Query 011958
Match_columns 474
No_of_seqs 238 out of 666
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2580 Mitochondrial import i 100.0 2.6E-90 5.6E-95 704.5 24.3 409 26-474 41-459 (459)
2 TIGR00984 3a0801s03tim44 mitoc 100.0 7.6E-76 1.6E-80 602.4 29.2 353 54-464 1-378 (378)
3 PF04280 Tim44: Tim44-like dom 100.0 1.6E-33 3.5E-38 253.9 19.0 147 315-467 1-147 (147)
4 COG4395 Uncharacterized protei 99.9 1.5E-24 3.2E-29 214.9 13.0 149 314-468 132-280 (281)
5 PF07961 MBA1: MBA1-like prote 98.3 2.2E-05 4.9E-10 77.6 15.8 126 329-466 67-199 (235)
6 KOG2580 Mitochondrial import i 98.2 1.8E-05 4E-10 83.1 12.6 252 47-346 67-356 (459)
7 TIGR00984 3a0801s03tim44 mitoc 97.0 0.0034 7.4E-08 66.2 9.3 100 65-197 19-139 (378)
8 PF13355 DUF4101: Protein of u 95.2 0.33 7.1E-06 43.2 11.4 96 352-464 20-117 (117)
9 KOG4599 Putative mitochondrial 92.7 0.0078 1.7E-07 62.4 -4.5 138 315-463 149-311 (379)
10 PF12893 Lumazine_bd_2: Putati 88.6 5.2 0.00011 34.5 10.0 92 337-465 5-113 (116)
11 PF07464 ApoLp-III: Apolipopho 88.5 0.54 1.2E-05 44.1 4.0 29 49-77 43-72 (155)
12 PF12870 Lumazine_bd: Lumazine 88.4 2.1 4.6E-05 35.5 7.3 29 339-367 10-38 (111)
13 PF13474 SnoaL_3: SnoaL-like d 82.5 27 0.00059 29.0 11.4 102 339-467 2-116 (121)
14 PF08332 CaMKII_AD: Calcium/ca 79.0 39 0.00085 30.7 11.6 109 337-471 4-128 (128)
15 PF14534 DUF4440: Domain of un 75.4 17 0.00037 29.3 7.7 69 340-413 3-79 (107)
16 PF12883 DUF3828: Protein of u 74.8 24 0.00052 31.2 8.9 85 354-466 27-117 (120)
17 PRK01919 tatB sec-independent 58.9 32 0.00068 33.0 6.6 19 47-65 37-55 (169)
18 COG1510 Predicted transcriptio 50.5 58 0.0013 31.4 6.9 47 52-102 98-144 (177)
19 COG4319 Ketosteroid isomerase 50.1 2.2E+02 0.0047 26.5 12.7 101 337-464 11-126 (137)
20 KOG2391 Vacuolar sorting prote 44.3 1.1E+02 0.0023 32.6 8.3 72 47-133 210-285 (365)
21 PF05957 DUF883: Bacterial pro 43.9 1.8E+02 0.0039 24.4 8.4 16 65-80 2-17 (94)
22 PRK09635 sigI RNA polymerase s 38.8 55 0.0012 33.3 5.3 50 315-366 155-204 (290)
23 TIGR02246 conserved hypothetic 37.4 2.5E+02 0.0053 23.5 10.4 29 337-365 5-33 (128)
24 COG1422 Predicted membrane pro 36.4 47 0.001 32.6 4.1 39 47-85 58-96 (201)
25 PRK04654 sec-independent trans 30.4 1.7E+02 0.0038 29.0 6.9 27 49-76 43-69 (214)
26 PF13577 SnoaL_4: SnoaL-like d 30.3 76 0.0016 26.7 4.1 28 337-364 8-35 (127)
27 TIGR02957 SigX4 RNA polymerase 30.2 87 0.0019 31.5 5.1 50 314-365 144-193 (281)
28 PF13026 DUF3887: Protein of u 27.2 2.6E+02 0.0057 24.5 6.8 81 329-413 2-96 (101)
29 PRK06568 F0F1 ATP synthase sub 23.4 6.2E+02 0.014 23.8 10.5 77 48-124 32-109 (154)
30 PRK10533 putative lipoprotein; 22.9 2.9E+02 0.0063 26.5 6.7 62 338-401 45-111 (171)
31 PF05223 MecA_N: NTF2-like N-t 22.8 5E+02 0.011 22.5 11.6 28 338-365 3-30 (118)
32 PF11544 Spc42p: Spindle pole 22.7 1.7E+02 0.0036 24.7 4.5 34 60-93 4-37 (76)
33 PRK08241 RNA polymerase factor 22.5 92 0.002 31.8 3.7 53 313-365 188-243 (339)
34 PHA01794 hypothetical protein 22.0 3.5E+02 0.0076 25.0 6.7 40 47-89 71-110 (134)
35 COG2854 Ttg2D ABC-type transpo 21.5 6.8E+02 0.015 24.7 9.2 34 426-470 139-172 (202)
36 COG5420 Uncharacterized conser 21.1 4.2E+02 0.0091 21.7 6.3 66 57-134 2-67 (71)
37 cd00781 ketosteroid_isomerase 20.8 89 0.0019 26.4 2.7 29 338-366 5-33 (122)
38 PF12642 TpcC: Conjugative tra 20.2 7.7E+02 0.017 23.6 9.7 31 336-366 140-170 (232)
39 PRK09636 RNA polymerase sigma 20.2 1.4E+02 0.0031 30.0 4.5 50 314-365 151-200 (293)
No 1
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-90 Score=704.54 Aligned_cols=409 Identities=30% Similarity=0.550 Sum_probs=364.1
Q ss_pred cCCccccccccccCCCC-CCCccchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhh
Q 011958 26 QGSSTRLRLVSANGYSS-NRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDG 104 (474)
Q Consensus 26 ~~~~~~~~~~~~~~~~~-~r~~~~f~~f~~~ik~E~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~r~~~~a~~~~k~v~~ 104 (474)
+++..|+.+.+.++||+ +||+|||++|+||||+||+||||||+|||+|++++++|++| ++|| .||++|..+
T Consensus 41 ~~~~ar~~~~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~es-da~k-----kaR~k~~~~-- 112 (459)
T KOG2580|consen 41 TRLGARLPFSQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEES-DALK-----KARTKYETA-- 112 (459)
T ss_pred hcccccccccccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccc-hHHH-----HHHHHHHHH--
Confidence 46888999999999996 79999999999999999999999999999999999999998 5675 599999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCcccccccccCchhhhhhhcccCccchhhhccccccCC
Q 011958 105 VWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSIS 184 (474)
Q Consensus 105 ~~~e~e~~~~k~s~~~k~k~~~~~e~v~~~~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 184 (474)
|++++++|..++.+++++.|.|+... +++++|.-. ++.+++.+|..++|+++++.-+++|++|.++.+
T Consensus 113 -----e~~t~~~s~~~kk~~~e~~e~~k~~~----~ea~eS~~~---k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~ 180 (459)
T KOG2580|consen 113 -----ESETQASSEVLKKKLGELKETVKLGA----EEAWESALG---KKTKEAVEEAQKQASGSAEEVDTFFEKVGQTAA 180 (459)
T ss_pred -----HhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHhhhhh---ccchhhHHHHHHHhhcchhhhhHhhhhhhhhhh
Confidence 88899999999999999988888775 466664332 377888899999999999988888888887777
Q ss_pred CccchHHHHHhHHHHHHHHHhhhcccccccccCCCCcccccCCCCCCCCCCCCCCcceeEEecccchhhHH-HHHhhcCC
Q 011958 185 SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSK-LKEKMQGY 263 (474)
Q Consensus 185 ~~~~s~~~~k~~~~~~~~~~~~~~~~vk~el~~~~~~rkr~~~~~~~~~~~e~~~~t~~v~~~~k~s~w~~-~k~~~~~~ 263 (474)
.|.+|+.+..+++ -++.++.|..++|+++...+++.+..+.++++++++|.++. +.+|++|++|+||+ |++|+++|
T Consensus 181 yk~vSe~~~~vkk--~~d~s~~g~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~-a~~vv~h~~skw~~kwe~fkek~ 257 (459)
T KOG2580|consen 181 YKAVSEVMETVKK--EIDSSRYGLDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEE-AEGVVLHKDSKWYQKWEDFKEKN 257 (459)
T ss_pred HHHHHHHHHhhcc--cchhhhhhhhchhhhhhhchhhhhhhccCCCcccccCCCcc-eeeEEeccchHHHHHHHHHHhcc
Confidence 7777777777764 45777777777777777655555556666777888887665 34457899999999 99999999
Q ss_pred ccccccccccCccccccccchHHhhhhhhccccchhhh-------hhcccccccccChHHHHHHHHHhcCCCCChhhHHH
Q 011958 264 PVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHK-------IQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVS 336 (474)
Q Consensus 264 p~~~~~~~~~~p~~~k~~e~~~d~r~~~eeSdnP~v~~-------i~di~d~lf~ete~a~al~eIk~~DPsFd~~~Fl~ 336 (474)
.++++|. +|+..||+||||+|.- |.++.+++|.+|+.++++++|+.+||+||.++|++
T Consensus 258 ~~~~k~~---------------~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr 322 (459)
T KOG2580|consen 258 VVVRKFQ---------------ELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLR 322 (459)
T ss_pred cchHHHH---------------HHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHHH
Confidence 9999999 9999999999999954 44555689999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeEEEEEEEEeE
Q 011958 337 EVQEAIRP-VLSAYMKANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQ 415 (474)
Q Consensus 337 ~ar~~~ip-IleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~~pvitVrF~aQq 415 (474)
.|+++|+| ||+||.+||+++||+||++++|++|++++++++++|+.+|++||||++|+|++++||+++|||||+|++|+
T Consensus 323 ~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQe 402 (459)
T KOG2580|consen 323 ECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGVYFDSKILDIRGVDIASGKMMEDGPVLIITFQAQE 402 (459)
T ss_pred HHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCeeecceeeeeccchhHHhhhhccCCEEEEEEeeEE
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeeccccccCC
Q 011958 416 IYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 474 (474)
Q Consensus 416 I~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~a~~ 474 (474)
|||+||.+|+|||||||+|++++|+|+|+| |++||||+. +++|||++|.++|.+++|
T Consensus 403 I~~vRd~~GevveGd~d~i~~v~y~wvl~r-d~~El~~d~-~~~WRLlE~~r~~~~~~~ 459 (459)
T KOG2580|consen 403 IMCVRDAKGEVVEGDPDKILRVYYAWVLCR-DQDELNPDE-YAAWRLLEFSRAGTEQFL 459 (459)
T ss_pred EEEEEcCCCceecCCCCceeeEEeeeeeec-cHhhcCcch-hhhHHHHHHHhccchhcC
Confidence 999999999999999999999999999955 999999755 899999999999999876
No 2
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=100.00 E-value=7.6e-76 Score=602.45 Aligned_cols=353 Identities=22% Similarity=0.415 Sum_probs=302.5
Q ss_pred HHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 011958 54 KKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKG 133 (474)
Q Consensus 54 ~~ik~E~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~r~~~~a~~~~k~v~~~~~e~e~~~~k~s~~~k~k~~~~~e~v~~ 133 (474)
||||+||+||+|||||||+|++++++|+++ |+|| .||++|+.+ |+++.++|+++++++.+..+.|.+
T Consensus 1 d~~k~E~~kskE~~enik~l~~~~~~~~es-ea~k-----~ar~~y~~~-------~~~~~~~s~~~~~~l~~~~~~v~~ 67 (378)
T TIGR00984 1 DTFRDELQKSQELQESIKQLQDRSGKLNES-DALK-----KARKAYEKA-------ESGTLKSSEVVGKTLGKLGDTMKK 67 (378)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHhhhhhh-HHHH-----HHHHHHHHH-------hcccchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999997 7997 699999999 777888998999999999999998
Q ss_pred hccccccccCCCCCcccccccccCchhhhhhhcccCccchhhhccccccCCCccchHHHHHhHHHHHHHHHhhhcccccc
Q 011958 134 TFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKD 213 (474)
Q Consensus 134 ~~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~k~~~~~~~~~~~~~~~~vk~ 213 (474)
... ++.+| +.+ ++ ..+.....++++++ +++++++.+|+|++|+.+|++++.+|+
T Consensus 68 ~~~----~~~~s-~~~--k~---~~~~~~~ta~~~~~----------------~~~~~~~~v~~T~~yk~vs~~~~~~k~ 121 (378)
T TIGR00984 68 MAH----KAWES-ELG--KK---MKKAGAETAKTAAE----------------HVDKSAEPVRDTAVYKHVSQSMKDGKD 121 (378)
T ss_pred HHH----HHhhc-HHH--HH---HHHHHHHHhhhhhh----------------hHHHhcccccccHHHHHHHHHHHhhhc
Confidence 764 23332 111 01 12223333343444 688999999999999999999999999
Q ss_pred cccCCCC-----------cccccCCCCC-CCCCCC-CCCcceeEEecccchhhHH-HHHhhcCCccccccccccCccccc
Q 011958 214 ELSGSPS-----------KRKHLEYTPS-PSWTGE-KSTRTDLVVTPSKKSMWSK-LKEKMQGYPVFKRITGISEPVVTK 279 (474)
Q Consensus 214 el~~~~~-----------~rkr~~~~~~-~~~~~e-~~~~t~~v~~~~k~s~w~~-~k~~~~~~p~~~~~~~~~~p~~~k 279 (474)
|++..+. +|+|.+..+. .++.++ |+++|++ ++||+|+|++ |.+|+++||++++|+
T Consensus 122 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~n~~a~~v--~~~k~s~~~~~w~~fk~~~~~~~~~~--------- 190 (378)
T TIGR00984 122 SSRYGFIADKEQRRRPRELTKRTDGRDFAKSRVVEANESVTDV--VLHSDSSWYSKVEDFKESNVVYRKIQ--------- 190 (378)
T ss_pred ccccccccchhhhhhHHHhhhhhcccccccccccccCCcccce--EEecccHHHHHHHHHHhhCHHHHHHH---------
Confidence 9887331 2333333321 234444 5556666 5699999999 999999999999999
Q ss_pred cccchHHhhhhhhccccchhhhhhcccc-------cccccChHHHHHHHHHhcCCCCChhhHHHHHHHHHHH-HHHHHHh
Q 011958 280 GQEIAEDVRERWETSDNPIVHKIQDMNE-------TIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMK 351 (474)
Q Consensus 280 ~~e~~~d~r~~~eeSdnP~v~~i~di~d-------~lf~ete~a~al~eIk~~DPsFd~~~Fl~~ar~~~ip-IleAy~k 351 (474)
|||++||+||||+|+.+|+|+| +||++|+++.+|++|+++||+||+++|+++|+.+|.| ||+||++
T Consensus 191 ------~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~k 264 (378)
T TIGR00984 191 ------ELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVK 264 (378)
T ss_pred ------HHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987776655 5999999999999999999999999999999999666 9999999
Q ss_pred ccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeC--CeeEEEEEEEEeEEEEEEcCC-CCeec
Q 011958 352 ANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG--SSPIIIVAFQTQQIYCVRDKH-GTITE 428 (474)
Q Consensus 352 GDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~--~~pvitVrF~aQqI~~vRDk~-GeVVE 428 (474)
||++.|++||++++|++|+++|++|.++|++++++||+|++++|+++++++ +.|+|+|+|++|||+|+||++ |+||+
T Consensus 265 GD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~iL~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeVVe 344 (378)
T TIGR00984 265 GDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRILDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEVVA 344 (378)
T ss_pred CCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEEeeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCceee
Confidence 999999999999999999999999999999999999999999999999986 469999999999999999977 99999
Q ss_pred CCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEee
Q 011958 429 GGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 429 Gd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
|+|++|+.+.|+|+|+| ++++++ |+.+++|||++
T Consensus 345 Gd~d~I~~v~yvWtF~R-d~~~~~-~~~~~~Wrl~e 378 (378)
T TIGR00984 345 GDPDNIQRINYAWVFTR-DVEELD-NPETLGWKILE 378 (378)
T ss_pred CCCCceeEEEEEEEEEE-cccccC-CCCCCceeecC
Confidence 99999999999999966 888887 56799999985
No 3
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=100.00 E-value=1.6e-33 Score=253.91 Aligned_cols=147 Identities=35% Similarity=0.561 Sum_probs=132.3
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccceEEeeccee
Q 011958 315 AAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVE 394 (474)
Q Consensus 315 ~a~al~eIk~~DPsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~ve 394 (474)
.+.+++.|+++||+||...|+.+|+++|.+|++||.+||++.|++|||+++|+.|..+|+++...|..++.++|.|.+++
T Consensus 1 ~a~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~~~~~~v~i~~~~ 80 (147)
T PF04280_consen 1 LASAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEVNDPEIVRIDNAE 80 (147)
T ss_dssp -HHHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CchHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCcccceEEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeec
Q 011958 395 VRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 467 (474)
Q Consensus 395 Iv~ak~~~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq 467 (474)
|+++...++.++|+|+|.++||+|++|++|+||+|+++.+..+.|+|+|+|+ + +..+++|+|++|+|
T Consensus 81 i~~~~~~~~~~~vtv~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~----~--~~~~~~W~L~~i~q 147 (147)
T PF04280_consen 81 IVEAEQEGNFDQVTVRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERD----L--GSPNPNWRLAGIQQ 147 (147)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--------TTCCCTEEEEEEE-
T ss_pred eeeceeeCCEEEEEEEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEe----C--CCCCCCEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999885 2 22368999999987
No 4
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.91 E-value=1.5e-24 Score=214.89 Aligned_cols=149 Identities=25% Similarity=0.403 Sum_probs=142.7
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccceEEeecce
Q 011958 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEV 393 (474)
Q Consensus 314 e~a~al~eIk~~DPsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~v 393 (474)
..+.+++.+...||+|++..|+.+++.+|.+|++||..||+++|+.++++++|..|.+++.++...|.+++.+.|+|..+
T Consensus 132 ~~~ag~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~ssfv~~~~~ 211 (281)
T COG4395 132 PLAAGARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQSSFVTILQA 211 (281)
T ss_pred ccccchhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCccccceecchhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeecc
Q 011958 394 EVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQL 468 (474)
Q Consensus 394 eIv~ak~~~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~ 468 (474)
+|.++++.++..++||+|..|.|..+||++|+||+|||+.+.++.|+|+|+|.. +..+|||+|+.||+.
T Consensus 212 di~~a~~~~~~~~atv~~~~~~i~~~~dr~G~vVdGd~~~~~e~~ElWTFtR~~------~s~~p~W~LaaIq~~ 280 (281)
T COG4395 212 DIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEFAELWTFTRDT------GSRDPNWKLAAIQQA 280 (281)
T ss_pred hhhhccccCCceEEEEEEEeeeeeeeccccCceecCCCCcchhhhhheeeeccC------CCCCCCceEEeeecc
Confidence 999999999999999999999999999999999999999999999999999852 344689999999974
No 5
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]. It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].
Probab=98.30 E-value=2.2e-05 Score=77.58 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccceEEee-cceeEEEEEEe--CC--
Q 011958 329 FSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHV-SEVEVRETKMM--GS-- 403 (474)
Q Consensus 329 Fd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I-~~veIv~ak~~--~~-- 403 (474)
+....|.+.|.+.|+.+..||++||++.|+..|+..+|+.|.+-++++-. +..++.+++.+ +.-.|+....+ .+
T Consensus 67 ~~f~~wk~~AiE~yv~~NkaFA~~~~~~L~~~c~~~v~~sL~~R~~~~P~-~~kl~W~L~k~~~~PKvvs~~~~~~p~~~ 145 (235)
T PF07961_consen 67 PRFNEWKNKAIELYVQMNKAFAAGDLDKLRKICSSWVYESLAARIKQRPK-NSKLDWKLVKYNKNPKVVSFQAIPIPGGP 145 (235)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHHHHHHhCCC-CCeeeEEEEEecCCCeEEEEeeeecCCCC
Confidence 34568999999999999999999999999999999999999999998874 56778888876 34456655543 22
Q ss_pred --eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeee
Q 011958 404 --SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQ 466 (474)
Q Consensus 404 --~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiq 466 (474)
.-+++|+|.+.|-....|+.++.+++.+ ..+.|+.+|+|. +- +..|+|.|-.
T Consensus 146 ~~~vQ~Vvk~~TkQ~li~~~k~~~~~~~~e---~dvveyiV~~~d-~~-------t~e~~l~Gsv 199 (235)
T PF07961_consen 146 LEIVQFVVKFDTKQRLIKVDKGSEKVEKKE---RDVVEYIVFQCD-PW-------TNEWVLWGSV 199 (235)
T ss_pred CeEEEEEEEEeeeEEEEEeccccccCCccc---cceeeeEEEEEe-CC-------CCcEEEEEEe
Confidence 6789999999998877887776655443 478999999883 21 3479999854
No 6
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.8e-05 Score=83.06 Aligned_cols=252 Identities=17% Similarity=0.157 Sum_probs=145.0
Q ss_pred cchHHHHHHHH--HHhhhC-hhhHHHHHHHHHHHHHHhhhHH-HHHH---------hhHHHH----HHHHHhhhhhhh--
Q 011958 47 SVFKEFSKKIK--GEAESN-PEFKHSVKELKKKAEEIKGVKE-ELKE---------RTKQTT----EQLYKQVDGVWM-- 107 (474)
Q Consensus 47 ~~f~~f~~~ik--~E~~kn-~E~qe~ik~l~e~a~kl~~~~e-~lk~---------r~~~~a----~~~~k~v~~~~~-- 107 (474)
.|+.+|..-+. .|++.| ++||+.-.+| ++.+.|+.|++ +.++ =|+++. +....-+.++|+
T Consensus 67 ~f~dn~r~E~~knkElqe~iK~lkd~a~~L-~esda~kkaR~k~~~~e~~t~~~s~~~kk~~~e~~e~~k~~~~ea~eS~ 145 (459)
T KOG2580|consen 67 EFSDNVRAELDKNKELQESIKKLKDRAGEL-EESDALKKARTKYETAESETQASSEVLKKKLGELKETVKLGAEEAWESA 145 (459)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444433 244443 4566666666 34555555555 4433 111222 222234577771
Q ss_pred ------hhhhhHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCcccccccccCchhhhhhhcccCccchhhhccccc
Q 011958 108 ------EAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKS 181 (474)
Q Consensus 108 ------e~e~~~~k~s~~~k~k~~~~~e~v~~~~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 181 (474)
++.++++|.-..+.+.++.++++|++|..+.+. |++.. ..++ +...+.||.+..
T Consensus 146 ~~k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~yk~v--Se~~~-------------~vkk-----~~d~s~~g~~i~ 205 (459)
T KOG2580|consen 146 LGKKTKEAVEEAQKQASGSAEEVDTFFEKVGQTAAYKAV--SEVME-------------TVKK-----EIDSSRYGLDIV 205 (459)
T ss_pred hhccchhhHHHHHHHhhcchhhhhHhhhhhhhhhhHHHH--HHHHH-------------hhcc-----cchhhhhhhhch
Confidence 112233332235567888888888888654433 33211 1112 455667898888
Q ss_pred cCCCccchHHHHHhHHHHHHHHHhhhcccccccccCCCCcccccCCCCCCCCCCCCCCcceeEEecccchhhHHHHHhhc
Q 011958 182 SISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQ 261 (474)
Q Consensus 182 ~~~~~~~s~~~~k~~~~~~~~~~~~~~~~vk~el~~~~~~rkr~~~~~~~~~~~e~~~~t~~v~~~~k~s~w~~~k~~~~ 261 (474)
+ +..+++++..-+ +...+ +.+.+..+ -+..++--+-=-.....+|..|+++..
T Consensus 206 k-------~~~r~lr~r~~~-------------~~~~~----~~~~~~E~---n~~a~~vv~h~~skw~~kwe~fkek~~ 258 (459)
T KOG2580|consen 206 K-------ERPRKLRKRTEF-------------LGDTF----PSEKVGEP---NEEAEGVVLHKDSKWYQKWEDFKEKNV 258 (459)
T ss_pred h-------hhhhhchhhhhh-------------hccCC----CcccccCC---CcceeeEEeccchHHHHHHHHHHhccc
Confidence 8 788888875311 11111 11111111 111122112223468999999999999
Q ss_pred CCccccccccccCccccccccchHHhhhhhhccccchhhhhhcc--------cccccccChHHHHHHH-----HHhcCCC
Q 011958 262 GYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDM--------NETIFQETDAAASIKE-----IRRRDPS 328 (474)
Q Consensus 262 ~~p~~~~~~~~~~p~~~k~~e~~~d~r~~~eeSdnP~v~~i~di--------~d~lf~ete~a~al~e-----Ik~~DPs 328 (474)
-.|.++++-+...|..++..++.+|++++|..++||+++++..- +|--|+..+..+-+++ |...--.
T Consensus 259 ~~~k~~~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvk 338 (459)
T KOG2580|consen 259 VVRKFQELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVK 338 (459)
T ss_pred chHHHHHHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999887653 2222444443222221 3344456
Q ss_pred CChhhHHHHHHHHHHHHH
Q 011958 329 FSLPDFVSEVQEAIRPVL 346 (474)
Q Consensus 329 Fd~~~Fl~~ar~~~ipIl 346 (474)
+|++-....|-++-..++
T Consensus 339 GD~evLK~wcsea~~~~~ 356 (459)
T KOG2580|consen 339 GDLEVLKKWCSEAPFSQL 356 (459)
T ss_pred ccHHHHHHHHhhhHHHHH
Confidence 778877777766554433
No 7
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=96.96 E-value=0.0034 Score=66.19 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHH-HHHH-------------hhHHHHHHHHHhhhhhhhhhh---hhHHHHH---HHHHHHH
Q 011958 65 EFKHSVKELKKKAEEIKGVKE-ELKE-------------RTKQTTEQLYKQVDGVWMEAE---STVKKVS---ASMKEKI 124 (474)
Q Consensus 65 E~qe~ik~l~e~a~kl~~~~e-~lk~-------------r~~~~a~~~~k~v~~~~~e~e---~~~~k~s---~~~k~k~ 124 (474)
-||+...+| ++.+-|+.|++ |.++ -+++++...-+.++.+| ++| ..+..++ ..+.++|
T Consensus 19 ~l~~~~~~~-~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~-~s~~~k~~~~~~~~ta~~~~~~~ 96 (378)
T TIGR00984 19 QLQDRSGKL-NESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAW-ESELGKKMKKAGAETAKTAAEHV 96 (378)
T ss_pred HHHHHHhhh-hhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhhhhhhhH
Confidence 366666666 44566666655 4433 34445555666778888 455 1111221 1234899
Q ss_pred HHHHHhhhhhccccccccCCCCCcccccccccCchhhhhhhcccCcc-chhhhccccccCCCccchHHHHHhHH
Q 011958 125 SAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDT-AETFYGKLKSSISSPKFTLAFQKLKE 197 (474)
Q Consensus 125 ~~~~e~v~~~~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~k~~~ 197 (474)
+++++||++|..++- +|++.+ ++ +++.||||..+ +.+++.++
T Consensus 97 ~~~~~~v~~T~~yk~--vs~~~~----------------------~~k~~~~~~~~~~~-------~~~r~~~~ 139 (378)
T TIGR00984 97 DKSAEPVRDTAVYKH--VSQSMK----------------------DGKDSSRYGFIADK-------EQRRRPRE 139 (378)
T ss_pred HHhcccccccHHHHH--HHHHHH----------------------hhhcccccccccch-------hhhhhHHH
Confidence 999999999865332 233222 22 45679999998 77777665
No 8
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=95.19 E-value=0.33 Score=43.16 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=67.0
Q ss_pred ccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccce-EEeecceeEEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCeecC-
Q 011958 352 ANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNR-ILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEG- 429 (474)
Q Consensus 352 GDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~k-IL~I~~veIv~ak~~~~~pvitVrF~aQqI~~vRDk~GeVVEG- 429 (474)
.+.+.|...+++.+++.+......-+++|....-. -+.|..|++..-. ++.+. |.-+-.+...+++ .|++..+
T Consensus 20 ~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~~~~~I~sv~~~~~~--~~ra~--v~a~v~E~~~l~~-~g~~~~~~ 94 (117)
T PF13355_consen 20 HDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYDHKLKIDSVEVFSDS--PNRAT--VEATVTESAQLYD-NGQPDNNP 94 (117)
T ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEeeeeEEEEEEEcCCC--CCeEE--EEEEEEEEEEEEe-CCccccCC
Confidence 46778999999999999999999999999876544 4455555554211 33444 4444455666888 8998886
Q ss_pred CCCceeeEEEEEEEEEeCccccCCCCCCCCeEEee
Q 011958 430 GKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 430 d~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
+.....++.|.... . +..|+|.+
T Consensus 95 s~~~~~~vrY~L~r--~----------~~~WkI~d 117 (117)
T PF13355_consen 95 SYDSTLRVRYELVR--Q----------NGQWKITD 117 (117)
T ss_pred CCCCcEEEEEEEEE--c----------CCEEEecC
Confidence 66667788885554 1 25699975
No 9
>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]
Probab=92.71 E-value=0.0078 Score=62.41 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcC--CCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCH---------------HHHHHHHHHHHHHH
Q 011958 315 AAASIKEIRRRD--PSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSP---------------EVIERCKAEHTAYQ 377 (474)
Q Consensus 315 ~a~al~eIk~~D--PsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~cse---------------a~yn~l~~~Ik~r~ 377 (474)
.-..++.|+..| -+|+.++|-..++..|+.+.-+....|...+..|+++ .+|..+...+
T Consensus 149 ~q~sir~i~~k~~~~~F~ik~f~~kakDifIqaH~~l~~~de~kays~l~e~~fvhl~~~~~t~~~~flp~m~~k~---- 224 (379)
T KOG4599|consen 149 SQMSIRRIRDKDEIENFEIKDFGAKAKDIFIQAHLCLNNSDEMKAYSFLTESEFVHLKCPSITNLLHFLPVMQEKV---- 224 (379)
T ss_pred HHhhhhhhccCCcccceeccccchHhHHHHHHHHHHHhcChHHHHHHHhhccccccccCCCccchhhhccccchhh----
Confidence 456788999999 6999999999999999999999999999998889888 5555544442
Q ss_pred hCCCcccceEEe-ecceeEEEEEEeC------C-eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCcc
Q 011958 378 SHGIFFDNRILH-VSEVEVRETKMMG------S-SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAE 449 (474)
Q Consensus 378 ~~G~~~d~kIL~-I~~veIv~ak~~~------~-~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~e 449 (474)
+.| .+...+|. +.-..++.++-.+ + .+.|+||++++|...++|..|....|+++.-..|.++-+|..+...
T Consensus 225 K~~-~vR~~~vs~leP~~vv~~rc~d~~~~s~n~~aqitvRkh~~q~Lavydrfg~lm~g~E~i~KDv~eyvvfe~hi~~ 303 (379)
T KOG4599|consen 225 KKG-TVRWSFVSVLEPSRVVYVRCDDDNDKSGNFIAQITVRKHTRQCLAVYDRFGRLMFGSEDIKKDVLEYVVFENHIQN 303 (379)
T ss_pred ccC-ceeEEEEeecccceeEEEEecCCcccccccceeeehHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHhhhh
Confidence 222 23344443 2333344444432 2 6899999999999999999999999999888889999999766433
Q ss_pred ccCCCCCCCCeEEe
Q 011958 450 ELGEDVLYPIWKLR 463 (474)
Q Consensus 450 el~~~~~~~~WrL~ 463 (474)
. ++.|||-
T Consensus 304 ~------~g~wr~h 311 (379)
T KOG4599|consen 304 A------YGRWRLH 311 (379)
T ss_pred h------hhhhhhc
Confidence 3 5778854
No 10
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=88.56 E-value=5.2 Score=34.53 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH--------------HHHHHHHHHHH---HhCCCcccceEEeecceeEEEEE
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV--------------IERCKAEHTAY---QSHGIFFDNRILHVSEVEVRETK 399 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~--------------yn~l~~~Ik~r---~~~G~~~d~kIL~I~~veIv~ak 399 (474)
..+..+..-.+++..||.+.|+..++|++ ...|.+-++.+ ...+.....+|+. +.
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~--------i~ 76 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILS--------ID 76 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEE--------EE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEE--------EE
Confidence 34455555778888999999999998876 46677777765 3334343444433 24
Q ss_pred EeCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeee
Q 011958 400 MMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREM 465 (474)
Q Consensus 400 ~~~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~ei 465 (474)
+.++.+.+.|.+.-. + ....++++|.+. +..|+|+.-
T Consensus 77 i~g~~A~a~v~~~~~------~-------------~~~~d~~~L~K~----------dg~WkIv~k 113 (116)
T PF12893_consen 77 IDGDVASAKVEYEFP------G-------------FWFVDYFTLVKT----------DGGWKIVSK 113 (116)
T ss_dssp EETTEEEEEEEEEEE------T-------------EEEEEEEEEEEE----------TTEEEEEEE
T ss_pred EECCEEEEEEEEEEC------C-------------CceEEEEEEEEE----------CCEEEEEEE
Confidence 457777777777552 1 156788999774 368999863
No 11
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=88.50 E-value=0.54 Score=44.11 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhh-ChhhHHHHHHHHHHH
Q 011958 49 FKEFSKKIKGEAES-NPEFKHSVKELKKKA 77 (474)
Q Consensus 49 f~~f~~~ik~E~~k-n~E~qe~ik~l~e~a 77 (474)
++.++.+|.+|+.+ ||++.+-++.|+...
T Consensus 43 l~~~~~~l~eeik~~n~~~~e~l~~~~~kl 72 (155)
T PF07464_consen 43 LQNVSSSLQEEIKDANPEAEEALKQLKTKL 72 (155)
T ss_dssp HHHHHHHHHHHHTT-SSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHHH
Confidence 78899999999999 999999999988773
No 12
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=88.44 E-value=2.1 Score=35.52 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhccHHHHHhccCHHHHH
Q 011958 339 QEAIRPVLSAYMKANVETLKKYCSPEVIE 367 (474)
Q Consensus 339 r~~~ipIleAy~kGDle~LK~~csea~yn 367 (474)
+++..-.+.|+.+||.+....||++..-.
T Consensus 10 ~~~v~~f~~al~~gd~~~a~~~~~~~~~~ 38 (111)
T PF12870_consen 10 EEVVKNFFDALKNGDYEKAYAYLSPESRE 38 (111)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHTB--TT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCccccc
Confidence 44555578899999999999999998884
No 13
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=82.46 E-value=27 Score=29.02 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhccHHHHHhccCHHH-------------HHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCee
Q 011958 339 QEAIRPVLSAYMKANVETLKKYCSPEV-------------IERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSP 405 (474)
Q Consensus 339 r~~~ipIleAy~kGDle~LK~~csea~-------------yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~~p 405 (474)
+..+....+||.+||.+.|..+|++++ ++.+.+-.+..-..+ ..--+.+.++.+ ...++..
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~v---~~~~~~a 75 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESF---RPISIEFEDVQV---SVSGDVA 75 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTH---SEEEEEEEEEEE---EEETTEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhC---ceEEEEEEEEEE---EECCCEE
Confidence 345566889999999999999887542 334444444433321 122222333444 2245566
Q ss_pred EEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeec
Q 011958 406 IIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 467 (474)
Q Consensus 406 vitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq 467 (474)
+++..+..+ .+ .+|+-. .......++|++. +..|+|+-++.
T Consensus 76 ~~~~~~~~~----~~-~~~~~~------~~~~r~t~v~~k~----------~~~Wki~h~H~ 116 (121)
T PF13474_consen 76 VVTGEFRLR----FR-NDGEEI------EMRGRATFVFRKE----------DGGWKIVHIHW 116 (121)
T ss_dssp EEEEEEEEE----EE-CTTCEE------EEEEEEEEEEEEE----------TTEEEEEEEEE
T ss_pred EEEEEEEEE----Ee-cCCccc------eeeEEEEEEEEEE----------CCEEEEEEEEe
Confidence 665555443 22 334322 3455666677554 25899998775
No 14
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=78.98 E-value=39 Score=30.72 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH------H-HHH---HHHHHHHHhC-----CCcccceEEeecceeEEEEEEe
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV------I-ERC---KAEHTAYQSH-----GIFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~------y-n~l---~~~Ik~r~~~-----G~~~d~kIL~I~~veIv~ak~~ 401 (474)
+.-..+...++|...||.+....+|+|++ . +.+ -..++.|=.+ +....+.|+. ..| .++
T Consensus 4 eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~-p~V-----~~l 77 (128)
T PF08332_consen 4 EIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILN-PHV-----RLL 77 (128)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEE-EEE-----EEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecC-CeE-----EEc
Confidence 45567778999999999999999999981 1 111 1112222221 1111222332 233 334
Q ss_pred C-CeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeeccccc
Q 011958 402 G-SSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQ 471 (474)
Q Consensus 402 ~-~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~ 471 (474)
+ +.++++=.+..| +-|++|... -....|..+.++. +..|+++..+..+|+
T Consensus 78 g~~~Ai~~gvy~f~----~~d~~G~~~------~~~areT~v~~~~----------~g~W~ivhhHsS~mP 128 (128)
T PF08332_consen 78 GDNAAIDAGVYTFQ----FVDKDGVPR------TVQARETRVWQKR----------DGKWKIVHHHSSAMP 128 (128)
T ss_dssp STTEEEEEEEEEEE----EESTTSSEE------EEEEEEEEEEEEE----------TTEEEEEEEEEEESS
T ss_pred CCCEEEEeeEEEEE----eecCCCCee------eEEEeEEEEEEEe----------CCeEEEEEEecCCCC
Confidence 4 477777666665 566666521 1233444444343 257999999887663
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=75.42 E-value=17 Score=29.28 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhccHHHHHhccCHHHH--------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeEEEEEE
Q 011958 340 EAIRPVLSAYMKANVETLKKYCSPEVI--------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAF 411 (474)
Q Consensus 340 ~~~ipIleAy~kGDle~LK~~csea~y--------n~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~~pvitVrF 411 (474)
..+....+||.++|.+.|..+++|++. -...+.++.+.... ....-+.+ +...+...++.++++.++
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~--~~~~~~~~---~~~~v~~~gd~a~~~~~~ 77 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTILGKEAILAAFKSGF--ARFSSIKF---EDVEVRVLGDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHC--EEEEEEEE---EEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEeCHHHHHHHHhhcc--CCCceEEE---EEEEEEEECCEEEEEEEE
Confidence 445568899999999999999887641 12344455554411 12222333 334445567777766665
Q ss_pred EE
Q 011958 412 QT 413 (474)
Q Consensus 412 ~a 413 (474)
..
T Consensus 78 ~~ 79 (107)
T PF14534_consen 78 TF 79 (107)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 16
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=74.82 E-value=24 Score=31.23 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=52.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHH-HHhCCCcc--cceEE---eecceeEEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCee
Q 011958 354 VETLKKYCSPEVIERCKAEHTA-YQSHGIFF--DNRIL---HVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTIT 427 (474)
Q Consensus 354 le~LK~~csea~yn~l~~~Ik~-r~~~G~~~--d~kIL---~I~~veIv~ak~~~~~pvitVrF~aQqI~~vRDk~GeVV 427 (474)
.+.+++||++++.+.+...... ....+.-+ .+.-. -+.++.|..+.+.++.+.+.|+|
T Consensus 27 ~~~~~~yvsk~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~w~~~i~v~~~~~~~~~a~v~v~~---------------- 90 (120)
T PF12883_consen 27 EELMERYVSKETIAKLKKIYQLEQGILDFDYFIKAQDYDPDWVSNIKVGPAKMDGDCAVVYVTF---------------- 90 (120)
T ss_dssp HHHHHHHB-HHHHHHHHHHH----HHSSSBTTTTBSS--TTSGGG-EEEEEETTEEEEEEEETT----------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCcCCCCceecccCChhhHhhEEEeeccccCCeEEEEEEE----------------
Confidence 3469999999999999987763 22222221 11111 15788888888877788888887
Q ss_pred cCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeee
Q 011958 428 EGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQ 466 (474)
Q Consensus 428 EGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiq 466 (474)
|.. .-......+.|.+. +..|+|..|.
T Consensus 91 -G~~-~~~~~~~~~~l~ke----------~g~WkI~~V~ 117 (120)
T PF12883_consen 91 -GKN-NEKKQTVIVCLVKE----------NGRWKIDDVR 117 (120)
T ss_dssp -TST-T-EEEEEEEEEEEE----------TTEEEEEEES
T ss_pred -ecC-CCCCEEEEEEEEEE----------CCEEEEEEee
Confidence 221 12345566667553 3789999885
No 17
>PRK01919 tatB sec-independent translocase; Provisional
Probab=58.93 E-value=32 Score=32.96 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHhhhChh
Q 011958 47 SVFKEFSKKIKGEAESNPE 65 (474)
Q Consensus 47 ~~f~~f~~~ik~E~~kn~E 65 (474)
+-|..+++.+|+|++..-+
T Consensus 37 ~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 37 GRAQRYINDVKAEVSREIE 55 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4466677777777764433
No 18
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=50.50 E-value=58 Score=31.39 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhh
Q 011958 52 FSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQV 102 (474)
Q Consensus 52 f~~~ik~E~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~r~~~~a~~~~k~v 102 (474)
|-++++.|+++|+| .++++.++.....+. ++|..|+++.+.++....
T Consensus 98 f~ek~~ReId~t~e---~l~k~~~e~~~~~~~-~~~~~~~ke~~~~l~~~l 144 (177)
T COG1510 98 FEEKWKREIDPTKE---ALKKLLEELNEDLDD-RDLTERIKEIKSKLERLL 144 (177)
T ss_pred HHHHHHHHhhhHHH---HHHHHHHHccccccc-hhhhHHHHHHHHHHHHHH
Confidence 44788999999987 588888888777774 478776666666665544
No 19
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=50.05 E-value=2.2e+02 Score=26.51 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHh---------------ccCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEe
Q 011958 337 EVQEAIRPVLSAYMKANVETLKK---------------YCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~---------------~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~ 401 (474)
..+..|.+-..|+..+|.+.+-. .|+.+.|...-..+......+..+...-|.| . ..
T Consensus 11 ~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v-----~---~~ 82 (137)
T COG4319 11 AIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQV-----H---ES 82 (137)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeee-----e---cc
Confidence 34455555567999999999873 4566777777777776555444433333322 2 13
Q ss_pred CCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEee
Q 011958 402 GSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 402 ~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
++.+.++=.+... |. -.|++.....-...|+|++.. +.+|+|+-
T Consensus 83 GD~a~~~~~~~~~---------~~-~~dg~~~~~~~Rat~v~rK~~---------dg~Wk~~~ 126 (137)
T COG4319 83 GDVAFVTALLLLT---------GT-KKDGPPADLAGRATYVFRKEA---------DGGWKLAH 126 (137)
T ss_pred CCEEEEEEeeeee---------cc-CCCCcchhheeeeEEEEEEcC---------CCCEEEEE
Confidence 4555554444432 22 123344446678888996631 35899963
No 20
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.32 E-value=1.1e+02 Score=32.62 Aligned_cols=72 Identities=24% Similarity=0.227 Sum_probs=42.6
Q ss_pred cchHHHHHH----HHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 011958 47 SVFKEFSKK----IKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122 (474)
Q Consensus 47 ~~f~~f~~~----ik~E~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~r~~~~a~~~~k~v~~~~~e~e~~~~k~s~~~k~ 122 (474)
++.+-..+. .++||+.+.-+|++||.+.|+..+-.+==++.+.++.|..-.+.+.+ ++++.
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni---------------DIL~~ 274 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI---------------DILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---------------HHHHH
Confidence 344444444 46899999999999999988854432200122323334443443333 37777
Q ss_pred HHHHHHHhhhh
Q 011958 123 KISAATEEVKG 133 (474)
Q Consensus 123 k~~~~~e~v~~ 133 (474)
|+.++.++.++
T Consensus 275 k~~eal~~~~n 285 (365)
T KOG2391|consen 275 KVREALEKAEN 285 (365)
T ss_pred HHHHHHhhhcc
Confidence 77777776665
No 21
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=43.92 E-value=1.8e+02 Score=24.40 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 011958 65 EFKHSVKELKKKAEEI 80 (474)
Q Consensus 65 E~qe~ik~l~e~a~kl 80 (474)
+|++.|.+|+++++.|
T Consensus 2 ~l~~~l~~l~~d~~~l 17 (94)
T PF05957_consen 2 DLKAELEQLRADLEDL 17 (94)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677778888887777
No 22
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=38.77 E-value=55 Score=33.34 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHH
Q 011958 315 AAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVI 366 (474)
Q Consensus 315 ~a~al~eIk~~DPsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~y 366 (474)
..++.+.++...|.|... -..-+......+.|+..||++.|..+++|++-
T Consensus 155 l~RAr~~Lr~~~~~~~~~--~~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~ 204 (290)
T PRK09635 155 AHRARRKINESRIAASVE--PAQHRVVTRAFIEACSNGDLDTLLEVLDPGVA 204 (290)
T ss_pred HHHHHHHHHhhCCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHHHHhhhhhc
Confidence 467888899888877643 22334455559999999999999999999883
No 23
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=37.43 E-value=2.5e+02 Score=23.51 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
.++..+....+||.+||.+.|..++++++
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da 33 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDG 33 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCc
Confidence 35556666889999999999988777763
No 24
>COG1422 Predicted membrane protein [Function unknown]
Probab=36.40 E-value=47 Score=32.63 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHH
Q 011958 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKE 85 (474)
Q Consensus 47 ~~f~~f~~~ik~E~~kn~E~qe~ik~l~e~a~kl~~~~e 85 (474)
|++..+...+==-.+|=+++|+-+|+|+++-++..++.+
T Consensus 58 gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 58 GLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778888888777888889999999999999777766443
No 25
>PRK04654 sec-independent translocase; Provisional
Probab=30.40 E-value=1.7e+02 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 011958 49 FKEFSKKIKGEAESNPEFKHSVKELKKK 76 (474)
Q Consensus 49 f~~f~~~ik~E~~kn~E~qe~ik~l~e~ 76 (474)
|+.+.+.|.+|++ ..||++.+++++..
T Consensus 43 ~~~vk~El~~El~-~~ELrk~l~~~~~~ 69 (214)
T PRK04654 43 WDSVKQELERELE-AEELKRSLQDVQAS 69 (214)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHH
Confidence 4555555555543 35666665555443
No 26
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=30.30 E-value=76 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
.+++.+.....++..+|.+.+.++++++
T Consensus 8 ~I~~l~~~~~~~~D~~~~~~~~~lft~d 35 (127)
T PF13577_consen 8 AIRDLIARYARALDTGDWEEWADLFTED 35 (127)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhhCCCHHHHHhccCCc
Confidence 3445555567888899999998877554
No 27
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=30.19 E-value=87 Score=31.46 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 314 e~a~al~eIk~~DPsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
-..++.+.|+..-|.|.... ...+......++|+..||++.|..++++++
T Consensus 144 ~l~RAr~~Lr~~~~~~~~~~--~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv 193 (281)
T TIGR02957 144 LVSRARRHLDARRPRFEVSR--EESRQLLERFVEAAQTGDLDGLLELLAEDV 193 (281)
T ss_pred HHHHHHHHHHhhCCCCCCCh--HHHHHHHHHHHHHHHhCCHHHHHHHHhhce
Confidence 35778888888777665432 334455556999999999999999999987
No 28
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=27.24 E-value=2.6e+02 Score=24.52 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHHHHHH-HHHHH-----HHhCCCccc---ceE---Eeec--cee
Q 011958 329 FSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVIERCK-AEHTA-----YQSHGIFFD---NRI---LHVS--EVE 394 (474)
Q Consensus 329 Fd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~yn~l~-~~Ik~-----r~~~G~~~d---~kI---L~I~--~ve 394 (474)
|+.+.+.+.|++.+..+ ..+|.+.+..-|++.+=+.|. ..+++ ..+.|.+-+ ... =+++ ...
T Consensus 2 f~~Ekv~~~Aeevi~~~----N~~dy~~v~~~~d~~mk~aL~~e~~~~~~~~~l~k~G~f~~f~ki~~~~~~d~~~~~~v 77 (101)
T PF13026_consen 2 FDEEKVKQKAEEVIDLL----NEKDYDKVHEKYDEKMKNALTAEELKEKWGPVLEKAGAFESFEKITVSMIEDKDGYATV 77 (101)
T ss_pred CcHHHHHHHHHHHHHHH----hHhhHHHHHHHHhHHHHHhcCHHHHHHHHHHHHHhccccchhhhhhhhcccccCcceEE
Confidence 77888888888766554 458888888888888777776 33332 223342211 111 1111 123
Q ss_pred EEEEEEeCCeeEEEEEEEE
Q 011958 395 VRETKMMGSSPIIIVAFQT 413 (474)
Q Consensus 395 Iv~ak~~~~~pvitVrF~a 413 (474)
|.-++..++...++|+|.-
T Consensus 78 V~vakYen~~~~ftitF~~ 96 (101)
T PF13026_consen 78 VQVAKYENGKHQFTITFDN 96 (101)
T ss_pred EEEecccCccEEEEEEeCc
Confidence 3444555667777777754
No 29
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=23.43 E-value=6.2e+02 Score=23.75 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhhhChhhHHHHHHHHHHHHHH-hhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 011958 48 VFKEFSKKIKGEAESNPEFKHSVKELKKKAEEI-KGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKI 124 (474)
Q Consensus 48 ~f~~f~~~ik~E~~kn~E~qe~ik~l~e~a~kl-~~~~e~lk~r~~~~a~~~~k~v~~~~~e~e~~~~k~s~~~k~k~ 124 (474)
++..=-+.|.++++.=...++...+|.++.++. ++++.....-+.++-++.-+..+++-.+++.++.+.-+..+..|
T Consensus 32 ~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~I 109 (154)
T PRK06568 32 SLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLI 109 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678888888888888888888777665 44332221122223333333444444444444444443433333
No 30
>PRK10533 putative lipoprotein; Provisional
Probab=22.92 E-value=2.9e+02 Score=26.50 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHH-HHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHh----CCCcccceEEeecceeEEEEEEe
Q 011958 338 VQEAIRP-VLSAYMKANVETLKKYCSPEVIERCKAEHTAYQS----HGIFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 338 ar~~~ip-IleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~----~G~~~d~kIL~I~~veIv~ak~~ 401 (474)
|+..|-. |+. ...++..|++|++..+|..|...-+.... .|-.+.+..-+-..++|..+...
T Consensus 45 aqqfyd~riq~--d~~~la~lRPyLSd~Ly~~L~~A~r~~~~~~~~~GDiFSS~~eG~TsA~VasastI 111 (171)
T PRK10533 45 AQQFYDYRIQH--RSNDIAALRPYLSDKLATLLSDASRDNSHRQLLSGDPFSSRTTLPDSAHVASASTI 111 (171)
T ss_pred HHHHHHHHhcc--chhhHHHhcccccHHHHHHHHHHhhccccCCcccCCcccccccCCccceecccccC
Confidence 3444433 655 77889999999999999999988775432 23344445555667777776444
No 31
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=22.83 E-value=5e+02 Score=22.46 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
.+..+...++||.+||.+..-.+++...
T Consensus 3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~ 30 (118)
T PF05223_consen 3 PEETAEAFLEAWEKGDYAAMYELTSDPS 30 (118)
T ss_dssp --HHHHHHHHHHHTT-HHHHHHTB-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhchhh
Confidence 4556667899999999999999999888
No 32
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=22.71 E-value=1.7e+02 Score=24.67 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=26.7
Q ss_pred hhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHH
Q 011958 60 AESNPEFKHSVKELKKKAEEIKGVKEELKERTKQ 93 (474)
Q Consensus 60 ~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~r~~~ 93 (474)
++.|++|+.-+..-++|.++|+.--+.|+.++.+
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999997766678765544
No 33
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=22.46 E-value=92 Score=31.82 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 313 TDAAASIKEIRRRDPSFS---LPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 313 te~a~al~eIk~~DPsFd---~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
+-..++.+.|++..|.+. ...+...-+..+...++||.+||++.|-.+++|++
T Consensus 188 ~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv 243 (339)
T PRK08241 188 SALQRARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDA 243 (339)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCE
Confidence 345788899998666521 12355556666677899999999999999999876
No 34
>PHA01794 hypothetical protein
Probab=22.01 E-value=3.5e+02 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHH
Q 011958 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKE 89 (474)
Q Consensus 47 ~~f~~f~~~ik~E~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~ 89 (474)
|=++.+++.|++||..+-=|+.-|++.=+- ++.+-+||++
T Consensus 71 ~~~e~lF~eleqEm~~SGFF~~ki~kyien---~EK~~~yl~~ 110 (134)
T PHA01794 71 GTTEGLFAELEKEMVDSGFFRAKIKKYIEN---MEKSARYLKA 110 (134)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhc
Confidence 457888899999999999988888877555 5555567875
No 35
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.49 E-value=6.8e+02 Score=24.74 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=21.4
Q ss_pred eecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeecccc
Q 011958 426 ITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGV 470 (474)
Q Consensus 426 VVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~ 470 (474)
|+.+ +.++..+.|.|.-. ..+++|++.+|...|+
T Consensus 139 Ii~~-~~~PV~l~f~~r~~----------~~~G~WKv~Dvi~eGi 172 (202)
T COG2854 139 IIDP-GQKPVKLDFLWRKN----------NQTGKWKVYDVIIEGV 172 (202)
T ss_pred EccC-CCCCeEEEEEEeec----------CCcCCeeEEEeeecch
Confidence 3334 34556666666441 1146799999998886
No 36
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.10 E-value=4.2e+02 Score=21.72 Aligned_cols=66 Identities=26% Similarity=0.326 Sum_probs=43.2
Q ss_pred HHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 011958 57 KGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGT 134 (474)
Q Consensus 57 k~E~~kn~E~qe~ik~l~e~a~kl~~~~e~lk~r~~~~a~~~~k~v~~~~~e~e~~~~k~s~~~k~k~~~~~e~v~~~ 134 (474)
+.||..=.|+|+-|++|+-+|+..+- .|. .+..-+---|+|-+..+.|+=+++++ ++++..++.+.
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm---~Lh--------DLAEgLP~~wtei~~VA~kt~~~yae-LD~~k~ELakl 67 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKM---ELH--------DLAEGLPVKWTEIMAVAEKTFEAYAE-LDAAKRELAKL 67 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHh---hHH--------HHhccCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 35667778999999999998876654 232 23333333576667777777766554 66776666554
No 37
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=20.85 E-value=89 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHHHH
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPEVI 366 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea~y 366 (474)
.+..+....+||.+||.+.|..+++|++.
T Consensus 5 ~~~~v~~~~~a~~~~D~~~~~~l~aed~~ 33 (122)
T cd00781 5 MKAAVQRYVEAVNAGDPEGIVALFADDAT 33 (122)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHcCCCeE
Confidence 44555568899999999999999888765
No 38
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=20.22 E-value=7.7e+02 Score=23.63 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHHHH
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPEVI 366 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea~y 366 (474)
..+.......+.||..|+.+.|.-|+.+..-
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~ 170 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAI 170 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcc
Confidence 3444444448999999999999999997753
No 39
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=20.21 E-value=1.4e+02 Score=29.95 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 314 e~a~al~eIk~~DPsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
-..++.+.++..-|.+.. .....++.....+.||.+||.+.|..+++|++
T Consensus 151 ~l~RAr~~Lr~~~~~~~~--~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv 200 (293)
T PRK09636 151 LASRARKHVRAARPRFPV--SDEEGAELVEAFFAALASGDLDALVALLAPDV 200 (293)
T ss_pred HHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHHHHHhCCHHHHHHHHhhCe
Confidence 357888899887776532 22334555566999999999999999988876
Done!