11122236789987531 347999999 56666653 111 1112234443 2567887653
No 63
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=95.51 E-value=0.15 Score=45.49 Aligned_cols=157 Identities=14% Similarity=0.225 Sum_probs=78.8
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeC---------------CCCceeecCCCCCCcceeeEEE--ECCEEEEEeceecCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDP---------------VLNAWSEVSSMSVGRAYSKIGI--LNNKLYAVGGVTRGPG 242 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~---------------~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~ 242 (474)
.+|++|+|-| ..+|+++. .+..|..||+-+......-++. .++++|+|-|
T Consensus 12 ~~ge~~fFk~-------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg------ 78 (225)
T 3oyo_A 12 SEYEVYFFAK-------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG------ 78 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET------
T ss_pred CCCEEEEEEC-------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC------
Confidence 4799999975 45777761 1222444443222222333333 4799999987
Q ss_pred CCccCceEEEEeCCCC--ceEEccCCCccccccccchhhcc--ccccceeeEE-EeCCEEEEeccCCCCcceeccceEEE
Q 011957 243 GLTPLQSAEVFDPRTG--LWSEILSMPFSKAQVLPTAFLAD--LLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVY 317 (474)
Q Consensus 243 ~~~~~~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~--~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~y 317 (474)
+..++||..++ .-..++. |.+.....+. ++. ....+-++.. ..++++|+|-|. .-++|
T Consensus 79 -----~~~W~~d~~~~t~~~~~~~g-P~~I~~~wp~--LP~~~~~~~IDAA~~~~~~gk~yfFkG~---------~yw~~ 141 (225)
T 3oyo_A 79 -----NHSAYIDYAPGTTNDKILVG-PTTIAEMFPV--LNNTVFEDSIDSAFRSTKGKEVYLFKGN---------KYVRI 141 (225)
T ss_dssp -----TEEEEEECCTTSSCCEEEEE-EEEHHHHCGG--GTTSTTTSCCCEEEECSSTTEEEEEETT---------EEEEE
T ss_pred -----CEEEEEecccccCCCceecC-chhhhhcCCC--CCCcccccccceEEEECCCCcEEEEeCC---------eEEEE
Confidence 45788876332 1222221 2111110000 000 0000002222 137899998763 23789
Q ss_pred cCCCCceEEcCCCCCCCCCcc-----ccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECC
Q 011957 318 DPDVNSWVEMPVGMGEGWPVR-----QAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 318 d~~t~~W~~~~~~~~~~~p~~-----~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~ 372 (474)
|..+++-..-+..+..++|.. ....-++.. .++++|++-| +..|+||..
T Consensus 142 d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG------~~ywr~d~~ 197 (225)
T 3oyo_A 142 AYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG------QNYVRIDFT 197 (225)
T ss_dssp ETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET------TEEEEEECC
T ss_pred ECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC------CEEEEEeCC
Confidence 877765543221121233332 112222344 3799999976 578999998
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.50 E-value=0.0047 Score=63.99 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=29.2
Q ss_pred CCCCCCcHHHHHHhhhccC-ccchhhHHHhhHHHHHh
Q 011957 41 RLIPSLPDEISLQILARIP-RIYYLNVKLVSRAWKAA 76 (474)
Q Consensus 41 ~~~~~LPddl~~~il~rlp-~~~~~~~~~Vck~W~~l 76 (474)
..|..||||++.+||.+|| .++..+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4678899999999999999 99999999999999987
No 65
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.58 Score=44.20 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=38.9
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+.+++.|+.+ ..+.+||..+++|..+..+.........+.+ + +.+++.|+.+ ..+.+||..+
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~ 134 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKE 134 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCT
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCC
Confidence 5566666653 4688899999887766544332222333333 2 5666777643 5788999887
Q ss_pred C
Q 011957 258 G 258 (474)
Q Consensus 258 ~ 258 (474)
.
T Consensus 135 ~ 135 (379)
T 3jrp_A 135 N 135 (379)
T ss_dssp T
T ss_pred C
Confidence 6
No 66
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.45 E-value=0.41 Score=51.34 Aligned_cols=152 Identities=12% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC----CCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEe
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM----SVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~----p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
+|.||+... +-+++||+.+++|+..... ..+......... ++.|++... .-+.+||
T Consensus 462 ~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-----------~Gl~~~~ 523 (795)
T 4a2l_A 462 EGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-----------EGLSVFK 523 (795)
T ss_dssp SSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----------SCEEEEE
T ss_pred CCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-----------CceEEEe
Confidence 577887532 3489999999999887533 111111112222 467777432 2478899
Q ss_pred CCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 255 PRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 255 ~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
+.++++ ......... . .+. ..+.+++. .+|.|++-.. -|..+||+.+++++.... ..
T Consensus 524 ~~~~~~-~~~~~~~~~-~-l~~--------~~i~~i~~d~~g~lWigT~---------~Gl~~~d~~~~~~~~~~~--~~ 581 (795)
T 4a2l_A 524 QEGLDI-QKASILPVS-N-VTK--------LFTNCIYEASNGIIWVGTR---------EGFYCFNEKDKQIKRYNT--TN 581 (795)
T ss_dssp EETTEE-EECCCSCSC-G-GGG--------SCEEEEEECTTSCEEEEES---------SCEEEEETTTTEEEEECG--GG
T ss_pred CCCCeE-EEecCCCCC-C-CCC--------CeeEEEEECCCCCEEEEeC---------CCceeECCCCCcEEEeCC--CC
Confidence 988887 433110000 0 000 00123332 4688888432 245899999999987653 22
Q ss_pred CCCccccCcceEEE-ECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 334 GWPVRQAGTKLSIT-VEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 334 ~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
++|..... + ++. -+|.|++.+. ..+.+||+++++++...
T Consensus 582 gl~~~~i~-~-i~~d~~g~lWi~t~------~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 582 GLPNNVVY-G-ILEDSFGRLWLSTN------RGISCFNPETEKFRNFT 621 (795)
T ss_dssp TCSCSCEE-E-EEECTTSCEEEEET------TEEEEEETTTTEEEEEC
T ss_pred CCchhheE-E-EEECCCCCEEEEcC------CceEEEcCCCCcEEEcC
Confidence 23322221 1 222 2578888753 47899999999988764
No 67
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.41 E-value=1.5 Score=39.78 Aligned_cols=150 Identities=9% Similarity=0.074 Sum_probs=82.1
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC-cceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG-RAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
-++.||+.... ...+.+||+. .+...... +.. ..-++++.. +++||+.... ...+.+||+.
T Consensus 29 ~~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~---------~~~v~~~d~~- 91 (300)
T 2qc5_A 29 EDGKVWFTQHK-----ANKISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGDIWFTENG---------ANKIGKLSKK- 91 (300)
T ss_dssp TTSCEEEEETT-----TTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETT---------TTEEEEECTT-
T ss_pred CCCCEEEEcCC-----CCeEEEECCC-CceEEEEC-CCCCCcceeEEECCCCCEEEEecC---------CCeEEEECCC-
Confidence 36789987532 3578899988 76665432 211 122233332 4788887542 2568899998
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
+++.... ++...... .+++. -++++|+..... -+..+||+. ++......+... .
T Consensus 92 g~~~~~~-~~~~~~~~--------------~~i~~~~~g~l~v~~~~~-------~~i~~~~~~-g~~~~~~~~~~~--~ 146 (300)
T 2qc5_A 92 GGFTEYP-LPQPDSGP--------------YGITEGLNGDIWFTQLNG-------DRIGKLTAD-GTIYEYDLPNKG--S 146 (300)
T ss_dssp SCEEEEE-CSSTTCCE--------------EEEEECSTTCEEEEETTT-------TEEEEECTT-SCEEEEECSSTT--C
T ss_pred CCeEEec-CCCCCCCC--------------ccceECCCCCEEEEccCC-------CeEEEECCC-CCEEEccCCCCC--C
Confidence 7766443 12111110 34343 368899864322 234788887 666544321110 1
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.+ ...+..-+++||+... ....+++||+ +++...+
T Consensus 147 ~~---~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 181 (300)
T 2qc5_A 147 YP---AFITLGSDNALWFTEN----QNNSIGRITN-TGKLEEY 181 (300)
T ss_dssp CE---EEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred Cc---eeEEECCCCCEEEEec----CCCeEEEECC-CCcEEEe
Confidence 11 1112234578888753 1357999999 6666665
No 68
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.40 E-value=0.54 Score=43.74 Aligned_cols=137 Identities=13% Similarity=0.153 Sum_probs=67.9
Q ss_pred eEEEEeCCCCceeecCCCCCCcceeeEEEE-CC-EEEEEeceecCCCCCccCce-EEEEeCCCCce-EEcc--CCCcccc
Q 011957 198 NVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NN-KLYAVGGVTRGPGGLTPLQS-AEVFDPRTGLW-SEIL--SMPFSKA 271 (474)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~-~~~yd~~t~~W-~~~~--~~p~~r~ 271 (474)
.+.+||+.+++-...- +.....+.++.. ++ .||+.+... .. +.+||...+.- .... .++.. .
T Consensus 109 ~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~---------~~~i~~~~~~~~g~~~~~~~~~~~~~-~ 176 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSS---------ANTVRRFKIDADGVLFDTGQEFISGG-T 176 (331)
T ss_dssp EEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETT---------TTEEEEEEECTTCCEEEEEEEEECSS-S
T ss_pred cEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCC---------CceEEEEEECCCCcEeecCCccccCC-C
Confidence 7999999888754432 222222333333 34 588776531 34 67777654321 1110 00000 0
Q ss_pred ccccchhhccccccceeeEEE-eCCE-EEEeccCCCCcceeccceEEEcCCCCce----EEcCCCCCCCCCccccCcceE
Q 011957 272 QVLPTAFLADLLKPIATGMSS-YRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSW----VEMPVGMGEGWPVRQAGTKLS 345 (474)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~-~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W----~~~~~~~~~~~p~~~~~~~~~ 345 (474)
. + ..++. -+++ +|+.+..+ -...+||+.+++. ..++.. . .| ...+
T Consensus 177 ~--~------------~~~~~spdg~~l~v~~~~~-------~~v~v~d~~~~~~~~~~~~~~~~-~--~~-----~~~~ 227 (331)
T 3u4y_A 177 R--P------------FNITFTPDGNFAFVANLIG-------NSIGILETQNPENITLLNAVGTN-N--LP-----GTIV 227 (331)
T ss_dssp S--E------------EEEEECTTSSEEEEEETTT-------TEEEEEECSSTTSCEEEEEEECS-S--CC-----CCEE
T ss_pred C--c------------cceEECCCCCEEEEEeCCC-------CeEEEEECCCCcccceeeeccCC-C--CC-----ceEE
Confidence 0 0 22222 3454 77765432 2247899987775 223221 0 01 1113
Q ss_pred EEECCE-EEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 346 ITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 346 ~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
..-+++ ||+... ..+.+.+||+++.+.+.+
T Consensus 228 ~spdg~~l~v~~~----~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 228 VSRDGSTVYVLTE----STVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp ECTTSSEEEEECS----SEEEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEEc----CCCEEEEEECCCCceeee
Confidence 334555 666643 235799999999877555
No 69
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.26 E-value=1.5 Score=40.52 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCCCceEEEEECC--CCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEe
Q 011957 351 ELYALDPSGALDSAKIKVYDYH--DDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQAD 421 (474)
Q Consensus 351 ~lyv~GG~~~~~~~~v~~yd~~--~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d 421 (474)
.||+.+.. .+.+.+||.+ +.+++.+. .++.+..+ ......-+++.+++++..++.+.+..+|
T Consensus 244 ~l~v~~~~----~~~i~v~d~~~~~~~~~~~~-~~~~~~~~----~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRT----ASLITVFSVSEDGSVLSKEG-FQPTETQP----RGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETT----TTEEEEEEECTTSCCEEEEE-EEECSSSC----CCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecC----CCEEEEEEEcCCCCceEEee-eecCCCcc----ceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 56666532 3578888887 55676653 22222111 1122233555444555455566665555
No 70
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.26 E-value=0.92 Score=44.33 Aligned_cols=158 Identities=11% Similarity=-0.037 Sum_probs=82.6
Q ss_pred CC-EEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DG-CLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+| .|++.+..++ ...++++|+.+.+...+..... ......+ +++.+++++.. + ....++.+|..+
T Consensus 233 dg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~---~---g~~~i~~~d~~~ 300 (415)
T 2hqs_A 233 DGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQ---A---GRPQVYKVNING 300 (415)
T ss_dssp TSSEEEEEECTTS---SCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECT---T---SSCEEEEEETTS
T ss_pred CCCEEEEEEecCC---CceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECC---C---CCcEEEEEECCC
Confidence 44 4554544322 3579999999988766654321 1122222 45544444321 0 134788999988
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
..-..+..... .. ...+ .-+|+..++++.+... ....++|+.+++...+....
T Consensus 301 ~~~~~l~~~~~--~~---------------~~~~~spdG~~l~~~~~~~g~----~~i~~~d~~~~~~~~l~~~~----- 354 (415)
T 2hqs_A 301 GAPQRITWEGS--QN---------------QDADVSSDGKFMVMVSSNGGQ----QHIAKQDLATGGVQVLSSTF----- 354 (415)
T ss_dssp SCCEECCCSSS--EE---------------EEEEECTTSSEEEEEEECSSC----EEEEEEETTTCCEEECCCSS-----
T ss_pred CCEEEEecCCC--cc---------------cCeEECCCCCEEEEEECcCCc----eEEEEEECCCCCEEEecCCC-----
Confidence 77554432111 10 1222 2355544444322110 23378999999887765411
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.....+..-+++.+++++... ....++.+|++.+.-..+.
T Consensus 355 ---~~~~~~~spdg~~l~~~s~~~-~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 355 ---LDETPSLAPNGTMVIYSSSQG-MGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp ---SCEEEEECTTSSEEEEEEEET-TEEEEEEEETTSCCEEECC
T ss_pred ---CcCCeEEcCCCCEEEEEEcCC-CccEEEEEECCCCcEEEee
Confidence 111113344677666655321 1247999999887766654
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.15 E-value=1.9 Score=39.58 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=74.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+.+ ..+.+||..+.
T Consensus 76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~ 139 (312)
T 4ery_A 76 DSNLLVSASDD-----KTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTG 139 (312)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTC
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCC
Confidence 45566666643 4688889887653221 1111111112222 45666667643 56889999876
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+-... ++...... .+++ ..++++++.|+.++ ...+||..+++-...-..... +
T Consensus 140 ~~~~~--~~~~~~~v--------------~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~--~- 193 (312)
T 4ery_A 140 KCLKT--LPAHSDPV--------------SAVHFNRDGSLIVSSSYDG-------LCRIWDTASGQCLKTLIDDDN--P- 193 (312)
T ss_dssp CEEEE--ECCCSSCE--------------EEEEECTTSSEEEEEETTS-------CEEEEETTTCCEEEEECCSSC--C-
T ss_pred EEEEE--ecCCCCcE--------------EEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeeEEeccCC--C-
Confidence 53322 11111110 2222 23566777666553 237888887764332110100 0
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
.. .......+++.++.|+. .+.|..||..+.+-
T Consensus 194 ~~--~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 194 PV--SFVKFSPNGKYILAATL----DNTLKLWDYSKGKC 226 (312)
T ss_dssp CE--EEEEECTTSSEEEEEET----TTEEEEEETTTTEE
T ss_pred ce--EEEEECCCCCEEEEEcC----CCeEEEEECCCCcE
Confidence 00 11123335666666663 35799999987753
No 72
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=95.15 E-value=0.35 Score=42.11 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=80.1
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCC--ceee--c----CCCCCCcceeeEEE-E--CCEEEEEeceecCCCCC
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLN--AWSE--V----SSMSVGRAYSKIGI-L--NNKLYAVGGVTRGPGGL 244 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~--~----~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~ 244 (474)
+++.++|++|+|=| +.+|+++.... .... + +.+|. ..-+|. . ++++|++-|
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~---~IDAa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEET--------
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCC---CccEEEEECCCCeEEEEeC--------
Confidence 34557999999976 56888877552 2211 1 23443 122232 2 689999988
Q ss_pred ccCceEEEEeCCCCceEEccCCCccccc-cccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 245 TPLQSAEVFDPRTGLWSEILSMPFSKAQ-VLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 245 ~~~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
+..++|+..+ +.+ |.+... .+| .....+-++....++++|+|-|. .-++||..+++
T Consensus 73 ---~~yw~~~~~~-----~~~-Pk~i~~~G~p-----~~~~~iDAA~~~~~g~~yfFkg~---------~ywr~d~~~~~ 129 (195)
T 1itv_A 73 ---RQVWVYTGAS-----VLG-PRRLDKLGLG-----ADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQM 129 (195)
T ss_dssp ---TEEEEEETTE-----EEE-EEEGGGGTCC-----TTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTE
T ss_pred ---CEEEEEcCCc-----cCC-CEEeeecccC-----CCccceeEEEEcCCCeEEEEeCC---------EEEEEeCCccc
Confidence 3577787542 111 222111 011 00011113333347899998652 22789887653
Q ss_pred eEE-cCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 324 WVE-MPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 324 W~~-~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
=.. -+..+...|+.......++...++.+|++-| ...++||..+.+
T Consensus 130 ~~~gyPr~i~~~w~Gvp~~idaa~~~~g~~Yffkg------~~y~~~~~~~~~ 176 (195)
T 1itv_A 130 VDPRSASEVDRMFPGVPLDTHDVFQFREKAYFCQD------RFYWRVSSRSEL 176 (195)
T ss_dssp ECGGGCEEHHHHSTTSCSSCSEEEEETTEEEEEET------TEEEEEECCTTC
T ss_pred ccCCCccChhhcCCCCCCCCCEEEEeCCeEEEEeC------CEEEEEECCccE
Confidence 111 0000111122111122236667899999976 478999988765
No 73
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.09 E-value=0.47 Score=44.19 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=36.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCce--eecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAW--SEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
+..||+.+.. ...++++|+.+.+- ..+..-..++ ++++.. +..|| .+... .....+.+||+.
T Consensus 51 g~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~------~~~~~i~v~d~~ 116 (331)
T 3u4y_A 51 CSNVVVTSDF-----CQTLVQIETQLEPPKVVAIQEGQSSM--ADVDITPDDQFAV-TVTGL------NHPFNMQSYSFL 116 (331)
T ss_dssp SCEEEEEEST-----TCEEEEEECSSSSCEEEEEEECSSCC--CCEEECTTSSEEE-ECCCS------SSSCEEEEEETT
T ss_pred CCEEEEEeCC-----CCeEEEEECCCCceeEEecccCCCCc--cceEECCCCCEEE-EecCC------CCcccEEEEECC
Confidence 3458877643 24899999988874 2222222222 112222 34566 33211 011389999999
Q ss_pred CCceEE
Q 011957 257 TGLWSE 262 (474)
Q Consensus 257 t~~W~~ 262 (474)
+++-..
T Consensus 117 ~~~~~~ 122 (331)
T 3u4y_A 117 KNKFIS 122 (331)
T ss_dssp TTEEEE
T ss_pred CCCeEE
Confidence 887544
No 74
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.03 E-value=0.75 Score=45.00 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=92.0
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
....++..++.|+.+ ..+.+||..+.+-... +........+...++++++.|+.+ ..+.+||..
T Consensus 138 ~~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~d---------g~i~vwd~~ 201 (435)
T 1p22_A 138 CLQYDDQKIVSGLRD-----NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSD---------STVRVWDVN 201 (435)
T ss_dssp EEECCSSEEEEEESS-----SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETT---------SCEEEEESS
T ss_pred EEEECCCEEEEEeCC-----CeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCC---------CeEEEEECC
Confidence 344577777777654 4688899887654322 111111223333477777877753 578899998
Q ss_pred CCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 257 TGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 257 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
+++-... +...... .....+++..++.|+.++ ...+||..+..-........
T Consensus 202 ~~~~~~~--~~~h~~~---------------v~~l~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~~---- 253 (435)
T 1p22_A 202 TGEMLNT--LIHHCEA---------------VLHLRFNNGMMVTCSKDR-------SIAVWDMASPTDITLRRVLV---- 253 (435)
T ss_dssp SCCEEEE--ECCCCSC---------------EEEEECCTTEEEEEETTS-------CEEEEECSSSSCCEEEEEEC----
T ss_pred CCcEEEE--EcCCCCc---------------EEEEEEcCCEEEEeeCCC-------cEEEEeCCCCCCceeeeEec----
Confidence 8764322 1111111 222334555666666543 23678887654221100000
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecC
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~ 410 (474)
....... ++..++..++.|+. .+.+..||..+.+-...- . .......++..++++++.|+.
T Consensus 254 ~~~~~v~-~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~---~-----~~~~~v~~~~~~~~~l~~g~~ 314 (435)
T 1p22_A 254 GHRAAVN-VVDFDDKYIVSASG----DRTIKVWNTSTCEFVRTL---N-----GHKRGIACLQYRDRLVVSGSS 314 (435)
T ss_dssp CCSSCEE-EEEEETTEEEEEET----TSEEEEEETTTCCEEEEE---E-----CCSSCEEEEEEETTEEEEEET
T ss_pred CCCCcEE-EEEeCCCEEEEEeC----CCeEEEEECCcCcEEEEE---c-----CCCCcEEEEEeCCCEEEEEeC
Confidence 0111111 33446666666663 357899999877533221 1 111223445556777777774
No 75
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.00 E-value=2.3 Score=39.65 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=74.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++..++.|+.+ ..+.+||..+.+-...-. ..........+ +++.++.|+.+ ..+.+||..+.
T Consensus 133 dg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~ 196 (321)
T 3ow8_A 133 DSQYLATGTHV-----GKVNIFGVESGKKEYSLD--TRGKFILSIAYSPDGKYLASGAID---------GIINIFDIATG 196 (321)
T ss_dssp TSSEEEEECTT-----SEEEEEETTTCSEEEEEE--CSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTT
T ss_pred CCCEEEEEcCC-----CcEEEEEcCCCceeEEec--CCCceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCC
Confidence 55566666543 467788887765322111 11111112222 56777777643 56889999877
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+-... +....... .+++ .-++++.+.|+.++ ...+||..+..-...-...
T Consensus 197 ~~~~~--~~~h~~~v--------------~~l~~spd~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~h------ 247 (321)
T 3ow8_A 197 KLLHT--LEGHAMPI--------------RSLTFSPDSQLLVTASDDG-------YIKIYDVQHANLAGTLSGH------ 247 (321)
T ss_dssp EEEEE--ECCCSSCC--------------CEEEECTTSCEEEEECTTS-------CEEEEETTTCCEEEEECCC------
T ss_pred cEEEE--EcccCCce--------------eEEEEcCCCCEEEEEcCCC-------eEEEEECCCcceeEEEcCC------
Confidence 53221 11111110 2222 23667777776553 2378888776544321101
Q ss_pred cccCcceE-EEECCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 338 RQAGTKLS-ITVEGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 338 ~~~~~~~~-~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
......+ ..-++.+++.|+. .+.|..||..+.+-
T Consensus 248 -~~~v~~~~~sp~~~~l~s~s~----D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 248 -ASWVLNVAFCPDDTHFVSSSS----DKSVKVWDVGTRTC 282 (321)
T ss_dssp -SSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEE
T ss_pred -CCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCEE
Confidence 0111112 2235677777764 35789999987653
No 76
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.83 E-value=1.1 Score=47.95 Aligned_cols=179 Identities=12% Similarity=0.141 Sum_probs=97.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC-cceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG-RAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+- .. ..-+++||+.+++++.......+ ..-.+++.. ++.|++... .-+.+||+.++
T Consensus 417 ~g~lWig-t~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-----------~Gl~~~~~~~~ 479 (781)
T 3v9f_A 417 EGNLWFG-TY-----LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-----------AGVFVIDLASK 479 (781)
T ss_dssp TSCEEEE-ET-----TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-----------TEEEEEESSSS
T ss_pred CCCEEEE-ec-----cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-----------CceEEEeCCCC
Confidence 6778873 21 14689999999998887532111 111222222 477777432 35889999999
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+|+.....+..... .....+++ .-+|.|++-... .|..+||+.+++++.... ..+++.
T Consensus 480 ~~~~~~~~~~~~~~-----------~~~i~~i~~d~~g~lWigt~~--------~Gl~~~~~~~~~~~~~~~--~~~l~~ 538 (781)
T 3v9f_A 480 KVIHHYDTSNSQLL-----------ENFVRSIAQDSEGRFWIGTFG--------GGVGIYTPDMQLVRKFNQ--YEGFCS 538 (781)
T ss_dssp SCCEEECTTTSSCS-----------CSCEEEEEECTTCCEEEEESS--------SCEEEECTTCCEEEEECT--TTTCSC
T ss_pred eEEecccCcccccc-----------cceeEEEEEcCCCCEEEEEcC--------CCEEEEeCCCCeEEEccC--CCCCCC
Confidence 98776533210000 00002222 236788874311 345899999999988754 122222
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceE-EEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEe
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKI-KVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVIT 408 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v-~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~G 408 (474)
.... ..+...+|.|++... ..+ ..||+++++++.....- .++.... .+++. -+|.|++.+
T Consensus 539 ~~i~-~i~~d~~g~lWi~T~------~Glv~~~d~~~~~~~~~~~~~---gl~~~~i-~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 539 NTIN-QIYRSSKGQMWLATG------EGLVCFPSARNFDYQVFQRKE---GLPNTHI-RAISEDKNGNIWAST 600 (781)
T ss_dssp SCEE-EEEECTTSCEEEEET------TEEEEESCTTTCCCEEECGGG---TCSCCCC-CEEEECSSSCEEEEC
T ss_pred CeeE-EEEECCCCCEEEEEC------CCceEEECCCCCcEEEccccC---CCCCceE-EEEEECCCCCEEEEc
Confidence 2111 101223577887642 356 89999999888764211 1222222 23433 356777654
No 77
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=94.78 E-value=2.4 Score=38.87 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=74.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-... ++..........+ ++++++.|+.+ ..+.+||..+.
T Consensus 118 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~~ 181 (312)
T 4ery_A 118 QSNLIVSGSFD-----ESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASG 181 (312)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCC
Confidence 45566666653 4588899887653221 1111111122222 56677777643 56889999876
Q ss_pred ceEEccCCCccccccccchhhccccccceeeE-EEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGM-SSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+-...-.... ... ...+ ...+++..+.|+.++ ....||..+.+-...-..... .
T Consensus 182 ~~~~~~~~~~-~~~--------------~~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~--~- 236 (312)
T 4ery_A 182 QCLKTLIDDD-NPP--------------VSFVKFSPNGKYILAATLDN-------TLKLWDYSKGKCLKTYTGHKN--E- 236 (312)
T ss_dssp CEEEEECCSS-CCC--------------EEEEEECTTSSEEEEEETTT-------EEEEEETTTTEEEEEECSSCC--S-
T ss_pred ceeeEEeccC-CCc--------------eEEEEECCCCCEEEEEcCCC-------eEEEEECCCCcEEEEEEecCC--c-
Confidence 5432211010 000 0112 223556666555442 236788877653322110110 0
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
...........++.+++.|+. .+.|..||..+.+
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~ 270 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSE----DNLVYIWNLQTKE 270 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCT----TSCEEEEETTTCC
T ss_pred eEEEEEEEEeCCCcEEEEECC----CCEEEEEECCCch
Confidence 111111122345777777774 3579999998775
No 78
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.77 E-value=0.64 Score=43.04 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=76.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+......+...........+ +++.++.|+.+ ..+.+||..+.
T Consensus 108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~ 173 (337)
T 1gxr_A 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTT
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCC
Confidence 45555666543 4788999988875443322222222222222 55666666642 46889999887
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
+-...-.. ..... .+++. -+++.++.++.++ ....||+.+.+-...-. . +.
T Consensus 174 ~~~~~~~~--~~~~i--------------~~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~-~----~~ 225 (337)
T 1gxr_A 174 TLVRQFQG--HTDGA--------------SCIDISNDGTKLWTGGLDN-------TVRSWDLREGRQLQQHD-F----TS 225 (337)
T ss_dssp EEEEEECC--CSSCE--------------EEEEECTTSSEEEEEETTS-------EEEEEETTTTEEEEEEE-C----SS
T ss_pred ceeeeeec--ccCce--------------EEEEECCCCCEEEEEecCC-------cEEEEECCCCceEeeec-C----CC
Confidence 54432111 11110 22222 2566666665442 23678887765332211 1 11
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
.. ......-+++++++|+. .+.+..||..+.+=..
T Consensus 226 ~v--~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 226 QI--FSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp CE--EEEEECTTSSEEEEEET----TSCEEEEETTSSCEEE
T ss_pred ce--EEEEECCCCCEEEEEcC----CCcEEEEECCCCCeEE
Confidence 11 11122346677777763 3578999998775433
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.75 E-value=2.8 Score=40.16 Aligned_cols=154 Identities=13% Similarity=0.061 Sum_probs=77.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-----cCCCCCCcceeeEEEE--CC-EEEEEeceecCCCCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-----VSSMSVGRAYSKIGIL--NN-KLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-----~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++.+++.|+.+ ..+.+||..++.... +..+.........+.+ ++ .+++.|+.+ ..+.+
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d---------g~i~i 158 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD---------NVILV 158 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT---------SCEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC---------CEEEE
Confidence 56677777643 468888988875422 1111111111122222 23 567777643 56899
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC-CC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP-VG 330 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~-~~ 330 (474)
||..+++....-........ ..+++. -++++++.|+.++ ...+||+.+++-...- .
T Consensus 159 wd~~~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~- 216 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVHPDT--------------IYSVDWSRDGALICTSCRDK-------RVRVIEPRKGTVVAEKDR- 216 (402)
T ss_dssp EETTTTEEEEEECTTTCCSC--------------EEEEEECTTSSCEEEEETTS-------EEEEEETTTTEEEEEEEC-
T ss_pred EECCCCCccEEEecCCCCCc--------------eEEEEECCCCCEEEEEecCC-------cEEEEeCCCCceeeeecc-
Confidence 99988765432210111111 022232 2566666666443 2378898876543321 1
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
... ... ....+..-++++++.|.. ....+.+..||..+..
T Consensus 217 ~~~---~~~-~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 217 PHE---GTR-PVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp SSC---SSS-CCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred CCC---CCc-ceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 110 010 111134456777777621 1124689999988753
No 80
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.69 E-value=0.92 Score=40.80 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=78.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CC-EEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NN-KLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+++.+++++... .....++.+|..+.+-..+..... ...++.. ++ .|++.++.+ + ...++.+|..+.
T Consensus 95 dg~~l~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~----~---~~~l~~~~~~~~ 163 (297)
T 2ojh_A 95 DGALYAISDKVE-FGKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRD----Q---VFDIYSMDIDSG 163 (297)
T ss_dssp TSSEEEEEECTT-TSSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEET----T---EEEEEEEETTTC
T ss_pred CCCEEEEEEeCC-CCcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCC----C---ceEEEEEECCCC
Confidence 454444444221 135689999988877655543322 1222222 34 455455432 1 235667778777
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
....+...+... ..++ .-+++ |++.+..++. ...+.++..++....+....
T Consensus 164 ~~~~~~~~~~~~-----------------~~~~~s~dg~~l~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~----- 216 (297)
T 2ojh_A 164 VETRLTHGEGRN-----------------DGPDYSPDGRWIYFNSSRTGQ-----MQIWRVRVDGSSVERITDSA----- 216 (297)
T ss_dssp CEEECCCSSSCE-----------------EEEEECTTSSEEEEEECTTSS-----CEEEEEETTSSCEEECCCCS-----
T ss_pred cceEcccCCCcc-----------------ccceECCCCCEEEEEecCCCC-----ccEEEECCCCCCcEEEecCC-----
Confidence 776654432211 1222 23454 4443322321 33356676677776665311
Q ss_pred ccccCcceEEEECCEEEEEcCCCCC-------CCceEEEEECCCCceEEec
Q 011957 337 VRQAGTKLSITVEGELYALDPSGAL-------DSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~-------~~~~v~~yd~~~~~W~~v~ 380 (474)
.... .....-+++.+++++.... ....++.||+++.+...+.
T Consensus 217 -~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 217 -YGDW-FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp -EEEE-EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred -cccC-CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 1111 1122335655555432111 1257999999988876653
No 81
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.66 E-value=3.8 Score=43.64 Aligned_cols=153 Identities=8% Similarity=0.077 Sum_probs=87.1
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCC-CCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSS-MSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
.++.||+... +.+++||+.++++..+.. .+....-.++.. -++.|||. .. ...+.+||+++
T Consensus 140 ~~g~lwi~t~-------~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~---------~~Gl~~~~~~~ 202 (795)
T 4a2l_A 140 SPEQLLISTP-------EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIG-TS---------TDGLYTYSITQ 202 (795)
T ss_dssp ETTEEEEEET-------TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEE-ES---------SSCEEEEETTT
T ss_pred CCCCEEEEEC-------CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEE-EC---------CCCEEEEeCCC
Confidence 4788888532 468999999988876543 111110112222 37888883 21 13578999999
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCC--CC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMG--EG 334 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~--~~ 334 (474)
++++.+...+.. .. ..++. .-++.|++.... -|..+||+.+++++....... ..
T Consensus 203 ~~~~~~~~~~~~-~~--------------i~~i~~d~~g~lwigt~~--------~Gl~~~~~~~~~~~~~~~~~~~~~~ 259 (795)
T 4a2l_A 203 KTFEKVIPILGT-KQ--------------IQAILQQSPTRIWVATEG--------AGLFLINPKTKEIKNYLHSPSNPKS 259 (795)
T ss_dssp CCEEECC----C-CC--------------EEEEEEEETTEEEEEEBS--------SCEEEEETTTTEEEEECCCTTCTTS
T ss_pred CeEEEecCCCCC-Ce--------------eEEEEEcCCCCEEEEECC--------CCeEEEeCCCCeEEEeecCCCCccc
Confidence 999876432211 11 02222 347888884311 345899999999887654211 11
Q ss_pred CCccccCcceEEE-ECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 335 WPVRQAGTKLSIT-VEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 335 ~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
++... ..+++. -+|.|+|-.. ..+..||+.++++..+.
T Consensus 260 l~~~~--i~~i~~d~~g~lWigt~------~Gl~~~~~~~~~~~~~~ 298 (795)
T 4a2l_A 260 ISSNY--IRSLAMDSQNRLWIGTF------NDLNIYHEGTDSFASYS 298 (795)
T ss_dssp CSCSB--EEEEEECTTSCEEEEES------SCEEEEETTTTEEEEEC
T ss_pred cCCCe--EEEEEEcCCCCEEEEeC------ChhheEcCCCCeEEEEe
Confidence 11111 111222 2567776431 26899999999998874
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.63 E-value=0.62 Score=43.97 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=43.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCccee-eEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYS-KIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+++.+..+....... +++.. ++++++.|+.+ ..+.+||..++
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~ 84 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---------RNAYVWTLKGR 84 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---------SCEEEEEEETT
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC---------CeEEEEECCCC
Confidence 56666677643 57889999888776655443222222 22222 56666666642 46889999888
Q ss_pred ceEEcc
Q 011957 259 LWSEIL 264 (474)
Q Consensus 259 ~W~~~~ 264 (474)
++....
T Consensus 85 ~~~~~~ 90 (372)
T 1k8k_C 85 TWKPTL 90 (372)
T ss_dssp EEEEEE
T ss_pred eeeeeE
Confidence 876553
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=94.60 E-value=2.3 Score=39.81 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=35.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.++.....+.........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 63 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~ 128 (372)
T 1k8k_C 63 DSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---------RVISICYFEQE 128 (372)
T ss_dssp TTTEEEEEETT-----SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT---------SSEEEEEEETT
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC---------CEEEEEEecCC
Confidence 45566666543 4688889888876654322221222222222 46666666642 45677777654
Q ss_pred c
Q 011957 259 L 259 (474)
Q Consensus 259 ~ 259 (474)
.
T Consensus 129 ~ 129 (372)
T 1k8k_C 129 N 129 (372)
T ss_dssp T
T ss_pred C
Confidence 4
No 84
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.53 E-value=2.4 Score=39.82 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=88.2
Q ss_pred eeEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC-CCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEE
Q 011957 175 CSIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS-VGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 175 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
..+...++.+|+.|-. ..+++-+=.-.+|+.+.... .+-....++. -++.+|+.|.. ..+++
T Consensus 83 ~~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------g~v~~ 146 (327)
T 2xbg_A 83 NSVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV----------GAIYR 146 (327)
T ss_dssp EEEEEETTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT----------CCEEE
T ss_pred EEEEecCCeEEEEECC------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC----------ccEEE
Confidence 3444457788887521 23444332346899876431 2222233333 46888887642 12433
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEE-cCCCCceEEcCCC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVY-DPDVNSWVEMPVG 330 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~y-d~~t~~W~~~~~~ 330 (474)
-+-.-.+|+.+.... +..- +.++. -++.+|++|. .+ ..++- |....+|+.+..+
T Consensus 147 S~DgG~tW~~~~~~~-~~~~---------------~~~~~~~~~~~~~~g~-~G-------~~~~S~d~gG~tW~~~~~~ 202 (327)
T 2xbg_A 147 TKDSGKNWQALVQEA-IGVM---------------RNLNRSPSGEYVAVSS-RG-------SFYSTWEPGQTAWEPHNRT 202 (327)
T ss_dssp ESSTTSSEEEEECSC-CCCE---------------EEEEECTTSCEEEEET-TS-------SEEEEECTTCSSCEEEECC
T ss_pred EcCCCCCCEEeecCC-Ccce---------------EEEEEcCCCcEEEEEC-CC-------cEEEEeCCCCCceeECCCC
Confidence 333356799886422 1111 33333 2566776542 11 01221 3335789998642
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECC-CCceEEeccCCCCCCCCCCCCCeEEEee-CCEEEEEe
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYH-DDTWKVVVGDVPLPNFTDSESPYLLAGL-LGKLHVIT 408 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~-~~~W~~v~~~~p~~~~~~~r~~~~~~~~-~~~l~v~G 408 (474)
. + ......+..-++.+|+++.. ..++..+.+ ..+|+.+.. | .++.....+.++.. ++++|++|
T Consensus 203 ~----~--~~~~~~~~~~~g~~~~~~~~-----G~~~~s~~D~G~tW~~~~~--~--~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 203 T----S--RRLHNMGFTPDGRLWMIVNG-----GKIAFSDPDNSENWGELLS--P--LRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp S----S--SCEEEEEECTTSCEEEEETT-----TEEEEEETTEEEEECCCBC--T--TSSCCSCEEEEEESSSSCEEEEE
T ss_pred C----C--CccceeEECCCCCEEEEeCC-----ceEEEecCCCCCeeEeccC--C--cccCCcceEEEEecCCCEEEEEe
Confidence 1 1 11122123346788888642 345555433 568988642 1 11111122333322 57888887
Q ss_pred c
Q 011957 409 N 409 (474)
Q Consensus 409 G 409 (474)
+
T Consensus 268 ~ 268 (327)
T 2xbg_A 268 G 268 (327)
T ss_dssp S
T ss_pred C
Confidence 7
No 85
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.34 E-value=2.7 Score=39.04 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+....+. .....+++||+.+.+-+. +........-..++.. ++++|+...... .......+++||+.+.
T Consensus 97 dg~l~v~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 97 DGRLFVCYLGDF-KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY---STNPLGGVYYVSPDFR 172 (333)
T ss_dssp TSCEEEEECTTS-SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB---TTBCCEEEEEECTTSC
T ss_pred CCcEEEEeCCCC-CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc---ccCCCceEEEEeCCCC
Confidence 677888753221 112579999999887653 2322111111222222 578888643210 0112357899999887
Q ss_pred ceEEc
Q 011957 259 LWSEI 263 (474)
Q Consensus 259 ~W~~~ 263 (474)
+...+
T Consensus 173 ~~~~~ 177 (333)
T 2dg1_A 173 TVTPI 177 (333)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 76654
No 86
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=94.30 E-value=0.57 Score=40.74 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=75.4
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--e-eec----CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCc
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--W-SEV----SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQ 248 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W-~~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 248 (474)
+++..+|++|+|-| +.+|+++..... . +.+ +.+|. ...++....++++|++-| +
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-----------~ 70 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-----------D 70 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-----------T
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-----------C
Confidence 34467899999976 567887643210 0 111 23343 222222223689999977 3
Q ss_pred eEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEE
Q 011957 249 SAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 249 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~ 326 (474)
..++||..+ ..+.-|.+.....+. ++. .. +-++.. .++++|+|-|.. -++||..+++=..
T Consensus 71 ~yw~~~~~~----~~~gyPk~I~~~~~g--lP~--~~-IDAA~~~~~~g~~yfFkG~~---------yw~yd~~~~~v~~ 132 (196)
T 3c7x_A 71 KHWVFDEAS----LEPGYPKHIKELGRG--LPT--DK-IDAALFWMPNGKTYFFRGNK---------YYRFNEELRAVDS 132 (196)
T ss_dssp EEEEEETTE----ECTTCSEEGGGTCBS--CCS--SC-CSEEEEETTTTEEEEEETTE---------EEEEETTTTEECT
T ss_pred EEEEEeCCc----ccCCCCeEhhhcCCC--CCC--Cc-ccEEEEEccCCEEEEEECCE---------EEEEeCCcccccC
Confidence 578887542 222222221110000 000 00 022222 368999986632 2789987653211
Q ss_pred c-CCCCCCCCCccccCcceEEEE-CC-EEEEEcCCCCCCCceEEEEECCCCc
Q 011957 327 M-PVGMGEGWPVRQAGTKLSITV-EG-ELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 327 ~-~~~~~~~~p~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
- +..+. .|+......-++... ++ ++|++-| +..++||..+++
T Consensus 133 gyPk~i~-~~~gip~~idaAf~~~~~~~~YfFkg------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 133 EYPKNIK-VWEGIPESPRGSFMGSDEVFTYFYKG------NKYWKFNNQKLK 177 (196)
T ss_dssp TCSEEGG-GSBTCCSSCSEEEECTTSSEEEEEET------TEEEEEETTTTE
T ss_pred CCCccHH-HCCCcCCCcceeEEecCCCEEEEEEC------CEEEEEECCcce
Confidence 0 00011 111111112223333 44 8999976 578999988764
No 87
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.24 E-value=3.5 Score=38.36 Aligned_cols=149 Identities=12% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.++|..+.+-.. +..-+.. -.+++. -+++.++.|+.+ ..+.+||..+.
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~g~~d---------g~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDAGPVD--AWTLAFSPDSQYLATGTHV---------GKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTC--CCCEEECTTSSEEEEECTT---------SEEEEEETTTC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeCCCcc--EEEEEECCCCCEEEEEcCC---------CcEEEEEcCCC
Confidence 44455666543 467888887765322 2111111 111222 256666666642 57888998876
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
.-...-... ... ..+++ .-++++.+.|+.++ ...+||..+++-...-..... +
T Consensus 155 ~~~~~~~~~--~~~--------------v~~~~~spdg~~lasg~~dg-------~i~iwd~~~~~~~~~~~~h~~--~- 208 (321)
T 3ow8_A 155 KKEYSLDTR--GKF--------------ILSIAYSPDGKYLASGAIDG-------IINIFDIATGKLLHTLEGHAM--P- 208 (321)
T ss_dssp SEEEEEECS--SSC--------------EEEEEECTTSSEEEEEETTS-------CEEEEETTTTEEEEEECCCSS--C-
T ss_pred ceeEEecCC--Cce--------------EEEEEECCCCCEEEEEcCCC-------eEEEEECCCCcEEEEEcccCC--c-
Confidence 533211111 111 02222 23667777666553 236888887753322110110 1
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
. ...+..-++++++.|+.+ +.|..||..+..-..
T Consensus 209 --v-~~l~~spd~~~l~s~s~d----g~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 209 --I-RSLTFSPDSQLLVTASDD----GYIKIYDVQHANLAG 242 (321)
T ss_dssp --C-CEEEECTTSCEEEEECTT----SCEEEEETTTCCEEE
T ss_pred --e-eEEEEcCCCCEEEEEcCC----CeEEEEECCCcceeE
Confidence 0 111233467778887743 578999998765443
No 88
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.23 E-value=2.7 Score=37.52 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=78.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCC-CceeecCCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVL-NAWSEVSSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+++.+++++ ...++++|..+ .+...+........-..++. -+++.+++++... .....++.+|..+.
T Consensus 52 dg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 52 DGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE-----FGKSAIYLLPSTGG 120 (297)
T ss_dssp TSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT-----TSSCEEEEEETTCC
T ss_pred CCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC-----CCcceEEEEECCCC
Confidence 455555543 24789999998 77666543332111112222 2555555554321 12467888998877
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEE-eCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
.-..+..... . ..++. -+++ |++.++.++. +..+.+|..++....+.....
T Consensus 121 ~~~~~~~~~~---~---------------~~~~~spdg~~l~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~---- 173 (297)
T 2ojh_A 121 TPRLMTKNLP---S---------------YWHGWSPDGKSFTYCGIRDQV-----FDIYSMDIDSGVETRLTHGEG---- 173 (297)
T ss_dssp CCEECCSSSS---E---------------EEEEECTTSSEEEEEEEETTE-----EEEEEEETTTCCEEECCCSSS----
T ss_pred ceEEeecCCC---c---------------cceEECCCCCEEEEEECCCCc-----eEEEEEECCCCcceEcccCCC----
Confidence 7655543221 1 22222 2343 4433332211 223566677777766654111
Q ss_pred ccccCcceEEEECCE-EEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 337 VRQAGTKLSITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.. . .....-+++ |++.+..+ ....++.++........+.
T Consensus 174 -~~-~-~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 174 -RN-D-GPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp -CE-E-EEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECC
T ss_pred -cc-c-cceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEe
Confidence 11 1 112233555 44444322 2357888887777766653
No 89
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=94.20 E-value=0.26 Score=48.92 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=78.5
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCceee--c----CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccC
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSE--V----SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPL 247 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 247 (474)
+++.++|++|+|-| +.+|+++.....+.. + +.+|.. .. ++... ++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg----------- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG----------- 326 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC-----------
Confidence 45568999999976 456666654433221 1 122321 11 22222 689999977
Q ss_pred ceEEEEeCCCCceEEccCCCcccc--ccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 248 QSAEVFDPRTGLWSEILSMPFSKA--QVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
+.+++|+..+ ..+.-|.+.. ...|. ....+-++... .++++|+|-|. .-++||..+++-
T Consensus 327 ~~~W~~~~~~----~~~gyP~~i~~~~g~P~-----~~~~IDAA~~~~~~~k~yfFkG~---------~yw~yd~~~~~~ 388 (450)
T 1su3_A 327 NKYWAVQGQN----VLHGYPKDIYSSFGFPR-----TVKHIDAALSEENTGKTYFFVAN---------KYWRYDEYKRSM 388 (450)
T ss_dssp TEEEEEETTE----ECTTCSEEHHHHHCCCT-----TCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEE
T ss_pred CEEEEecCCc----ccCCCceeeehhhcCCC-----CCCccceEEEEcCCCeEEEEeCC---------EEEEEeCCCccc
Confidence 3567776431 1221121111 00000 00000022222 26899998662 237888765432
Q ss_pred EEc-CCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 325 VEM-PVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 325 ~~~-~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
..- +..+...+|......-+++..++++|+|-| +..|+||..+.+=..
T Consensus 389 ~~gYPk~I~~~fpgip~~iDAA~~~~g~~YFFkg------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 389 DPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHG------TRQYKFDPKTKRILT 437 (450)
T ss_dssp CSSCSEEHHHHSTTSCSCCSEEEEETTEEEEEET------TEEEEEETTTTEEEE
T ss_pred cCCCCcchhhcCCCCCCCccEEEEcCCeEEEEeC------CEEEEEECCcceEec
Confidence 110 000111122221122235667899999976 578999988776443
No 90
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.19 E-value=3.4 Score=38.05 Aligned_cols=62 Identities=13% Similarity=-0.014 Sum_probs=32.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCC--CCceeecCCCCCCcceeeEEEE-C-CEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPV--LNAWSEVSSMSVGRAYSKIGIL-N-NKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
+..||+.+.. ...+.+||.. +.+++.+..++....-..++.. + ..||+.+.. ...+.+||..
T Consensus 49 g~~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------~~~i~~~d~~ 114 (343)
T 1ri6_A 49 KRYLYVGVRP-----EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLE 114 (343)
T ss_dssp SSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT---------TTEEEEEEEE
T ss_pred CCEEEEeecC-----CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC---------CCeEEEEECC
Confidence 3456665532 1466676665 7777766544332222222222 3 456666542 2467888874
No 91
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.17 E-value=4.6 Score=41.33 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-----CC-EEEEEeceecCCCCCccCceEEEEe
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-----NN-KLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
+..+|+.+. .+.+.+||+.+.+-+.+..++....-..+++. ++ .+||..-. ...+.++|
T Consensus 208 Gr~lyv~~~------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~---------~~~v~ViD 272 (567)
T 1qks_A 208 GRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW---------PPQYVIMD 272 (567)
T ss_dssp SCEEEEEET------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---------TTEEEEEE
T ss_pred CCEEEEEcC------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc---------CCeEEEEE
Confidence 456787642 35799999962222333333333322334443 44 66665432 26788899
Q ss_pred CCCCc
Q 011957 255 PRTGL 259 (474)
Q Consensus 255 ~~t~~ 259 (474)
..+.+
T Consensus 273 ~~t~~ 277 (567)
T 1qks_A 273 GETLE 277 (567)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 77654
No 92
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.11 E-value=1.4 Score=41.36 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=74.3
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
-.+|.+|..+++++.+........-..++.- +++||+.+... ....+.+||+.+++++.+..+.......
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~-------~~~~v~~~~~~~g~~~~~~~~~~~~~~p-- 88 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED-------DEGGIAAWQIDGQTAHKLNTVVAPGTPP-- 88 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET-------TEEEEEEEEEETTEEEEEEEEEEESCCC--
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC-------CCceEEEEEecCCcEEEeeeeecCCCCC--
Confidence 4577888888888765322211111122222 67888776431 1257889999888877665432221110
Q ss_pred chhhccccccceeeEE-EeCC-EEEEeccCCCCcceeccceEEEcCC-CCceEEcCCC-CCCCCCc--ccc--CcceEEE
Q 011957 276 TAFLADLLKPIATGMS-SYRG-RLFVPQSLYFWPFFVDVGGEVYDPD-VNSWVEMPVG-MGEGWPV--RQA--GTKLSIT 347 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~-~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~-t~~W~~~~~~-~~~~~p~--~~~--~~~~~~~ 347 (474)
..++ .-++ .||+.+..+ -...+||+. +++.+.+... ....-|. ... -+..+..
T Consensus 89 ------------~~~a~spdg~~l~~~~~~~-------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 89 ------------AYVAVDEARQLVYSANYHK-------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp ------------SEEEEETTTTEEEEEETTT-------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred ------------EEEEECCCCCEEEEEeCCC-------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 2222 3345 466654222 123567763 3344333210 0000010 000 1111334
Q ss_pred ECCEEEEEcCCCCCCCceEEEEECC-CCceEEe
Q 011957 348 VEGELYALDPSGALDSAKIKVYDYH-DDTWKVV 379 (474)
Q Consensus 348 ~~~~lyv~GG~~~~~~~~v~~yd~~-~~~W~~v 379 (474)
-++++|+.+.. .+.+..||++ +.+...+
T Consensus 150 pdg~l~v~~~~----~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 150 PDNRLAVIDLG----SDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp TTSCEEEEETT----TTEEEEEEECTTSCEEEE
T ss_pred CCCcEEEEeCC----CCEEEEEEECCCCcEEEe
Confidence 46777776542 3578999988 5665544
No 93
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.94 E-value=2 Score=39.49 Aligned_cols=180 Identities=10% Similarity=0.052 Sum_probs=86.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCC--CcceeeEEEE--CCEEEEEeceecCCC---CCccCceEEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSV--GRAYSKIGIL--NNKLYAVGGVTRGPG---GLTPLQSAEVF 253 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~---~~~~~~~~~~y 253 (474)
++.||+.. .+.+++||+.+++.+.+..... +........+ +++||+.. ...... .......++++
T Consensus 64 dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~ 135 (297)
T 3g4e_A 64 SGGYVATI-------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSL 135 (297)
T ss_dssp TSSEEEEE-------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEE
T ss_pred CCCEEEEE-------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEE
Confidence 56676653 2578999999998877654321 2222222333 57887743 211000 00123568888
Q ss_pred eCCCCceEEcc-CCCccccccccchhhccccccceeeEEEe-CC-EEEEeccCCCCcceeccceEEEcC--CCCceEE--
Q 011957 254 DPRTGLWSEIL-SMPFSKAQVLPTAFLADLLKPIATGMSSY-RG-RLFVPQSLYFWPFFVDVGGEVYDP--DVNSWVE-- 326 (474)
Q Consensus 254 d~~t~~W~~~~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~gG~~~~~~~~~~gg~~yd~--~t~~W~~-- 326 (474)
|+.. +...+. .+..| .+++.. ++ .+|+..... -...+||. +++....
T Consensus 136 d~~g-~~~~~~~~~~~p------------------ngi~~spdg~~lyv~~~~~-------~~i~~~~~d~~~G~~~~~~ 189 (297)
T 3g4e_A 136 FPDH-HVKKYFDQVDIS------------------NGLDWSLDHKIFYYIDSLS-------YSVDAFDYDLQTGQISNRR 189 (297)
T ss_dssp CTTS-CEEEEEEEESBE------------------EEEEECTTSCEEEEEEGGG-------TEEEEEEECTTTCCEEEEE
T ss_pred ECCC-CEEEEeeccccc------------------cceEEcCCCCEEEEecCCC-------CcEEEEeccCCCCcccCcE
Confidence 8753 333321 11111 233332 34 578754322 12356654 5665432
Q ss_pred -cCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeC----
Q 011957 327 -MPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLL---- 401 (474)
Q Consensus 327 -~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~---- 401 (474)
+.. .... +....+ .++--+|.||+.... .+.|.+||+++.+-...- .+|. .....+.++
T Consensus 190 ~~~~-~~~~-~~~p~g--~~~d~~G~lwva~~~----~~~v~~~d~~tG~~~~~i-~~p~-------~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 190 SVYK-LEKE-EQIPDG--MCIDAEGKLWVACYN----GGRVIRLDPVTGKRLQTV-KLPV-------DKTTSCCFGGKNY 253 (297)
T ss_dssp EEEE-CCGG-GCEEEE--EEEBTTSCEEEEEET----TTEEEEECTTTCCEEEEE-ECSS-------SBEEEEEEESGGG
T ss_pred EEEE-CCCC-CCCCCe--eEECCCCCEEEEEcC----CCEEEEEcCCCceEEEEE-ECCC-------CCceEEEEeCCCC
Confidence 111 1000 011111 133356889987431 247999999977654321 1221 112334443
Q ss_pred CEEEEEecC
Q 011957 402 GKLHVITND 410 (474)
Q Consensus 402 ~~l~v~GG~ 410 (474)
+.|||....
T Consensus 254 ~~L~vt~~~ 262 (297)
T 3g4e_A 254 SEMYVTCAR 262 (297)
T ss_dssp CEEEEEEBC
T ss_pred CEEEEEcCC
Confidence 478887764
No 94
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=93.88 E-value=6.5 Score=40.51 Aligned_cols=195 Identities=11% Similarity=-0.009 Sum_probs=98.6
Q ss_pred cceEEEEeCCC------CceeecC-CCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCC-CCceEEccCCC
Q 011957 196 MRNVWRYDPVL------NAWSEVS-SMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPR-TGLWSEILSMP 267 (474)
Q Consensus 196 ~~~v~~yd~~t------~~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~p 267 (474)
..+++++|..+ .+-+.+. .-.. ........-+++..++....... ..-...+++++|.. ++.+.....+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~-~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPR-MPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTC-CTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCC-CCCCCcEEEEEEECCCCcccccEEeC
Confidence 46899999988 6655554 2211 11111122255544444432110 00013579999998 56333222221
Q ss_pred cc-ccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC-CCCccccCcce
Q 011957 268 FS-KAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE-GWPVRQAGTKL 344 (474)
Q Consensus 268 ~~-r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~-~~p~~~~~~~~ 344 (474)
.. .... ...+ .-+|++|+.+..++. ...+.+|+.+++++.+...... ..|.-..+...
T Consensus 238 ~~~~~~~--------------~~~~~spdg~l~~~~~~~~~-----~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 238 GGPEEAI--------------AQAEWAPDGSLIVATDRTGW-----WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EETTBCE--------------EEEEECTTSCEEEEECTTSS-----CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred CCCCceE--------------cceEECCCCeEEEEECCCCC-----eEEEEEECCCCceeecccccccccCccccccCce
Confidence 11 1110 2222 337788877655432 2347889989999887652111 00111111111
Q ss_pred EEE-ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEE-EeeCCEEEEEecCCCCceeEEEEee
Q 011957 345 SIT-VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLL-AGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 345 ~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~-~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
++. -++++++.+.. ....++.+|.++++.+.+.. + . .....+ ..-++++++..+.......+..+|+
T Consensus 299 ~~~~~~~~~~~~~~~---~~~~l~~~d~~~~~~~~l~~----~---~-~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 299 FAPLANGLIAVVHGK---GAAVLGILDPESGELVDAAG----P---W-TEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp EEECTTSCEEEEEBS---SSCEEEEEETTTTEEEECCS----S---C-CEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred EeEeCCCEEEEEEEc---CccEEEEEECCCCcEEEecC----C---C-CeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 333 37788777654 34688999998887766642 1 0 111223 3446777777665554455655654
No 95
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.66 E-value=0.74 Score=48.99 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=61.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.||.+ ..+.+||....++..+..+........++.+ + +.+++.|+.+ ..+.+||..
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D---------g~I~vwd~~ 85 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD---------GKVLIWKEE 85 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT---------SCEEEEEEE
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC---------CeEEEEECC
Confidence 45566666543 4678888877777665444332222333333 2 6677777753 578899999
Q ss_pred CCceEEccCCCccccccccchhhccccccceeeEEEe-C--CEEEEeccCCCCcceeccceEEEcCCCC
Q 011957 257 TGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-R--GRLFVPQSLYFWPFFVDVGGEVYDPDVN 322 (474)
Q Consensus 257 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~--~~iyv~gG~~~~~~~~~~gg~~yd~~t~ 322 (474)
++.|..+..+....... .+++.. + +.+++.|+.++ ...+||..++
T Consensus 86 ~~~~~~~~~~~~h~~~V--------------~~v~~sp~~~~~~l~sgs~dg-------~I~vwdl~~~ 133 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASV--------------NSVQWAPHEYGPLLLVASSDG-------KVSVVEFKEN 133 (753)
T ss_dssp TTEEEEEEEECCCSSCE--------------EEEEECCGGGCSEEEEEETTS-------EEEEEECCSS
T ss_pred CCcccccccccCCCCCe--------------EEEEECCCCCCCEEEEEeCCC-------cEEEEEeecC
Confidence 99887665443322221 233332 3 66777676553 2367777665
No 96
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=93.59 E-value=2.1 Score=42.36 Aligned_cols=196 Identities=17% Similarity=0.256 Sum_probs=100.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeec--CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEV--SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+|+|-| +..|+||..+++.... +.+|. --++....+++|+|-| +..+.||+.+.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG-----------~~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG-----------NQFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET-----------TEEEEECTTTC
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCCc---cchheeeCCceEEEEC-----------CEEEEEcCccC
Confidence 678898876 5789999988764421 22332 2344445799999988 45778888765
Q ss_pred ceEEccCCCccccc---cccc----------------hhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEc
Q 011957 259 LWSEILSMPFSKAQ---VLPT----------------AFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYD 318 (474)
Q Consensus 259 ~W~~~~~~p~~r~~---~~~~----------------~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd 318 (474)
+-. +..|.+... ..+. +-.++....+ -++.. .+|++|+|-|.. -+++|
T Consensus 217 ~v~--~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~-DAi~~~~~G~tYFFKg~~---------yWR~~ 284 (460)
T 1qhu_A 217 EVP--PGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVL-SAMVSDNHGATYVFSGSH---------YWRLD 284 (460)
T ss_dssp CCC--TTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCC-CEEEECTTCCEEEEETTE---------EEECT
T ss_pred ccc--CCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCc-CEEEecCCCeEEEEeCCE---------EEEEe
Confidence 322 222211110 0000 0000000011 22333 578999976633 16666
Q ss_pred CCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEecc---C----CCCCC-CCC
Q 011957 319 PDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVG---D----VPLPN-FTD 390 (474)
Q Consensus 319 ~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~---~----~p~~~-~~~ 390 (474)
...+.+.. ..+...||......-++...++++|++-| +.+|+|+..++ .+.+.+ . +..+. .+.
T Consensus 285 ~~~~~~~p--~~Is~~WpglP~~IDAAf~~~~~~yfFkG------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~ 355 (460)
T 1qhu_A 285 TNRDGWHS--WPIAHQWPQGPSTVDAAFSWEDKLYLIQD------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISL 355 (460)
T ss_dssp TGGGCCCC--EEGGGTCTTSCSSCSEEEEETTEEEEEET------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCC
T ss_pred cCCCCcCc--cchhhhccCCCCCCcEEEEECCeEEEEeC------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCcccc
Confidence 65543321 11222333222233346677899999966 57899987542 233221 0 11111 111
Q ss_pred CCCCeEEEe-eCCEEEEEecCCCCceeEEEEeec
Q 011957 391 SESPYLLAG-LLGKLHVITNDANHNIAVLQADVK 423 (474)
Q Consensus 391 ~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~d~~ 423 (474)
.+...++.. -.+++|+|-|. ....+|..
T Consensus 356 ~~IDAA~~~~~~~ktyfFkG~-----~ywryd~~ 384 (460)
T 1qhu_A 356 EAVDAAFVCPGSSRLHIMAGR-----RLWWLDLK 384 (460)
T ss_dssp SCCCEEECCTTCCEEEEEETT-----EEEEEEGG
T ss_pred CcccEEEEeCCCCEEEEEECC-----EEEEEECC
Confidence 223333332 46899999883 34456644
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.53 E-value=0.021 Score=58.98 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCCcHHHHHHhhhcc-CccchhhHHHhhHHHHHh
Q 011957 44 PSLPDEISLQILARI-PRIYYLNVKLVSRAWKAA 76 (474)
Q Consensus 44 ~~LPddl~~~il~rl-p~~~~~~~~~Vck~W~~l 76 (474)
..||||++++||.+| |.++..+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 579999999999999 899999999999999987
No 98
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.42 E-value=0.83 Score=43.16 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCc-ceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGR-AYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.+++.||.+ ..+.+||..+++|.....+.... .....+.+ ++++++.|+.+ ..+.+||..+
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D---------~~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD---------ATTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECC
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC---------CcEEEEEccC
Confidence 66777777754 45778888888775432221111 11122222 56677777753 4677888887
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCc-eEEcCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS-WVEMPVGMGEGW 335 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~-W~~~~~~~~~~~ 335 (474)
+.++.+..+......+ .+++. -++++.+.|+.++ ...+||..++. +..+.. ...
T Consensus 93 ~~~~~~~~~~~h~~~v--------------~~v~~sp~~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~-~~~-- 148 (345)
T 3fm0_A 93 DDFECVTTLEGHENEV--------------KSVAWAPSGNLLATCSRDK-------SVWVWEVDEEDEYECVSV-LNS-- 148 (345)
T ss_dssp C-EEEEEEECCCSSCE--------------EEEEECTTSSEEEEEETTS-------CEEEEEECTTSCEEEEEE-ECC--
T ss_pred CCeEEEEEccCCCCCc--------------eEEEEeCCCCEEEEEECCC-------eEEEEECCCCCCeEEEEE-ecC--
Confidence 7766554333222210 22232 3567777676553 23567765542 322211 100
Q ss_pred CccccCcc-eEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 336 PVRQAGTK-LSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 336 p~~~~~~~-~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
...... .+..-++++++.|+.+ +.+..||.+++.|..+
T Consensus 149 --h~~~v~~~~~~p~~~~l~s~s~d----~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 149 --HTQDVKHVVWHPSQELLASASYD----DTVKLYREEEDDWVCC 187 (345)
T ss_dssp --CCSCEEEEEECSSSSCEEEEETT----SCEEEEEEETTEEEEE
T ss_pred --cCCCeEEEEECCCCCEEEEEeCC----CcEEEEEecCCCEEEE
Confidence 000111 1222356677777643 5788999988888754
No 99
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=93.39 E-value=2.1 Score=37.83 Aligned_cols=156 Identities=11% Similarity=0.133 Sum_probs=77.6
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc-ee--ec----CCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccC
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA-WS--EV----SSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPL 247 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~--~~----~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~ 247 (474)
++...+|++|+|-| +.+|+++..... .. .+ +.+|. ...++... .++++|+|-|
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG----------- 95 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG----------- 95 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-----------
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-----------
Confidence 34557999999976 456776654421 11 11 22332 22222211 2689999987
Q ss_pred ceEEEEeCCCCceEEccCCCccccc-cccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 248 QSAEVFDPRTGLWSEILSMPFSKAQ-VLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
+..++||.. +..+..|.+... .++. ....+ -++.. .++++|+|-|.. -++||..+++=
T Consensus 96 ~~yW~y~~~----~~~~gyPk~I~~~g~p~-----~~~~I-DAAf~~~~~g~~YfFkG~~---------ywr~d~~~~~v 156 (218)
T 1gen_A 96 NEYWIYSAS----TLERGYPKPLTSLGLPP-----DVQRV-DAAFNWSKNKKTYIFAGDK---------FWRYNEVKKKM 156 (218)
T ss_dssp TEEEEEETT----EECTTCSEEGGGGTCCT-----TCCCC-SEEEEETTTTEEEEEETTE---------EEEEETTTTEE
T ss_pred CEEEEEcCc----cccCCCCccHhhcCCCC-----CcCCc-cEEEEEcCCCeEEEEECCE---------EEEEECccccc
Confidence 467888852 333333333222 1110 00000 22232 478999986622 27888876532
Q ss_pred EEc-CCCCCCCCCccccCcceEEEEC--CEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 325 VEM-PVGMGEGWPVRQAGTKLSITVE--GELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 325 ~~~-~~~~~~~~p~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
..- +..+...|+......-++...+ +.+|++-| +..++||..+..
T Consensus 157 ~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg------~~y~~~~~~~~~ 204 (218)
T 1gen_A 157 DPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG------AYYLKLENQSLK 204 (218)
T ss_dssp CSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEET------TEEEEEETTEEE
T ss_pred cCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEEC------CEEEEEECCcee
Confidence 110 0001111111111122244444 89999976 578899886554
No 100
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=93.36 E-value=1.9 Score=40.23 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=71.5
Q ss_pred cceEEEEeCCCCceeecC-CCCCCcceeeEEEE-C-CEEEEEeceecCCCCCccCceEEEEeCCCC---ceEEccCCCcc
Q 011957 196 MRNVWRYDPVLNAWSEVS-SMSVGRAYSKIGIL-N-NKLYAVGGVTRGPGGLTPLQSAEVFDPRTG---LWSEILSMPFS 269 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~ 269 (474)
...+++||+.+.+.+.+. .+..| ..++.- + +.|||.-.. ...+.+||+... ..+.+..++.|
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~---------~~~I~~~~~~~~~~~~~~~~~~~~gP 231 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL---------SHQIVKYWLEGPKKGTAEVLVKIPNP 231 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG---------GTEEEEEESSSTTTTCEEEEEECSSE
T ss_pred CceEEEEeCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC---------CCeEEEEECCCCcCCccceEEeCCCC
Confidence 367999999888765442 11111 123333 2 358887432 257889998752 34433322211
Q ss_pred ccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcc---eeccceEEEcCCCCceEEcCCCCCCCCCccccCcceE
Q 011957 270 KAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPF---FVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLS 345 (474)
Q Consensus 270 r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~---~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~ 345 (474)
.+++ .-+|+|||......... -......+||+....-..+..+. +.+ ......+
T Consensus 232 ------------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~--g~~--~~~~~~~ 289 (322)
T 2fp8_A 232 ------------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP--PFA--GEHFEQI 289 (322)
T ss_dssp ------------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCT--TTT--TSCCCEE
T ss_pred ------------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCC--CCc--cccceEE
Confidence 2333 23678998643200000 00022478998755444544311 111 1112225
Q ss_pred EEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 346 ITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 346 ~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
+..+++|||.+. ..+.|.+|+++.+
T Consensus 290 ~~~~g~L~v~~~----~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 290 QEHDGLLYIGTL----FHGSVGILVYDKK 314 (322)
T ss_dssp EEETTEEEEECS----SCSEEEEEEC---
T ss_pred EEeCCEEEEeec----CCCceEEEecccc
Confidence 567899999864 2368899987644
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.32 E-value=1.5 Score=46.48 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=39.6
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+.+++.|+.+ ..+.+||..+++|..+..+........++.+ + +.+++.|+.+ ..+.+||..+
T Consensus 67 ~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d---------g~I~vwdl~~ 132 (753)
T 3jro_A 67 GTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKE 132 (753)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCS
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC---------CcEEEEEeec
Confidence 5666667654 4688889888887666544332233333333 2 6677777743 5788999877
Q ss_pred C
Q 011957 258 G 258 (474)
Q Consensus 258 ~ 258 (474)
.
T Consensus 133 ~ 133 (753)
T 3jro_A 133 N 133 (753)
T ss_dssp S
T ss_pred C
Confidence 6
No 102
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.32 E-value=9.9 Score=40.53 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=93.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCC----ceee-cC-CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLN----AWSE-VS-SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~----~W~~-~~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++.||+.-.. .+.++++++... .... +. .+..| .++++ .+++||+.-.. ...|++
T Consensus 435 ~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD~~~~~LY~tD~~---------~~~I~v 497 (791)
T 3m0c_C 435 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSV 497 (791)
T ss_dssp TTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred CCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEecCCCCc---ceeeeeecCCcEEEEecC---------CCeEEE
Confidence 6889988532 356778877642 2222 22 22222 12333 36799998542 368999
Q ss_pred EeCCCCceEEcc--CCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC
Q 011957 253 FDPRTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 253 yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~ 328 (474)
+|+....-+.+. .+..| .++++ .++.||+.--... -.++++++....=+.+.
T Consensus 498 ~~ldG~~~~~l~~~~l~~P------------------~gIaVDp~~g~LYwtD~g~~------~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 498 ADTKGVKRKTLFRENGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EETTSSSEEEEEECTTCCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCCEEEEE
T ss_pred EeCCCCeEEEEEeCCCCCc------------------ceEEEecCCCCEEEecCCCC------CeEEEEecCCCceEEEE
Confidence 999876655442 23223 33444 4689999531110 12367777655444433
Q ss_pred CCCCCCCCccccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEE
Q 011957 329 VGMGEGWPVRQAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHV 406 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 406 (474)
. ....+|. + +++ .+++||+... ....|+++|++...=..+... ...+ ...+++++.+++||+
T Consensus 554 ~-~~l~~P~---G---LavD~~~~~LYwaD~----~~~~I~~~d~dG~~~~~v~~~--~~~l---~~P~glav~~~~lYw 617 (791)
T 3m0c_C 554 T-ENIQWPN---G---ITLDLLSGRLYWVDS----KLHSISSIDVNGGNRKTILED--EKRL---AHPFSLAVFEDKVFW 617 (791)
T ss_dssp C-SSCSCEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEEC--TTTT---SSEEEEEEETTEEEE
T ss_pred e-CCCCCce---E---EEEecCCCeEEEEeC----CCCcEEEEecCCCceEEEecC--CCcc---CCCCEEEEeCCEEEE
Confidence 2 1111122 1 333 4789999964 246899999976543333210 0011 124678889999999
Q ss_pred Eec
Q 011957 407 ITN 409 (474)
Q Consensus 407 ~GG 409 (474)
.--
T Consensus 618 tD~ 620 (791)
T 3m0c_C 618 TDI 620 (791)
T ss_dssp EET
T ss_pred EEC
Confidence 875
No 103
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=93.25 E-value=3.5 Score=39.25 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++. ++.|+.+ ..+.+||..+.+-...-..... .-.+++.. ++++++.|+.+ ..+.+||..+.+
T Consensus 217 ~~~-~~~~~~~-----g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDK-FVIPGPK-----GAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDD---------GTLRIWHGGNGN 280 (425)
T ss_dssp TTE-EEEECGG-----GCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETT---------SCEEEECSSSBS
T ss_pred CCE-EEEEcCC-----CeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCc
Confidence 444 5555543 5688999887643221111111 11222222 55666666632 468889987654
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVR 338 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~ 338 (474)
-...- ...... ..+++.. ++ +++.++.++ ...+||..+.+-...-.... .
T Consensus 281 ~~~~~--~~~~~~--------------i~~~~~~~~~-~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~-----~ 331 (425)
T 1r5m_A 281 SQNCF--YGHSQS--------------IVSASWVGDD-KVISCSMDG-------SVRLWSLKQNTLLALSIVDG-----V 331 (425)
T ss_dssp CSEEE--CCCSSC--------------EEEEEEETTT-EEEEEETTS-------EEEEEETTTTEEEEEEECTT-----C
T ss_pred cceEe--cCCCcc--------------EEEEEECCCC-EEEEEeCCC-------cEEEEECCCCcEeEecccCC-----c
Confidence 22111 101111 0233333 44 555555442 23688887765332211000 0
Q ss_pred ccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 339 QAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 339 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.. ......-++.++++|+. .+.|..||..+..
T Consensus 332 ~i-~~~~~s~~~~~l~~~~~----dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 332 PI-FAGRISQDGQKYAVAFM----DGQVNVYDLKKLN 363 (425)
T ss_dssp CE-EEEEECTTSSEEEEEET----TSCEEEEECHHHH
T ss_pred cE-EEEEEcCCCCEEEEEEC----CCeEEEEECCCCc
Confidence 00 11122335677777763 3578889887654
No 104
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.25 E-value=2.3 Score=41.44 Aligned_cols=64 Identities=6% Similarity=0.044 Sum_probs=37.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcc-eeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRA-YSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..++.-..+........ ..+++.. ++++++.|+.+ ..+.+||....
T Consensus 176 ~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---------g~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSME-----GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV---------GNVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSS-----SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS---------SBEEEEESSSC
T ss_pred CCCEEEEEeCC-----CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC---------CcEeeeccCcc
Confidence 45566667654 357788988776555432222211 1222332 56777777753 56888998654
No 105
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.18 E-value=5.3 Score=37.22 Aligned_cols=159 Identities=11% Similarity=0.163 Sum_probs=80.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC-------CCCcc-eeeEEEE-C-CEEEEEeceecCCCCCccCceE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM-------SVGRA-YSKIGIL-N-NKLYAVGGVTRGPGGLTPLQSA 250 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-------p~~r~-~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~ 250 (474)
++.|||..+.. .+.+.+||+....-..+... +.... -..+++- + +.|||.... ...+
T Consensus 154 ~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~---------~~~I 220 (329)
T 3fvz_A 154 TGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE---------NGRI 220 (329)
T ss_dssp TCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------TTEE
T ss_pred CCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------CCEE
Confidence 68899997521 35788999655443333211 11111 2234443 3 899998753 2689
Q ss_pred EEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCC
Q 011957 251 EVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVG 330 (474)
Q Consensus 251 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~ 330 (474)
.+||+.+++....-..+...... .+++...+.+|...|...-.......+.++|+.+++....-..
T Consensus 221 ~~~~~~~G~~~~~~~~~~~~~~~--------------~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 221 QCFKTDTKEFVREIKHASFGRNV--------------FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp EEEETTTCCEEEEECCTTTTTCE--------------EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred EEEECCCCcEEEEEeccccCCCc--------------ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 99999977665432222111110 2222333555554442211111112347888888876554210
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCC
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
.......+ ...++.-+|.|||.... .+.|.+|+++.
T Consensus 287 ~~~~~~~p---~~ia~~~dG~lyvad~~----~~~I~~~~~~~ 322 (329)
T 3fvz_A 287 VRKHFDMP---HDIVASEDGTVYIGDAH----TNTVWKFTLTE 322 (329)
T ss_dssp SSSCCSSE---EEEEECTTSEEEEEESS----SCCEEEEEEEE
T ss_pred CCCccCCe---eEEEECCCCCEEEEECC----CCEEEEEeCCc
Confidence 11100111 12133446789998653 35788888753
No 106
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.05 E-value=0.54 Score=44.73 Aligned_cols=151 Identities=14% Similarity=0.030 Sum_probs=71.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..++.|+.+..+.........+.+ ++++++.|+.+ ..+.+||..++
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---------~~v~vwd~~~~ 87 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD---------RNAYVYEKRPD 87 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT---------SSEEEC-----
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC---------CeEEEEEcCCC
Confidence 56666777653 4577888888888777655433333333333 46667777643 56889999887
Q ss_pred c-eEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCc-eEEcCCCCCCCC
Q 011957 259 L-WSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS-WVEMPVGMGEGW 335 (474)
Q Consensus 259 ~-W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~-W~~~~~~~~~~~ 335 (474)
. |.....+....... .+++. -++++++.|+.++ ...+||..+++ |..+.. +..
T Consensus 88 ~~~~~~~~~~~~~~~v--------------~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~-~~~-- 143 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAA--------------TFVRWSPNEDKFAVGSGAR-------VISVCYFEQENDWWVSKH-LKR-- 143 (377)
T ss_dssp -CCCCEEECCCCSSCE--------------EEEECCTTSSCCEEEESSS-------CEEECCC-----CCCCEE-ECS--
T ss_pred CceeeeeEecccCCce--------------EEEEECCCCCEEEEEecCC-------eEEEEEECCcccceeeeE-eec--
Confidence 6 54433222211110 22222 2556666555443 23667777654 322221 110
Q ss_pred CccccCcceEE-EECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 336 PVRQAGTKLSI-TVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 336 p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
+ .......++ .-++++++.|+.+ +.+..||..+.
T Consensus 144 ~-h~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~ 178 (377)
T 3dwl_C 144 P-LRSTILSLDWHPNNVLLAAGCAD----RKAYVLSAYVR 178 (377)
T ss_dssp S-CCSCEEEEEECTTSSEEEEEESS----SCEEEEEECCS
T ss_pred c-cCCCeEEEEEcCCCCEEEEEeCC----CEEEEEEEEec
Confidence 0 011111122 2356677777643 56888887644
No 107
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.99 E-value=9.8 Score=39.65 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=70.9
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCC--------cceeeEEEECCEEEEEeceecCCCCCc
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVG--------RAYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
+-++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------- 125 (668)
T ss_dssp CCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---------
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---------
Confidence 33467999999764 3578899988876 8864433211 012234667899988643
Q ss_pred cCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 246 PLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 246 ~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
...+..+|.++++ |+.-..-+...... ..+.++.++++|+-.+..... .+-....||+++++
T Consensus 126 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~-------------~~~P~v~~~~v~vg~~~~~~~--~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 126 -DGRLIALDAKTGKAIWSQQTTDPAKPYSI-------------TGAPRVVKGKVIIGNGGAEYG--VRGFVSAYDADTGK 189 (668)
T ss_dssp -TSEEEEEETTTCCEEEEEECSCTTSSCBC-------------CSCCEEETTEEEECCBCTTTC--CBCEEEEEETTTCC
T ss_pred -CCEEEEEECCCCCEeeeeccCCCCCccee-------------cCCCEEECCEEEEeCCCCCcC--CCCEEEEEECCCCc
Confidence 1478999998875 88643211111110 023356789998843321100 00123789998876
Q ss_pred --eEEc
Q 011957 324 --WVEM 327 (474)
Q Consensus 324 --W~~~ 327 (474)
|+.-
T Consensus 190 ~~W~~~ 195 (668)
T 1kv9_A 190 LAWRFY 195 (668)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 8864
No 108
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=92.96 E-value=2 Score=41.31 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=78.5
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCce--eec----CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccC
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNAW--SEV----SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPL 247 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 247 (474)
++..++|++|+|=| +.+|+++.....- ..+ +.+|. ... ++... ++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg----------- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKD----------- 244 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEET-----------
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeC-----------
Confidence 34557999999966 4677776544221 111 23332 122 22233 789999977
Q ss_pred ceEEEEeCCCCc--e-EEccC--CCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCC
Q 011957 248 QSAEVFDPRTGL--W-SEILS--MPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDV 321 (474)
Q Consensus 248 ~~~~~yd~~t~~--W-~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t 321 (474)
+..++|+..... + +.+.. +|..... +-++... .++++|+|-|. .-++||..+
T Consensus 245 ~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~-------------IDAA~~~~~~~~~yfFkG~---------~yw~yd~~~ 302 (365)
T 3ba0_A 245 DKYWLISNLRPEPNYPKSIHSFGFPNFVKK-------------IDAAVFNPRFYRTYFFVDN---------QYWRYDERR 302 (365)
T ss_dssp TEEEECSTTSCTTTCSEETTTTTCCTTCCC-------------CCEEEEETTTTEEEEEETT---------EEEEEETTT
T ss_pred CEEEEEcCCcccCCCCceeeeccCCCCCCC-------------cCEEEEeCCCCEEEEEECC---------EEEEEeCCc
Confidence 346677643211 0 11221 1110001 0022222 25899998662 227888766
Q ss_pred CceEEc-CCCCCCCCCccccCcceEEEE-CCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 322 NSWVEM-PVGMGEGWPVRQAGTKLSITV-EGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 322 ~~W~~~-~~~~~~~~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
++-..- +..+...||......-++... ++++|++-| +..|+||..+.+-..
T Consensus 303 ~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 303 QMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET------TEEEEEETTTTEEEE
T ss_pred ceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC------CEEEEEECCccEEec
Confidence 532110 111111122222222224555 899999976 578999998876544
No 109
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.88 E-value=2.8 Score=39.31 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=72.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-...-+... .....+.+ ++++.+.||.+ ..+.+||..+.
T Consensus 66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d---------~~v~iw~~~~~ 129 (340)
T 1got_B 66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLD---------NICSIYNLKTR 129 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEECSS--SCEEEEEECTTSSEEEEEETT---------CEEEEEETTTC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEeecCC--ccEEEEEECCCCCEEEEEeCC---------CeEEEEECccC
Confidence 55666666654 467888887765322211111 11112222 56666777753 57888998764
Q ss_pred c--eEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCC
Q 011957 259 L--WSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGW 335 (474)
Q Consensus 259 ~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~ 335 (474)
. ......+...... ..++. .-+++ ++.|+.++ ...+||+.+++-...-....
T Consensus 130 ~~~~~~~~~~~~h~~~--------------v~~~~~~~~~~-l~s~s~d~-------~i~~wd~~~~~~~~~~~~h~--- 184 (340)
T 1got_B 130 EGNVRVSRELAGHTGY--------------LSCCRFLDDNQ-IVTSSGDT-------TCALWDIETGQQTTTFTGHT--- 184 (340)
T ss_dssp SBSCEEEEEEECCSSC--------------EEEEEEEETTE-EEEEETTS-------CEEEEETTTTEEEEEECCCS---
T ss_pred CCcceeEEEecCCCcc--------------EEEEEECCCCc-EEEEECCC-------cEEEEECCCCcEEEEEcCCC---
Confidence 3 1111111111111 02222 23455 44454442 23788888775433211010
Q ss_pred CccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 336 PVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 336 p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
... ......-++.+++.|+. .+.|..||..+..-
T Consensus 185 -~~v--~~~~~~~~~~~l~sg~~----d~~v~~wd~~~~~~ 218 (340)
T 1got_B 185 -GDV--MSLSLAPDTRLFVSGAC----DASAKLWDVREGMC 218 (340)
T ss_dssp -SCE--EEEEECTTSSEEEEEET----TSCEEEEETTTCSE
T ss_pred -Cce--EEEEECCCCCEEEEEeC----CCcEEEEECCCCee
Confidence 010 11122335677777774 35789999987653
No 110
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=92.83 E-value=0.25 Score=44.15 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=36.7
Q ss_pred CCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCCCCCccc-----cCcceEEE--ECCEEEEEcCCCCCCCce
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGEGWPVRQ-----AGTKLSIT--VEGELYALDPSGALDSAK 365 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~~~p~~~-----~~~~~~~~--~~~~lyv~GG~~~~~~~~ 365 (474)
++++|+|-|.. -++||..+++=.. -+..+..++|... ...-++.. .++++|++-| +.
T Consensus 129 ~~k~yfFkG~~---------yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg------~~ 193 (227)
T 3lp9_A 129 GKEVYLFKGDQ---------YARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD------DH 193 (227)
T ss_dssp TTEEEEEETTE---------EEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET------TE
T ss_pred CCEEEEEECCE---------EEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC------CE
Confidence 68999987632 2788877553111 0101111233211 11222333 3589999976 57
Q ss_pred EEEEECCCC
Q 011957 366 IKVYDYHDD 374 (474)
Q Consensus 366 v~~yd~~~~ 374 (474)
.|+||..++
T Consensus 194 Ywr~d~~~~ 202 (227)
T 3lp9_A 194 YARVKVTPX 202 (227)
T ss_dssp EEEEECCSS
T ss_pred EEEEECCcc
Confidence 899998776
No 111
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.65 E-value=4.8 Score=42.60 Aligned_cols=146 Identities=8% Similarity=0.035 Sum_probs=71.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++..+++|+.+ ..+.+||..+++....-.-... .-.+++.. +++..+.|+.+ ..+.+||..++
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~- 129 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN- 129 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETT---------SEEEEEEGGGT-
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEecCCC-CEEEEEEeCCCCEEEEEcCC---------CEEEEEECCCC-
Confidence 45555566542 5788999888765432111111 11112222 45555556532 57889998765
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCce--EEcCCCCCCCC
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW--VEMPVGMGEGW 335 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W--~~~~~~~~~~~ 335 (474)
|.....+...... ..+++.. ++.+++.|+.++ ...+||..+..- ..... ..
T Consensus 130 ~~~~~~~~~~~~~--------------v~~~~~~p~~~~~l~~~~~dg-------~v~vwd~~~~~~~~~~~~~-~~--- 184 (814)
T 3mkq_A 130 WALEQTFEGHEHF--------------VMCVAFNPKDPSTFASGCLDR-------TVKVWSLGQSTPNFTLTTG-QE--- 184 (814)
T ss_dssp SEEEEEEECCSSC--------------EEEEEEETTEEEEEEEEETTS-------EEEEEETTCSSCSEEEECC-CT---
T ss_pred ceEEEEEcCCCCc--------------EEEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCcceeEEecC-CC---
Confidence 2222111111111 0233333 456677666543 236788765432 22111 10
Q ss_pred CccccCcceEEEE---CCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 336 PVRQAGTKLSITV---EGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 336 p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.....++.. ++.+++.|+. .+.+..||..+.+
T Consensus 185 ----~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 185 ----RGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (814)
T ss_dssp ----TCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTE
T ss_pred ----CCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCc
Confidence 111112222 6777777774 3579999988765
No 112
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=92.57 E-value=12 Score=39.30 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=70.9
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCC--------cceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVG--------RAYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
-++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+...
T Consensus 66 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------- 129 (689)
T 1yiq_A 66 PIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------- 129 (689)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT----------
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc----------
Confidence 3467999999754 3568999998876 8864433211 112234667899988653
Q ss_pred CceEEEEeCCCCc--eEEccC-CCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 247 LQSAEVFDPRTGL--WSEILS-MPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 247 ~~~~~~yd~~t~~--W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
-..+..+|.++++ |+.-.. -+...... ..+.++.++++|+-.+..... .+-....||.+|++
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~-------------~~sP~v~~g~v~vg~~~~~~~--~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 130 DGRLEAIDAKTGQRAWSVDTRADHKRSYTI-------------TGAPRVVNGKVVIGNGGAEFG--VRGYVTAYDAETGK 194 (689)
T ss_dssp TSEEEEEETTTCCEEEEEECCSCTTSCCBC-------------CSCCEEETTEEEECCBCTTTC--CBCEEEEEETTTCC
T ss_pred CCEEEEEECCCCCEeeeecCcCCCCCCccc-------------cCCcEEECCEEEEEeCCCccC--CCCEEEEEECCCCc
Confidence 1478999998875 886432 11111110 023356799998843321100 01223789999886
Q ss_pred --eEEc
Q 011957 324 --WVEM 327 (474)
Q Consensus 324 --W~~~ 327 (474)
|+.-
T Consensus 195 ~~W~~~ 200 (689)
T 1yiq_A 195 EAWRFY 200 (689)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 8864
No 113
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=92.45 E-value=2.8 Score=43.32 Aligned_cols=154 Identities=11% Similarity=0.013 Sum_probs=82.4
Q ss_pred cceEEEEeCC-CC---ceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccc
Q 011957 196 MRNVWRYDPV-LN---AWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSK 270 (474)
Q Consensus 196 ~~~v~~yd~~-t~---~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r 270 (474)
..+++++|.. +. +.+.+..-. .......+.. ++++|+.+..+ + ...++.+|+.+.+++.+.+.....
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~----~---~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRT----G---WWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTT----S---SCEEEEECTTTCCEEESSCCSSBS
T ss_pred CcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCC----C---CeEEEEEECCCCceeecccccccc
Confidence 3689999998 56 333332211 1111222222 67777766532 1 247999999899998876543221
Q ss_pred cccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceE-EEE
Q 011957 271 AQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLS-ITV 348 (474)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~-~~~ 348 (474)
.. + .+..+ ....+.. ++++++.+.. +. ...+.+|..++..+.+.... ... ..+ ..-
T Consensus 288 ~~--p-~w~~~-----~~~~~~~~~~~~~~~~~~-~~-----~~l~~~d~~~~~~~~l~~~~------~~~--~~~~s~~ 345 (662)
T 3azo_A 288 AG--P-LWTPG-----MRWFAPLANGLIAVVHGK-GA-----AVLGILDPESGELVDAAGPW------TEW--AATLTVS 345 (662)
T ss_dssp SC--C-CCSTT-----CCSEEECTTSCEEEEEBS-SS-----CEEEEEETTTTEEEECCSSC------CEE--EEEEEEE
T ss_pred cC--c-ccccc-----CceEeEeCCCEEEEEEEc-Cc-----cEEEEEECCCCcEEEecCCC------CeE--EEEEecC
Confidence 10 0 00000 0223333 6777765543 22 22366788888877775411 111 113 345
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
++.+++..+.. .....++.+|+++++.+.+.
T Consensus 346 ~~~~~~~~~~~-~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 346 GTRAVGVAASP-RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp TTEEEEEEEET-TEEEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCC-CCCCEEEEEECCCCceEEee
Confidence 66666665422 12347999999998888774
No 114
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.40 E-value=8 Score=40.20 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=81.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCC-ceeecCCCCCCcc---eeeEEE-E--CCEEEEEeceecCCCCCccCceEEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLN-AWSEVSSMSVGRA---YSKIGI-L--NNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~---~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
+|+..+++..+.......++++|+.+. ..+.+........ ...++. - ++++++.+..+ ....++.+
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~-------g~~~l~~~ 340 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD-------GWNHLYLY 340 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT-------SSCEEEEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC-------CccEEEEE
Confidence 554333433333334568999999988 6665432111110 011222 2 67755554321 13578888
Q ss_pred eCCCCceEEccCCCccccccccchhhccccccceeeEEEeCC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCC
Q 011957 254 DPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMG 332 (474)
Q Consensus 254 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~ 332 (474)
|......+.+..-...... .....-++ .||+.+..++... ...+.+|..+++.+.+.. .
T Consensus 341 ~~~~~~~~~l~~~~~~v~~---------------~~~~spdg~~l~~~~~~~~~~~---~~l~~~d~~~~~~~~l~~-~- 400 (706)
T 2z3z_A 341 DTTGRLIRQVTKGEWEVTN---------------FAGFDPKGTRLYFESTEASPLE---RHFYCIDIKGGKTKDLTP-E- 400 (706)
T ss_dssp ETTSCEEEECCCSSSCEEE---------------EEEECTTSSEEEEEESSSCTTC---BEEEEEETTCCCCEESCC-S-
T ss_pred ECCCCEEEecCCCCeEEEe---------------eeEEcCCCCEEEEEecCCCCce---EEEEEEEcCCCCceeccC-C-
Confidence 8777666666432111110 01112234 5666554322110 223677888877666653 1
Q ss_pred CCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 333 EGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 333 ~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
... +.....-+++.+++...+......++.+|.++++
T Consensus 401 ----~~~--~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 401 ----SGM--HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ----SSE--EEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ----Cce--EEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 111 1213344676666654433344679999998876
No 115
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.30 E-value=7.2 Score=36.34 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=68.8
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVL 274 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 274 (474)
..+.+||..+.+-...-.-.. .....+.+ ++++++.|+.+ ..+.+||..+..-... +......
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sg~~d---------~~v~~wd~~~~~~~~~--~~~h~~~-- 228 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACD---------ASAKLWDVREGMCRQT--FTGHESD-- 228 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCSEEEE--ECCCSSC--
T ss_pred CcEEEEECCCCcEEEEEcCCC--CceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCeeEEE--EcCCcCC--
Confidence 468889988875432111111 11112222 56777777753 5788999887653321 1111111
Q ss_pred cchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcc-eEEEECCEE
Q 011957 275 PTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTK-LSITVEGEL 352 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~-~~~~~~~~l 352 (474)
..+++. -++++++.|+.++ ....||..+++-...-. . +....+.. .+..-++++
T Consensus 229 ------------v~~v~~~p~~~~l~s~s~d~-------~v~iwd~~~~~~~~~~~-~----~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 229 ------------INAICFFPNGNAFATGSDDA-------TCRLFDLRADQELMTYS-H----DNIICGITSVSFSKSGRL 284 (340)
T ss_dssp ------------EEEEEECTTSSEEEEEETTS-------CEEEEETTTTEEEEEEC-C----TTCCSCEEEEEECTTSSE
T ss_pred ------------EEEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcEEEEEc-c----CCcccceEEEEECCCCCE
Confidence 022232 3667777776553 23678887664322111 0 11111111 123346778
Q ss_pred EEEcCCCCCCCceEEEEECCCCc
Q 011957 353 YALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 353 yv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
++.|+. .+.|..||..+.+
T Consensus 285 l~~g~~----d~~i~vwd~~~~~ 303 (340)
T 1got_B 285 LLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp EEEEET----TSEEEEEETTTCC
T ss_pred EEEECC----CCeEEEEEcccCc
Confidence 887764 3579999987654
No 116
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.27 E-value=8.5 Score=37.07 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=35.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-. ..+........++.+ ++..++.|+.+ ..+.+||..++
T Consensus 161 ~~~~l~sgs~D-----~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~ 224 (410)
T 1vyh_C 161 SGKLLASCSAD-----MTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTG 224 (410)
T ss_dssp TSSEEEEEETT-----SCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTC
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCC
Confidence 56677777754 34667787665432 222111111222222 45666667643 57899999887
Q ss_pred ce
Q 011957 259 LW 260 (474)
Q Consensus 259 ~W 260 (474)
.-
T Consensus 225 ~~ 226 (410)
T 1vyh_C 225 YC 226 (410)
T ss_dssp CE
T ss_pred cE
Confidence 53
No 117
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.23 E-value=4.7 Score=38.64 Aligned_cols=135 Identities=11% Similarity=0.076 Sum_probs=71.1
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
..+.+||..+++............-.+++.. +++++++|+.+ ..+.+||..+.+-...-. .....
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~--~~~~~--- 178 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN---------GLVDIYDVESQTKLRTMA--GHQAR--- 178 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEEEEC--CCSSC---
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC---------CeEEEEECcCCeEEEEec--CCCCc---
Confidence 5688999988876655433222222222222 56666666642 478899998776433211 11111
Q ss_pred chhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce--EEcCCCCCCCCCccccCcceE-EEECCEE
Q 011957 276 TAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW--VEMPVGMGEGWPVRQAGTKLS-ITVEGEL 352 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W--~~~~~~~~~~~p~~~~~~~~~-~~~~~~l 352 (474)
......++.+++.|+.++ ....||..+..- ..+.. . ......+ ..-++.+
T Consensus 179 ------------v~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~ 231 (401)
T 4aez_A 179 ------------VGCLSWNRHVLSSGSRSG-------AIHHHDVRIANHQIGTLQG-H-------SSEVCGLAWRSDGLQ 231 (401)
T ss_dssp ------------EEEEEEETTEEEEEETTS-------EEEEEETTSSSCEEEEEEC-C-------SSCEEEEEECTTSSE
T ss_pred ------------eEEEEECCCEEEEEcCCC-------CEEEEecccCcceeeEEcC-C-------CCCeeEEEEcCCCCE
Confidence 222334666666666553 236788764321 11111 0 0111112 2226777
Q ss_pred EEEcCCCCCCCceEEEEECCCCce
Q 011957 353 YALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 353 yv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
++.|+. .+.|..||..+.+=
T Consensus 232 l~s~~~----d~~v~iwd~~~~~~ 251 (401)
T 4aez_A 232 LASGGN----DNVVQIWDARSSIP 251 (401)
T ss_dssp EEEEET----TSCEEEEETTCSSE
T ss_pred EEEEeC----CCeEEEccCCCCCc
Confidence 777774 35799999987643
No 118
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.07 E-value=3 Score=38.10 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=39.7
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeec-CCCCCC--cceeeEEEE--CCEEEEEeceecC------CCCCccCceE
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEV-SSMSVG--RAYSKIGIL--NNKLYAVGGVTRG------PGGLTPLQSA 250 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~------~~~~~~~~~~ 250 (474)
+.||+.... +.+++||+. ++...+ ...... ........+ ++++|+....... .........+
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 789987641 368999998 776655 322111 111222223 5788886542100 0001123578
Q ss_pred EEEeCCCCceEEc
Q 011957 251 EVFDPRTGLWSEI 263 (474)
Q Consensus 251 ~~yd~~t~~W~~~ 263 (474)
++||+. .+...+
T Consensus 156 ~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 156 YCFTTD-GQMIQV 167 (314)
T ss_dssp EEECTT-SCEEEE
T ss_pred EEECCC-CCEEEe
Confidence 899987 555543
No 119
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.99 E-value=3.5 Score=38.24 Aligned_cols=63 Identities=8% Similarity=-0.109 Sum_probs=33.1
Q ss_pred eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEE----CCEEEEEcCCCCCCCceEEE
Q 011957 293 YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV----EGELYALDPSGALDSAKIKV 368 (474)
Q Consensus 293 ~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~v~~ 368 (474)
.++.+++.|+.++ ....||..+.+=..... .. .. ...++.. ++..+++|+. .+.+..
T Consensus 178 ~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~-~~----~~---v~~~~~~~~~~~~~~l~~~~~----dg~i~i 238 (357)
T 3i2n_A 178 QEERVVCAGYDNG-------DIKLFDLRNMALRWETN-IK----NG---VCSLEFDRKDISMNKLVATSL----EGKFHV 238 (357)
T ss_dssp -CCCEEEEEETTS-------EEEEEETTTTEEEEEEE-CS----SC---EEEEEESCSSSSCCEEEEEES----TTEEEE
T ss_pred CCCCEEEEEccCC-------eEEEEECccCceeeecC-CC----Cc---eEEEEcCCCCCCCCEEEEECC----CCeEEE
Confidence 3666666665442 23688888765432221 11 11 1113333 5667777653 357888
Q ss_pred EECCCC
Q 011957 369 YDYHDD 374 (474)
Q Consensus 369 yd~~~~ 374 (474)
||..+.
T Consensus 239 ~d~~~~ 244 (357)
T 3i2n_A 239 FDMRTQ 244 (357)
T ss_dssp EEEEEE
T ss_pred EeCcCC
Confidence 887653
No 120
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=91.99 E-value=8.5 Score=36.46 Aligned_cols=147 Identities=7% Similarity=-0.006 Sum_probs=69.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCc--------------ceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGR--------------AYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--------------~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
++..++.|+.+ ..+.+||..+.+-...-..+... .-..++...+..+++|+.+
T Consensus 160 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 226 (425)
T 1r5m_A 160 DGTHIISMDVE-----NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-------- 226 (425)
T ss_dssp TSSEEEEEETT-----CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG--------
T ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--------
Confidence 44445555432 45788888777643322111111 0222333334445666643
Q ss_pred CceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceE
Q 011957 247 LQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV 325 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~ 325 (474)
..+.+||..+.+-...- ...... ..+++. -++++++.|+.++ ...+||..+.+-.
T Consensus 227 -g~i~~~d~~~~~~~~~~--~~~~~~--------------i~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 227 -GAIFVYQITEKTPTGKL--IGHHGP--------------ISVLEFNDTNKLLLSASDDG-------TLRIWHGGNGNSQ 282 (425)
T ss_dssp -GCEEEEETTCSSCSEEE--CCCSSC--------------EEEEEEETTTTEEEEEETTS-------CEEEECSSSBSCS
T ss_pred -CeEEEEEcCCCceeeee--ccCCCc--------------eEEEEECCCCCEEEEEcCCC-------EEEEEECCCCccc
Confidence 57889999875322111 100111 022222 3566666665443 2367887765432
Q ss_pred EcCCCCCCCCCccccCcceEEEE-CCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 326 EMPVGMGEGWPVRQAGTKLSITV-EGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
..-... ... ...++.. ++ +++.++. .+.+..||..+.+-
T Consensus 283 ~~~~~~----~~~---i~~~~~~~~~-~l~~~~~----d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 283 NCFYGH----SQS---IVSASWVGDD-KVISCSM----DGSVRLWSLKQNTL 322 (425)
T ss_dssp EEECCC----SSC---EEEEEEETTT-EEEEEET----TSEEEEEETTTTEE
T ss_pred eEecCC----Ccc---EEEEEECCCC-EEEEEeC----CCcEEEEECCCCcE
Confidence 211101 011 1113333 45 5556553 35899999987653
No 121
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=91.90 E-value=9 Score=36.57 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=75.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
++.+++.|+.+ ..+.+||..+.+-...-. ...........++.+++.|+.+ ..+.+||..+..-
T Consensus 145 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~ 208 (401)
T 4aez_A 145 DGSFLSVGLGN-----GLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLSSGSRS---------GAIHHHDVRIANH 208 (401)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEEEEETT---------SEEEEEETTSSSC
T ss_pred CCCEEEEECCC-----CeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEEEEcCC---------CCEEEEecccCcc
Confidence 55566666543 468889988776433211 1112222333466667777643 5788999874321
Q ss_pred --EEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 261 --SEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 261 --~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
..+... ... ..+++. -++++++.|+.++ ...+||..+.+=...-....
T Consensus 209 ~~~~~~~~---~~~--------------v~~~~~~~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~----- 259 (401)
T 4aez_A 209 QIGTLQGH---SSE--------------VCGLAWRSDGLQLASGGNDN-------VVQIWDARSSIPKFTKTNHN----- 259 (401)
T ss_dssp EEEEEECC---SSC--------------EEEEEECTTSSEEEEEETTS-------CEEEEETTCSSEEEEECCCS-----
T ss_pred eeeEEcCC---CCC--------------eeEEEEcCCCCEEEEEeCCC-------eEEEccCCCCCccEEecCCc-----
Confidence 111111 111 022222 2566777676553 23788887754332111011
Q ss_pred cccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 338 RQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 338 ~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
....+++.. ++.+++.|+.. ..+.+..||..+.+-..
T Consensus 260 --~~v~~~~~~p~~~~ll~~~~gs--~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 260 --AAVKAVAWCPWQSNLLATGGGT--MDKQIHFWNAATGARVN 298 (401)
T ss_dssp --SCCCEEEECTTSTTEEEEECCT--TTCEEEEEETTTCCEEE
T ss_pred --ceEEEEEECCCCCCEEEEecCC--CCCEEEEEECCCCCEEE
Confidence 111112332 45677776411 23579999998775443
No 122
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.79 E-value=4.7 Score=36.83 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=39.6
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE----CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
.+++.++.|+.+ ..+.+||..+...+.+..+..-......+.+ ++++++.|+.+ ..+.+||.
T Consensus 19 ~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D---------~~v~iWd~ 84 (297)
T 2pm7_B 19 YYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD---------GKVMIWKE 84 (297)
T ss_dssp TTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT---------TEEEEEEB
T ss_pred CCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC---------CEEEEEEc
Confidence 356677777654 4577888765443332222111111112222 25677777753 57889999
Q ss_pred CCCceEEcc
Q 011957 256 RTGLWSEIL 264 (474)
Q Consensus 256 ~t~~W~~~~ 264 (474)
.++.|..+.
T Consensus 85 ~~~~~~~~~ 93 (297)
T 2pm7_B 85 ENGRWSQIA 93 (297)
T ss_dssp SSSCBCCCE
T ss_pred CCCceEEEE
Confidence 888776543
No 123
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.76 E-value=3.4 Score=43.82 Aligned_cols=139 Identities=11% Similarity=0.092 Sum_probs=77.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC-cceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG-RAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+|.||+++|.. +-+.+||+.+++++....-... .....+... ++.|++... .-+.+||+++
T Consensus 482 ~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-----------~Gl~~~~~~~ 545 (758)
T 3ott_A 482 EGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-----------GGVMRINPKD 545 (758)
T ss_dssp TSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-----------TEEEEECC--
T ss_pred CCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-----------CceEEEecCC
Confidence 57899866542 3488999999998876421111 111222223 477886431 3478999998
Q ss_pred CceEEcc--CCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCC
Q 011957 258 GLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGW 335 (474)
Q Consensus 258 ~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~ 335 (474)
++++... .+|.. . ..+++.-+|.|++.+. .|..+||+++.+......
T Consensus 546 ~~~~~~~~~gl~~~--~--------------i~~i~~~~g~lWi~t~---------~Gl~~~~~~~~~~~~~~~------ 594 (758)
T 3ott_A 546 ESQQSISFGSFSNN--E--------------ILSMTCVKNSIWVSTT---------NGLWIIDRKTMDARQQNM------ 594 (758)
T ss_dssp CCCCBCCCCC---C--C--------------EEEEEEETTEEEEEES---------SCEEEEETTTCCEEEC--------
T ss_pred CceEEecccCCCcc--c--------------eEEEEECCCCEEEECC---------CCeEEEcCCCceeEEecC------
Confidence 8877553 22211 1 1444556899998553 556899999998876432
Q ss_pred CccccCcceEEE-ECCEEEEEcCCCCCCCceEEEEECCC
Q 011957 336 PVRQAGTKLSIT-VEGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 336 p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
+..... .++.. -+|.||+-| .+.+..|||+.
T Consensus 595 ~~~~~~-~~~~~~~~G~l~fG~------~~Gl~~f~p~~ 626 (758)
T 3ott_A 595 TNKRFT-SLLFDPKEDCVYLGG------ADGFGISHSNL 626 (758)
T ss_dssp CCCCCS-EEEEETTTTEEEEEC------BSEEEEEEC--
T ss_pred CCCcee-eeEEECCCCcEEEec------CCceEEEChhh
Confidence 111111 11222 267776654 24677888864
No 124
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=91.64 E-value=4.4 Score=36.87 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=74.9
Q ss_pred EeCCEEEEE----cCcC--------CCcccceEEEEeCCCCceeecC-CCCCCcceeeEEEE-CCEEEEEeceecCCCCC
Q 011957 179 AVDGCLYVL----GGFS--------RALAMRNVWRYDPVLNAWSEVS-SMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGL 244 (474)
Q Consensus 179 ~~~~~lyv~----GG~~--------~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~ 244 (474)
.-+|.||+. |... .......+++||+. ++...+. .+..+ .+++.. ++++++....
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~~~------- 191 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSDTG------- 191 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEETT-------
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEeCC-------
Confidence 347789886 4311 01113579999987 5544432 22111 122222 4665554432
Q ss_pred ccCceEEEEeCC-CCce-EEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCC
Q 011957 245 TPLQSAEVFDPR-TGLW-SEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDV 321 (474)
Q Consensus 245 ~~~~~~~~yd~~-t~~W-~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t 321 (474)
...+++||+. +++. .....+...... + .+++ .-+|+||+..+ -+..+||+..
T Consensus 192 --~~~i~~~~~~~~g~~~~~~~~~~~~~~~--p------------~~i~~d~~G~l~v~~~---------~~v~~~~~~g 246 (296)
T 3e5z_A 192 --DNATHRYCLNARGETEYQGVHFTVEPGK--T------------DGLRVDAGGLIWASAG---------DGVHVLTPDG 246 (296)
T ss_dssp --TTEEEEEEECSSSCEEEEEEEECCSSSC--C------------CSEEEBTTSCEEEEET---------TEEEEECTTS
T ss_pred --CCeEEEEEECCCCcCcCCCeEeeCCCCC--C------------CeEEECCCCCEEEEcC---------CeEEEECCCC
Confidence 2578899886 4555 211111000000 0 2223 34788998652 3458999986
Q ss_pred CceEEcCCCCCCCCCccccCcceEEEE--C-CEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 322 NSWVEMPVGMGEGWPVRQAGTKLSITV--E-GELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 322 ~~W~~~~~~~~~~~p~~~~~~~~~~~~--~-~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
..-..+.. +.. ...++.- + +.||+... ..+++|++++++-
T Consensus 247 ~~~~~~~~------~~~---~~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 247 DELGRVLT------PQT---TSNLCFGGPEGRTLYMTVS------TEFWSIETNVRGL 289 (296)
T ss_dssp CEEEEEEC------SSC---CCEEEEESTTSCEEEEEET------TEEEEEECSCCBC
T ss_pred CEEEEEEC------CCC---ceeEEEECCCCCEEEEEcC------CeEEEEEcccccc
Confidence 65555543 111 1112221 2 35777643 4799999988753
No 125
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=91.55 E-value=2.3 Score=37.56 Aligned_cols=58 Identities=22% Similarity=0.415 Sum_probs=34.9
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCcee--ec----CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEE
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWS--EV----SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~--~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
.+|++|+|-| +.+|+++.....+. .+ +.+|. ... ++...++++|+|-| +.+++|
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~-~ID-AA~~~~~~~yfFkG-----------~~yw~~ 86 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPS-TVD-AAFSWEDKLYLIQD-----------TKVYVF 86 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCS-SCS-EEEEETTEEEEEET-----------TEEEEE
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCC-Ccc-EEEEECCcEEEecC-----------CEEEEE
Confidence 5889999976 45677765432211 11 22332 122 33345899999977 468889
Q ss_pred eCCC
Q 011957 254 DPRT 257 (474)
Q Consensus 254 d~~t 257 (474)
+..+
T Consensus 87 ~~~~ 90 (219)
T 1hxn_A 87 LTKG 90 (219)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 8754
No 126
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.53 E-value=2.4 Score=39.37 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=81.1
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
-++.||+.+.. ...+++||+.+++.+.+...+. ..-.+++.. ++++|+...... .....+.+||+.+.
T Consensus 54 ~~g~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~dg~l~v~~~~~~-----~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 54 RQGQLFLLDVF-----EGNIFKINPETKEIKRPFVSHK-ANPAAIKIHKDGRLFVCYLGDF-----KSTGGIFAATENGD 122 (333)
T ss_dssp TTSCEEEEETT-----TCEEEEECTTTCCEEEEEECSS-SSEEEEEECTTSCEEEEECTTS-----SSCCEEEEECTTSC
T ss_pred CCCCEEEEECC-----CCEEEEEeCCCCcEEEEeeCCC-CCcceEEECCCCcEEEEeCCCC-----CCCceEEEEeCCCC
Confidence 36778887653 2579999999988776532111 112223332 578888754210 01247899999988
Q ss_pred ceEEc-cCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 LWSEI-LSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~W~~~-~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
.-+.+ ..... .... ..++ .-+|++|+....... .....+.++||+.+++...+.....
T Consensus 123 ~~~~~~~~~~~-~~~~--------------~~i~~d~~g~l~v~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~---- 182 (333)
T 2dg1_A 123 NLQDIIEDLST-AYCI--------------DDMVFDSKGGFYFTDFRGYS-TNPLGGVYYVSPDFRTVTPIIQNIS---- 182 (333)
T ss_dssp SCEEEECSSSS-CCCE--------------EEEEECTTSCEEEEECCCBT-TBCCEEEEEECTTSCCEEEEEEEES----
T ss_pred EEEEEEccCcc-CCcc--------------cceEECCCCCEEEEeccccc-cCCCceEEEEeCCCCEEEEeecCCC----
Confidence 76533 21111 1110 2222 236788885432100 0001234788888777765532110
Q ss_pred ccccCcceEEEECC-EEEEEcCCCCCCCceEEEEECCC
Q 011957 337 VRQAGTKLSITVEG-ELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 337 ~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
.. ...+..-++ .||+... ..+.|++||+++
T Consensus 183 ~~---~~i~~~~dg~~l~v~~~----~~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 VA---NGIALSTDEKVLWVTET----TANRLHRIALED 213 (333)
T ss_dssp SE---EEEEECTTSSEEEEEEG----GGTEEEEEEECT
T ss_pred cc---cceEECCCCCEEEEEeC----CCCeEEEEEecC
Confidence 01 111222344 4777743 135789999864
No 127
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.13 E-value=4.2 Score=38.45 Aligned_cols=180 Identities=12% Similarity=-0.027 Sum_probs=86.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++..++.|+.+ ..+.+||..+++-...-.... ....++.+ ++.+++.|+.+ ..+.+||..+
T Consensus 150 dg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~~~s~~~d---------g~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKD-----FSVKVWDLSQKAVLKSYNAHS--SEVNCVAACPGKDTIFLSCGED---------GRILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS--SCEEEEEECTTCSSCEEEEETT---------SCEEECCTTS
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCceeeeeccC---------CceEEEECCC
Confidence 56677777654 458889988876432211111 11112222 23466777643 4688899887
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGMGEG 334 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~~~~ 334 (474)
.+-...-........ ..+++.. ++.+++.|+.++ ....||+.+.+=. .+.. .
T Consensus 214 ~~~~~~~~~~~~~~~--------------v~~v~~sp~~~~~la~g~~d~-------~i~~wd~~~~~~~~~~~~-~--- 268 (357)
T 4g56_B 214 PKPATRIDFCASDTI--------------PTSVTWHPEKDDTFACGDETG-------NVSLVNIKNPDSAQTSAV-H--- 268 (357)
T ss_dssp SSCBCBCCCTTCCSC--------------EEEEEECTTSTTEEEEEESSS-------CEEEEESSCGGGCEEECC-C---
T ss_pred Cceeeeeeecccccc--------------ccchhhhhcccceEEEeeccc-------ceeEEECCCCcEeEEEec-c---
Confidence 653322211111111 0222322 356677666543 2367887765421 1111 1
Q ss_pred CCccccCcceEEE-ECC-EEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe--eCCEEEEEecC
Q 011957 335 WPVRQAGTKLSIT-VEG-ELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG--LLGKLHVITND 410 (474)
Q Consensus 335 ~p~~~~~~~~~~~-~~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG~ 410 (474)
......++. .++ ++++.|+. .+.|.+||.++.+-....+ +...-.+++. .++++++.||.
T Consensus 269 ----~~~v~~l~~sp~~~~~lasgs~----D~~i~iwd~~~~~~~~~~~--------H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 269 ----SQNITGLAYSYHSSPFLASISE----DCTVAVLDADFSEVFRDLS--------HRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp ----SSCEEEEEECSSSSCCEEEEET----TSCEEEECTTSCEEEEECC--------CSSCEEEEEECSSSTTEEEEEET
T ss_pred ----ceeEEEEEEcCCCCCEEEEEeC----CCEEEEEECCCCcEeEECC--------CCCCEEEEEEeCCCCCEEEEEcC
Confidence 111111222 234 55555653 3578999998875443321 1111122332 36778888874
Q ss_pred CCCceeEE
Q 011957 411 ANHNIAVL 418 (474)
Q Consensus 411 ~~~~~~~~ 418 (474)
++.+.+.
T Consensus 333 -Dg~v~iW 339 (357)
T 4g56_B 333 -DHKVLHH 339 (357)
T ss_dssp -TSCEEEE
T ss_pred -CCeEEEE
Confidence 3344443
No 128
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=91.12 E-value=0.49 Score=45.59 Aligned_cols=66 Identities=8% Similarity=0.004 Sum_probs=33.2
Q ss_pred EEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 178 GAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 178 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
++.++.||+.+. ...++.+|..+.+ |+.-. . ......+..++++|+.++.+ ..+.++|.
T Consensus 6 ~v~~~~v~~gs~------dg~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~d---------g~l~a~d~ 66 (369)
T 2hz6_A 6 TLPETLLFVSTL------DGSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPND---------GSLYTLGS 66 (369)
T ss_dssp --CTTEEEEEET------TSEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTT---------CCEEEC--
T ss_pred eeeCCEEEEEcC------CCEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCC---------CEEEEEEC
Confidence 345777877543 2468899988875 76533 1 11123344567788876532 46889998
Q ss_pred CCC--ceEE
Q 011957 256 RTG--LWSE 262 (474)
Q Consensus 256 ~t~--~W~~ 262 (474)
+++ .|+.
T Consensus 67 ~tG~~~w~~ 75 (369)
T 2hz6_A 67 KNNEGLTKL 75 (369)
T ss_dssp ---CCSEEC
T ss_pred CCCceeeee
Confidence 664 4664
No 129
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.11 E-value=9.6 Score=35.37 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=92.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCC----Cceeec-C-CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVL----NAWSEV-S-SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t----~~W~~~-~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++.||+.... ...++++|+.+ ..-+.+ + .+..| .++++ .+++||+.-.. ...+++
T Consensus 41 ~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~---------~~~I~~ 103 (316)
T 1ijq_A 41 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSV 103 (316)
T ss_dssp TTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred CCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC---------CCEEEE
Confidence 6789998532 35788999876 222222 1 22222 23444 37899997442 257889
Q ss_pred EeCCCCceEEcc--CCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC
Q 011957 253 FDPRTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 253 yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~ 328 (474)
+|+....-+.+. .+..| .++++ .++.||+..-... -..+++++....=+.+.
T Consensus 104 ~~~~g~~~~~~~~~~~~~P------------------~~iavdp~~g~ly~~d~~~~------~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 104 ADTKGVKRKTLFRENGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EETTSSSEEEEEECTTCCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCCEEEEE
T ss_pred EeCCCCceEEEEECCCCCc------------------ceEEeCCCCCEEEEEccCCC------CeEEEEcCCCCCeEEEE
Confidence 998765433332 22222 23344 4788998642110 12367777654333332
Q ss_pred CCCCCCCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEE
Q 011957 329 VGMGEGWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHV 406 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 406 (474)
. ....+|. + +++- +++||+.... .+.|+++|++...=+.+... + .......+++..++.||+
T Consensus 160 ~-~~~~~P~---g---la~d~~~~~lY~~D~~----~~~I~~~d~dg~~~~~~~~~-~----~~~~~P~giav~~~~ly~ 223 (316)
T 1ijq_A 160 T-ENIQWPN---G---ITLDLLSGRLYWVDSK----LHSISSIDVNGGNRKTILED-E----KRLAHPFSLAVFEDKVFW 223 (316)
T ss_dssp C-SSCSCEE---E---EEEETTTTEEEEEETT----TTEEEEEETTSCSCEEEEEC-T----TTTSSEEEEEEETTEEEE
T ss_pred E-CCCCCce---E---EEEeccCCEEEEEECC----CCeEEEEecCCCceEEEeec-C----CccCCcEEEEEECCEEEE
Confidence 2 1111121 1 3333 6899999652 46899999986443333210 0 011224677778899999
Q ss_pred Eec
Q 011957 407 ITN 409 (474)
Q Consensus 407 ~GG 409 (474)
.--
T Consensus 224 ~d~ 226 (316)
T 1ijq_A 224 TDI 226 (316)
T ss_dssp EET
T ss_pred EEC
Confidence 774
No 130
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=91.07 E-value=10 Score=35.66 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=76.2
Q ss_pred EEEEEcCcCCCcccceEEEEeCCCCceeecCCCC-CCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 183 CLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS-VGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 183 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
.+++.|+.+ ..+.+||..+.+....-... ....-.+++.. ++.+++.|+.+ ..+.+||..+..
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR---------GATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT---------TEEEEEETTSCE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC---------CEEEEEECCCCc
Confidence 566666653 46889999888766543321 22222233333 34666666643 578899999876
Q ss_pred eEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVR 338 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~ 338 (474)
...+.......... .+++ .-++++.+.|+.++ ....||.....-..+.. ..
T Consensus 153 ~~~~~~~~~~~~~v--------------~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~-h~------ 204 (383)
T 3ei3_B 153 IQVFAKTDSWDYWY--------------CCVDVSVSRQMLATGDSTG-------RLLLLGLDGHEIFKEKL-HK------ 204 (383)
T ss_dssp EEEEECCCCSSCCE--------------EEEEEETTTTEEEEEETTS-------EEEEEETTSCEEEEEEC-SS------
T ss_pred eEEEeccCCCCCCe--------------EEEEECCCCCEEEEECCCC-------CEEEEECCCCEEEEecc-CC------
Confidence 66554322111110 2222 33566666666543 23678875444333332 10
Q ss_pred ccCcceEE-EECCE-EEEEcCCCCCCCceEEEEECCC
Q 011957 339 QAGTKLSI-TVEGE-LYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 339 ~~~~~~~~-~~~~~-lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
....+++ .-++. +++.|+. .+.|..||..+
T Consensus 205 -~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~ 236 (383)
T 3ei3_B 205 -AKVTHAEFNPRCDWLMATSSV----DATVKLWDLRN 236 (383)
T ss_dssp -SCEEEEEECSSCTTEEEEEET----TSEEEEEEGGG
T ss_pred -CcEEEEEECCCCCCEEEEEeC----CCEEEEEeCCC
Confidence 1111122 22344 7777763 35789999886
No 131
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.07 E-value=6.9 Score=36.08 Aligned_cols=68 Identities=10% Similarity=0.163 Sum_probs=38.3
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+.+++.|+.+ ..+.+||+.+.+|..+..+.........+.+ + +.+++.|+.+ ..+.+||..+
T Consensus 71 ~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D---------~~i~lwd~~~ 136 (316)
T 3bg1_A 71 GNILASCSYD-----RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD---------GAISLLTYTG 136 (316)
T ss_dssp SSCEEEEETT-----SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS---------SCEEEEEECS
T ss_pred CCEEEEEECC-----CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC---------CCEEEEecCC
Confidence 5566666654 4578889888777554322211111222222 2 5566677643 4678888876
Q ss_pred C-ceEEc
Q 011957 258 G-LWSEI 263 (474)
Q Consensus 258 ~-~W~~~ 263 (474)
. .|...
T Consensus 137 ~~~~~~~ 143 (316)
T 3bg1_A 137 EGQWEVK 143 (316)
T ss_dssp SSCEEEC
T ss_pred CCCccee
Confidence 5 57544
No 132
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=91.04 E-value=1.2 Score=41.51 Aligned_cols=68 Identities=9% Similarity=-0.010 Sum_probs=41.2
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-C-CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-N-NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
.++.+|+.++. .+.++++|+.+++....-+.+.....+.++.. + ..+|+.+.. ...+.+||+.+
T Consensus 9 ~~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---------~~~i~~~d~~t 74 (349)
T 1jmx_B 9 AGHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH---------YGDIYGIDLDT 74 (349)
T ss_dssp TTCEEEEEEET-----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---------TTEEEEEETTT
T ss_pred CCCEEEEEeCC-----CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC---------CCcEEEEeCCC
Confidence 46788888754 36799999998875433222220011223332 3 467877642 25799999998
Q ss_pred CceE
Q 011957 258 GLWS 261 (474)
Q Consensus 258 ~~W~ 261 (474)
++-.
T Consensus 75 ~~~~ 78 (349)
T 1jmx_B 75 CKNT 78 (349)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7654
No 133
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=91.03 E-value=17 Score=37.98 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=48.0
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCC--CCC-CcceeeEEEECCEEEEEeceecCCCCCccCceE
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSS--MSV-GRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSA 250 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~--~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 250 (474)
+.+..+++||+... ...++.+|..|.+ |+.-.. .+. .....+.++.+++||+..+... ......+
T Consensus 123 ~~a~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~----~~~~g~v 192 (677)
T 1kb0_A 123 GVALWKGKVYVGAW------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE----YGVRGYI 192 (677)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT----TCCBCEE
T ss_pred CceEECCEEEEEcC------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc----cCCCCEE
Confidence 34557889988642 2578999998876 876422 111 1122234567899988654211 1123679
Q ss_pred EEEeCCCCc--eEEc
Q 011957 251 EVFDPRTGL--WSEI 263 (474)
Q Consensus 251 ~~yd~~t~~--W~~~ 263 (474)
..||.++++ |+.-
T Consensus 193 ~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 193 TAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEEEec
Confidence 999998876 8754
No 134
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=90.92 E-value=9.8 Score=35.15 Aligned_cols=104 Identities=12% Similarity=-0.038 Sum_probs=47.8
Q ss_pred CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCC----------CC
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGAL----------DS 363 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~----------~~ 363 (474)
++++++.++.++ ...+||..+.+-...-. .. ... ...+..-+++.+++|+.... ..
T Consensus 229 ~~~~l~~~~~d~-------~i~v~d~~~~~~~~~~~-~~----~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 229 DLTYFITSSRDT-------NSFLVDVSTLQVLKKYE-TD----CPL--NTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp TSSEEEEEETTS-------EEEEEETTTCCEEEEEE-CS----SCE--EEEEECSSSSEEEEEECCC-------------
T ss_pred CCCEEEEecCCc-------eEEEEECCCCceeeeec-CC----CCc--eeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 566666555442 23678887765443221 10 011 11133344555555543211 11
Q ss_pred ceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEE--eeCCEEEEEecCCCCceeEEEE
Q 011957 364 AKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLA--GLLGKLHVITNDANHNIAVLQA 420 (474)
Q Consensus 364 ~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~ 420 (474)
..+..||..+.+=...- . ........+ .-++++++.|+. ++.+.+..+
T Consensus 295 ~~i~~~d~~~~~~~~~~---~-----~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~ 344 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRV---Q-----GHFGPLNTVAISPQGTSYASGGE-DGFIRLHHF 344 (369)
T ss_dssp CEEEEEETTTCCEEEEE---E-----CCSSCEEEEEECTTSSEEEEEET-TSEEEEEEE
T ss_pred ceeEEEecCCCcchhhe---e-----cccCcEEEEEECCCCCEEEEEcC-CCeEEEEEC
Confidence 26888888776432211 0 011112222 336777777774 444445444
No 135
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.89 E-value=11 Score=35.70 Aligned_cols=154 Identities=10% Similarity=-0.010 Sum_probs=74.5
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCc------ee-ecCCCCCCcceeeEEEE--C-CEEEEEeceecCCCCCccCceEE
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNA------WS-EVSSMSVGRAYSKIGIL--N-NKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~------W~-~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
+.+++.|+.+ ..+.+||..+.+ -. .+..............+ + +.+++.|+.+ ..+.
T Consensus 126 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~v~ 191 (416)
T 2pm9_A 126 DNVLASGGNN-----GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS---------NFAS 191 (416)
T ss_dssp TTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS---------SCEE
T ss_pred CCEEEEEcCC-----CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC---------CCEE
Confidence 5666677653 458888888765 11 11111111111222222 2 5677777753 5689
Q ss_pred EEeCCCCceEEccCCCcc----ccccccchhhccccccceeeEEEe-CC-EEEEeccCCCCcceeccceEEEcCCCCceE
Q 011957 252 VFDPRTGLWSEILSMPFS----KAQVLPTAFLADLLKPIATGMSSY-RG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWV 325 (474)
Q Consensus 252 ~yd~~t~~W~~~~~~p~~----r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~ 325 (474)
+||..+.+-...-..+.. ... ..+++.. ++ .+++.++.++.. ....+||..+..-.
T Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~~d~~~----~~i~~~d~~~~~~~ 253 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSPNSGIKQQ--------------LSVVEWHPKNSTRVATATGSDND----PSILIWDLRNANTP 253 (416)
T ss_dssp EEETTTTEEEEEECCCCCSSCCCCC--------------EEEEEECSSCTTEEEEEECCSSS----CCCCEEETTSTTSC
T ss_pred EEECCCCCcceEEeccccccccCCc--------------eEEEEECCCCCCEEEEEECCCCC----ceEEEEeCCCCCCC
Confidence 999988765433222211 111 0233333 23 466666554310 02367888764311
Q ss_pred EcCCCCCCCCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 326 EMPVGMGEGWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
+.. +. .........++.. ++.+++.|+. .+.|..||.++.+-
T Consensus 254 -~~~-~~---~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 254 -LQT-LN---QGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQ 297 (416)
T ss_dssp -SBC-CC---SCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCE
T ss_pred -cEE-ee---cCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCcc
Confidence 110 10 0011111112222 6777777764 35799999887653
No 136
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=90.78 E-value=3.4 Score=38.50 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCC--CceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVL--NAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.|+.+ ..+.+||... ..++.+..+.........+.. ++.+++.|+.+ ..+.+||..
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D---------~~i~iW~~~ 183 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD---------DTVRIWKDY 183 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT---------SCEEEEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC---------CeEEEEECC
Confidence 56666666654 4577888743 234433222211111222222 46677777753 568888888
Q ss_pred CCceEEccCC
Q 011957 257 TGLWSEILSM 266 (474)
Q Consensus 257 t~~W~~~~~~ 266 (474)
++.|+.+..+
T Consensus 184 ~~~~~~~~~~ 193 (330)
T 2hes_X 184 DDDWECVAVL 193 (330)
T ss_dssp TTEEEEEEEE
T ss_pred CCCeeEEEEc
Confidence 7777765444
No 137
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=90.74 E-value=2.8 Score=36.26 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=69.9
Q ss_pred eEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC--ceE--Ec----cCCCccccccccchhhccccccceeeEEE-e
Q 011957 223 KIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG--LWS--EI----LSMPFSKAQVLPTAFLADLLKPIATGMSS-Y 293 (474)
Q Consensus 223 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~--~W~--~~----~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~ 293 (474)
+++.+++++|+|=| ..+++++.... ... .+ +.+|.... ++... .
T Consensus 11 Ai~~~~g~~yfFkg-----------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~ID----------------Aa~~~~~ 63 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-----------GKYWRFSEGRGSRPQGPFLIADKWPALPRKLD----------------SVFEEPL 63 (195)
T ss_dssp EEEEETTEEEEEET-----------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCS----------------EEEECTT
T ss_pred EEEEeCCEEEEEEC-----------CEEEEEECCccccCCCcEEhhhccCCCCCCcc----------------EEEEECC
Confidence 35567999999987 35677776542 221 11 23332211 22222 3
Q ss_pred CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC-CCCccccCcceEE-EECCEEEEEcCCCCCCCceEEEEEC
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE-GWPVRQAGTKLSI-TVEGELYALDPSGALDSAKIKVYDY 371 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~-~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~ 371 (474)
++++|+|-|.. -++|+..+. .. +..+.. ++|......-++. ..++++|++-| +..|+||.
T Consensus 64 ~~~~yfFkG~~---------yw~~~~~~~--~~-Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg------~~ywr~d~ 125 (195)
T 1itv_A 64 SKKLFFFSGRQ---------VWVYTGASV--LG-PRRLDKLGLGADVAQVTGALRSGRGKMLLFSG------RRLWRFDV 125 (195)
T ss_dssp TCCEEEEETTE---------EEEEETTEE--EE-EEEGGGGTCCTTCCCCCEEEECSTTEEEEEET------TEEEEEET
T ss_pred CCeEEEEeCCE---------EEEEcCCcc--CC-CEEeeecccCCCccceeEEEEcCCCeEEEEeC------CEEEEEeC
Confidence 68899987633 266664321 11 111111 3343211112122 23689999966 57899998
Q ss_pred CCCceEEeccCCC------CCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 372 HDDTWKVVVGDVP------LPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 372 ~~~~W~~v~~~~p------~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
.+++ +...-| -+.++ ..--++...++++|+|-|
T Consensus 126 ~~~~---~~~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg 164 (195)
T 1itv_A 126 KAQM---VDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQD 164 (195)
T ss_dssp TTTE---ECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEET
T ss_pred Cccc---ccCCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeC
Confidence 7753 211001 11122 112345556799999988
No 138
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=90.65 E-value=12 Score=35.83 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=96.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecC--CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVS--SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.||+.--. ...++++++.....+.+. .+..| .++++ .+++||+.-.. ...++++++.
T Consensus 127 ~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~lY~~d~~---------~~~I~~~~~d 189 (386)
T 3v65_B 127 RELVFWSDVT-----LDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG---------TSRIEVANLD 189 (386)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCCEEEEECSSCSCC---CCEEEETTTTEEEEEETT---------TTEEEECBTT
T ss_pred CCeEEEEeCC-----CCcEEEEecCCCCcEEEEeCCCCCc---cEEEEEeCCCeEEEEcCC---------CCeEEEEeCC
Confidence 6889987422 367899999887765542 22222 23344 37899997542 2578888887
Q ss_pred CCceEEcc--CCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCC
Q 011957 257 TGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMG 332 (474)
Q Consensus 257 t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~ 332 (474)
...-+.+. .+..| .++++ .++.||+.--... -..+++|+....=+.+.. ..
T Consensus 190 g~~~~~l~~~~l~~P------------------~giavdp~~g~ly~td~~~~------~~I~r~~~dG~~~~~~~~-~~ 244 (386)
T 3v65_B 190 GAHRKVLLWQSLEKP------------------RAIALHPMEGTIYWTDWGNT------PRIEASSMDGSGRRIIAD-TH 244 (386)
T ss_dssp SCSCEEEECSSCSCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCSCEEEEC-SS
T ss_pred CCceEEeecCCCCCC------------------cEEEEEcCCCeEEEeccCCC------CEEEEEeCCCCCcEEEEE-CC
Confidence 65433332 22222 33344 3788998532110 123778876544333322 11
Q ss_pred CCCCccccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 333 EGWPVRQAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 333 ~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
..+|. + +++ .+++||+... ..+.|+++|++...=+.+.. . . .....++++.++.||+.--
T Consensus 245 ~~~Pn---G---lavd~~~~~lY~aD~----~~~~I~~~d~dG~~~~~~~~---~-~---~~~P~giav~~~~ly~td~ 306 (386)
T 3v65_B 245 LFWPN---G---LTIDYAGRRMYWVDA----KHHVIERANLDGSHRKAVIS---Q-G---LPHPFAITVFEDSLYWTDW 306 (386)
T ss_dssp CSCEE---E---EEEEGGGTEEEEEET----TTTEEEEECTTSCSCEEEEC---S-S---CSSEEEEEEETTEEEEEET
T ss_pred CCCee---e---EEEeCCCCEEEEEEC----CCCEEEEEeCCCCeeEEEEE---C-C---CCCceEEEEECCEEEEeeC
Confidence 11121 1 333 4789999964 24689999987543333321 0 1 1223677788999999864
No 139
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=90.62 E-value=1.1 Score=42.54 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc-eeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA-WSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.+++.|+.+ ..+.+||..+.+ |.....+.........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 66 ~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~ 131 (377)
T 3dwl_C 66 KSNRIVTCSQD-----RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQ 131 (377)
T ss_dssp TTCCEEEEETT-----SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC--
T ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECC
Confidence 45666666643 457888888876 5443322221222222222 46666666643 4688888877
Q ss_pred Cc
Q 011957 258 GL 259 (474)
Q Consensus 258 ~~ 259 (474)
.+
T Consensus 132 ~~ 133 (377)
T 3dwl_C 132 EN 133 (377)
T ss_dssp --
T ss_pred cc
Confidence 64
No 140
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=90.50 E-value=5.5 Score=36.17 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=63.7
Q ss_pred CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCc
Q 011957 229 NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWP 307 (474)
Q Consensus 229 ~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~ 307 (474)
+.||+++... ..+.+||+.++ .+.+.. +. ... .+++. -+|++|+.....
T Consensus 40 ~~l~~~~~~~---------~~i~~~~~~~~-~~~~~~-~~--~~~--------------~~l~~~~dg~l~v~~~~~--- 89 (296)
T 3e5z_A 40 SAVIFSDVRQ---------NRTWAWSDDGQ-LSPEMH-PS--HHQ--------------NGHCLNKQGHLIACSHGL--- 89 (296)
T ss_dssp TEEEEEEGGG---------TEEEEEETTSC-EEEEES-SC--SSE--------------EEEEECTTCCEEEEETTT---
T ss_pred CEEEEEeCCC---------CEEEEEECCCC-eEEEEC-CC--CCc--------------ceeeECCCCcEEEEecCC---
Confidence 3588887643 57899999987 555432 11 110 33333 478888864322
Q ss_pred ceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE----cCC---------CCCCCceEEEEECCCC
Q 011957 308 FFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL----DPS---------GALDSAKIKVYDYHDD 374 (474)
Q Consensus 308 ~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~----GG~---------~~~~~~~v~~yd~~~~ 374 (474)
.+..+||+.+++.+.+..... ..+.... ...++.-+|+||+. |.. .......|+.||++ +
T Consensus 90 ----~~i~~~d~~~g~~~~~~~~~~-~~~~~~~-~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 90 ----RRLERQREPGGEWESIADSFE-GKKLNSP-NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp ----TEEEEECSTTCCEEEEECEET-TEECCCC-CCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred ----CeEEEEcCCCCcEEEEeeccC-CCCCCCC-CCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 245899998888877643111 0011111 11244557889996 321 11123589999988 5
Q ss_pred ceEEe
Q 011957 375 TWKVV 379 (474)
Q Consensus 375 ~W~~v 379 (474)
+...+
T Consensus 163 ~~~~~ 167 (296)
T 3e5z_A 163 TLSAP 167 (296)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 55554
No 141
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=90.49 E-value=8.4 Score=36.21 Aligned_cols=136 Identities=16% Similarity=0.131 Sum_probs=68.7
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE----CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
..+.+||+.+.+-...-.-.. ....+..+ ++.+++.|+.+ ..+.+||..+.+....-... ...
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~g~~l~sgs~D---------g~v~~wd~~~~~~~~~~~~h--~~~ 242 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGCD---------KKAMVWDMRSGQCVQAFETH--ESD 242 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCS--SCEEEEEECCCSSCCEEEEEETT---------SCEEEEETTTCCEEEEECCC--SSC
T ss_pred CcEEEEeCCCCeEEEEEcCCC--CCeEEEEEEeCCCCCEEEEEeCC---------CeEEEEECCCCcEEEEecCC--CCC
Confidence 468889988876432110001 11111222 35677777753 57889999887654321111 111
Q ss_pred cccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcc-eEEEECC
Q 011957 273 VLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTK-LSITVEG 350 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~-~~~~~~~ 350 (474)
..+++. -++.+++.|+.++ ....||..+++-..+-... ....+.. .....++
T Consensus 243 --------------v~~v~~~p~~~~l~s~s~D~-------~v~lwd~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 243 --------------VNSVRYYPSGDAFASGSDDA-------TCRLYDLRADREVAIYSKE-----SIIFGASSVDFSLSG 296 (354)
T ss_dssp --------------EEEEEECTTSSEEEEEETTS-------CEEEEETTTTEEEEEECCT-----TCCSCEEEEEECTTS
T ss_pred --------------eEEEEEeCCCCEEEEEeCCC-------eEEEEECCCCcEEEEEcCC-----CcccceeEEEEeCCC
Confidence 022222 2566777666553 2367888766432221101 0111111 1233467
Q ss_pred EEEEEcCCCCCCCceEEEEECCCCc
Q 011957 351 ELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 351 ~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
++++.|+. .+.|..||..+.+
T Consensus 297 ~~l~~g~~----d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 297 RLLFAGYN----DYTINVWDVLKGS 317 (354)
T ss_dssp SEEEEEET----TSCEEEEETTTCS
T ss_pred CEEEEEEC----CCcEEEEECCCCc
Confidence 77777763 3578999987654
No 142
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=90.38 E-value=9.2 Score=36.03 Aligned_cols=67 Identities=6% Similarity=-0.062 Sum_probs=37.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcce-eeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAY-SKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..++....+......... .+++.. ++++++.|+.+ ..+.+||....
T Consensus 130 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~ 195 (383)
T 3ei3_B 130 NTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGH 195 (383)
T ss_dssp EEEEEEEEETT-----TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSC
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCC
Confidence 34566666543 4688889887666555432211111 122222 56666666642 57899998544
Q ss_pred ceE
Q 011957 259 LWS 261 (474)
Q Consensus 259 ~W~ 261 (474)
.-.
T Consensus 196 ~~~ 198 (383)
T 3ei3_B 196 EIF 198 (383)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 143
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=90.38 E-value=3.9 Score=38.63 Aligned_cols=149 Identities=11% Similarity=-0.002 Sum_probs=72.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++..++.|+.+ ..+.++|..+++-... +........++.+ +..+++.|+.+ ..+.+||..+
T Consensus 138 dg~~l~sgs~d-----~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D---------~~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKD-----ICIKVWDLAQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSED---------NRILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTS
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEE--EcCcCCceEEEEecCCCCCceeeeccc---------cccccccccc
Confidence 66677777654 3588899888753221 1111111112222 33577777753 5688999987
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceE-EcCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV-EMPVGMGEG 334 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~-~~~~~~~~~ 334 (474)
.+-...-........ ..+++. .++++++.|+.++ ...+||..+++=. .+..
T Consensus 202 ~~~~~~~~~~~~~~~--------------~~~~~~~p~~~~~l~sg~~dg-------~v~~wd~~~~~~~~~~~~----- 255 (344)
T 4gqb_B 202 PKPASQIGCSAPGYL--------------PTSLAWHPQQSEVFVFGDENG-------TVSLVDTKSTSCVLSSAV----- 255 (344)
T ss_dssp SSCEEECC----CCC--------------EEEEEECSSCTTEEEEEETTS-------EEEEEESCC--CCEEEEC-----
T ss_pred cceeeeeecceeecc--------------ceeeeecCCCCcceEEeccCC-------cEEEEECCCCcEEEEEcC-----
Confidence 654322111111111 022222 2566777776553 2367888765321 1111
Q ss_pred CCccccCcceEEEE-CC-EEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 335 WPVRQAGTKLSITV-EG-ELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 335 ~p~~~~~~~~~~~~-~~-~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
......+++.. ++ ++++.|+. .+.|.+||..+.+-..
T Consensus 256 ---h~~~v~~v~fsp~g~~~lasgs~----D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 256 ---HSQCVTGLVFSPHSVPFLASLSE----DCSLAVLDSSLSELFR 294 (344)
T ss_dssp ---CSSCEEEEEECSSSSCCEEEEET----TSCEEEECTTCCEEEE
T ss_pred ---CCCCEEEEEEccCCCeEEEEEeC----CCeEEEEECCCCcEEE
Confidence 11111112222 34 45566653 3578999998875433
No 144
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=90.34 E-value=10 Score=34.41 Aligned_cols=174 Identities=11% Similarity=-0.019 Sum_probs=86.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
.+++++.|.. ...+.++|+.+.+ |+.-..-. .......+.-+++|++.+. ..+..||+ ++
T Consensus 4 ~~~~lv~~~~-----~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~~-----------~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSG-----WNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSYS-----------KGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTT-----CSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEECB-----------SEEEEECT-TS
T ss_pred CCcEEEeeCC-----CCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeCC-----------CCEEEECC-CC
Confidence 4677777654 3578888987776 76543211 1122223333788888321 46889999 44
Q ss_pred --ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC-ceEEc-CCCCCCC
Q 011957 259 --LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN-SWVEM-PVGMGEG 334 (474)
Q Consensus 259 --~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-~W~~~-~~~~~~~ 334 (474)
.|+.-.+...... ......+|++++....+. .....+|+... .|+.- ......
T Consensus 66 ~~~W~~~~~~~~~~~----------------~~~~~~dG~~lv~~~~~~------~~v~~vd~~Gk~l~~~~~~~~~~~- 122 (276)
T 3no2_A 66 RELWNIAAPAGCEMQ----------------TARILPDGNALVAWCGHP------STILEVNMKGEVLSKTEFETGIER- 122 (276)
T ss_dssp CEEEEEECCTTCEEE----------------EEEECTTSCEEEEEESTT------EEEEEECTTSCEEEEEEECCSCSS-
T ss_pred CEEEEEcCCCCcccc----------------ccEECCCCCEEEEecCCC------CEEEEEeCCCCEEEEEeccCCCCc-
Confidence 3764432111111 122345777777543211 22367787443 24432 111110
Q ss_pred CCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC-ceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecC
Q 011957 335 WPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD-TWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 335 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~-~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~ 410 (474)
+... ........++.+++... ....|.+||++.+ .|+.-.. ..+ .......++.++|.+..
T Consensus 123 -~~~~-~~~v~~~~~G~~lv~~~----~~~~v~~~d~~G~~~w~~~~~-----~~~----~~~~~~~~g~~~v~~~~ 184 (276)
T 3no2_A 123 -PHAQ-FRQINKNKKGNYLVPLF----ATSEVREIAPNGQLLNSVKLS-----GTP----FSSAFLDNGDCLVACGD 184 (276)
T ss_dssp -GGGS-CSCCEECTTSCEEEEET----TTTEEEEECTTSCEEEEEECS-----SCC----CEEEECTTSCEEEECBT
T ss_pred -cccc-ccCceECCCCCEEEEec----CCCEEEEECCCCCEEEEEECC-----CCc----cceeEcCCCCEEEEeCC
Confidence 1011 11114555677777654 2358999999843 4654321 111 12333446777777663
No 145
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.21 E-value=3.4 Score=38.26 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=38.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE----CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.|+.+ ..+.+||..+++...+..+.........+.. ++++++.|+.+ ..+.+||..
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D---------~~v~iWd~~ 89 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD---------RKVIIWREE 89 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT---------SCEEEECCS
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC---------CEEEEEECC
Confidence 56666677653 4677788776654332222111111122222 25666777643 578899999
Q ss_pred CCceEEcc
Q 011957 257 TGLWSEIL 264 (474)
Q Consensus 257 t~~W~~~~ 264 (474)
+..|..+.
T Consensus 90 ~~~~~~~~ 97 (316)
T 3bg1_A 90 NGTWEKSH 97 (316)
T ss_dssp SSCCCEEE
T ss_pred CCcceEEE
Confidence 88776543
No 146
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=90.12 E-value=13 Score=35.36 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=37.0
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
.++.+++.|+.+ ..+.+||..+.+-...-.... ..-.+++.. ++++++.|+.+ ..+.+||..+.
T Consensus 107 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~ 171 (420)
T 3vl1_A 107 LQMRRFILGTTE-----GDIKVLDSNFNLQREIDQAHV-SEITKLKFFPSGEALISSSQD---------MQLKIWSVKDG 171 (420)
T ss_dssp SSSCEEEEEETT-----SCEEEECTTSCEEEEETTSSS-SCEEEEEECTTSSEEEEEETT---------SEEEEEETTTC
T ss_pred cCCCEEEEEECC-----CCEEEEeCCCcceeeeccccc-CccEEEEECCCCCEEEEEeCC---------CeEEEEeCCCC
Confidence 467777777653 468889988765433311111 111122222 56666666643 57899999865
Q ss_pred c
Q 011957 259 L 259 (474)
Q Consensus 259 ~ 259 (474)
+
T Consensus 172 ~ 172 (420)
T 3vl1_A 172 S 172 (420)
T ss_dssp C
T ss_pred c
Confidence 4
No 147
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=90.04 E-value=8.8 Score=36.95 Aligned_cols=148 Identities=13% Similarity=0.033 Sum_probs=74.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-...-..... ....+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 119 ~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h~~--~V~~v~~~~~~~~l~sgs~D---------~~i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASED-----ATIKVWDYETGDFERTLKGHTD--SVQDISFDHSGKLLASCSAD---------MTIKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESS-----SCEEEEETTTCCCCEEECCCSS--CEEEEEECTTSSEEEEEETT---------SCCCEEETTSS
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEeccCC--cEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCC
Confidence 45667777654 4688899887754322111111 1112222 56777777753 45778888765
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
.-. ..+....... .+++. -++...+.|+.++ ....||..++.-...-....
T Consensus 183 ~~~--~~~~~h~~~V--------------~~v~~~p~~~~l~s~s~D~-------~i~~wd~~~~~~~~~~~~h~----- 234 (410)
T 1vyh_C 183 ECI--RTMHGHDHNV--------------SSVSIMPNGDHIVSASRDK-------TIKMWEVQTGYCVKTFTGHR----- 234 (410)
T ss_dssp CEE--ECCCCCSSCE--------------EEEEECSSSSEEEEEETTS-------EEEEEETTTCCEEEEEECCS-----
T ss_pred cee--EEEcCCCCCE--------------EEEEEeCCCCEEEEEeCCC-------eEEEEECCCCcEEEEEeCCC-----
Confidence 432 2222111110 22222 2566666666553 23678888775332111010
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceE
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWK 377 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 377 (474)
... .......++.+++.|+. .+.|..||..+.+-.
T Consensus 235 ~~v-~~~~~~~~g~~l~s~s~----D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 235 EWV-RMVRPNQDGTLIASCSN----DQTVRVWVVATKECK 269 (410)
T ss_dssp SCE-EEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred ccE-EEEEECCCCCEEEEEcC----CCeEEEEECCCCcee
Confidence 000 01122335677777764 357888898876544
No 148
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=89.98 E-value=3.5 Score=39.92 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=33.6
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
+.|+++|..+++-..+-.+........++.+ ++++++.|+.+ ..+.+||.++++-
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D---------g~v~iWd~~~~~~ 181 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS---------AEVQLWDVQQQKR 181 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC---------CeEEEEEcCCCcE
Confidence 4688888888876654433332222233333 56777777743 5688899887653
No 149
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=89.80 E-value=16 Score=35.98 Aligned_cols=94 Identities=17% Similarity=0.278 Sum_probs=53.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc--e-eec----CCCCCCcceeeEEE-------ECCEEEEEeceecCCCCCcc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA--W-SEV----SSMSVGRAYSKIGI-------LNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W-~~~----~~~p~~r~~~~~~~-------~~~~lyv~GG~~~~~~~~~~ 246 (474)
++++|+|-| +.+|+|+-..-. . +.+ +.+|. . --+|+ .++++|++-|
T Consensus 107 ~g~~yfFkG-------~~yW~~~~~~~~~GYPk~I~~~fpGlp~-~--IDAA~~~~~~~~~~~~~yfFkG---------- 166 (460)
T 1qhu_A 107 HTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPF-P--LDAAVECHRGECQDEGILFFQG---------- 166 (460)
T ss_dssp TTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCS-S--CCEEEEECBBTBSSSEEEEEET----------
T ss_pred CCcEEEEec-------cEEEEEeCCcccCCCCeEhhhccCCCCC-C--eeEEEECCccCCCCCeEEEEec----------
Confidence 589999976 578888643211 0 111 22332 1 22232 2688999987
Q ss_pred CceEEEEeCCCCceEEc--cCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC
Q 011957 247 LQSAEVFDPRTGLWSEI--LSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN 322 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~ 322 (474)
+..+.||..+++...- +.+|. - -++...+|++|+|-|.. -++||..++
T Consensus 167 -~~yw~yd~~~~~~~~~~w~gi~~--i----------------DAA~~~~g~~YfFkG~~---------y~rfd~~~~ 216 (460)
T 1qhu_A 167 -NRKWFWDLTTGTKKERSWPAVGN--C----------------TSALRWLGRYYCFQGNQ---------FLRFNPVSG 216 (460)
T ss_dssp -TEEEEEETTTTEEEEECCTTSCC--C----------------SEEEEETTEEEEEETTE---------EEEECTTTC
T ss_pred -ccEEEEecccceeecccCCCCCc--c----------------chheeeCCceEEEECCE---------EEEEcCccC
Confidence 3578999988765421 12221 1 23445579999987633 278887654
No 150
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.64 E-value=13 Score=39.01 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=88.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCC----Cceeec-C-CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVL----NAWSEV-S-SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t----~~W~~~-~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++.||+.--. ...++++++.+ ..-..+ . .+..| .++++ .+++||+.-.. ...+++
T Consensus 417 ~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~~---------~~~I~v 479 (699)
T 1n7d_A 417 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV---------LGTVSV 479 (699)
T ss_dssp TTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCTT---------TSCEEE
T ss_pred cCeEEEEecC-----CCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEecc---------CCeEEE
Confidence 6789987422 35688888875 111111 1 11112 22333 46889986331 356889
Q ss_pred EeCCCCceEEccC--CCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC
Q 011957 253 FDPRTGLWSEILS--MPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 253 yd~~t~~W~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~ 328 (474)
+|+....-+.+.. +..| .++++ .++.||+..-... -..+++++....-+.+.
T Consensus 480 ~d~dg~~~~~l~~~~~~~P------------------~giavDp~~g~ly~td~~~~------~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp EBSSSCCEEEECCCSSCCC------------------CCEECCSSSSCCEECCCSSS------CCEEBCCSSSCCCCEES
T ss_pred EecCCCceEEEEeCCCCCc------------------ceEEEccCCCcEEEcccCCC------CeEEEEeCCCCCeeEEE
Confidence 9988765444422 2222 22333 3678888531110 11255555443333322
Q ss_pred CCCCCCCCccccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEE
Q 011957 329 VGMGEGWPVRQAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHV 406 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 406 (474)
. ....+|. + +++ .+++||+... ....|+++|++...-+.+... + . ......++++.++.||+
T Consensus 536 ~-~~l~~Pn---G---lavd~~~~~LY~aD~----~~~~I~~~d~dG~~~~~~~~~-~-~---~~~~P~glavd~~~lyw 599 (699)
T 1n7d_A 536 T-ENIQWPN---G---ITLDLLSGRLYWVDS----KLHSISSIDVNGGNRKTILED-E-K---RLAHPFSLAVFEDKVFW 599 (699)
T ss_dssp C-SSCSSCC---C---EEECTTTCCEEEEET----TTTEEEEECSSSSCCEEECCC-S-S---SCSSCCCCEEETTEEEE
T ss_pred e-CCCCCcc---E---EEEeccCCEEEEEec----CCCeEEEEccCCCceEEEEec-C-C---cCCCceEeEEECCEEEE
Confidence 1 0111121 1 333 3689999964 246899999976544444211 0 0 11223567778899999
Q ss_pred Eec
Q 011957 407 ITN 409 (474)
Q Consensus 407 ~GG 409 (474)
.-.
T Consensus 600 td~ 602 (699)
T 1n7d_A 600 TDI 602 (699)
T ss_dssp ECS
T ss_pred EeC
Confidence 874
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=89.39 E-value=22 Score=36.81 Aligned_cols=158 Identities=12% Similarity=0.054 Sum_probs=78.4
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC-ceEEccCCCccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG-LWSEILSMPFSKAQ 272 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~r~~ 272 (474)
...++++|..+.+-..+............+.. +++..+++..+ .......+.++|+.+. ..+.+.........
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 46799999998876555432111122222222 55544444432 1112357899999988 66655321111000
Q ss_pred cccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECC
Q 011957 273 VLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEG 350 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~ 350 (474)
. . . ......- +|++++.+..++. ...+.+|...+....+.... ++ ... ..+..-++
T Consensus 310 ~-~-------~---~~~~~sp~~dg~~l~~~~~~g~-----~~l~~~~~~~~~~~~l~~~~---~~--v~~-~~~~spdg 367 (706)
T 2z3z_A 310 E-P-------L---HPLTFLPGSNNQFIWQSRRDGW-----NHLYLYDTTGRLIRQVTKGE---WE--VTN-FAGFDPKG 367 (706)
T ss_dssp C-C-------C---SCCEECTTCSSEEEEEECTTSS-----CEEEEEETTSCEEEECCCSS---SC--EEE-EEEECTTS
T ss_pred C-c-------c---CCceeecCCCCEEEEEEccCCc-----cEEEEEECCCCEEEecCCCC---eE--EEe-eeEEcCCC
Confidence 0 0 0 0112233 6776655544432 22366776666677765411 01 100 00122234
Q ss_pred -EEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 351 -ELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 351 -~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.||+.+..+......|+.+|.++.+.+.+
T Consensus 368 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 368 TRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp SEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred CEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 56666554322245899999988876665
No 152
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.37 E-value=14 Score=34.67 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=17.0
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
++++++.|+. .+.|.+||..+.+-
T Consensus 302 ~~~~l~~~~~----dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 302 SGETLCSAGW----DGKLRFWDVKTKER 325 (397)
T ss_dssp SSSEEEEEET----TSEEEEEETTTTEE
T ss_pred CCCEEEEEeC----CCeEEEEEcCCCce
Confidence 5667777663 35899999987643
No 153
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=89.26 E-value=21 Score=36.37 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=46.9
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeec-CCCCCC-cceeeEEEECCEEEEEeceecCCCCCccCceEEE
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEV-SSMSVG-RAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~-~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
.+..+++||+... ...++.+|..|.+ |+.- ...+.. ....+.++.+++||+..+... ......+..
T Consensus 111 ~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~----~~~~g~v~a 180 (571)
T 2ad6_A 111 LAYGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE----LGVRGAVNA 180 (571)
T ss_dssp CEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGG----GTCCCEEEE
T ss_pred cEEECCEEEEEeC------CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCc----cCCCCEEEE
Confidence 4457899998743 2578999998875 8753 221111 112233557899988654211 012357999
Q ss_pred EeCCCCc--eEEc
Q 011957 253 FDPRTGL--WSEI 263 (474)
Q Consensus 253 yd~~t~~--W~~~ 263 (474)
||.++++ |+.-
T Consensus 181 ~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 181 FDLKTGELKWRAF 193 (571)
T ss_dssp EETTTCCEEEEEE
T ss_pred EECCCCcEEEEEc
Confidence 9998765 8754
No 154
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=89.15 E-value=22 Score=36.49 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=69.4
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeC-CCCc--eeecCCCCCC-----c---ceeeEEE--ECCE----EEEEecee
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDP-VLNA--WSEVSSMSVG-----R---AYSKIGI--LNNK----LYAVGGVT 238 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~t~~--W~~~~~~p~~-----r---~~~~~~~--~~~~----lyv~GG~~ 238 (474)
+-++.++.||+.... .+.++.+|. .+.+ |+.-...+.. + .....++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 344579999998652 246899999 7765 8875433211 1 1123444 5777 887543
Q ss_pred cCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEE
Q 011957 239 RGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEV 316 (474)
Q Consensus 239 ~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~ 316 (474)
...+..+|.++++ |+.-..-+...... ..+-++.++++|+-.+..... .+-....
T Consensus 130 --------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~-------------~ssP~v~~g~V~vg~~g~e~g--~~g~v~A 186 (599)
T 1w6s_A 130 --------DGNVAALNAETGETVWKVENSDIKVGSTL-------------TIAPYVVKDKVIIGSSGAELG--VRGYLTA 186 (599)
T ss_dssp --------TSEEEEEETTTCCEEEEEECCCGGGTCBC-------------CSCCEEETTEEEECCBCGGGT--CCCEEEE
T ss_pred --------CCEEEEEECCCCCEEEeecCCCCCcccee-------------ecCCEEECCEEEEEecccccC--CCCeEEE
Confidence 1478899998875 87532211111110 023356789998854311100 0012378
Q ss_pred EcCCCCc--eEEcC
Q 011957 317 YDPDVNS--WVEMP 328 (474)
Q Consensus 317 yd~~t~~--W~~~~ 328 (474)
||.++++ |+.-.
T Consensus 187 ~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 187 YDVKTGEQVWRAYA 200 (599)
T ss_dssp EETTTCCEEEEEES
T ss_pred EECCCCcEEEEEcC
Confidence 9998876 87643
No 155
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=89.04 E-value=16 Score=34.73 Aligned_cols=100 Identities=8% Similarity=-0.049 Sum_probs=49.9
Q ss_pred CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCE-EEEEcCCCCCCCceEEEEECC
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGE-LYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~ 372 (474)
++++.+.|+.++ ...+||..+.+-........ .... ...+..-++. +++.|+. .+.|..||..
T Consensus 258 ~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~---~~~v--~~~~~~~~~~~~l~~g~~----dg~i~vwd~~ 321 (420)
T 3vl1_A 258 YGKYVIAGHVSG-------VITVHNVFSKEQTIQLPSKF---TCSC--NSLTVDGNNANYIYAGYE----NGMLAQWDLR 321 (420)
T ss_dssp TTEEEEEEETTS-------CEEEEETTTCCEEEEECCTT---SSCE--EEEEECSSCTTEEEEEET----TSEEEEEETT
T ss_pred CCCEEEEEcCCC-------eEEEEECCCCceeEEccccc---CCCc--eeEEEeCCCCCEEEEEeC----CCeEEEEEcC
Confidence 567777666543 23788887765332211000 0011 1112222444 6777763 3589999998
Q ss_pred CCc--eEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeE
Q 011957 373 DDT--WKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAV 417 (474)
Q Consensus 373 ~~~--W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 417 (474)
+.+ -..+... ....-..+...++++++.|+. ++.+.+
T Consensus 322 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~l~s~~~-d~~v~i 360 (420)
T 3vl1_A 322 SPECPVGEFLIN-------EGTPINNVYFAAGALFVSSGF-DTSIKL 360 (420)
T ss_dssp CTTSCSEEEEES-------TTSCEEEEEEETTEEEEEETT-TEEEEE
T ss_pred CCcCchhhhhcc-------CCCCceEEEeCCCCEEEEecC-CccEEE
Confidence 753 2333210 111123445567888888773 333333
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=88.98 E-value=14 Score=33.94 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=16.9
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCcee
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWS 210 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 210 (474)
..+|+.+.. ...+++||+.+++-.
T Consensus 55 ~~~~v~~~~-----~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 55 RTAYVLNNH-----YGDIYGIDLDTCKNT 78 (349)
T ss_dssp SEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred CEEEEEeCC-----CCcEEEEeCCCCcEE
Confidence 457877632 357999999887654
No 157
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=88.66 E-value=17 Score=36.47 Aligned_cols=147 Identities=10% Similarity=0.044 Sum_probs=71.8
Q ss_pred EEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcc---eeeEEEE--C-CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRA---YSKIGIL--N-NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 184 lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+++.|+.+ ..+.+||..+.+-... +..... ...++.+ + ++.++.|+.+ ..+.+||..+
T Consensus 175 ~l~~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~ 238 (615)
T 1pgu_A 175 RSMTVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD---------RKISCFDGKS 238 (615)
T ss_dssp EEEEEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT---------CCEEEEETTT
T ss_pred EEEEEeCC-----CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC---------CeEEEEECCC
Confidence 55565543 5678888766543221 111111 2222222 4 6677777643 5789999987
Q ss_pred CceEEcc-CCC-ccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCC
Q 011957 258 GLWSEIL-SMP-FSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGW 335 (474)
Q Consensus 258 ~~W~~~~-~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~ 335 (474)
.+-...- ... ...... .+++..++++++.++.++ ...+||..+++-...-.....
T Consensus 239 ~~~~~~~~~~~~~~~~~v--------------~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~-- 295 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGI--------------FALSWLDSQKFATVGADA-------TIRVWDVTTSKCVQKWTLDKQ-- 295 (615)
T ss_dssp CCEEEECCBTTBCCCSCE--------------EEEEESSSSEEEEEETTS-------EEEEEETTTTEEEEEEECCTT--
T ss_pred CCEeEEecccccccCCce--------------EEEEEcCCCEEEEEcCCC-------cEEEEECCCCcEEEEEcCCCC--
Confidence 7644322 100 111110 222222777777666543 237888887654332110100
Q ss_pred CccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 336 PVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 336 p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
+... ....++..++..++.|+. .+.+..||..+.
T Consensus 296 ~~~~-~~~~~~~~~~~~l~~~~~----~g~i~~~d~~~~ 329 (615)
T 1pgu_A 296 QLGN-QQVGVVATGNGRIISLSL----DGTLNFYELGHD 329 (615)
T ss_dssp CGGG-CEEEEEEEETTEEEEEET----TSCEEEEETTEE
T ss_pred cccC-ceeEEEeCCCCeEEEEEC----CCCEEEEECCCC
Confidence 1111 111133336666666653 357888888763
No 158
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.62 E-value=15 Score=38.69 Aligned_cols=107 Identities=8% Similarity=0.096 Sum_probs=62.5
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
.++.|||.. .+-+.+||+.+.++....... ...-.+....++.|+|... ..+.+||+.+++
T Consensus 72 ~~g~lWigT-------~~Gl~~yd~~~~~f~~~~~~~-~~~i~~i~~~~g~lWigt~-----------~Gl~~~~~~~~~ 132 (758)
T 3ott_A 72 DNTYLYMGT-------DNGILVYNYRADRYEQPETDF-PTDVRTMALQGDTLWLGAL-----------NGLYTYQLQSRK 132 (758)
T ss_dssp TTTEEEEEE-------TTEEEEEETTTTEECCCSCCC-CSCEEEEEEETTEEEEEET-----------TEEEEEETTTCC
T ss_pred CCCcEEEEe-------CCCeEEEeCCCCEEECcccCC-CceEEEEEecCCcEEEEcC-----------CcceeEeCCCCe
Confidence 467888753 245789999998876521111 1111223345788887422 357899999988
Q ss_pred eEEccCCCc--cccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcC
Q 011957 260 WSEILSMPF--SKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 260 W~~~~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~ 328 (474)
.+.+..... +... ..++... ++.|++... -|..+||+.+++++.+.
T Consensus 133 ~~~~~~~~~~l~~~~--------------i~~i~~d~~g~lWigt~---------~Gl~~~~~~~~~~~~~~ 181 (758)
T 3ott_A 133 LTSFDTRRNGLPNNT--------------IYSIIRTKDNQIYVGTY---------NGLCRYIPSNGKFEGIP 181 (758)
T ss_dssp EEEECHHHHCCSCSC--------------EEEEEECTTCCEEEEET---------TEEEEEETTTTEEEEEC
T ss_pred EEEeccCCCCcCCCe--------------EEEEEEcCCCCEEEEeC---------CCHhhCccCCCceEEec
Confidence 886621110 0011 0233332 688988321 34578999999887654
No 159
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=88.48 E-value=15 Score=33.91 Aligned_cols=195 Identities=11% Similarity=0.095 Sum_probs=100.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCC--ceeecCCC------CCCccee-eEEEE--CCEEEEEeceecCCCCCccCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLN--AWSEVSSM------SVGRAYS-KIGIL--NNKLYAVGGVTRGPGGLTPLQS 249 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~------p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 249 (474)
+|.||+.... ...+.+||+... .-..+... ....... .+++. ++.|||..++. ...
T Consensus 101 ~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~--------~~~ 167 (329)
T 3fvz_A 101 DGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC--------NSR 167 (329)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS--------CCE
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC--------CCe
Confidence 6779988643 357899998765 22222211 0111122 33443 68999997631 257
Q ss_pred EEEEeCCCCceEEccCCC-------ccccccccchhhccccccceeeEEEe-C-CEEEEeccCCCCcceeccceEEEcCC
Q 011957 250 AEVFDPRTGLWSEILSMP-------FSKAQVLPTAFLADLLKPIATGMSSY-R-GRLFVPQSLYFWPFFVDVGGEVYDPD 320 (474)
Q Consensus 250 ~~~yd~~t~~W~~~~~~p-------~~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~gG~~~~~~~~~~gg~~yd~~ 320 (474)
+.+||+....-..+.... ..... | .++++. + +.||+....+ -...+||+.
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~--p------------~gia~d~~~g~l~v~d~~~-------~~I~~~~~~ 226 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSV--P------------HSLALVPHLDQLCVADREN-------GRIQCFKTD 226 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESC--E------------EEEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCC--C------------cEEEEECCCCEEEEEECCC-------CEEEEEECC
Confidence 899996544333332110 00011 0 444443 4 8999965433 234789998
Q ss_pred CCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCC---CCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEE
Q 011957 321 VNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG---ALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLL 397 (474)
Q Consensus 321 t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~---~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~ 397 (474)
+++....-..... ... ...++...+.+|...|.. ......+..+|+.+.+....-...+ .......++
T Consensus 227 ~G~~~~~~~~~~~--~~~---~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----~~~~~p~~i 297 (329)
T 3fvz_A 227 TKEFVREIKHASF--GRN---VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----KHFDMPHDI 297 (329)
T ss_dssp TCCEEEEECCTTT--TTC---EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS----SCCSSEEEE
T ss_pred CCcEEEEEecccc--CCC---cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC----CccCCeeEE
Confidence 7776543210110 001 111334447777776642 1234589999988887655421100 111222444
Q ss_pred Ee-eCCEEEEEecCCCCceeEEE
Q 011957 398 AG-LLGKLHVITNDANHNIAVLQ 419 (474)
Q Consensus 398 ~~-~~~~l~v~GG~~~~~~~~~~ 419 (474)
+. -+|.|||.... ++.+.+..
T Consensus 298 a~~~dG~lyvad~~-~~~I~~~~ 319 (329)
T 3fvz_A 298 VASEDGTVYIGDAH-TNTVWKFT 319 (329)
T ss_dssp EECTTSEEEEEESS-SCCEEEEE
T ss_pred EECCCCCEEEEECC-CCEEEEEe
Confidence 43 35688887763 44444433
No 160
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.40 E-value=16 Score=34.15 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=75.3
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVL 274 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 274 (474)
..++++|..+.+++.+.. ..+........+ +++.+++...... .....++++|+.+++.+.+..++. .
T Consensus 216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~~~~l~~~~~---~-- 285 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKG----QTDRVIYKANPETLENEEVMVMPP---C-- 285 (396)
T ss_dssp CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETT----TCCEEEEEECTTTCCEEEEEECCS---E--
T ss_pred ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCC----CccceEEEEECCCCCeEEeeeCCC---C--
Confidence 579999998888777654 211212222222 4543333333211 112459999999888776654331 1
Q ss_pred cchhhccccccceeeEEEe-CCEEEEeccCCCC---------cceeccceEEEcCCCCceEEcCCCCCCCC------Ccc
Q 011957 275 PTAFLADLLKPIATGMSSY-RGRLFVPQSLYFW---------PFFVDVGGEVYDPDVNSWVEMPVGMGEGW------PVR 338 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~---------~~~~~~gg~~yd~~t~~W~~~~~~~~~~~------p~~ 338 (474)
.....- +|+++++.+.... ....+...+.+|+.+++...+..... .+ ...
T Consensus 286 -------------~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~ 351 (396)
T 3c5m_A 286 -------------SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST-SWDVLDGDRQI 351 (396)
T ss_dssp -------------EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC-CCCCBTTBSST
T ss_pred -------------CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC-ccccccccccC
Confidence 111223 6666665432100 00000223778888887666543111 00 000
Q ss_pred ccCcceEEEECCE-EEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 339 QAGTKLSITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 339 ~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
..... ...-+++ |++..... ....++.+|+.+..++.+.
T Consensus 352 ~~~~~-~~s~dg~~l~~~s~~~--~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 352 THPHP-SFTPNDDGVLFTSDFE--GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp TCCCC-EECTTSSEEEEEECTT--SSCEEEEEECCTTCC----
T ss_pred CCCCc-eEccCCCeEEEEecCC--CCceEEEEEEccccccccc
Confidence 01111 2333554 55444322 2357999999988887764
No 161
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.36 E-value=16 Score=33.98 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=83.0
Q ss_pred eeeccccccccccCCCCccceeEE-EeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEE
Q 011957 155 DLIRGWLGKKDALDRMGFCGCSIG-AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLY 232 (474)
Q Consensus 155 ~~~~~w~~~~~~~~p~pr~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~ly 232 (474)
|-=+.|....... ++|-....++ .-++.+|+.|.. ..+++-+=.-.+|+.+.... +...+.++.. ++.+|
T Consensus 106 DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~ 177 (327)
T 2xbg_A 106 DGGQSWSQIPLDP-KLPGSPRLIKALGNGSAEMITNV------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYV 177 (327)
T ss_dssp STTSSCEECCCCT-TCSSCEEEEEEEETTEEEEEETT------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEE
T ss_pred CCCCCceECcccc-CCCCCeEEEEEECCCCEEEEeCC------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEE
Confidence 3335676544321 1222223333 346788887641 23554433456799875432 2233344433 45666
Q ss_pred EEeceecCCCCCccCceEEEE-eCCCCceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCccee
Q 011957 233 AVGGVTRGPGGLTPLQSAEVF-DPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFV 310 (474)
Q Consensus 233 v~GG~~~~~~~~~~~~~~~~y-d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~ 310 (474)
++|-. ..++.- |..-.+|+.+.. +.+..- ..++ .-++.+|+.+.
T Consensus 178 ~~g~~----------G~~~~S~d~gG~tW~~~~~-~~~~~~---------------~~~~~~~~g~~~~~~~-------- 223 (327)
T 2xbg_A 178 AVSSR----------GSFYSTWEPGQTAWEPHNR-TTSRRL---------------HNMGFTPDGRLWMIVN-------- 223 (327)
T ss_dssp EEETT----------SSEEEEECTTCSSCEEEEC-CSSSCE---------------EEEEECTTSCEEEEET--------
T ss_pred EEECC----------CcEEEEeCCCCCceeECCC-CCCCcc---------------ceeEECCCCCEEEEeC--------
Confidence 65531 123333 333578998853 222221 3333 24678887653
Q ss_pred ccce-EEEcCC-CCceEEcCCC-CCCCCCccccCcceEEE-ECCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 311 DVGG-EVYDPD-VNSWVEMPVG-MGEGWPVRQAGTKLSIT-VEGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 311 ~~gg-~~yd~~-t~~W~~~~~~-~~~~~p~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.|. ...+.. ..+|+.+..+ +. .. .+...++. -++.+|++|+. ..+++-.-...+|+.+.
T Consensus 224 -~G~~~~s~~D~G~tW~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~g~~-----g~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 224 -GGKIAFSDPDNSENWGELLSPLRR----NS-VGFLDLAYRTPNEVWLAGGA-----GALLCSQDGGQTWQQDV 286 (327)
T ss_dssp -TTEEEEEETTEEEEECCCBCTTSS----CC-SCEEEEEESSSSCEEEEEST-----TCEEEESSTTSSCEECG
T ss_pred -CceEEEecCCCCCeeEeccCCccc----CC-cceEEEEecCCCEEEEEeCC-----CeEEEeCCCCcccEEcC
Confidence 111 222112 4579887642 11 11 11111222 26789998763 24544333457899875
No 162
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=88.27 E-value=9.3 Score=35.92 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=66.0
Q ss_pred ceEEEEeCCCCceeecCCC-CCCcc-eeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSM-SVGRA-YSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~-p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
..+.+||..+++-...... ..... ...++.+ +++.++.|+.+ ..+.+||..+++-.. .+......
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---------~~i~iwd~~~~~~~~--~~~~h~~~ 171 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---------ICIKVWDLAQQVVLS--SYRAHAAQ 171 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEEEE--EECCCSSC
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCcEEE--EEcCcCCc
Confidence 4688888887653221111 00111 1112222 56777777743 578899998765332 22111111
Q ss_pred cccchhhccccccceeeEEE-eCC-EEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCCCCCccccCcceEEE--
Q 011957 273 VLPTAFLADLLKPIATGMSS-YRG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGEGWPVRQAGTKLSIT-- 347 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~-~~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~~~p~~~~~~~~~~~-- 347 (474)
+ .+++. .++ .+++.|+.++ ...+||..+.+-.. +.. . .......+++.
T Consensus 172 V--------------~~~~~~~~~~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~-~-----~~~~~~~~~~~~p 224 (344)
T 4gqb_B 172 V--------------TCVAASPHKDSVFLSCSEDN-------RILLWDTRCPKPASQIGC-S-----APGYLPTSLAWHP 224 (344)
T ss_dssp E--------------EEEEECSSCTTEEEEEETTS-------CEEEEETTSSSCEEECC----------CCCEEEEEECS
T ss_pred e--------------EEEEecCCCCCceeeecccc-------ccccccccccceeeeeec-c-----eeeccceeeeecC
Confidence 0 22222 233 4667666553 23678888765433 221 1 01111111222
Q ss_pred ECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 348 VEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 348 ~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.++++++.|+. .+.|..||..+.+
T Consensus 225 ~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 225 QQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp SCTTEEEEEET----TSEEEEEESCC--
T ss_pred CCCcceEEecc----CCcEEEEECCCCc
Confidence 25667887764 3578899987653
No 163
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=88.27 E-value=12 Score=35.52 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=73.6
Q ss_pred EEEEcCcCCC-----cccceEEEEeCCCCcee-ecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 184 LYVLGGFSRA-----LAMRNVWRYDPVLNAWS-EVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 184 lyv~GG~~~~-----~~~~~v~~yd~~t~~W~-~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
+++.|...+. .....+.+||..+..-. .+........-.+++.. ++++++.|+.+ ..+.+||..
T Consensus 27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~v~vw~~~ 97 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN---------GSLELYSTN 97 (416)
T ss_dssp EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS---------SCEEEECCS
T ss_pred EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC---------CeEEEeecc
Confidence 6666643221 22356888998876432 22222221111222222 56666666643 468889987
Q ss_pred CC--ceEEccCCCccccccccchhhccccccceeeEEEe-C-CEEEEeccCCCCcceeccceEEEcCCCCc------eEE
Q 011957 257 TG--LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-R-GRLFVPQSLYFWPFFVDVGGEVYDPDVNS------WVE 326 (474)
Q Consensus 257 t~--~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~gG~~~~~~~~~~gg~~yd~~t~~------W~~ 326 (474)
+. ....+..+....... .+++.. + +++++.|+.++ ...+||..+.. -..
T Consensus 98 ~~~~~~~~~~~~~~h~~~v--------------~~~~~~~~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 98 EANNAINSMARFSNHSSSV--------------KTVKFNAKQDNVLASGGNNG-------EIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp STTSCCCEEEECCCSSSCC--------------CEEEECSSSTTBEEEECSSS-------CEEBCBTTTTSSCTTTCCCB
T ss_pred cccccccchhhccCCccce--------------EEEEEcCCCCCEEEEEcCCC-------eEEEEECCCCcccccccccc
Confidence 71 111222222111110 223332 2 56666666553 23677877664 111
Q ss_pred cCCCCCCCCCccccCcceEEEE-C-CEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 327 MPVGMGEGWPVRQAGTKLSITV-E-GELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
... .. .........++.. + +.+++.|+. .+.|..||.++.+-..
T Consensus 157 ~~~-~~---~~~~~~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 157 TPG-QS---MSSVDEVISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVI 202 (416)
T ss_dssp CCC-CS---CCSSCCCCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEE
T ss_pred ccc-cc---cCCCCCeeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcce
Confidence 110 00 0011111112332 2 567777764 3579999998876443
No 164
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=88.19 E-value=12 Score=39.02 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=79.8
Q ss_pred cceEEEEeCCC------C--ceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC---ceEEcc
Q 011957 196 MRNVWRYDPVL------N--AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG---LWSEIL 264 (474)
Q Consensus 196 ~~~v~~yd~~t------~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~---~W~~~~ 264 (474)
.++++++|..+ . .++.+..-..... .....-+++||+.+... .....+.++|..+. .|+.+-
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH------SPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT------CTTCEEEEEETTSCCGGGCEEEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC------CCCCEEEEEeCCCCCcccceecc
Confidence 57899999876 4 5777654322222 22334478888886532 12467899998875 588764
Q ss_pred CCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCc-eEEcCCCCCCCCCccccCc
Q 011957 265 SMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNS-WVEMPVGMGEGWPVRQAGT 342 (474)
Q Consensus 265 ~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~-W~~~~~~~~~~~p~~~~~~ 342 (474)
+-.....- ..++.. ++.+++....++. ...+++|+.+++ .+.+.. +....
T Consensus 331 ~~~~~~~~---------------~~~~~~~~~~lv~~~~~~g~-----~~l~~~~~~~g~~~~~l~~------~~~~v-- 382 (710)
T 2xdw_A 331 PEHEKDVL---------------EWVACVRSNFLVLCYLHDVK-----NTLQLHDLATGALLKIFPL------EVGSV-- 382 (710)
T ss_dssp CCCSSCEE---------------EEEEEETTTEEEEEEEETTE-----EEEEEEETTTCCEEEEECC------CSSEE--
T ss_pred CCCCCCeE---------------EEEEEEcCCEEEEEEEECCE-----EEEEEEECCCCCEEEecCC------CCceE--
Confidence 42211011 233444 6777775443321 113678886554 455543 11110
Q ss_pred ceEEEE--CC-EEEEEcCCCCCCCceEEEEECCCCc--eEEec
Q 011957 343 KLSITV--EG-ELYALDPSGALDSAKIKVYDYHDDT--WKVVV 380 (474)
Q Consensus 343 ~~~~~~--~~-~lyv~GG~~~~~~~~v~~yd~~~~~--W~~v~ 380 (474)
. .+.. ++ .|++. ..+......++.||+.+++ .+.+.
T Consensus 383 ~-~~~~s~d~~~l~~~-~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 383 V-GYSGQKKDTEIFYQ-FTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp E-EEECCTTCSEEEEE-EECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred E-EEecCCCCCEEEEE-EeCCCCCCEEEEEECCCCccceEEee
Confidence 0 1222 34 44443 2233345689999998877 77664
No 165
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=88.13 E-value=18 Score=34.30 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=73.4
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEE-----ccCCCccccccccchhhccccccceeeEEEe-CC-EEEEe
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSE-----ILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RG-RLFVP 300 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~-----~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~ 300 (474)
++.+++.|+.+ ..+.+||..++.... +..+...... ..+++.. ++ .+++.
T Consensus 93 ~~~~l~s~s~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~--------------v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 93 NDNVIASGSED---------CTVMVWEIPDGGLVLPLREPVITLEGHTKR--------------VGIVAWHPTAQNVLLS 149 (402)
T ss_dssp CTTEEEEEETT---------SEEEEEECCTTCCSSCBCSCSEEEECCSSC--------------EEEEEECSSBTTEEEE
T ss_pred CCCEEEEEeCC---------CeEEEEEccCCCCccccCCceEEecCCCCe--------------EEEEEECcCCCCEEEE
Confidence 56777777743 578999998875421 1111101111 0223332 33 46666
Q ss_pred ccCCCCcceeccceEEEcCCCCceEEcC--CCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 301 QSLYFWPFFVDVGGEVYDPDVNSWVEMP--VGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t~~W~~~~--~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
|+.++ ...+||..+++....- ... .... ......-++.+++.|+. .+.|.+||+.+.+-..
T Consensus 150 ~~~dg-------~i~iwd~~~~~~~~~~~~~~~----~~~v--~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 150 AGCDN-------VILVWDVGTGAAVLTLGPDVH----PDTI--YSVDWSRDGALICTSCR----DKRVRVIEPRKGTVVA 212 (402)
T ss_dssp EETTS-------CEEEEETTTTEEEEEECTTTC----CSCE--EEEEECTTSSCEEEEET----TSEEEEEETTTTEEEE
T ss_pred EcCCC-------EEEEEECCCCCccEEEecCCC----CCce--EEEEECCCCCEEEEEec----CCcEEEEeCCCCceee
Confidence 66553 2378898887654322 101 1111 11112226667777663 3589999998875433
Q ss_pred eccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEeec
Q 011957 379 VVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADVK 423 (474)
Q Consensus 379 v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~~ 423 (474)
.-. ... ...+.......-++++++.|......-.+..+|+.
T Consensus 213 ~~~-~~~---~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 213 EKD-RPH---EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp EEE-CSS---CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred eec-cCC---CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence 210 001 11112233344577877777322222334444543
No 166
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=88.12 E-value=19 Score=34.63 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=93.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCC----ceeec-C-CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLN----AWSEV-S-SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~----~W~~~-~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++.||+.--. ...++++++... ....+ . .+.. -.++++ .+++||+.-.. ...+++
T Consensus 123 ~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~---p~glavD~~~~~lY~~d~~---------~~~I~~ 185 (400)
T 3p5b_L 123 SNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQA---PDGLAVDWIHSNIYWTDSV---------LGTVSV 185 (400)
T ss_dssp TTEEEEEETT-----TTEEEEEEC------CCCEEEECSSCSC---EEEEEEETTTTEEEEEETT---------TTEEEE
T ss_pred cCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeCCCCC---cccEEEEecCCceEEEECC---------CCeEEE
Confidence 6889997432 356888888652 12222 2 2221 123344 37999998542 357899
Q ss_pred EeCCCCceEEcc--CCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC
Q 011957 253 FDPRTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP 328 (474)
Q Consensus 253 yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~ 328 (474)
+|+....-+.+. .+..| .++++ .++.||+.--... -..+++++....=+.+.
T Consensus 186 ~~~~g~~~~~l~~~~~~~P------------------~~iavdp~~g~ly~td~~~~------~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKP------------------RAIVVDPVHGFMYWTDWGTP------AKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp ECTTTCSEEEEEECSSCCE------------------EEEEEETTTTEEEEEECSSS------CCEEEEETTSCSCEEEE
T ss_pred EeCCCCceEEEEeCCCCCc------------------ceEEEecccCeEEEEeCCCC------CEEEEEeCCCCccEEEE
Confidence 999876655443 22222 23344 4789998541110 12367777654333332
Q ss_pred CCCCCCCCccccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEE
Q 011957 329 VGMGEGWPVRQAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHV 406 (474)
Q Consensus 329 ~~~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v 406 (474)
. ....+|. + +++ .+++||+... ....|+++|++...-+.+... + ..-....++++.++.||+
T Consensus 242 ~-~~l~~P~---g---lavd~~~~~lY~aD~----~~~~I~~~d~dG~~~~~~~~~-~----~~l~~P~gl~v~~~~lyw 305 (400)
T 3p5b_L 242 T-ENIQWPN---G---ITLDLLSGRLYWVDS----KLHSISSIDVNGGNRKTILED-E----KRLAHPFSLAVFEDKVFW 305 (400)
T ss_dssp C-SSCSCEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCCCEEEEEC-S----STTSSEEEEEEETTEEEE
T ss_pred E-CCCCceE---E---EEEEeCCCEEEEEEC----CCCEEEEEeCCCCccEEEEeC-C----CCCCCCEEEEEeCCEEEE
Confidence 1 0111121 1 333 3789999964 246899999986544443210 0 011224678889999999
Q ss_pred Eec
Q 011957 407 ITN 409 (474)
Q Consensus 407 ~GG 409 (474)
.--
T Consensus 306 td~ 308 (400)
T 3p5b_L 306 TDI 308 (400)
T ss_dssp EES
T ss_pred ecC
Confidence 873
No 167
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=87.94 E-value=6.4 Score=37.15 Aligned_cols=148 Identities=9% Similarity=0.012 Sum_probs=65.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCC-Ccc-eeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSV-GRA-YSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++ ++.+ ..+.+||..+++-........ ... ...++.+ +++.++.|+.+ ..+.+||..
T Consensus 105 d~~~l~-~s~d-----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---------g~v~iwd~~ 169 (357)
T 4g56_B 105 EKGILV-ASDS-----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---------FSVKVWDLS 169 (357)
T ss_dssp TTEEEE-EETT-----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETT
T ss_pred CCCEEE-EECC-----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---------CeEEEEECC
Confidence 556554 4432 357888887765332221110 111 1112222 56677777743 568899998
Q ss_pred CCceEEccCCCccccccccchhhccccccceeeEEEe-C-CEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCC
Q 011957 257 TGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-R-GRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEG 334 (474)
Q Consensus 257 t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~-~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~ 334 (474)
+.+-... +....... .+++.. + +.+++.++.++ ...+||..+.+-..... .
T Consensus 170 ~~~~~~~--~~~h~~~v--------------~~v~~s~~~~~~~~s~~~dg-------~v~~wd~~~~~~~~~~~-~--- 222 (357)
T 4g56_B 170 QKAVLKS--YNAHSSEV--------------NCVAACPGKDTIFLSCGEDG-------RILLWDTRKPKPATRID-F--- 222 (357)
T ss_dssp TTEEEEE--ECCCSSCE--------------EEEEECTTCSSCEEEEETTS-------CEEECCTTSSSCBCBCC-C---
T ss_pred CCcEEEE--EcCCCCCE--------------EEEEEccCCCceeeeeccCC-------ceEEEECCCCceeeeee-e---
Confidence 8754322 11111110 222322 3 34566665543 23677887765332211 1
Q ss_pred CCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 335 WPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 335 ~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
........+++.. ++.+++.|+. ...|..||..+.+
T Consensus 223 -~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd~~~~~ 260 (357)
T 4g56_B 223 -CASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVNIKNPD 260 (357)
T ss_dssp -TTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEESSCGG
T ss_pred -ccccccccchhhhhcccceEEEeec----ccceeEEECCCCc
Confidence 0011111112222 4567777763 3578899987654
No 168
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=87.69 E-value=26 Score=35.62 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=70.0
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeC-CCCc--eeecCCCCCC--------cceeeEEEECCEEEEEeceecCCCCCc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDP-VLNA--WSEVSSMSVG--------RAYSKIGILNNKLYAVGGVTRGPGGLT 245 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~ 245 (474)
-++.++.||+.... ...++.+|. .+.+ |+.-...... ....+.++.+++||+...
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------- 123 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------- 123 (571)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---------
Confidence 34579999998642 256899999 7765 8864332211 112245667999998743
Q ss_pred cCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 246 PLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 246 ~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
...+..+|.++++ |+.-..-+...... ..+.++.++++|+-.+..... .+-...+||+++++
T Consensus 124 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~-------------~~~P~v~~g~v~vg~~~~~~~--~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 124 -NGHLLALDAKTGKINWEVEVCDPKVGSTL-------------TQAPFVAKDTVLMGCSGAELG--VRGAVNAFDLKTGE 187 (571)
T ss_dssp -TSEEEEEETTTCCEEEEEECCCGGGTCBC-------------CSCCEEETTEEEEECBCGGGT--CCCEEEEEETTTCC
T ss_pred -CCEEEEEECCCCCEEEEecCCCCCcccee-------------ccCCEEECCEEEEEecCCccC--CCCEEEEEECCCCc
Confidence 1468999998874 87532211110110 023345789998854321100 00123789998775
Q ss_pred --eEEc
Q 011957 324 --WVEM 327 (474)
Q Consensus 324 --W~~~ 327 (474)
|+.-
T Consensus 188 ~~W~~~ 193 (571)
T 2ad6_A 188 LKWRAF 193 (571)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 8754
No 169
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.69 E-value=11 Score=39.64 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=72.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++.+.++|+.+ ..+.+||..+.+....-....... .+++.. +++.+++|+.+ ..+.+||..++.
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~ 88 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDD---------FRIRVFNYNTGE 88 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETT---------SEEEEEETTTCC
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEecCCCcE-EEEEEeCCCCEEEEEeCC---------CeEEEEECCCCc
Confidence 45555666532 468899988876433211111111 122222 55666666642 578999998877
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCC-ceEEcCCCCCCCCCc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVN-SWVEMPVGMGEGWPV 337 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-~W~~~~~~~~~~~p~ 337 (474)
....-.-. .... .+++. -+++..+.|+.++ ...+||..++ .....-...
T Consensus 89 ~~~~~~~~--~~~v--------------~~~~~s~~~~~l~~~~~dg-------~i~vw~~~~~~~~~~~~~~~------ 139 (814)
T 3mkq_A 89 KVVDFEAH--PDYI--------------RSIAVHPTKPYVLSGSDDL-------TVKLWNWENNWALEQTFEGH------ 139 (814)
T ss_dssp EEEEEECC--SSCE--------------EEEEECSSSSEEEEEETTS-------EEEEEEGGGTSEEEEEEECC------
T ss_pred EEEEEecC--CCCE--------------EEEEEeCCCCEEEEEcCCC-------EEEEEECCCCceEEEEEcCC------
Confidence 54321111 1110 22222 3555555555432 2367887765 222221101
Q ss_pred cccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 338 RQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 338 ~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
......++.. ++.+++.|+. .+.|..||..+.+
T Consensus 140 -~~~v~~~~~~p~~~~~l~~~~~----dg~v~vwd~~~~~ 174 (814)
T 3mkq_A 140 -EHFVMCVAFNPKDPSTFASGCL----DRTVKVWSLGQST 174 (814)
T ss_dssp -SSCEEEEEEETTEEEEEEEEET----TSEEEEEETTCSS
T ss_pred -CCcEEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 0111113333 4667777763 3578999987653
No 170
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=87.57 E-value=28 Score=35.88 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=97.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+.--. ...++++++.....+.+...... .-.++++ .+++||+.-.. ...++++|+...
T Consensus 48 ~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~---------~~~I~v~~~dG~ 112 (628)
T 4a0p_A 48 DNRIYWTDIS-----LKTISRAFMNGSALEHVVEFGLD-YPEGMAVDWLGKNLYWADTG---------TNRIEVSKLDGQ 112 (628)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETT---------TTEEEEEETTST
T ss_pred CCEEEEEECC-----CCeEEEEECCCCCcEEEEeCCCC-CcceEEEEeCCCEEEEEECC---------CCEEEEEecCCC
Confidence 6899998532 35788898877655554322111 1123444 47899997442 368999998755
Q ss_pred ceEEc--cCCCccccccccchhhccccccceeeEEEe--CCEEEEec-cCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 259 LWSEI--LSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQ-SLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 259 ~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~g-G~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
.=+.+ ..+..| .++++. +|.||+.- |.. -..++.++....-+.+...+.
T Consensus 113 ~~~~l~~~~l~~P------------------~~iavdp~~G~lY~tD~g~~-------~~I~r~~~dG~~~~~l~~~~~- 166 (628)
T 4a0p_A 113 HRQVLVWKDLDSP------------------RALALDPAEGFMYWTEWGGK-------PKIDRAAMDGSERTTLVPNVG- 166 (628)
T ss_dssp TCEEEECSSCCCE------------------EEEEEETTTTEEEEEECSSS-------CEEEEEETTSCSCEEEECSCS-
T ss_pred cEEEEEeCCCCCc------------------ccEEEccCCCeEEEeCCCCC-------CEEEEEeCCCCceEEEECCCC-
Confidence 43333 233333 333443 78999953 111 233677776655554433121
Q ss_pred CCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 334 GWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
+|. + +++- +++||+... ..+.|+++|++...=+.+...+ ...++++..+++||+.--
T Consensus 167 -~P~---G---lalD~~~~~LY~aD~----~~~~I~~~d~dG~~~~v~~~~l--------~~P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 167 -RAN---G---LTIDYAKRRLYWTDL----DTNLIESSNMLGLNREVIADDL--------PHPFGLTQYQDYIYWTDW 225 (628)
T ss_dssp -SEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEECC--------SCEEEEEEETTEEEEEET
T ss_pred -Ccc---e---EEEccccCEEEEEEC----CCCEEEEEcCCCCceEEeeccC--------CCceEEEEECCEEEEecC
Confidence 121 1 2332 689999965 2468999998764333333222 224688888999999763
No 171
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=87.44 E-value=17 Score=33.36 Aligned_cols=195 Identities=13% Similarity=0.084 Sum_probs=96.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC---cceeeEEEE--CCEEEEEeceecCCCC--------CccC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG---RAYSKIGIL--NNKLYAVGGVTRGPGG--------LTPL 247 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~--------~~~~ 247 (474)
++.|||.... ..+.+||+.++..+.+...... ..-..+++- ++.|||.-........ ....
T Consensus 91 ~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 91 NNQLYIVDCY------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TTEEEEEETT------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CCcEEEEECC------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 6899997421 3488899887765554322111 111223332 5789986432100000 0113
Q ss_pred ceEEEEeCCCCceEEccC-CCccccccccchhhccccccceeeEEEe-CC-EEEEeccCCCCcceeccceEEEcCCCC--
Q 011957 248 QSAEVFDPRTGLWSEILS-MPFSKAQVLPTAFLADLLKPIATGMSSY-RG-RLFVPQSLYFWPFFVDVGGEVYDPDVN-- 322 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~-- 322 (474)
..+++||+.+.+.+.+.. +..| .+++.. ++ .||+..... -...+||+...
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~~p------------------~gia~~~dg~~lyv~d~~~-------~~I~~~~~~~~~~ 219 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELHVP------------------GGAEVSADSSFVLVAEFLS-------HQIVKYWLEGPKK 219 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEESCC------------------CEEEECTTSSEEEEEEGGG-------TEEEEEESSSTTT
T ss_pred ceEEEEeCCCCEEEEeccCCccC------------------cceEECCCCCEEEEEeCCC-------CeEEEEECCCCcC
Confidence 568999998887654421 1111 333433 34 588853211 23478887752
Q ss_pred -ceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCC------CCCceEEEEECCCCceEEeccCCCCCCCCCCCCCe
Q 011957 323 -SWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGA------LDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPY 395 (474)
Q Consensus 323 -~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~------~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~ 395 (474)
+.+.+.. . +.+ .+ .++--+|.|||...... .....|.+||++...-..+. .|.+. ......
T Consensus 220 ~~~~~~~~-~----~gP-~g--i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~--~~~g~--~~~~~~ 287 (322)
T 2fp8_A 220 GTAEVLVK-I----PNP-GN--IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP--LPPPF--AGEHFE 287 (322)
T ss_dssp TCEEEEEE-C----SSE-EE--EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE--CCTTT--TTSCCC
T ss_pred CccceEEe-C----CCC-CC--eEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE--CCCCC--ccccce
Confidence 3443322 1 111 11 13344678998853200 01247999999765544443 22211 012223
Q ss_pred EEEeeCCEEEEEecCCCCceeEEE
Q 011957 396 LLAGLLGKLHVITNDANHNIAVLQ 419 (474)
Q Consensus 396 ~~~~~~~~l~v~GG~~~~~~~~~~ 419 (474)
.++..+++|||... .++.+.+..
T Consensus 288 ~~~~~~g~L~v~~~-~~~~i~~~~ 310 (322)
T 2fp8_A 288 QIQEHDGLLYIGTL-FHGSVGILV 310 (322)
T ss_dssp EEEEETTEEEEECS-SCSEEEEEE
T ss_pred EEEEeCCEEEEeec-CCCceEEEe
Confidence 45556889998654 444444433
No 172
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=87.34 E-value=9.4 Score=39.98 Aligned_cols=128 Identities=16% Similarity=0.242 Sum_probs=71.5
Q ss_pred eEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEe
Q 011957 223 KIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVP 300 (474)
Q Consensus 223 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 300 (474)
+-++.+++||+.... ..+..+|.++++ |+.-...+...... . ..+ ....+.++.+++||+.
T Consensus 65 ~P~v~~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~---~-~~~---~~~~~~~~~~g~v~v~ 127 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF----------SVVYALDARDGRLIWKYDPQSDRHRAGE---A-CCD---AVNRGVAVWKGKVYVG 127 (689)
T ss_dssp CCEEETTEEEEECGG----------GCEEEEETTTCCEEEEECCCCCGGGGGG---C-TTC---SCCCCCEEETTEEEEE
T ss_pred cCEEECCEEEEEcCC----------CeEEEEECCCCceeEEEcCCCCcccccc---c-ccc---CCCCccEEECCEEEEE
Confidence 345679999997652 468899988765 88654332111000 0 000 0003446678999985
Q ss_pred ccCCCCcceeccceEEEcCCCCc--eEEcCC-CCCCCCCccccCcceEEEECCEEEEEcCCC-CCCCceEEEEECCCCc-
Q 011957 301 QSLYFWPFFVDVGGEVYDPDVNS--WVEMPV-GMGEGWPVRQAGTKLSITVEGELYALDPSG-ALDSAKIKVYDYHDDT- 375 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~-~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~-~~~~~~v~~yd~~~~~- 375 (474)
.. + -...++|.+|++ |+.-.. .... ..... ++.++.++.+|+-.+.. ......++.||.++.+
T Consensus 128 ~~-d-------g~l~AlDa~TG~~~W~~~~~~~~~~--~~~~~--~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 128 VL-D-------GRLEAIDAKTGQRAWSVDTRADHKR--SYTIT--GAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp CT-T-------SEEEEEETTTCCEEEEEECCSCTTS--CCBCC--SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred cc-C-------CEEEEEECCCCCEeeeecCcCCCCC--Ccccc--CCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 42 1 123789998875 886442 1110 01111 11456789888743211 1124589999999875
Q ss_pred -eEEe
Q 011957 376 -WKVV 379 (474)
Q Consensus 376 -W~~v 379 (474)
|+.-
T Consensus 196 ~W~~~ 200 (689)
T 1yiq_A 196 AWRFY 200 (689)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 8763
No 173
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.21 E-value=21 Score=34.13 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=28.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEece
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGV 237 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 237 (474)
+|.+++.|+.+ ..+.+||..+.+-...-.-.. ....+...++.+.+.|+.
T Consensus 158 dg~~lasgs~D-----g~v~iWd~~~~~~~~~~~~h~--~~v~~~s~~~~~l~sgs~ 207 (420)
T 4gga_A 158 EGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSR 207 (420)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS--SCEEEEEEETTEEEEEET
T ss_pred CCCEEEEEECC-----CeEEEEEcCCCcEEEEEeCCC--CceEEEeeCCCEEEEEeC
Confidence 56677777654 468889988875332211111 222334456666666664
No 174
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=87.21 E-value=16 Score=32.56 Aligned_cols=172 Identities=12% Similarity=0.039 Sum_probs=91.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+.... .+.+.+||+.+..-..+.+... ..-+.+++. +++||+.-.. ...+.++|+...
T Consensus 47 ~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~---------~~~I~~~~~~g~ 111 (267)
T 1npe_A 47 DKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ---------LDRIEVAKMDGT 111 (267)
T ss_dssp TTEEEEEETT-----TTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSC
T ss_pred CCEEEEEECC-----CCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC---------CCEEEEEEcCCC
Confidence 6789998532 3679999998765333321111 122334443 5899998642 257889998754
Q ss_pred ceEEccC--CCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCC
Q 011957 259 LWSEILS--MPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEG 334 (474)
Q Consensus 259 ~W~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~ 334 (474)
.-+.+.. +..| .++++. +++||+....... -..+++++....-+.+.. ....
T Consensus 112 ~~~~~~~~~~~~P------------------~~i~vd~~~g~lyv~~~~~~~-----~~I~~~~~dg~~~~~~~~-~~~~ 167 (267)
T 1npe_A 112 QRRVLFDTGLVNP------------------RGIVTDPVRGNLYWTDWNRDN-----PKIETSHMDGTNRRILAQ-DNLG 167 (267)
T ss_dssp SCEEEECSSCSSE------------------EEEEEETTTTEEEEEECCSSS-----CEEEEEETTSCCCEEEEC-TTCS
T ss_pred CEEEEEECCCCCc------------------cEEEEeeCCCEEEEEECCCCC-----cEEEEEecCCCCcEEEEE-CCCC
Confidence 4333321 1111 333443 6899996532100 122567765443333321 1100
Q ss_pred CCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 335 WPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 335 ~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
.| .+ +++- +++||+... ..+.|.+||++...-..+.. . .....+++..++.||+.-.
T Consensus 168 ~P---~g---ia~d~~~~~lyv~d~----~~~~I~~~~~~g~~~~~~~~---~-----~~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 168 LP---NG---LTFDAFSSQLCWVDA----GTHRAECLNPAQPGRRKVLE---G-----LQYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp CE---EE---EEEETTTTEEEEEET----TTTEEEEEETTEEEEEEEEE---C-----CCSEEEEEEETTEEEEEET
T ss_pred CC---cE---EEEcCCCCEEEEEEC----CCCEEEEEecCCCceEEEec---C-----CCCceEEEEeCCEEEEEEC
Confidence 11 11 3332 578999864 24689999998643222211 1 1123566777889999765
No 175
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=87.04 E-value=14 Score=32.00 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCC------CCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVP------LPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p------~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
++++|++-| +..|+||..+++ +...-| .+.++. .. -++...++++|+|-|
T Consensus 127 ~gk~yfFkG------~~ywr~d~~~~~---~d~gyPr~i~~~~~Gip~-~i-DaAf~~~g~~YfFkg 182 (207)
T 1pex_A 127 TGKTLLFSG------NQVWRYDDTNHI---MDKDYPRLIEEDFPGIGD-KV-DAVYEKNGYIYFFNG 182 (207)
T ss_dssp TSEEEEEET------TEEEEEETTTTE---ECSSCCCBHHHHSTTSCS-CC-SEEEEETTEEEEEET
T ss_pred CCEEEEEeC------CEEEEEeCcCcc---ccCCCCccHHHcCCCCCC-Cc-cEEEEcCCcEEEEEC
Confidence 489999976 578999987653 221111 011221 22 344457999999988
No 176
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=87.02 E-value=21 Score=33.87 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFW 306 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~ 306 (474)
+++.++.|+.+ ..+.+||..+.+-...-. ...... .+++. -+++..+.|+.++
T Consensus 134 dg~~l~s~~~d---------~~i~iwd~~~~~~~~~~~--~h~~~v--------------~~~~~~p~~~~l~s~s~d~- 187 (393)
T 1erj_A 134 DGKFLATGAED---------RLIRIWDIENRKIVMILQ--GHEQDI--------------YSLDYFPSGDKLVSGSGDR- 187 (393)
T ss_dssp TSSEEEEEETT---------SCEEEEETTTTEEEEEEC--CCSSCE--------------EEEEECTTSSEEEEEETTS-
T ss_pred CCCEEEEEcCC---------CeEEEEECCCCcEEEEEc--cCCCCE--------------EEEEEcCCCCEEEEecCCC-
Confidence 56777777643 578899998775432211 111110 22222 2555556565443
Q ss_pred cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceE
Q 011957 307 PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWK 377 (474)
Q Consensus 307 ~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 377 (474)
....||..+++-...-. ... ....++.. ++++++.|+.+ +.|..||..+.+-.
T Consensus 188 ------~v~iwd~~~~~~~~~~~-~~~-------~v~~~~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 188 ------TVRIWDLRTGQCSLTLS-IED-------GVTTVAVSPGDGKYIAAGSLD----RAVRVWDSETGFLV 242 (393)
T ss_dssp ------EEEEEETTTTEEEEEEE-CSS-------CEEEEEECSTTCCEEEEEETT----SCEEEEETTTCCEE
T ss_pred ------cEEEEECCCCeeEEEEE-cCC-------CcEEEEEECCCCCEEEEEcCC----CcEEEEECCCCcEE
Confidence 23678888776543221 110 11112222 67788887743 57899999887543
No 177
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=86.92 E-value=20 Score=33.59 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=31.9
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CC-EEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NN-KLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+.+++.|+.+ ..+.+||..+.+-... +........+..+ ++ .+++.|+.+ ..+.+||..+.
T Consensus 156 ~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ll~~~~~d---------g~i~i~d~~~~ 219 (408)
T 4a11_B 156 HCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHRQEILAVSWSPRYDYILATASAD---------SRVKLWDVRRA 219 (408)
T ss_dssp CCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTCS
T ss_pred CcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCCCcEEEEEECCCCCcEEEEEcCC---------CcEEEEECCCC
Confidence 3466666543 4688899877642221 1111111222222 23 367777643 46888998765
No 178
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=86.90 E-value=18 Score=33.03 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=79.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+++|||...... ...+++||+.+.+.+.+...+..+.....+.. ++.+|+.-. ....++++|+.+..
T Consensus 82 dG~l~vad~~~~---~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 82 NGDLVATGWNAD---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQPS 149 (306)
T ss_dssp TSCEEEEEECTT---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTTE
T ss_pred CCcEEEEeccCC---cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCCc
Confidence 677888753211 13588899988888776555544443333322 556777532 12578999987642
Q ss_pred ---eEEccCCC--ccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCC-Cce---EEcCCC
Q 011957 260 ---WSEILSMP--FSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDV-NSW---VEMPVG 330 (474)
Q Consensus 260 ---W~~~~~~p--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t-~~W---~~~~~~ 330 (474)
|..-+.+. .+... + ....++..-++.||+.--.. -...+||+.. ++. +.+..
T Consensus 150 ~~v~~~~~~~~~~~~~~~-~----------~~pngis~dg~~lyv~d~~~-------~~I~~~~~~~~g~~~~~~~~~~- 210 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESV-F----------PAANGLKRFGNFLYVSNTEK-------MLLLRIPVDSTDKPGEPEIFVE- 210 (306)
T ss_dssp EEEEEECGGGSCSSTTCC-S----------CSEEEEEEETTEEEEEETTT-------TEEEEEEBCTTSCBCCCEEEEE-
T ss_pred EeEEEECCccccccccCC-C----------CcCCCcCcCCCEEEEEeCCC-------CEEEEEEeCCCCCCCccEEEec-
Confidence 22111110 00000 0 00034433456788854222 2237788764 221 11111
Q ss_pred CCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 331 MGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.. .| ...++.-+|.||+... ..+.|.+||++ .+-..+
T Consensus 211 ~~--~P-----~gi~vd~dG~l~va~~----~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 211 QT--NI-----DDFAFDVEGNLYGATH----IYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp SC--CC-----SSEEEBTTCCEEEECB----TTCCEEEECTT-CCEEEE
T ss_pred cC--CC-----CCeEECCCCCEEEEeC----CCCeEEEECCC-CCEEEE
Confidence 00 01 1113445788999853 23579999987 444433
No 179
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=86.87 E-value=9.6 Score=39.75 Aligned_cols=128 Identities=13% Similarity=0.171 Sum_probs=71.5
Q ss_pred eEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEe
Q 011957 223 KIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVP 300 (474)
Q Consensus 223 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 300 (474)
+-++.+++||+.... ..+..+|.++++ |+.-...+....... ..+ ....+.++.+++||+.
T Consensus 61 ~P~v~~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~v~v~ 123 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW----------SRVIAVDAASGKELWRYDPEVAKVKARTS----CCD---AVNRGVALWGDKVYVG 123 (668)
T ss_dssp CCEEETTEEEEEEGG----------GEEEEEETTTCCEEEEECCCCCGGGGGGC----TTC---SCCCCCEEEBTEEEEE
T ss_pred CCEEECCEEEEECCC----------CeEEEEECCCChhceEECCCCCccccccc----ccc---CCccceEEECCEEEEE
Confidence 345779999998652 468899988765 886543322110000 000 0003346678999985
Q ss_pred ccCCCCcceeccceEEEcCCCCc--eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCC-CCCCceEEEEECCCCc--
Q 011957 301 QSLYFWPFFVDVGGEVYDPDVNS--WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSG-ALDSAKIKVYDYHDDT-- 375 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~-~~~~~~v~~yd~~~~~-- 375 (474)
.. + -...++|.++++ |+.-..... ..... .+..++.++.+|+..+.. ......|+.||+++.+
T Consensus 124 ~~-d-------g~l~alD~~tG~~~W~~~~~~~~---~~~~~-~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 124 TL-D-------GRLIALDAKTGKAIWSQQTTDPA---KPYSI-TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp CT-T-------SEEEEEETTTCCEEEEEECSCTT---SSCBC-CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred cC-C-------CEEEEEECCCCCEeeeeccCCCC---Cccee-cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 32 1 123789988875 887432111 01111 111456788888753221 1123589999998764
Q ss_pred eEEe
Q 011957 376 WKVV 379 (474)
Q Consensus 376 W~~v 379 (474)
|+.-
T Consensus 192 W~~~ 195 (668)
T 1kv9_A 192 WRFY 195 (668)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8763
No 180
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=86.78 E-value=30 Score=35.42 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=44.1
Q ss_pred eCCE----EEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCC--cceeeEEEECCEEEEEeceecCCCCCccCceEE
Q 011957 180 VDGC----LYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVG--RAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 180 ~~~~----lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
.+++ ||+... ...++.+|..|.+ |+.-..-+.. ....+.++.+++|||-.+... ......+.
T Consensus 116 ~~g~~~~rV~v~t~------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e----~g~~g~v~ 185 (599)
T 1w6s_A 116 GDGKTPALILKTQL------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAE----LGVRGYLT 185 (599)
T ss_dssp CCSSSCCEEEEECT------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGG----GTCCCEEE
T ss_pred cCCcceeEEEEEcC------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccc----cCCCCeEE
Confidence 4666 887532 2578899998876 8753211111 112233567899887543211 01235799
Q ss_pred EEeCCCCc--eEEcc
Q 011957 252 VFDPRTGL--WSEIL 264 (474)
Q Consensus 252 ~yd~~t~~--W~~~~ 264 (474)
.||.++++ |+.-.
T Consensus 186 A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 186 AYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEETTTCCEEEEEES
T ss_pred EEECCCCcEEEEEcC
Confidence 99999875 87543
No 181
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.75 E-value=21 Score=33.50 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=38.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc----eeecCCCCCCcc-eeeEEEE-C----C---EEEEEeceecCCCCCccC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA----WSEVSSMSVGRA-YSKIGIL-N----N---KLYAVGGVTRGPGGLTPL 247 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~----W~~~~~~p~~r~-~~~~~~~-~----~---~lyv~GG~~~~~~~~~~~ 247 (474)
...+++.|+.+ ..+.+||..+.+ +..+..+..... -.+++.. + + ++++.|+.+
T Consensus 25 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d--------- 90 (397)
T 1sq9_A 25 CNSFTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS--------- 90 (397)
T ss_dssp CSSEEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT---------
T ss_pred cCCeEEEEcCC-----CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC---------
Confidence 33566666543 468888888766 222211111111 1122222 3 6 777777743
Q ss_pred ceEEEEeCCCCc------eEEccCC
Q 011957 248 QSAEVFDPRTGL------WSEILSM 266 (474)
Q Consensus 248 ~~~~~yd~~t~~------W~~~~~~ 266 (474)
..+.+||..+.. +..+...
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~ 115 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLL 115 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCS
T ss_pred CCEEEEEccCCcccccccceeeccc
Confidence 568888887776 6665443
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=86.74 E-value=8.9 Score=40.40 Aligned_cols=150 Identities=13% Similarity=0.013 Sum_probs=79.5
Q ss_pred cceEEEEeCCCC--c-eeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCC--CceEEccCCCccc
Q 011957 196 MRNVWRYDPVLN--A-WSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT--GLWSEILSMPFSK 270 (474)
Q Consensus 196 ~~~v~~yd~~t~--~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~r 270 (474)
.++++++|..+. . |+.+..-....... ....++.||+..... .....+.++|..+ ..|+.+-+-....
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 365 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG------APLKKIVRVDLSGSTPRFDTVVPESKDN 365 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT------CTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC------CCCCEEEEEeCCCCccccEEEecCCCCe
Confidence 578999999877 6 88775433322222 234577888775421 1246789999887 5798775322111
Q ss_pred cccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECC
Q 011957 271 AQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEG 350 (474)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~ 350 (474)
. ..+...++.+++....++. ...+.+|+..+.-+.+.. |....-......-++
T Consensus 366 l----------------~~~~~~~~~lv~~~~~dg~-----~~l~~~~~~g~~~~~l~~------~~~~~v~~~~~s~d~ 418 (741)
T 1yr2_A 366 L----------------ESVGIAGNRLFASYIHDAK-----SQVLAFDLDGKPAGAVSL------PGIGSASGLSGRPGD 418 (741)
T ss_dssp E----------------EEEEEEBTEEEEEEEETTE-----EEEEEEETTSCEEEECBC------SSSCEEEEEECCBTC
T ss_pred E----------------EEEEEECCEEEEEEEECCE-----EEEEEEeCCCCceeeccC------CCCeEEEEeecCCCC
Confidence 0 2334447788775443322 112567765444444432 111000000111233
Q ss_pred -EEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 351 -ELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 351 -~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
.|++.. .+......++.||..+++.+.+.
T Consensus 419 ~~l~~~~-ss~~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 419 RHAYLSF-SSFTQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp SCEEEEE-EETTEEEEEEEEETTTTEEEECS
T ss_pred CEEEEEE-cCCCCCCEEEEEECCCCcEEEEe
Confidence 344432 22223468999999998877664
No 183
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.42 E-value=20 Score=33.10 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=89.0
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc-eeecCCCCCCcceeeEEE---ECCEEEEEeceecCCCCCccCceEEE
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA-WSEVSSMSVGRAYSKIGI---LNNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
.+..++.|.+.-. ...+.+||..+.+ -.... ......-.+++. .++++++.|+.+ ..+.+
T Consensus 90 s~s~D~~i~~w~~------~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~~ 153 (343)
T 3lrv_A 90 SRGPCNRLLLLYP------GNQITILDSKTNKVLREIE-VDSANEIIYMYGHNEVNTEYFIWADNR---------GTIGF 153 (343)
T ss_dssp EECSTTEEEEEET------TTEEEEEETTTCCEEEEEE-CCCSSCEEEEECCC---CCEEEEEETT---------CCEEE
T ss_pred EecCCCeEEEEEc------cCceEEeecCCcceeEEee-cCCCCCEEEEEcCCCCCCCEEEEEeCC---------CcEEE
Confidence 3344566666532 2456777877766 22221 111110111111 145667777743 57889
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceE--EcCC
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWV--EMPV 329 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~--~~~~ 329 (474)
||..+++-..+........- .+++ .-++.+++.|+.++ ...+||..+++-. .+..
T Consensus 154 wd~~~~~~~~~~~~~~~~~i---------------~~~~~~pdg~~lasg~~dg-------~i~iwd~~~~~~~~~~~~~ 211 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEY---------------SSGVLHKDSLLLALYSPDG-------ILDVYNLSSPDQASSRFPV 211 (343)
T ss_dssp EESSSSCEEEEECCCSSCCC---------------CEEEECTTSCEEEEECTTS-------CEEEEESSCTTSCCEECCC
T ss_pred EECCCCcEEEEEecCCCCce---------------EEEEECCCCCEEEEEcCCC-------EEEEEECCCCCCCccEEec
Confidence 99988775433221111111 2333 23677777777553 2378898877533 2221
Q ss_pred CCCCCCCccccCcceEE-EECCEEEEEcCCCCCCCceEEEEECCCCceEE-eccCCCCCCCCCCCCCeEEEeeCCEEEEE
Q 011957 330 GMGEGWPVRQAGTKLSI-TVEGELYALDPSGALDSAKIKVYDYHDDTWKV-VVGDVPLPNFTDSESPYLLAGLLGKLHVI 407 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~-v~~~~p~~~~~~~r~~~~~~~~~~~l~v~ 407 (474)
. .......++ .-++..++.|+. +.|..||+.+.+=.. +. ....+..+... .......+++.++.
T Consensus 212 --~-----h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 212 --D-----EEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRKDVGTLAYP-TYTIPEFKTGT-VTYDIDDSGKNMIA 277 (343)
T ss_dssp --C-----TTSCEEEEEECTTSSEEEEEES-----SBEEEEETTSSTTCBSSC-CCBC-----CC-EEEEECTTSSEEEE
T ss_pred --c-----CCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCCCCcceeec-ccccccccccc-eEEEECCCCCEEEE
Confidence 0 011111122 235666666652 279999988753211 11 00000011111 01222346777777
Q ss_pred ecCCCCceeEEEE
Q 011957 408 TNDANHNIAVLQA 420 (474)
Q Consensus 408 GG~~~~~~~~~~~ 420 (474)
|+..++.+.+..+
T Consensus 278 ~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 278 YSNESNSLTIYKF 290 (343)
T ss_dssp EETTTTEEEEEEE
T ss_pred ecCCCCcEEEEEE
Confidence 6654555555444
No 184
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=86.41 E-value=19 Score=32.71 Aligned_cols=65 Identities=14% Similarity=-0.001 Sum_probs=35.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++.+.+.|+.+ ..+.+||..+.+-...-.............-++++++.|+.+ ..+.+||..+++
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---------~~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD---------FRIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT---------SEEEEEETTTCC
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC---------CEEEEEECCCCc
Confidence 56666666653 467888988765322111111111111122255666666643 578899998765
No 185
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.39 E-value=12 Score=34.37 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc----eeecCCCCCCcceeeEEEE-CCE-EEEEeceecCCCCCccCceEEEEe
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA----WSEVSSMSVGRAYSKIGIL-NNK-LYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~----W~~~~~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
++.+++.|+.+ ..+.+||..+.. -..+.. ....-.+++.. +++ +++.|+.+ ..+.+||
T Consensus 22 ~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~~wd 85 (342)
T 1yfq_A 22 SKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTVQ---------GEILKVD 85 (342)
T ss_dssp GGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEETT---------SCEEEEC
T ss_pred CCCEEEEEcCC-----CeEEEEEeCCCCccccceeeee--cCCceEEEEECCCCCcEEEEEcCC---------CeEEEEE
Confidence 44555555533 467788877665 222221 11111222222 566 66666642 5789999
Q ss_pred C-CCCceEEccC
Q 011957 255 P-RTGLWSEILS 265 (474)
Q Consensus 255 ~-~t~~W~~~~~ 265 (474)
. .++.-..+..
T Consensus 86 ~~~~~~~~~~~~ 97 (342)
T 1yfq_A 86 LIGSPSFQALTN 97 (342)
T ss_dssp SSSSSSEEECBS
T ss_pred eccCCceEeccc
Confidence 9 8887665543
No 186
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=86.37 E-value=13 Score=34.88 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=72.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCC----------CCC-CcceeeEEEE---CCEEEEEeceecCCCCCcc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSS----------MSV-GRAYSKIGIL---NNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~----------~p~-~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~ 246 (474)
++.+++.|+.+ ..+.+||..+.+...... .+. .........+ ++.+++.|+.+
T Consensus 55 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------- 121 (408)
T 4a11_B 55 EGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-------- 121 (408)
T ss_dssp TCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT--------
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC--------
Confidence 56677777653 458888888765432211 000 1111222222 45566776643
Q ss_pred CceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 247 LQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
..+.+||..+..-...-..+.+... ..... .++.+.+.|+.++ ...+||..+.+-
T Consensus 122 -~~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-------~v~~~d~~~~~~ 178 (408)
T 4a11_B 122 -KTLKVWDTNTLQTADVFNFEETVYS---------------HHMSPVSTKHCLVAVGTRGP-------KVQLCDLKSGSC 178 (408)
T ss_dssp -SEEEEEETTTTEEEEEEECSSCEEE---------------EEECSSCSSCCEEEEEESSS-------SEEEEESSSSCC
T ss_pred -CeEEEeeCCCCccceeccCCCceee---------------eEeecCCCCCcEEEEEcCCC-------eEEEEeCCCcce
Confidence 5789999988765544333222111 11111 1344666665443 236788876543
Q ss_pred EEcCCCCCCCCCccccCcceEEEE-CCE-EEEEcCCCCCCCceEEEEECCCC
Q 011957 325 VEMPVGMGEGWPVRQAGTKLSITV-EGE-LYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
...-... .....+++.. ++. +++.|+. .+.+..||..+.
T Consensus 179 ~~~~~~~-------~~~v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~ 219 (408)
T 4a11_B 179 SHILQGH-------RQEILAVSWSPRYDYILATASA----DSRVKLWDVRRA 219 (408)
T ss_dssp CEEECCC-------CSCEEEEEECSSCTTEEEEEET----TSCEEEEETTCS
T ss_pred eeeecCC-------CCcEEEEEECCCCCcEEEEEcC----CCcEEEEECCCC
Confidence 2211101 1111112222 333 6777763 357889998765
No 187
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=86.36 E-value=7.2 Score=35.64 Aligned_cols=108 Identities=10% Similarity=-0.034 Sum_probs=60.1
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFW 306 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~ 306 (474)
++.||++... ...+++||+.++.-.... .+... .+++. -+|++|+..+
T Consensus 24 ~~~l~~~d~~---------~~~i~~~d~~~~~~~~~~-~~~~~-----------------~~i~~~~dG~l~v~~~---- 72 (297)
T 3g4e_A 24 SNSLLFVDIP---------AKKVCRWDSFTKQVQRVT-MDAPV-----------------SSVALRQSGGYVATIG---- 72 (297)
T ss_dssp TTEEEEEETT---------TTEEEEEETTTCCEEEEE-CSSCE-----------------EEEEEBTTSSEEEEET----
T ss_pred CCEEEEEECC---------CCEEEEEECCCCcEEEEe-CCCce-----------------EEEEECCCCCEEEEEC----
Confidence 4688887653 267899999987665432 12111 22232 3677777432
Q ss_pred cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCC-C------CCCCceEEEEECCC
Q 011957 307 PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPS-G------ALDSAKIKVYDYHD 373 (474)
Q Consensus 307 ~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~-~------~~~~~~v~~yd~~~ 373 (474)
.+..+||+++++++.+... ....+..+.. ..++.-+|+||+..-. . ......++.+|+..
T Consensus 73 -----~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 73 -----TKFCALNWKEQSAVVLATV-DNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp -----TEEEEEETTTTEEEEEEEC-CTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred -----CeEEEEECCCCcEEEEEec-CCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 3558999999998876541 1111211111 1133446888875311 1 01245789998864
No 188
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=86.34 E-value=6.8 Score=37.47 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++..++.|+.+ ..+.+||..+.+-...-.-.. ..-.+++.. +++.++.|+.+ ..+.+||..+++
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d---------~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD---------RTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEccCC-CCEEEEEEcCCCCEEEEecCC---------CcEEEEECCCCe
Confidence 56677777654 468889988775432211111 111122222 45555666542 578899998876
Q ss_pred eEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCCCCC
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGEGWP 336 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~~~p 336 (474)
-...-...... ..++.. ++++++.|+.++ ...+||..++.-.. +...... ..
T Consensus 199 ~~~~~~~~~~v-----------------~~~~~~~~~~~~l~~~s~d~-------~v~iwd~~~~~~~~~~~~~~~~-~~ 253 (393)
T 1erj_A 199 CSLTLSIEDGV-----------------TTVAVSPGDGKYIAAGSLDR-------AVRVWDSETGFLVERLDSENES-GT 253 (393)
T ss_dssp EEEEEECSSCE-----------------EEEEECSTTCCEEEEEETTS-------CEEEEETTTCCEEEEEC-------C
T ss_pred eEEEEEcCCCc-----------------EEEEEECCCCCEEEEEcCCC-------cEEEEECCCCcEEEeecccccC-CC
Confidence 54322211110 222322 677777777553 23678887765432 2110000 00
Q ss_pred ccccCcceE-EEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 337 VRQAGTKLS-ITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 337 ~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
.......++ ..-++++++.|+. .+.|..||..+.
T Consensus 254 ~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~~ 288 (393)
T 1erj_A 254 GHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNA 288 (393)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC---
T ss_pred CCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCCC
Confidence 001111112 2235677777764 357888887653
No 189
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=86.24 E-value=25 Score=33.92 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc-eeecCCCC--CCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA-WSEVSSMS--VGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
++.||+..... ...++++|+.+.. ...+.... ....-+.+++. ++.||+... ...+++||+
T Consensus 182 g~~l~~~d~~~----~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~----------~~~I~~~d~ 247 (409)
T 3hrp_A 182 KQRVYSIGWEG----THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS----------NKNFGRFNV 247 (409)
T ss_dssp SSEEEEEBSST----TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT----------TCEEEEEET
T ss_pred CCcEEEEecCC----CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC----------CCcEEEEEC
Confidence 45677765321 1278999987653 22331111 11122233333 689999422 247999999
Q ss_pred CCCceEEccCCCcc-ccccccchhhcccccccee-eEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCC
Q 011957 256 RTGLWSEILSMPFS-KAQVLPTAFLADLLKPIAT-GMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGM 331 (474)
Q Consensus 256 ~t~~W~~~~~~p~~-r~~~~~~~~~~~~~~~~~~-~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~ 331 (474)
.+..-..+...+.. .....| . .+++. ++.||+..... -...+||+... -..+....
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~P------------~~~ia~~p~~g~lyv~d~~~-------~~I~~~~~~g~-~~~~~g~~ 307 (409)
T 3hrp_A 248 KTQEVTLIKQLELSGSLGTNP------------GPYLIYYFVDSNFYMSDQNL-------SSVYKITPDGE-CEWFCGSA 307 (409)
T ss_dssp TTCCEEEEEECCCCSCCCCSS------------CCEEEEETTTTEEEEEETTT-------TEEEEECTTCC-EEEEEECT
T ss_pred CCCCEEEEecccccCCCCCCc------------cccEEEeCCCCEEEEEeCCC-------CEEEEEecCCC-EEEEEeCC
Confidence 98876555221110 001000 1 33433 58999964322 22367887654 22221101
Q ss_pred -CCCCCc-----cccC--cceEEEECCEEEEEcC-CCCCCCceEEEEECCCCceEEeccCCCCCCC-------CCCCCCe
Q 011957 332 -GEGWPV-----RQAG--TKLSITVEGELYALDP-SGALDSAKIKVYDYHDDTWKVVVGDVPLPNF-------TDSESPY 395 (474)
Q Consensus 332 -~~~~p~-----~~~~--~~~~~~~~~~lyv~GG-~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~-------~~~r~~~ 395 (474)
..+... .+.. ...++.-++.||+... . .+.|.++|+.+.+-..+.+....... ..-....
T Consensus 308 ~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~----~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 308 TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK----GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT----TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC----CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCce
Confidence 000000 0011 1112333578999864 2 35899999777766665432100000 0012234
Q ss_pred EEEee-CCEEEEEecCCCCcee
Q 011957 396 LLAGL-LGKLHVITNDANHNIA 416 (474)
Q Consensus 396 ~~~~~-~~~l~v~GG~~~~~~~ 416 (474)
+++.- ++.|||... .++.+.
T Consensus 384 giavd~~g~lyVad~-~n~~Ir 404 (409)
T 3hrp_A 384 DICYDGEGGYWIAEA-WGKAIR 404 (409)
T ss_dssp EEEECSSSEEEEEES-TTCEEE
T ss_pred EEEEcCCCCEEEEEC-CCCeEE
Confidence 55544 478888665 444443
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.14 E-value=17 Score=34.00 Aligned_cols=152 Identities=9% Similarity=-0.089 Sum_probs=77.9
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCE-EEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNK-LYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
...++++|+.+.+...+..- .......... +++ |++... . ........++.+|..+..++.+.. ..+...
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~-~---~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~ 239 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHE-G---PHDLVDARMWLVNEDGSNVRKIKE-HAEGES 239 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEEC-S---CSSSCSCCCEEEETTSCCCEESSC-CCTTEE
T ss_pred cceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEec-C---CCCCCCceEEEEECCCCceeEeec-cCCCcc
Confidence 45789999999887766421 1211222222 244 444432 1 111122578899998888777654 111111
Q ss_pred cccchhhccccccceeeEE-EeCCE-EEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEE-C
Q 011957 273 VLPTAFLADLLKPIATGMS-SYRGR-LFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV-E 349 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~~~-iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~-~ 349 (474)
. ...+ .-+|+ |++.....+.. .....++|+.+++...+.. . +... ....- +
T Consensus 240 ~--------------~~~~~spdg~~l~~~~~~~~~~---~~~l~~~d~~~g~~~~l~~-~----~~~~----~~~s~~d 293 (396)
T 3c5m_A 240 C--------------THEFWIPDGSAMAYVSYFKGQT---DRVIYKANPETLENEEVMV-M----PPCS----HLMSNFD 293 (396)
T ss_dssp E--------------EEEEECTTSSCEEEEEEETTTC---CEEEEEECTTTCCEEEEEE-C----CSEE----EEEECSS
T ss_pred c--------------cceEECCCCCEEEEEecCCCCc---cceEEEEECCCCCeEEeee-C----CCCC----CCccCCC
Confidence 0 1112 22454 44432111110 0114788998888776643 1 1111 13444 7
Q ss_pred CEEEEEcCCC------------CCCCceEEEEECCCCceEEec
Q 011957 350 GELYALDPSG------------ALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 350 ~~lyv~GG~~------------~~~~~~v~~yd~~~~~W~~v~ 380 (474)
++++++.+.. ......++.+|+++++...+.
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 7777764321 112468999999988776664
No 191
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=86.13 E-value=5.8 Score=40.86 Aligned_cols=156 Identities=12% Similarity=0.149 Sum_probs=76.4
Q ss_pred eEEEeCCEEEEEcCcCCCcccceEEEEeCCCC-cee--ec----CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCcc
Q 011957 176 SIGAVDGCLYVLGGFSRALAMRNVWRYDPVLN-AWS--EV----SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 176 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~--~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 246 (474)
++...++++|+|-| +.+|+++.... ... .+ +.+|. ... ++... ++++|+|-|
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~ID-AA~~~~~~~k~yFFkG---------- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KID-AVYEAPQEEKAVFFAG---------- 508 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCS-BCCEETTTTEEEEEET----------
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceeccccCCCCCc-cce-EEEEECCCCEEEEEec----------
Confidence 44567889999976 46788776542 111 11 22332 122 22222 588999977
Q ss_pred CceEEEEeCCCCceEEccCCCccccc-cccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 247 LQSAEVFDPRTGLWSEILSMPFSKAQ-VLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 247 ~~~~~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
+..++||.. +..+..|.+... ..|. ....+-++.. ..++++|+|-|.. -++||..+++=
T Consensus 509 -~~yWry~~~----~l~~GYPk~Is~~G~P~-----~~~~IDAAf~~~~~gktYFFkG~~---------ywryd~~~~~v 569 (631)
T 1ck7_A 509 -NEYWIYSAS----TLERGYPKPLTSLGLPP-----DVQRVDAAFNWSKNKKTYIFAGDK---------FWRYNEVKKKM 569 (631)
T ss_dssp -TEEEEEETT----EECTTCCEEGGGGTCCT-----TCCCCCBCCCCTTTCEEEEEETTE---------EEEEETTTTEE
T ss_pred -CEEEEECCC----ccccCCCccchhcCCCC-----CCCcceeEEEecCCCeEEEEECCE---------EEEEcCCcccc
Confidence 457888852 223323322221 0110 0000001211 1478999986632 37888766521
Q ss_pred EEc-CCCCCCCCCccccCcceEEEEC--CEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 325 VEM-PVGMGEGWPVRQAGTKLSITVE--GELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 325 ~~~-~~~~~~~~p~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
..- +..+...|+......-++...+ +++|++-| +..|+||..+..
T Consensus 570 d~gYPk~i~~~w~G~p~~iDAAf~~~~~g~~YFFkG------~~Ywr~d~~~~~ 617 (631)
T 1ck7_A 570 DPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKG------AYYLKLENQSLK 617 (631)
T ss_dssp CTTCCEETTTSCSSCCTTCCEEECCTTSCBCEEEET------TEEECCBTTBTT
T ss_pred cCCCCcchHhhcCCCCCCCcEeEEEcCCCeEEEEEC------CEEEEEeCccce
Confidence 110 0012222222222222244433 89999976 467888876543
No 192
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=86.12 E-value=21 Score=32.85 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=36.7
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
+.+++.|+.+ ..+.+||..+.+-... +...........+ ++.+++.|+.+ ..+.+||..+.
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTT
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecC
Confidence 5677777653 4688899887653221 1111111122222 56677777743 57899999877
Q ss_pred ceE
Q 011957 259 LWS 261 (474)
Q Consensus 259 ~W~ 261 (474)
+-.
T Consensus 149 ~~~ 151 (366)
T 3k26_A 149 TLV 151 (366)
T ss_dssp EEE
T ss_pred eEE
Confidence 544
No 193
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=86.09 E-value=9.4 Score=35.38 Aligned_cols=152 Identities=9% Similarity=0.016 Sum_probs=69.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.|+.+ ..+.+||..+..|+.+..+.........+.+ + +...+.|+.+ ..+.+||..
T Consensus 164 ~~~~l~s~s~D-----~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D---------~~v~iw~~~ 229 (330)
T 2hes_X 164 SEALLASSSYD-----DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD---------STVRVWKYM 229 (330)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT---------SCEEEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC---------CeEEEEEec
Confidence 45566667654 3567777777766654433211111112222 1 3445555532 456666654
Q ss_pred C------CceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCC
Q 011957 257 T------GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVG 330 (474)
Q Consensus 257 t------~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~ 330 (474)
+ ..|.....++...... ..+++...+.+++.||.++ ...+||..++.|..+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~-------------v~~v~~s~~~~l~s~~~dg-------~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQ-------------VYNVAWGFNGLIASVGADG-------VLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSC-------------EEEEEECTTSCEEEEETTS-------CEEEEEEETTEEEEEEEE
T ss_pred CCCccccceeEEeeecccccccc-------------eEEEEEcCCCEEEEEeCCC-------EEEEEEcCCCceEEEecc
Confidence 3 2455444333211110 0233333444555565543 236788888888654321
Q ss_pred CCCCCCccccCcceEEEE---CCEEEEEcCCCCCCCceEEEEECCC
Q 011957 331 MGEGWPVRQAGTKLSITV---EGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
... ........++.. ++++++.|+.+ +.|..||.++
T Consensus 290 ~~~---h~~~~v~~v~~~~~~~~~~las~s~D----g~v~~W~~~~ 328 (330)
T 2hes_X 290 ALC---HGVYEINVVKWLELNGKTILATGGDD----GIVNFWSLEK 328 (330)
T ss_dssp SCT---TTTSCEEEEEEC-----CCEEEEETT----SEEEEEEC--
T ss_pred ccc---cccceEEEEEEecCCCceEEEEecCC----CcEEEEEecc
Confidence 100 000011112221 46677777743 5678887654
No 194
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=85.70 E-value=21 Score=32.65 Aligned_cols=152 Identities=12% Similarity=0.093 Sum_probs=74.8
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-C---CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-N---NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
..+++.|+.+. ....+.+||..+++............-.+++.. + +.+++.|+.+ ..+.+||..+
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~ 99 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG---------GNLHIWNLEA 99 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT---------SCEEEECTTS
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC---------CeEEEEeCCC
Confidence 36666665421 135788899888776543322211111122222 2 4667777643 5688999887
Q ss_pred Cc--eEEccCCCccccccccchhhccccccceeeEE-------EeCCEEEEeccCCCCcceeccceEEEcCCCCc--eEE
Q 011957 258 GL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMS-------SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS--WVE 326 (474)
Q Consensus 258 ~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~--W~~ 326 (474)
.. -..+.....+. .++. ..++++.+.|+.++ ...+||+.++. ...
T Consensus 100 ~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~s~~~~~l~~~~~d~-------~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 100 PEMPVYSVKGHKEII-----------------NAIDGIGGLGIGEGAPEIVTGSRDG-------TVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CSSCSEEECCCSSCE-----------------EEEEEESGGGCC-CCCEEEEEETTS-------CEEEECTTSCSSCSEE
T ss_pred CCccEEEEEecccce-----------------EEEeeccccccCCCccEEEEEeCCC-------eEEEEeCCCCCCccee
Confidence 64 22222111111 1111 23556666666543 23688887764 333
Q ss_pred cCCCCCCCCCccccCcceEE-----EECCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 327 MPVGMGEGWPVRQAGTKLSI-----TVEGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 327 ~~~~~~~~~p~~~~~~~~~~-----~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
+...... . ......++ ..++.+++.|+. .+.+..||.++.+=
T Consensus 156 ~~~~~~~--~--~~~v~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 156 MEPVQGE--N--KRDCWTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMAL 202 (357)
T ss_dssp ECCCTTS--C--CCCEEEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEE
T ss_pred ccccCCC--C--CCceEEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCce
Confidence 3321110 0 00111011 146777777763 35899999988764
No 195
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=85.58 E-value=21 Score=32.42 Aligned_cols=62 Identities=5% Similarity=0.014 Sum_probs=32.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-.. +..- ...-.+++.. ++++++.|+.+ ..+.+||..++
T Consensus 66 ~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D---------~~v~lWd~~~~ 129 (304)
T 2ynn_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDD---------LTVKLWNWENN 129 (304)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETT---------SCEEEEEGGGT
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEEEeCC--CCcEEEEEEcCCCCEEEEECCC---------CeEEEEECCCC
Confidence 45555666543 467888988765321 1110 1111122222 45666666643 57888888654
No 196
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=85.53 E-value=19 Score=31.96 Aligned_cols=150 Identities=10% Similarity=-0.013 Sum_probs=81.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+.-.. .+.+.++|+....-+.+...... .-..+++. +++||+..... ....++++++...
T Consensus 90 ~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~~-~P~~i~vd~~~g~lyv~~~~~-------~~~~I~~~~~dg~ 156 (267)
T 1npe_A 90 GRTIFWTDSQ-----LDRIEVAKMDGTQRRVLFDTGLV-NPRGIVTDPVRGNLYWTDWNR-------DNPKIETSHMDGT 156 (267)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCS-SEEEEEEETTTTEEEEEECCS-------SSCEEEEEETTSC
T ss_pred CCeEEEEECC-----CCEEEEEEcCCCCEEEEEECCCC-CccEEEEeeCCCEEEEEECCC-------CCcEEEEEecCCC
Confidence 6899998532 35788999876543333211111 11233443 68999975321 1257888887654
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
.-+.+..... .. | .++++- +++||+..... -...+||+....=..+..... .|
T Consensus 157 ~~~~~~~~~~--~~--P------------~gia~d~~~~~lyv~d~~~-------~~I~~~~~~g~~~~~~~~~~~--~P 211 (267)
T 1npe_A 157 NRRILAQDNL--GL--P------------NGLTFDAFSSQLCWVDAGT-------HRAECLNPAQPGRRKVLEGLQ--YP 211 (267)
T ss_dssp CCEEEECTTC--SC--E------------EEEEEETTTTEEEEEETTT-------TEEEEEETTEEEEEEEEECCC--SE
T ss_pred CcEEEEECCC--CC--C------------cEEEEcCCCCEEEEEECCC-------CEEEEEecCCCceEEEecCCC--Cc
Confidence 4333321110 01 0 344442 57899964322 223788887543222221111 12
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
.+ ++..++.||+... ..+.|.++|+++.+-..
T Consensus 212 ---~g---i~~d~~~lyva~~----~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 212 ---FA---VTSYGKNLYYTDW----KTNSVIAMDLAISKEMD 243 (267)
T ss_dssp ---EE---EEEETTEEEEEET----TTTEEEEEETTTTEEEE
T ss_pred ---eE---EEEeCCEEEEEEC----CCCeEEEEeCCCCCceE
Confidence 12 5566899999854 23589999998875443
No 197
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=85.39 E-value=5 Score=39.02 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=74.4
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCC-CCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMS-VGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.+++.|+.+ ..+.+||..+..-..+-... ....-.+++.. ++.+++.|+.+ ..+.+||.++
T Consensus 131 ~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D---------~~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME---------GTTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS---------SCEEEEETTS
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC---------CEEEEeeccC
Confidence 45577777654 35788888776543322221 11111222332 45666667653 4688999988
Q ss_pred CceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 258 GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 258 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
+.-..+.......... .++. .-++++.+.|+.++. ...||.....-..+..
T Consensus 197 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~g~~dg~-------i~~wd~~~~~~~~~~~------- 248 (435)
T 4e54_B 197 NILRVFASSDTINIWF--------------CSLDVSASSRMVVTGDNVGN-------VILLNMDGKELWNLRM------- 248 (435)
T ss_dssp CEEEEEECCSSCSCCC--------------CCEEEETTTTEEEEECSSSB-------EEEEESSSCBCCCSBC-------
T ss_pred CceeEEeccCCCCccE--------------EEEEECCCCCEEEEEeCCCc-------EeeeccCcceeEEEec-------
Confidence 7665553322111110 2222 336777777775542 3677776543211111
Q ss_pred ccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 337 VRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 337 ~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
......+++.. ++.+++.|+.+ +.|.+||..+.+
T Consensus 249 -h~~~v~~v~~~p~~~~~~~s~s~d----~~v~iwd~~~~~ 284 (435)
T 4e54_B 249 -HKKKVTHVALNPCCDWFLATASVD----QTVKIWDLRQVR 284 (435)
T ss_dssp -CSSCEEEEEECTTCSSEEEEEETT----SBCCEEETTTCC
T ss_pred -ccceEEeeeecCCCceEEEEecCc----ceeeEEeccccc
Confidence 11111112221 23466666633 467788887653
No 198
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=85.08 E-value=22 Score=32.18 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=36.1
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEEC----CEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILN----NKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~----~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
+.+++.|+.+ ..+.+||..+.+|..+..+.........+.+. +.+++.|+.+ ..+.+||..+
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~ 132 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKE 132 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCS
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecC
Confidence 5566666654 46788898888776553322111122223331 4566666643 5788888876
Q ss_pred C
Q 011957 258 G 258 (474)
Q Consensus 258 ~ 258 (474)
.
T Consensus 133 ~ 133 (297)
T 2pm7_B 133 N 133 (297)
T ss_dssp S
T ss_pred C
Confidence 5
No 199
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=84.83 E-value=24 Score=32.41 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=37.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~ 106 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD---------YSIKLWDVSNG 106 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT---------TEEEEEETTTC
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCC
Confidence 56666666643 4688899887654322 1111111222222 46666666643 57899999887
Q ss_pred ceEEc
Q 011957 259 LWSEI 263 (474)
Q Consensus 259 ~W~~~ 263 (474)
+-...
T Consensus 107 ~~~~~ 111 (369)
T 3zwl_B 107 QCVAT 111 (369)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 65433
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=84.77 E-value=40 Score=34.96 Aligned_cols=208 Identities=15% Similarity=0.094 Sum_probs=96.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCC----CccCceEEEEeC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGG----LTPLQSAEVFDP 255 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~----~~~~~~~~~yd~ 255 (474)
+|+..++...........++++|..+++......++.... ...+.. +++.++++.......+ ......+++++.
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 5554444322222224689999999988651111221111 122222 5666666554321000 012456888998
Q ss_pred CCCce--EEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 256 RTGLW--SEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 256 ~t~~W--~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
.+..- ..+...+...... ......-+|+..++...... .. ...+.+|..++.|+.+.....
T Consensus 210 ~t~~~~~~lv~~~~~~~~~~-------------~~~~~SpDG~~l~~~~~~~~-~~--~~l~~~~~~~~~~~~l~~~~~- 272 (695)
T 2bkl_A 210 GTEPSKDTVVHERTGDPTTF-------------LQSDLSRDGKYLFVYILRGW-SE--NDVYWKRPGEKDFRLLVKGVG- 272 (695)
T ss_dssp TSCGGGCEEEECCCCCTTCE-------------EEEEECTTSCCEEEEEEETT-TE--EEEEEECTTCSSCEEEEECSS-
T ss_pred CCCchhceEEEecCCCCEEE-------------EEEEECCCCCEEEEEEeCCC-Cc--eEEEEEcCCCCceEEeecCCC-
Confidence 87652 2332222111110 01112334544333322210 00 122556777778888764211
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc---eEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecC
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT---WKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~---W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~ 410 (474)
.. .. .+..+|.+|+....+ .....|+.+|+++.. |+.+...-+ ......+...+++|++....
T Consensus 273 ----~~--~~-~~~~~g~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~------~~~l~~~~~~~~~lv~~~~~ 338 (695)
T 2bkl_A 273 ----AK--YE-VHAWKDRFYVLTDEG-APRQRVFEVDPAKPARASWKEIVPEDS------SASLLSVSIVGGHLSLEYLK 338 (695)
T ss_dssp ----CC--EE-EEEETTEEEEEECTT-CTTCEEEEEBTTBCSGGGCEEEECCCS------SCEEEEEEEETTEEEEEEEE
T ss_pred ----ce--EE-EEecCCcEEEEECCC-CCCCEEEEEeCCCCCccCCeEEecCCC------CCeEEEEEEECCEEEEEEEE
Confidence 11 11 233566666654322 234689999987754 888742111 11112334457888777653
Q ss_pred CCCceeEEEEe
Q 011957 411 ANHNIAVLQAD 421 (474)
Q Consensus 411 ~~~~~~~~~~d 421 (474)
+....+..++
T Consensus 339 -dg~~~l~~~~ 348 (695)
T 2bkl_A 339 -DATSEVRVAT 348 (695)
T ss_dssp -TTEEEEEEEE
T ss_pred -CCEEEEEEEe
Confidence 3333344444
No 201
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=84.76 E-value=34 Score=34.20 Aligned_cols=142 Identities=16% Similarity=0.034 Sum_probs=71.4
Q ss_pred CEEEEEece-ecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCC
Q 011957 229 NKLYAVGGV-TRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFW 306 (474)
Q Consensus 229 ~~lyv~GG~-~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~ 306 (474)
++.++.|+. + ..+.+||..+..... ..+....... .+++ .-++++.+.|+.++
T Consensus 456 ~~~l~~~~~~d---------~~i~~~~~~~~~~~~-~~~~~~~~~v--------------~~~~~s~~g~~l~~~~~dg- 510 (615)
T 1pgu_A 456 QNYVAVGLEEG---------NTIQVFKLSDLEVSF-DLKTPLRAKP--------------SYISISPSETYIAAGDVMG- 510 (615)
T ss_dssp SSEEEEEETTT---------SCEEEEETTEEEEEE-ECSSCCSSCE--------------EEEEECTTSSEEEEEETTS-
T ss_pred CCEEEEeecCC---------CeEEEEECCCccccc-cccCCccCce--------------EEEEECCCCCEEEEcCCCC-
Confidence 556666653 2 468899998876542 2222212110 2222 23677777776553
Q ss_pred cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceE-EEE----------CCEEEEEcCCCCCCCceEEEEECCCC-
Q 011957 307 PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLS-ITV----------EGELYALDPSGALDSAKIKVYDYHDD- 374 (474)
Q Consensus 307 ~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~-~~~----------~~~lyv~GG~~~~~~~~v~~yd~~~~- 374 (474)
...+||..+++-...-... .......+ ..- ++++++.|+.+ +.|..||.++.
T Consensus 511 ------~i~iw~~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~ 574 (615)
T 1pgu_A 511 ------KILLYDLQSREVKTSRWAF------RTSKINAISWKPAEKGANEEEIEEDLVATGSLD----TNIFIYSVKRPM 574 (615)
T ss_dssp ------CEEEEETTTTEEEECCSCC------CSSCEEEEEECCCC------CCSCCEEEEEETT----SCEEEEESSCTT
T ss_pred ------eEEEeeCCCCcceeEeecC------CCCceeEEEEcCccccccccccCCCEEEEEcCC----CcEEEEECCCCc
Confidence 2378888776543321100 11111112 222 67788887643 58999999875
Q ss_pred c-eEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEE
Q 011957 375 T-WKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQA 420 (474)
Q Consensus 375 ~-W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 420 (474)
+ ...+.+ ............+++ ++.+| .++.+.+..+
T Consensus 575 ~~~~~~~~-------h~~~v~~l~~s~~~~-l~s~~-~d~~v~iw~~ 612 (615)
T 1pgu_A 575 KIIKALNA-------HKDGVNNLLWETPST-LVSSG-ADACIKRWNV 612 (615)
T ss_dssp CCEEETTS-------STTCEEEEEEEETTE-EEEEE-TTSCEEEEEE
T ss_pred eechhhhc-------CccceEEEEEcCCCC-eEEec-CCceEEEEee
Confidence 2 222211 011111223356788 66666 3444444443
No 202
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=84.71 E-value=40 Score=35.00 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=71.6
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCC--------cceeeEEEECCEEEEEeceecCCCCCcc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVG--------RAYSKIGILNNKLYAVGGVTRGPGGLTP 246 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 246 (474)
-++.++.||+... .+.++.+|..|.+ |+.-...+.. ....+.++.+++||+...
T Consensus 73 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------- 136 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------- 136 (677)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----------
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----------
Confidence 3457999999864 3578999998876 8765433211 112345667899998643
Q ss_pred CceEEEEeCCCCc--eEEccC-CCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCc
Q 011957 247 LQSAEVFDPRTGL--WSEILS-MPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNS 323 (474)
Q Consensus 247 ~~~~~~yd~~t~~--W~~~~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~ 323 (474)
...+..+|.++++ |+.-.. -+...... ..+.++.++++|+..+..... .+-....||.++++
T Consensus 137 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~-------------~~~p~v~~~~v~v~~~~~~~~--~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 137 DGRLIALDAATGKEVWHQNTFEGQKGSLTI-------------TGAPRVFKGKVIIGNGGAEYG--VRGYITAYDAETGE 201 (677)
T ss_dssp TSEEEEEETTTCCEEEEEETTTTCCSSCBC-------------CSCCEEETTEEEECCBCTTTC--CBCEEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEeeecCCcCcCcCccc-------------ccCcEEECCEEEEEecccccC--CCCEEEEEECCCCc
Confidence 1478999998775 875432 11100110 023356789999854321100 01123789998876
Q ss_pred --eEEcC
Q 011957 324 --WVEMP 328 (474)
Q Consensus 324 --W~~~~ 328 (474)
|+.-.
T Consensus 202 ~~W~~~~ 208 (677)
T 1kb0_A 202 RKWRWFS 208 (677)
T ss_dssp EEEEEES
T ss_pred EEEEecc
Confidence 87643
No 203
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.57 E-value=37 Score=37.81 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=35.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE----CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.|+.+ ..+.+||..+.+-...-. .......++.+ ++.+++.|+.+ ..+.+||..
T Consensus 668 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d---------~~v~vwd~~ 731 (1249)
T 3sfz_A 668 DDSYIATCSAD-----KKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSND---------FFLKLWDLN 731 (1249)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETT---------SCEEEEETT
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCC---------CeEEEEECC
Confidence 55566666543 468899998876433211 11111222222 23345555532 568899998
Q ss_pred CCceE
Q 011957 257 TGLWS 261 (474)
Q Consensus 257 t~~W~ 261 (474)
+..-.
T Consensus 732 ~~~~~ 736 (1249)
T 3sfz_A 732 QKECR 736 (1249)
T ss_dssp SSSEE
T ss_pred Ccchh
Confidence 87643
No 204
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=84.27 E-value=9.5 Score=34.80 Aligned_cols=56 Identities=16% Similarity=-0.041 Sum_probs=32.0
Q ss_pred ceEEEEeCCCCceeecCCCCCCc-ceeeEEEE-C-CEEEEEeceecCCCCCccCceEEEEeCCCCceE
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGR-AYSKIGIL-N-NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWS 261 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 261 (474)
..+.++|+.+.+-...-.++... .-..++.- + ..+|+.+.. ...+.+||+.+.+-.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---------~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---------SESLVKIDLVTGETL 69 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---------TTEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC---------CCeEEEEECCCCCeE
Confidence 57888998887644322222210 11223322 3 478887653 257999999887654
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=84.22 E-value=16 Score=33.41 Aligned_cols=119 Identities=21% Similarity=0.301 Sum_probs=62.3
Q ss_pred EeCCEEEEE----cCcCC--------CcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-C-CEEEEEeceecCCCCC
Q 011957 179 AVDGCLYVL----GGFSR--------ALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-N-NKLYAVGGVTRGPGGL 244 (474)
Q Consensus 179 ~~~~~lyv~----GG~~~--------~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~ 244 (474)
.-+|.||+. |-... ......+++||+.+++.+.+. .... ....+.. + ..||+...... .
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~-p~gl~~spdg~~lyv~~~~~~----~ 211 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH-PNGLAFSPDEQTLYVSQTPEQ----G 211 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS-EEEEEECTTSSEEEEEECCC------
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC-CcceEEcCCCCEEEEEecCCc----C
Confidence 347889986 32210 112467999999888877654 1111 1122332 3 35888754210 0
Q ss_pred ccCceEEEEeCCCCceEE---ccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCC
Q 011957 245 TPLQSAEVFDPRTGLWSE---ILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPD 320 (474)
Q Consensus 245 ~~~~~~~~yd~~t~~W~~---~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~ 320 (474)
.....+++||...+.... ....+. .. + .+++ .-+|+||+..+ -+..+||+.
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~--~~--p------------dgi~~d~~G~lwv~~~---------~gv~~~~~~ 266 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHFASVPD--GL--P------------DGFCVDRGGWLWSSSG---------TGVCVFDSD 266 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSS--SC--C------------CSEEECTTSCEEECCS---------SEEEEECTT
T ss_pred CCCCEEEEEEecCCCccCCeEEEECCC--CC--C------------CeEEECCCCCEEEecC---------CcEEEECCC
Confidence 012578899887654221 111110 00 0 1222 34688988552 345899997
Q ss_pred CCceEEcCC
Q 011957 321 VNSWVEMPV 329 (474)
Q Consensus 321 t~~W~~~~~ 329 (474)
...-..+..
T Consensus 267 g~~~~~~~~ 275 (305)
T 3dr2_A 267 GQLLGHIPT 275 (305)
T ss_dssp SCEEEEEEC
T ss_pred CCEEEEEEC
Confidence 666655543
No 206
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=83.96 E-value=43 Score=34.72 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=32.9
Q ss_pred ceEEEEeCCCC---ceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccC
Q 011957 197 RNVWRYDPVLN---AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILS 265 (474)
Q Consensus 197 ~~v~~yd~~t~---~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 265 (474)
..++++|..++ +-..+...... .......-+++..+++.. ..++++|..+++...+..
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~-~~~~~~SPDG~~la~~~~----------~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGF-ATDAKLSPKGGFVSFIRG----------RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSC-EEEEEECTTSSEEEEEET----------TEEEEEETTTTEEEECCC
T ss_pred CcEEEEECCCCCcceEEEcccCCcc-cccccCCCCCCEEEEEeC----------CcEEEEecCCCCEEEecc
Confidence 68999999887 54444332111 111111125554444431 379999999887776643
No 207
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.77 E-value=31 Score=32.87 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=86.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC---CCC--c-------ceeeEEEE----CCEEEEEeceecCCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM---SVG--R-------AYSKIGIL----NNKLYAVGGVTRGPGGL 244 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~--r-------~~~~~~~~----~~~lyv~GG~~~~~~~~ 244 (474)
.+.||+.+.... .-.-+++.+-...+|+.+... +.. + .-.++++. .+.||+.+.
T Consensus 67 ~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------- 136 (394)
T 3b7f_A 67 PERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------- 136 (394)
T ss_dssp TTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE--------
T ss_pred CCeEEEEecCCC--CCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec--------
Confidence 567887653210 112577877778899987532 211 1 11122332 467777542
Q ss_pred ccCceEEEEeCCCCceEEccCC---CccccccccchhhccccccceeeEEEe---CCEEEEeccCCCCcceeccceEEEc
Q 011957 245 TPLQSAEVFDPRTGLWSEILSM---PFSKAQVLPTAFLADLLKPIATGMSSY---RGRLFVPQSLYFWPFFVDVGGEVYD 318 (474)
Q Consensus 245 ~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~iyv~gG~~~~~~~~~~gg~~yd 318 (474)
...+++.+-...+|+.+..+ |..+.. .+...-........+.+++. .+.||+.... -+..+.+
T Consensus 137 --~ggl~~S~DgG~tW~~~~~~~~~p~~~~~-~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~--------ggl~~s~ 205 (394)
T 3b7f_A 137 --PQGLFRSTDHGASWEPVAGFNDHPMRRAW-TGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS--------GGVFEST 205 (394)
T ss_dssp --TTEEEEESSTTSBCEECHHHHTCTTHHHH-HCCC----CCCCEEEEEEECTTCTTCEEEEEET--------BEEEEES
T ss_pred --CCcEEEEcCCCCCeEECcCccCCcccccc-ccccccCCCCCCceeEEEECCCCCCEEEEEECC--------CCEEEEC
Confidence 13577777778899987532 210000 00000000000001333332 3578874321 1236677
Q ss_pred CCCCceEEcCCCCCC-CCCccc--cC--cceEEEE-C--CEEEEEcCCCCCCCceEEEEECCCCceEEeccCCC
Q 011957 319 PDVNSWVEMPVGMGE-GWPVRQ--AG--TKLSITV-E--GELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVP 384 (474)
Q Consensus 319 ~~t~~W~~~~~~~~~-~~p~~~--~~--~~~~~~~-~--~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p 384 (474)
-...+|+.+...... .+|... .+ ...++.. + +.||+... ..|++.+-...+|+.+...+|
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~------~gl~~s~D~G~tW~~~~~~l~ 273 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH------CGIYRMDRREGVWKRIGDAMP 273 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET------TEEEEEETTTTEEECGGGGSC
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC------CeEEEeCCCCCcceECCCCCC
Confidence 777899998642211 112110 01 1112222 1 66777532 468888888899999853333
No 208
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=83.54 E-value=12 Score=32.83 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=17.5
Q ss_pred ECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 348 VEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 348 ~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.++++|++-| +..|+||..+++
T Consensus 134 ~~g~~YfFkG------~~ywr~d~~~~~ 155 (218)
T 1gen_A 134 KNKKTYIFAG------DKFWRYNEVKKK 155 (218)
T ss_dssp TTTEEEEEET------TEEEEEETTTTE
T ss_pred CCCeEEEEEC------CEEEEEECcccc
Confidence 3689999976 578999987763
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=83.50 E-value=28 Score=32.15 Aligned_cols=112 Identities=8% Similarity=0.070 Sum_probs=62.4
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeE-EEeCCEEEEeccCCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGM-SSYRGRLFVPQSLYFW 306 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~iyv~gG~~~~ 306 (474)
++.+|+++... ..+.+||+.+++.+.+. ++... .++ ..-+|++|+...
T Consensus 60 ~~~l~~~d~~~---------~~i~~~d~~~~~~~~~~-~~~~v-----------------~~i~~~~dg~l~v~~~---- 108 (326)
T 2ghs_A 60 SGTAWWFNILE---------RELHELHLASGRKTVHA-LPFMG-----------------SALAKISDSKQLIASD---- 108 (326)
T ss_dssp TTEEEEEEGGG---------TEEEEEETTTTEEEEEE-CSSCE-----------------EEEEEEETTEEEEEET----
T ss_pred CCEEEEEECCC---------CEEEEEECCCCcEEEEE-CCCcc-----------------eEEEEeCCCeEEEEEC----
Confidence 36888886532 57899999988765443 22111 222 345788888542
Q ss_pred cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCC--CCCCCceEEEEECCCCceEEe
Q 011957 307 PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPS--GALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 307 ~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~--~~~~~~~v~~yd~~~~~W~~v 379 (474)
.+..+||+.+++.+.+.. .....+..+.. ..++.-+|++|+.... .......|+.|| +.+...+
T Consensus 109 -----~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 109 -----DGLFLRDTATGVLTLHAE-LESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp -----TEEEEEETTTCCEEEEEC-SSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred -----CCEEEEECCCCcEEEEee-CCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 345899999999887643 11111111111 1133446788875321 111235899999 4555554
No 210
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=83.36 E-value=2.8 Score=37.20 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCC--CCCC---CCCCCCeEEEe--eCCEEEEEec
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVP--LPNF---TDSESPYLLAG--LLGKLHVITN 409 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p--~~~~---~~~r~~~~~~~--~~~~l~v~GG 409 (474)
++++|++-| +..|+||..+++-..-+..+. .+.. ..+..--++.. .++++|+|-|
T Consensus 127 ~gk~yfFkG------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG 188 (225)
T 3oyo_A 127 GKEVYLFKG------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG 188 (225)
T ss_dssp TTEEEEEET------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET
T ss_pred CCcEEEEeC------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC
Confidence 689999976 578999987765443100010 0111 00111123333 4799999988
No 211
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=83.12 E-value=30 Score=32.26 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEE-EECCEEEEEcCCCCCCCceEEEEECC
Q 011957 294 RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI-TVEGELYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 294 ~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~ 372 (474)
++.+++.|+.++ ....||..+++....-.... ....+++ .-++.+++.|+. .+.+..||..
T Consensus 209 ~g~~l~sgs~Dg-------~v~~wd~~~~~~~~~~~~h~-------~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~ 270 (354)
T 2pbi_B 209 TGNTFVSGGCDK-------KAMVWDMRSGQCVQAFETHE-------SDVNSVRYYPSGDAFASGSD----DATCRLYDLR 270 (354)
T ss_dssp SCCEEEEEETTS-------CEEEEETTTCCEEEEECCCS-------SCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCCEEEEEeCCC-------eEEEEECCCCcEEEEecCCC-------CCeEEEEEeCCCCEEEEEeC----CCeEEEEECC
Confidence 356677676553 23788888876543221010 1111122 225677777764 3578999998
Q ss_pred CCc
Q 011957 373 DDT 375 (474)
Q Consensus 373 ~~~ 375 (474)
+++
T Consensus 271 ~~~ 273 (354)
T 2pbi_B 271 ADR 273 (354)
T ss_dssp TTE
T ss_pred CCc
Confidence 764
No 212
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=83.11 E-value=31 Score=32.40 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=97.0
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecC--CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVS--SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
.++.||+.--. ...++++++....-+.+. .+..| .++++ .+++||+.-.. ...++++|+
T Consensus 83 ~~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~~~~p---~glavd~~~g~ly~~d~~---------~~~I~~~~~ 145 (349)
T 3v64_C 83 RRELVFWSDVT-----LDRILRANLNGSNVEEVVSTGLESP---GGLAVDWVHDKLYWTDSG---------TSRIEVANL 145 (349)
T ss_dssp TTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEET
T ss_pred cccEEEEEecc-----CCceEEEecCCCCceEEEeCCCCCc---cEEEEecCCCeEEEEcCC---------CCeEEEEcC
Confidence 36889987422 357899999887655442 22222 23333 37899997542 257899998
Q ss_pred CCCceEEcc--CCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCC
Q 011957 256 RTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGM 331 (474)
Q Consensus 256 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~ 331 (474)
....-+.+. .+..| .++++. ++.||+..-... -..+++|+....-+.+.. .
T Consensus 146 dG~~~~~l~~~~l~~P------------------~~iavdp~~g~ly~td~~~~------~~I~r~~~dG~~~~~~~~-~ 200 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKP------------------RAIALHPMEGTIYWTDWGNT------PRIEASSMDGSGRRIIAD-T 200 (349)
T ss_dssp TSCSCEEEECTTCSCE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCSCEESCC-S
T ss_pred CCCceEEEEeCCCCCc------------------ceEEEecCcCeEEEeccCCC------CEEEEEeCCCCCcEEEEE-C
Confidence 765434332 22222 233443 788998542210 123778776554444322 1
Q ss_pred CCCCCccccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 332 GEGWPVRQAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
...+|. + +++ .+++||+... ..+.|+++|++...=+.+.. . . .....++++.++.||+.--
T Consensus 201 ~~~~Pn---G---la~d~~~~~lY~aD~----~~~~I~~~~~dG~~~~~~~~-~---~---~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 201 HLFWPN---G---LTIDYAGRRMYWVDA----KHHVIERANLDGSHRKAVIS-Q---G---LPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp SCSCEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEC-S---S---CSSEEEEEEETTEEEEEET
T ss_pred CCCCcc---e---EEEeCCCCEEEEEEC----CCCEEEEEeCCCCceEEEEe-C---C---CCCceEEEEECCEEEEecC
Confidence 111121 1 333 4789999964 23689999987643333321 0 1 1223677778999999865
No 213
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.98 E-value=6.2 Score=44.24 Aligned_cols=182 Identities=9% Similarity=-0.026 Sum_probs=87.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
++..+++|+.+ ..+.+||..+.+-.....-...........-+++..+.|+.+ ..+.+||..++..
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---------g~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED---------SVIQVWNWQTGDY 1037 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS---------SBEEEEETTTTEE
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCce
Confidence 45555566543 457788887765333211111111111112256666677643 5789999998876
Q ss_pred EEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcccc
Q 011957 261 SEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQA 340 (474)
Q Consensus 261 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~ 340 (474)
........+. ..++...+..++.++.++ ...+||..+++-...-.... ...
T Consensus 1038 ~~~~~~~~~v-----------------~~~~~~~~~~l~~~~~dg-------~v~vwd~~~~~~~~~~~~~~-----~~v 1088 (1249)
T 3sfz_A 1038 VFLQAHQETV-----------------KDFRLLQDSRLLSWSFDG-------TVKVWNVITGRIERDFTCHQ-----GTV 1088 (1249)
T ss_dssp ECCBCCSSCE-----------------EEEEECSSSEEEEEESSS-------EEEEEETTTTCCCEEEECCS-----SCC
T ss_pred EEEecCCCcE-----------------EEEEEcCCCcEEEEECCC-------cEEEEECCCCceeEEEcccC-----CcE
Confidence 6443221111 233333333445454442 23678887765322111011 111
Q ss_pred CcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEE--EeeCCEEEEEecCCCCceeEE
Q 011957 341 GTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLL--AGLLGKLHVITNDANHNIAVL 418 (474)
Q Consensus 341 ~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~--~~~~~~l~v~GG~~~~~~~~~ 418 (474)
...+..-++++++.|+.+ +.+..||..+.+- +. .+......... ...++++++.|+. ++.+.+.
T Consensus 1089 -~~~~~s~d~~~l~s~s~d----~~v~iwd~~~~~~--~~------~l~~h~~~v~~~~~s~dg~~lat~~~-dg~i~vw 1154 (1249)
T 3sfz_A 1089 -LSCAISSDATKFSSTSAD----KTAKIWSFDLLSP--LH------ELKGHNGCVRCSAFSLDGILLATGDD-NGEIRIW 1154 (1249)
T ss_dssp -CCEEECSSSSSCEEECCS----SCCCEECSSSSSC--SB------CCCCCSSCEEEEEECSSSSEEEEEET-TSCCCEE
T ss_pred -EEEEECCCCCEEEEEcCC----CcEEEEECCCcce--ee------eeccCCCcEEEEEECCCCCEEEEEeC-CCEEEEE
Confidence 111344567777777643 4678888876541 11 11111112222 2347778888874 3344444
Q ss_pred E
Q 011957 419 Q 419 (474)
Q Consensus 419 ~ 419 (474)
.
T Consensus 1155 d 1155 (1249)
T 3sfz_A 1155 N 1155 (1249)
T ss_dssp E
T ss_pred E
Confidence 3
No 214
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=82.52 E-value=19 Score=36.29 Aligned_cols=157 Identities=11% Similarity=0.003 Sum_probs=75.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CC-EEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NN-KLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+|+.... ...++++|..+.+-..+..++..+.-+..+.- ++ ++|+.+.. .+.+.++|.+++
T Consensus 291 ~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~---------~~~v~v~D~~tg 356 (543)
T 1nir_A 291 HPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN---------SNKVAVIDSKDR 356 (543)
T ss_dssp SSEEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG---------GTEEEEEETTTT
T ss_pred CCEEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC---------CCeEEEEECCCC
Confidence 4555555422 46889999877542221122223333333333 34 46665432 267889999988
Q ss_pred ceEEc---cCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCC-----ceEEcCC
Q 011957 259 LWSEI---LSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVN-----SWVEMPV 329 (474)
Q Consensus 259 ~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~-----~W~~~~~ 329 (474)
+-... ...|.+-.+ .....- ++.+|+.+.... -...++|..+. .|+.+..
T Consensus 357 ~l~~~i~~g~~ph~g~g---------------~~~~~p~~g~~~~s~~~~d------~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 357 RLSALVDVGKTPHPGRG---------------ANFVHPKYGPVWSTSHLGD------GSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EEEEEEECSSSBCCTTC---------------EEEEETTTEEEEEEEBSSS------SEEEEEECCTTTCTTTBTSEEEE
T ss_pred eEEEeeccCCCCCCCCC---------------cccCCCCCccEEEeccCCC------ceEEEEEeCCCCCchhcCeEEEE
Confidence 65432 222322222 222222 367887654221 12256777662 2776544
Q ss_pred CCCCCCCccccCcceEEEECCEEEEEcCCCCC---CCceEEEEECCCCce
Q 011957 330 GMGEGWPVRQAGTKLSITVEGELYALDPSGAL---DSAKIKVYDYHDDTW 376 (474)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~v~~yd~~~~~W 376 (474)
+... .....+ ....-+++...++...+. ..+.|.+||.++.+-
T Consensus 416 -l~~~-g~~~~~--v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 416 -LQGQ-GGGSLF--IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp -EECS-CSCCCC--EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred -EEcC-CCCceE--EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 2110 001111 122234444444332111 145899999998763
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=82.48 E-value=27 Score=31.38 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=57.1
Q ss_pred ceEEEEeCCCCceEEccCCCc---cccccccchhhccccccceeeEEE-eC-CEEEEeccCCCCcceeccceEEEcCCCC
Q 011957 248 QSAEVFDPRTGLWSEILSMPF---SKAQVLPTAFLADLLKPIATGMSS-YR-GRLFVPQSLYFWPFFVDVGGEVYDPDVN 322 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~---~r~~~~~~~~~~~~~~~~~~~~~~-~~-~~iyv~gG~~~~~~~~~~gg~~yd~~t~ 322 (474)
..+.+||+.+++++.+.. +. .... ..+++. -+ +++|+.... .+..+||+. +
T Consensus 46 ~~i~~~d~~~g~~~~~~~-~~~~~~~~~--------------~~~i~~~~~~g~l~v~~~~--------~~l~~~d~~-g 101 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICK-PEVNGYGGI--------------PAGCQCDRDANQLFVADMR--------LGLLVVQTD-G 101 (314)
T ss_dssp CEEEEECTTTCCEEEEEC-CEETTEECC--------------EEEEEECSSSSEEEEEETT--------TEEEEEETT-S
T ss_pred CEEEEEeCCCCcEEEEEe-cccCCCCCC--------------CceEEEecCCCcEEEEECC--------CCEEEEeCC-C
Confidence 578999999988876542 10 0011 033333 35 789986531 245789998 7
Q ss_pred ceEEc-CCCCCCCCCccccCcceEEEECCEEEEEcCCCC-----------CCCceEEEEECCCCceEEe
Q 011957 323 SWVEM-PVGMGEGWPVRQAGTKLSITVEGELYALDPSGA-----------LDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 323 ~W~~~-~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~-----------~~~~~v~~yd~~~~~W~~v 379 (474)
+...+ .. .....+... -...++.-++++|+...... .....++.||++ .+...+
T Consensus 102 ~~~~~~~~-~~~~~~~~~-~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 102 TFEEIAKK-DSEGRRMQG-CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp CEEECCSB-CTTSCBCBC-CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CEEEEEec-cCCCccccC-CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 77765 32 111111111 11213334678988754220 112579999987 655554
No 216
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=82.29 E-value=33 Score=32.23 Aligned_cols=191 Identities=11% Similarity=0.066 Sum_probs=92.1
Q ss_pred EEEEEcCcCCCcccceEEEEeCCCCceeecC--CCCCCcce-eeEEEE---CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 183 CLYVLGGFSRALAMRNVWRYDPVLNAWSEVS--SMSVGRAY-SKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 183 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
..++.|+.+ ..+.+||..+.+-...- ..+..... .....+ ++.+++.|+.+ ..+.+||..
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D---------~~v~~wd~~ 236 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---------TTVRLWDLR 236 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT---------SCEEEEETT
T ss_pred CEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC---------CeEEEEECC
Confidence 344555543 46788898887644321 22222211 112222 56788888754 578899986
Q ss_pred CC--ceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 257 TG--LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 257 t~--~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
.. .-..+... .... .+++. -+++.++.|+.++. ...||..++.-...-.....
T Consensus 237 ~~~~~~~~~~~h---~~~v--------------~~v~~~p~~~~l~s~s~D~~-------i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 237 ITSRAVRTYHGH---EGDI--------------NSVKFFPDGQRFGTGSDDGT-------CRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp TTCCCCEEECCC---SSCC--------------CEEEECTTSSEEEEECSSSC-------EEEEETTTTEEEEEECCCCS
T ss_pred CCCcceEEECCc---CCCe--------------EEEEEecCCCeEEEEcCCCe-------EEEEECCCCcEEEEeccccc
Confidence 32 11111110 1110 22222 36677777776542 36788877653322110100
Q ss_pred CCCcc-ccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCC
Q 011957 334 GWPVR-QAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDAN 412 (474)
Q Consensus 334 ~~p~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~ 412 (474)
..... ..-...+...++++++.|+. .+.|..||..+.+-......+.. ....+........+++.++.|+. +
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~sgs~-D 365 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYS----NGDCYVWDTLLAEMVLNLGTLQN--SHEGRISCLGLSSDGSALCTGSW-D 365 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECT----TSCEEEEETTTCCEEEEECCSCS--SCCCCCCEEEECSSSSEEEEECT-T
T ss_pred ccccccCceEEEEECCCCCEEEEEEC----CCCEEEEECCCCceEEEEecccC--CCCCceEEEEECCCCCEEEEeeC-C
Confidence 00000 01112234457788888764 35799999887654332111111 11222223334457788888874 3
Q ss_pred CceeEE
Q 011957 413 HNIAVL 418 (474)
Q Consensus 413 ~~~~~~ 418 (474)
+.+.+.
T Consensus 366 ~~i~iW 371 (380)
T 3iz6_a 366 KNLKIW 371 (380)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 444443
No 217
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=82.03 E-value=29 Score=31.30 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=33.9
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCC-------ceeecCCCCCCcceeeEEEE--C--CEEEEEeceecCCCCCccCceE
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLN-------AWSEVSSMSVGRAYSKIGIL--N--NKLYAVGGVTRGPGGLTPLQSA 250 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~-------~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~ 250 (474)
+.+++.|+.+ ..+.+||..+. .|+.+..+.........+.+ + +.+++.|+.+ ..+
T Consensus 71 ~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v 136 (351)
T 3f3f_A 71 GRIIASASYD-----KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND---------GIL 136 (351)
T ss_dssp CSEEEEEETT-----SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---------CEE
T ss_pred CCEEEEEcCC-----CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC---------CcE
Confidence 5666666654 35777777664 23333322222222222222 2 5666666642 578
Q ss_pred EEEeCCCCc
Q 011957 251 EVFDPRTGL 259 (474)
Q Consensus 251 ~~yd~~t~~ 259 (474)
.+||..+.+
T Consensus 137 ~iwd~~~~~ 145 (351)
T 3f3f_A 137 RLYDALEPS 145 (351)
T ss_dssp EEEECSSTT
T ss_pred EEecCCChH
Confidence 899987654
No 218
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=81.98 E-value=21 Score=31.86 Aligned_cols=148 Identities=7% Similarity=0.046 Sum_probs=70.5
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
++..++.|+.+ ..+.+||.... -..+..............-+++ ++.|+.+ ..+.+||..+.+-
T Consensus 154 ~~~~l~~~~~d-----~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d---------g~i~i~d~~~~~~ 217 (313)
T 3odt_A 154 SENKFLTASAD-----KTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSND---------GLIKLVDMHTGDV 217 (313)
T ss_dssp TTTEEEEEETT-----SCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETT---------SEEEEEETTTCCE
T ss_pred CCCEEEEEECC-----CCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCC---------CeEEEEECCchhh
Confidence 45555666543 45778883221 1222221222222222334667 5666542 5789999987653
Q ss_pred EEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccc
Q 011957 261 SEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQ 339 (474)
Q Consensus 261 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~ 339 (474)
... +...... ..+++.. +++ ++.|+.++ ...+||..+++-...-. .. ...
T Consensus 218 ~~~--~~~~~~~--------------i~~~~~~~~~~-l~~~~~dg-------~v~iwd~~~~~~~~~~~-~~----~~~ 268 (313)
T 3odt_A 218 LRT--YEGHESF--------------VYCIKLLPNGD-IVSCGEDR-------TVRIWSKENGSLKQVIT-LP----AIS 268 (313)
T ss_dssp EEE--EECCSSC--------------EEEEEECTTSC-EEEEETTS-------EEEEECTTTCCEEEEEE-CS----SSC
T ss_pred hhh--hhcCCce--------------EEEEEEecCCC-EEEEecCC-------EEEEEECCCCceeEEEe-cc----Cce
Confidence 221 1111111 0233333 444 44454432 23788988876543322 11 111
Q ss_pred cCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 340 AGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 340 ~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
. ...+...+++ ++.|+. .+.|..||.+++++...
T Consensus 269 i-~~~~~~~~~~-~~~~~~----dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 269 I-WSVDCMSNGD-IIVGSS----DNLVRIFSQEKSRWASE 302 (313)
T ss_dssp E-EEEEECTTSC-EEEEET----TSCEEEEESCGGGCCC-
T ss_pred E-EEEEEccCCC-EEEEeC----CCcEEEEeCCCCceeeh
Confidence 1 1112333566 445553 35899999998877653
No 219
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=81.55 E-value=49 Score=33.65 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=47.0
Q ss_pred EEEeCCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCC---c---ceeeEEEECCEEEEEeceecCCCCCccCc
Q 011957 177 IGAVDGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVG---R---AYSKIGILNNKLYAVGGVTRGPGGLTPLQ 248 (474)
Q Consensus 177 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~---r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 248 (474)
-++.++.||+.... ..++.+|..|.+ |+.-...+.. . ...+.++.+++||+... ..
T Consensus 64 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----------dg 127 (582)
T 1flg_A 64 AIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----------DA 127 (582)
T ss_dssp CEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET----------TT
T ss_pred cEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC----------CC
Confidence 35679999998653 248999998876 8764433221 1 11334567899988532 24
Q ss_pred eEEEEeCCCCc--eEEc
Q 011957 249 SAEVFDPRTGL--WSEI 263 (474)
Q Consensus 249 ~~~~yd~~t~~--W~~~ 263 (474)
.+..+|.++++ |+.-
T Consensus 128 ~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKK 144 (582)
T ss_dssp EEEEEESSSCCEEEEEE
T ss_pred EEEEEECCCCCEEeeec
Confidence 78999998875 8754
No 220
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.44 E-value=33 Score=31.60 Aligned_cols=65 Identities=11% Similarity=-0.019 Sum_probs=38.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
++.+++.|+.+ ..+.+||..+.+-...........-.+++.. ++.+++.|+.+ ..+.+||..+.+
T Consensus 138 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d---------g~i~iwd~~~~~ 203 (343)
T 3lrv_A 138 NTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD---------GILDVYNLSSPD 203 (343)
T ss_dssp -CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT---------SCEEEEESSCTT
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC---------CEEEEEECCCCC
Confidence 45666767653 4688899988775433222222111222222 57777777743 578999998765
No 221
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=81.22 E-value=39 Score=32.23 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=38.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeec-CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEV-SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.+++.|+.+ ..+.+||..+.+-... ...+. .....++.+ ++++++.|+.+ ..+.+||..+
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPR-HGAVSSICIDEECCVLILGTTR---------GIIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGG-GCCEEEEEECTTSCEEEEEETT---------SCEEEEETTT
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCC-CCceEEEEECCCCCEEEEEcCC---------CeEEEEEcCC
Confidence 46777777653 5788999988664322 21111 112222333 56777777743 5689999987
Q ss_pred CceE
Q 011957 258 GLWS 261 (474)
Q Consensus 258 ~~W~ 261 (474)
.+-.
T Consensus 246 ~~~~ 249 (437)
T 3gre_A 246 NVLI 249 (437)
T ss_dssp TEEE
T ss_pred ccEE
Confidence 6543
No 222
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=80.95 E-value=15 Score=34.11 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+..+..+..+.........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 72 ~g~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~ 137 (345)
T 3fm0_A 72 CGNYLASASFD-----ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEE 137 (345)
T ss_dssp TSSEEEEEETT-----SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTT
T ss_pred CCCEEEEEECC-----CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCC
Confidence 56666677654 3466777777665544332221112222222 56677777643 56888888664
Q ss_pred c-eEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 259 L-WSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 259 ~-W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
. +..+..+....... .+++ .-++++.+.|+.++ ....||..++.|..+.. +..
T Consensus 138 ~~~~~~~~~~~h~~~v--------------~~~~~~p~~~~l~s~s~d~-------~i~~w~~~~~~~~~~~~-~~~--- 192 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDV--------------KHVVWHPSQELLASASYDD-------TVKLYREEEDDWVCCAT-LEG--- 192 (345)
T ss_dssp SCEEEEEEECCCCSCE--------------EEEEECSSSSCEEEEETTS-------CEEEEEEETTEEEEEEE-ECC---
T ss_pred CCeEEEEEecCcCCCe--------------EEEEECCCCCEEEEEeCCC-------cEEEEEecCCCEEEEEE-ecC---
Confidence 3 33222221111110 2222 23566666666553 23678888887764332 110
Q ss_pred ccccCc-ceEEEECCEEEEEcCCCCCCCceEEEEEC
Q 011957 337 VRQAGT-KLSITVEGELYALDPSGALDSAKIKVYDY 371 (474)
Q Consensus 337 ~~~~~~-~~~~~~~~~lyv~GG~~~~~~~~v~~yd~ 371 (474)
..... ..+..-++++++.|+.+ +.|..||.
T Consensus 193 -h~~~v~~l~~sp~g~~l~s~s~D----~~v~iW~~ 223 (345)
T 3fm0_A 193 -HESTVWSLAFDPSGQRLASCSDD----RTVRIWRQ 223 (345)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETT----SCEEEEEE
T ss_pred -CCCceEEEEECCCCCEEEEEeCC----CeEEEecc
Confidence 00111 11223356777777643 45666663
No 223
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=80.66 E-value=34 Score=31.26 Aligned_cols=142 Identities=8% Similarity=0.031 Sum_probs=72.1
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+.+++.|+.+ ..+.+||..+........+.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~ 119 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD---------KTAKMWDLSSNQ 119 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC---------CcEEEEEcCCCC
Confidence 4777777654 4678888876332221111111111122222 56666666642 578999999887
Q ss_pred eEEccCCCccccccccchhhccccccceeeEE---EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMS---SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
-........+. .++. ..++++++.|+.++ ...+||..+++-...-. . +
T Consensus 120 ~~~~~~~~~~v-----------------~~~~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~-~----~ 170 (368)
T 3mmy_A 120 AIQIAQHDAPV-----------------KTIHWIKAPNYSCVMTGSWDK-------TLKFWDTRSSNPMMVLQ-L----P 170 (368)
T ss_dssp EEEEEECSSCE-----------------EEEEEEECSSCEEEEEEETTS-------EEEEECSSCSSCSEEEE-C----S
T ss_pred ceeeccccCce-----------------EEEEEEeCCCCCEEEEccCCC-------cEEEEECCCCcEEEEEe-c----C
Confidence 65543221111 2223 23667777666553 23678887664221111 0 1
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
.. ..+.....+.+++.+. .+.+..||....
T Consensus 171 ~~---~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~ 200 (368)
T 3mmy_A 171 ER---CYCADVIYPMAVVATA-----ERGLIVYQLENQ 200 (368)
T ss_dssp SC---EEEEEEETTEEEEEEG-----GGCEEEEECSSS
T ss_pred CC---ceEEEecCCeeEEEeC-----CCcEEEEEeccc
Confidence 11 1113445555555443 346788888765
No 224
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=80.51 E-value=23 Score=33.19 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=37.0
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEE-ECCE-EEEEeceecCCCCCccCceEEEEeCCCCceEEccCCC
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI-LNNK-LYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMP 267 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 267 (474)
...++++|+.+...+.+............+. -+++ |+.... ... .....++++|+.+++-+.+..++
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~-~~~----~~~~~l~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 215 DARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSY-LKG----SPDRFIYSADPETLENRQLTSMP 283 (388)
T ss_dssp SCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEE-ETT----CCCEEEEEECTTTCCEEEEEEEC
T ss_pred cceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEec-CCC----CCcceEEEEecCCCceEEEEcCC
Confidence 5689999998877766654332111111122 1454 444332 211 11235999999998877665443
No 225
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=80.18 E-value=33 Score=30.74 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=32.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+++.++.|+.+ ..+.+||..+++-...-..... ........+.+.+.|+.. ..+..++..+..
T Consensus 78 ~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~~~h~~--~~~~~~~~~~~l~s~~~~---------~~~~~~~~~~~~ 140 (318)
T 4ggc_A 78 EGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSHSA--RVGSLSWNSYILSSGSRS---------GHIHHHDVRVAE 140 (318)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSS--CEEEEEEETTEEEEEETT---------SEEEEEETTSSS
T ss_pred CCCEEEEEECC-----CcEEEeecCCceeEEEecCccc--eEEEeecCCCEEEEEecC---------CceEeeecCCCc
Confidence 56667777654 4678889888764332111111 122333445555555532 345556655543
No 226
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=80.16 E-value=40 Score=33.52 Aligned_cols=172 Identities=10% Similarity=0.092 Sum_probs=78.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+++.++.|+.+ ..+.+||.....-..+.....+ . .+++.. ++++++.++.+ ..+.+||.....
T Consensus 396 dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~-v-~~~~~s~d~~~l~~~~~d---------~~v~~w~~~~~~ 459 (577)
T 2ymu_A 396 DGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSS-V-WGVAFSPDDQTIASASDD---------KTVKLWNRNGQL 459 (577)
T ss_dssp TSSCEEEEETT-----SEEEEECTTCCEEEEEECCSSC-E-EEEEECTTSSEEEEEETT---------SEEEEEETTSCE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCCC-e-EEEEECCCCCEEEEEcCC---------CEEEEEECCCCE
Confidence 55555666543 4577787543322222211111 1 112222 56666666642 568888876544
Q ss_pred eEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcc
Q 011957 260 WSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVR 338 (474)
Q Consensus 260 W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~ 338 (474)
-..+.....+. .+++ .-++++.+.++.++ ...+||.....-..+.. .. ..
T Consensus 460 ~~~~~~~~~~v-----------------~~~~~spd~~~las~~~d~-------~i~iw~~~~~~~~~~~~-h~----~~ 510 (577)
T 2ymu_A 460 LQTLTGHSSSV-----------------RGVAFSPDGQTIASASDDK-------TVKLWNRNGQLLQTLTG-HS----SS 510 (577)
T ss_dssp EEEEECCSSCE-----------------EEEEECTTSCEEEEEETTS-------EEEEEETTSCEEEEEEC-CS----SC
T ss_pred EEEEcCCCCCE-----------------EEEEEcCCCCEEEEEeCCC-------EEEEEcCCCCEEEEEeC-CC----CC
Confidence 44333211111 2222 23667666665442 23567754332222221 10 00
Q ss_pred ccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecC
Q 011957 339 QAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITND 410 (474)
Q Consensus 339 ~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~ 410 (474)
. ...+..-++++++.|+. .+.|..||.....-..+.+. ...........+++.++.||.
T Consensus 511 v--~~l~~s~dg~~l~s~~~----dg~v~lwd~~~~~~~~~~~h-------~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 511 V--RGVAFSPDGQTIASASD----DKTVKLWNRNGQLLQTLTGH-------SSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp E--EEEEECTTSSCEEEEET----TSEEEEECTTSCEEEEEECC-------SSCEEEEEECTTSSCEEEEET
T ss_pred E--EEEEEcCCCCEEEEEEC----cCEEEEEeCCCCEEEEEcCC-------CCCEEEEEEcCCCCEEEEEeC
Confidence 0 11123346777777763 35788899765544443210 111111222446777777774
No 227
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=79.95 E-value=35 Score=30.92 Aligned_cols=94 Identities=9% Similarity=-0.001 Sum_probs=45.8
Q ss_pred ceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEE
Q 011957 248 QSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 248 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~ 326 (474)
..+.+||..+.+-...-.-. .... .+++. -++++++.|+.++ ...+||..+.+-..
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h--~~~v--------------~~~~~s~~~~~l~s~s~Dg-------~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGH--TGYL--------------NTVTVSPDGSLCASGGKDG-------QAMLWDLNEGKHLY 251 (340)
T ss_dssp SCEEEEETTTTEEEEEECCC--SSCE--------------EEEEECTTSSEEEEEETTC-------EEEEEETTTTEEEE
T ss_pred CEEEEEECCCCceeeEecCC--CCcE--------------EEEEECCCCCEEEEEeCCC-------eEEEEEeccCceee
Confidence 46888999876544321111 1110 22222 3567777676553 23677876654322
Q ss_pred cCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCce
Q 011957 327 MPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
.-. .. . ....++...+..++.++. .+.|..||.++..-
T Consensus 252 ~~~-~~----~---~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 252 TLD-GG----D---IINALCFSPNRYWLCAAT----GPSIKIWDLEGKII 289 (340)
T ss_dssp EEE-CS----S---CEEEEEECSSSSEEEEEE----TTEEEEEETTTTEE
T ss_pred eec-CC----c---eEEeeecCCCCceeeccC----CCEEEEEECCCCeE
Confidence 111 00 0 111133334444555542 35788899887643
No 228
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=79.29 E-value=15 Score=38.21 Aligned_cols=151 Identities=11% Similarity=-0.013 Sum_probs=76.6
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc---eEEccCCCccccc
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL---WSEILSMPFSKAQ 272 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~---W~~~~~~p~~r~~ 272 (474)
.++++++|..+..++.+..-..... ..+..++.+|+....+ .....+.++|..+.. |+.+-+-.....-
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~g~l~~~s~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAKY--EVHAWKDRFYVLTDEG------APRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCCE--EEEEETTEEEEEECTT------CTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred ceEEEEEcCCCCceEEeecCCCceE--EEEecCCcEEEEECCC------CCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 5688888887778887754322222 2223566665553311 124678999987754 8876432111110
Q ss_pred cccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEE
Q 011957 273 VLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGEL 352 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~l 352 (474)
..++..++++++....++. ...+.+|+..+.-+.+..+. .....+. ...-++..
T Consensus 323 ---------------~~~~~~~~~lv~~~~~dg~-----~~l~~~~~~g~~~~~l~~~~----~~~v~~~--~~s~d~~~ 376 (695)
T 2bkl_A 323 ---------------LSVSIVGGHLSLEYLKDAT-----SEVRVATLKGKPVRTVQLPG----VGAASNL--MGLEDLDD 376 (695)
T ss_dssp ---------------EEEEEETTEEEEEEEETTE-----EEEEEEETTCCEEEECCCSS----SSEECCC--BSCTTCSE
T ss_pred ---------------EEEEEECCEEEEEEEECCE-----EEEEEEeCCCCeeEEecCCC----CeEEEEe--ecCCCCCE
Confidence 2334448888775543322 11256676544344443210 0011110 11123433
Q ss_pred EEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 353 YALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 353 yv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
+++...+......++.||..+++.+.+.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 3333222223458999999998877764
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=78.90 E-value=40 Score=31.02 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=40.1
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCC--CcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEe
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSV--GRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
.-+|.+|+... ..+++||+.+.+.+.+...+. +........+ ++++|+.. .... .......+++||
T Consensus 98 ~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~--~~~~~~~l~~~~ 167 (326)
T 2ghs_A 98 ISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGT-MGRK--AETGAGSIYHVA 167 (326)
T ss_dssp EETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEE-EETT--CCTTCEEEEEEE
T ss_pred eCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEe-CCCc--CCCCceEEEEEe
Confidence 34788887641 359999999998876644321 1112222223 57787643 2211 111235788888
Q ss_pred CCCCceEEc
Q 011957 255 PRTGLWSEI 263 (474)
Q Consensus 255 ~~t~~W~~~ 263 (474)
+++.+.+
T Consensus 168 --~g~~~~~ 174 (326)
T 2ghs_A 168 --KGKVTKL 174 (326)
T ss_dssp --TTEEEEE
T ss_pred --CCcEEEe
Confidence 4555544
No 230
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=78.81 E-value=41 Score=31.10 Aligned_cols=168 Identities=17% Similarity=0.103 Sum_probs=92.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc---eeecCCCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA---WSEVSSMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
++.||+.--. ...++++++.... +.....+..| .++++ .+++||+.-.. ...++++|+
T Consensus 46 ~~~lyw~D~~-----~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~---------~~~I~~~~~ 108 (318)
T 3sov_A 46 HGLIYWSDVS-----EEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSE---------TNRIEVSNL 108 (318)
T ss_dssp GTEEEEEETT-----TTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETT---------TTEEEEEET
T ss_pred CCEEEEEECC-----CCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECC---------CCEEEEEEC
Confidence 5889988432 3578899987653 2211222222 22333 37899997542 257889998
Q ss_pred CCCceEEc--cCCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEc-CCC
Q 011957 256 RTGLWSEI--LSMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEM-PVG 330 (474)
Q Consensus 256 ~t~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~-~~~ 330 (474)
....=+.+ ..+..| .++++ .++.||+.--... -..+++++....=+.+ ...
T Consensus 109 dG~~~~~l~~~~~~~P------------------~giavdp~~g~ly~td~~~~------~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 109 DGSLRKVLFWQELDQP------------------RAIALDPSSGFMYWTDWGEV------PKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp TSCSCEEEECSSCSSE------------------EEEEEEGGGTEEEEEECSSS------CEEEEEETTSCSCEEEECSS
T ss_pred CCCcEEEEEeCCCCCc------------------cEEEEeCCCCEEEEEecCCC------CEEEEEEcCCCCeEEEEECC
Confidence 76543333 223323 23333 3688998541100 2237777764332332 221
Q ss_pred CCCCCCccccCcceEEE--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEe
Q 011957 331 MGEGWPVRQAGTKLSIT--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVIT 408 (474)
Q Consensus 331 ~~~~~p~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~G 408 (474)
+. +|. + +++ .+++||+... ....|+++|++...-+.+.. . ......++++.++.||+.-
T Consensus 165 l~--~Pn---g---lavd~~~~~lY~aD~----~~~~I~~~d~dG~~~~~~~~----~---~~~~P~glav~~~~lywtd 225 (318)
T 3sov_A 165 IY--WPN---G---LTLDYEEQKLYWADA----KLNFIHKSNLDGTNRQAVVK----G---SLPHPFALTLFEDILYWTD 225 (318)
T ss_dssp CS--CEE---E---EEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEC----S---CCSCEEEEEEETTEEEEEE
T ss_pred CC--Ccc---E---EEEeccCCEEEEEEC----CCCEEEEEcCCCCceEEEec----C---CCCCceEEEEeCCEEEEEe
Confidence 11 121 1 333 3789999964 34689999998654444421 1 1122467888899999874
No 231
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=78.70 E-value=49 Score=31.88 Aligned_cols=108 Identities=7% Similarity=-0.029 Sum_probs=54.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee--cCCCCCCcce-eeE-EEEC---CEEEEEeceecCCCCCccCceEEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE--VSSMSVGRAY-SKI-GILN---NKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~--~~~~p~~r~~-~~~-~~~~---~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
++..++.|+. ...++++|..+..-.. +..+...... .++ ..-+ +++++.|+.+ ..+.+|
T Consensus 160 ~~~~l~~~~~-----~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------~~i~vw 225 (450)
T 2vdu_B 160 DDTTVIIADK-----FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---------EHIKIS 225 (450)
T ss_dssp TSSEEEEEET-----TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---------SCEEEE
T ss_pred CCCEEEEEeC-----CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---------CcEEEE
Confidence 4555555543 3467888877655332 1111111111 122 2235 7777777743 578889
Q ss_pred eCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCce
Q 011957 254 DPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW 324 (474)
Q Consensus 254 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W 324 (474)
|..+..-...- +....... .+++..++++++.|+.++ ...+||..+++-
T Consensus 226 d~~~~~~~~~~-~~~h~~~v--------------~~~~~sd~~~l~s~~~d~-------~v~vwd~~~~~~ 274 (450)
T 2vdu_B 226 HYPQCFIVDKW-LFGHKHFV--------------SSICCGKDYLLLSAGGDD-------KIFAWDWKTGKN 274 (450)
T ss_dssp EESCTTCEEEE-CCCCSSCE--------------EEEEECSTTEEEEEESSS-------EEEEEETTTCCE
T ss_pred ECCCCceeeee-ecCCCCce--------------EEEEECCCCEEEEEeCCC-------eEEEEECCCCcE
Confidence 98776533210 00001110 222222777777776553 236788887764
No 232
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.16 E-value=48 Score=31.48 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=83.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCC---CC--------------CcceeeEEEE---CCEEEEEeceecC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSM---SV--------------GRAYSKIGIL---NNKLYAVGGVTRG 240 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---p~--------------~r~~~~~~~~---~~~lyv~GG~~~~ 240 (474)
.+.||+.+. ..-+++.+-...+|+.+... |. ....+.+++. .+.||+....
T Consensus 128 ~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~--- 198 (394)
T 3b7f_A 128 PGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS--- 198 (394)
T ss_dssp TTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET---
T ss_pred CCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC---
Confidence 567887542 24578888788899987532 21 1112233332 2578875431
Q ss_pred CCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe---CCEEEEeccCCCCcceeccceEEE
Q 011957 241 PGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY---RGRLFVPQSLYFWPFFVDVGGEVY 317 (474)
Q Consensus 241 ~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~iyv~gG~~~~~~~~~~gg~~y 317 (474)
..+++.+-...+|+.+..-..... ++... .......+.++.. .+.||+... -+..++
T Consensus 199 -------ggl~~s~DgG~tW~~~~~~~~~~~--~p~~~--~~~g~~~~~i~~~~~~~~~l~vg~~---------~gl~~s 258 (394)
T 3b7f_A 199 -------GGVFESTDAGTDWKPLNRGCAANF--LPDPN--VEFGHDPHCVVQHPAAPDILYQQNH---------CGIYRM 258 (394)
T ss_dssp -------BEEEEESSTTSSCEECCTTCCCTT--SSSSS--SSSCBCEEEEEECSSSTTEEEEEET---------TEEEEE
T ss_pred -------CCEEEECCCCCCceECCCCccccc--cCCCc--cccCcceeEEEECCCCCCEEEEEcC---------CeEEEe
Confidence 246777777789998753111000 00000 0000001333433 267887432 334677
Q ss_pred cCCCCceEEcCCCCCCCCCccccCcceEEE---ECCEEEEEcCCCC--------CCCceEEEEECCCCceEEeccCCCC
Q 011957 318 DPDVNSWVEMPVGMGEGWPVRQAGTKLSIT---VEGELYALDPSGA--------LDSAKIKVYDYHDDTWKVVVGDVPL 385 (474)
Q Consensus 318 d~~t~~W~~~~~~~~~~~p~~~~~~~~~~~---~~~~lyv~GG~~~--------~~~~~v~~yd~~~~~W~~v~~~~p~ 385 (474)
+-...+|+.+...+.. .....+.. +++ -.+.||+...... .....++.-.-...+|+.+...+|.
T Consensus 259 ~D~G~tW~~~~~~l~~--~~~~~~~~-i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 259 DRREGVWKRIGDAMPR--EVGDIGFP-IVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp ETTTTEEECGGGGSCT--TTCSCEEE-EEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred CCCCCcceECCCCCCC--CCccceEE-EEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 7778899998642211 00011111 233 2467888632110 0112344333334689998644443
No 233
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=78.12 E-value=67 Score=33.20 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=33.4
Q ss_pred eEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 314 GEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 314 g~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
...+|+.+++...+.......+-. .. ...+..-++++++.+..++ ...++.+|.+.. ...+
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~-~~-~~~~~spdg~~~~~~~~~g--~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVP-LH-NSLRFLDDGSILWSSERTG--FQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCC-CC-SCCEECTTSCEEEEECTTS--SCEEEEECSSSC-EEES
T ss_pred EEEEECCCCceEEEEEcCCCCcCC-cC-CceEECCCCeEEEEecCCC--ccEEEEEcCCCC-eeee
Confidence 378899988877654311110000 00 1113455777766665432 358899987766 5554
No 234
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=77.57 E-value=70 Score=33.12 Aligned_cols=174 Identities=12% Similarity=-0.032 Sum_probs=81.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCC-------CCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGP-------GGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~-------~~~~~~~~~~~ 252 (474)
+|+..+++..........++++|..+++...... +... ....+.. +++.++++...... ........+++
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence 5554444332222223589999999998765321 1111 1122332 44444444332110 00122356888
Q ss_pred EeCCCCceE--EccCCCc-cccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCC------C-
Q 011957 253 FDPRTGLWS--EILSMPF-SKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDV------N- 322 (474)
Q Consensus 253 yd~~t~~W~--~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t------~- 322 (474)
++..+++-+ .+...+. +... ......-+|+..++........ +...+.+|..+ +
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~--------------~~~~~SpDg~~l~~~~~~~~~~--~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWM--------------GGAELSDDGRYVLLSIREGCDP--VNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCE--------------EEEEECTTSCEEEEEEECSSSS--CCEEEEEEGGGSSSSSCSS
T ss_pred EECCCCcccceEEeccCCCCeEE--------------EEEEEcCCCCEEEEEEEccCCC--ccEEEEEECcccccccCCc
Confidence 898877632 2211111 1111 0112233555433332211110 02236677765 3
Q ss_pred -ceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC---ceEEec
Q 011957 323 -SWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD---TWKVVV 380 (474)
Q Consensus 323 -~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~---~W~~v~ 380 (474)
.+..+..... .. .......++.||+.+..+. ....|+.+|+++. .|+.+.
T Consensus 277 ~~~~~l~~~~~-----~~--~~~~s~dg~~l~~~s~~~~-~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 277 LKWVKLIDNFE-----GE--YDYVTNEGTVFTFKTNRHS-PNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp CCCEEEECSSS-----SC--EEEEEEETTEEEEEECTTC-TTCEEEEEETTSCCGGGCEEEE
T ss_pred cceEEeeCCCC-----cE--EEEEeccCCEEEEEECCCC-CCCEEEEEeCCCCCcccceecc
Confidence 5777764211 11 1113345677888865432 2458999999875 588874
No 235
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=77.23 E-value=15 Score=31.56 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=36.7
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCce---eecC----CCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEE
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAW---SEVS----SMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAE 251 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W---~~~~----~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~ 251 (474)
.++++|+|-| +.+|+||..+... +.+. .+|..+-..+... .++++|.+-| +..+
T Consensus 60 ~~g~~yfFkg-------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-----------~~yw 121 (196)
T 3c7x_A 60 KDGKFVFFKG-------DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-----------NKYY 121 (196)
T ss_dssp TTSCEEEEET-------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-----------TEEE
T ss_pred CCCcEEEecC-------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-----------CEEE
Confidence 5788999976 5789998543211 1122 2332222222221 1589999987 4578
Q ss_pred EEeCCCCc
Q 011957 252 VFDPRTGL 259 (474)
Q Consensus 252 ~yd~~t~~ 259 (474)
+||..+++
T Consensus 122 ~yd~~~~~ 129 (196)
T 3c7x_A 122 RFNEELRA 129 (196)
T ss_dssp EEETTTTE
T ss_pred EEeCCccc
Confidence 99987754
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=76.57 E-value=62 Score=33.55 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=79.0
Q ss_pred cceEEEEeCCCC--ceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC---ceEEccCCCccc
Q 011957 196 MRNVWRYDPVLN--AWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG---LWSEILSMPFSK 270 (474)
Q Consensus 196 ~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~r 270 (474)
.++++++|..+. .|+.+..-...... .....+++||+....+ .....+..+|+.+. .|+.+-+-. .
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~--~ 328 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRD------APNRRLVTVDAANPGPAHWRDLIPER--Q 328 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTT------CTTCEEEEEETTSCCGGGCEEEECCC--S
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCC------CCCCEEEEEeCCCCCccccEEEecCC--C
Confidence 368999998776 67776543222222 2345588999886532 12457888998763 488664322 1
Q ss_pred cccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEEC-
Q 011957 271 AQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVE- 349 (474)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~- 349 (474)
.. ......++.|++..-.++. ....++|...+..+.+..+. .....+. ....+
T Consensus 329 ~~---------------~~~s~~g~~lv~~~~~~g~-----~~l~~~d~~g~~~~~l~~p~----~~~~~~~--~~~~d~ 382 (693)
T 3iuj_A 329 QV---------------LTVHSGSGYLFAEYMVDAT-----ARVEQFDYEGKRVREVALPG----LGSVSGF--NGKHDD 382 (693)
T ss_dssp SC---------------EEEEEETTEEEEEEEETTE-----EEEEEECTTSCEEEEECCSS----SSEEEEC--CCCTTC
T ss_pred CE---------------EEEEEECCEEEEEEEECCe-----eEEEEEECCCCeeEEeecCC----CceEEee--ecCCCC
Confidence 11 2223345566553221111 11267888766656654311 0010000 01112
Q ss_pred CEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 350 GELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 350 ~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
+.|++.. .+......++.||+++++.+.+.
T Consensus 383 ~~l~~~~-ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 383 PALYFGF-ENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp SCEEEEE-ECSSSCCEEEEECTTTCCEEEEE
T ss_pred CEEEEEe-cCCCCCCEEEEEECCCCeEEEEE
Confidence 3444442 22223468999999999888775
No 237
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=76.38 E-value=46 Score=30.33 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=16.6
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
+++..+.|+.+ ..+.+||..+++
T Consensus 76 dg~~l~s~s~D---------~~v~~wd~~~~~ 98 (319)
T 3frx_A 76 DGAYALSASWD---------KTLRLWDVATGE 98 (319)
T ss_dssp TSSEEEEEETT---------SEEEEEETTTTE
T ss_pred CCCEEEEEeCC---------CEEEEEECCCCC
Confidence 56666666643 678999998875
No 238
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=76.31 E-value=51 Score=30.89 Aligned_cols=153 Identities=15% Similarity=0.232 Sum_probs=73.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
++.+++.|+.+ ..+.+||..... -..+.. .......+.+ +++.++.|+.+ ..+.+||..
T Consensus 217 ~~~~l~sgs~D-----~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D---------~~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCD-----TTVRLWDLRITSRAVRTYHG---HEGDINSVKFFPDGQRFGTGSDD---------GTCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETT-----SCEEEEETTTTCCCCEEECC---CSSCCCEEEECTTSSEEEEECSS---------SCEEEEETT
T ss_pred CCCEEEEEECC-----CeEEEEECCCCCcceEEECC---cCCCeEEEEEecCCCeEEEEcCC---------CeEEEEECC
Confidence 56677777654 357788876321 111111 0111112222 56777777753 578899998
Q ss_pred CCceEEccCCCccc-cccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCC
Q 011957 257 TGLWSEILSMPFSK-AQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGE 333 (474)
Q Consensus 257 t~~W~~~~~~p~~r-~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~ 333 (474)
++.-...-.....+ .... ....+++ ..++++.+.|+.++ ...+||..+.+-.. +.. ...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~g~~dg-------~i~vwd~~~~~~~~~~~~-~~~ 341 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNEL----------PIVTSVAFSISGRLLFAGYSNG-------DCYVWDTLLAEMVLNLGT-LQN 341 (380)
T ss_dssp TTEEEEEECCCCSSSCCSS----------CSCSEEEECSSSSEEEEECTTS-------CEEEEETTTCCEEEEECC-SCS
T ss_pred CCcEEEEeccccccccccc----------CceEEEEECCCCCEEEEEECCC-------CEEEEECCCCceEEEEec-ccC
Confidence 87543321111111 0000 0002222 34677777666543 23788887765432 211 110
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
+ .... -...+..-++.+++.|+.+ +.|..||....
T Consensus 342 ~-h~~~-v~~l~~s~dg~~l~sgs~D----~~i~iW~~~~~ 376 (380)
T 3iz6_a 342 S-HEGR-ISCLGLSSDGSALCTGSWD----KNLKIWAFSGH 376 (380)
T ss_dssp S-CCCC-CCEEEECSSSSEEEEECTT----SCEEEEECCSS
T ss_pred C-CCCc-eEEEEECCCCCEEEEeeCC----CCEEEEecCCC
Confidence 0 0011 1111334467788888743 46777776543
No 239
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=76.08 E-value=45 Score=30.17 Aligned_cols=53 Identities=8% Similarity=0.042 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCC
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDAN 412 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~ 412 (474)
++++++.|+. .+.|..||..+.+-... ++.. +...-..++ .++++++.|+.++
T Consensus 262 ~~~~l~~~~~----dg~i~vwd~~~~~~~~~---~~~~---h~~~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 262 RHKFLYTAGS----DGIISCWNLQTRKKIKN---FAKF---NEDSVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp TTCCEEEEET----TSCEEEEETTTTEEEEE---CCCC---SSSEEEEEE-ECSSEEEEEEECT
T ss_pred CCCEEEEecC----CceEEEEcCccHhHhhh---hhcc---cCCCceEec-CCCCeEEEEecCC
Confidence 5666666663 35799999987754332 1110 011123344 7888888887433
No 240
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=76.05 E-value=13 Score=32.75 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=36.7
Q ss_pred EeCCEEEEEcCcCCCcccceEEEEe--CCC-------------CceeecCCCC-CCcceeeEEE-ECCEEEEEeceecCC
Q 011957 179 AVDGCLYVLGGFSRALAMRNVWRYD--PVL-------------NAWSEVSSMS-VGRAYSKIGI-LNNKLYAVGGVTRGP 241 (474)
Q Consensus 179 ~~~~~lyv~GG~~~~~~~~~v~~yd--~~t-------------~~W~~~~~~p-~~r~~~~~~~-~~~~lyv~GG~~~~~ 241 (474)
..++++|+|-| +.+|+|+ +.+ ..|.-+|.-. ......+... .++++|+|-|
T Consensus 70 ~~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG----- 137 (227)
T 3lp9_A 70 TENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG----- 137 (227)
T ss_dssp CSTTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET-----
T ss_pred CCCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC-----
Confidence 46899999976 5788888 321 1132222110 1122222221 2589999988
Q ss_pred CCCccCceEEEEeCCCCc
Q 011957 242 GGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 242 ~~~~~~~~~~~yd~~t~~ 259 (474)
+..++||..+++
T Consensus 138 ------~~yw~~d~~~~~ 149 (227)
T 3lp9_A 138 ------DQYARIDYGSNS 149 (227)
T ss_dssp ------TEEEEEETTTTE
T ss_pred ------CEEEEEeCCCcc
Confidence 468899987653
No 241
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=76.04 E-value=50 Score=30.67 Aligned_cols=161 Identities=12% Similarity=-0.092 Sum_probs=73.7
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEE--ECCEEEEEeceecCC----C---------CCccCceEEEEeCCCCceE
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGI--LNNKLYAVGGVTRGP----G---------GLTPLQSAEVFDPRTGLWS 261 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~----~---------~~~~~~~~~~yd~~t~~W~ 261 (474)
..++++|+.+.+-+.+...+.......... -++++++.--..... . .......++++|+.+++-+
T Consensus 102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 478999999887666554444332222222 234433321100000 0 0112367999999988766
Q ss_pred EccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCcccc
Q 011957 262 EILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQA 340 (474)
Q Consensus 262 ~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~ 340 (474)
.+..-+... . .....- +|+..++........ .....+.+|..+...+.+..... ....
T Consensus 182 ~l~~~~~~~-~---------------~~~~sp~dg~~l~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~----~~~~ 240 (388)
T 3pe7_A 182 VILQENQWL-G---------------HPIYRPYDDSTVAFCHEGPHDL-VDARMWLINEDGTNMRKVKTHAE----GESC 240 (388)
T ss_dssp EEEEESSCE-E---------------EEEEETTEEEEEEEEECSCTTT-SSCSEEEEETTSCCCEESCCCCT----TEEE
T ss_pred EeecCCccc-c---------------ccEECCCCCCEEEEEEecCCCC-CcceEEEEeCCCCceEEeeeCCC----Cccc
Confidence 554221111 1 122233 454333222111100 00233778888777776654110 0111
Q ss_pred CcceEEEECCE-EEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 341 GTKLSITVEGE-LYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 341 ~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
... ...-+|+ |+.+..........|+.+|+++.+-+.+
T Consensus 241 ~~~-~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 241 THE-FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp EEE-EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred ccc-eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 111 2333555 5444322211123599999999876665
No 242
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=75.96 E-value=24 Score=36.03 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=66.9
Q ss_pred eEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEe
Q 011957 223 KIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVP 300 (474)
Q Consensus 223 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 300 (474)
+.++.+++||+.... ..+..+|.++++ |+.-...+.....+. + ....+.++.+++||+.
T Consensus 63 ~P~v~~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~------~---~~~~g~a~~~~~v~~~ 123 (582)
T 1flg_A 63 QAIVSDGVIYVTASY----------SRLFALDAKTGKRLWTYNHRLPDDIRPCC------D---VVNRGAAIYGDKVFFG 123 (582)
T ss_dssp CCEEETTEEEEEETT----------TEEEEEESSSCCEEEEEECCCCTTCCCSS------C---SCCCCCEEETTEEEEE
T ss_pred ccEEECCEEEEEcCC----------CCEEEEECCCCcEEEEEcCCCCccccccc------c---cCCCccEEECCEEEEE
Confidence 346689999998652 248899998765 886543322110000 0 0002345678999984
Q ss_pred ccCCCCcceeccceEEEcCCCCc--eEEcCCCCCCCCCccccCcceEEEECC------EEEEEcCCCC--CCCceEEEEE
Q 011957 301 QSLYFWPFFVDVGGEVYDPDVNS--WVEMPVGMGEGWPVRQAGTKLSITVEG------ELYALDPSGA--LDSAKIKVYD 370 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t~~--W~~~~~~~~~~~p~~~~~~~~~~~~~~------~lyv~GG~~~--~~~~~v~~yd 370 (474)
.. + -...++|.++++ |+.-..... .......+ -++.++ .||+ |.... .....++.||
T Consensus 124 t~-d-------g~l~AlD~~TG~~~W~~~~~~~~---~~~~~~~s-P~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 124 TL-D-------ASVVALNKNTGKVVWKKKFADHG---AGYTMTGA-PTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARD 190 (582)
T ss_dssp ET-T-------TEEEEEESSSCCEEEEEECSCGG---GTCBCCSC-CEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEEC
T ss_pred eC-C-------CEEEEEECCCCCEEeeecCCCCC---cCcccccC-CEEeCCCcCCcEEEEE-eccccccCCCCEEEEEE
Confidence 31 1 223789998875 986432110 00011111 244555 5655 33211 1245899999
Q ss_pred CCCC--ceEE
Q 011957 371 YHDD--TWKV 378 (474)
Q Consensus 371 ~~~~--~W~~ 378 (474)
+++. .|+.
T Consensus 191 ~~tG~~~W~~ 200 (582)
T 1flg_A 191 PDTGEEIWMR 200 (582)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEeec
Confidence 9876 4865
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.86 E-value=46 Score=30.10 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc--eeecCCCCCCcceeeEEE-ECCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA--WSEVSSMSVGRAYSKIGI-LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.||+... ...++.||+. .+ |+.-.+ ... ..+.+. -++.||+.. ..+.+||...
T Consensus 147 ~g~l~vgt~------~~~l~~~d~~-g~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t------------~~l~~~d~~g 204 (330)
T 3hxj_A 147 DGTIYVGSN------DNYLYAINPD-GTEKWRFKTN--DAI-TSAASIGKDGTIYFGS------------DKVYAINPDG 204 (330)
T ss_dssp TSCEEEECT------TSEEEEECTT-SCEEEEEECS--SCC-CSCCEECTTCCEEEES------------SSEEEECTTS
T ss_pred CCEEEEEcC------CCEEEEECCC-CCEeEEEecC--CCc-eeeeEEcCCCEEEEEe------------CEEEEECCCC
Confidence 677877431 2468889987 43 654321 111 122233 367777754 2467888432
Q ss_pred -CceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCc-eEEcCCCCCCC
Q 011957 258 -GLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNS-WVEMPVGMGEG 334 (474)
Q Consensus 258 -~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~-W~~~~~~~~~~ 334 (474)
..|+..... ... .+.+.. +|.||+... . -+..+||+.... |+.... .
T Consensus 205 ~~~~~~~~~~--~~~----------------~~~~~~~~g~l~v~t~-~-------~gl~~~~~~g~~~~~~~~~-~--- 254 (330)
T 3hxj_A 205 TEKWNFYAGY--WTV----------------TRPAISEDGTIYVTSL-D-------GHLYAINPDGTEKWRFKTG-K--- 254 (330)
T ss_dssp CEEEEECCSS--CCC----------------SCCEECTTSCEEEEET-T-------TEEEEECTTSCEEEEEECS-S---
T ss_pred cEEEEEccCC--cce----------------eceEECCCCeEEEEcC-C-------CeEEEECCCCCEeEEeeCC-C---
Confidence 246644221 111 222333 568888431 1 234778875444 554321 1
Q ss_pred CCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCC-ceEE
Q 011957 335 WPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDD-TWKV 378 (474)
Q Consensus 335 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~-~W~~ 378 (474)
...... +..-++.||+... .+.+++||++.. .|..
T Consensus 255 ---~~~~~~-~~~~~g~l~v~t~-----~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 255 ---RIESSP-VIGNTDTIYFGSY-----DGHLYAINPDGTEKWNF 290 (330)
T ss_dssp ---CCCSCC-EECTTSCEEEECT-----TCEEEEECTTSCEEEEE
T ss_pred ---Cccccc-eEcCCCeEEEecC-----CCCEEEECCCCcEEEEE
Confidence 111111 3333788888642 247899998544 4654
No 244
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=75.71 E-value=14 Score=36.44 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEecc-CCC--CCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVG-DVP--LPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~-~~p--~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
++++|+|-| +..|+||..+++-..--+ .+- .+..+ ... -+++..++++|+|-|
T Consensus 367 ~~k~yfFkG------~~yw~yd~~~~~~~~gYPk~I~~~fpgip-~~i-DAA~~~~g~~YFFkg 422 (450)
T 1su3_A 367 TGKTYFFVA------NKYWRYDEYKRSMDPGYPKMIAHDFPGIG-HKV-DAVFMKDGFFYFFHG 422 (450)
T ss_dssp TTEEEEEET------TEEEEEETTTTEECSSCSEEHHHHSTTSC-SCC-SEEEEETTEEEEEET
T ss_pred CCeEEEEeC------CEEEEEeCCCccccCCCCcchhhcCCCCC-CCc-cEEEEcCCeEEEEeC
Confidence 589999976 589999987643211000 000 11122 122 344457899999988
No 245
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=75.06 E-value=82 Score=33.43 Aligned_cols=160 Identities=15% Similarity=0.106 Sum_probs=81.6
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC----ceE-Ecc-CCCc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG----LWS-EIL-SMPF 268 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~----~W~-~~~-~~p~ 268 (474)
..+.++++....+..+..- .+.-.++++. +++||+.-.. ...|+++++... ..+ .+. .+..
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~---------~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp SSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT---------TTEEEEEEC--------CEEEECSSCSC
T ss_pred cceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc---------ceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 4566677766666554321 1222333443 6899997542 256778887642 222 222 2222
Q ss_pred cccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEE
Q 011957 269 SKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI 346 (474)
Q Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~ 346 (474)
| .++++ .+++||+.-... -.++++|+....-+.+..... ..++ + ++
T Consensus 473 P------------------~GLAvD~~~~~LY~tD~~~-------~~I~v~~ldG~~~~~l~~~~l---~~P~-g---Ia 520 (791)
T 3m0c_C 473 P------------------DGLAVDWIHSNIYWTDSVL-------GTVSVADTKGVKRKTLFRENG---SKPR-A---IV 520 (791)
T ss_dssp C------------------CEEEEETTTTEEEEEETTT-------TEEEEEETTSSSEEEEEECTT---CCEE-E---EE
T ss_pred c------------------ceeeeeecCCcEEEEecCC-------CeEEEEeCCCCeEEEEEeCCC---CCcc-e---EE
Confidence 2 33343 467999964322 224788887666555432111 1111 1 34
Q ss_pred E--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe--eCCEEEEEec
Q 011957 347 T--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG--LLGKLHVITN 409 (474)
Q Consensus 347 ~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG 409 (474)
+ .++.||+..-. ....|++++++...=+.+.. ..+ ....++++ .+++||+.-.
T Consensus 521 VDp~~g~LYwtD~g---~~~~I~~~~~dG~~~~~lv~----~~l---~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 521 VDPVHGFMYWTDWG---TPAKIKKGGLNGVDIYSLVT----ENI---QWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp EETTTTEEEEEECS---SSCEEEEEETTSCCEEEEEC----SSC---SCEEEEEEETTTTEEEEEET
T ss_pred EecCCCCEEEecCC---CCCeEEEEecCCCceEEEEe----CCC---CCceEEEEecCCCeEEEEeC
Confidence 4 35899998621 12579999988765444421 011 11234443 4678888754
No 246
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=74.58 E-value=37 Score=30.59 Aligned_cols=75 Identities=11% Similarity=-0.041 Sum_probs=38.4
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC----cceeeEEEE--CCEEEEEeceecCCCCCc--cCceEEEE
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG----RAYSKIGIL--NNKLYAVGGVTRGPGGLT--PLQSAEVF 253 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~--~~~~~~~y 253 (474)
..+|+.+.. ...++++|+.+.+-...-+.+.+ ..-..++.. +..||+............ ....+.+|
T Consensus 46 ~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 46 RIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp SEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred CEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 367877643 35799999988774432111110 011223332 347777742210000000 13689999
Q ss_pred eCCCCceE
Q 011957 254 DPRTGLWS 261 (474)
Q Consensus 254 d~~t~~W~ 261 (474)
|+.+.+..
T Consensus 121 d~~~~~~~ 128 (337)
T 1pby_B 121 DAETLSRR 128 (337)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEE
Confidence 99887654
No 247
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=74.57 E-value=34 Score=31.19 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++..++.|+.+ ..+.+||..+++-.. +.. ......++.+ ++.+++.|+.+ ..+.+||...
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~D---------~~i~vwd~~~ 138 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFVG---HKSDVMSVDIDKKASMIISGSRD---------KTIKVWTIKG 138 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSCEEEEEETT---------SCEEEEETTS
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEcc---CCCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCC
Confidence 56666666654 468889988875321 211 1111112222 46667777653 5688888875
Q ss_pred Cce
Q 011957 258 GLW 260 (474)
Q Consensus 258 ~~W 260 (474)
..-
T Consensus 139 ~~~ 141 (319)
T 3frx_A 139 QCL 141 (319)
T ss_dssp CEE
T ss_pred CeE
Confidence 543
No 248
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=73.64 E-value=86 Score=32.23 Aligned_cols=148 Identities=9% Similarity=0.055 Sum_probs=71.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ +++.++.|+.+ ..+.+||....
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D---------~~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRD---------RTIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSC
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCC---------CEEEEEECCCC
Confidence 56666777654 4688889887653221 1000011112222 45666666643 56888887654
Q ss_pred ceEEccCCC-ccccccccchhhccccccceeeEEEe-CC--EEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCC
Q 011957 259 LWSEILSMP-FSKAQVLPTAFLADLLKPIATGMSSY-RG--RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEG 334 (474)
Q Consensus 259 ~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~~-~~--~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~ 334 (474)
.=..+.... ..+.. ..+++.. ++ .+.+.|+.++ ...+||..+.+-...-....
T Consensus 505 ~~~~~~~~~~~h~~~--------------v~~~~~~~~~~~~~l~s~s~d~-------~v~vwd~~~~~~~~~~~~h~-- 561 (694)
T 3dm0_A 505 CKYTISEGGEGHRDW--------------VSCVRFSPNTLQPTIVSASWDK-------TVKVWNLSNCKLRSTLAGHT-- 561 (694)
T ss_dssp EEEEECSSTTSCSSC--------------EEEEEECSCSSSCEEEEEETTS-------CEEEEETTTCCEEEEECCCS--
T ss_pred cceeeccCCCCCCCc--------------EEEEEEeCCCCcceEEEEeCCC-------eEEEEECCCCcEEEEEcCCC--
Confidence 322222111 11111 0222222 22 3455555443 23678887765433211010
Q ss_pred CCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 335 WPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 335 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
... ...+..-++++++.|+.+ +.|..||..+.+
T Consensus 562 ---~~v-~~v~~spdg~~l~sg~~D----g~i~iwd~~~~~ 594 (694)
T 3dm0_A 562 ---GYV-STVAVSPDGSLCASGGKD----GVVLLWDLAEGK 594 (694)
T ss_dssp ---SCE-EEEEECTTSSEEEEEETT----SBCEEEETTTTE
T ss_pred ---CCE-EEEEEeCCCCEEEEEeCC----CeEEEEECCCCc
Confidence 000 111233367777777743 578899998774
No 249
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=73.12 E-value=50 Score=29.29 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=16.3
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
+++ ++.|+. .+.|..||..+.+-..
T Consensus 236 ~~~-l~~~~~----dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 236 NGD-IVSCGE----DRTVRIWSKENGSLKQ 260 (313)
T ss_dssp TSC-EEEEET----TSEEEEECTTTCCEEE
T ss_pred CCC-EEEEec----CCEEEEEECCCCceeE
Confidence 444 445542 3689999998876544
No 250
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=71.25 E-value=61 Score=29.48 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=55.0
Q ss_pred CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCC
Q 011957 229 NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFW 306 (474)
Q Consensus 229 ~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~ 306 (474)
+.+++.|+.+ ..+.+||..+.+-... +...... ..++... ++.+++.|+.++
T Consensus 85 ~~~l~~~~~d---------g~i~v~d~~~~~~~~~--~~~~~~~--------------i~~~~~~~~~~~~l~s~~~dg- 138 (366)
T 3k26_A 85 HPLLAVAGSR---------GIIRIINPITMQCIKH--YVGHGNA--------------INELKFHPRDPNLLLSVSKDH- 138 (366)
T ss_dssp CEEEEEEETT---------CEEEEECTTTCCEEEE--EESCCSC--------------EEEEEECSSCTTEEEEEETTS-
T ss_pred CCEEEEecCC---------CEEEEEEchhceEeee--ecCCCCc--------------EEEEEECCCCCCEEEEEeCCC-
Confidence 5677777743 5789999887653221 1111111 0233332 567777666553
Q ss_pred cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEE-EECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 307 PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI-TVEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 307 ~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
...+||..+++-...-.... ........++ .-++..++.|+. .+.+..||..+.
T Consensus 139 ------~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~ 193 (366)
T 3k26_A 139 ------ALRLWNIQTDTLVAIFGGVE----GHRDEVLSADYDLLGEKIMSCGM----DHSLKLWRINSK 193 (366)
T ss_dssp ------CEEEEETTTTEEEEEECSTT----SCSSCEEEEEECTTSSEEEEEET----TSCEEEEESCSH
T ss_pred ------eEEEEEeecCeEEEEecccc----cccCceeEEEECCCCCEEEEecC----CCCEEEEECCCC
Confidence 23788888776443321000 0111111122 234666677664 357899998865
No 251
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=70.99 E-value=33 Score=30.66 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=34.5
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceE
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWS 261 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 261 (474)
+.+.++|..+++-.++-.+........++.+ +++.++.|+.+ ..+.+||.++++-.
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D---------g~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS---------AEVQLWDVQQQKRL 102 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT---------SEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC---------CcEEEeecCCceeE
Confidence 5688999998876554333222222222233 56777777753 57889999887643
No 252
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=70.68 E-value=77 Score=30.41 Aligned_cols=65 Identities=9% Similarity=-0.161 Sum_probs=38.0
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeec-CCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEV-SSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
+.+++.|+.+ ..+.+||..+.+.... ..-........+.. ++++++.|+.+ ..+.+||..+.+-
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d---------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD---------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS---------SEEEEEETTTCCE
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC---------CeEEEEECCCCcE
Confidence 7777777654 4688888877653321 11111111112222 67777777743 5789999988764
Q ss_pred E
Q 011957 261 S 261 (474)
Q Consensus 261 ~ 261 (474)
.
T Consensus 275 ~ 275 (450)
T 2vdu_B 275 L 275 (450)
T ss_dssp E
T ss_pred e
Confidence 4
No 253
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=70.23 E-value=75 Score=30.13 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=87.1
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccC--CCccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILS--MPFSKAQ 272 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~ 272 (474)
+.+.++|+.......+.+- ...-.+++.. +++||+.--. ...++++++.....+.+.. +..|
T Consensus 96 ~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~~---------~~~I~r~~~~g~~~~~~~~~~~~~p--- 161 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT---------LDRILRANLNGSNVEEVVSTGLESP--- 161 (386)
T ss_dssp SCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSCCEEEEECSSCSCC---
T ss_pred ccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeCC---------CCcEEEEecCCCCcEEEEeCCCCCc---
Confidence 5688888887766554321 1122334443 5899997432 3578999998877665532 2222
Q ss_pred cccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEE--
Q 011957 273 VLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV-- 348 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~-- 348 (474)
.++++ .++.||+.-... -..+++++....-+.+.. .. +..++ + +++.
T Consensus 162 ---------------~glavd~~~g~lY~~d~~~-------~~I~~~~~dg~~~~~l~~-~~--l~~P~-g---iavdp~ 212 (386)
T 3v65_B 162 ---------------GGLAVDWVHDKLYWTDSGT-------SRIEVANLDGAHRKVLLW-QS--LEKPR-A---IALHPM 212 (386)
T ss_dssp ---------------CCEEEETTTTEEEEEETTT-------TEEEECBTTSCSCEEEEC-SS--CSCEE-E---EEEETT
T ss_pred ---------------cEEEEEeCCCeEEEEcCCC-------CeEEEEeCCCCceEEeec-CC--CCCCc-E---EEEEcC
Confidence 23333 478999964322 123677776554333322 11 11111 1 3443
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe--eCCEEEEEec
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG--LLGKLHVITN 409 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG 409 (474)
++.||+..-.. ...|++++++...-+.+... .+ ....+++. .+++||+.-.
T Consensus 213 ~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~~----~~---~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 213 EGTIYWTDWGN---TPRIEASSMDGSGRRIIADT----HL---FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp TTEEEEEECSS---SCEEEEEETTSCSCEEEECS----SC---SCEEEEEEEGGGTEEEEEET
T ss_pred CCeEEEeccCC---CCEEEEEeCCCCCcEEEEEC----CC---CCeeeEEEeCCCCEEEEEEC
Confidence 68899985321 36899999886544443210 11 11234443 4778888754
No 254
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=70.15 E-value=62 Score=29.12 Aligned_cols=149 Identities=10% Similarity=0.066 Sum_probs=69.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
++.+++.|+.+ ..+..++.......................-.+..++.|+.+ ..+.+||.....-
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---------~~~~~~d~~~~~~ 162 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---------KTIKLWNTLGVCK 162 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCEE
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC---------CeEEEEEeCCCce
Confidence 55666666653 356677777665444322222222222222245555666542 4567788765432
Q ss_pred EEccCCCccccccccchhhccccccceeeEEE-e--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 261 SEILSMPFSKAQVLPTAFLADLLKPIATGMSS-Y--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 261 ~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
....... ..... ..... . .+.+++.++.++ ....||..+.+-...-.... .
T Consensus 163 ~~~~~~~-~~~~v--------------~~~~~~~~~~~~~~~s~~~d~-------~i~i~d~~~~~~~~~~~~h~----~ 216 (340)
T 4aow_A 163 YTVQDES-HSEWV--------------SCVRFSPNSSNPIIVSCGWDK-------LVKVWNLANCKLKTNHIGHT----G 216 (340)
T ss_dssp EEECSSS-CSSCE--------------EEEEECSCSSSCEEEEEETTS-------CEEEEETTTTEEEEEECCCS----S
T ss_pred EEEEecc-ccCcc--------------cceEEccCCCCcEEEEEcCCC-------EEEEEECCCCceeeEecCCC----C
Confidence 2221111 11110 11111 1 234555555442 23678887766443322111 0
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.. ...+..-++++++.|+. .+.+..||..+.+
T Consensus 217 ~v--~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 217 YL--NTVTVSPDGSLCASGGK----DGQAMLWDLNEGK 248 (340)
T ss_dssp CE--EEEEECTTSSEEEEEET----TCEEEEEETTTTE
T ss_pred cE--EEEEECCCCCEEEEEeC----CCeEEEEEeccCc
Confidence 11 11122335777777764 3578899987754
No 255
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.10 E-value=79 Score=30.28 Aligned_cols=152 Identities=10% Similarity=0.023 Sum_probs=80.3
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
-++.||+.... .+.+.++|+.+++-..+.... ...+ .+.. ++.||+..... ...++++|+.+
T Consensus 140 ~~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~--------~~~I~~~d~~~ 203 (409)
T 3hrp_A 140 GNNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEG--------THTVYVYMKAS 203 (409)
T ss_dssp STTEEEEEETT-----TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSST--------TCEEEEEEGGG
T ss_pred CCCCEEEEecC-----CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCC--------CceEEEEEcCC
Confidence 47889998642 357999999988765543221 1122 2222 45677765421 12788999875
Q ss_pred Cc-eEEccCCCc-cccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 258 GL-WSEILSMPF-SKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 258 ~~-W~~~~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
+. ...+..+.. ..... +++++. ++.||+... + -...+||+.+..-..+......
T Consensus 204 ~~~~~~~g~~~~~~~~~p--------------~~iav~p~~g~lyv~d~-~-------~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKI--------------GAVALDETEEWLYFVDS-N-------KNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp TTCEEEEEECCTTSCSCC--------------CBCEECTTSSEEEEECT-T-------CEEEEEETTTCCEEEEEECCCC
T ss_pred CceeEEeeeccchhcCCc--------------EEEEEeCCCCeEEEEEC-C-------CcEEEEECCCCCEEEEeccccc
Confidence 43 233311111 01110 333433 689999432 1 1247899988876554110000
Q ss_pred CCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 334 GWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
+.....-... +++. ++.||+... ..+.|++||++..
T Consensus 262 g~~~~~P~~~-ia~~p~~g~lyv~d~----~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 262 GSLGTNPGPY-LIYYFVDSNFYMSDQ----NLSSVYKITPDGE 299 (409)
T ss_dssp SCCCCSSCCE-EEEETTTTEEEEEET----TTTEEEEECTTCC
T ss_pred CCCCCCcccc-EEEeCCCCEEEEEeC----CCCEEEEEecCCC
Confidence 0000110002 4443 689999864 2458999998765
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=69.31 E-value=69 Score=29.32 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=81.8
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecC--CCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVS--SMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
.++.||+.-.. .+.+.++|+....-+.+. .+..| ..+++. ++.||+..-. ....++++++
T Consensus 87 ~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~--------~~~~I~~~~~ 150 (316)
T 1ijq_A 87 IHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG--------TPAKIKKGGL 150 (316)
T ss_dssp TTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS--------SSCEEEEEET
T ss_pred cCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC--------CCCeEEEEcC
Confidence 47899998432 357889998765433332 23223 233443 6899997531 1257899998
Q ss_pred CCCceEEcc--CCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCC
Q 011957 256 RTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGM 331 (474)
Q Consensus 256 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~ 331 (474)
....=+.+. .+..| .++++- +++||+.-... -..+++|+....=+.+.. .
T Consensus 151 dG~~~~~~~~~~~~~P------------------~gla~d~~~~~lY~~D~~~-------~~I~~~d~dg~~~~~~~~-~ 204 (316)
T 1ijq_A 151 NGVDIYSLVTENIQWP------------------NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILE-D 204 (316)
T ss_dssp TSCCEEEEECSSCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEE-C
T ss_pred CCCCeEEEEECCCCCc------------------eEEEEeccCCEEEEEECCC-------CeEEEEecCCCceEEEee-c
Confidence 654433332 12111 344443 68999964322 223788886543333321 1
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
...+. ...+ +++.++.||+... ..+.|.++|+.+.+
T Consensus 205 ~~~~~-~P~g---iav~~~~ly~~d~----~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 205 EKRLA-HPFS---LAVFEDKVFWTDI----INEAIFSANRLTGS 240 (316)
T ss_dssp TTTTS-SEEE---EEEETTEEEEEET----TTTEEEEEETTTCC
T ss_pred CCccC-CcEE---EEEECCEEEEEEC----CCCeEEEEeCCCCc
Confidence 00011 1112 5667899999864 24689999986654
No 257
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=68.51 E-value=79 Score=29.98 Aligned_cols=111 Identities=9% Similarity=0.046 Sum_probs=58.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc--e-eecCC--CCCCccee-eEEEE--CCEEEEEeceecCCCCCccCceEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA--W-SEVSS--MSVGRAYS-KIGIL--NNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W-~~~~~--~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
++++|+|-| +.+|+|+..... + +.+.. +|..-..- ++... ++++|+|-| +..++
T Consensus 236 ~g~~~fFkg-------~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-----------~~yw~ 297 (365)
T 3ba0_A 236 RNQVFLFKD-------DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-----------NQYWR 297 (365)
T ss_dssp GTEEEEEET-------TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-----------TEEEE
T ss_pred CCEEEEEeC-------CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-----------CEEEE
Confidence 799999976 578888754321 1 12322 23211122 22223 589999977 46889
Q ss_pred EeCCCCceEEccCCCccccccccchhhccccccceeeEEEe-CCEEEEeccCCCCcceeccceEEEcCCCCceEE
Q 011957 253 FDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 253 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~ 326 (474)
||..+++-. +..|.+.....+. +.. .+ -++... ++++|+|-|. .-++||..+.+-..
T Consensus 298 yd~~~~~v~--~gyPk~I~~~f~g--~p~---~i-DaA~~~~~g~~YfFkg~---------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 298 YDERRQMMD--PGYPKLITKNFQG--IGP---KI-DAVFYSKNKYYYFFQGS---------NQFEYDFLLQRITK 355 (365)
T ss_dssp EETTTTEEC--SSCCCCHHHHSTT--CCS---SC-SEEEEETTTEEEEEETT---------EEEEEETTTTEEEE
T ss_pred EeCCcceec--CCCCcchhhcCCC--CCC---cc-ceeeEecCCcEEEEeCC---------EEEEEECCccEEec
Confidence 998765422 2222221110000 000 00 233334 8999997662 22788887766544
No 258
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=68.51 E-value=68 Score=28.92 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=42.9
Q ss_pred eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEE----cCCC---------
Q 011957 293 YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYAL----DPSG--------- 359 (474)
Q Consensus 293 ~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~----GG~~--------- 359 (474)
-+|++|+..... -+..+||+. ++.+.+.... .+.+. ..-...++.-+|+||+. |-..
T Consensus 95 ~dG~l~v~~~~~-------~~v~~~~~~-g~~~~~~~~~-~~~~~-~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 95 AQQRLVHCEHGR-------RAITRSDAD-GQAHLLVGRY-AGKRL-NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp TTSCEEEEETTT-------TEEEEECTT-SCEEEEECEE-TTEEC-SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred CCCCEEEEECCC-------CEEEEECCC-CCEEEEEecc-CCCcc-CCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 368888853211 234788886 6676654311 11011 11112244557889986 2211
Q ss_pred CCCCceEEEEECCCCceEEec
Q 011957 360 ALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 360 ~~~~~~v~~yd~~~~~W~~v~ 380 (474)
......|++||+++++.+.+.
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE
T ss_pred ccCCCeEEEEcCCCCcEEEEe
Confidence 012358999999888887763
No 259
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=67.69 E-value=90 Score=30.05 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=100.1
Q ss_pred CCCccceeEEEeCCEEEEEcCcCCCcccceEEE-EeCC-----CCc-eeecCCC-CCCcceeeEEEECCEEEEEeceecC
Q 011957 169 RMGFCGCSIGAVDGCLYVLGGFSRALAMRNVWR-YDPV-----LNA-WSEVSSM-SVGRAYSKIGILNNKLYAVGGVTRG 240 (474)
Q Consensus 169 p~pr~~~~~~~~~~~lyv~GG~~~~~~~~~v~~-yd~~-----t~~-W~~~~~~-p~~r~~~~~~~~~~~lyv~GG~~~~ 240 (474)
|..-.-|+.+.+++.=|.+|=.+++-.-.++=+ |-+. .+. =+.++.- ...-+..++-.++++||+.--...
T Consensus 281 ~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdgvLyLtTRgt~- 359 (670)
T 3ju4_A 281 PSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTR- 359 (670)
T ss_dssp TTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEEEESC-
T ss_pred cceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEecCcC-
Confidence 334567888889888888886554433333222 2111 111 1233322 222234556677999999853221
Q ss_pred CCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCC
Q 011957 241 PGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPD 320 (474)
Q Consensus 241 ~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~ 320 (474)
....-.++.+-+..-..|+.+.- |...... -.-.+..++.||+||... .
T Consensus 360 --~~~~GS~L~rs~d~Gq~w~slrf-p~nvHht-------------nlPFakvgD~l~mFgsER---------------A 408 (670)
T 3ju4_A 360 --GDRLGSSLHRSRDIGQTWESLRF-PHNVHHT-------------TLPFAKVGDDLIMFGSER---------------A 408 (670)
T ss_dssp --TTSCCCEEEEESSTTSSCEEEEC-TTCCCSS-------------CCCEEEETTEEEEEEECS---------------S
T ss_pred --CCCCcceeeeecccCCchhheec-ccccccc-------------CCCcceeCCEEEEEeccc---------------c
Confidence 22334677888888888997631 2111110 034467799999976432 4
Q ss_pred CCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEE-e
Q 011957 321 VNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLA-G 399 (474)
Q Consensus 321 t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~-~ 399 (474)
.++|+.-.+. .|... .--+.|+.-- .+-.+..+.-+|..|...+-.+..-....+.+.+ +
T Consensus 409 ~nEWE~G~pD-------~RY~a-----~yPRtF~~r~-------nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~v 469 (670)
T 3ju4_A 409 ENEWEAGAPD-------DRYKA-----SYPRTFYARL-------NVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVV 469 (670)
T ss_dssp TTCSSTTCCC-------CCSSC-----BCCEEEEEEE-------ETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEE
T ss_pred ccccccCCCc-------ccccc-----cCCceEEEEe-------ecccCCccceEEEEeecceeccccccccccceeEEE
Confidence 5778764431 11110 0112232210 1112335666898887666555555555555444 4
Q ss_pred eCCEE-EEEecC
Q 011957 400 LLGKL-HVITND 410 (474)
Q Consensus 400 ~~~~l-~v~GG~ 410 (474)
-++-| |||||+
T Consensus 470 KD~~lyyiFGgE 481 (670)
T 3ju4_A 470 KDNYIYYMFGGE 481 (670)
T ss_dssp ETTEEEEEEEEB
T ss_pred eCCEEEEEecCc
Confidence 56665 567773
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=67.66 E-value=69 Score=31.00 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=74.3
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+.--. ..+.++|+.+++.+.+... .. .-..+++- ++.|||..... ......+..++...
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~~-~~-~P~~ia~d~~G~~lyvad~~~-----~~~~~~v~~~~~~g- 214 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYSG-LS-KVRTICWTHEADSMIITNDQN-----NNDRPNNYILTRES- 214 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEECC-CS-CEEEEEECTTSSEEEEEECCS-----CTTSEEEEEEEGGG-
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEecC-CC-CcceEEEeCCCCEEEEEeCCC-----CcccceEEEEeCCC-
Confidence 5789998421 6899999999887776431 11 11122222 34599986432 11123456666532
Q ss_pred ceE---EccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 259 LWS---EILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 259 ~W~---~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
.|. .++.+..| +++++. ++.||+.--.. -...+||+.+..-..+......
T Consensus 215 ~~~~~~~l~~~~~p------------------~giavdp~~g~lyv~d~~~-------~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 215 GFKVITELTKGQNC------------------NGAETHPINGELYFNSWNA-------GQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp TSCSEEEEEECSSC------------------CCEEECTTTCCEEEEETTT-------TEEEEEETTTTEEEEEEECSSS
T ss_pred ceeeeeeeccCCCc------------------eEEEEeCCCCEEEEEECCC-------CEEEEEECCCCcEEEEEEcCCC
Confidence 332 33322222 344443 68899853211 2247899987755333220111
Q ss_pred CCCccccCcceEEEECCE-EEEEcCCCCCCCceEEEEECC
Q 011957 334 GWPVRQAGTKLSITVEGE-LYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~v~~yd~~ 372 (474)
.+|. ..++.-+++ ||+..- ..+.|++||.+
T Consensus 270 ~~P~-----gia~~pdG~~lyv~d~----~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEF-----HIQFHPSGNYAYIVVV----NQHYILRSDYD 300 (430)
T ss_dssp SCCE-----EEEECTTSSEEEEEET----TTTEEEEEEEE
T ss_pred Ccce-----eEEEcCCCCEEEEEEC----CCCEEEEEeCC
Confidence 1122 112333455 999854 23578887655
No 261
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=66.65 E-value=1.1e+02 Score=30.57 Aligned_cols=176 Identities=14% Similarity=-0.047 Sum_probs=85.8
Q ss_pred EEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchh
Q 011957 199 VWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAF 278 (474)
Q Consensus 199 v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 278 (474)
+.+||+.+.+-+.+...+. . .....-+|+..++++.... ....++++|+.+++.+.+..-.....
T Consensus 134 ~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~-----~~~~i~~~d~~~g~~~~l~~~~~~~~------- 198 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGG-----GRVSLFTSNLSSGGLRVFDSGEGSFS------- 198 (582)
T ss_dssp EEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEET-----TEEEEEEEETTTCCCEEECCSSCEEE-------
T ss_pred ceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCC-----CCeEEEEEcCCCCCceEeecCCCccc-------
Confidence 3478988887766654332 2 2222335555555554311 12469999999999887754322111
Q ss_pred hccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcc---eEEEECCEEEEE
Q 011957 279 LADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTK---LSITVEGELYAL 355 (474)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~---~~~~~~~~lyv~ 355 (474)
.....-+|+..+.+..++. .....+|+++++...+.. ... ......+.. ....-+|++++.
T Consensus 199 ---------~~~~SpDG~~l~~~~~~~~-----~~i~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 199 ---------SASISPGMKVTAGLETARE-----ARLVTVDPRDGSVEDLEL-PSK-DFSSYRPTAITWLGYLPDGRLAVV 262 (582)
T ss_dssp ---------EEEECTTSCEEEEEECSSC-----EEEEEECTTTCCEEECCC-SCS-HHHHHCCSEEEEEEECTTSCEEEE
T ss_pred ---------cceECCCCCEEEEccCCCe-----eEEEEEcCCCCcEEEccC-CCc-ChhhhhhccccceeEcCCCcEEEE
Confidence 1122335654443332221 123789999988873332 110 000000000 013456677776
Q ss_pred cCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEe
Q 011957 356 DPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQAD 421 (474)
Q Consensus 356 GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d 421 (474)
+..+ +.+..|+. ++... .+.+ .-..+...++++++.+........+..+|
T Consensus 263 ~~~~----g~~~l~~~--g~~~~----~~~~------~v~~~~~sdg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 263 ARRE----GRSAVFID--GERVE----APQG------NHGRVVLWRGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEET----TEEEEEET--TEEEC----CCSS------EEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred EEcC----CcEEEEEE--CCeec----cCCC------ceEEEEecCCEEEEEEcCCCCCCeEEEEc
Confidence 6432 35677777 33222 1111 11122222888887776544433444444
No 262
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=66.27 E-value=75 Score=28.58 Aligned_cols=138 Identities=14% Similarity=0.251 Sum_probs=72.4
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCC-CCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPV-LNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
.++.||+... ...++.||+. ...|+.-.+.+ ...+.+.. ++.||+... ...+.+||+.
T Consensus 106 ~~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~~~---~~~~~~~~~~g~l~vgt~----------~~~l~~~d~~- 165 (330)
T 3hxj_A 106 FEDILYVTSM------DGHLYAINTDGTEKWRFKTKKA---IYATPIVSEDGTIYVGSN----------DNYLYAINPD- 165 (330)
T ss_dssp ETTEEEEECT------TSEEEEECTTSCEEEEEECSSC---CCSCCEECTTSCEEEECT----------TSEEEEECTT-
T ss_pred ECCEEEEEec------CCEEEEEcCCCCEEEEEcCCCc---eeeeeEEcCCCEEEEEcC----------CCEEEEECCC-
Confidence 4888887532 2468899987 33466543221 11222334 677777432 1468899998
Q ss_pred Cc--eEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCC-CceEEcCCCCCC
Q 011957 258 GL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDV-NSWVEMPVGMGE 333 (474)
Q Consensus 258 ~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t-~~W~~~~~~~~~ 333 (474)
.+ |+.-. +.+.. .+.+. .++.||+.. -+..+||... ..|+.... .
T Consensus 166 g~~~~~~~~--~~~~~----------------~~~~~d~~g~l~v~t----------~~l~~~d~~g~~~~~~~~~-~-- 214 (330)
T 3hxj_A 166 GTEKWRFKT--NDAIT----------------SAASIGKDGTIYFGS----------DKVYAINPDGTEKWNFYAG-Y-- 214 (330)
T ss_dssp SCEEEEEEC--SSCCC----------------SCCEECTTCCEEEES----------SSEEEECTTSCEEEEECCS-S--
T ss_pred CCEeEEEec--CCCce----------------eeeEEcCCCEEEEEe----------CEEEEECCCCcEEEEEccC-C--
Confidence 43 65432 21111 22233 478888744 1337888432 24765432 1
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc-eEE
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT-WKV 378 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~-W~~ 378 (474)
... .+.+..-++.||+... .+.+.+||++... |..
T Consensus 215 ----~~~-~~~~~~~~g~l~v~t~-----~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 215 ----WTV-TRPAISEDGTIYVTSL-----DGHLYAINPDGTEKWRF 250 (330)
T ss_dssp ----CCC-SCCEECTTSCEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred ----cce-eceEECCCCeEEEEcC-----CCeEEEECCCCCEeEEe
Confidence 111 1113333568888642 2478888876554 544
No 263
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=65.93 E-value=74 Score=28.40 Aligned_cols=64 Identities=6% Similarity=0.040 Sum_probs=34.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCC--ceeecCCCCCCcceeeEEEE----CCEEEEEeceecCCCCCccCceEEEEe
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLN--AWSEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
++.+++.|+.+ ..+.+||..+. .++.+..+........++.+ ++.+++.|+.+ ..+.+||
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d---------g~v~vwd 87 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD---------KTVKLWE 87 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT---------SCEEEEE
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC---------CeEEEEe
Confidence 55566666543 35777777643 34443322222222222333 26677777753 4678888
Q ss_pred CCCC
Q 011957 255 PRTG 258 (474)
Q Consensus 255 ~~t~ 258 (474)
..+.
T Consensus 88 ~~~~ 91 (351)
T 3f3f_A 88 EDPD 91 (351)
T ss_dssp ECTT
T ss_pred cCCC
Confidence 8764
No 264
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=65.78 E-value=1.6e+02 Score=32.14 Aligned_cols=79 Identities=11% Similarity=-0.054 Sum_probs=41.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecC-CCCCccCceEEEEeCCCCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRG-PGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~~~yd~~t~~ 259 (474)
+|+.++++.. ...++++|+.+.+-..+..-........+..-+++..++++.... .........+.++|..+.+
T Consensus 389 DG~~la~~~~-----~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 389 NGKFAVVAND-----RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TSSEEEEEET-----TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCEEEEECC-----CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 5555555432 247999999998766654222111111122225665566654310 0001123589999999887
Q ss_pred eEEcc
Q 011957 260 WSEIL 264 (474)
Q Consensus 260 W~~~~ 264 (474)
...+.
T Consensus 464 ~~~l~ 468 (1045)
T 1k32_A 464 IFAAT 468 (1045)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 55543
No 265
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=65.76 E-value=1.2e+02 Score=30.92 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=92.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.||+.-- ..+.++++++.....+.+..-... .-.++++ .+++||+.-.. ...+++.++...
T Consensus 360 ~~~ly~sD~-----~~~~I~r~~~~g~~~~~v~~~~~~-~p~GlAvD~~~~~lY~tD~~---------~~~I~v~~~~G~ 424 (619)
T 3s94_A 360 EGYIYWTDD-----EVRAIRRSFIDGSGSQFVVTAQIA-HPDGIAVDWVARNLYWTDTG---------TDRIEVTRLNGT 424 (619)
T ss_dssp TTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEETT---------TTEEEEEETTSC
T ss_pred CCeEEEEeC-----CCCeEEEEEcCCCccEEEEECCCC-CcCceEEecccCcEEEEeCC---------CCcEEEEeCCCC
Confidence 578888732 245788888877666554321111 1123444 37899997431 367889988765
Q ss_pred ceEEcc--CCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCC
Q 011957 259 LWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEG 334 (474)
Q Consensus 259 ~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~ 334 (474)
.-+.+. .+..| .++++. +|.||+..-... ...++.++....=+.+.. -...
T Consensus 425 ~~~~l~~~~l~~P------------------~~iavdp~~G~ly~tD~g~~------~~I~r~~~dG~~~~~l~~-~~l~ 479 (619)
T 3s94_A 425 MRKILISEDLEEP------------------RAIVLDPMVGYMYWTDWGEI------PKIERAALDGSDRVVLVN-TSLG 479 (619)
T ss_dssp SCEEEECTTCCSE------------------EEEEEETTTTEEEEEECSSS------CEEEEEETTSCSCEEEEC-SSCS
T ss_pred eEEEEEECCCCCe------------------eeEEEEcCCCcEEEecCCCC------CEEEEEccCCCccEEEEe-CCCC
Confidence 444432 23333 233443 689998531110 123555554332222222 1111
Q ss_pred CCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 335 WPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 335 ~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
+|. + +++- +++||+... ..+.|+.+|++...=+.+.. ..+ ...+++++.++.||+.--
T Consensus 480 ~P~---G---lalD~~~~~LY~aD~----~~~~I~~~~~dG~~~~~~~~----~~l---~~P~glav~~~~ly~tD~ 539 (619)
T 3s94_A 480 WPN---G---LALDYDEGKIYWGDA----KTDKIEVMNTDGTGRRVLVE----DKI---PHIFGFTLLGDYVYWTDW 539 (619)
T ss_dssp CEE---E---EEEETTTTEEEEEET----TTTEEEEEESSSCCCEEEEE----CCC---CSSCCEEEETTEEEEECT
T ss_pred CCe---e---eEEcccCCEEEEEEC----CCCEEEEEecCCCceEEEec----cCC---CCcEEEEEECCEEEEeec
Confidence 121 1 3333 689999964 24589999987654333321 111 123578889999998754
No 266
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=65.12 E-value=1.3e+02 Score=31.14 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=44.7
Q ss_pred EEEcCCCC--c-eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCC--CceEEeccCCCCCCCC
Q 011957 315 EVYDPDVN--S-WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHD--DTWKVVVGDVPLPNFT 389 (474)
Q Consensus 315 ~~yd~~t~--~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~--~~W~~v~~~~p~~~~~ 389 (474)
+.+|..+. . |+.+..... .. ...+...++.||+....+ .....|+.+|.++ ..|+.+... . .
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~-----~~--~~~~~~dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~l~~~---~--~ 363 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLK-----AQ--WDFVDGVGDQLWFVSGDG-APLKKIVRVDLSGSTPRFDTVVPE---S--K 363 (741)
T ss_dssp EEEEEETTEECCCEEEECSSS-----SC--EEEEEEETTEEEEEECTT-CTTCEEEEEECSSSSCEEEEEECC---C--S
T ss_pred EEEECCCCCCcccEEecCCCC-----ce--EEEEeccCCEEEEEECCC-CCCCEEEEEeCCCCccccEEEecC---C--C
Confidence 67787776 6 888765211 11 111234567777775432 2246899999988 579887421 1 0
Q ss_pred CCCCCeEEEeeCCEEEEEec
Q 011957 390 DSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 390 ~~r~~~~~~~~~~~l~v~GG 409 (474)
. ....+...+++|++...
T Consensus 364 ~--~l~~~~~~~~~lv~~~~ 381 (741)
T 1yr2_A 364 D--NLESVGIAGNRLFASYI 381 (741)
T ss_dssp S--EEEEEEEEBTEEEEEEE
T ss_pred C--eEEEEEEECCEEEEEEE
Confidence 1 11123344777776655
No 267
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=64.83 E-value=98 Score=29.45 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=15.8
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++.+++.|+.+ ..+.+||..+.
T Consensus 243 ~~~~l~s~~~d---------g~i~i~d~~~~ 264 (430)
T 2xyi_A 243 HESLFGSVADD---------QKLMIWDTRNN 264 (430)
T ss_dssp CTTEEEEEETT---------SEEEEEETTCS
T ss_pred CCCEEEEEeCC---------CeEEEEECCCC
Confidence 46677777642 67899999865
No 268
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=64.22 E-value=44 Score=32.06 Aligned_cols=19 Identities=11% Similarity=0.315 Sum_probs=14.2
Q ss_pred EEEEEcCCCCCCCceEEEEECCC
Q 011957 351 ELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 351 ~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
.+++.|+. .+.|.+||..+
T Consensus 291 ~~l~tg~~----dg~v~vwd~~~ 309 (430)
T 2xyi_A 291 FILATGSA----DKTVALWDLRN 309 (430)
T ss_dssp TEEEEEET----TSEEEEEETTC
T ss_pred CEEEEEeC----CCeEEEEeCCC
Confidence 47888774 35799999876
No 269
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=63.81 E-value=1.4e+02 Score=30.70 Aligned_cols=65 Identities=8% Similarity=0.142 Sum_probs=33.4
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCc--eeec-CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCC
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNA--WSEV-SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPR 256 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~ 256 (474)
+.+++.|+.+ ..+.+||..+.. +... ..+.........+.+ ++++.+.|+.+ ..+.+||..
T Consensus 395 ~~~l~s~s~D-----~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D---------g~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRD-----KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD---------GELRLWDLA 460 (694)
T ss_dssp CSEEEEEETT-----SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SEEEEEETT
T ss_pred CCEEEEEeCC-----CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC---------CcEEEEECC
Confidence 3566777654 467778876542 1110 001000011112222 56777777753 578999998
Q ss_pred CCce
Q 011957 257 TGLW 260 (474)
Q Consensus 257 t~~W 260 (474)
+..-
T Consensus 461 ~~~~ 464 (694)
T 3dm0_A 461 AGVS 464 (694)
T ss_dssp TTEE
T ss_pred CCcc
Confidence 7643
No 270
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=63.27 E-value=70 Score=29.92 Aligned_cols=63 Identities=25% Similarity=0.219 Sum_probs=38.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc---eeecCCCCCCcceeeEEEE---CCEEEEEeceecCCCCCccCceEEEEe
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA---WSEVSSMSVGRAYSKIGIL---NNKLYAVGGVTRGPGGLTPLQSAEVFD 254 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~yd 254 (474)
+|.+||.+... ...++++||.... |-.-.+....+.+....++ +..|++..+ . ..+..||
T Consensus 147 ~GnaYVt~s~~----~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~---------g~L~~fD 212 (334)
T 2p9w_A 147 DGNSYVAFALG----MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P---------RALTAFD 212 (334)
T ss_dssp TSCEEEEEEES----SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-S---------SSEEEEE
T ss_pred CCCEEEeCCCC----CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-C---------CeEEEEc
Confidence 68899976432 1569999997653 5433333344555554444 446666654 2 4688999
Q ss_pred CCC
Q 011957 255 PRT 257 (474)
Q Consensus 255 ~~t 257 (474)
+.+
T Consensus 213 ~~~ 215 (334)
T 2p9w_A 213 VSK 215 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 874
No 271
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=63.01 E-value=61 Score=35.47 Aligned_cols=143 Identities=15% Similarity=0.023 Sum_probs=74.3
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEECCEEEEEeceecCCCCCccCceEE-EEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPGGLTPLQSAE-VFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~-~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
..++++|..+..-..+...+..+....... +++.+++++. ...++ +||..+..-..+... ....
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~---------~~~l~~~~d~~~~~~~~l~~~---~~~~-- 381 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR---------EGDFLGIYDYRTGKAEKFEEN---LGNV-- 381 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET---------TEEEEEEEETTTCCEEECCCC---CCSE--
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC---------CCceEEEEECCCCCceEecCC---ccce--
Confidence 467777777766555433222122222222 5555554432 24788 899988776655411 1110
Q ss_pred chhhccccccceeeE-EEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEE
Q 011957 276 TAFLADLLKPIATGM-SSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYA 354 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~-~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv 354 (474)
..+ ..-+|+..+++..+ ....++|+++++-..+..... ... ...+..-+++.++
T Consensus 382 ------------~~~~~SpDG~~la~~~~~-------~~v~~~d~~tg~~~~~~~~~~----~~v--~~~~~SpDG~~la 436 (1045)
T 1k32_A 382 ------------FAMGVDRNGKFAVVANDR-------FEIMTVDLETGKPTVIERSRE----AMI--TDFTISDNSRFIA 436 (1045)
T ss_dssp ------------EEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEEEECSS----SCC--CCEEECTTSCEEE
T ss_pred ------------eeeEECCCCCEEEEECCC-------CeEEEEECCCCceEEeccCCC----CCc--cceEECCCCCeEE
Confidence 222 23356655554433 123788998888766542111 111 1113445677666
Q ss_pred EcCCCC------CCCceEEEEECCCCceEEe
Q 011957 355 LDPSGA------LDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 355 ~GG~~~------~~~~~v~~yd~~~~~W~~v 379 (474)
+++... .....++.||.++.+...+
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred EEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 654321 2235899999998875554
No 272
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=62.78 E-value=1.3e+02 Score=30.26 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCC-----CCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSM-----SVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVF 253 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~-----p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~y 253 (474)
++.+++.|+.+ ..+.+||..+.+-.. +... .....-.+++.. +++.++.|+.+ ..+.+|
T Consensus 201 dg~~las~s~D-----~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D---------~~v~lW 266 (611)
T 1nr0_A 201 DGSLFASTGGD-----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---------KTIKIW 266 (611)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---------SEEEEE
T ss_pred CCCEEEEEECC-----CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---------CeEEEE
Confidence 56677777654 457888887766432 2110 111111112222 56677777743 678999
Q ss_pred eCCCCceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 254 DPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 254 d~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
|..+.+....-......... ...+..++...+.++.++. ...+|+.+++-...-....
T Consensus 267 d~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~s~s~d~~-------i~~~~~~~~~~~~~~~gh~- 324 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQ--------------QLGIIWTKQALVSISANGF-------INFVNPELGSIDQVRYGHN- 324 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGC--------------EEEEEECSSCEEEEETTCC-------EEEEETTTTEEEEEECCCS-
T ss_pred eCCCCceeeeecCCCCccce--------------eEEEEEcCCEEEEEeCCCc-------EEEEeCCCCCcceEEcCCC-
Confidence 99887765432221111110 1222335555555554431 2567776654322211010
Q ss_pred CCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEE
Q 011957 334 GWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
... ...+..-+++.++.|+. .+.|..||..+.+-..
T Consensus 325 ----~~v-~~l~~spdg~~l~s~s~----D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 325 ----KAI-TALSSSADGKTLFSADA----EGHINSWDISTGISNR 360 (611)
T ss_dssp ----SCE-EEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred ----CCE-EEEEEeCCCCEEEEEeC----CCcEEEEECCCCceee
Confidence 000 11122335677777664 3578999998876544
No 273
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=61.54 E-value=39 Score=35.35 Aligned_cols=148 Identities=11% Similarity=-0.009 Sum_probs=80.0
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecC--CCCCCcceeeEEE--ECCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVS--SMSVGRAYSKIGI--LNNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
.++.||+.-. ..+.++++|+....-+.+. .+..|+ .+++ .++.||+.--. ....++++++
T Consensus 463 ~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~--------~~~~I~~~~~ 526 (699)
T 1n7d_A 463 IHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG--------TPAKIKKGGL 526 (699)
T ss_dssp SSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS--------SSCCEEBCCS
T ss_pred eCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC--------CCCeEEEEeC
Confidence 4678998632 2457889998876544442 222332 2233 26788876411 1246777776
Q ss_pred CCCceEEcc--CCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCC
Q 011957 256 RTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGM 331 (474)
Q Consensus 256 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~ 331 (474)
....-+.+. .+..| .++++ .+++||+.-... -.+++||+....-+.+.. .
T Consensus 527 dG~~~~~l~~~~l~~P------------------nGlavd~~~~~LY~aD~~~-------~~I~~~d~dG~~~~~~~~-~ 580 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWP------------------NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILE-D 580 (699)
T ss_dssp SSCCCCEESCSSCSSC------------------CCEEECTTTCCEEEEETTT-------TEEEEECSSSSCCEEECC-C
T ss_pred CCCCeeEEEeCCCCCc------------------cEEEEeccCCEEEEEecCC-------CeEEEEccCCCceEEEEe-c
Confidence 543322221 12211 33344 368899964322 224788886544444332 1
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceE
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWK 377 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~ 377 (474)
...++.+ .+ +++.++.||+... ..+.|.++|+.+.+-.
T Consensus 581 ~~~~~~P-~g---lavd~~~lywtd~----~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 581 EKRLAHP-FS---LAVFEDKVFWTDI----INEAIFSANRLTGSDV 618 (699)
T ss_dssp SSSCSSC-CC---CEEETTEEEEECS----TTTCEEEEETTTEEEE
T ss_pred CCcCCCc-eE---eEEECCEEEEEeC----CCCeEEEEEccCCCce
Confidence 1111111 12 5678899999964 2468999998766433
No 274
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=61.31 E-value=1e+02 Score=28.39 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCC-----cceeeEEEE--CCEEEEEec---eecCCCCCccCceE
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVG-----RAYSKIGIL--NNKLYAVGG---VTRGPGGLTPLQSA 250 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-----r~~~~~~~~--~~~lyv~GG---~~~~~~~~~~~~~~ 250 (474)
+++||+..-.........+++||+.+++-...-.++.. ..-..+++- ++.+||... .. ..+
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~---------~~i 147 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK---------AAL 147 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG---------CEE
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC---------CeE
Q ss_pred EEEeCC-CCceEEccC-----------------------------CCccccccccchhhccccccceeeEEEeCCEEEEe
Q 011957 251 EVFDPR-TGLWSEILS-----------------------------MPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVP 300 (474)
Q Consensus 251 ~~yd~~-t~~W~~~~~-----------------------------~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~ 300 (474)
.+||+. ...|+.+.. ......+ .+...-+..||+.
T Consensus 148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g---------------ia~s~dg~~ly~~ 212 (343)
T 2qe8_A 148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG---------------IVLDAENEWLYLS 212 (343)
T ss_dssp EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE---------------EEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce---------------eEeccCCCEEEEE
Q ss_pred ccCCCCcceeccceEEEcCCC-----------------CceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCC
Q 011957 301 QSLYFWPFFVDVGGEVYDPDV-----------------NSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDS 363 (474)
Q Consensus 301 gG~~~~~~~~~~gg~~yd~~t-----------------~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~ 363 (474)
.- .+...|...+ ...-....+... ++--+|.||+..- ..
T Consensus 213 ~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi-----------a~d~~G~l~va~~----~~ 268 (343)
T 2qe8_A 213 PM---------HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI-----------SIDKDHNIYVGDL----AH 268 (343)
T ss_dssp ES---------SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE-----------EECTTCCEEEEEG----GG
T ss_pred eC---------CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE-----------EECCCCCEEEEcc----CC
Q ss_pred ceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe-eCCEEEEEe
Q 011957 364 AKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG-LLGKLHVIT 408 (474)
Q Consensus 364 ~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~-~~~~l~v~G 408 (474)
+.|.+||+++.+...+. ..+......+++. -+++|||..
T Consensus 269 ~~V~~~d~~~G~~~~~~------~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 269 SAIGVITSADRAYKLLV------TDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TEEEEEETTTTEEEEEE------ECGGGSCEEEEEECTTSCEEEEE
T ss_pred CeEEEEECCCCCEEEEE------ECCceecCCeeEECCCCcEEEEe
No 275
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=60.05 E-value=1.6e+02 Score=30.18 Aligned_cols=65 Identities=9% Similarity=-0.133 Sum_probs=33.0
Q ss_pred eEEEcCCCCc-eEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 314 GEVYDPDVNS-WVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 314 g~~yd~~t~~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
..++|..+++ -..+..+... .............-+|+++++..........|+.+|+++.+-..+
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDP-RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCG-GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCceeEEeeCCccC-CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 3678887776 3444431000 000001111134457776655432222345899999998876654
No 276
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=59.92 E-value=1.4e+02 Score=29.66 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=72.4
Q ss_pred cceEEEEeC--CCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccc
Q 011957 196 MRNVWRYDP--VLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQ 272 (474)
Q Consensus 196 ~~~v~~yd~--~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~ 272 (474)
...+|..|. ....- .+...+..+ ...... ++.++++.+.. ..+.+||..+++-+.+...+. .
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~~~~~~~--~~~~s~dg~~~~~~s~~~---------~~~~l~d~~~g~~~~l~~~~~---~ 153 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLEAVKPMR--ILSGVDTGEAVVFTGATE---------DRVALYALDGGGLRELARLPG---F 153 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECTTSCSBE--EEEEEECSSCEEEEEECS---------SCEEEEEEETTEEEEEEEESS---C
T ss_pred ceEEEEEeccCCCccc-cccCCCCce--eeeeCCCCCeEEEEecCC---------CCceEEEccCCcEEEeecCCC---c
Confidence 356777877 44332 333332222 223333 44555554432 234488998887766643222 1
Q ss_pred cccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEE
Q 011957 273 VLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGEL 352 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~l 352 (474)
.....-+|+..++++.+.... ...+.+|+.+++++.+.... ... ...+..-||+.
T Consensus 154 ---------------~~~~spDG~~la~~~~~~~~~---~~i~~~d~~~g~~~~l~~~~-----~~~--~~~~~SpDG~~ 208 (582)
T 3o4h_A 154 ---------------GFVSDIRGDLIAGLGFFGGGR---VSLFTSNLSSGGLRVFDSGE-----GSF--SSASISPGMKV 208 (582)
T ss_dssp ---------------EEEEEEETTEEEEEEEEETTE---EEEEEEETTTCCCEEECCSS-----CEE--EEEEECTTSCE
T ss_pred ---------------eEEECCCCCEEEEEEEcCCCC---eEEEEEcCCCCCceEeecCC-----Ccc--ccceECCCCCE
Confidence 222344565555443221111 11378899999988875411 111 11133446665
Q ss_pred EEEcCCCCCCCceEEEEECCCCceEE
Q 011957 353 YALDPSGALDSAKIKVYDYHDDTWKV 378 (474)
Q Consensus 353 yv~GG~~~~~~~~v~~yd~~~~~W~~ 378 (474)
++.+... ....|+.+|+++++...
T Consensus 209 l~~~~~~--~~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 209 TAGLETA--REARLVTVDPRDGSVED 232 (582)
T ss_dssp EEEEECS--SCEEEEEECTTTCCEEE
T ss_pred EEEccCC--CeeEEEEEcCCCCcEEE
Confidence 5543322 12489999999988773
No 277
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=57.48 E-value=35 Score=35.14 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.0
Q ss_pred ECCEEEEEcCCCCCCCceEEEEECCCC
Q 011957 348 VEGELYALDPSGALDSAKIKVYDYHDD 374 (474)
Q Consensus 348 ~~~~lyv~GG~~~~~~~~v~~yd~~~~ 374 (474)
.++++|+|-| +..|+||..++
T Consensus 547 ~~gktYFFkG------~~ywryd~~~~ 567 (631)
T 1ck7_A 547 KNKKTYIFAG------DKFWRYNEVKK 567 (631)
T ss_dssp TTCEEEEEET------TEEEEEETTTT
T ss_pred CCCeEEEEEC------CEEEEEcCCcc
Confidence 4689999976 57899998765
No 278
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=56.54 E-value=1.2e+02 Score=27.55 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=14.7
Q ss_pred cceEEEEeCCCCceeecCCC
Q 011957 196 MRNVWRYDPVLNAWSEVSSM 215 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~ 215 (474)
...++++|..+++...+...
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~ 103 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEA 103 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE
T ss_pred cceEEEEECCCCceEEEEcC
Confidence 45799999988877766543
No 279
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=54.99 E-value=1.6e+02 Score=28.85 Aligned_cols=143 Identities=9% Similarity=0.076 Sum_probs=68.0
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++..++.|+.+ ..+.+||.....-..+..-. .....+.+ +++.++.|+.+ ..+.+||....
T Consensus 355 ~g~~l~~~~~d-----g~v~~~~~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d---------~~v~~~~~~~~ 417 (577)
T 2ymu_A 355 DGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDD---------KTVKLWNRNGQ 417 (577)
T ss_dssp TSSEEEEEETT-----SEEEEEETTCCEEEEEECCS---SCEEEEEECTTSSCEEEEETT---------SEEEEECTTCC
T ss_pred CCCEEEEEeCC-----CEEEEEcCCCCEEEEecCCC---CCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCC
Confidence 55666666543 35777886544333332111 11122222 56666666642 56888886543
Q ss_pred ceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCc
Q 011957 259 LWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPV 337 (474)
Q Consensus 259 ~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~ 337 (474)
.-..+.....+. .+++ .-++++.+.++.++ ....||.....-..+.. .. .
T Consensus 418 ~~~~~~~~~~~v-----------------~~~~~s~d~~~l~~~~~d~-------~v~~w~~~~~~~~~~~~-~~----~ 468 (577)
T 2ymu_A 418 LLQTLTGHSSSV-----------------WGVAFSPDDQTIASASDDK-------TVKLWNRNGQLLQTLTG-HS----S 468 (577)
T ss_dssp EEEEEECCSSCE-----------------EEEEECTTSSEEEEEETTS-------EEEEEETTSCEEEEEEC-CS----S
T ss_pred EEEEecCCCCCe-----------------EEEEECCCCCEEEEEcCCC-------EEEEEECCCCEEEEEcC-CC----C
Confidence 333322211110 2222 23566666655443 22567765544444332 11 0
Q ss_pred cccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 338 RQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 338 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.. ...+..-++++++.|+. ...|..||.....
T Consensus 469 ~v--~~~~~spd~~~las~~~----d~~i~iw~~~~~~ 500 (577)
T 2ymu_A 469 SV--RGVAFSPDGQTIASASD----DKTVKLWNRNGQL 500 (577)
T ss_dssp CE--EEEEECTTSCEEEEEET----TSEEEEEETTSCE
T ss_pred CE--EEEEEcCCCCEEEEEeC----CCEEEEEcCCCCE
Confidence 10 11123346777777763 3578888965543
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=54.03 E-value=1.4e+02 Score=27.73 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=87.2
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccC--CCccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILS--MPFSKAQ 272 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~--~p~~r~~ 272 (474)
+.+.++++.....+.+.+-. ..-.+++.. +++||+.--. ...+.++++....-+.+.. +..|
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d~~~~~ly~~D~~---------~~~I~r~~~~g~~~~~~~~~~~~~p--- 118 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRELVFWSDVT---------LDRILRANLNGSNVEEVVSTGLESP--- 118 (349)
T ss_dssp SCEEEECTTSCCEEEEECSC--SCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECSSCSCC---
T ss_pred cceEEEeCCCCeeEEeecCC--CceEEEEEeccccEEEEEecc---------CCceEEEecCCCCceEEEeCCCCCc---
Confidence 45788888877766543211 122333433 5899997532 3578999998776555422 2211
Q ss_pred cccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEE--
Q 011957 273 VLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV-- 348 (474)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~-- 348 (474)
.++++ .+++||+.-... -..+++|+....-+.+.... +..++ + +++.
T Consensus 119 ---------------~glavd~~~g~ly~~d~~~-------~~I~~~~~dG~~~~~l~~~~---l~~P~-~---iavdp~ 169 (349)
T 3v64_C 119 ---------------GGLAVDWVHDKLYWTDSGT-------SRIEVANLDGAHRKVLLWQS---LEKPR-A---IALHPM 169 (349)
T ss_dssp ---------------CEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEECTT---CSCEE-E---EEEETT
T ss_pred ---------------cEEEEecCCCeEEEEcCCC-------CeEEEEcCCCCceEEEEeCC---CCCcc-e---EEEecC
Confidence 23343 478999964322 23477887765444332201 11121 1 3443
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe--eCCEEEEEec
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG--LLGKLHVITN 409 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG 409 (474)
++.||+..-.. ...|++++++...-+.+.. . . .....+++. .+++||+.-.
T Consensus 170 ~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~---~-~---~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 170 EGTIYWTDWGN---TPRIEASSMDGSGRRIIAD---T-H---LFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp TTEEEEEECSS---SCEEEEEETTSCSCEESCC---S-S---CSCEEEEEEETTTTEEEEEET
T ss_pred cCeEEEeccCC---CCEEEEEeCCCCCcEEEEE---C-C---CCCcceEEEeCCCCEEEEEEC
Confidence 78999986421 3689999988654444321 0 1 111234444 3678888754
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=51.95 E-value=1.6e+02 Score=27.92 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=83.9
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCC----ceEE-cc-CCCc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG----LWSE-IL-SMPF 268 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~----~W~~-~~-~~p~ 268 (474)
+++.+.|+....+..+.+ ....-.+++.. +++||+.--. ...+.++++... .... +. .+..
T Consensus 92 ~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~---------~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp TEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT---------TTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC---------CCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 577888888777766532 12223344444 6899997542 257888888652 2222 22 2221
Q ss_pred cccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEE
Q 011957 269 SKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSI 346 (474)
Q Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~ 346 (474)
| .++++ .+++||+.-... -..+++|+....-+.+.... ...++ + ++
T Consensus 161 p------------------~glavD~~~~~lY~~d~~~-------~~I~~~~~~g~~~~~l~~~~---~~~P~-~---ia 208 (400)
T 3p5b_L 161 P------------------DGLAVDWIHSNIYWTDSVL-------GTVSVADTKGVKRKTLFREN---GSKPR-A---IV 208 (400)
T ss_dssp E------------------EEEEEETTTTEEEEEETTT-------TEEEEECTTTCSEEEEEECS---SCCEE-E---EE
T ss_pred c------------------ccEEEEecCCceEEEECCC-------CeEEEEeCCCCceEEEEeCC---CCCcc-e---EE
Confidence 1 33344 479999964332 22378888776655443211 11111 1 33
Q ss_pred E--ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEe--eCCEEEEEec
Q 011957 347 T--VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAG--LLGKLHVITN 409 (474)
Q Consensus 347 ~--~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~--~~~~l~v~GG 409 (474)
+ .++.||+..-. ....|++++++...=+.+.. ..+ ....+++. .+++||+.-.
T Consensus 209 vdp~~g~ly~td~~---~~~~I~~~~~dG~~~~~~~~----~~l---~~P~glavd~~~~~lY~aD~ 265 (400)
T 3p5b_L 209 VDPVHGFMYWTDWG---TPAKIKKGGLNGVDIYSLVT----ENI---QWPNGITLDLLSGRLYWVDS 265 (400)
T ss_dssp EETTTTEEEEEECS---SSCCEEEEETTSCSCEEEEC----SSC---SCEEEEEEETTTTEEEEEET
T ss_pred EecccCeEEEEeCC---CCCEEEEEeCCCCccEEEEE----CCC---CceEEEEEEeCCCEEEEEEC
Confidence 3 36899998621 12579999987654333311 011 11234443 3677888654
No 282
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=51.54 E-value=88 Score=29.91 Aligned_cols=76 Identities=13% Similarity=0.003 Sum_probs=42.1
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEEeCC--EEEEeccCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRG--RLFVPQSLYF 305 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~iyv~gG~~~ 305 (474)
++++||.-+..........-+++.++|.++.+-..--++..+.. ...+..++ .+|+..+..
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~----------------~lavs~D~~~~ly~tn~~~- 353 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID----------------SINVSQDEKPLLYALSTGD- 353 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEEC----------------EEEECSSSSCEEEEEETTT-
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcc----------------eEEECCCCCeEEEEEcCCC-
Confidence 68999975422111112235789999999877553322222111 22233455 477754322
Q ss_pred CcceeccceEEEcCCCCceEE
Q 011957 306 WPFFVDVGGEVYDPDVNSWVE 326 (474)
Q Consensus 306 ~~~~~~~gg~~yd~~t~~W~~ 326 (474)
-...+||..+++-..
T Consensus 354 ------~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 354 ------KTLYIHDAESGEELR 368 (386)
T ss_dssp ------TEEEEEETTTCCEEE
T ss_pred ------CeEEEEECCCCcEEE
Confidence 223799999987543
No 283
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=50.43 E-value=1.5e+02 Score=26.99 Aligned_cols=61 Identities=7% Similarity=0.149 Sum_probs=32.8
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceee-cCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSE-VSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.+.+.|+.+ ..+.+||..+.+... +..- .....++.+ +++.++.||.+ ..+.+||...
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~h---~~~v~~v~~sp~~~~l~s~~~d---------~~i~~wd~~~ 149 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTTYKRFVGH---QSEVYSVAFSPDNRQILSAGAE---------REIKLWNILG 149 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCEEEEEECC---CSCEEEEEECSSTTEEEEEETT---------SCEEEEESSS
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCC---CCcEEEEEECCCCCEEEEEcCC---------CEEEEEeccC
Confidence 45566666643 468888988775322 2111 111112222 45566666643 5688888864
Q ss_pred C
Q 011957 258 G 258 (474)
Q Consensus 258 ~ 258 (474)
.
T Consensus 150 ~ 150 (343)
T 2xzm_R 150 E 150 (343)
T ss_dssp C
T ss_pred C
Confidence 4
No 284
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=47.54 E-value=1.7e+02 Score=26.98 Aligned_cols=177 Identities=11% Similarity=-0.057 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCcccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLP 275 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 275 (474)
..+.++|+.+.+-......... -..++.- ++++++.++. ..+.+++..++.-.............
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~----------~~~~~~~~~~~~~~~~~~~~~~~~~v-- 222 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG----------SSLEVISTVTGSCIARKTDFDKNWSL-- 222 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS----------SCEEEEETTTCCEEEEECCCCTTEEE--
T ss_pred CEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc----------eeEEEEEeccCcceeeeecCCCCCCE--
Confidence 5688899988765433211111 1122222 5666666542 35677887776654332221111110
Q ss_pred chhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCc-ceEEEECCEEEE
Q 011957 276 TAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGT-KLSITVEGELYA 354 (474)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~-~~~~~~~~~lyv 354 (474)
......-+++.++.++.++.... -...+|.............. ....... +.+..-++++++
T Consensus 223 -----------~~v~fspdg~~l~~~s~d~~~~~---~i~~~~~~~~~~~~~~~~~~---~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 223 -----------SKINFIADDTVLIAASLKKGKGI---VLTKISIKSGNTSVLRSKQV---TNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp -----------EEEEEEETTEEEEEEEESSSCCE---EEEEEEEETTEEEEEEEEEE---ESSCSCEEEEEECTTSCEEE
T ss_pred -----------EEEEEcCCCCEEEEEecCCccee---EEeecccccceecceeeeee---cCCCCCeEeEEECCCCCceE
Confidence 01223457777776654432211 11455555554433211000 0011111 112344788888
Q ss_pred EcCCCCCCCceEEEEECCCCceEE-eccCCCCCCCCCCCCCeEEE--eeCCEEEEEecCCCCceeE
Q 011957 355 LDPSGALDSAKIKVYDYHDDTWKV-VVGDVPLPNFTDSESPYLLA--GLLGKLHVITNDANHNIAV 417 (474)
Q Consensus 355 ~GG~~~~~~~~v~~yd~~~~~W~~-v~~~~p~~~~~~~r~~~~~~--~~~~~l~v~GG~~~~~~~~ 417 (474)
.|+.+ +.|..||.++.+=.. +. .+ + ......+ .-++++++.|+. ++.+.+
T Consensus 286 sgs~D----~~V~iwd~~~~~~~~~~~----~g---H-~~~V~~v~fSpdg~~laS~S~-D~tvrv 338 (365)
T 4h5i_A 286 LASND----NSIALVKLKDLSMSKIFK----QA---H-SFAITEVTISPDSTYVASVSA-ANTIHI 338 (365)
T ss_dssp EEETT----SCEEEEETTTTEEEEEET----TS---S-SSCEEEEEECTTSCEEEEEET-TSEEEE
T ss_pred EEcCC----CEEEEEECCCCcEEEEec----Cc---c-cCCEEEEEECCCCCEEEEEeC-CCeEEE
Confidence 88743 579999998765322 11 00 1 1112222 347888887773 444444
No 285
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=47.04 E-value=1.8e+02 Score=27.27 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEEE-eCCEEEEeccCCCC
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFW 306 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~ 306 (474)
++.+++.|+.+ ..+.+||..+.+-...-..+...... .+++. -++++.+.|+.++
T Consensus 181 ~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~h~~~v--------------~~~~~s~~~~~l~s~~~dg- 236 (437)
T 3gre_A 181 EKSLLVALTNL---------SRVIIFDIRTLERLQIIENSPRHGAV--------------SSICIDEECCVLILGTTRG- 236 (437)
T ss_dssp SCEEEEEEETT---------SEEEEEETTTCCEEEEEECCGGGCCE--------------EEEEECTTSCEEEEEETTS-
T ss_pred CCCEEEEEeCC---------CeEEEEeCCCCeeeEEEccCCCCCce--------------EEEEECCCCCEEEEEcCCC-
Confidence 46777777743 57999999886543221111011110 22232 2567777676553
Q ss_pred cceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEE-----ECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 307 PFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSIT-----VEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 307 ~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~-----~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
...+||..+++-...-. ... . . ....++. -++.+++.|+. .+.|..||..+.+
T Consensus 237 ------~i~iwd~~~~~~~~~~~-~~~--~-~--~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~ 294 (437)
T 3gre_A 237 ------IIDIWDIRFNVLIRSWS-FGD--H-A--PITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGH 294 (437)
T ss_dssp ------CEEEEETTTTEEEEEEB-CTT--C-E--EEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTE
T ss_pred ------eEEEEEcCCccEEEEEe-cCC--C-C--ceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCc
Confidence 23788888765433211 000 0 0 0010111 13556666653 3578999998765
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=46.71 E-value=2.1e+02 Score=27.59 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=72.5
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
+.||+.-.. +.+.++|+.+++...+... .. .-..+++- +++|||.--.. ......+..++... .+
T Consensus 153 g~Lyv~D~~------~~I~~id~~~g~v~~~~~~-~~-~P~giavd~dG~lyVad~~~-----~~~~~gv~~~~~~~-~~ 218 (433)
T 4hw6_A 153 DDLYWVGQR------DAFRHVDFVNQYVDIKTTN-IG-QCADVNFTLNGDMVVVDDQS-----SDTNTGIYLFTRAS-GF 218 (433)
T ss_dssp CEEEEECBT------SCEEEEETTTTEEEEECCC-CS-CEEEEEECTTCCEEEEECCS-----CTTSEEEEEECGGG-TT
T ss_pred CEEEEEeCC------CCEEEEECCCCEEEEeecC-CC-CccEEEECCCCCEEEEcCCC-----CcccceEEEEECCC-Ce
Confidence 899998421 6899999998887776431 11 11222222 45699885321 01123355555432 22
Q ss_pred E---EccCCCccccccccchhhccccccceeeEEEe--CCEEEEeccCCCCcceeccceEEEcCCCCce-EEcCCCCCCC
Q 011957 261 S---EILSMPFSKAQVLPTAFLADLLKPIATGMSSY--RGRLFVPQSLYFWPFFVDVGGEVYDPDVNSW-VEMPVGMGEG 334 (474)
Q Consensus 261 ~---~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W-~~~~~~~~~~ 334 (474)
. .++.+..| .++++. ++.||+..... -...+||+.+++- +.+......
T Consensus 219 ~~~~~~~~~~~P------------------~giavd~~~G~lyv~d~~~-------~~V~~~d~~~g~~~~~~~~~~~~- 272 (433)
T 4hw6_A 219 TERLSLCNARGA------------------KTCAVHPQNGKIYYTRYHH-------AMISSYDPATGTLTEEEVMMDTK- 272 (433)
T ss_dssp CCEEEEEECSSB------------------CCCEECTTTCCEEECBTTC-------SEEEEECTTTCCEEEEEEECSCC-
T ss_pred eccccccccCCC------------------CEEEEeCCCCeEEEEECCC-------CEEEEEECCCCeEEEEEeccCCC-
Confidence 2 22222222 233432 68899853221 1247899987765 333211111
Q ss_pred CCccccCcceEEEECC-EEEEEcCCCCCCCceEEEEECC
Q 011957 335 WPVRQAGTKLSITVEG-ELYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 335 ~p~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~v~~yd~~ 372 (474)
+.. . ..++.-++ .||+..- ..+.|+++|..
T Consensus 273 -~~~-~--~ia~dpdG~~LYvad~----~~~~I~~~~~d 303 (433)
T 4hw6_A 273 -GSN-F--HIVWHPTGDWAYIIYN----GKHCIYRVDYN 303 (433)
T ss_dssp -SSC-E--EEEECTTSSEEEEEET----TTTEEEEEEBC
T ss_pred -CCc-c--cEEEeCCCCEEEEEeC----CCCEEEEEeCC
Confidence 111 1 11333344 5999853 23588887755
No 287
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=45.60 E-value=2.6e+02 Score=28.44 Aligned_cols=18 Identities=22% Similarity=0.039 Sum_probs=11.8
Q ss_pred eeEEEeCCCCCceeeCCC
Q 011957 107 LSWHALDPLAGRWQRLPP 124 (474)
Q Consensus 107 ~~~~~yd~~~~~W~~l~~ 124 (474)
..++.+|..+++-..+..
T Consensus 91 ~~i~~~d~~~~~~~~l~~ 108 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDP 108 (723)
T ss_dssp SEEEEEESSSCCCEECCC
T ss_pred eeEEEEECCCCceEeccC
Confidence 367788888776555543
No 288
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=45.37 E-value=2.5e+02 Score=28.20 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=36.4
Q ss_pred cceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 196 MRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
...+++.|..+.....+..++.++.-|....- +.++|+.... .+.+.++|.++++=
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---------sn~V~ViD~~t~kl 376 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---------RNKLVVIDTKEGKL 376 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---------GTEEEEEETTTTEE
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC---------CCeEEEEECCCCcE
Confidence 46788888887765555555556665555443 3455555432 36899999998863
No 289
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=44.38 E-value=9 Score=36.49 Aligned_cols=66 Identities=14% Similarity=-0.022 Sum_probs=31.0
Q ss_pred EEECCEEEEEeceecCCCCCccCceEEEEeCCCCc--eEEccCCCccccccccchhhccccccceeeEEEeCCEEEEecc
Q 011957 225 GILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL--WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQS 302 (474)
Q Consensus 225 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG 302 (474)
++.++.||+.+. ...+.++|.++++ |+.-. .+.. ...++.++++|+.++
T Consensus 6 ~v~~~~v~~gs~----------dg~v~a~d~~tG~~~W~~~~---~~~~----------------s~p~~~~g~~~v~~s 56 (369)
T 2hz6_A 6 TLPETLLFVSTL----------DGSLHAVSKRTGSIKWTLKE---DPVL----------------QVPTHVEEPAFLPDP 56 (369)
T ss_dssp --CTTEEEEEET----------TSEEEEEETTTCCEEEEEEC---CCSC----------------CCC-----CCEEECT
T ss_pred eeeCCEEEEEcC----------CCEEEEEECCCCCEEEEecC---CCce----------------ecceEcCCCEEEEeC
Confidence 445677777543 1478999988765 77533 1111 222445677888664
Q ss_pred CCCCcceeccceEEEcCCCC--ceEE
Q 011957 303 LYFWPFFVDVGGEVYDPDVN--SWVE 326 (474)
Q Consensus 303 ~~~~~~~~~~gg~~yd~~t~--~W~~ 326 (474)
.++ ...++|.+++ .|+.
T Consensus 57 ~dg-------~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 57 NDG-------SLYTLGSKNNEGLTKL 75 (369)
T ss_dssp TTC-------CEEEC-----CCSEEC
T ss_pred CCC-------EEEEEECCCCceeeee
Confidence 432 2367887654 4654
No 290
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=43.99 E-value=3e+02 Score=28.67 Aligned_cols=61 Identities=11% Similarity=-0.044 Sum_probs=34.9
Q ss_pred cceEEEEeCCCC--ce--eecCCCCCCcceeeEE-EECCEEEEEeceecCCCCCccCceEEEEeCCC-CceEE
Q 011957 196 MRNVWRYDPVLN--AW--SEVSSMSVGRAYSKIG-ILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT-GLWSE 262 (474)
Q Consensus 196 ~~~v~~yd~~t~--~W--~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t-~~W~~ 262 (474)
.++++++|..+. .+ +.+.+-.... .+... ..++.||+..-.+ ......++.+|..+ ..|+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~-~~s~~~~~g~~l~~~t~~~-----~a~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGV-RYDVQMHGTSHLVILTNEG-----GAVNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTC-CEEEEEETTTEEEEEECTT-----TCTTCEEEEEETTSTTCCCC
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCc-eEEEeeeeCCEEEEEeCCC-----CCCCcEEEEEcCCCccccee
Confidence 578999998875 45 5553211111 11122 2277888875431 01235788899876 67876
No 291
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=43.85 E-value=44 Score=29.21 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=35.3
Q ss_pred eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECC
Q 011957 293 YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYH 372 (474)
Q Consensus 293 ~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~ 372 (474)
.+|++|+|-|... ++++.....+. +..+...||......-++...++++|+|-| +.+|+|+..
T Consensus 27 ~~g~~yfFkg~~~---------Wr~~~~~~~~~--p~~Is~~wpgLP~~IDAA~~~~~~~yfFkG------~~yw~~~~~ 89 (219)
T 1hxn_A 27 NHGATYVFSGSHY---------WRLDTNRDGWH--SWPIAHQWPQGPSTVDAAFSWEDKLYLIQD------TKVYVFLTK 89 (219)
T ss_dssp TTSCEEEEETTEE---------EESSSSSCTTC--CEEGGGTCTTSCSSCSEEEEETTEEEEEET------TEEEEEECS
T ss_pred CCCcEEEEeCCEE---------EEEcCCCCCCC--ceEhhhhccCCCCCccEEEEECCcEEEecC------CEEEEEeCC
Confidence 5899999866332 45554332221 001112222211222335666999999976 578999875
Q ss_pred C
Q 011957 373 D 373 (474)
Q Consensus 373 ~ 373 (474)
+
T Consensus 90 ~ 90 (219)
T 1hxn_A 90 G 90 (219)
T ss_dssp S
T ss_pred C
Confidence 4
No 292
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=43.41 E-value=1.9e+02 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=16.6
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
++.+.+.|+.+ ..+.+||..+.+-
T Consensus 87 ~~~~l~s~s~D---------~~v~lwd~~~~~~ 110 (343)
T 2xzm_R 87 ENCFAISSSWD---------KTLRLWDLRTGTT 110 (343)
T ss_dssp STTEEEEEETT---------SEEEEEETTSSCE
T ss_pred CCCEEEEEcCC---------CcEEEEECCCCcE
Confidence 45566666643 6789999988754
No 293
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=42.08 E-value=2.2e+02 Score=26.63 Aligned_cols=33 Identities=6% Similarity=-0.031 Sum_probs=19.7
Q ss_pred CCEEEEEeceecCCCCCccCceEEEEeCCCCce
Q 011957 228 NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLW 260 (474)
Q Consensus 228 ~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W 260 (474)
++++||..............+++.++|.++.+=
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 578999764211100111346899999987654
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=41.27 E-value=3e+02 Score=27.95 Aligned_cols=172 Identities=16% Similarity=0.077 Sum_probs=88.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCc-eeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNA-WSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++.||+.-- ..+.+.++++.... ++.+-.-.. ..-.++++- +++||+.-.. ...++++|+..
T Consensus 51 ~~~ly~sD~-----~~~~I~r~~~~g~~~~~~v~~~~~-~~P~GlAvD~~~~~ly~~d~~---------~~~I~v~~~dG 115 (619)
T 3s94_A 51 HGLIYWSDV-----SEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWLGEKLYWTDSE---------TNRIEVSNLDG 115 (619)
T ss_dssp TTEEEEEET-----TTTEEEEEEC-----CEEEECSSC-SCEEEEEEETTTTEEEEEETT---------TTEEEEEETTS
T ss_pred CCEEEEEEC-----CCCeEEEEEccCCCceEEEEeCCC-CCcCeEEEEecCCEEEEEeCC---------CCEEEEEECCC
Confidence 788998731 23568888876643 232211111 122334443 7899998532 36899999876
Q ss_pred CceEEc--cCCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCC
Q 011957 258 GLWSEI--LSMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGE 333 (474)
Q Consensus 258 ~~W~~~--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~ 333 (474)
..=+.+ ..+..|+ ++++ .+|.||+..-... -..++.++....-+.+.. ...
T Consensus 116 ~~~~~l~~~~l~~P~------------------~Iavdp~~g~ly~tD~g~~------~~I~r~~~dG~~~~~l~~-~~~ 170 (619)
T 3s94_A 116 SLRKVLFWQELDQPR------------------AIALDPSSGFMYWTDWGEV------PKIERAGMDGSSRFIIIN-SEI 170 (619)
T ss_dssp CSCEEEECSSCSCCC------------------CEEEETTTTEEEEEECSSS------CEEEEEETTSCSCEEEEC-SSC
T ss_pred CCEEEEEeCCCCCCc------------------eEEEecCCCeEEEeccCCC------CEEEEEECCCCceEEEEe-CCC
Confidence 543333 2343333 3344 4689998531100 123666665444333322 111
Q ss_pred CCCccccCcceEEEE--CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 334 GWPVRQAGTKLSITV--EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 334 ~~p~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
.+|. + +++- +++||+.... .+.|+++|++...=+.+.. +.. ...++++..++.||+.--
T Consensus 171 ~~P~---G---lald~~~~~LY~aD~~----~~~I~~~~~dG~~~~~~~~----~~~---~~P~gi~~~~~~ly~td~ 231 (619)
T 3s94_A 171 YWPN---G---LTLDYEEQKLYWADAK----LNFIHKSNLDGTNRQAVVK----GSL---PHPFALTLFEDILYWTDW 231 (619)
T ss_dssp SSEE---E---EEEETTTTEEEEEETT----TCCEEEESSSCCEEC----------------CCCEEESSSEEEEECT
T ss_pred CCCc---E---EEEEccCCEEEEEeCC----CCeEEEecCCCCccEEEEe----CCC---CCceEEEEeCCEEEEecC
Confidence 1121 1 3333 6899999653 4689999997643222211 111 123577888888988754
No 295
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=41.15 E-value=2.5e+02 Score=26.88 Aligned_cols=157 Identities=13% Similarity=0.064 Sum_probs=69.8
Q ss_pred CEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCc
Q 011957 229 NKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWP 307 (474)
Q Consensus 229 ~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~ 307 (474)
+.+++.|+.+ ..+.+||..+..-.. .... ..... .+++ .-+|+..+.|+.++
T Consensus 162 ~~~las~s~D---------g~v~iwD~~~~~~~~-~~~~-~~~~v--------------~~v~wspdg~~lasgs~dg-- 214 (434)
T 2oit_A 162 PSMVAVCLAD---------GSIAVLQVTETVKVC-ATLP-STVAV--------------TSVCWSPKGKQLAVGKQNG-- 214 (434)
T ss_dssp TTEEEEEETT---------SCEEEEEESSSEEEE-EEEC-GGGCE--------------EEEEECTTSSCEEEEETTS--
T ss_pred CCEEEEEECC---------CeEEEEEcCCCccee-eccC-CCCce--------------eEEEEcCCCCEEEEEcCCC--
Confidence 5677777643 568899988763211 1111 11110 2222 23566666666553
Q ss_pred ceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEc---CCCC-CCCceEEEEECCCC------ceE
Q 011957 308 FFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALD---PSGA-LDSAKIKVYDYHDD------TWK 377 (474)
Q Consensus 308 ~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G---G~~~-~~~~~v~~yd~~~~------~W~ 377 (474)
....||+....-..+..+.... +........+....+..|+++ +.+. .....+..||..+. .|.
T Consensus 215 -----~v~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~ 288 (434)
T 2oit_A 215 -----TVVQYLPTLQEKKVIPCPPFYE-SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFV 288 (434)
T ss_dssp -----CEEEECTTCCEEEEECCCTTCC-TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEE
T ss_pred -----cEEEEccCCcccccccCCcccC-CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceE
Confidence 2367888733233333211100 000001112344445555532 2211 12346888887643 455
Q ss_pred EeccCCCCCCCCCCCCC-eEEE-eeCCEEEEEecCCCCceeEEEE
Q 011957 378 VVVGDVPLPNFTDSESP-YLLA-GLLGKLHVITNDANHNIAVLQA 420 (474)
Q Consensus 378 ~v~~~~p~~~~~~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~ 420 (474)
..... .. .....|.. +.+. .-+.++++++......+.+...
T Consensus 289 ~~~~~-~~-~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 289 NFMEP-CY-GSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp ECCCS-SC-CCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred ecccC-CC-CCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 54321 11 11122322 2222 2445677777666666666554
No 296
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=41.04 E-value=2e+02 Score=25.78 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=37.2
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEE---ECCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI---LNNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
++..++.|+.+ ..+.+||..+.+-..+.....+ -.+++. -++++++.|+.+ ..+.+||..+
T Consensus 97 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~ 160 (368)
T 3mmy_A 97 DGSKVFTASCD-----KTAKMWDLSSNQAIQIAQHDAP--VKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRS 160 (368)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECSSC--EEEEEEEECSSCEEEEEEETT---------SEEEEECSSC
T ss_pred CCCEEEEEcCC-----CcEEEEEcCCCCceeeccccCc--eEEEEEEeCCCCCEEEEccCC---------CcEEEEECCC
Confidence 45555566543 4688899988875553321111 122222 256777777753 5789999887
Q ss_pred Cc
Q 011957 258 GL 259 (474)
Q Consensus 258 ~~ 259 (474)
.+
T Consensus 161 ~~ 162 (368)
T 3mmy_A 161 SN 162 (368)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 297
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=40.42 E-value=15 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.1
Q ss_pred CCCCCCCCCCcHHHHHHhhhccCcc
Q 011957 37 DESPRLIPSLPDEISLQILARIPRI 61 (474)
Q Consensus 37 ~~~~~~~~~LPddl~~~il~rlp~~ 61 (474)
.-++..+..||.||-+++|+--.+.
T Consensus 15 ~VD~eVF~~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 15 GVDQEVFKQLPADIQEEILSGKSRE 39 (48)
T ss_dssp TCCGGGTTTSCHHHHHHHTTCCCSC
T ss_pred CCCHHHHHHCcHHHHHHHHhcchHH
Confidence 3456778889999999999865544
No 298
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=39.93 E-value=2.1e+02 Score=25.64 Aligned_cols=125 Identities=7% Similarity=-0.012 Sum_probs=64.7
Q ss_pred eeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccccchhhccccccce
Q 011957 209 WSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVLPTAFLADLLKPIA 287 (474)
Q Consensus 209 W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~ 287 (474)
.+.+..+|.+......+.- +++||+.--. ...+.+||+... .......+. .-
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~---------~~~I~~~d~~g~-~~~~~~~~~--~p--------------- 74 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHE---------VGEIVSITPDGN-QQIHATVEG--KV--------------- 74 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETT---------TTEEEEECTTCC-EEEEEECSS--EE---------------
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCC---------CCeEEEECCCCc-eEEEEeCCC--Cc---------------
Confidence 3333334433333334432 5778887532 257889998764 332222221 11
Q ss_pred eeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceE
Q 011957 288 TGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKI 366 (474)
Q Consensus 288 ~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v 366 (474)
++++. -+|++|+....... ....+||+.+++.+.+.. ... .+.-...+...++.+|+... ..+.+
T Consensus 75 ~gia~~~dG~l~vad~~~~~-----~~v~~~d~~~g~~~~~~~-~~~----~~~~~g~~~~~~~~~~v~d~----~~g~i 140 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADS-----IPVVSLVKSDGTVETLLT-LPD----AIFLNGITPLSDTQYLTADS----YRGAI 140 (306)
T ss_dssp EEEEECTTSCEEEEEECTTS-----CEEEEEECTTSCEEEEEE-CTT----CSCEEEEEESSSSEEEEEET----TTTEE
T ss_pred eeEEEcCCCcEEEEeccCCc-----ceEEEEcCCCCeEEEEEe-CCC----ccccCcccccCCCcEEEEEC----CCCeE
Confidence 44443 36789986422100 124678888888776543 111 11111112344566787652 23589
Q ss_pred EEEECCCC
Q 011957 367 KVYDYHDD 374 (474)
Q Consensus 367 ~~yd~~~~ 374 (474)
+++|+.+.
T Consensus 141 ~~~d~~~~ 148 (306)
T 2p4o_A 141 WLIDVVQP 148 (306)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 99998864
No 299
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=39.14 E-value=3.3e+02 Score=27.84 Aligned_cols=102 Identities=12% Similarity=0.020 Sum_probs=58.5
Q ss_pred ceEEEEeCCCC--ceEEccCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCC---
Q 011957 248 QSAEVFDPRTG--LWSEILSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVN--- 322 (474)
Q Consensus 248 ~~~~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~--- 322 (474)
+.++++|..+. .|+.+..-..... ......+++||+....+... .....+|+.+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~----------------~~~~~~g~~l~~~t~~~~~~----~~l~~~d~~~~~~~ 318 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADV----------------SLVDNKGSTLYLLTNRDAPN----RRLVTVDAANPGPA 318 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCE----------------EEEEEETTEEEEEECTTCTT----CEEEEEETTSCCGG
T ss_pred cEEEEEECCCCCCceEEEeCCCCceE----------------EEEeccCCEEEEEECCCCCC----CEEEEEeCCCCCcc
Confidence 68999998765 6777653211111 12334578899877644321 22367777653
Q ss_pred ceEEcCCCCCCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 323 SWVEMPVGMGEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 323 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
.|+.+.+... ... .....++.|++..-.+ ....|+.+|++......+
T Consensus 319 ~~~~l~~~~~----~~~----~~s~~g~~lv~~~~~~--g~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 319 HWRDLIPERQ----QVL----TVHSGSGYLFAEYMVD--ATARVEQFDYEGKRVREV 365 (693)
T ss_dssp GCEEEECCCS----SCE----EEEEETTEEEEEEEET--TEEEEEEECTTSCEEEEE
T ss_pred ccEEEecCCC----CEE----EEEEECCEEEEEEEEC--CeeEEEEEECCCCeeEEe
Confidence 4887654221 111 2556677776653322 134789999987665555
No 300
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=37.65 E-value=1.1e+02 Score=29.73 Aligned_cols=78 Identities=15% Similarity=-0.033 Sum_probs=42.4
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRT 257 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t 257 (474)
....+||.-....... +.+.++|+.+++= +..++.+... .++.- +.++||.--...........+.+.++|+.+
T Consensus 83 ~~~~vyV~n~~~~~~~-~~VsVID~~t~~v--v~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 83 DARRVYIQDPAHFAAI-TQQFVIDGSTGRI--LGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CTTEEEEEECTTTCSS-EEEEEEETTTTEE--EEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCEEEEECCCcCCCC-CeEEEEECCCCEE--EEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 3457888864321111 7899999998763 3333333332 23322 567888742110000000136799999999
Q ss_pred CceE
Q 011957 258 GLWS 261 (474)
Q Consensus 258 ~~W~ 261 (474)
.+-.
T Consensus 159 ~~vv 162 (426)
T 3c75_H 159 FLPI 162 (426)
T ss_dssp CCEE
T ss_pred CcEE
Confidence 8754
No 301
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=35.60 E-value=3.5e+02 Score=27.03 Aligned_cols=147 Identities=9% Similarity=0.043 Sum_probs=73.0
Q ss_pred EEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceE
Q 011957 184 LYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWS 261 (474)
Q Consensus 184 lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~ 261 (474)
+++.|+.+ ..+.+||..+.+... .+........++.+ ++++++.|+.+ ..+.+||..+++-.
T Consensus 162 ~l~s~s~D-----~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D---------~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 162 RIISGSDD-----NTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGD---------GTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEEETT-----SCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEE
T ss_pred EEEEEeCC-----CeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECC---------CcEEEEECCCCcEe
Confidence 46666654 356777866544322 11111111122222 57777777753 57889998877644
Q ss_pred Ecc-CC-Cc--cccccccchhhccccccceeeEEE-eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCC
Q 011957 262 EIL-SM-PF--SKAQVLPTAFLADLLKPIATGMSS-YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWP 336 (474)
Q Consensus 262 ~~~-~~-p~--~r~~~~~~~~~~~~~~~~~~~~~~-~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p 336 (474)
..- .. .. ..... ..+++. -+++..+.|+.++ ....+|..+.+....-. ... .
T Consensus 226 ~~~~~~~~~~~~h~~~-------------V~~v~~spdg~~l~s~s~D~-------~v~lWd~~~~~~~~~~~-~~~--~ 282 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGS-------------VFGLTWSPDGTKIASASADK-------TIKIWNVATLKVEKTIP-VGT--R 282 (611)
T ss_dssp EECBCTTSSSCSSSSC-------------EEEEEECTTSSEEEEEETTS-------EEEEEETTTTEEEEEEE-CCS--S
T ss_pred eeeccccccccccCCC-------------EEEEEECCCCCEEEEEeCCC-------eEEEEeCCCCceeeeec-CCC--C
Confidence 321 10 00 01110 023332 3677777676553 23788888876654221 110 0
Q ss_pred ccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 337 VRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.... ...+..++..++.++. .+.+..||+++.+
T Consensus 283 -~~~~-~~~~~~~~~~l~s~s~----d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 283 -IEDQ-QLGIIWTKQALVSISA----NGFINFVNPELGS 315 (611)
T ss_dssp -GGGC-EEEEEECSSCEEEEET----TCCEEEEETTTTE
T ss_pred -ccce-eEEEEEcCCEEEEEeC----CCcEEEEeCCCCC
Confidence 1111 1133446666666553 3468888988765
No 302
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=34.39 E-value=3.4e+02 Score=29.96 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=41.5
Q ss_pred EEEcCCCCceEEcCCCCCCCCCccccCcceEEEEC------CEEEEEcCCCC---CCCceEEEEECCC--CceEEeccCC
Q 011957 315 EVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITVE------GELYALDPSGA---LDSAKIKVYDYHD--DTWKVVVGDV 383 (474)
Q Consensus 315 ~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~~------~~lyv~GG~~~---~~~~~v~~yd~~~--~~W~~v~~~~ 383 (474)
.+|....+.|+.... ....-.....|.+ +++.| ..|+++|.-.. ...+.+++|.... ..|.... .+
T Consensus 415 ~i~~~~~~~~~~~~~-~~g~~~gs~fG~s-va~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~-~l 491 (1095)
T 3k6s_A 415 VIFTQVSRQWRMKAE-VTGTQIGSYFGAS-LCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDA-VL 491 (1095)
T ss_dssp EEEECCTTTCCEEEE-ECCSSTTSCTTSC-EEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCS-SC
T ss_pred EEEEecCCcceEEee-cccCcccCcCCce-EEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeE-Ee
Confidence 577777778887543 1111122344554 44432 35778875321 3356888886543 4586432 11
Q ss_pred C-CCCCCCCCCCeEEEee
Q 011957 384 P-LPNFTDSESPYLLAGL 400 (474)
Q Consensus 384 p-~~~~~~~r~~~~~~~~ 400 (474)
. ....+..+.+.+++.+
T Consensus 492 ~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 492 YGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp CCCCSCSSCCBTSCEEEE
T ss_pred ecccCCccccCccceEee
Confidence 1 1111245555666553
No 303
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=33.90 E-value=1.3e+02 Score=27.87 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=39.6
Q ss_pred CEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 182 GCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 182 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
..+||.-........+.+++||+.+.+-. ..++..... .++.. +..+|+..-...........+.+.+||+.+.+
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFL--GMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEE--EEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEE--EEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 46777643221122458999999887643 233333322 23332 46899876432110000113568899998755
No 304
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=33.34 E-value=3.4e+02 Score=26.20 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=63.1
Q ss_pred eeEEEeCCEEEEeccCCCCcceeccceEEE----cCCCCce-EEcCCCCCCCCCccccCcceEEEECCEEEEEc-CCCC-
Q 011957 288 TGMSSYRGRLFVPQSLYFWPFFVDVGGEVY----DPDVNSW-VEMPVGMGEGWPVRQAGTKLSITVEGELYALD-PSGA- 360 (474)
Q Consensus 288 ~~~~~~~~~iyv~gG~~~~~~~~~~gg~~y----d~~t~~W-~~~~~~~~~~~p~~~~~~~~~~~~~~~lyv~G-G~~~- 360 (474)
|+.+.+++.=|++|=.++...-..+|...| +.....= ++++... . +.+.-.++-.++|.||+.- |...
T Consensus 287 HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey----~-~~AsEPCvkyYdgvLyLtTRgt~~~ 361 (670)
T 3ju4_A 287 HSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEY----E-PDASEPCIKYYDGVLYLITRGTRGD 361 (670)
T ss_dssp EEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGG----C-TTEEEEEEEEETTEEEEEEEESCTT
T ss_pred eeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhh----c-cccccchhhhhCCEEEEEecCcCCC
Confidence 788888888888776555433332333333 2222222 2333311 1 1122233678999999984 2222
Q ss_pred CCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEec
Q 011957 361 LDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITN 409 (474)
Q Consensus 361 ~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG 409 (474)
.....+.+-+.....|+.+. .|. .. .....-.+..++.||+||-
T Consensus 362 ~~GS~L~rs~d~Gq~w~slr--fp~-nv--HhtnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 362 RLGSSLHRSRDIGQTWESLR--FPH-NV--HHTTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp SCCCEEEEESSTTSSCEEEE--CTT-CC--CSSCCCEEEETTEEEEEEE
T ss_pred CCcceeeeecccCCchhhee--ccc-cc--cccCCCcceeCCEEEEEec
Confidence 22346777777778899985 231 11 1223446678999999996
No 305
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=33.10 E-value=1.1e+02 Score=28.48 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=42.3
Q ss_pred eCCEEEEEcCcCC-----CcccceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEE
Q 011957 180 VDGCLYVLGGFSR-----ALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 180 ~~~~lyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
-++++|+....+. ....+.++++|..+.+ .+..++.+. -.+++.. +..||+.++ +++.+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~-----------~~v~v 329 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG-----------GNVNV 329 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS-----------SCEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC-----------CeEEE
Confidence 3588999753111 1235689999998875 344444444 3444443 456776542 57889
Q ss_pred EeCCCCceEEcc
Q 011957 253 FDPRTGLWSEIL 264 (474)
Q Consensus 253 yd~~t~~W~~~~ 264 (474)
||.++.+=+.+.
T Consensus 330 ~D~~t~~l~~~~ 341 (361)
T 2oiz_A 330 YDISQPEPKLLR 341 (361)
T ss_dssp EECSSSSCEEEE
T ss_pred EECCCCcceeeE
Confidence 999886224443
No 306
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=30.73 E-value=1.2e+02 Score=30.92 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=47.1
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCcceeeEEEE----CCEEEEEeceecC--C------CCCccCc
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL----NNKLYAVGGVTRG--P------GGLTPLQ 248 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~--~------~~~~~~~ 248 (474)
+..+||.-. ..+.+.+.|+.+.+-.++-.+|....-|.++.. ++++|+.+.+... . ......+
T Consensus 101 G~~lfVnd~-----~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 101 GRFLFMNDK-----ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEET-----TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCEEEEEcC-----CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 446888432 246799999999886665467766666777653 5788888643210 0 0123345
Q ss_pred eEEEEeCCCCc
Q 011957 249 SAEVFDPRTGL 259 (474)
Q Consensus 249 ~~~~yd~~t~~ 259 (474)
.+-+.|.++.+
T Consensus 176 ~vtvID~~t~~ 186 (595)
T 1fwx_A 176 VFTAVDADKWE 186 (595)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEECCCCe
Confidence 78888998764
No 307
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=29.01 E-value=3.9e+02 Score=25.56 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=31.9
Q ss_pred ECCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCC---CC-------CCCCCCCCeEEEee--CCEEEEEec
Q 011957 348 VEGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVP---LP-------NFTDSESPYLLAGL--LGKLHVITN 409 (474)
Q Consensus 348 ~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p---~~-------~~~~~r~~~~~~~~--~~~l~v~GG 409 (474)
.++.|||.... .+.|.++|++ .....+.+... .+ ....-....+++.- ++.|||.--
T Consensus 353 ~~g~lyvaD~~----n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 353 DEYDFYFCDRD----SHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp CCEEEEEEETT----TTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred CCCcEEEEECC----CCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 46789998642 3589999974 45555543211 00 00011224566665 788888654
No 308
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=28.70 E-value=84 Score=30.05 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=43.1
Q ss_pred eCCEEEEEcC---cC-CCcccceEEEEeCCCCceeecCCCCCCcceeeEEE-ECC--EEEEEeceecCCCCCccCceEEE
Q 011957 180 VDGCLYVLGG---FS-RALAMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGI-LNN--KLYAVGGVTRGPGGLTPLQSAEV 252 (474)
Q Consensus 180 ~~~~lyv~GG---~~-~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~--~lyv~GG~~~~~~~~~~~~~~~~ 252 (474)
-++++||.-+ .. .....+.++++|+.|++-.. ..+.+..-.++++ -++ .||+.-+. .+++.+
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--~i~vg~~~~~lavs~D~~~~ly~tn~~---------~~~VsV 358 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEMGHEIDSINVSQDEKPLLYALSTG---------DKTLYI 358 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEEEEEECEEEECSSSSCEEEEEETT---------TTEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE--EEECCCCcceEEECCCCCeEEEEEcCC---------CCeEEE
Confidence 4789999732 11 12345889999999987433 2333332223333 244 57776442 368999
Q ss_pred EeCCCCceE
Q 011957 253 FDPRTGLWS 261 (474)
Q Consensus 253 yd~~t~~W~ 261 (474)
||..+++-.
T Consensus 359 iD~~t~k~~ 367 (386)
T 3sjl_D 359 HDAESGEEL 367 (386)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcEE
Confidence 999988754
No 309
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.60 E-value=2.7e+02 Score=28.96 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=77.6
Q ss_pred cceEEEEeCCC--CceeecCCCCCCcceeeEEEECCEEEEEeceecCCC-CCccCceEEEEeCCC--------CceEE-c
Q 011957 196 MRNVWRYDPVL--NAWSEVSSMSVGRAYSKIGILNNKLYAVGGVTRGPG-GLTPLQSAEVFDPRT--------GLWSE-I 263 (474)
Q Consensus 196 ~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~~~~yd~~t--------~~W~~-~ 263 (474)
.++++..|... .+|.++ .+ ++...-....++++|+....+-... ...+...+...|..+ ..|+. +
T Consensus 268 ~~~~~~~~~~~~~~~~~~l-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKI-NM--PSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp CEEEEEEECSSSSCEEEEC-CS--CTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred ceeEEEEcCCCCCCcceEe-ec--CCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 47788887653 567777 22 3322224567999999764321000 011345677888654 46886 4
Q ss_pred cCCCccccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC-CCCCCCCCccccCc
Q 011957 264 LSMPFSKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP-VGMGEGWPVRQAGT 342 (474)
Q Consensus 264 ~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~-~~~~~~~p~~~~~~ 342 (474)
++-... .- ..+...++.||+..-.++. ....++|+.++.|.... ... |.. +.
T Consensus 345 ~~~~~~-~l---------------~~~~~~~~~l~~~~~~~~~-----~~l~~~~~~~g~~~~~~~i~l----p~~--~~ 397 (711)
T 4hvt_A 345 TPTANE-VF---------------NFISTTKDRVFLATYDNVV-----AKVVTFTLENEQWTKPVVLKL----PYQ--NA 397 (711)
T ss_dssp CCCTTE-EE---------------EEEEECSSCEEEEEEETTE-----EEEEEECEETTEECCCEEECC----CST--TC
T ss_pred CCCCCC-eE---------------EEEEEECCEEEEEEEECCE-----EEEEEEECCCCceEEEeccCC----CCC--eE
Confidence 432211 11 3445556777764321111 11267888888884322 111 211 11
Q ss_pred ceEEE--E-CCEEEEEcCCCCCCCceEEEEECCCCceEEec
Q 011957 343 KLSIT--V-EGELYALDPSGALDSAKIKVYDYHDDTWKVVV 380 (474)
Q Consensus 343 ~~~~~--~-~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~ 380 (474)
..... . ++.+++.. .+......++.||.. ++++.+.
T Consensus 398 ~~~~~~~~~~~~~~~~~-ss~~~P~~~~~~d~~-~~~~~l~ 436 (711)
T 4hvt_A 398 IFGMSSYEEEEEALITI-ENSIVPPTIYLWVKT-HELKIIR 436 (711)
T ss_dssp EEEEECCTTCSCEEEEE-ECSSSCCEEEEECTT-SCEEEEE
T ss_pred EEEEeecCcCCEEEEEE-ecCCCCCEEEEEeCC-CcEEEEe
Confidence 10111 2 23444432 223345689999988 7787775
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=27.41 E-value=3.5e+02 Score=24.53 Aligned_cols=144 Identities=11% Similarity=-0.017 Sum_probs=80.5
Q ss_pred eCCEEEEEcCcCCCcccceEEEEeCCCCceeec--CCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 180 VDGCLYVLGGFSRALAMRNVWRYDPVLNAWSEV--SSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 180 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
.++.||+.-.. .+.++++|+....-+.+ ..+..|+ ..++. ++.||+.--. ....++++++
T Consensus 89 ~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~--------~~~~I~r~~~ 152 (318)
T 3sov_A 89 LGEKLYWTDSE-----TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWG--------EVPKIERAGM 152 (318)
T ss_dssp TTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECS--------SSCEEEEEET
T ss_pred CCCeEEEEECC-----CCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecC--------CCCEEEEEEc
Confidence 47899997432 35788999876543333 2333332 33333 5899987411 1357899988
Q ss_pred CCCceEEcc--CCCccccccccchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCC
Q 011957 256 RTGLWSEIL--SMPFSKAQVLPTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGM 331 (474)
Q Consensus 256 ~t~~W~~~~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~ 331 (474)
....=+.+. .+..| .++++ .+++||+.-... -..+++|+....=+.+.. .
T Consensus 153 dG~~~~~~~~~~l~~P------------------nglavd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~-~ 206 (318)
T 3sov_A 153 DGSSRFIIINSEIYWP------------------NGLTLDYEEQKLYWADAKL-------NFIHKSNLDGTNRQAVVK-G 206 (318)
T ss_dssp TSCSCEEEECSSCSCE------------------EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEC-S
T ss_pred CCCCeEEEEECCCCCc------------------cEEEEeccCCEEEEEECCC-------CEEEEEcCCCCceEEEec-C
Confidence 653323221 22211 34444 378999964322 223778876543333322 1
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCc
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDT 375 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~ 375 (474)
.. ..+ .+ +++.++.||+..- ....|.++|+.+.+
T Consensus 207 ~~--~~P-~g---lav~~~~lywtd~----~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 207 SL--PHP-FA---LTLFEDILYWTDW----STHSILACNKYTGE 240 (318)
T ss_dssp CC--SCE-EE---EEEETTEEEEEET----TTTEEEEEETTTCC
T ss_pred CC--CCc-eE---EEEeCCEEEEEec----CCCeEEEEECCCCC
Confidence 11 111 22 6678899999853 34689999996654
No 311
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.14 E-value=4.3e+02 Score=27.39 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=40.1
Q ss_pred CCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCc
Q 011957 206 LNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPF 268 (474)
Q Consensus 206 t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 268 (474)
-.+|+.+..+|.....+.++.. ++.+|+..+-............+++++-...+|+.+.+.|.
T Consensus 231 G~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~ 294 (737)
T 2cn3_A 231 GVTWKAVPGQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY 294 (737)
T ss_dssp TSCCEECTTCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCT
T ss_pred CCceEECCCCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCC
Confidence 4579999877765444444433 68999876532110000123578899999999999987654
No 312
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=26.41 E-value=3.8e+02 Score=24.55 Aligned_cols=151 Identities=13% Similarity=-0.017 Sum_probs=74.7
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCceeecCCCCCCccee--eEEEECCEEEEEeceecCCCCCccCceEEEEeCCCC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWSEVSSMSVGRAYS--KIGILNNKLYAVGGVTRGPGGLTPLQSAEVFDPRTG 258 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~ 258 (474)
++++++.++. +.+.+++..+.+-............. ....-+++.++.++.+.. ....+..+|....
T Consensus 187 dg~~l~s~s~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~-----~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 187 DGKVVAYITG------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG-----KGIVLTKISIKSG 255 (365)
T ss_dssp TSSEEEEECS------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS-----CCEEEEEEEEETT
T ss_pred CCceEEeccc------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc-----ceeEEeecccccc
Confidence 5666666542 34667777776644322221111111 222337888888775421 1235666777666
Q ss_pred ceEEccC--CCccccccccchhhccccccceeeEE-EeCCEEEEeccCCCCcceeccceEEEcCCCCceEE-cCCCCCCC
Q 011957 259 LWSEILS--MPFSKAQVLPTAFLADLLKPIATGMS-SYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVE-MPVGMGEG 334 (474)
Q Consensus 259 ~W~~~~~--~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~-~~~~~~~~ 334 (474)
....... +...... +.+++ .-++++.+.|+.++ ...+||.++.+=.. +.. ...
T Consensus 256 ~~~~~~~~~~~~~~~~--------------V~~~~~Spdg~~lasgs~D~-------~V~iwd~~~~~~~~~~~~-gH~- 312 (365)
T 4h5i_A 256 NTSVLRSKQVTNRFKG--------------ITSMDVDMKGELAVLASNDN-------SIALVKLKDLSMSKIFKQ-AHS- 312 (365)
T ss_dssp EEEEEEEEEEESSCSC--------------EEEEEECTTSCEEEEEETTS-------CEEEEETTTTEEEEEETT-SSS-
T ss_pred eecceeeeeecCCCCC--------------eEeEEECCCCCceEEEcCCC-------EEEEEECCCCcEEEEecC-ccc-
Confidence 5543321 1111111 02222 34788888777653 34788988765322 211 100
Q ss_pred CCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCC
Q 011957 335 WPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHD 373 (474)
Q Consensus 335 ~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~ 373 (474)
... ...+..-++++++-|+. .+.|.+||+..
T Consensus 313 --~~V--~~v~fSpdg~~laS~S~----D~tvrvw~ip~ 343 (365)
T 4h5i_A 313 --FAI--TEVTISPDSTYVASVSA----ANTIHIIKLPL 343 (365)
T ss_dssp --SCE--EEEEECTTSCEEEEEET----TSEEEEEECCT
T ss_pred --CCE--EEEEECCCCCEEEEEeC----CCeEEEEEcCC
Confidence 000 11123346787777764 35788888653
No 313
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=26.12 E-value=4e+02 Score=24.71 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCCCceEEEEECCCCce
Q 011957 351 ELYALDPSGALDSAKIKVYDYHDDTW 376 (474)
Q Consensus 351 ~lyv~GG~~~~~~~~v~~yd~~~~~W 376 (474)
.+++.|+. .+.|..||..+.+-
T Consensus 240 ~~l~s~~~----dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSS----KGTIRLCDMRASAL 261 (447)
T ss_dssp TEEEEEET----TSCEEEEETTTCSS
T ss_pred cEEEEEeC----CCeEEEEECcCCcc
Confidence 67777764 35799999988764
No 314
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=24.72 E-value=4.6e+02 Score=24.96 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=36.9
Q ss_pred CCEEEEEcCcCCCcccceEEEEeCCCCcee---ecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeC
Q 011957 181 DGCLYVLGGFSRALAMRNVWRYDPVLNAWS---EVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDP 255 (474)
Q Consensus 181 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~ 255 (474)
++.||+...... .....+..++... .+. .++.+.. -+.+++. ++.||+.--. ...+++||+
T Consensus 190 G~~lyvad~~~~-~~~~~v~~~~~~g-~~~~~~~l~~~~~---p~giavdp~~g~lyv~d~~---------~~~V~~~~~ 255 (430)
T 3tc9_A 190 ADSMIITNDQNN-NDRPNNYILTRES-GFKVITELTKGQN---CNGAETHPINGELYFNSWN---------AGQVFRYDF 255 (430)
T ss_dssp SSEEEEEECCSC-TTSEEEEEEEGGG-TSCSEEEEEECSS---CCCEEECTTTCCEEEEETT---------TTEEEEEET
T ss_pred CCEEEEEeCCCC-cccceEEEEeCCC-ceeeeeeeccCCC---ceEEEEeCCCCEEEEEECC---------CCEEEEEEC
Confidence 345998864322 2223456666533 333 3332222 2334443 5789987431 257999999
Q ss_pred CCCceEEc
Q 011957 256 RTGLWSEI 263 (474)
Q Consensus 256 ~t~~W~~~ 263 (474)
.+..-..+
T Consensus 256 ~~~~~~~~ 263 (430)
T 3tc9_A 256 TTQETTPL 263 (430)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 87765333
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=24.47 E-value=4.3e+02 Score=24.52 Aligned_cols=174 Identities=9% Similarity=0.029 Sum_probs=83.1
Q ss_pred cceEEEEeCC---CCc--eee-cCCCCCC-------cc-eeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCc
Q 011957 196 MRNVWRYDPV---LNA--WSE-VSSMSVG-------RA-YSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGL 259 (474)
Q Consensus 196 ~~~v~~yd~~---t~~--W~~-~~~~p~~-------r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~ 259 (474)
.+.+.+||+. +++ |.. ++..... +. .+.-.++ +|.+||.+... ...++++|+....
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~--------~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG--------MPAIARVSADGKT 170 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES--------SCEEEEECTTSCC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC--------CCeEEEEeCCCCE
Confidence 4679999988 553 443 2221111 22 2333334 58999987642 2568889987542
Q ss_pred ---eEEccCCCccccccccchhhccccccceeeEEEe-CC-EEEEeccCCCCcceeccceEEEcCCCCceEEcCCC---C
Q 011957 260 ---WSEILSMPFSKAQVLPTAFLADLLKPIATGMSSY-RG-RLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVG---M 331 (474)
Q Consensus 260 ---W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~---~ 331 (474)
|-.-.+....+.+. .+++.. ++ .|++..+ .+ ...+||+.+-...+++.. .
T Consensus 171 ~~~~~~~~~~~~~~~G~--------------nGIv~~pdg~~Liv~~~-~g-------~L~~fD~~~pv~~~v~~~~~G~ 228 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGY--------------SGITFDPHSNKLIAFGG-PR-------ALTAFDVSKPYAWPEPVKINGD 228 (334)
T ss_dssp EEEEEECCCCSSSCCSC--------------SEEEEETTTTEEEEESS-SS-------SEEEEECSSSSCCCEECEESSC
T ss_pred EeeeeecCCCcccccCc--------------ceEEEeCCCCEEEEEcC-CC-------eEEEEcCCCCcceeecccccCC
Confidence 43322222223221 466665 34 5666554 32 126788774322122210 0
Q ss_pred CCCCCccccCcceEEEECCEEEEEcCCCCCCCceEEEEECCCCceEEecc--CCCCCCCCCCCCCeEEE-e----eCCEE
Q 011957 332 GEGWPVRQAGTKLSITVEGELYALDPSGALDSAKIKVYDYHDDTWKVVVG--DVPLPNFTDSESPYLLA-G----LLGKL 404 (474)
Q Consensus 332 ~~~~p~~~~~~~~~~~~~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~--~~p~~~~~~~r~~~~~~-~----~~~~l 404 (474)
....... .+. .....+|++.++.-. .+.++.+--..+ |+.... ..|.+ +. .+. .+.+ . .+++|
T Consensus 229 ~~~~~~~-dgi-lp~~~~G~vllV~~~----~~~~~~l~S~Dg-W~sa~~~g~~~~~-~~-~~g-~tt~t~~~~~~~~~i 298 (334)
T 2p9w_A 229 FGTLSGT-EKI-VTVPVGNESVLVGAR----APYAISFRSWDN-WKSANIKKTKRSE-LQ-NSG-FTAVADYYQGSEQGL 298 (334)
T ss_dssp CCCCTTE-EEE-EEEEETTEEEEEEEE----TTEEEEEECSST-TSEEEEEEEECGG-GG-SSC-EEEEEEEEETTEEEE
T ss_pred cccccCc-ccc-cccccCCEEEEEEcC----CCCEEEEECCCC-cceeEEeeeecCc-cc-cCc-eeEEEEeccccCCeE
Confidence 0000111 111 134579998665431 123344433444 987532 23321 11 222 3333 3 67899
Q ss_pred EEEec
Q 011957 405 HVITN 409 (474)
Q Consensus 405 ~v~GG 409 (474)
|++.+
T Consensus 299 Yvv~~ 303 (334)
T 2p9w_A 299 YAVSA 303 (334)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 99886
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=24.33 E-value=5.7e+02 Score=25.91 Aligned_cols=140 Identities=13% Similarity=0.074 Sum_probs=77.1
Q ss_pred ceEEEEeCCCCceeecCCCCCCcceeeEEEE--CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCCCccccccc
Q 011957 197 RNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL--NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSMPFSKAQVL 274 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~ 274 (474)
.++.+.|+.+..=..+-+++.-+.-.+++.. +++||+.-.. ...+.++++.....+.+..... ..
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~---------~~~I~r~~~~g~~~~~v~~~g~--~~-- 81 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS---------LKTISRAFMNGSALEHVVEFGL--DY-- 81 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSCSCEEEECSSC--SC--
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC---------CCeEEEEECCCCCcEEEEeCCC--CC--
Confidence 4566777766543333333322333444444 6899998542 3678889987766665533211 11
Q ss_pred cchhhccccccceeeEEE--eCCEEEEeccCCCCcceeccceEEEcCCCCceEEcC-CCCCCCCCccccCcceEEEE--C
Q 011957 275 PTAFLADLLKPIATGMSS--YRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMP-VGMGEGWPVRQAGTKLSITV--E 349 (474)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~--~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~-~~~~~~~p~~~~~~~~~~~~--~ 349 (474)
| .++++ .+++||+.-... -..+++|+....=+.+. ..+ ..++ + +++. +
T Consensus 82 P------------~GlAvD~~~~~LY~tD~~~-------~~I~v~~~dG~~~~~l~~~~l----~~P~-~---iavdp~~ 134 (628)
T 4a0p_A 82 P------------EGMAVDWLGKNLYWADTGT-------NRIEVSKLDGQHRQVLVWKDL----DSPR-A---LALDPAE 134 (628)
T ss_dssp C------------CEEEEETTTTEEEEEETTT-------TEEEEEETTSTTCEEEECSSC----CCEE-E---EEEETTT
T ss_pred c------------ceEEEEeCCCEEEEEECCC-------CEEEEEecCCCcEEEEEeCCC----CCcc-c---EEEccCC
Confidence 0 34444 578999964322 22378887654333332 111 1121 1 4443 6
Q ss_pred CEEEEEcCCCCCCCceEEEEECCCCceEEe
Q 011957 350 GELYALDPSGALDSAKIKVYDYHDDTWKVV 379 (474)
Q Consensus 350 ~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v 379 (474)
|.||+..-. ....|++.+++...-+.+
T Consensus 135 G~lY~tD~g---~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 135 GFMYWTEWG---GKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp TEEEEEECS---SSCEEEEEETTSCSCEEE
T ss_pred CeEEEeCCC---CCCEEEEEeCCCCceEEE
Confidence 899998621 135899999887765554
No 317
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=23.42 E-value=3.9e+02 Score=23.73 Aligned_cols=62 Identities=16% Similarity=-0.053 Sum_probs=34.5
Q ss_pred ccceEEEEeCCCCceeecCCCCCCcceeeEEEE-CCEEEEEeceecCCCCCccCceEEEEeCCCCceEEccCC
Q 011957 195 AMRNVWRYDPVLNAWSEVSSMSVGRAYSKIGIL-NNKLYAVGGVTRGPGGLTPLQSAEVFDPRTGLWSEILSM 266 (474)
Q Consensus 195 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 266 (474)
....++++|..+.+-+.+ .. ......- +++..++...... .....++++|..+++...+...
T Consensus 41 ~~~~l~~~d~~~~~~~~l-----~~-~~~~~~SpDg~~la~~~~~~~----~~~~~l~~~~~~~g~~~~l~~~ 103 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI-----EN-ATMPRISPDGKKIAFMRANEE----KKVSEIWVADLETLSSKKILEA 103 (347)
T ss_dssp EEEEEEEEETTTCCEEEE-----ES-CEEEEECTTSSEEEEEEEETT----TTEEEEEEEETTTTEEEEEEEE
T ss_pred ccceEEEEeCCCCceEEc-----cc-CCCeEECCCCCEEEEEEeccC----CCcceEEEEECCCCceEEEEcC
Confidence 357899999998876665 11 1112222 4543333332210 1134688999988877666443
No 318
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=22.41 E-value=4e+02 Score=24.95 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=26.5
Q ss_pred cceEEEE--eCCCCceeecCCC--C--CC-cceeeEEEE----CCEEEEEec
Q 011957 196 MRNVWRY--DPVLNAWSEVSSM--S--VG-RAYSKIGIL----NNKLYAVGG 236 (474)
Q Consensus 196 ~~~v~~y--d~~t~~W~~~~~~--p--~~-r~~~~~~~~----~~~lyv~GG 236 (474)
.+.+.+| ||.+++++.+... | .. +.-+++|.+ .+++|++-.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~ 149 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT 149 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE
Confidence 3566666 8899999998654 4 33 555666664 356666644
No 319
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=22.29 E-value=4e+02 Score=27.68 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCEEEEEcCcCC----CcccceEEEEeCCCCceeecCCCCCC----cceeeEEEE----CCEEEEEec
Q 011957 181 DGCLYVLGGFSR----ALAMRNVWRYDPVLNAWSEVSSMSVG----RAYSKIGIL----NNKLYAVGG 236 (474)
Q Consensus 181 ~~~lyv~GG~~~----~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~----~~~lyv~GG 236 (474)
++.||+..+-.. ......+++++-...+|+.+.+.|.. +++++...+ .+.||+.+.
T Consensus 254 ~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 254 NGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp TSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEE
T ss_pred CCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEec
Confidence 788998754211 11346799999999999998776542 444444444 267888764
No 320
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=21.79 E-value=8.4e+02 Score=26.95 Aligned_cols=185 Identities=12% Similarity=0.074 Sum_probs=94.5
Q ss_pred ceEEEEeCCCCceeecCCC--CCCcceeeEEEE--C---CEEEEEeceecCCC-CCccCceEEEEeCCCCceEEccCCCc
Q 011957 197 RNVWRYDPVLNAWSEVSSM--SVGRAYSKIGIL--N---NKLYAVGGVTRGPG-GLTPLQSAEVFDPRTGLWSEILSMPF 268 (474)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~--p~~r~~~~~~~~--~---~~lyv~GG~~~~~~-~~~~~~~~~~yd~~t~~W~~~~~~p~ 268 (474)
..+..+||.+ |+.+... ...-...+++.+ . ...+++|-...... .......+.+|+....+.+.+...+.
T Consensus 807 s~i~lidp~t--~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHT--FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEEEETTT--CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEeCCC--CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 4566788764 5544322 211112222222 1 34556665332211 11134568888887666666644332
Q ss_pred cccccccchhhccccccceeeEEEeCCEEEEeccCCCCcceeccceEEEcCCCCceEEcCCCCCCCCCccccCcceEEEE
Q 011957 269 SKAQVLPTAFLADLLKPIATGMSSYRGRLFVPQSLYFWPFFVDVGGEVYDPDVNSWVEMPVGMGEGWPVRQAGTKLSITV 348 (474)
Q Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~iyv~gG~~~~~~~~~~gg~~yd~~t~~W~~~~~~~~~~~p~~~~~~~~~~~~ 348 (474)
. .. ..+++.++|+|.+.-| ....+||...++--+..... .+. .......+.
T Consensus 885 ~-g~--------------v~al~~~~g~Lla~ig---------~~l~vy~l~~~~~L~~~~~~---~~~--i~~~~l~~~ 935 (1158)
T 3ei3_A 885 K-GA--------------VYSMVEFNGKLLASIN---------STVRLYEWTTEKELRTECNH---YNN--IMALYLKTK 935 (1158)
T ss_dssp S-SC--------------EEEEEEETTEEEEEET---------TEEEEEEECTTSCEEEEEEE---CCC--SCEEEEEEE
T ss_pred C-Cc--------------CEEEeeeCCEEEEEcC---------CEEEEEECCCCceEEEEeec---ccc--EEEEEEecc
Confidence 1 11 1666778888766333 22367877665422211100 010 011113456
Q ss_pred CCEEEEEcCCCCCCCceEEEEECCCCceEEeccCCCCCCCCCCCCCeEEEeeCCEEEEEecCCCCceeEEEEee
Q 011957 349 EGELYALDPSGALDSAKIKVYDYHDDTWKVVVGDVPLPNFTDSESPYLLAGLLGKLHVITNDANHNIAVLQADV 422 (474)
Q Consensus 349 ~~~lyv~GG~~~~~~~~v~~yd~~~~~W~~v~~~~p~~~~~~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~d~ 422 (474)
++.|+|-.-. ..-.+..|+.+.++-..+.. -..+|...++..+++. .++|+...+++.+..++.
T Consensus 936 ~~~I~vgD~~---~Sv~~~~y~~~~~~L~~~a~------D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 936 GDFILVGDLM---RSVLLLAYKPMEGNFEEIAR------DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTEEEEEESS---BCEEEEEEETTTTEEEEEEE------CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCEEEEEEhh---heEEEEEEEcCCCeEEEEEe------ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 7777665432 23367789999988888752 2234444444444433 566677778888888764
Done!