BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011959
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 625 bits (1612), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/427 (69%), Positives = 347/427 (81%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 6 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 65
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 66 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 125
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLRL RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 126 CMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 185
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 186 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 245
Query: 288 VMTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
VMTGFR+AYGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 246 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 305
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 306 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 365
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 366 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 425
Query: 468 EKVLRQI 474
V+ +
Sbjct: 426 RTVMSAL 432
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 624 bits (1608), Expect = e-179, Method: Compositional matrix adjust.
Identities = 295/427 (69%), Positives = 347/427 (81%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 6 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 65
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 66 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 125
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLR+ RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 126 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 185
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 186 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 245
Query: 288 VMTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
VMTGFR+AYGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 246 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 305
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 306 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 365
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 366 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 425
Query: 468 EKVLRQI 474
V+ +
Sbjct: 426 RTVMSAL 432
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 623 bits (1607), Expect = e-179, Method: Compositional matrix adjust.
Identities = 295/427 (69%), Positives = 347/427 (81%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLR+ RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
VMTGFR+AYGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 622 bits (1605), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/427 (69%), Positives = 347/427 (81%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLRL RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
V+TGFR+AYGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 622 bits (1603), Expect = e-178, Method: Compositional matrix adjust.
Identities = 294/427 (68%), Positives = 347/427 (81%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLR+ RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
V+TGFR+AYGG QE FGVTPD PVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 611 bits (1575), Expect = e-175, Method: Compositional matrix adjust.
Identities = 292/411 (71%), Positives = 343/411 (83%)
Query: 64 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 123
MPGGV+SPVRAFKSVGGQPIVFD VKG+H+WD+DGN+YIDYVGSWGPAI+GHA +V+ A
Sbjct: 1 MPGGVSSPVRAFKSVGGQPIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDA 60
Query: 124 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 183
L ++KGTSFGAPCLLEN+LAEMVI+AVPS+EMVRFVNSGTEACM VLRL RA+T RE+
Sbjct: 61 LHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQREK 120
Query: 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243
+IKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK T TLTAP+ND+ A+ LFE
Sbjct: 121 VIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEAVSRLFEQY 180
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 303
+IA +ILEPVVGN+GFI P FL +R +TK+ GALL+FDEVMTGFR+AYGGAQE F
Sbjct: 181 PNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQEKF 240
Query: 304 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
GVTPD PVGAYGGR +IM+MVAPAGP+YQAGTLSGNPLAMTAGI TL+
Sbjct: 241 GVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEI 300
Query: 364 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 423
L PG+YE+L++ITG+L QG++DA ++ GH +CGG+ISGMFG FFT GPV N+E AK+S+
Sbjct: 301 LSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLFFTAGPVTNYEQAKQSD 360
Query: 424 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KFA F+RGMLE+G+Y APSQFEAGFTSLAH+ DI+ TI AA VL Q+
Sbjct: 361 LKKFAAFHRGMLEQGIYLAPSQFEAGFTSLAHTEADIERTIAAARTVLSQL 411
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/426 (55%), Positives = 302/426 (70%), Gaps = 1/426 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
+ +KS+ AF A++LMPGGVNSPVRAFKSV PI + KGS ++DIDGNEYIDYV SW
Sbjct: 11 SYEKSKTAFKEAQKLMPGGVNSPVRAFKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSW 70
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I+GH +D+V+ +L + + GTSFGAP +EN LA++VI VPS+E+VR V+SGTEA
Sbjct: 71 GPLILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVIDRVPSVEIVRMVSSGTEAT 130
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M LRLAR +TGR +I+KFEGCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T
Sbjct: 131 MSALRLARGYTGRNKILKFEGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITV 190
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
P+ND+ +++ F+ +IA +I+EPV GN G + P+ FL +R IT++ G+LLIFDEV
Sbjct: 191 PYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEV 250
Query: 289 MTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
MTGFR+ Y AQ YFGVTPD PVGAYGG+ +IME +AP+GP+YQAGTLS
Sbjct: 251 MTGFRVDYNCAQGYFGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLS 310
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNPLAMTAG+ TLK+L P +Y+ K L +GI A + G M GFFF
Sbjct: 311 GNPLAMTAGLETLKQLT-PDSYKNFIKKGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFF 369
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T PV N+E AK S+ FA +Y+GM EGV+ PSQFE F S AH+ +DI++TI AAE
Sbjct: 370 TNEPVINYETAKASDLKLFASYYKGMANEGVFLPPSQFEGLFLSTAHTDEDIENTIQAAE 429
Query: 469 KVLRQI 474
KV +I
Sbjct: 430 KVFAEI 435
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/410 (53%), Positives = 274/410 (66%), Gaps = 1/410 (0%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
KS AF A++L PGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWG
Sbjct: 4 FDKSIAAFEEAQDLXPGGVNSPVRAFKSVGXNPLFXERGKGSKVYDIDGNEYIDYVLSWG 63
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I GHA+D+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA
Sbjct: 64 PLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRXVNSGTEATX 123
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
LRLAR +TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T
Sbjct: 124 SALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVA 183
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND+ +++ FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEV
Sbjct: 184 YNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVX 243
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+AY Q Y+GVTPD PVGAYGG+ +I VAP+GP+YQAGTLSG
Sbjct: 244 TGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSG 303
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NPLA AG TL +L P +Y + L G+ A +K G G FFT
Sbjct: 304 NPLAXAAGYETLVQLT-PESYVEFERKAEXLEAGLRKAAEKHGIPHHINRAGSXIGIFFT 362
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDD 459
+ PV N++ AK S FA +YR +E+GV+ PSQFE F S HS D
Sbjct: 363 DEPVINYDAAKSSNLQFFAAYYREXVEQGVFLPPSQFEGLFLSTVHSDAD 412
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/420 (51%), Positives = 275/420 (65%), Gaps = 2/420 (0%)
Query: 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI 112
SE F AK +PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP I
Sbjct: 6 SEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLI 65
Query: 113 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
+GHA +VLA + ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M L
Sbjct: 66 LGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSAL 125
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
RLAR +TGR I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +ND
Sbjct: 126 RLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYND 185
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
L + + EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMTGF
Sbjct: 186 PEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGF 244
Query: 293 RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352
RLA+GGA E G+ PD P AY GRR+IME VAP GP+YQAGTLSGNPL
Sbjct: 245 RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPL 304
Query: 353 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
AM AG+ TL+ L+E PG Y YL + L G+ + K+ G + M FFTEG
Sbjct: 305 AMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEG 364
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 471
PV F+DA++++T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K L
Sbjct: 365 PVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRKAL 424
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/425 (49%), Positives = 275/425 (64%), Gaps = 1/425 (0%)
Query: 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGP 110
KSE + A++L+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWGP
Sbjct: 5 SKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGP 64
Query: 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170
I+GH + A+ E +++G SFGAP E A++V VP+ + VR VNSGTEA
Sbjct: 65 XILGHNHPAIRQAVIEAVERGLSFGAPTEXEVKXAQLVTDLVPTXDXVRXVNSGTEATXS 124
Query: 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +
Sbjct: 125 AIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY 184
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
ND++++ FE E+A II+EPV GN I P P+FL +R + E GALLI DEV T
Sbjct: 185 NDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXT 244
Query: 291 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
GFR+A GAQ+Y+ V PD PVGA+GGRR++ +AP GP+YQAGTLSGN
Sbjct: 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGN 304
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
P+A AG L + + G YE L ++T L G+ A K+ + ++ G FG FFT
Sbjct: 305 PIAXAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGXFGLFFTN 364
Query: 411 G-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
V ++D + +F RF+ LEEGVY APS FEAGF SLAHS++DIQ T+ AA +
Sbjct: 365 ADTVTCYQDVXNCDVERFKRFFHLXLEEGVYLAPSAFEAGFXSLAHSNEDIQKTVNAARR 424
Query: 470 VLRQI 474
++
Sbjct: 425 CFAKL 429
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/416 (44%), Positives = 265/416 (63%), Gaps = 1/416 (0%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGP 110
KSE A E + GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++GP
Sbjct: 7 KSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAXERGKGAYFWDVDGNKYIDYLAAYGP 66
Query: 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170
I GHA + A+ + G +G P LE A+ + A P+++ VRFVNSGTEA
Sbjct: 67 IITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXT 126
Query: 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
+R+ARA+TGR +I KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T PF
Sbjct: 127 TIRVARAYTGRTKIXKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF 186
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
N+V L+ + E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV+T
Sbjct: 187 NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246
Query: 291 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
FR YGGAQ+ GVTPD P+GAYGG+++I E VAP GP YQAGT +GN
Sbjct: 247 AFRFXYGGAQDLLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGN 306
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
P + +GI L+ L++ G YE L+++ L +GI++ K I + G +FT
Sbjct: 307 PASXASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTT 366
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 466
+ +++ A+ ++ F +F++ L+EGV APS++EA F + H+ +DI++TI A
Sbjct: 367 NTIEDYDAAQDTDGEXFGKFFKLXLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEA 422
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 313 bits (803), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 168/424 (39%), Positives = 241/424 (56%), Gaps = 2/424 (0%)
Query: 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGP 110
+KS F KEL PGGVNSPVRA +V P +G++++ +DG +D V ++GP
Sbjct: 10 EKSRMLFERTKELFPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGP 67
Query: 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170
I+GH +VL A+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA M
Sbjct: 68 LILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMT 127
Query: 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
+RLAR +TGR+ I+KF+GCYHG D LV AGS A G+P S GVP+ TL P+
Sbjct: 128 AIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY 187
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
NDV ALE +F IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV+T
Sbjct: 188 NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT 247
Query: 291 GFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
GFRL GAQ YF + D PVGA G R++M ++ P G ++ AGT + +
Sbjct: 248 GFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAH 307
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
P+ M AG+ TLK L+E Y + L + + + G + M F
Sbjct: 308 PITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGV 367
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
V N A+K++ + + + ML GV+ APS EA FT L H + ++ +
Sbjct: 368 EEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSS 427
Query: 471 LRQI 474
L+ +
Sbjct: 428 LKTV 431
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 192/417 (46%), Gaps = 25/417 (5%)
Query: 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI 112
S+ F MPG + V + P+ +G+ +WD DG+ Y D++ + +
Sbjct: 44 SQRQFEAQARYMPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGV 100
Query: 113 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
GH+ ++ A+ E M+ G + LLE LA ++ P IE +RF NSGTEA + L
Sbjct: 101 YGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMAL 160
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFN 231
A FTGR +I+ F G YHG GV G SP VP ++ L P+N
Sbjct: 161 TAALHFTGRRKIVVFSGGYHG-----------GVLGFGARPSPTTVP----FDFLVLPYN 205
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D E + EIA +++EP+ G SG I +PDFL A+R + GALL+FDEVMT
Sbjct: 206 DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS 265
Query: 292 FRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGN 350
RLA G G+ D GA+GGR D+M + P GP+ +GT + N
Sbjct: 266 -RLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNN 324
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA-GKKAGHAICGGYISGMFGFFFT 409
+ M AG L +L P L + GE + ++A G A+ I + F
Sbjct: 325 VMTMAAGYAGLTKLFTPEAAGALAE-RGEALRARLNALCANEGVAMQFTGIGSLMNAHFV 383
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 466
+G V + ED + + +L E +Y +P F SL + DI + A
Sbjct: 384 QGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRGFVV--LSLPLTDADIDRYVAA 438
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 185/388 (47%), Gaps = 24/388 (6%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
A+ MPGG + + P+V GS D+DG+ Y++++G + + GH+
Sbjct: 64 ARRSMPGGNTRSILFHRPF---PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPV 120
Query: 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179
+ AA+ + G + E + AE V PSI++VRF NSGTEA + L A A T
Sbjct: 121 IRAAVERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAIT 180
Query: 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
GR+ ++ F+G YHG L+ SG A P A Y + +NDV +L
Sbjct: 181 GRKTVLAFDGGYHGG----LLNFASGHA----------PTNAPYHVVLGVYNDVEGTADL 226
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
+ + + AAI++EP++G G + + FL+ +R GALLIFDEVMT RL+ GGA
Sbjct: 227 LKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGA 285
Query: 300 QEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAG 357
QE G++ D GA+GGRRD+ME PA G AGT + N L M+AG
Sbjct: 286 QEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAG 345
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGI--IDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415
L ++ L+ + I +A G + + F+ P+ +
Sbjct: 346 HAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTG--LGSLGTIHFSRAPIRS 403
Query: 416 FEDAKKSETTKFARFYRGMLEEGVYFAP 443
D + ++ F+ ML +G+Y AP
Sbjct: 404 AGDVRAADQQLKELFFFHMLRKGIYLAP 431
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 171 bits (433), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 132/427 (30%), Positives = 199/427 (46%), Gaps = 24/427 (5%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
A+ +MP GV + RAF G + +G H D+DGN Y+D+ G G ++GH +
Sbjct: 21 ARSVMPDGVTADTRAFDPHG---LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPR 77
Query: 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179
V AA+ E + G + A LE AE +++A PSI +RF SGTE + LR+ARAFT
Sbjct: 78 VNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT 137
Query: 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
GR I++FEG YHG D +G G P +PGV T TL +D+ + +
Sbjct: 138 GRRMILRFEGHYHGWHD--FSASGYNSHFDGQP-APGVLPETTANTLLIRPDDIEGMREV 194
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
F N+ +IAA I EPV + G FL + ++ GAL I DEV++GFR+ G
Sbjct: 195 FANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGM 254
Query: 300 QEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAG 357
Q V PD P G GGR D+M +++ + GT +GNP+ A
Sbjct: 255 QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAA 314
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDA--GKKAGHAICGGYISGMFGFFFTEGPVYN 415
I + + E +N + G+ + ++ +K + + G S GF G N
Sbjct: 315 IAAIDTILEDDVCAKINDL-GQFAREAMNHLFARKGLNWLAYGRFS---GFHLMPGLPPN 370
Query: 416 FEDAKKSETTKFAR--------FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
D + AR ++ EGV + F S H + ++H +T
Sbjct: 371 TTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHEREHVEHLVTTF 428
Query: 468 EKVLRQI 474
++VL ++
Sbjct: 429 DRVLDRL 435
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 170/383 (44%), Gaps = 31/383 (8%)
Query: 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA 116
N KELM + R + PI D + +WD++G EY+D+ G GH
Sbjct: 1 MNSNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHL 58
Query: 117 DDQVLAALGETMKKGTSFGAPCL-----LENVLAEMVISAVPS--IEMVRFVNSGTEACM 169
+V+AA+ +KK + L LE L E++ VP + V +G+EA
Sbjct: 59 HPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVE 116
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTA 228
+++ARA T R I F G YHG L G + G+ PG A Y
Sbjct: 117 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PC 173
Query: 229 PFNDVS------ALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
P + +S ++ +F+N+ +IAAI++EPV G GF A P F+ +R + E+G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG 339
+LI DEV +G R A E GV PD P+ GR ++M+ VAP G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K H G
Sbjct: 294 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK--HPEIGDV 348
Query: 400 --ISGMFGFFFTEGPVYNFEDAK 420
+ M E +N DAK
Sbjct: 349 RGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 171/383 (44%), Gaps = 31/383 (8%)
Query: 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA 116
N KELM + R + PI D + +WD++G EY+D+ G GH
Sbjct: 1 MNSNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHL 58
Query: 117 DDQVLAALGETMKKGTSFGAPCL-----LENVLAEMVISAVPS--IEMVRFVNSGTEACM 169
+V+AA+ +KK + L LE L E++ VP + V +G+EA
Sbjct: 59 HPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVE 116
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTA 228
+++ARA T R I F G YHG L G + G+ PG A Y
Sbjct: 117 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PC 173
Query: 229 PFNDVS------ALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
P + +S ++ +F+N+ +IAAI++EPV G+ GF A P F+ +R + E+G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG 339
+LI DEV +G R A E GV PD P+ GR ++M+ VAP G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K H G
Sbjct: 294 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK--HPEIGDV 348
Query: 400 --ISGMFGFFFTEGPVYNFEDAK 420
+ M E +N DAK
Sbjct: 349 RGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 170/383 (44%), Gaps = 31/383 (8%)
Query: 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA 116
N KELM + R + PI D + +WD++G EY+D+ G GH
Sbjct: 1 MNSNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHL 58
Query: 117 DDQVLAALGETMKKGTSFGAPCL-----LENVLAEMVISAVPS--IEMVRFVNSGTEACM 169
+V+AA+ +KK + L LE L E++ VP + V +G+EA
Sbjct: 59 HPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVE 116
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTA 228
+++ARA T R I F G YHG L G + G+ PG A Y
Sbjct: 117 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PC 173
Query: 229 PFNDVS------ALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
P + +S ++ +F+N+ +IAAI++EPV G GF A P F+ +R + E+G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG 339
+LI DEV +G R A E GV PD P+ GR ++M+ VAP G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K H G
Sbjct: 294 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK--HPEIGDV 348
Query: 400 --ISGMFGFFFTEGPVYNFEDAK 420
+ M E +N DAK
Sbjct: 349 RGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 169/383 (44%), Gaps = 31/383 (8%)
Query: 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA 116
N KELM + R + PI D + +WD++G EY+D+ G GH
Sbjct: 1 MNSNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHL 58
Query: 117 DDQVLAALGETMKKGTSFGAPCL-----LENVLAEMVISAVPS--IEMVRFVNSGTEACM 169
+V+AA+ +KK + L LE L E++ VP + V +G+EA
Sbjct: 59 HPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVE 116
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTA 228
+++ARA T R I F G YHG L G + G+ PG A Y
Sbjct: 117 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PC 173
Query: 229 PFNDVS------ALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
P + +S ++ +F+N+ +IAAI++EPV G GF A P F+ +R + E+G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG 339
+LI DE +G R A E GV PD P+ GR ++M+ VAP G
Sbjct: 234 IMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K H G
Sbjct: 294 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEK--HPEIGDV 348
Query: 400 --ISGMFGFFFTEGPVYNFEDAK 420
+ M E +N DAK
Sbjct: 349 RGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 141/291 (48%), Gaps = 25/291 (8%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA--- 145
+G+ +WD +GNEYID VG +G A +GH + +V+ A+ + T P L +
Sbjct: 35 QGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAE--TLMAMPQTLPTPMRGEF 92
Query: 146 EMVISAV--PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203
++A+ P + V VNSGTEA L+ ARA TGR+ KF G F +
Sbjct: 93 YRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRK---KFVAAMRG----FSGRTM 145
Query: 204 SGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261
++ P P +P E + P+NDV AL+ + E AA+ILEPV G G
Sbjct: 146 GSLSVTWEPKYREPFLPLVEPVEFI--PYNDVEALKRAVDE---ETAAVILEPVQGEGGV 200
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXX 320
P+FL A R IT+E GALLI DE+ TG R A E+FG+ PD
Sbjct: 201 RPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV 260
Query: 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
P+G R ++ + G T GNPLAM AG+ ++ L+ +E
Sbjct: 261 PLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWE 308
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 134/306 (43%), Gaps = 32/306 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K L E
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK--LLHVSNLYE 68
Query: 142 N----VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYH 192
N LA ++ + V F NSGTE+ ++LAR + + + I FE +H
Sbjct: 69 NPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFH 128
Query: 193 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252
G L G G P VP G +Y A ND+ ++ L + E A II+
Sbjct: 129 GRTYGSLSATGQPKFHKGF--EPLVP-GFSY----AKLNDIDSVYKLLDE---ETAGIII 178
Query: 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 311
E + G G DFL+ ++ I KE LLI DEV TG R A ++F + PD
Sbjct: 179 EVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238
Query: 312 XXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI-------HTLKRL 364
P+GA R ++ + P T GNPLA AG L +
Sbjct: 239 LAKGLGGGVPIGAILAREEVAQSFTPGS---HGSTFGGNPLACRAGTVVVDEVEKLLPHV 295
Query: 365 KEPGTY 370
+E G Y
Sbjct: 296 REVGNY 301
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 130/279 (46%), Gaps = 33/279 (11%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL---GETMKKGTSF--GAPCLLENV 143
KGS +WD G EYID+ G +GH ++ AL GET+ ++ P L
Sbjct: 47 KGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR--- 103
Query: 144 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHADP 197
L +I A + E V F+NSGTEA +LAR + + +II F +HG +
Sbjct: 104 LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRS-L 161
Query: 198 FLVKAGSGVATLGLPD-SPGV-PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255
F V G G P S G PK A + + PFND+ A++ + +++ A+++EP+
Sbjct: 162 FTVSVG------GQPKYSDGFGPKPA--DIIHVPFNDLHAVKAVMDDHT---CAVVVEPI 210
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXX 314
G G A P+FL +R + E+ ALL+FDEV G R A ++GVTPD
Sbjct: 211 QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAK 270
Query: 315 XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
PV A ++I T GNPLA
Sbjct: 271 ALGGGFPVSAMLTTQEIASAFHVGS---HGSTYGGNPLA 306
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 132/297 (44%), Gaps = 26/297 (8%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL--AE 146
+GS +WD G EYID+ G +GHA ++ AL E K G E VL A+
Sbjct: 29 EGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAK 88
Query: 147 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLV 200
+I A + + V F NSG EA L+LAR F + + I+ F+ +HG F V
Sbjct: 89 KLIDATFA-DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRT-LFTV 146
Query: 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260
AG A D +P + A +ND+++ L +++ A+I+EP+ G G
Sbjct: 147 SAGGQPAYS--QDFAPLPADIRH----AAYNDINSASALIDDST---CAVIVEPIQGEGG 197
Query: 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXX 319
+ FL +R + + ALLIFDEV TG R A ++GVTPD
Sbjct: 198 VVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG 257
Query: 320 XPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
PVGA + ++ T GNPLA L+ + P E LN +
Sbjct: 258 FPVGALLATEECARVMTVG---THGTTYGGNPLASAVAGKVLELINTP---EMLNGV 308
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 135/303 (44%), Gaps = 33/303 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 136
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K +
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 82
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCY 191
P + LAE+ +S V F N+GTEA +++AR + ++ RI+ +
Sbjct: 83 P---QXELAEL-LSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251
HG L +G P P VP +E FN+V E+L ++ A+
Sbjct: 139 HGRTLGSL--TATGQPKYQKPFEPLVPGFEYFE-----FNNV---EDLRRKXSEDVCAVF 188
Query: 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXX 310
LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV PD
Sbjct: 189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVL 248
Query: 311 XXXXXXXXXXPVGA--YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
P+GA R +++E P T GNPLA AG+ +K L + G
Sbjct: 249 TTAKGLGGGVPIGAVIVNERANVLE------PGDHGTTFGGNPLACRAGVTVIKELTKEG 302
Query: 369 TYE 371
E
Sbjct: 303 FLE 305
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 135/302 (44%), Gaps = 31/302 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 137
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K F
Sbjct: 11 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 70
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYH 192
+E LAE+ +S V F N+GTEA +++AR + ++ RI+ +H
Sbjct: 71 PQME--LAEL-LSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFH 127
Query: 193 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252
G L +G P P VP +E FN+V E+L ++ A+ L
Sbjct: 128 GRTLGSL--TATGQPKYQKPFEPLVPGFEYFE-----FNNV---EDLRRKMSEDVCAVFL 177
Query: 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 311
EP+ G SG + +FL R++ E ALL+FDEV G R A + +GV PD
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237
Query: 312 XXXXXXXXXPVGA--YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369
P+GA R +++E P T GNPLA AG+ +K L + G
Sbjct: 238 TAKGLGGGVPIGAVIVNERANVLE------PGDHGTTFGGNPLACRAGVTVIKELTKEGF 291
Query: 370 YE 371
E
Sbjct: 292 LE 293
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 21/305 (6%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 117
Query: 142 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 198
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 118 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 177
Query: 199 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 178 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQDPN--VAAFMVE 230
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 312
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 231 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 290
Query: 313 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 291 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYGGNPLGCRVAIAALEVLEEENLAE 347
Query: 372 YLNKI 376
+K+
Sbjct: 348 NADKL 352
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 21/305 (6%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +
Sbjct: 22 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 80
Query: 142 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 198
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 81 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 140
Query: 199 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 141 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQDPN--VAAFMVE 193
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 312
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 194 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 253
Query: 313 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 254 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYGGNPLGCRVAIAALEVLEEENLAE 310
Query: 372 YLNKI 376
+K+
Sbjct: 311 NADKL 315
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 143/337 (42%), Gaps = 48/337 (14%)
Query: 67 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126
GV PV ++ GG + + G+ + D+ + +G+ P ++ DQV E
Sbjct: 57 GVTLPVFVVRAGGG---IVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQV-----E 108
Query: 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFV--NSGTEACMGVLRLARAFTGRERI 184
P +AE + P R V NSG EA +++ARA T ++ +
Sbjct: 109 QFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQAV 168
Query: 185 IKFEGCYHGHADPFLV--------KAGSGVATLGLPDSPGVPKGATYETLTAPFND---- 232
+ F+ YHG + + K+G G P +P + + ++ P+ D
Sbjct: 169 VAFDYAYHGRTNLTMALTAKSMPYKSGFG------PFAPEIYRA----PVSYPYRDNLLD 218
Query: 233 ----------VSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
NL + G +AA+I+EP+ G GFI P FL A++R ++N
Sbjct: 219 KDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDND 278
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG 339
+ I DEV TGF R A ++ V PD P+ A GR +IM+ +G
Sbjct: 279 VVFIADEVQTGFARTGAMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSG 338
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
GT GNP+A A + T++ ++ G E +I
Sbjct: 339 ---LGGTFGGNPVACAAALATIETIERDGMVERARQI 372
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K L
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK---------L 75
Query: 141 ENVLAEMVISAV------------PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188
+++ +EM+ V P ++ +++G E+ +R+A+ TG+ I+ F
Sbjct: 76 DHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFA 135
Query: 189 GCYHG------HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENL 239
+HG A + G G A +G S +P TY ++ ++ L+
Sbjct: 136 QSWHGMTGAAASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYA 192
Query: 240 FE----NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
F+ + G +AA I EP++ + G I ++ A++R + G LLI DE TG R
Sbjct: 193 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 252
Query: 295 AYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354
A + GVTPD P+ A I E G ++ +S +PL
Sbjct: 253 GTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPA 311
Query: 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386
G+ L ++ G N + L +G++D
Sbjct: 312 AVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 343
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 21/305 (6%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T +
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 117
Query: 142 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 198
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 118 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 177
Query: 199 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 178 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQDPN--VAAFMVE 230
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 312
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 231 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 290
Query: 313 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 291 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYGGNPLGCRVAIAALEVLEEENLAE 347
Query: 372 YLNKI 376
+K+
Sbjct: 348 NADKL 352
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K L
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGK---------L 73
Query: 141 ENVLAEMVISAV------------PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188
+++ +EM+ V P ++ +++G E+ +R+A+ TG+ I+ F
Sbjct: 74 DHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFA 133
Query: 189 GCYHG------HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENL 239
+HG A + G G A +G S +P TY ++ ++ L+
Sbjct: 134 QSWHGMTGAAASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYA 190
Query: 240 FE----NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
F+ + G +AA I EP++ + G I ++ A++R + G LLI DE TG R
Sbjct: 191 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 250
Query: 295 AYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354
A + GVTPD P+ A I E G ++ +S +PL
Sbjct: 251 GTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPA 309
Query: 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386
G+ L ++ G N + L +G++D
Sbjct: 310 AVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 341
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 21/305 (6%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T +
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 117
Query: 142 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 198
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 118 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 177
Query: 199 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 178 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQD--PNVAAFMVE 230
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 312
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 231 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 290
Query: 313 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 291 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HFSTYGGNPLGCRVAIAALEVLEEENLAE 347
Query: 372 YLNKI 376
+K+
Sbjct: 348 NADKL 352
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 21/323 (6%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 141 ENVL---AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG---- 193
V+ + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 194 --HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNK 244
A + G G A +G S +P TY ++ ++ L+ F+ +
Sbjct: 144 AASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 200
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303
G +AA I EP++ + G I ++ A++R + G LLI DE TG R A +
Sbjct: 201 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 260
Query: 304 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
GVTPD P+ A I E G ++ +S +PL G+ L
Sbjct: 261 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDV 319
Query: 364 LKEPGTYEYLNKITGELTQGIID 386
++ G N + L +G++D
Sbjct: 320 VQRDGLVARANVMGDRLRRGLLD 342
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 21/323 (6%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 141 ENVL---AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG---- 193
V+ + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 194 --HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNK 244
A + G G A +G S +P TY ++ ++ L+ F+ +
Sbjct: 145 AASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 201
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303
G +AA I EP++ + G I ++ A++R + G LLI DE TG R A +
Sbjct: 202 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 261
Query: 304 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
GVTPD P+ A I E G ++ +S +PL G+ L
Sbjct: 262 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDV 320
Query: 364 LKEPGTYEYLNKITGELTQGIID 386
++ G N + L +G++D
Sbjct: 321 VQRDGLVARANVMGDRLRRGLLD 343
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 132/320 (41%), Gaps = 59/320 (18%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDY--------VGSWGPAIIGHADDQVLAALGETMKKGTS 133
P+ + G + D DGN+ ID+ VG+ PA++ QV A
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAA----------- 99
Query: 134 FGAPCLLEN------VLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERII 185
F C + +AE + P R NSG EA +++ARA+T R+ ++
Sbjct: 100 FTHTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQAVV 159
Query: 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSP-----GVPKGATYETLTA-PFND------- 232
F+ YHG + + + P G Y T+ PF D
Sbjct: 160 VFDHAYHGRTNLTMAMTAK--------NQPYKHGFGPFANEVYRVPTSYPFRDGETDGAA 211
Query: 233 -VSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ +L G +AA+++EPV G GF+ P P FL A+++ +NGA+ + DEV
Sbjct: 212 AAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQ 271
Query: 290 TGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPM--YQAGT 346
TGF R A E+ V PD P+ A GR +IM+ GP GT
Sbjct: 272 TGFARTGALFACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMD-----GPQSGGLGGT 326
Query: 347 LSGNPLAMTAGIHTLKRLKE 366
GNPLA A + + ++
Sbjct: 327 YGGNPLACAAALAVIDTIER 346
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 133/319 (41%), Gaps = 37/319 (11%)
Query: 43 EQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYI 102
EQ++N AF K S V A G P+ + G + D+DGN +I
Sbjct: 13 EQKRNIN-----GAFPGPKSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFI 67
Query: 103 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN------VLAEMVISAVPSIE 156
D +G +D V+AA + F C + + E + P
Sbjct: 68 DLGSGIAVTSVGASDPAVVAA---VQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH 124
Query: 157 MVRFV--NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD---PFLVKAGSGVATLGL 211
R V NSG EA +++AR TGR+ ++ F+ YHG + KA G
Sbjct: 125 AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFG- 183
Query: 212 PDSPGVPKGATYETLTAPFND----VSALE------NLFENNKG--EIAAIILEPVVGNS 259
P +P V + ++ PF + ++ E + E G ++AAII+EP+ G
Sbjct: 184 PFAPEVYR----MPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEG 239
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXX 318
GFI P FL A+ KE G + I DEV +GF R A ++ GV PD
Sbjct: 240 GFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAG 299
Query: 319 XXPVGAYGGRRDIMEMVAP 337
P+ A GR D+++ V P
Sbjct: 300 GLPLSAITGRADLLDAVHP 318
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 127/308 (41%), Gaps = 34/308 (11%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGAPCL 139
P+ G + D DGN +ID +G H A T T F
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 140 LENV-LAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196
+ V +AE++ + P R NSG EA +++AR TGR ++ F+ YHG +
Sbjct: 107 EQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTN 166
Query: 197 -----------------PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
PF + A+ L D PG+ T E A +S +E
Sbjct: 167 LTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL----TGEE--AARRAISRIET- 219
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298
+ +AAII+EP+ G GFI P P FL + ENG + I DEV TGF R
Sbjct: 220 -QIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF 278
Query: 299 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
A E+ G+ PD P+ A GR ++M+ V GT GNP+ A +
Sbjct: 279 ASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVY---AGGLGGTYGGNPVTCAAAV 335
Query: 359 HTLKRLKE 366
L ++E
Sbjct: 336 AALGVMRE 343
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 145/345 (42%), Gaps = 43/345 (12%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+V D +G ++D+DGN+Y+D+ G +G + +G + + A
Sbjct: 25 PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 142 NV----LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH- 194
N+ LA+ +++ P + V F NSGTEA +++ + TGR+ II F G +HG
Sbjct: 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-TGRKYIIAFLGGFHGRT 143
Query: 195 ----------------ADPFLVKAGSGVATLGLPDSPGVPKGAT-YETLTAPFNDVSAL- 236
PF+ GV + P+ P YE + N V
Sbjct: 144 FGSISLTASKAVQRSIVGPFM----PGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFI 199
Query: 237 -ENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292
+ +F N E+A I EP+ G G++ P +F ++++ K+ G LL+ DEV G
Sbjct: 200 EDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLG 259
Query: 293 RLAYGGAQEYFGVTPDXXXXXXXX-XXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
R A E F PD P+GA R+D+ P + T GN
Sbjct: 260 RTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL-----DFKPGMHSNTFGGNA 314
Query: 352 LAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 394
LA G + +K+ P E + KI E QG+ D + G A
Sbjct: 315 LACAIGSKVIDIVKDLLPHVNE-IGKIFAEELQGLADDVRGIGLA 358
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 141/345 (40%), Gaps = 64/345 (18%)
Query: 67 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126
G PV A ++ GG + + V G+ + D+ + VG+ P ++ QV
Sbjct: 40 GTTMPVYAVRAGGG---IVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV------ 90
Query: 127 TMKKGTSFGAPCLL----ENVLAEMVISAVPSIEMVR------FVNSGTEACMGVLRLAR 176
F C + E +A V + + VR NSG+EA +++AR
Sbjct: 91 -----GDFTHTCFMVTPYEGYVA--VCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIAR 143
Query: 177 AFTGRERIIKFEGCYHGHADPFLV--------KAGSGVATLGLPDSPGVPKGATYETLTA 228
+ T + ++ F+ YHG + + K G G P +P + + L+
Sbjct: 144 SHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFG------PFAPEIYRA----PLSY 193
Query: 229 PFNDVSALENLFENNK----------------GEIAAIILEPVVGNSGFIAPKPDFLNAI 272
PF D + L + + +AA+++EP+ G GFI P FL +
Sbjct: 194 PFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTL 253
Query: 273 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDI 331
++N + I DEV TGF R A E+ G+ PD P+ A GR +I
Sbjct: 254 LDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEI 313
Query: 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
M+ +G GT GNP+A A + T++ ++ G +I
Sbjct: 314 MDSPHVSG---LGGTYGGNPIACAAALATIETIESEGLVARAQQI 355
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 131/311 (42%), Gaps = 23/311 (7%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 142
IV + +G +++D +Y+D+ G +G+ + A + + K EN
Sbjct: 20 IVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNEN 79
Query: 143 VLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYHGHAD 196
+ A A S +E V F NSGTE+ G + AR + + + I F+ +HG
Sbjct: 80 IAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHSFHGRT- 138
Query: 197 PFLVKAGSGVATLGLPDSPGVP-KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255
G +L + P K A +ND+S++E L + AIILE V
Sbjct: 139 -------LGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE---KTCAIILESV 188
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXX 314
G G DF A+R++ E LLI DE+ G R A E+ + PD
Sbjct: 189 QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAK 248
Query: 315 XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KEPGTYEYL 373
VGA+ + + AG T GNPL + AG++ + + KE E +
Sbjct: 249 ALGCGLSVGAFVINQKVASNSLEAGD--HGSTYGGNPL-VCAGVNAVFEIFKEEKILENV 305
Query: 374 NKITGELTQGI 384
NK+T L Q +
Sbjct: 306 NKLTPYLEQSL 316
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ AP
Sbjct: 373 PV------------NMAALQKFFVEQGVWIAP 392
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 138/357 (38%), Gaps = 41/357 (11%)
Query: 50 LKKSEEAFNVAKELMPGGVN-SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
LK S++ N EL G N P+ P+V KG ++DI+ Y D++ ++
Sbjct: 7 LKSSQDYMN--NELTYGAHNYDPI---------PVVLKRGKGVFVYDIEDRRYYDFLSAY 55
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV-LAEMVISAVPSIEMVRFVNSGTEA 167
GH +L A+ KK T +++ + E ++ + + V +N+G EA
Sbjct: 56 SSVNQGHCHPDILNAMINQAKKLTICSRAFFSDSLGVCERYLTNLFGYDKVLMMNTGAEA 115
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-----------PG 216
+L R + + I A + TLG + P
Sbjct: 116 SETAYKLCRKWGYEVKKIP-----ENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPF 170
Query: 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
VP L P++D+ ALE ++ + A I+EPV G +G I P + + +
Sbjct: 171 VP-----NFLKVPYDDLEALEKELQD--PNVCAFIVEPVQGEAGVIVPSDSYFPGVASLC 223
Query: 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEM 334
K+ L + DEV TG R ++GV PD P+ A D+M +
Sbjct: 224 KKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLV 283
Query: 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391
+ P T GNPLA + LK L E +K+ Q + + K +
Sbjct: 284 LKPGE---HGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDS 337
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 123/298 (41%), Gaps = 28/298 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT-LTSRAFHS 77
Query: 142 NVLAEMV--ISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCY 191
+ L ++ + + EMV +N+G EA ++ AR + R II E +
Sbjct: 78 DQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNF 137
Query: 192 HGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250
HG + + + G P PG+ + P+ D+ AL+ N AA
Sbjct: 138 HGRTMGAVSMSSNEEYKRGFGPMLPGI--------IVIPYGDLEALKAAITPNT---AAF 186
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDX 309
ILEP+ G +G P FL + K+ L + DE+ TG R A ++ VTPD
Sbjct: 187 ILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM 246
Query: 310 XXXXXXXXXXX-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
P+ RDI+ + P T GNPLA I L+ L+E
Sbjct: 247 YILGXALGGGVFPISCAAANRDILGVFEPGS---HGSTFGGNPLACAVSIAALEVLEE 301
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 121/316 (38%), Gaps = 27/316 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-----FGA 136
P+V KG ++D++ Y D++ ++ GH +L A+ K T F
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196
P + E ++ + + V +N+G EA +L R + + I A
Sbjct: 108 PL----GICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP-----ENMAK 158
Query: 197 PFLVKAGSGVATLGLPDSPGVPKGATY------ETLTAPFNDVSALENLFENNKGEIAAI 250
+ K TLG + K + + P++D+ ALE E + A
Sbjct: 159 IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE--ELKDPNVCAF 216
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDX 309
I+EP+ G +G I P ++L + I K+ L + DEV TG R ++ V PD
Sbjct: 217 IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDV 276
Query: 310 XXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
P+ A DIM ++ P T GNPLA + + L L
Sbjct: 277 ILLGKALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEK 333
Query: 369 TYEYLNKITGELTQGI 384
E K+ G + +
Sbjct: 334 LCENAEKLGGPFLENL 349
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 160/392 (40%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 160/392 (40%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 36/339 (10%)
Query: 100 EYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-I 155
E +D + SW AI GH A DQ L M G LA++++ P+ +
Sbjct: 81 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL 140
Query: 156 EMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKA----GSG 205
+ V F +SG+ + ++A R G+ R++ + G YHG D FL + G
Sbjct: 141 DTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--DTFLAMSICDPHGG 198
Query: 206 VATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GN 258
+ +L +P VP+ Y+ + +A E + GE+AA+++EPVV G
Sbjct: 199 MHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGELAAVVVEPVVQGA 251
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXX 316
G P +L+ +R I + LLIFDE+ TGF R A ++ GV+PD
Sbjct: 252 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 311
Query: 317 XXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374
+ A D+ ++ AG + + T NPLA + +++ L +
Sbjct: 312 GGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRIT 371
Query: 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413
++ LT G+ A +A A+ + G G + PV
Sbjct: 372 ELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 408
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 160/392 (40%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG+ G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHGNT--------FGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 36/339 (10%)
Query: 100 EYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-I 155
E +D + SW AI GH A DQ L M G LA++++ P+ +
Sbjct: 56 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL 115
Query: 156 EMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKA----GSG 205
+ V F +SG+ + ++A R G+ R++ + G YHG D FL + G
Sbjct: 116 DTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--DTFLAMSICDPHGG 173
Query: 206 VATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GN 258
+ +L +P VP+ Y+ + +A E + GE+AA+++EPVV G
Sbjct: 174 MHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGELAAVVVEPVVQGA 226
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXX 316
G P +L+ +R I + LLIFDE+ TGF R A ++ GV+PD
Sbjct: 227 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 286
Query: 317 XXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374
+ A D+ ++ AG + + T NPLA + +++ L +
Sbjct: 287 GGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRIT 346
Query: 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413
++ LT G+ A +A A+ + G G + PV
Sbjct: 347 ELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 383
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF +
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 145/339 (42%), Gaps = 36/339 (10%)
Query: 100 EYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-I 155
E +D + SW AI GH A DQ L M G LA++++ P+ +
Sbjct: 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL 135
Query: 156 EMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKA----GSG 205
+ V F +SG+ + ++A R G+ R++ + G YHG D FL + G
Sbjct: 136 DTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--DTFLAMSICDPHGG 193
Query: 206 VATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GN 258
+ +L +P VP+ Y+ + +A E + GE+AA+++EPVV G
Sbjct: 194 MHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGELAAVVVEPVVQGA 246
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXX 316
G P +L+ +R I + LLIFDE+ TGF R A ++ GV+PD
Sbjct: 247 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 306
Query: 317 XXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374
+ A D+ ++ AG + T NPLA + +++ L +
Sbjct: 307 GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRIT 366
Query: 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413
++ LT G+ A +A A+ + G G + PV
Sbjct: 367 ELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 403
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
+HG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GFHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 295 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 351
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 161/393 (40%), Gaps = 59/393 (15%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 135
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 136 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 189
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 236
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 237 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF A
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG-A 253
Query: 296 YGG--AQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGN 350
G A E+ + PD + A R++ E ++ AG T GN
Sbjct: 254 TGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGN 313
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
PLA A +L L+ + + I +L + + A + + + G G T
Sbjct: 314 PLACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETT 371
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443
PV A + +E+GV+ P
Sbjct: 372 HPV------------NMAALQKFFVEQGVWIRP 392
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 130/334 (38%), Gaps = 42/334 (12%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGAPC 138
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ T A
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 139 LLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG--- 193
LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 99 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 194 -------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENLFEN 242
H+ G+ L PD P G TL E L
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLT--------EKLAAV 210
Query: 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 302
G I A +EP+ + G I P FL I + +G L++ DEV G LA G
Sbjct: 211 PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGRLHC 268
Query: 303 F---GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG-- 357
F G PD P+ A +I++ + + TL GNP++ AG
Sbjct: 269 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCAS----AFAMQTLHGNPISAAAGLA 324
Query: 358 -IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
+ T+ R P E ++ L G+ + K+
Sbjct: 325 VLETIDRDDLPAMAERKGRL---LRDGLSELAKR 355
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 123/310 (39%), Gaps = 42/310 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSFG 135
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ ++
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 136 APCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
AP + LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAV---TLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG 142
Query: 194 ----------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENL 239
H+ G+ L PD P G TL E L
Sbjct: 143 CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLT--------EKL 194
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
G I A +EP+ + G I P FL I + +G L++ DEV G LA G
Sbjct: 195 AAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGR 252
Query: 300 QEYF---GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356
F G PD P+ A +I++ + + TL GNP++ A
Sbjct: 253 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCAS----AFAMQTLHGNPISAAA 308
Query: 357 GIHTLKRLKE 366
G+ L+ +
Sbjct: 309 GLAVLETIDR 318
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 31/265 (11%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 131 -----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 178
G +G P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 179 TGRERIIKFEGCYHGH--ADPFLVKAGSGVATLGLP--DSPGVP----------KGATYE 224
+ ++I YHG A L G P D +P +G E
Sbjct: 140 ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKE 199
Query: 225 TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 284
A +++ L L ++ IAA+ +EP+ G++G + P +L R I ++ LL+
Sbjct: 200 GGIALADELLKLIEL--HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLV 257
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPD 308
FDEV+TGF R + FGVTPD
Sbjct: 258 FDEVITGFGRTGSMFGADSFGVTPD 282
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 30/321 (9%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--------GTSFGAPCLL 140
+G ++WD +GN+ ID + +G+ A M++ T+ A L
Sbjct: 40 EGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVEL 99
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGH 194
++LAE+ + + V + NSG+E+ ++R+ R + ++ +I YHG
Sbjct: 100 SSLLAEVTPAG---FDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGS 156
Query: 195 ----ADPFLVKAGSGVATLGLPDSPGVPKGATY----ETLTAPFNDVSAL---ENLFENN 243
A +K L +P + + Y + F V+A E + E
Sbjct: 157 TIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIG 216
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302
++AA + EP+ G G I P + I RI ++ LL+ DEV+ GF R ++
Sbjct: 217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQH 276
Query: 303 FGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
FG PD P+GA + + E + G T SG+P+ +
Sbjct: 277 FGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANV 336
Query: 362 KRLKEPGTYEYLNKITGELTQ 382
L++ G + + G Q
Sbjct: 337 AALRDEGIVQRVKDDIGPYMQ 357
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 106/267 (39%), Gaps = 37/267 (13%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH----ADDQVLAALGE 126
P K P++ +S G + DI+G EY D S + GH DD + LG+
Sbjct: 16 PFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK 75
Query: 127 TMKKGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG----- 180
+ T G + LAE +I P + V + +SG EA L++A +
Sbjct: 76 -IAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP 134
Query: 181 -RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--------- 230
+++ I + YHG V ++ L P +E+ AP
Sbjct: 135 EKQKFIAMKNGYHGDT-----IGAVSVGSIELFHHVYGP--LMFESYKAPIPYVYRSESG 187
Query: 231 -------NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGAL 282
+ L L E + EIAA+ +E +V G SG I +L +R + L
Sbjct: 188 DPDECRDQXLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVL 247
Query: 283 LIFDEVMTGF-RLAYGGAQEYFGVTPD 308
+I DEV TGF R A E+ V PD
Sbjct: 248 MIVDEVATGFGRTGKMFACEHENVQPD 274
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 110/262 (41%), Gaps = 27/262 (10%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH----ADDQVLAALGE 126
P K P++ +S G + DI+G EY D S + GH DD + LG+
Sbjct: 16 PFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK 75
Query: 127 TMKKGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG----- 180
+ T G + LAE +I P + V + +SG EA L++A +
Sbjct: 76 -IAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP 134
Query: 181 -RERIIKFEGCYHGHADPF-LVKAGS-----GVATLGLPDSPGVPKGATYETLTAPFND- 232
+++ I + YHG D V GS V + +S P Y + + ++
Sbjct: 135 EKQKFIAMKNGYHG--DTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDEC 192
Query: 233 ----VSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
+ L L E + EIAA+ +E +V G SG I +L +R + L+I DE
Sbjct: 193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDE 252
Query: 288 VMTGF-RLAYGGAQEYFGVTPD 308
V TGF R A E+ V PD
Sbjct: 253 VATGFGRTGKMFACEHENVQPD 274
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 126/306 (41%), Gaps = 47/306 (15%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMK---------KGTSFGAP 137
+G ++D G Y+D GS G + IGH +V GE M G+ F +
Sbjct: 19 EGVFLYDDAGRRYLD--GSSGALVANIGHGRAEV----GERMAAQAARLPFVHGSQFSSD 72
Query: 138 CLLENV--LAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAF------TGRERIIKF 187
L E LA V + RF V+ G+EA ++LAR + GR ++I
Sbjct: 73 VLEEYAGRLARFV-----GLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITR 127
Query: 188 EGCYHGHADPFLVKAGSGV-----ATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFE 241
YHG + L +G G L P++ P +PK D L L E
Sbjct: 128 VPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA---EDAEGLRALLE 184
Query: 242 NNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298
E +AA + EPVVG S +AP P + +R I E G + I DEVM+G R
Sbjct: 185 REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL 244
Query: 299 A-QEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMT 355
A + GVTPD P+ + E V + G T +G+P+++
Sbjct: 245 ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVA 304
Query: 356 AGIHTL 361
AG+ L
Sbjct: 305 AGLSVL 310
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 113/306 (36%), Gaps = 40/306 (13%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV--LAE 146
+G + DI G Y+D G+ ++ A + ++ + F E LAE
Sbjct: 39 EGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEPAIKLAE 98
Query: 147 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHA-------- 195
+ + ++ F NSG+EA ++AR + G KF Y G+
Sbjct: 99 KLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXA 158
Query: 196 -----------DPFLVKAGSGVATLGLPDS---PGVPKGATYETLTAPFNDVSALENLFE 241
+PF SG + PD PG+ + Y+ D L E
Sbjct: 159 ATGQAQRRYQYEPF----ASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXTWELSE 214
Query: 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 300
IAA I EP++ G + D+ A+ +++GALLI DEV+ GF R
Sbjct: 215 T----IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGF 270
Query: 301 EYFGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGP---MYQAGTLSGNPLAMTA 356
+ V PD P+ A +R+I E G T GNP A
Sbjct: 271 XNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACAL 330
Query: 357 GIHTLK 362
+ L+
Sbjct: 331 ALKNLE 336
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 233 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
V+ LE L E + IAA I EP++G G + P + AI+ + ++ LL+ DEV+TG
Sbjct: 206 VAELEALIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTG 265
Query: 292 F-RLAYGGAQEYFGVTPDXXXXXXX--XXXXXPVGAYGGRRDIMEMVAPA----GPMYQA 344
F RL +++G+ PD P+ + +++ GP+
Sbjct: 266 FGRLGTXFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHG 325
Query: 345 GTLSGNPLAMTAGIHTLKRLKE 366
T S +P+ AG+ LK L E
Sbjct: 326 WTYSAHPIGAAAGVANLKLLDE 347
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 122/313 (38%), Gaps = 40/313 (12%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVL 144
+G +WD +G + ID +G+ ++ A+ K + G L
Sbjct: 41 EGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITL 100
Query: 145 AEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHADP 197
A+ +I P V F SG++A ++L + +++II YHG
Sbjct: 101 AKXIIDRAPKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG-- 158
Query: 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGE------- 246
V GS ++ +P+ T AP+ D S E F + +
Sbjct: 159 --VXTGSLTGLDLFHNAFDLPRAPVLHT-EAPYYFRRTDRSXSEEQFSQHCADKLEEXIL 215
Query: 247 ------IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299
IAA I EP++G G + P + I+ + K+ LL+ DEV+TGF RL
Sbjct: 216 AEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFG 275
Query: 300 QEYFGVTPDXXXXXXX--XXXXXPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLA 353
+++G+ PD P+ + +++ G + T S +P+
Sbjct: 276 SDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPIC 335
Query: 354 MTAGIHTLKRLKE 366
+ AG+ L+ + E
Sbjct: 336 VAAGVANLELIDE 348
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 298
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 299 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 355
A + V PD G GRR ++ VA A P A T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLASTWGGNLTDMV 339
Query: 356 AGIHTLKRLKEPGTYE 371
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 298
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 299 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 355
A + V PD G GRR ++ VA A P T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSTWGGNLTDMV 339
Query: 356 AGIHTLKRLKEPGTYE 371
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 298
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 299 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 355
A + V PD G GRR ++ VA A P T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSTWGGNLTDMV 339
Query: 356 AGIHTLKRLKEPGTYE 371
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 298
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 299 AQEYFGVTPD 308
A + V PD
Sbjct: 285 AYQQLDVAPD 294
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 128/345 (37%), Gaps = 29/345 (8%)
Query: 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG 114
+A + A L P N+ A G + V +G + D +G E +D + IG
Sbjct: 16 QALDAAHHLHPFSANN---ALGEEGTR--VITRARGVWLNDSEGEEILDAMAGLWCVNIG 70
Query: 115 HADDQVLAALGETMKK----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 169
+ D++ M++ T F + LA+ + P + V F G+EA
Sbjct: 71 YGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEAND 130
Query: 170 GVLRLARAFTG------RERIIKFEGCYHGH---ADPFLVKAGSGVATLGLPDSPGV--- 217
+R+ R + + II + YHG + AG + +PD +
Sbjct: 131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQP 190
Query: 218 ---PKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
+G + LE + E + +AA I EPV G G I + I+
Sbjct: 191 NWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ 250
Query: 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXX-XXXXXXPVGAYGGRRDI 331
RI + LLI DEV+ GF R + G+ P P+G ++
Sbjct: 251 RICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEV 310
Query: 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
++ T SG+P+A + L+ L+E +++ +
Sbjct: 311 AHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNV 354
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 35/256 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
QP V +G ++ DG ID A +G+ +++ A+ + +P +
Sbjct: 37 QP-VLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMV-LPYASPWYM 94
Query: 141 ENV----LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRER----IIKFE 188
LAE + + P + + F G+ A LR + + GR + I++++
Sbjct: 95 ATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYD 154
Query: 189 GCYHGHAD------------PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSA 235
G YHG P A ++ L P+ P+ A + A +D V
Sbjct: 155 G-YHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPN----PRHAGNRSQEAFLDDLVQE 209
Query: 236 LENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 294
E+ E+ IAA + EP++ + G I P + + I +++ L I DEV+TGF
Sbjct: 210 FEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGR 269
Query: 295 A--YGGAQEYFGVTPD 308
+ +++ FGV PD
Sbjct: 270 CGEWFASEKVFGVVPD 285
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 56/259 (21%)
Query: 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL----L 140
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 49 YEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPP 108
Query: 141 ENV---LAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLAR-------AFTGRE--- 182
EN L E ++S P I M S A + R AF+ E
Sbjct: 109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELET 168
Query: 183 ------------RIIKFEGCYHGHADPFLVKAGS-GVATLGLP--DSPGVPKGATYETLT 227
I+ F G +HG L S + + +P D P P + L
Sbjct: 169 CMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAP----FPRLK 224
Query: 228 APFND------------VSALENL---FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272
P + + +E+L + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 273 RRITKENGALLIFDEVMTG 291
R I++++G + DEV TG
Sbjct: 285 RDISRKHGCAFLVDEVQTG 303
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 196 DPFLVKAGSGVATLGLPDSPG--VPKGATYETLTAPFN---DVSALENLFE--------- 241
DP V +G + LP+S P+ T+ + F+ D S L ++
Sbjct: 526 DPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585
Query: 242 ----NNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295
+ A+I+EPV+ G G P F + + +IFDEV TGF RL
Sbjct: 586 HSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG 645
Query: 296 YGGAQEYFGVTPD 308
E G PD
Sbjct: 646 VETTTELLGCKPD 658
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 196 DPFLVKAGSGVATLGLPDSPG--VPKGATYETLTAPFN---DVSALENLFE--------- 241
DP V +G + LP+S P+ T+ + F+ D S L ++
Sbjct: 526 DPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585
Query: 242 ----NNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295
+ A+I+EPV+ G G P F + + +IFDEV TGF RL
Sbjct: 586 HSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG 645
Query: 296 YGGAQEYFGVTPD 308
E G PD
Sbjct: 646 VETTTELLGCKPD 658
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 28/235 (11%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPC 138
+V +G ++ D++G Y+D + G ++ A ++ FG
Sbjct: 45 VVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMS 104
Query: 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCY 191
+L+E ++ P V + NSG+EA + L A + +I+ Y
Sbjct: 105 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAY 164
Query: 192 HGHADPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALEN 238
HG G + GLP PG +G T E A LE
Sbjct: 165 HGVTAVSASMTGKPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEE 221
Query: 239 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 222 TIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 276
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 88/235 (37%), Gaps = 28/235 (11%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPC 138
+V +G ++ D++G Y+D + G ++ A ++ +FG
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMS 110
Query: 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCY 191
+L+E ++ P V + NSG+EA + L A + +I+ Y
Sbjct: 111 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAY 170
Query: 192 HGHADPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALEN 238
HG G + GLP PG +G T E A LE
Sbjct: 171 HGATAVSASMTGFPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEE 227
Query: 239 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 228 TIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGF 282
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 85/235 (36%), Gaps = 28/235 (11%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPC 138
+V +G ++ D++G Y+D + G ++ A ++ FG
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXS 110
Query: 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCY 191
L+E ++ P V + NSG+EA + L A + +I+ Y
Sbjct: 111 DQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAY 170
Query: 192 HGHADPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALEN 238
HG G + GLP PG +G T E A LE
Sbjct: 171 HGVTAVSASXTGKPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEE 227
Query: 239 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + IA EPV G G I P + AI I ++ +I DEV+ GF
Sbjct: 228 TIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 282
>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3PD6|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218
RFV T + G LR+ +F +R KF D FL K G T D+
Sbjct: 96 RFVTVQTISGTGALRVGASFL--QRFFKFS------RDVFLPKPSWGNHTPIFRDAGMQL 147
Query: 219 KGATY-ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
+G Y + T F+ ALE++ + E + ++L N + P+P+ I + K
Sbjct: 148 QGYRYYDPKTCGFDFSGALEDI--SKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVK 205
Query: 278 ENGALLIFDEVMTGF 292
+ FD GF
Sbjct: 206 KKNLFAFFDMAYQGF 220
>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218
RFV T + G LR+ +F +R KF D FL K G T D+
Sbjct: 96 RFVTVQTISGTGALRVGASFL--QRFFKFS------RDVFLPKPSWGNHTPIFRDAGMQL 147
Query: 219 KGATY-ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
+G Y + T F+ ALE++ + E + ++L N + P+P+ I + K
Sbjct: 148 QGYRYYDPKTCGFDFSGALEDI--SKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVK 205
Query: 278 ENGALLIFDEVMTGF 292
+ FD GF
Sbjct: 206 KKNLFAFFDMAYQGF 220
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 229 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGF 274
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 130 KGTSFGAPC---LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182
+G SFGA C L+E+VLAE E+ + TE GV+ R F G++
Sbjct: 294 EGISFGASCPLSLVESVLAE---------EIAKLPEQKTEVFRGVMEQLRWFAGKQ 340
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 130 KGTSFGAPC---LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182
+G SFGA C L+E+VLAE E+ + TE GV+ R F G++
Sbjct: 294 EGISFGASCPLSLVESVLAE---------EIAKLPEQKTEVFRGVMEQLRWFAGKQ 340
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 189 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
G Y G+ D G G AT G D P VP+G+T T A
Sbjct: 280 GQYVGNPD------GEGEATKGYLDDPTVPRGSTTATFAA 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,850,031
Number of Sequences: 62578
Number of extensions: 614930
Number of successful extensions: 1940
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 102
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)