Query 011958
Match_columns 474
No_of_seqs 238 out of 666
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk9_A Mitochondrial import in 100.0 1.8E-56 6.1E-61 432.3 17.9 206 251-473 7-221 (222)
2 2cw9_A Translocase of inner mi 100.0 7.7E-46 2.6E-50 351.1 20.6 183 287-473 3-193 (194)
3 2f86_B Hypothetical protein K1 86.0 2.7 9.2E-05 36.9 8.3 110 336-471 12-134 (143)
4 4hyz_A Uncharacterized protein 84.9 2.1 7.2E-05 36.4 6.8 98 323-426 5-109 (114)
5 3gzr_A Uncharacterized protein 84.0 9.4 0.00032 33.1 10.9 108 337-467 7-127 (146)
6 2ux0_A Calcium-calmodulin depe 82.0 18 0.00063 30.2 11.7 29 336-364 13-41 (143)
7 3hx8_A MLR2180 protein, putati 81.1 20 0.00067 28.8 13.0 110 336-471 6-127 (129)
8 3soy_A NTF2-like superfamily p 81.0 5.3 0.00018 34.7 8.0 118 333-470 7-136 (145)
9 3cnx_A Uncharacterized protein 80.7 32 0.0011 31.1 13.5 29 337-365 13-41 (170)
10 3h51_A Putative calcium/calmod 80.6 10 0.00034 32.6 9.7 110 336-469 20-139 (156)
11 3f7s_A Uncharacterized NTF2-li 80.5 18 0.00061 30.2 11.0 28 337-364 9-36 (142)
12 4i4k_A Uncharacterized protein 77.8 26 0.00088 29.9 11.4 29 337-365 20-48 (143)
13 2r4i_A Uncharacterized protein 76.7 9.5 0.00033 30.6 7.9 30 336-365 6-35 (123)
14 3bb9_A Putative orphan protein 75.5 19 0.00065 30.5 9.8 29 337-365 31-59 (148)
15 3fsd_A NTF2-like protein of un 74.9 13 0.00043 31.3 8.4 106 336-467 14-130 (134)
16 3gwr_A Putative calcium/calmod 74.6 27 0.00093 30.1 10.7 26 339-364 11-36 (144)
17 3d9r_A Ketosteroid isomerase-l 73.3 32 0.0011 27.8 10.4 28 337-364 12-39 (135)
18 3rob_A Uncharacterized conserv 68.6 56 0.0019 28.0 12.4 101 338-464 19-131 (139)
19 3fka_A Uncharacterized NTF-2 l 68.2 52 0.0018 27.4 11.3 89 339-465 12-115 (120)
20 3duk_A NTF2-like protein of un 66.9 35 0.0012 28.7 9.5 90 338-464 14-118 (125)
21 3blz_A NTF2-like protein of un 63.6 27 0.00092 29.0 8.0 94 337-466 13-121 (128)
22 3ksp_A Calcium/calmodulin-depe 61.4 33 0.0011 29.6 8.3 98 345-467 18-123 (129)
23 3ejv_A Uncharacterized protein 59.3 34 0.0012 30.7 8.4 117 337-466 27-169 (179)
24 2gxf_A Hypothetical protein YY 54.7 43 0.0015 27.9 7.9 111 337-470 4-124 (142)
25 2owp_A Hypothetical protein BX 47.7 78 0.0027 26.8 8.4 37 330-366 5-41 (129)
26 3cu3_A Domain of unknown funct 44.0 1.5E+02 0.0053 25.3 10.2 29 336-364 16-44 (172)
27 3ehc_A Snoal-like polyketide c 41.9 54 0.0019 26.6 6.3 28 338-365 5-32 (128)
28 2gey_A ACLR protein; alpha+bet 37.7 1.3E+02 0.0044 25.4 8.3 27 338-364 6-32 (158)
29 3b7c_A Uncharacterized protein 37.2 1.6E+02 0.0056 23.7 11.3 29 337-365 6-36 (122)
30 2chc_A Protein RV3472; hypothe 32.5 2.3E+02 0.0079 24.0 10.9 27 338-364 16-42 (170)
31 3dmc_A NTF2-like protein; stru 31.9 13 0.00044 31.6 0.8 33 333-365 9-41 (134)
32 2rfr_A Uncharacterized protein 30.3 2.3E+02 0.0079 23.3 8.8 28 337-364 20-47 (155)
33 3g0k_A Putative membrane prote 30.2 88 0.003 26.8 6.0 29 337-365 28-57 (148)
34 2rcd_A Uncharacterized protein 30.0 2.2E+02 0.0076 23.1 11.5 30 335-364 13-42 (129)
35 2gex_A SNOL; alpha+beta barrel 27.9 2.6E+02 0.0089 23.2 9.8 27 338-364 6-32 (152)
36 3f40_A Uncharacterized NTF2-li 26.3 21 0.0007 29.5 1.1 27 339-365 9-35 (114)
37 3dm8_A Uncharacterized protein 26.3 2.8E+02 0.0095 23.0 9.4 27 339-365 7-33 (143)
38 2i7u_A Four-alpha-helix bundle 23.2 1E+02 0.0034 23.0 4.1 22 56-80 4-25 (62)
39 3he4_B Synzip5; heterodimeric 22.3 1E+02 0.0034 21.8 3.7 25 64-88 6-30 (46)
40 3s84_A Apolipoprotein A-IV; fo 22.1 5.4E+02 0.018 24.8 10.9 17 86-102 70-86 (273)
No 1
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=100.00 E-value=1.8e-56 Score=432.25 Aligned_cols=206 Identities=26% Similarity=0.513 Sum_probs=162.4
Q ss_pred hhhHH-HHHhhcCCccccccccccCccccccccchHHhhhh-hhccccchhhhhhccccc---ccccChHHHHHHHHHhc
Q 011958 251 SMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNET---IFQETDAAASIKEIRRR 325 (474)
Q Consensus 251 s~w~~-~k~~~~~~p~~~~~~~~~~p~~~k~~e~~~d~r~~-~eeSdnP~v~~i~di~d~---lf~ete~a~al~eIk~~ 325 (474)
.+|++ |++|+++||++++|+ |||++ |||||||+|+++|+|+|+ ||++|+++++|++|+++
T Consensus 7 ~~~~~~w~~fk~~~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~ 71 (222)
T 3qk9_A 7 ESFGKKVEDFKEKTVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLM 71 (222)
T ss_dssp --------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC--
T ss_pred hHHHHHHHHHhhcCHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHh
Confidence 38999 999999999999999 99999 999999999999999984 89999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH-HHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeC--
Q 011958 326 DPSFSLPDFVSEVQEAIRP-VLSAYMKANVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG-- 402 (474)
Q Consensus 326 DPsFd~~~Fl~~ar~~~ip-IleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~-- 402 (474)
||+||+++|+++|+++|+| ||+||.+||++.||+||++++|+.|+++|++|+++|++++++||+|++++|+++++++
T Consensus 72 DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il~I~~vdI~~a~~~~~~ 151 (222)
T 3qk9_A 72 DPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQ 151 (222)
T ss_dssp ---CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEEEEEEEEEEEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEeeecceEEEEEEEecCC
Confidence 9999999999999999887 9999999999999999999999999999999999999999999999999999999995
Q ss_pred CeeEEEEEEEEeEEEEEEc-CCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeeccccccC
Q 011958 403 SSPIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQAL 473 (474)
Q Consensus 403 ~~pvitVrF~aQqI~~vRD-k~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~a~ 473 (474)
+.|+|+|+|++|||+|+|| ++|+||+|+|++|.++.|+|+|+| ++++++ +..+|+|+|++|||.|+.+.
T Consensus 152 ~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R-~~~~~d-~~~tp~WkL~eiq~~~~~~~ 221 (222)
T 3qk9_A 152 DIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQID-DDETEGWKILEFVRGGSRQF 221 (222)
T ss_dssp CCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEE-CCC---------CEEEEEEECCCCSCC
T ss_pred CceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEE-cCccCC-CCCCCCcEEehhhccccccc
Confidence 7999999999999999999 999999999999999999999976 666554 23458999999999997654
No 2
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=100.00 E-value=7.7e-46 Score=351.05 Aligned_cols=183 Identities=26% Similarity=0.546 Sum_probs=162.5
Q ss_pred hhhhhhccccchh-------hhhhcccccccccChHHHHHHHHHhcCCCCChhhHHHHHHHH-HHHHHHHHHhccHHHHH
Q 011958 287 VRERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEA-IRPVLSAYMKANVETLK 358 (474)
Q Consensus 287 ~r~~~eeSdnP~v-------~~i~di~d~lf~ete~a~al~eIk~~DPsFd~~~Fl~~ar~~-~ipIleAy~kGDle~LK 358 (474)
.+++|||||||+| ++++|++++||++|+.+.+|++|+++||+||++.|+++|+.+ |.+||+||.+||++.|+
T Consensus 3 ~~~~~~~s~n~~v~~~r~~~~~~~~~~~~~f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr 82 (194)
T 2cw9_A 3 SGSSGDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 82 (194)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHH
T ss_pred ccccccCCCCceEEeehhhhhhhhhhhccccCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5678999999999 588888999999999999999999999999999999999999 67799999999999999
Q ss_pred hccCHHHHHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEE
Q 011958 359 KYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVY 438 (474)
Q Consensus 359 ~~csea~yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~ 438 (474)
+||||++|+.|+++|++|..+|.++++++|+|++++|++++++++.|+++|+|++|||+|+||++|+||+|+|+.+..+.
T Consensus 83 ~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v~i~~~el~~a~~~~~~~~itV~f~~~~i~~~rd~~G~vveG~~~~~~~v~ 162 (194)
T 2cw9_A 83 DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML 162 (194)
T ss_dssp HHBCHHHHHHHHHHHHHHHHTTCEECCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCccccEEEEecccEEEEEEEeCCeeEEEEEEEEEEEEEEECCCCCEecCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCccccCCCCCCCCeEEeeeeccccccC
Q 011958 439 YAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQAL 473 (474)
Q Consensus 439 yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~a~ 473 (474)
|+|+|+|+ ....+| +++|+|++|+|+++..+
T Consensus 163 e~W~f~R~-~~~~~p---~~~W~L~~iq~~~~~~~ 193 (194)
T 2cw9_A 163 YVWALCRD-QDELNP---YAAWRLLDISASSTEQI 193 (194)
T ss_dssp EEEEEEEC-TTCSCG---GGCEEEEEEEEEECTTC
T ss_pred EEEEEEEe-CCCCCC---CCCEEEEEEcccccccc
Confidence 99999884 443222 23599999999988654
No 3
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=86.00 E-value=2.7 Score=36.91 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHHHHH--HH-----HHHHHHHHhCCCccc---ce--EEeecceeEEEEEEeC-
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPEVIE--RC-----KAEHTAYQSHGIFFD---NR--ILHVSEVEVRETKMMG- 402 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea~yn--~l-----~~~Ik~r~~~G~~~d---~k--IL~I~~veIv~ak~~~- 402 (474)
+....+....++|+..||.+.+..+|+|++-- -. ..-+...+. .++ .+ ...+.+. .+.+.+
T Consensus 12 ~eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~~~~g~~~~r~---~f~~~~~~~~~~~~~~~---~V~~~g~ 85 (143)
T 2f86_B 12 QDIVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRF---YFDGNRKNQVHTTMLNP---NVHIIGE 85 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHT---TSSSCSCCSCEEEEEEE---EEEEETT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCccccCHHHHHH---HHhcccCCcceeEEEcc---eEEEeCC
Confidence 34445556689999999999999888776531 11 011222210 011 11 1122222 233456
Q ss_pred CeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeeccccc
Q 011958 403 SSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQ 471 (474)
Q Consensus 403 ~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~ 471 (474)
+.++++-...++ ..+.+|+-+.+ -.+.+.+|. +. ..+|+++-++..+..
T Consensus 86 d~Av~~y~~~~~----~~~~~G~~~~~----~~r~T~V~~--k~----------~g~WkivH~H~S~~~ 134 (143)
T 2f86_B 86 DAACVAYVKLTQ----FLDRNGEAHTR----QSQESRVWS--KK----------QGRWVCVHVHRSTQP 134 (143)
T ss_dssp TEEEEEEEEEEE----EECTTSCEEEE----EEEEEEEEE--EE----------TTEEEEEEEEEEC--
T ss_pred CEEEEEEEeeee----eccCCCCeeeE----EEEEEEEEE--Ee----------CCcEEEEEEeECCCC
Confidence 677777444444 44445654432 134444444 43 246999999876653
No 4
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=84.91 E-value=2.1 Score=36.42 Aligned_cols=98 Identities=7% Similarity=-0.027 Sum_probs=57.5
Q ss_pred HhcCCCCChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHHHHHHHHHHHHHhCC-CcccceEEeecceeEEEEEEe
Q 011958 323 RRRDPSFSLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVIERCKAEHTAYQSHG-IFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 323 k~~DPsFd~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~yn~l~~~Ik~r~~~G-~~~d~kIL~I~~veIv~ak~~ 401 (474)
+.++..||.+.-.+.|++ +++-+..||.+.++.+|++.+-+.+..+.-. .-.. ..--..+..+.++.+.... .
T Consensus 5 ~~l~~~fde~~v~~~A~~----~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~~~G~f~s~~~~~~~~~~-~ 78 (114)
T 4hyz_A 5 KELPEGFDKETVRKQAME----DIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILEKQGEFKEFGKCTYLGQI-K 78 (114)
T ss_dssp SSCCTTCCHHHHHHHHHH----HHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHHTTCSEEEEEEEEEEEEE-E
T ss_pred hcCChhhhHHHHHHHHHH----HHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHHhcCCceeeeceeeeeec-c
Confidence 567889999977777764 5566677999999999999985554333222 1111 0123466777777765543 3
Q ss_pred CCeeEEEEEEEE------eEEEEEEcCCCCe
Q 011958 402 GSSPIIIVAFQT------QQIYCVRDKHGTI 426 (474)
Q Consensus 402 ~~~pvitVrF~a------QqI~~vRDk~GeV 426 (474)
++....+|-+.+ -...++.|++|+|
T Consensus 79 ~~~~y~vv~~~~~ye~~~~~f~i~Fd~d~kl 109 (114)
T 4hyz_A 79 DNKKYGGVIIVVKYEEGNVNYSLAYDEDMNL 109 (114)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEEECTTSCE
T ss_pred CCCceEEEEEEEEEeccceEEEEEECCCCcE
Confidence 444444444333 2233444555554
No 5
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=84.00 E-value=9.4 Score=33.08 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHHH------------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEE-eCC
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEVI------------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKM-MGS 403 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~y------------n~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~-~~~ 403 (474)
..++.+.....||.+||.+.|..+++|++- ..+.+-+..+-. +....+. +.+ .+..+.+ .++
T Consensus 7 aI~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~-~~~~~~~-~~~---~~~~i~~~~~D 81 (146)
T 3gzr_A 7 AIQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLK-TIFKDCK-QEL---VTIEARTIAPG 81 (146)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHH-TTTTTCC-EEE---EEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhh-cccCCCE-EEE---eEEEEEEcCCC
Confidence 345666668899999999999998777651 222233333222 1111222 222 2223333 356
Q ss_pred eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeec
Q 011958 404 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 467 (474)
Q Consensus 404 ~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq 467 (474)
.+++..+|...- .....|..+ | .....+.|+|+|. ...|+|+..+-
T Consensus 82 ~A~v~~~~~l~g---~~~~~G~~~---~--~~~~~~t~v~vr~----------dg~WrI~a~h~ 127 (146)
T 3gzr_A 82 SALAVVTLIQDA---YVTPDGRQM---P--RAHDRLTLLAVER----------EGVWRFIHGHN 127 (146)
T ss_dssp EEEEEEEEEECC---EECTTCCEE---C--CEEEEEEEEEEEE----------TTEEEEEEEEE
T ss_pred EEEEEEEEEecc---eeCCCCCcC---C--ccCcEEEEEEEEE----------CCEEEEEEEec
Confidence 777766654321 122344322 1 1345677888775 25799998764
No 6
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=82.03 E-value=18 Score=30.15 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
+..+.......+||.+||.+.|..+++++
T Consensus 13 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~d 41 (143)
T 2ux0_A 13 QEIIKITEQLIEAINNGDFEAYTKICDPG 41 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 34556666689999999999999988776
No 7
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=81.10 E-value=20 Score=28.78 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHHHH------------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCC
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPEVI------------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGS 403 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea~y------------n~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~ 403 (474)
...+..+....+||..||++.|..+++|++. ..+.+-....-..|. .-+.+. ...+...++
T Consensus 6 ~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~----~~~~~~---~~~v~~~gd 78 (129)
T 3hx8_A 6 EAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGI----SELKLT---TLDVQESGD 78 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTC----EEEEEE---EEEEEEETT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCC----ceEEEE---EEEEEcCCC
Confidence 4455666668899999999999998876531 122222332222221 122232 233345677
Q ss_pred eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeeccccc
Q 011958 404 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQ 471 (474)
Q Consensus 404 ~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~~ 471 (474)
.++++.++... ....+|+.+. ....|+.+|++. + +..|+++.-.-+..+
T Consensus 79 ~A~~~~~~~~~----~~~~~G~~~~------~~g~~~~v~~r~-~--------dG~W~i~~~~~~~~~ 127 (129)
T 3hx8_A 79 FAFESGSFSLK----APGKDSKLVD------AAGKYVVVWRKG-Q--------DGGWKLYRDIWNSDP 127 (129)
T ss_dssp EEEEEEEEEEE----EECTTSCEEE------EEEEEEEEEEEC-T--------TSCEEEEEEEEEECC
T ss_pred EEEEEEEEEEE----eeCCCCCeee------eeEEEEEEEEEC-C--------CCcEEEEEeeccccc
Confidence 77777666554 2234454221 245677777553 0 257999876554433
No 8
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=80.98 E-value=5.3 Score=34.68 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHHHHH---------HHHH-HHHHhCCC--cccceEEeecceeEEEEEE
Q 011958 333 DFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVIERC---------KAEH-TAYQSHGI--FFDNRILHVSEVEVRETKM 400 (474)
Q Consensus 333 ~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~yn~l---------~~~I-k~r~~~G~--~~d~kIL~I~~veIv~ak~ 400 (474)
+=..+.+.++.....|+..||++.|..++.++..-.| ..+| ..+..... .+...-+.+.++++ +.+
T Consensus 7 ~~~~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--I~v 84 (145)
T 3soy_A 7 TVKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPPA--IHV 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTEEEESHHHHHHHCCCCCCCCTEEEEEEEESSCCE--EEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCCcccCHHHHHHHHHHhhhhccccccceEEeeeeE--EEE
Confidence 3345566677778899999999999999866421111 2333 22221111 12333445555542 244
Q ss_pred eCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeecccc
Q 011958 401 MGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGV 470 (474)
Q Consensus 401 ~~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~ 470 (474)
.++.++++..+.... ....+|..+.+ ...|.-+|+|.. +.+|||+..+-.++
T Consensus 85 ~gd~A~v~~~~~~~~---~~~~~G~~~~~------~~r~T~V~~r~~---------~ggWkIvh~H~S~~ 136 (145)
T 3soy_A 85 YGNAAVAEFDWHFTA---VRRDNGQTQHT------TGRESQVWAKIP---------NTGWRIVHVHYSGP 136 (145)
T ss_dssp ETTEEEEEEEEEEEE---EETTTCCEEEE------EEEEEEEEEEET---------TTEEEEEEEEEECC
T ss_pred cCCEEEEEEEEEEEE---EEcCCCCeeee------EEEEEEEEEEcC---------CCCEEEEEEecCCC
Confidence 577766654432221 12234543332 344555554521 25799999886443
No 9
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=80.72 E-value=32 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
....+.....+||.+||.+.|..+.+++.
T Consensus 13 ~I~~~~~~~~~A~~~gD~~~l~alwa~d~ 41 (170)
T 3cnx_A 13 QVGLANTAFYEAMERGDFETLSSLWLTPA 41 (170)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHBCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcCCc
Confidence 34455556789999999999988666554
No 10
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=80.61 E-value=10 Score=32.62 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHHHHHH-------H--HHHHHHHHhCCCcccc-eEEeecceeEEEEEEeCCee
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPEVIER-------C--KAEHTAYQSHGIFFDN-RILHVSEVEVRETKMMGSSP 405 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea~yn~-------l--~~~Ik~r~~~G~~~d~-kIL~I~~veIv~ak~~~~~p 405 (474)
..++..+....+||..||.+.|..++++++.-. + ...|.++-...+.... -.+.+..+++ ..++.+
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~----~~gd~A 95 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRL----LDDDSA 95 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE----CSSSEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEE----ecCCeE
Confidence 445666666889999999999999877654100 0 1333333222111111 1223333322 125666
Q ss_pred EEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeeccc
Q 011958 406 IIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLG 469 (474)
Q Consensus 406 vitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g 469 (474)
+++..+... ..+.+|..+ .....|..+|+|. +..|+|+..+-..
T Consensus 96 ~~~~~~~~~----~~~~~G~~~------~~~~r~t~v~~r~----------dG~WkIv~~H~S~ 139 (156)
T 3h51_A 96 VDAGVYTFT----LTDKNGKKS------DVQARYTFVYEKR----------DGKWLIINHHSSA 139 (156)
T ss_dssp EEEEEEEEE----EECTTSCEE------EEEEEEEEEEEEE----------TTEEEEEEEEEEE
T ss_pred EEEEEEEEE----EEcCCCCeE------EEEeEEEEEEEEE----------CCEEEEEEEeecC
Confidence 666555443 234445422 2345777777664 2579999876543
No 11
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=80.51 E-value=18 Score=30.22 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
..+..+....+||..||.+.|..+++++
T Consensus 9 ~I~~l~~~~~~A~~~~D~~~~~~l~a~D 36 (142)
T 3f7s_A 9 EIRQLIERWMQAVRDRDIPGIIAPYADD 36 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCC
Confidence 3455566678899999999999988775
No 12
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=77.76 E-value=26 Score=29.88 Aligned_cols=29 Identities=7% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
..+..+.....||..||.+.|..+++|+.
T Consensus 20 ~i~~l~~~y~~A~~~~D~d~~~~lf~~Da 48 (143)
T 4i4k_A 20 AVAALPARIVAAWADHDADRFADVFAEDG 48 (143)
T ss_dssp HHHTHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhcCc
Confidence 44556666889999999999998876654
No 13
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=76.68 E-value=9.5 Score=30.61 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
+..........+|+.+||.+.|..+|+|++
T Consensus 6 ~~i~~l~~~~~~A~~~~D~~~l~~l~~~d~ 35 (123)
T 2r4i_A 6 DVILDCEKKLLTAIQNNDVESLEVLLHDDL 35 (123)
T ss_dssp HHHTHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhhCcCe
Confidence 344555666889999999999999988763
No 14
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=75.47 E-value=19 Score=30.53 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
.++..+....+||..||.+.|..+++|++
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da 59 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANV 59 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCe
Confidence 44556666788999999999999888763
No 15
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=74.94 E-value=13 Score=31.26 Aligned_cols=106 Identities=11% Similarity=0.197 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHHHHHH--------HHHHHHHHHhCCCcccceEEeecceeEEEEEEeCC-eeE
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPEVIER--------CKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGS-SPI 406 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea~yn~--------l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~-~pv 406 (474)
+...+.+....+|+.+||.+.|..+|+|++.-. -..-+..... |. .....+ .+....+...++ .++
T Consensus 14 ~~I~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~G~~~~~~~~l~~~~~-g~---~~~~~~-~~~~~~v~~~g~d~Av 88 (134)
T 3fsd_A 14 DDIAFYEERLRAAMLTGDLKGLETLLADDLAFVDHTGCVKTKQTHLEPYRA-GL---LKLSRL-DLSDAVVRAAGEDGRV 88 (134)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTSCEECHHHHHHHHHT-TC---EEEEEE-EEEEEEEEESSTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCCCcCccHHHHHHHHHc-CC---ceEEEE-EEeccEEEEeCCCEEE
Confidence 345666677899999999999999988764311 1223333332 21 122222 223334455666 777
Q ss_pred EEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCC--eEEeeeec
Q 011958 407 IIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPI--WKLREMQQ 467 (474)
Q Consensus 407 itVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~--WrL~eiqq 467 (474)
++.++... ....|.... ...+.+.+|. |. ..+ |+|+..|.
T Consensus 89 v~~~~~~~-----~~~~g~~~~----~~~~~t~vw~--k~----------~g~~gWriv~~h~ 130 (134)
T 3fsd_A 89 VVVRAVTA-----GVYDGEAFT----ETLRFTRIWR--RT----------QGPAGWKLVAGHC 130 (134)
T ss_dssp EEEEEEEE-----EEETTEEEE----EEEEEEEEEE--EE----------TTTTEEEEEEEEE
T ss_pred EEEEEEEE-----EEeCCcEEE----EEEEEEEEEE--EC----------CCCccceEeEeEE
Confidence 77666542 111232211 1234677774 43 246 99998765
No 16
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=74.58 E-value=27 Score=30.12 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 339 QEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 339 r~~~ipIleAy~kGDle~LK~~csea 364 (474)
+++.....+||.+||++.|..+.+++
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d 36 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARD 36 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCC
Confidence 44445578999999999998877665
No 17
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=73.31 E-value=32 Score=27.78 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
.++..+....+||..||.+.|..+++|+
T Consensus 12 ~i~~~~~~~~~a~~~~D~~~~~~l~a~D 39 (135)
T 3d9r_A 12 VIEAAAIAYLTAFNRADIPAVIATYTDD 39 (135)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCC
Confidence 3555666678899999999999887665
No 18
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=68.56 E-value=56 Score=27.99 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHHHH-----------HHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeE
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPEVI-----------ERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPI 406 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea~y-----------n~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~~pv 406 (474)
.+..+....+|+..||.+.|..+++|++. ..+.+....... .-.+.+ ..++..+.+.++.++
T Consensus 19 I~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~~~~Gr~ai~a~~~~~~~------~~~~~~-~~~~~~i~v~GD~A~ 91 (139)
T 3rob_A 19 IRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGRLPFGKEEFLAACEQNDQ------RVIIEA-SATFEEIVIVEPMAY 91 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCBCHHHHHHHHHHHHH------HEEEEE-EEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCCCccCHHHHHHHHHHHHH------hcCCCC-ceEEEEEEEcCCeEE
Confidence 44455557788899999999987766543 111111111111 011222 344555566788777
Q ss_pred EEEEEEEeEEEEEEcC-CCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEee
Q 011958 407 IIVAFQTQQIYCVRDK-HGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 407 itVrF~aQqI~~vRDk-~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
++-.+... ..+. .|.. ......++++|+|.. +..|+|.-
T Consensus 92 ~~~~~~~~----~t~~~~g~~------~~~~g~~~~v~rK~~---------dG~W~i~~ 131 (139)
T 3rob_A 92 TRTHLHIK----VTPRSGGAV------RELAGHAMSIFRRSM---------FGEWQLAR 131 (139)
T ss_dssp EEEEEEEE----EEETTSCCC------EEEEEEEEEEEEECT---------TSCEEEEE
T ss_pred EEEEEEEE----EecCCCCce------eEeeccEEEEEEECC---------CCcEEEEE
Confidence 76666654 4443 3332 223456888886621 36799863
No 19
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=68.18 E-value=52 Score=27.43 Aligned_cols=89 Identities=8% Similarity=-0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhccHHHHHhccCHHH--------------HHHHHHHHHHHHh-CCCcccceEEeecceeEEEEEEeCC
Q 011958 339 QEAIRPVLSAYMKANVETLKKYCSPEV--------------IERCKAEHTAYQS-HGIFFDNRILHVSEVEVRETKMMGS 403 (474)
Q Consensus 339 r~~~ipIleAy~kGDle~LK~~csea~--------------yn~l~~~Ik~r~~-~G~~~d~kIL~I~~veIv~ak~~~~ 403 (474)
++.+..-.+++.+||.+.|+.-++|++ ...|.. +....+ .|.....+| ..+.+.++
T Consensus 12 ~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~~~~~i--------~~I~i~gd 82 (120)
T 3fka_A 12 TALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELLWNSRDAFIA-MCEDAADAETDPFWAI--------SSVSVQGD 82 (120)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCCCCEEE--------EEEEEETT
T ss_pred HHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCCceEEE--------EEEEEECC
Confidence 334444567778899999999888877 456666 653221 111212223 33344567
Q ss_pred eeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeee
Q 011958 404 SPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREM 465 (474)
Q Consensus 404 ~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~ei 465 (474)
.+.+.|.+.- . ...+.+..+|.+. +..|+|+.-
T Consensus 83 ~A~a~v~~~~--------------~-----~~~f~D~~~L~k~----------dg~WkIv~K 115 (120)
T 3fka_A 83 IAMLHVENDW--------------A-----GMRFDDFLTVLLH----------EGSWRIVSK 115 (120)
T ss_dssp EEEEEEEEEE--------------T-----TEEEEEEEEEEEE----------TTEEEEEEE
T ss_pred EEEEEEEEEc--------------C-----CCceEEEEEEEEe----------CCEEEEEEE
Confidence 7777776321 1 1367899999885 367999863
No 20
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=66.88 E-value=35 Score=28.68 Aligned_cols=90 Identities=9% Similarity=0.102 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHHH---------------HHHHHHHHHHHHhCCCcccceEEeecceeEEEEEEeC
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPEV---------------IERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG 402 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea~---------------yn~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~ 402 (474)
.++.+....+++.+||.+.|+..++|++ +..|...+..+ .. ..... ..|..+.+.+
T Consensus 14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~G~~l~~~~~~e~~~~v~~~-~p--~~~~~------~~I~~I~i~g 84 (125)
T 3duk_A 14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSN-GP--AKNVQ------SRITNIDIVG 84 (125)
T ss_dssp HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEETTEEEEEEETHHHHHHHHHH-CC--CTTCE------EEEEEEEEET
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcCCCEEeeCCHHHHHHHHhcc-CC--CCccc------ceEEEEEEEC
Confidence 4444444678888999999999988876 24455555544 11 11111 1344556667
Q ss_pred CeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEee
Q 011958 403 SSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLRE 464 (474)
Q Consensus 403 ~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~e 464 (474)
+.+.+.|.+.. -. | ..+.++.+|.+. +..|+|+.
T Consensus 85 d~A~a~v~~~~--------~~-----~-----~~f~D~l~L~k~----------dg~WkIv~ 118 (125)
T 3duk_A 85 TVAHARVEAEN--------WT-----N-----FKFSDLFLLLKL----------DGKWTIVN 118 (125)
T ss_dssp TEEEEEEEEEC--------SS-----S-----CCEEEEEEEEEE----------TTEEEEEE
T ss_pred CEEEEEEEEEE--------cC-----C-----CeEEEEEEEEEe----------CCEEEEEE
Confidence 77777765421 00 1 256888999775 36799986
No 21
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=63.62 E-value=27 Score=29.03 Aligned_cols=94 Identities=9% Similarity=-0.007 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHHHH---------------HHHHHHHHHHhCCCcccceEEeecceeEEEEEEe
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEVIE---------------RCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMM 401 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~yn---------------~l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~ 401 (474)
..++.+....+|+.+||.+.|+..++|++.- .|...+. ..........-. |..+.+.
T Consensus 13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----i~~i~i~ 84 (128)
T 3blz_A 13 AIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVID---NVFHPSPEAKAA-----IARIDIV 84 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHH---HTCCCCTTCEEE-----EEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcEEecCHHHHHHHHH---hcCCCCccccCe-----EEEEEEE
Confidence 4455556678999999999999988887432 2222222 110011111111 3445666
Q ss_pred CCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeee
Q 011958 402 GSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQ 466 (474)
Q Consensus 402 ~~~pvitVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiq 466 (474)
++.+.+.+.+. ...| ....+.|+|.|. +..|+|+...
T Consensus 85 gd~A~a~~~~~-------------~~~~-----~~~~d~~~l~k~----------dg~WkI~~~~ 121 (128)
T 3blz_A 85 GTAASARIDTD-------------DISG-----FRFTDFFNLLKV----------EGKWTVVSKI 121 (128)
T ss_dssp TTEEEEEEEEE-------------EETT-----EEEEEEEEEEEE----------TTEEEEEEEE
T ss_pred CCEEEEEEEEE-------------EcCC-----CceEEeEEEEEE----------CCEEEEEEEE
Confidence 78888887773 0111 245778899775 2579998753
No 22
>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}
Probab=61.37 E-value=33 Score=29.64 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=55.3
Q ss_pred HHHHHHhccHHHHHhccCHHHHHH--------HHHHHHHHHhCCCcccceEEeecceeEEEEEEeCCeeEEEEEEEEeEE
Q 011958 345 VLSAYMKANVETLKKYCSPEVIER--------CKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQI 416 (474)
Q Consensus 345 IleAy~kGDle~LK~~csea~yn~--------l~~~Ik~r~~~G~~~d~kIL~I~~veIv~ak~~~~~pvitVrF~aQqI 416 (474)
-..|..+||.+.|..+++++.... -..-|......|.. ....++..+. .+.+.++.++++.+....-
T Consensus 18 ~~~A~~~~D~~~L~~LL~ddf~~v~~sG~~~~K~~~L~~~~~~~~~-~~~~~~~~~~---~vr~~gd~AvVt~~~~~~~- 92 (129)
T 3ksp_A 18 RHAYLMEGNREAMHQLLSSDFSFIDGQGRQFDAETYLDHYVDPDQI-QWSNQISESM---VVEVFETTALVQEIVEDHF- 92 (129)
T ss_dssp HHHHHHHTCHHHHHHHEEEEEEEECTTCCEECHHHHHHHHSCTTTE-EEEEEEEEEE---EEEECSSEEEEEEEEEEEE-
T ss_pred HHHHHHhCCHHHHHhhcCCCEEEECCCCCCcCHHHHHHHhccCCCc-cceeecccce---eEEEECCEEEEEEEEEEEE-
Confidence 667899999999999998875421 13334433333321 1222222222 4455677777777655431
Q ss_pred EEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeec
Q 011958 417 YCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 467 (474)
Q Consensus 417 ~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq 467 (474)
.. .|+.+.|. ..+..+|.. . ..+|+|+.-|-
T Consensus 93 --~~--~g~~~~~~----~~~t~VW~~--~----------~g~Wrlva~q~ 123 (129)
T 3ksp_A 93 --SY--GRSMYIGR----FRSVSLYHW--A----------NEGWKWHFHQL 123 (129)
T ss_dssp --EE--TTEEEEEE----EEEEEEEEE--E----------TTEEEEEEEEE
T ss_pred --ec--CCeEEeEE----EEEEEEEEE--e----------CCeeEEEEEee
Confidence 11 34433322 457888843 3 26799998764
No 23
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=59.29 E-value=34 Score=30.65 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHHHHHH----------------HHHHHHHHhCCCc----ccceEEeecceeEE
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEVIERC----------------KAEHTAYQSHGIF----FDNRILHVSEVEVR 396 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~yn~l----------------~~~Ik~r~~~G~~----~d~kIL~I~~veIv 396 (474)
.+++.+..-..|++.+|.+.+..+++|++.=.+ ...|.+.-..... .....-.+.++.|
T Consensus 27 ~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~I- 105 (179)
T 3ejv_A 27 IILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPII- 105 (179)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCEE-
Confidence 344455556788899999999998887653111 3455555332221 1222223444444
Q ss_pred EEEEeCCeeEEEEEEEEeEEEEEEcCCCC---eecCCC---CceeeEEEEEEEEEeCccccCCCCCCCCeEEeeee
Q 011958 397 ETKMMGSSPIIIVAFQTQQIYCVRDKHGT---ITEGGK---DTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQ 466 (474)
Q Consensus 397 ~ak~~~~~pvitVrF~aQqI~~vRDk~Ge---VVEGd~---d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiq 466 (474)
.+.++.+++++++.....+...+.+|. ++-|.- .-+..-.|.-.|+|. ..+|+|....
T Consensus 106 --~vdgD~A~~~~~~y~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~g~Y~D~~~R~----------dg~Wri~~r~ 169 (179)
T 3ejv_A 106 --VIEGDHAVLDAQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTV----------ADGWVISAMR 169 (179)
T ss_dssp --EEETTEEEEEEEEEEEEEEECCCCTTCCCTTCCSCCEEEEEEEEEEEEEEEEEE----------TTEEEEEEEE
T ss_pred --EEcCCeeEEEEEEEEEEEEeeccCCCCCcceeecccccccccccceEEEEEEEE----------CCeEEEEEEE
Confidence 346777755666555444433322332 111111 123344588888775 2569998864
No 24
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=54.73 E-value=43 Score=27.93 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHHH-HHH-------HHHHHHHHHhCCCc-ccce-EEeecceeEEEEEEeCCeeE
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPEV-IER-------CKAEHTAYQSHGIF-FDNR-ILHVSEVEVRETKMMGSSPI 406 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea~-yn~-------l~~~Ik~r~~~G~~-~d~k-IL~I~~veIv~ak~~~~~pv 406 (474)
..++.+....+||..||.+.|-.+++|++ +-. =..+|.++-..-.. +... .+.+.++. +...++.++
T Consensus 4 ~I~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~---v~~~gd~A~ 80 (142)
T 2gxf_A 4 QLKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMI---LLEAGDTVL 80 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEE---EEEETTEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCCcccCHHHHHHHHHHHHHhhCCCceEEEEEEE---EEEcCCEEE
Confidence 34566666889999999999988877743 200 02334433222111 0111 11222222 234567777
Q ss_pred EEEEEEEeEEEEEEcCCCCeecCCCCceeeEEEEEEEEEeCccccCCCCCCCCeEEeeeecccc
Q 011958 407 IIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGV 470 (474)
Q Consensus 407 itVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~yvW~f~r~d~eel~~~~~~~~WrL~eiqq~g~ 470 (474)
++..+... .+.+|. +- .....|+.+|++.. +..|+++-=.-.|.
T Consensus 81 ~~~~~~~~-----~~~~G~-----~~-~~~g~~t~v~~r~~---------dG~Wri~~d~~~~~ 124 (142)
T 2gxf_A 81 VLSQTLLD-----SDKKDS-----EY-AMERRATYVFKKNA---------QGEWLCVIDNSYGT 124 (142)
T ss_dssp EEEEEECC-----C---------------EEEEEEEEEECT---------TSCEEEEEEETTGG
T ss_pred EEEEEEEE-----ECCCCC-----eE-eeeEEEEEEEEECC---------CCCEEEEEECCCCc
Confidence 76665532 123333 21 23456788886621 25699976655554
No 25
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=47.70 E-value=78 Score=26.75 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhccHHHHHhccCHHHH
Q 011958 330 SLPDFVSEVQEAIRPVLSAYMKANVETLKKYCSPEVI 366 (474)
Q Consensus 330 d~~~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~y 366 (474)
|.+.=......+|...-.|+..+|++.|-.++++++.
T Consensus 5 ~~~~~~~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~ 41 (129)
T 2owp_A 5 NQPDIVAQVQAAFVEYERALVENDIEAMNALFWHTPE 41 (129)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTCHHHHHHTBCCSTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCCHHHHHhhccCCCc
Confidence 3445566777888888999999999999999888863
No 26
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=44.00 E-value=1.5e+02 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 336 SEVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 336 ~~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
...+..+.....||..||.+.+..+++++
T Consensus 16 ~aI~~~~~~~~~A~~~~D~d~~~~lfa~D 44 (172)
T 3cu3_A 16 SAIRAFHRQMIDAWNRGSGEGFAAPFSET 44 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCC
Confidence 34556666688999999999999876665
No 27
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=41.89 E-value=54 Score=26.64 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
.++.+....+||..||++.|..+|+|++
T Consensus 5 ~~~~v~~~~~~~~~~d~~~~~~~~a~d~ 32 (128)
T 3ehc_A 5 LNDIYLAYLDSLNHQAFDELGTFVDDNV 32 (128)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGTEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCcce
Confidence 3555666778999999999999998753
No 28
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=37.69 E-value=1.3e+02 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
.++.+....+||..||++.|..+++|+
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D 32 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPD 32 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 455666678899999999999988764
No 29
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=37.16 E-value=1.6e+02 Score=23.71 Aligned_cols=29 Identities=3% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhcc--CHHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYC--SPEV 365 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~c--sea~ 365 (474)
..+..+....+||.+||++.|-.+. +|++
T Consensus 6 ~I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~ 36 (122)
T 3b7c_A 6 DIVQLLKGQEEAWNRGDLDAYMQGYWQNEQL 36 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTBCCSTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcCCCCE
Confidence 3455555689999999999987754 4543
No 30
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=32.54 E-value=2.3e+02 Score=24.02 Aligned_cols=27 Identities=7% Similarity=-0.040 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
+++.+..-..|+..+|.+.+..+++|+
T Consensus 16 I~~l~~~y~~a~D~~D~~~~~~lf~~D 42 (170)
T 2chc_A 16 IQALCARYCLTINTQDGEGWAGCFTED 42 (170)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHhcccCc
Confidence 334444456788899999999877655
No 31
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=31.91 E-value=13 Score=31.56 Aligned_cols=33 Identities=0% Similarity=0.034 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 333 DFVSEVQEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 333 ~Fl~~ar~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
+=+..++++|...++|+..||++.|..+++|++
T Consensus 9 ~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~ 41 (134)
T 3dmc_A 9 NTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDF 41 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCE
Confidence 335677888888999999999999998886643
No 32
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=30.26 E-value=2.3e+02 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 337 EVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 337 ~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
.+++.+..-..|+..||.+.+..+++|+
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~D 47 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVED 47 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCc
Confidence 3444555567788899999999877764
No 33
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=30.21 E-value=88 Score=26.81 Aligned_cols=29 Identities=7% Similarity=0.291 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH-HHHhccHHHHHhccCHHH
Q 011958 337 EVQEAIRPVLS-AYMKANVETLKKYCSPEV 365 (474)
Q Consensus 337 ~ar~~~ipIle-Ay~kGDle~LK~~csea~ 365 (474)
.-++.+....+ ||..||++.|..||+++.
T Consensus 28 ~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~ 57 (148)
T 3g0k_A 28 ANHDLVIEMYNKVLIAMDSSAVDRYIAPGY 57 (148)
T ss_dssp HHHHHHHHHHHHTTTTTCGGGGGGTEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCcCe
Confidence 34555666665 899999999999987764
No 34
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=30.02 E-value=2.2e+02 Score=23.07 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 335 VSEVQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 335 l~~ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
+..+...|.....|+..||++.|..+.+++
T Consensus 13 ~~ei~~~~~~y~~A~~~~D~~~l~~lf~~d 42 (129)
T 2rcd_A 13 LADVTAAFYRYEKALTGNDVAVLDELFWHD 42 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCS
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhccCC
Confidence 455666677777999999999999988876
No 35
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=27.91 E-value=2.6e+02 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHhccCHH
Q 011958 338 VQEAIRPVLSAYMKANVETLKKYCSPE 364 (474)
Q Consensus 338 ar~~~ipIleAy~kGDle~LK~~csea 364 (474)
.++.+....+||..||++.|..+|+|+
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D 32 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPD 32 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 455566688899999999999988764
No 36
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=26.30 E-value=21 Score=29.52 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 339 QEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 339 r~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
++.....++||..||++.|..+|+|++
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dv 35 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENF 35 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCe
Confidence 445555788999999999999998865
No 37
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=26.28 E-value=2.8e+02 Score=22.96 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhccHHHHHhccCHHH
Q 011958 339 QEAIRPVLSAYMKANVETLKKYCSPEV 365 (474)
Q Consensus 339 r~~~ipIleAy~kGDle~LK~~csea~ 365 (474)
+..+....+||.+||++.|..+|+|++
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv 33 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNI 33 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCe
Confidence 344455778999999999999886654
No 38
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=23.24 E-value=1e+02 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHhhhChhhHHHHHHHHHHHHHH
Q 011958 56 IKGEAESNPEFKHSVKELKKKAEEI 80 (474)
Q Consensus 56 ik~E~~kn~E~qe~ik~l~e~a~kl 80 (474)
+++|..| |-+.-|+|-+++.+|
T Consensus 4 lreeaak---lfeewkklaeeaakl 25 (62)
T 2i7u_A 4 LREEAAK---LFEEWKKLAEEAAKL 25 (62)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444443 344556666666666
No 39
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=22.34 E-value=1e+02 Score=21.76 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHH
Q 011958 64 PEFKHSVKELKKKAEEIKGVKEELK 88 (474)
Q Consensus 64 ~E~qe~ik~l~e~a~kl~~~~e~lk 88 (474)
+||+.-|.+|.+.-.+|+.-+|-||
T Consensus 6 kelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 5788888888888888888777665
No 40
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.06 E-value=5.4e+02 Score=24.78 Aligned_cols=17 Identities=6% Similarity=0.274 Sum_probs=8.3
Q ss_pred HHHHhhHHHHHHHHHhh
Q 011958 86 ELKERTKQTTEQLYKQV 102 (474)
Q Consensus 86 ~lk~r~~~~a~~~~k~v 102 (474)
.|+.|+..-++.+...+
T Consensus 70 elr~kL~p~~~el~~~l 86 (273)
T 3s84_A 70 QLRRQLTPYAQRMERVL 86 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554433
Done!